LOCUS       KCLJ01000001             491 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 3cal ultra-conserved element locus
            uce-4516, sequence.
ACCESSION   KCLJ01000001
VERSION     KCLJ01000001.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 491)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 491)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..491
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="3cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>491
                     /note="ultra-conserved element locus uce-4516"
BASE COUNT          145 a           96 c           89 g          161 t
ORIGIN      
        1 gtgtttgaaa tatgtgcttg gtgacatgga gctgattgcc caaaggaatc aggatacata
       61 tatttgtatt attgtacacg tgagtagctt gaatcatgta ctgctcgctc tctttgtttg
      121 gattatgcag cttggctggg cagccatcca aaagattcac attaaattct agctatattc
      181 agcacaaaag tcatctagca tcagaggatc aaagttacat caaccaacaa gcactaagga
      241 attgataagc cactaaaatt aggtcatctc ctagcagctg cttttgatgg atgaagtaga
      301 atttagcctc aggttttcta tttaaagatc tgttacagca tcttttcctg cagctacaat
      361 gagaacacaa caaagtataa tgcttctgat taaatgttta atcattactc tttactcttc
      421 tgattgtttc tgccatggca cagatttaca gcacatacta tttgcagctt tcctagccct
      481 ttttaagctg a
//
LOCUS       KCLJ01000002             537 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 113cal ultra-conserved element locus
            uce-5301, sequence.
ACCESSION   KCLJ01000002
VERSION     KCLJ01000002.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 537)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 537)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..537
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="113cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>537
                     /note="ultra-conserved element locus uce-5301"
BASE COUNT          163 a          118 c          110 g          146 t
ORIGIN      
        1 caactgcact atcctccaac tggccaacat ggaggttgga gaccacacgg ggatcaaagc
       61 gatatgagga caacaggggt ttcattaaaa tgttctcctc gctgcctgag gaaagagcag
      121 tgaggacaga gggagagggg gaggaaggga aatcatctgg tccaaacaag tttaactaaa
      181 aaaaaatcca agcaaaccac ctgtggtctc cttggaaact ggcttgcaac ccctccagcc
      241 accttttaat gaaaccccag agccccttta ttaatttatt aaagaatcta ttttctgaag
      301 attcataaac cgcgcataac tcatattcca acacatctct gctatgctaa tagcgcgtgc
      361 tgccatgaat aattaattct ttaattagta ataattagag gttgttgtat aggtcaaacc
      421 attgggctga cagcatgcta ctgtcaaaat gtcatttgaa ttaacaggac tgtggccctt
      481 tctacacaga atggtttgtt gtttgggtcc cctcccctcc aaattttatt gttttaa
//
LOCUS       KCLJ01000003             446 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 218cal ultra-conserved element locus
            uce-3360, sequence.
ACCESSION   KCLJ01000003
VERSION     KCLJ01000003.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 446)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 446)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..446
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="218cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>446
                     /note="ultra-conserved element locus uce-3360"
BASE COUNT          173 a           74 c           47 g          152 t
ORIGIN      
        1 tttttttaac aaaaattaaa ctatacacca atctaagtta cagaaacaaa aataaccttt
       61 ataagatcac atgtataaaa caagaaatga aatgtgtttt tatttaaggc aatactgggc
      121 tacttcacaa atcaccacct caaatatata cactgctcca cactactaat tttctatcac
      181 attcacaacg gattctttaa taccaaatat tgttttaaat cttcaatgta gcaaactatt
      241 tttattcaca tttccaatta tggaatcata aatgctttgt aaccaattaa aagcaatgaa
      301 aaatgtagct aagaaaacta ttatatttat gtgttaacta catatgaata tcatccatag
      361 atcttggatg ttaaaattta caaaaatgag agtgtgtcag tacgtttaac ctatgaaatg
      421 tgatcttatc cagctttctt ctgtaa
//
LOCUS       KCLJ01000004             778 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 308cal ultra-conserved element locus
            uce-601, sequence.
ACCESSION   KCLJ01000004
VERSION     KCLJ01000004.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 778)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 778)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..778
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="308cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>778
                     /note="ultra-conserved element locus uce-601"
BASE COUNT          244 a          166 c          143 g          225 t
ORIGIN      
        1 aatgccagtt gtaatgcaat ttattggatc ttctgaaatt tcagatcact gcatcctata
       61 agcaatactt tgcattcttc agccaaagag agcctaacca gaaaaaacag gagtctcaag
      121 tgcacctaga tatgtttagc ataaaagcac ttatatacaa gtaacaagac acaaccacta
      181 tttattgttt cagctttaag tctcgcatgc ctcaagagga caagatggca tgctggccct
      241 ttaaaactga aatgcttgtt tcctttctgt aagaaaagta aatcatgcta tagtgagtgg
      301 agctttgaaa aagcatccat ccattaaagt tcatggatcc tcgtttccag attgtccctc
      361 ccctggctgt gtctcaagtt acagccttgt acaatccaag tctaaataat attcactatg
      421 ataaatgaca ccataactcc gatatccaca atcaatcttt gctttaaaga tacatccatc
      481 ttcaataatg ttgatgggga ttctgtaaaa tgggaaacgt gactgttttc ccgacctcct
      541 aacagtgggg gaaggaagct ctgagtgatg gctgtcagcc cacatctggc tgcaaatata
      601 aattagcctt atgtagacaa atgaaaggac cagccctgac tagaaaacag ccactcctga
      661 gcaatggcta atttatagga ctcctttctg gaaagttcct agctgaggct acagtctcct
      721 tagctatctc tttaaatgat atctgatgct gtaaataact tcagtgtggt aggaacta
//
LOCUS       KCLJ01000005             789 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 420cal ultra-conserved element locus
            uce-85, sequence.
ACCESSION   KCLJ01000005
VERSION     KCLJ01000005.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 789)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 789)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..789
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="420cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>789
                     /note="ultra-conserved element locus uce-85"
BASE COUNT          224 a          188 c          142 g          235 t
ORIGIN      
        1 ctttggctgt cagaatattt tgctctggaa cgtaggtgat tatgattcag cataaaaggc
       61 agctgcaagc cattcaactg tctttcattg gaagaaatga tcatccagcc ttctaaatta
      121 cacaccttct ttctaacttt gccaagattc atttctgctt tctctttcaa cctttgttaa
      181 aaaaagaaat ttaatgatac tattctcatt atacagctat cagttacata aaatatcttt
      241 gtttagaggc ctaataaaat tggtcatata aagaggaaat gagattttga atgtaaaacg
      301 aagctgacag tgctcttcta ttactatggt cttattagga aaaattctct gacatctgtt
      361 tatcccctgc agccaacctt gtattcagaa cacagtaatt gattcacagc atccactggg
      421 gatctaactg gctcactttt ccacaccgca ctacacaggt atctctgcag ctaattctga
      481 atgtacatct acatcgttat ctcctggtga actgtgaccc gaaacacttt ggaggcccag
      541 atgaaagtgc ttcctcaccc ctccagtgct gagggtgcag gcgtttctgc agcgcagcaa
      601 ttcacccagg acacccaatc acaaccagcc cctttgaagc cccgctcagc tgggagacca
      661 tgaatgattc atggcttctc tacacacact aaagggggaa gagcaaagct agtgtgtatt
      721 attcaggact gcatcctcaa taagcctccg tgttcagcaa attgctacaa cgtttttctg
      781 cttagtcct
//
LOCUS       KCLJ01000006             577 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 531cal ultra-conserved element locus
            uce-7852, sequence.
ACCESSION   KCLJ01000006
VERSION     KCLJ01000006.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 577)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 577)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..577
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="531cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>577
                     /note="ultra-conserved element locus uce-7852"
BASE COUNT          191 a          110 c           92 g          184 t
ORIGIN      
        1 ataatcattt gaatgcaata tttgctactt taagattttt ttccttcttc tttcagatga
       61 tcctcttgtt ttgcatgtga aaaaaatcgt ctgagattta cagccctccc aaatggagat
      121 aaagccttgg caatgagttg gaaacctgtt gtaatctgtg atccaggaaa caaagagcct
      181 cattaatgca gagactttgg tgagcctttg atgttagcta gcatagcatt cactctcagt
      241 tccatttgca tttaaacatt cataaaaaca tcatctctgc ttcctttgcc ttaagcaatt
      301 taggagtaaa gtatagcttc tatttaaaga aacccactgt ggtgaggctt agaatacaaa
      361 tatcacataa tcttcaagca gagcaaatat tttatcctac atttctggtg ggcacattta
      421 ataatattat atgtaagacc caaaataaaa catccatctt agtttcatta accttacacc
      481 acatactcga gtcaaaagag aaaacgggcc ctgttatata ctacatacca atttgtggaa
      541 ggaagagaat ccacaggatt ttacattatt gacaaga
//
LOCUS       KCLJ01000007             785 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 640cal ultra-conserved element locus
            uce-7885, sequence.
ACCESSION   KCLJ01000007
VERSION     KCLJ01000007.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 785)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 785)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..785
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="640cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>785
                     /note="ultra-conserved element locus uce-7885"
BASE COUNT          203 a          179 c          202 g          201 t
ORIGIN      
        1 aaaatgacat cagaccatgt aaccaaggac taaaaacaac taatgaaatt ttaactttgg
       61 aggtgattca gtactttctt gaaatattca gaagccccca acaacatccc caaataaatt
      121 aataaagaca gaaagcaggc cactgaaaaa gaggaaggta ataagaggca atattttgga
      181 ctaaccctat tagaatcttc tgtacagtct tctcgtgatg agccaacaga ccttgtgagt
      241 gacttatgct gcacctgtgg agataacagt tgcaggctgt ttgctctggc tgccatccct
      301 tgccctacgc ttaagccacc ctctgagccc tttgacctca ctctgtcccg gctcacatac
      361 atagagtgtc tatgagggcg ctgctgggaa gaaaaaggac tggtataacc tagaccatag
      421 gaaaaagact catgtggagc agacagagag tgggaatggc ttccatccat gtgatctggc
      481 agttttaact cctccattgt tttggagtgt ctggctggtg gccttcgtgt gtccagggtg
      541 ccctcgctgc ggttgttcct cgccgacgga ctgagcatag ctctgttatc gctgtgccgg
      601 ggagcgctcg ggctggtagg agagttcagg tccatacagc tggatggaaa atacctactg
      661 gtgtttggtt ctgcagcttg ggccctggcc tcagaaaggt tgcccacaga tttagagtct
      721 gtcagaaccc catggctctt ggactttgtc cgataggagg gactcttaga agactgtggg
      781 atggt
//
LOCUS       KCLJ01000008             592 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 753cal ultra-conserved element locus
            uce-5110, sequence.
ACCESSION   KCLJ01000008
VERSION     KCLJ01000008.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 592)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 592)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..592
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="753cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>592
                     /note="ultra-conserved element locus uce-5110"
BASE COUNT          176 a          132 c           96 g          188 t
ORIGIN      
        1 tttttgagac atccacatgc attcacaagt ttcacattga ccgttcattt gtattcccct
       61 caatgcagtt tttatccttc agaatactag acaaagcacc atcacaaaac tttgctaaac
      121 taacaaatgc agtcattttg aagtttttag tacttaaaag cacagaaaat gcaggtcttt
      181 aacttctgtt gctttaactc acaggctggt cttcctccct aacccctttg ttaacaagtg
      241 gtggtcctgt ccccctgggt ggcaggccca cccttcttca ccaagctgct gcccagggaa
      301 atgtcacttt attatcaatg ctgcttaatg aagaaggact ggacattaat tactcttgtg
      361 aagatggcta ttctgccttg tattctgctg ctacgaatgg acatacaggt aaatgatacc
      421 aagatctagt atggcatcca tgtaaactat ttctaatatt caattaagtc aaatgcattc
      481 ttcttaaaaa tgtgaaatta ccaaaatcat gctaagcagt gcttcttgga gctttggaac
      541 tatttgaaac acagggacag ccattttaat tctccaatcc ttcatataaa aa
//
LOCUS       KCLJ01000009             567 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 860cal ultra-conserved element locus
            uce-5144, sequence.
ACCESSION   KCLJ01000009
VERSION     KCLJ01000009.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 567)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 567)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..567
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="860cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>567
                     /note="ultra-conserved element locus uce-5144"
BASE COUNT          136 a          136 c          114 g          181 t
ORIGIN      
        1 gcagtgccta ccaagagttt aataaagatc tactgcctga gttaccttta gcttttataa
       61 agcaaaaaat gcaaacagct tgtaagcagc attcattacc ttgcacgcct tcagctgctt
      121 attggataca catccccctc cctccagcat ctctctcttt ttttaatatg ttttttttta
      181 atttgttttg atgaatgagt gacaaccctg acacccgatt cgctgagatt aatagaaacg
      241 acacaatatt tacgtcgcgc cgacgagcaa ttatcctgcc atctatcttt gagattatct
      301 ttctgattga aaactactca tccgtgtaat cggaattatt tggaattaga agggaattta
      361 tggcccctct cactctccct cctatttgcc tctgtctcca tccttcttcc cccttcttta
      421 agagggtcct tccttctttc agtcttgtgg atggacacat gtgctttgca aggagggctg
      481 tttctggaga tgactgggcc gtgctgtggc caagcagggg acagtaagaa tgcacttggg
      541 cagcagctgg gggatgaaag gctcttc
//
LOCUS       KCLJ01000010             591 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 968cal ultra-conserved element locus
            uce-2689, sequence.
ACCESSION   KCLJ01000010
VERSION     KCLJ01000010.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 591)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 591)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..591
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="968cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>591
                     /note="ultra-conserved element locus uce-2689"
BASE COUNT          180 a          100 c          107 g          204 t
ORIGIN      
        1 aatccccacc acagcatttg tgccatctac atctcaaaaa tccagactga gtggattgaa
       61 ttaatggcaa ctttgagact acaagtttta gtgtaattgc tttattgttt gggaaccaag
      121 atgcaatcca gttcctgtgc aaacatgttt aacgtgtgtt aatgtgtttc aaaaccagac
      181 cctctccgca aaattctgct tttcattaat tgacatcagt agcatggtac agtatttcaa
      241 agcactggcc aaatataaac tgtgtttcta atttccttac tttcctgtgt ttggaatgcc
      301 aatgttaatt tgttcccatg gaagagtgag agctgccaac cacagtttta tataaatggc
      361 tttgggctgc caacattaaa tgatacttag gaattttcat gacattttgt atttaatgct
      421 gagagaaatt gagggagatg tatggcatgt ttcaaggcaa atatttgaag aaatttatcc
      481 tttgagttct tcttatttag gataatctgt cagatattac acaaaaagct gttttgcagg
      541 gaactttgtt gctaacgatc caaacaaata attttagtta tttattaata g
//
LOCUS       KCLJ01000011             617 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 1077cal ultra-conserved element locus
            uce-5783, sequence.
ACCESSION   KCLJ01000011
VERSION     KCLJ01000011.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 617)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 617)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..617
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="1077cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>617
                     /note="ultra-conserved element locus uce-5783"
BASE COUNT          170 a          106 c          131 g          210 t
ORIGIN      
        1 aatgcacctc aatatggact tgcatcatcc cggctattct ggacctgagc cttggagtgg
       61 aaattagtgg caccacgctc tgtggtgtct tggtgatgtg gcataatgtc cattgtgagc
      121 tagttagaca ccaaactcat gtcacatgtt atctaaatag acttggattt tagtggccaa
      181 aagtggaaaa gctagagcac tattctatgt gccttagctt cctataattg agcttataaa
      241 tttctttttt aaatacttat tctcttacta ttgtgtattt tgttttcctt atagccatta
      301 aagaaagccc taaggatgat gggagctcca aatctgatat cagataattt agattgtgga
      361 cttagttaca gtgttatctc ttaccttaaa aaactcagcc aacaggtagt attgatgaaa
      421 cctttgcaat tagaagtgcg ttgattattt agtttgtggt aatctcatta taaagcagtt
      481 agttcatatg ggtgtgcagc atatatgaag attggtgagc atttccactg ctgaatccag
      541 tatggttctg tagccagtga ttgtgccttc tgtaagtggt ggagaggaat gcaaatgaaa
      601 cctcttcggc tatactt
//
LOCUS       KCLJ01000012             765 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 1186cal ultra-conserved element locus
            uce-2619, sequence.
ACCESSION   KCLJ01000012
VERSION     KCLJ01000012.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 765)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 765)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..765
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="1186cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>765
                     /note="ultra-conserved element locus uce-2619"
BASE COUNT          208 a          183 c          131 g          243 t
ORIGIN      
        1 gacagcttta tggtaattct gtgtatcgcc ccctctcagt ccattgagtt aaaagcgaaa
       61 gcacagacat gaggcaaaca tggaaaatgc cattactgtg tgctgagaaa agcagcaacc
      121 tggtgtctat gaaaatttaa taaccattga catttctttc tgcaaatcca ggacaaactt
      181 ttatttgaca accatatgtc ctttaaaaga gatccataag tcttcaaata aaccagactg
      241 ttcttccctc tctctttccc tctctctctc tctctcaatc cctctctgtc tcccctttta
      301 atgcccacat ctccactatc aggaacaaat atgatttctg attgaacatc actttatttg
      361 ccagttctgt ggtcttttct tatcttgttc cacacttctc aggctttgtg gttaaattat
      421 gtattaaggt caatgtcaaa acacggaaga tctgtaatct acagggagct cccttttatt
      481 cgttattaca gtgaaggctg agtgcaactg tcagggagct tgggatgtgc tcagcatgga
      541 ggcttgctac acagcagggc tctacaaagc ctctctcctt gttctcccag gacgaaccct
      601 tgatagattt acccagataa cccatctcac tttaaagctc tcttgtctct gcttcaatct
      661 gaaagctgtc aagtgcacct atatagtaat gtcataaatc aaacgtaaaa tgtgtacact
      721 ggagacactg caagtgtcat gtattcactt gtactttgag atctt
//
LOCUS       KCLJ01000013             729 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 1299cal ultra-conserved element locus
            uce-3329, sequence.
ACCESSION   KCLJ01000013
VERSION     KCLJ01000013.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 729)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 729)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..729
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="1299cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>729
                     /note="ultra-conserved element locus uce-3329"
BASE COUNT          198 a          170 c          205 g          156 t
ORIGIN      
        1 tgaggaaaat tgctgtaaat tttagcagaa tgtaatgttg taactagtga tgtaaaacag
       61 cttttgcagt gcttgaactt ggatcctttc agatctcagc cacagtggat tgggagacca
      121 ttatgagaat tcccactggg gacagcagcc cgctttcagg agtgaaggca actgcagctg
      181 ggataaagtg ataatagaca ggactgacaa ggaagcgtgg ccttccatta ccggagctga
      241 gactgagtct gcctcagaat gtactacaga cactgactct gcctccaact gtggctcaga
      301 gaacagtagc atggctacag ggagtgccca aggcaacttc actggacata caaagaaaac
      361 taatggcaat aatggcgcca acggagcact cgtccaaagc acttctaacc agagtgccct
      421 tggagctggt ggagccaacg gcaacggcag ctcggccagg gtgtgggggg tggctgcggg
      481 ctccagctct ggcctagctc actgctctgc cagtggtggg gatggaaaga tggacaacat
      541 gatgggagat ggtagaagtc agaactgctg gggtgcttcc aactcgaatg ctggcattaa
      601 tcttaacctt aaccctaatg ccaatccagc tgcctggcct gtactcggac atgaaggaac
      661 tgtgggagca ggcaaccctt ccagtatttg cagtccagtc agtgccatag gtcagaacat
      721 gggcaacca
//
LOCUS       KCLJ01000014             772 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 1410cal ultra-conserved element locus
            uce-7738, sequence.
ACCESSION   KCLJ01000014
VERSION     KCLJ01000014.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 772)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 772)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..772
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="1410cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>772
                     /note="ultra-conserved element locus uce-7738"
BASE COUNT          219 a          143 c          157 g          253 t
ORIGIN      
        1 aaaaactaat aaagtagtaa tctacagtat tttattattt agaaccctag ccttggggat
       61 atgatttgca aggatatatc tcaattgagg gtgtacatgt gagcagcctg ggtgaatata
      121 tctgtcagtc ttttctgtag tttttttctt tctaccaaat gctgtctgca ttcagtccat
      181 agaaacacta ccacctcttt aagtggtaat gctccctgca gagtttttag cctgtaggag
      241 atatgattag ggggtgatag tgttaagcac tcctcctgta tctgctggcc cactatgata
      301 accttagggt tacaatgcat gtctgacaaa tacaattcca ttgtgactag cgccttatgg
      361 caatttagaa ggcttattca tcattttaca acagacttct gtcagggatt ttgcttattt
      421 gcccttcact ggtgtacagt agttgtaggt ttatctctag gagtccagcc ctaataacca
      481 ataacaaagt gcttaagctc taagcttgtg agaaatggac ttacattata ctccaactgc
      541 accttagctc tcgactgata agacaatgtg tctctgagag aaggaaggat ttgtatgaac
      601 tgatccttta cagtttggtt ggtagaagat acgggggagt acattgtgtt ctaaccatcc
      661 agatcccagc ataaaatgca tccttgctat cattaggaat gtttccttta aaatatgaaa
      721 gtgaagagat atcttgcctt ggaaattgca ctacaaagtt gtttgtaacg at
//
LOCUS       KCLJ01000015             715 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 1523cal ultra-conserved element locus
            uce-6409, sequence.
ACCESSION   KCLJ01000015
VERSION     KCLJ01000015.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 715)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 715)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..715
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="1523cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>715
                     /note="ultra-conserved element locus uce-6409"
BASE COUNT          235 a          125 c          137 g          218 t
ORIGIN      
        1 gaactgaata aatgggataa tctaattggc cacattgcct agcccaaagt aagtatggtt
       61 aaaaagtaca ctcatgtaat aagtaaatct attagaaact gaacttctat ttcggaataa
      121 aaattatagc aaatggggag gatgatggta gatatttact aaaaaacaca gacaatatga
      181 aaggattaaa atgctttaat cagacaaaaa agggctttgg ctacttgatt agggctgatt
      241 tccaccatct gcttatactt actgaggatc tagccctgac tgaacactaa tttgtgcact
      301 tcctagaaat tgaaatctct cagcaagcaa attaacaaga gcagggattc agcaataatg
      361 gagctcctcg gcttttgttt ccctctgaca gatggacagg gtgcgctcaa attgaattca
      421 gctttaattg cattgtgcca tttaaaattt tatctgctcc acagattttg tttacaggtt
      481 tcaggattcc aaacctttgg aaattttttc agccctgggt gaaataaaga gcactataat
      541 tctgtgtgac tagtaggtgt tcattaccac tctttgccct aaagggtggc atgctgggca
      601 aagaattcta ttttcaagcc ctaaattgat gggtggagaa gtacaatttt tctcactgta
      661 aatgctctct tatctattca taaacagaaa tattgttaaa agctggccta gaaaa
//
LOCUS       KCLJ01000016             439 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 1742cal ultra-conserved element locus
            uce-3106, sequence.
ACCESSION   KCLJ01000016
VERSION     KCLJ01000016.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 439)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 439)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..439
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="1742cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>439
                     /note="ultra-conserved element locus uce-3106"
BASE COUNT          148 a           51 c           74 g          166 t
ORIGIN      
        1 tttgagttac atttcagtaa atgattgcta aagacatcat actaggaaca tatgcaatgt
       61 ttttattaca tagttctaca gaaagttaca gaattctttg ggttctttgt aatttactga
      121 attggtcaaa cacaaatgac caaaagttgt tataacatag ataatttttg ttctattcca
      181 gatacggaat gaaaatttgc atttaaaatc tttgtgaatg ttttcagaaa tgaatagata
      241 acagtactaa actgaagtct ctaaagttat gtattcataa tattgcatag tagtatgctt
      301 aggctttact atgtactagc cttttgttgg atttgtgtac gtattttacc tatgggtttt
      361 aatgataaag tgtatgactg ctttgcatat aagtccttat gactttaaga tgttaaaaaa
      421 taaagaaatg gaatggtct
//
LOCUS       KCLJ01000017             497 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 1844cal ultra-conserved element locus
            uce-5837, sequence.
ACCESSION   KCLJ01000017
VERSION     KCLJ01000017.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 497)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 497)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..497
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="1844cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>497
                     /note="ultra-conserved element locus uce-5837"
BASE COUNT          134 a          101 c          119 g          143 t
ORIGIN      
        1 agagattgca ggaaagcttg ttgcattttg ccttgaataa aatactcaag cccccagtcc
       61 ttaatggatc agtactttgc ccgtatgcgc tccttgatgt caagtaagga attgccagca
      121 aggattcgtt tcctgctgca ggtatgatga ttttcttgca aaatagtctt gaatcctttc
      181 aaggatactg tggagttgag agaacacaac tgggttcctc gcaaagcttt tcttgacaat
      241 ggaccaaaga ctatcaatca aatccgtcaa gatgcagtaa aagtgagtgt ttgctgtgca
      301 cttgggagta gttaaccaga tggacttctg tagttctgac caaaattaaa aggatctggg
      361 agtttttatt cctgctccta tgtctcaagg gatgcgaagc gacttctttc tggagggacc
      421 cttcatgcca cccaggatga aacttgacag ggacccactt ggagggcttg ctgatatgtt
      481 tggacaaatg ccaggta
//
LOCUS       KCLJ01000018             420 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 1951cal ultra-conserved element locus
            uce-6596, sequence.
ACCESSION   KCLJ01000018
VERSION     KCLJ01000018.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 420)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 420)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..420
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="1951cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>420
                     /note="ultra-conserved element locus uce-6596"
BASE COUNT          136 a           59 c          102 g          123 t
ORIGIN      
        1 aggctgctct gaaacagcga gaaggggaaa tattacagca taagtattga ttgctgcatg
       61 cagaggtcac tgtgcgggga ttgcactttt atcacaaggt tcttgcgaaa ggtgaagttt
      121 tgccaagatc ctaataataa ctgtggagtg ctagttgggg cagggggagg aaaattattt
      181 tttattctta gtacctcaag gctatacatg gcaattacta ttgcagaggc aataaagaag
      241 ttgttaatta caggttttat acccttgtag cccaaagtaa gaatgaaagg actaaaggtt
      301 acaagaagaa agaaattgct ggaggctttt tagtgaaaca agttatagtg ggtttgaggg
      361 gaaatttcaa tctgatcagg ataaaaactt gaaatcttac ttcctttata gtccttcata
//
LOCUS       KCLJ01000019             634 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 2168cal ultra-conserved element locus
            uce-5238, sequence.
ACCESSION   KCLJ01000019
VERSION     KCLJ01000019.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 634)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 634)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..634
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="2168cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>634
                     /note="ultra-conserved element locus uce-5238"
BASE COUNT          208 a          128 c          126 g          172 t
ORIGIN      
        1 gcactattat aaatcaatag atgacaatac aggtaggatt tctataagac cccgttttgc
       61 agctataaat ggaaaaacat atgaacgtct tcaatagagc tgaagtttaa tattactatc
      121 caaattccat tttatcccac tgtcactgcc accaaaggag gggttttatg ttggagataa
      181 tatgatactg cagtataagc cctcctcaga tttcaaacag gtcaacttgt caaagctttt
      241 taagggagcc aattacatta attttccaca gcagagaaat acatatttca tttctatctc
      301 ccactagaga tggggcccag ggattctgtt tcgaaaggct cttatcacta agtaacattc
      361 gtacccccaa aggaaccttt ggcagtcact ggtccattga tataattgag caaggtatga
      421 gctgtctgac actgccatgg cattgctcaa tagcactgtg cactaagcac tcggaacaat
      481 gaagcttcag cagacggcca cattgtcaat aaatttcaat tacactaatt gccaagagtt
      541 caatgagtgc actttcaaag gggaggggga aggacggatg gaagattcta tgtctaccag
      601 agctaaagaa taggatgcaa taaataaact gcag
//
LOCUS       KCLJ01000020             824 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 2385cal ultra-conserved element locus
            uce-4036, sequence.
ACCESSION   KCLJ01000020
VERSION     KCLJ01000020.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 824)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 824)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..824
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="2385cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>824
                     /note="ultra-conserved element locus uce-4036"
BASE COUNT          257 a          154 c          168 g          245 t
ORIGIN      
        1 gaaagattat cctaatttta ttagtggtga gtgtctatgt tgttcttagc atgtcacctc
       61 acttgttcaa cagaaaacta agctacacaa catattgatc atctggcaaa ccaaagtagt
      121 agtgatctgt aatccaccaa gcagttattg actttatccc agttcagatc cacaaatgca
      181 aatcaatgct gtataatact attttaaaga ttagtaatta tgtagtaggt ccgatctact
      241 ttccccctaa atgtatccaa aaataaaaca ctctaaacat cttacaaagg agaaaaagga
      301 gaagctgatt taatggtcta atgaggccat cttccagaga cttgttttgt gtagggcttg
      361 ctttgacctt tcgctttgct caggagccca acgcttcatt tttcacattc ttgcaattac
      421 gttaacgctt caagcatttc tgactccaag tcagctagca acaccaggca taactcaaca
      481 ctgtgagttt ttctcctctc tgtagattca ttaacaggtc accggggtcc caactgaaat
      541 ttaaaactga ctggttctgt tgggttagct gagttatagc aagggagatg gcaggaaagg
      601 gggtgagaga aggggagggg aaagagaaga ccctggggtt tttgccaagg aatatatgtg
      661 taaaaagtct aagtggaaga ttaaaaggtg tgtgtagctt tatcatccac ccttttcttt
      721 ggagaggaaa aaacacatct gaaagtcttc tggggtatgt tttctttatt aaacaaagtg
      781 aaaacagcca ctgcctttac ataaaaggct aaatgacttc taga
//
LOCUS       KCLJ01000021             572 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 2498cal ultra-conserved element locus
            uce-3046, sequence.
ACCESSION   KCLJ01000021
VERSION     KCLJ01000021.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 572)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 572)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..572
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="2498cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>572
                     /note="ultra-conserved element locus uce-3046"
BASE COUNT          176 a          100 c           99 g          197 t
ORIGIN      
        1 aaaaattatc agaattgtta aaattattta agatgttaat attctccaaa ttaagaagct
       61 gttattatgc tgtaaaaacc tgtgatagtg taagttgctc ttacataaat aaataaatga
      121 ctgatattac tgaaggcttt aagaaaaaaa tggaagaagt cttttatcct ggtttttaga
      181 gggcatcagc agcttgcttt tatgaaaaag taacagctaa atgcactgca aataatttgc
      241 agtaatccag ttcagtgatt catgtgtctg ctttaatggg tcataattca ggataaagta
      301 actgagtgca gtcagagtgc agacactgct tatgccaggg acagtatctc ttcataaaac
      361 acacctcagc agaagcagtt tgccagcccc ctaataccct ctgatgtttt gatgtcctgc
      421 atatttttcc gattaagttt tgagtgccat gtttttagtt gtatttccac attcattatc
      481 ctcacgtaga cccttcagcg ggtttgccat atatgattat ttttttaatg atgcctttct
      541 ttccacttca gcagtttaat aatctagcac at
//
LOCUS       KCLJ01000022             445 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 2607cal ultra-conserved element locus
            uce-2833, sequence.
ACCESSION   KCLJ01000022
VERSION     KCLJ01000022.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 445)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 445)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..445
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="2607cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>445
                     /note="ultra-conserved element locus uce-2833"
BASE COUNT          127 a           85 c           80 g          153 t
ORIGIN      
        1 attagcctga cctgtattta ctcttctttt ctggaagaat tagcttgttt ctcaaagctt
       61 atgggaaaca ctaacagtaa tgaagcagaa aaatgatgaa tgttaaaact ttagggtgat
      121 ccatagatgg ttgtaaacct ctttgttgcc catgtacttt tgatgagctt gcaaagtttt
      181 aaacctccta aattttagac agggcagttt tatttctttc aagctacagt ggaaataatt
      241 tccttatcta tcatttagaa tggtttaata ctttcattaa tccacacatc ataaagcagc
      301 gagtgatttc tatacgtatt ccaatccctc attgtgcctc ccagcaaatt tttgctgatt
      361 ttgaagttaa acttaaggcc agtatctcca cagtccaggc tagttgtgaa gggagcgatt
      421 taaagggtgt cacccctgct ctgtc
//
LOCUS       KCLJ01000023             520 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 2714cal ultra-conserved element locus
            uce-6082, sequence.
ACCESSION   KCLJ01000023
VERSION     KCLJ01000023.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 520)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 520)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..520
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="2714cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>520
                     /note="ultra-conserved element locus uce-6082"
BASE COUNT          175 a           95 c          103 g          147 t
ORIGIN      
        1 agaagataaa tggaaaagga aatcttaata aggttctttt ttggaggctg ctgtattaaa
       61 ttaaagtcac acataggttt caaagaaaat cgtatgtcgg tggaatggtg agcccacctg
      121 acaacgcatg ctaacagaat tgtaaatgta aagggtaatg cttgtcactt cctgacagct
      181 ctaaatggcc ttttagttca gtacgcagag ctgtcataaa aaaacataaa aatgcatatg
      241 cagacagctg aaactgcaat gcacatcatt atctgcaaat ggtataagta tcctgaacaa
      301 agggccttcc agtttaagga caagcataag acatttttct gcctctagcc ttaaaacaaa
      361 gtgctgtcaa gaaaacaaga ttctcagtgc cagaactgag gattttctgt caatcagcaa
      421 ggtgctacat ttgtacatat ttttctgacc ccaaatatga gaagagcatc cttaacagat
      481 gtgtatttaa cttctggcag atacatctgt ttcttctggg
//
LOCUS       KCLJ01000024             592 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 2825cal ultra-conserved element locus
            uce-3942, sequence.
ACCESSION   KCLJ01000024
VERSION     KCLJ01000024.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 592)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 592)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..592
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="2825cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>592
                     /note="ultra-conserved element locus uce-3942"
BASE COUNT          171 a          133 c          127 g          161 t
ORIGIN      
        1 gctttatggc ttggtaagca acaaatcctt catgacagat caaacgtcag cctcattaac
       61 tttctgcttc ccacagccac ccttctacag ccggaacacc gcagaaatgt acgacaatat
      121 cttgaacaaa cccttgcagc tgaagccaaa tatcactaac tcagctagac atctcctgga
      181 aggcctcttg cagaaggaca ggacaaagag actcggtgcc aaggaggact ttgtaagtga
      241 gaacaggcca ggatgactgg gactgtttac atttctctta acagatggag attaagaatc
      301 acatcttctt ctccccaatt aactgggatg atctcattaa taagaagatt acaccccctt
      361 ttaacccaaa tgtggtacgt atcacttcta attattgggg tgcccaggag ccagggggat
      421 gtgtgtgttt ggggaatgga acttaaacaa agtagtggta attgactttt tggtgatgat
      481 ccatctaaat ttggtgttgt ctcgcatgct tcatttgcat ggcaatttta aaatactgcc
      541 cagcccattt taccaaagtt aaggttcagg gagcaagtag cttccctatg gc
//
LOCUS       KCLJ01000025             611 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 2934cal ultra-conserved element locus
            uce-7865, sequence.
ACCESSION   KCLJ01000025
VERSION     KCLJ01000025.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 611)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 611)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..611
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="2934cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>611
                     /note="ultra-conserved element locus uce-7865"
BASE COUNT          155 a          135 c          131 g          190 t
ORIGIN      
        1 ctgttctttg ttcaaatgac tgagtgcagc attgcttccc tatagataca tctaagggct
       61 gctgaaggta acagtaatcc cttcctttgc cttaccagac tctgggggga tgtcagtcca
      121 tagattgtta gagcttcttg ttgttttgtg cttcctgtag cagaaacagt atgcacctta
      181 cttgtccaga ttacctctac cttccttgtt cctcccagaa atcacctgct aagaagctaa
      241 ctaatgcact tagcaagtct ttaagctgtg cttccagccg tgaacctttg cacccaatgt
      301 tccctgacca gcctgaaaaa cctctaaacc tggctcatat tgtgtaagta tctgtgtgct
      361 gtagacaaag taagctttgt ggctctgaac aaagcaggag gcagatttgt ccagctcaat
      421 gcatcacaag tgcaaatttg ggggatattt agtgaaaagt gttcttctgg tgtgacttga
      481 aaatcaatgg gctactggga cacaacattg taatgtccat tctccttgag agatgtccat
      541 gcaattttat ggagtttcag cactctggga tgtattgatg ctgagaacat cagttctgtc
      601 atctagagac t
//
LOCUS       KCLJ01000026             481 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 3150cal ultra-conserved element locus
            uce-2758, sequence.
ACCESSION   KCLJ01000026
VERSION     KCLJ01000026.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 481)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 481)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..481
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="3150cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>481
                     /note="ultra-conserved element locus uce-2758"
BASE COUNT          136 a           65 c          120 g          160 t
ORIGIN      
        1 attatttgaa ttagaaaact ccttcttgat aaaagtcaag ttcagtggct catctgagtt
       61 ttcagatgat gaagaaacac tgttgtgttc taaacttaca ctattagctt ttgttttgtt
      121 ctttgtggct ataatacttt tgggttcctt catttgtttt ggtaaagaca agtccaatgg
      181 ctcagcctga agctcctcag aagagaaact gtttggagtg taagaactac tgtgggagtt
      241 tttagaagat gtggaagaaa gatttaaagg agaaggagta ttgctcctag agtggtccaa
      301 tttatcaact ggcttaatat tggtaaaatg aggaggtttt gttagcctga gaggagtatc
      361 acaattagta acactgttat ggagttcagc tatagatggt gaagttatag agtccacagg
      421 ctttattgga gatctggctg acaaagagtc tttagtggga gtgttgttgg tggcagccag
      481 c
//
LOCUS       KCLJ01000027             566 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 3258cal ultra-conserved element locus
            uce-3823, sequence.
ACCESSION   KCLJ01000027
VERSION     KCLJ01000027.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 566)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 566)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..566
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="3258cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>566
                     /note="ultra-conserved element locus uce-3823"
BASE COUNT          196 a           83 c          101 g          186 t
ORIGIN      
        1 aaaattaaaa atgcaggctg ttattggagg ttcaagaaac aattggaaaa tgtatgttta
       61 catatagcat tttaaaaatc tatataaatt tatattgttt gttctttgct tttctctgat
      121 agtaagaaag cagctgttct attgctttgg actttgactg gctagattgc aaggctcaat
      181 aatctgtctc agctcagggt taagtgatgg aattcattta aatgccccag aagtaatcat
      241 ccacaaagag tacattattt cttttttatg aattttcaaa cctaatactg atgggtggca
      301 tgcaattaaa cctgatcaat atgtaattta ggtgggctga catgttttca aattctcaga
      361 atatagattc tttcaatatt gcaagagctt agtgaaatac tcagccctta tgaaacagcc
      421 aaaggagttt agtacagtgc ctgttccaaa gacaaatggt gtagaaatta aagttacaga
      481 cactaacaaa gaaataagta tgaggcctca tttaataggt tcaaagcaac cattctgata
      541 gaaattaaca tgtatatgta aagctt
//
LOCUS       KCLJ01000028             586 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 3365cal ultra-conserved element locus
            uce-4344, sequence.
ACCESSION   KCLJ01000028
VERSION     KCLJ01000028.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 586)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 586)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..586
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="3365cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>586
                     /note="ultra-conserved element locus uce-4344"
BASE COUNT          161 a          132 c           86 g          207 t
ORIGIN      
        1 atgcttttta ctggcctatt atttctcttc atggttacta aatgcacaca cacatgaatc
       61 aaaacaccta taaacaagaa gtttttctct ctacctgtac acagtgaact ccctttacat
      121 ctcattttgt tctccctcag cattgattga ttgattgctc acagcttgca cgactccctg
      181 ctgccctaga tccatctctg ctcttcacac tccatacagt tcctgcatca ttgactttct
      241 gccagccatt ttgctgccag tgcatgagct gacatttaat gatctttaga cgcagtaatg
      301 tcacatttat cactatttat cagttgtgac agacctaaat tctaatgcaa acatgaaatg
      361 cagactgaat ccagtccaaa cagtgatatg tttttgagtg acatccatca aggcacattg
      421 agaaagaagt gaaaaattac ctgtttccta ttatgtttta actagcaggg gtttagtttc
      481 tccttgcagt tttcagagaa accccatttg gtttctgaaa tgtcatctct tatttgaatg
      541 ttaatttcca gtattcctag attttacatt ttcaatttaa ttgaat
//
LOCUS       KCLJ01000029             775 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 3472cal ultra-conserved element locus
            uce-3725, sequence.
ACCESSION   KCLJ01000029
VERSION     KCLJ01000029.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 775)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 775)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..775
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="3472cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>775
                     /note="ultra-conserved element locus uce-3725"
BASE COUNT          255 a          147 c          196 g          177 t
ORIGIN      
        1 tttaaaatgt ttagcagctc acctgggcgg ctttgatata cctgaaataa gtttgtcgct
       61 tcagactttg agctccataa ccttgcgaaa agcaacacac agccatccac gcacaaaggt
      121 cttacctaat acaccactag gttcaatagg gtactcaagg attgatgtag ctggtgccag
      181 cgtgtagggg tactcgtatg gtgtgtaaat taaaccggcc tcgggtccgg gtggaactat
      241 tgcagcggtg ggatgaggag ttccgtttgg catgacagcg gtttgtattt gtctgatcaa
      301 aggcattatg gtagggccag ctggcgtagg agtacgcagg gcagctggtg ggagaacagg
      361 cgcaggccca gtaataatcc ttggagcctg ggctgttgct gcaagagaaa aggcaagggc
      421 tgctacagta agcaaagaaa ttcagaggaa agtatggaga tagcagtaca aaacgtggaa
      481 agaatgggaa aaagtaggaa agaagaaaaa taaaaggaaa tcattagtac atgcgctgat
      541 cacacagtgc caaagcacac cattcaaatg caaacagctt tccattttcc agtgtgatta
      601 agtatgaaca tgcaaaataa aaaagccatt gtaaaacagt gaggtagatt tctcaaacag
      661 gttacacagc acgaaagctc catttagacc acatttcttc atttatgcta tcaagactgc
      721 atgagactga gatgcatgca ggaaatacaa ggaaaatact atctacagag tacaa
//
LOCUS       KCLJ01000030             445 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 3583cal ultra-conserved element locus
            uce-4995, sequence.
ACCESSION   KCLJ01000030
VERSION     KCLJ01000030.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 445)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 445)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..445
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="3583cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>445
                     /note="ultra-conserved element locus uce-4995"
BASE COUNT          132 a           64 c           70 g          179 t
ORIGIN      
        1 aaaaatgtag actattgact attgcgcgta aaatattttt ttaatgtcaa tatttttaac
       61 ctgaaataaa ccttgtaaca aattcatgta ttctgggcag tggaaattat ttccgttaac
      121 tctcttttct gcatatcatc aatttgcttt ttactcatgt ttctcctact gtcgctgtaa
      181 gcttacttgt tgttttttct ttccttttct tcatgctgtc gtttagagcc ctacagagag
      241 acaagtatgg gagtaaagct aaacattgca tatcaaatgt aatttttttt agttcacttt
      301 tattgcatca catatagatg atgtagttaa taaaggaaat taatctcaca gttttgaaat
      361 caaaagacta tgaatagaca tgtatatata tgtgtatgcg tgtgaatgta tagatgagat
      421 tagatgatgc ttcctttgtt tattt
//
LOCUS       KCLJ01000031             406 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 3680cal ultra-conserved element locus
            uce-848, sequence.
ACCESSION   KCLJ01000031
VERSION     KCLJ01000031.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 406)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 406)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..406
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="3680cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>406
                     /note="ultra-conserved element locus uce-848"
BASE COUNT          124 a           70 c           64 g          148 t
ORIGIN      
        1 tttcatcctt ttcagttgca ggaagccacc caaccacaga acactcgtat gccagtggta
       61 cttagtacct cttgtatata ggttattgca aatattgttc tgaaatgctt aacttcagtt
      121 tttttaagta attaattgtt ttaaatctat tttgtaaaga tataaaaata cagtagaatt
      181 tctggagtac agattaaact atttgcacta acacacgtga tgtgcatgat ttaataaaat
      241 aactttactc tccctatgca tgtttgagtt gaatgtcatt tgaaaacaag agattcatga
      301 taagtttctt ttgcactaga tattgccaca gttgctaggc accatgtctg cagcatgtcc
      361 agtaagagca aaagactttt ttttaccttt tatttcacat ttgtgc
//
LOCUS       KCLJ01000032             595 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 3785cal ultra-conserved element locus
            uce-2746, sequence.
ACCESSION   KCLJ01000032
VERSION     KCLJ01000032.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 595)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 595)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..595
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="3785cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>595
                     /note="ultra-conserved element locus uce-2746"
BASE COUNT          182 a          103 c          104 g          206 t
ORIGIN      
        1 tattttagta tttaattttt ctcaacatct atttactcat tttatggggc tgcttgcctc
       61 ttattgatta aggtaattgt gaatccataa cagaggacag acttataccc taaaggggtg
      121 ggattatatt atgcaaataa ttttaaaata tttttaagca ggcattattt cagcatttag
      181 atattggcta aagcagcttt aatatgcaag acaagatgtt aggtgcttag ctgatccaaa
      241 tgccagtcta tagatttgaa agactaaaga tcacatcact gggaggttga cagaagtgac
      301 actttgcaaa gtgccaatga tttatgccaa tgtcttgctt gatgatactg ttatagacag
      361 cactgtcatt acaaagtccc taacgacttc agtctacatt tatggtgcac aaattatagg
      421 tgagcccaaa gatcgaaacc ttcctgactt ttagatttca atgaccaagt aattctcact
      481 aggttcactt cttgtgtgtt gcctgatact tttttgtttc agcttcataa ttagattgca
      541 gtaacaagga caaaaaatac attcattcta tgttttttag ccttatctcg caagc
//
LOCUS       KCLJ01000033             594 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 3892cal ultra-conserved element locus
            uce-2030, sequence.
ACCESSION   KCLJ01000033
VERSION     KCLJ01000033.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 594)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 594)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..594
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="3892cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>594
                     /note="ultra-conserved element locus uce-2030"
BASE COUNT          198 a          117 c          105 g          174 t
ORIGIN      
        1 gaatactaat gaaactcctt agttagcttt ctttgtgata agaataaaaa attggagcta
       61 cgttcctcta gaatctcaag caatttttgt cctttattct gatagaaaga ttactgacag
      121 tagagaagga gagcaaagta atttcataaa atatctgcat ttttaagaat gcttttgttg
      181 caaaaatgtt ggtgtgcaat ttcttcaatc tacttttaag gctgtaaaga aaaagtacct
      241 atttgttctg cactgcaaca atgccagctg cattcaatca actaaaaagc tgcaagccat
      301 aaaccttcct ccacagctat agaagaaaaa aaggcagggc cataaaaatt catcaggata
      361 atgtagagat gaggcgtgtt tgaatcacca tccctgcaat caaccaatca ctcatcctgt
      421 ggcatttaca gcacatctca ttcccctgtt ccttaaggac aattgatttt cctgattcca
      481 ttagcataac ggcaaggaaa atgactgcag tgcaatattt ctggaaactt ccaacaagta
      541 tgctgtgtgc tggagtgtga ccataataat aagctaccta gctagcaact gcgt
//
LOCUS       KCLJ01000034             680 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 3997cal ultra-conserved element locus
            uce-5645, sequence.
ACCESSION   KCLJ01000034
VERSION     KCLJ01000034.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 680)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 680)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..680
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="3997cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>680
                     /note="ultra-conserved element locus uce-5645"
BASE COUNT          212 a          135 c          126 g          207 t
ORIGIN      
        1 tttgcacaac tagattttcc cactttgcca catgtgtgca cagaataaac gccttctctg
       61 ctctgaacca gttgttttaa aggttaatgc ataaacccca gaaacagatg gaaaatttag
      121 cataaaaagc aaaatggaat caccttcagg aactttgacc atttaggagt ctggatgggt
      181 attgatttga ggtgaatatt ctaaagtttg cattaccctt tgaaaagtgc taatgtagtt
      241 cttgtcactt taaattaact ttagacgaga gggactgaca gaaacatgaa gatgtgtgaa
      301 ctatatttga ctgatattct gtcaaatatt gcatggggtt atgatccaca acttttccca
      361 tctgctgctc aaacctgaat ccttgaatgc acaatggatt aattaccata ttttgttctg
      421 atttcactta aaagactgtg aatgttaaat gtacccttac ctgccttctt tctgagggta
      481 aggtatagag gagggaacag ggtgttcttt agcaatttac acccacacag aatgacatat
      541 ctcctcaaat aattagattc ccagaagtta accagaggag cacagcactc agaatttcat
      601 tcactccttt tccccctcag taataaaagc aggagtgctg atgtagcaca ttcaatccct
      661 gtgctttaca agcagcagta
//
LOCUS       KCLJ01000035             684 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 4108cal ultra-conserved element locus
            uce-539, sequence.
ACCESSION   KCLJ01000035
VERSION     KCLJ01000035.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 684)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 684)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..684
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="4108cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>684
                     /note="ultra-conserved element locus uce-539"
BASE COUNT          218 a          132 c          113 g          221 t
ORIGIN      
        1 cccacagcaa tagtaatttt actttgatct catagcagcc aaactattaa atgtaagcat
       61 gctcataagc aaggtacaag gcaggcacag cctatgattt ctagtggaag gtcataaccc
      121 agattttttt tttaaataac tattacaatg aggaacagag tatagccaca aaaggaatag
      181 ttataattta tgcctgactt acttcagcag aatatagttt atttataaac tgcttatggc
      241 aaactctgta tgcccctgtt ctatgcatgt gctgaactgt cttctggtaa attatttaaa
      301 ttacacctag cagtaattcc tgaggacttt catacttcat tttctctatt aatgtaacag
      361 ggaaaagctg ctttgcaagg attgctctaa attcccagag tgtgagttcc aaactctgta
      421 tgtgttgcat tatgcctgtc aaaaaacttg tcttctcctg aaatttatta ctgaagtctc
      481 tccactagaa ctactcattg aagccttacg gaaagctcat acatgattta agaagctaac
      541 agcactgaaa gaaataggtc aggtccctga atttaagcta ccttcactta ttacttatgc
      601 aagattatgc ataatttagc acactgctga atatgcaagg gcagaataat tgtttaccaa
      661 aatatttact ctgtgttcgt acct
//
LOCUS       KCLJ01000036             840 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 4217cal ultra-conserved element locus
            uce-987, sequence.
ACCESSION   KCLJ01000036
VERSION     KCLJ01000036.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 840)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 840)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..840
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="4217cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>840
                     /note="ultra-conserved element locus uce-987"
BASE COUNT          292 a          147 c          132 g          269 t
ORIGIN      
        1 ctgtaacctt tctatacttc caccaaaaaa tgacttgcaa aattaaatgt attctttctt
       61 tgctttgcat atttagtgct atccaaagca cagtaaaaat atactccatg ataagaccta
      121 cacacaagat gttaaaaagt acactaactt ttactaaatg ttacaatcaa tgatgtaact
      181 tatgtaagta gggttgcttt gtcatatatt gatagttacc tcactttcac atccacatta
      241 acttgatttt aaatgcaatt aatacatata gtcaaggaag actaatggac tacattctgc
      301 acttaacctg gtggacattt tcaaatggca caagtgacca gtgcaaacct attttgcatt
      361 gtaaacgact aaataaatct taatggatta agaatgatca gctatcaaca cacaagggaa
      421 attaagtgct gaaatgccta cattgattat tttaaattat tagccttact ctgttcttga
      481 atttgtatgc ttttagtgag ctttaacaca tttacaagac ttattgacta taattacaag
      541 agaattcaag taatggacac atcaattata agcaacatgt cttgaccaga cagttgcata
      601 aagaattcta aagagagctc cattagcatc ctccccctta gttttattca gttttatctg
      661 ccgtaagagg gcatattaag ggcttataca gctgttctga ccatgtgaac atgagcatcg
      721 aagacttaac actgcattcc aagttggata ttagctgaag caatacagat aactacgcta
      781 ttgacaggac agaagtaatg ctgaaagtat taagtatgtg agttattggt atacatgaat
//
LOCUS       KCLJ01000037             764 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 4328cal ultra-conserved element locus
            uce-1232, sequence.
ACCESSION   KCLJ01000037
VERSION     KCLJ01000037.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 764)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 764)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..764
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="4328cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>764
                     /note="ultra-conserved element locus uce-1232"
BASE COUNT          218 a          157 c          158 g          231 t
ORIGIN      
        1 tgctaaattt gctttgagca tggagtttaa agtttcagat gcacaggcag taaatgtggc
       61 tattaagaaa ccgtgtattc acgctaactc cttggctgtg gcagttttag tgcattcact
      121 gctggcagtg gacatcaagc caggaaaatc caactcctga tgcaaaagga ttaaatccag
      181 gcactgccaa aaattttttt tgtactctgc agtttgtttt acttagggaa acggcctggt
      241 cataccctgc agcatgcatt cattacagtg atctttgact ggcagatgca gagtaataag
      301 atgcatattt tagtgcttat tataataccc tgtccaaaaa caacttgaca aatttgtgat
      361 ttcgacagta tctcattttg ctggctgcag tgctctgtga ttgcctggtc cacgtggctt
      421 ccagattatg cataccacca atactgctca ttaaaatggc cacagttcac cagtttcggt
      481 agcttggaac gaacttggaa tgaattatta tacaacaaag aggctgctgt catgcagaac
      541 aaaagacaag caaaagagag cttcggctta atgaggctaa gtgagtgtct cccctgcatc
      601 accagctact tgatggcctt tgagcatgga tttttttctc cacaggccaa aacctttggt
      661 ctattatttt gtgtttatgc accttgaggc taatatacat tttaatatgc tgcacatgga
      721 gaaaaaaatc agccattaga ttagaacatg tgcactccct gtta
//
LOCUS       KCLJ01000038             395 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 4439cal ultra-conserved element locus
            uce-6373, sequence.
ACCESSION   KCLJ01000038
VERSION     KCLJ01000038.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 395)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 395)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..395
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="4439cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>395
                     /note="ultra-conserved element locus uce-6373"
BASE COUNT          116 a           94 c           81 g          104 t
ORIGIN      
        1 aggaggaaga ggaggaggag gaagccagcc cgcctgcctg cccccatgct gagcctgagc
       61 agactttgtg agaaagcttc tctccatctg cagcccagcc cggtgggagt caattaattc
      121 tgaataacct aaaccgacag aggtatttgc attcacaacc tgactgatga ccgtataaaa
      181 ttgatttatg aattgaagta ctttccctcc ccttatcccc aattcaagcc ataattgatt
      241 atacgtgctg cagcgaaatt aaagaaagga aaaaagaaaa gaaaaaaggg aggctccaca
      301 gacgctgctc tatattctca aggtttcccg ggattagccg atctattctt tttttttatt
      361 taaaaagttg cttcctttac cctcttcacc agctt
//
LOCUS       KCLJ01000039             623 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 4536cal ultra-conserved element locus
            uce-5630, sequence.
ACCESSION   KCLJ01000039
VERSION     KCLJ01000039.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 623)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 623)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..623
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="4536cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>623
                     /note="ultra-conserved element locus uce-5630"
BASE COUNT          206 a          145 c           98 g          174 t
ORIGIN      
        1 cttaatctaa aataaattct tcacagataa agcctccaat ggcagcctta gctctaggat
       61 aagtgaaaca ttcttccctt caagtaacag tgtacctgac tgaagtgcaa gcagctttgc
      121 tcatctcctg tttgtttccc aaatgtggac aacaacaatt cagctgtagt gcaatttgct
      181 ataggttaag ttcctcagca atgtcctgca tgctttcagc aaatactaca actgaccatt
      241 tgcggctgca atcagttctt gaaaagtatt ttcaaagcag cgttttaaat cgctgtaagt
      301 taccacaagt acactcttct catctctgga aatgaggctt attttttctg gcacaccagc
      361 atctaactgt aacaagaatg caaaagataa aataaaagaa gtgtgaaaga aatgacaaaa
      421 catttcccca acaacaaaag caatcaattt cttggcaagt acattgttat ggcgcagttc
      481 aaatccgcta acaggacaca aagtgagaat ctgaatcgca ccacaacaac atccttgcca
      541 aaaaatcgag acattttggt cttaacctga tggacattcc ccactgtttc cttccccttc
      601 cacaaatcta gtaatcctat aat
//
LOCUS       KCLJ01000040             697 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 4644cal ultra-conserved element locus
            uce-4107, sequence.
ACCESSION   KCLJ01000040
VERSION     KCLJ01000040.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 697)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 697)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..697
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="4644cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>697
                     /note="ultra-conserved element locus uce-4107"
BASE COUNT          165 a          213 c          149 g          170 t
ORIGIN      
        1 aggttggcaa tgctgctccc tccattggca tcagtggagt tagaccaggg atgagtttgg
       61 cccagcgctt ccagaagaca gatgtatgac tctgttcctt gcaatgtgtt gcttaatatg
      121 atctgctgtt ctcttggggg ccaaaagaag tgggttatct tagaaaattc tatcatcacg
      181 tgatacaaaa aatggtattt acagaattgt tttcccccgt cttttgttat aattttttag
      241 gtgcttcaga gctgggccca ttttcagatc ccaggcagtt cacaagcatt tcatccctca
      301 ctgagagccg cttctccaac ccacgaatgc actatccagc cacctttacc tatacaccgc
      361 cagtcacctc aggcatgtca ctgggtatgt ccgcaaccac tcactaccac acctacctac
      421 caccacccta ccccggctct tcccaaaacc aaagtggacc tttccagacc agcagcactc
      481 catatctcta ctatggcact tcgtcaggat cataccagtt ccccatggtg ccgggagggg
      541 accgctcccc ttccaggatg ctcccgccgt gcaccaccac gtccaacggc agcacactgc
      601 taaaccctaa cttgcccacc cagagtgacg gggtggaggc ggatggcagc cacagcagct
      661 ccccaaccgt cttgaattct agtggcagga tggatga
//
LOCUS       KCLJ01000041             735 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 4755cal ultra-conserved element locus
            uce-4205, sequence.
ACCESSION   KCLJ01000041
VERSION     KCLJ01000041.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 735)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 735)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..735
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="4755cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>735
                     /note="ultra-conserved element locus uce-4205"
BASE COUNT          218 a          118 c          136 g          263 t
ORIGIN      
        1 ttctcttcag atcattgatt ccagtttgat tttgctcata catcaatttt ctctaattct
       61 aagtaaatat aaatcacatt ttttacatta tacccctcag aggacttttt tcatttcagt
      121 aagcattatt tgaatcatca ttacagtatt cataatgtgc tgcttatgtg acagtttttg
      181 aactttaata ttattttctg tagtgtgagg gcttagcaga ctataaaaga gacatattgt
      241 ttataatgtt tctgcaccac aacaaatgat gcacttctag cgtctatgaa atggcagtag
      301 ttttctaaat ttgtgattct tctgtgttca gcagtcaaga acagttgtac atctgctcag
      361 cacagacttt aggagaccat gaactttaat tgaggaaaaa taatgagggt tcagggacca
      421 ctgatacaga gtcggttggt aaggcaggtg ccctgctgcc agatcaatgg attatttact
      481 cctttgtcat aaacaagaaa cagttgggtc tttgtagaga ttacattcat attccaaagc
      541 caggctgcct ttttctgttt gtaaacatgc tgtatatgaa tatttttgaa aataatagct
      601 ttgctccttc attaaatgat gtaatgttaa ccttaataga attttaagga acaatagtgg
      661 gcatattaat taataatctg tactttgtgt gcacagaaag gattctgggg gtgttggggc
      721 atgtttacac atgca
//
LOCUS       KCLJ01000042             652 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 4962cal ultra-conserved element locus
            uce-1323, sequence.
ACCESSION   KCLJ01000042
VERSION     KCLJ01000042.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 652)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 652)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..652
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="4962cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>652
                     /note="ultra-conserved element locus uce-1323"
BASE COUNT          203 a          133 c          116 g          200 t
ORIGIN      
        1 caattaccaa tattttacag gtgtgttctt tcagggatac ggacatttgt ctctgttaca
       61 tctatatcta caaatacttt gcctaacctc cactgtttgt aattcaaatg ctacagactc
      121 aagaatgaca ataaaaatat gtacccatca aagcaatgac tttttcaaac tttttgttca
      181 gatcggctaa gacagatgcc actttgactt tcacttacaa tagcacgtca aaccagagaa
      241 acgatcagca tttggatctt cagaatgggg aggaaaaaac agctgagttg ttttttcctg
      301 ttttagcttt attgcacagt taaaagcaag gattactgag gtcattaagc aacattgtct
      361 ctgtgacatg attagtcagg tagcaaagtc catttgtcac ctgcaccagc aaattgagtt
      421 aatactgcac tacaggctat ggggactgta taatatcaac ttgattacat caaactggct
      481 gcaaacttga cacctcactg aatttgtcgg cattaatcgt taagcctgtc acaaatccat
      541 caggtttaca gataattagg ggcctgttaa tgaagctggc taaacaacct tacctttttt
      601 gataattaag aagccgcttc attacgaagg gaccatttcc tctgagcagt at
//
LOCUS       KCLJ01000043             411 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 5074cal ultra-conserved element locus
            uce-3988, sequence.
ACCESSION   KCLJ01000043
VERSION     KCLJ01000043.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 411)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 411)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..411
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="5074cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>411
                     /note="ultra-conserved element locus uce-3988"
BASE COUNT          116 a           88 c           71 g          136 t
ORIGIN      
        1 cctgcgttgc acagtcatta aggggtctgc tgcaaaagcc tgcttgactt tcttcccact
       61 aattacatca tcagatcatc acactgctaa aatcaggcgc agagtacttg cacacaacta
      121 aatccctgct tctaattact attttagtct ctttttcctc gtgacatgtt ggtgatagat
      181 cattattttt tcagcaattt gttcgcattt atatgcaata taattggatc tgattaatta
      241 ttatgattaa tgactgcaga atttccttgc aaagctatta atactgggag tatcaaatga
      301 aagacatgga caaattaaag ccaatggagt cctgttgctt gtacttacaa tgcctgggct
      361 caagtaaccc tttgctgctc cagccctgca ataaatacca gggtttatct g
//
LOCUS       KCLJ01000044             633 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 5179cal ultra-conserved element locus
            uce-1385, sequence.
ACCESSION   KCLJ01000044
VERSION     KCLJ01000044.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 633)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 633)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..633
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="5179cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>633
                     /note="ultra-conserved element locus uce-1385"
BASE COUNT          226 a          103 c          106 g          198 t
ORIGIN      
        1 acatttgttt gattttcttt taaactgtga gtgttagcaa attttacagt tacagcaaca
       61 gtttagtttt ttcaacaccc aagaaaatga aatagacaga agtgccatgc atatgatatg
      121 ccagcattga tttgtatacc atatcataat attagattat tggtttaaag tgaaagagtt
      181 tttctagagc atgagcttaa acatagcagt gataaatgat gatatgcatt gtctaacact
      241 tgcttttata taaatagctc cagaagattg cttaaatgat aatcgaaaat atgaaatagg
      301 gtggccttca tatcacaagg ccaagggtct acaaatggaa aaactgaaat aatgaaatat
      361 ttccaaggca acagactgtc aacaagaaca gtaatgcatg ggcatatcat agagctacca
      421 gagaggatat tagatcttat agctctagag ccaggagtta taatgacctt tattaaacag
      481 agccctccca cattacaaca atctttctga tttctgattt atggattagc agtcatacta
      541 ctcttcataa tttgaaacat tctcccacca tatttgattt gcactggaat catacattat
      601 ttagagctta catgagagta ttgatcaaca aaa
//
LOCUS       KCLJ01000045             707 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 5278cal ultra-conserved element locus
            uce-805, sequence.
ACCESSION   KCLJ01000045
VERSION     KCLJ01000045.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 707)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 707)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..707
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="5278cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>707
                     /note="ultra-conserved element locus uce-805"
BASE COUNT          197 a          155 c          127 g          228 t
ORIGIN      
        1 tattggtttt gtccataaga aattaagtac tttacttgtc cataaaaagg atgcaggcca
       61 aaaaacatgt taacaccact agtttgtaat ctatgcaatc acagtattac tatctaaatt
      121 tttgtttact tttcaacaga ttggtgtctg cagatcatgc tgtcttacac tgccgttcct
      181 ctgtaacctt aaccattatt cctactgtgt aaagtgaagc acaaatttaa ggtgacaaag
      241 caccagttgg ctgatgtgaa gtatgctatg aaagcagaaa cctctgaaag cttcacagcc
      301 attatgaaat aactgaccta tatgaaactg ctaccatggt tcacaaattt attgtcaggt
      361 tccagcctct agctgttctc tgattgttct aaatacttga caaactgaag ccttttcact
      421 ttccgttgaa attgcctcat ctccctgtca gagcgccatg ggggactcca ttacttttct
      481 gacttctttc ccctactgac aagtcattta gctggcttct tgttgtgaag gctgtccatg
      541 tcaaattagc cagggcccct attgtcctta ttaccactcg aaaagccatc atgagtaatg
      601 ctacggggtc cctcagttgt catcatttgt cagaaagaaa gggagtgtgg ttacatatag
      661 ctgacaggta atttcagtgt ctacaattac cccaattagt cttgtca
//
LOCUS       KCLJ01000046             593 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 5390cal ultra-conserved element locus
            uce-3484, sequence.
ACCESSION   KCLJ01000046
VERSION     KCLJ01000046.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 593)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 593)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..593
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="5390cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>593
                     /note="ultra-conserved element locus uce-3484"
BASE COUNT          187 a          122 c          119 g          165 t
ORIGIN      
        1 tttgcattta tcaagatgag aatcctgcat ttcttctgat gtgttctctc tgacagaaat
       61 cttgtgtgcc tgactaatct ctgcattgct gatgctattg aatgagcttt gtatgtgaaa
      121 gctccactaa tccttgtact tactgtttga atgtttgcta caggaagcga gcagctgcaa
      181 agcatctaat agagcgctac taccaccagt taaccgaggg ctgtggaaat gaagcctgca
      241 cgaatgaatt ttgtgcttcc tgtccaactt ttctccgtat ggataacaat gcagcagcca
      301 ttaaggccct cgagctttat aagattaatg caaaactctg tgatcctcat ccctccaaga
      361 aaggaacgag ctcagcttac ctagaaaaca attccaaagg tgcccataac aattcctgca
      421 ctgacagaaa aatgaacaag aaggaaatgc aaggcccgag agatgacttt aaaggtaaga
      481 tgttttcaga aaataaaaca acagaattca ttctggtggt gttctgctga ctttagtaaa
      541 atagagtatt cctgtggatt cagaaaaatg caaaggatga acacttccaa atc
//
LOCUS       KCLJ01000047             729 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 5498cal ultra-conserved element locus
            uce-3010, sequence.
ACCESSION   KCLJ01000047
VERSION     KCLJ01000047.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 729)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 729)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..729
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="5498cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>729
                     /note="ultra-conserved element locus uce-3010"
BASE COUNT          234 a          124 c          122 g          249 t
ORIGIN      
        1 actactgaat tcaatccttt cccttttcca tgctttattt ctgttgatga tttcttgtaa
       61 aagtacaatg atctcagtta tatgattgct ctacccttta gtctcaatgc attgtgtaaa
      121 atataatgca gtacagatgt caacctaaga actaaatagc ttatatttct taagaaccat
      181 gaaaaaatat taacactata gaaacaatag ttcagtaatt actttttgct gtgaagtgag
      241 gttaggcatt tatccttata gatccctaat acacttaaag tcagcactgc ccctgtggtc
      301 cttttacctt tgttgataaa tgtattgtac aggatacctt gtatgaccac tacagtattt
      361 gaggtcatgc taggctgtta gcacaaatgg tgtgaacaat agtttatatg ccacttaact
      421 ccttggaaga aacagttaac cttgccagag aggacagatc agtcatgtat agttattaaa
      481 gtctagaagg ttttgttatg ctctgaaata cttttacaga actacaatac tctggtacga
      541 gctttaccaa gtaggggagc aacgaagtca agaattatct ttgccacttt tgaaaaggat
      601 atattttacc agaactactt gtgaaacaca aattttgata tatttaatca ttagaatttt
      661 tgaacaccag gtagctatta agccactact aagtttacat taattgtgaa tttgatggcc
      721 ttgaaatgg
//
LOCUS       KCLJ01000048             595 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 5609cal ultra-conserved element locus
            uce-2566, sequence.
ACCESSION   KCLJ01000048
VERSION     KCLJ01000048.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 595)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 595)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..595
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="5609cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>595
                     /note="ultra-conserved element locus uce-2566"
BASE COUNT          157 a          126 c          128 g          184 t
ORIGIN      
        1 ttggctaaag ccatgccaag gccttcagtg agacaggtct ggccatgcaa ggttaacttt
       61 attgtgcctc atagggattc tgaaattgat gtgtttttag tctgtgcatg agtgtcaatg
      121 caaagttaag acgctcctca ttaacctgct ctctgcacct cagggactgc ttgggcatct
      181 tggtggatac ctgtgtgctt ctgaccctag tatttcccag cgaagagaag agctgctaat
      241 ttgtttcttg acaaatgtcc cattttcaca ggcagttgaa ctgaactacg cttgtgctcc
      301 attcaaacat gtcaataaac attattgcaa agatgtacaa gcaatgaaaa actcaccttt
      361 atttcttttt gccataaatt tacacaatgc tctaaatttt attcttccat agcaaagtct
      421 cgggatttta cctttactgt caccccagtt tcaaacaaag gtctttgttg ccttctgcga
      481 gagttctggg gatgggaaca ctgcagcaga gatacggata catgtctgaa gttgcagtca
      541 gactcagtta aaagctgaag aggtgaagtt gccattctct gggataagct gctgt
//
LOCUS       KCLJ01000049             376 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 5716cal ultra-conserved element locus
            uce-743, sequence.
ACCESSION   KCLJ01000049
VERSION     KCLJ01000049.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 376)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 376)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..376
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="5716cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>376
                     /note="ultra-conserved element locus uce-743"
BASE COUNT          111 a           75 c           69 g          121 t
ORIGIN      
        1 tcttagttca ctctgtgtgc aggtttatac tgcctaatat taaggatgta ttatttatac
       61 cgactgtagc cacgccacag aacacacgag gagagtttgt ttagcaacaa aaaatatttg
      121 ctacaggggc agtctggcaa tattgcttgt taagacatgc tatttgtaag caaatttata
      181 tgaaaagtat gcaatgtcta atactaaact actccagccc cagactgaag ggtgatttta
      241 caaacgtcct gcagcactca atcattcctt cattttaatg tctttatttt atgattttgt
      301 tgatgaaata ctacttaccc agtgctcaaa attcctttta ggctgcaggc actggctagt
      361 tgacacggca agccat
//
LOCUS       KCLJ01000050             524 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 5823cal ultra-conserved element locus
            uce-1616, sequence.
ACCESSION   KCLJ01000050
VERSION     KCLJ01000050.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 524)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 524)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..524
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="5823cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>524
                     /note="ultra-conserved element locus uce-1616"
BASE COUNT          168 a          110 c          101 g          145 t
ORIGIN      
        1 tgactttgaa ctaaacatca attaatgcac aaattaactc caataagcaa attcattggg
       61 gctttgagca attacttcat tttccagtgg tcacttctta attgtcacga caaacaagac
      121 atcacataat gtatgctcca aagctgggac ccttcagctg cagaccatgg ccaatggaag
      181 ctcatttgaa taatcaatat gacaacctta tttttctaat gcaaacagga ttgctacagt
      241 aaggtgtctc actgccacat cacagtcatg gcctctttta acccctaatt agatttaggc
      301 gattatccct gctcttcctt acaagtgtac agcccggata agggatgaca aaacctcagc
      361 ctctgcaggc tgcaggttat gcagggagat acagaagatc agcaaacaat tgttattcat
      421 gagatagtca cagtttgcca gaaaatagcc cagaggggtt acacagatgg aaattcaagg
      481 tgatgttggg gaattatgtt taattcaaat tggttatcac aaag
//
LOCUS       KCLJ01000051             722 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 5934cal ultra-conserved element locus
            uce-965, sequence.
ACCESSION   KCLJ01000051
VERSION     KCLJ01000051.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 722)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 722)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..722
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="5934cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>722
                     /note="ultra-conserved element locus uce-965"
BASE COUNT          255 a          115 c          120 g          232 t
ORIGIN      
        1 atagtgtgca tttcataaaa tgattaatac acactcatgc ttttgaatta acatatttaa
       61 gtgtacataa taaattggga attcttacaa atagataaga aggttttaac tgcattatgg
      121 acaaataaga atacaataag cttgaaacaa tacatttaag aagaagaaaa acaaagatgt
      181 aaggtcagac aatatctcaa ataacatttg gaaaatgctg ccaattgttt ggataactgt
      241 acaatgccaa agcctcttat aacattgtta agtctttatt cagtaataca ttatcatgca
      301 tatttcatag cagggattac taagacagaa ttgtgtgtca tttttgttgt atgtctttat
      361 aattacacct tgaagccaca actagatttt ttttttacta catattcatg aaaagcggac
      421 ttgtaatttg ataaagggta gcttgtgttc tcaactccat tcaaacagca tcatgaagca
      481 gaattaaagt aggcatctgt gttctcccgg cattaatctc ttcaagcaca ttccagctgc
      541 tatgatgtgc aagagggaga taagtcctaa acggactaaa gctaagcaag ccagacaact
      601 ctattattgg cttcataatt gcttaattaa acttttgtca ctaatcatta tgagggcaat
      661 agagctgtta tactggcttc tgttaagcaa aaatcaataa actgttggag ttaatttcgc
      721 cg
//
LOCUS       KCLJ01000052             563 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 6041cal ultra-conserved element locus
            uce-7854, sequence.
ACCESSION   KCLJ01000052
VERSION     KCLJ01000052.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 563)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 563)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..563
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="6041cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>563
                     /note="ultra-conserved element locus uce-7854"
BASE COUNT          119 a          118 c          177 g          149 t
ORIGIN      
        1 cttttaattt aagctctcct gaggctgcat gccagcacgg agctctgctt ggctagtggt
       61 acttggggca tgtgtgctgc agcactagct ggggtaaatt tgctatggaa gctccactat
      121 ttatgggtgg agaggacagg ggcatgcttg ctctaccacc ttcccccatg ttgtctcaga
      181 agtccttggt gcatctttga ttaggtgtag gtcagaagaa tttccacatc gtgaccttaa
      241 taactagggt tgattggcag gcagtctgcg gagagggagc agcctgtccc tttcatctcc
      301 cttggtgctg tgctgggaca atgggccagc atattttcct tgttgttcct catttgaaaa
      361 gggtctggta tctctactag gtacctgtga catgggggtc ttgattgggg tctcataaag
      421 ggccctgtca ctgtgtccaa aggccaggaa tacaaaggcg gtcagtgggt gggggtctca
      481 gctgaccact gaagaaggga ggggagggtc ctggaagcag tggagggaga agcaacccct
      541 gatgggagac tttaaagggg gga
//
LOCUS       KCLJ01000053             510 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 6152cal ultra-conserved element locus
            uce-7641, sequence.
ACCESSION   KCLJ01000053
VERSION     KCLJ01000053.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 510)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 510)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..510
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="6152cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>510
                     /note="ultra-conserved element locus uce-7641"
BASE COUNT          141 a           91 c          103 g          175 t
ORIGIN      
        1 agtttatgtt tcattagaag attttcctta accagaccct ttcagtgttc tctggaacac
       61 acttaactaa tgaaacttaa atgaaagtgg tgttcattta attttgatta tattctctat
      121 tttgtctaaa atacattttt aattgcacta tttctgggga gctaatgagg ggaaaaactt
      181 gtttctgaga aattgaatcg cagctgtagt tgcagataag gctgacattc ccttcttaga
      241 aagaagcaat caatgctgaa tgtatcaggt gagttcattt ctcttgctct gctttaatag
      301 cttataaaga agattgatta agttcttgtc tgatagatca ataaaggaat gaaagttagc
      361 tttccctcct tcaagcatgg gcttggcatc tgctggggaa tgtaggaact gaagaggagt
      421 gatgctgact tgggggtatt ccaccaatct ccttcctgtg ctattgctta cagccatggc
      481 atttaccatc cagctggact ccttttgcca
//
LOCUS       KCLJ01000054             616 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 6260cal ultra-conserved element locus
            uce-7783, sequence.
ACCESSION   KCLJ01000054
VERSION     KCLJ01000054.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 616)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 616)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..616
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="6260cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>616
                     /note="ultra-conserved element locus uce-7783"
BASE COUNT          197 a           95 c          126 g          198 t
ORIGIN      
        1 ctgaagcata acaaattgat ttgcttaaaa aattaagaaa aatgcatgtt gccttaacca
       61 tgatggactt tcgcctctct tgtagcccca cagaactggt gcctctttga tgtactctct
      121 tagttaagct gaatatatta ctttcactga gaatatatga ttgcattggt ggaatgcagt
      181 agtcaataat tgtgcatatg tgtgtttctt ttagtggagg cgatagtgga gtttgactac
      241 aaagctcaac acgatgatga gctgacaatc actgtaggtg acataatcac caatatcaag
      301 aaagatgatg gaggctggtg ggaaggacag ctcaaaggca gaagaggttt gttccctgac
      361 aactttgtaa gagtgagtac aaagtggaac tgttcttgtg ttgtgtgttt tatgtactgt
      421 gctgttcagg ctaatatctc ttatatccaa aaccataata tattgcatat acacatgtgc
      481 atacatatat attgcatata taaaatgcaa tgttctatca atgttacaaa gtttgcaaag
      541 acaagctgaa aataaaaatt tttctggtgt tcagtaaaaa tacttgactt tgtggtctga
      601 aaacgttatt ctagaa
//
LOCUS       KCLJ01000055             577 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 6370cal ultra-conserved element locus
            uce-7583, sequence.
ACCESSION   KCLJ01000055
VERSION     KCLJ01000055.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 577)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 577)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..577
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="6370cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>577
                     /note="ultra-conserved element locus uce-7583"
BASE COUNT          153 a          134 c           97 g          193 t
ORIGIN      
        1 ggcaaatcta ccacagtttc taagctctcc ccaccaccca gagcaaggtg aactgctgtg
       61 ttcccatcaa tttccaagat ctacttccca ggagcctagt tactataatc ttgtcccctg
      121 ggagcacttt taccctggta tgcatttgct cagcctctca ctatcacaca tacaattaag
      181 tttagcttct aaaatgtaat tggagccagc tgcaaccttt ctgacacatg ctaattgcca
      241 gtaatgattt aagtgccgtc aattcacatg ctgcaattgt tttaaataaa ggaatctctc
      301 gtaccttttc cctgagaaaa atctgttaat ctttgctgct gacttatcaa atcctcccgt
      361 cacctgtttg ccatcatttt catgagctga taacgtgttt attagagcca taatatgcag
      421 gtggaagcat aaaggtctca tttggtggag tatgaattct gtctcataca tttgtatgga
      481 aaagcttggt ttcacccttc agctgtgcct cggaagctcc gaaatagtat cttttattct
      541 tttcaaatga aatattagtt cttttaagtt catatct
//
LOCUS       KCLJ01000056             583 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 6479cal ultra-conserved element locus
            uce-7878, sequence.
ACCESSION   KCLJ01000056
VERSION     KCLJ01000056.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 583)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 583)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..583
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="6479cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>583
                     /note="ultra-conserved element locus uce-7878"
BASE COUNT          180 a           84 c          114 g          205 t
ORIGIN      
        1 gctccatgag tattccttgc ccattatgat gacctgcatg tagatttaag agtggataat
       61 tatattcatc tttggaagta aagtgctctg tgacagcatg agtaatagtt ttcactcgga
      121 agaggacgtt gcaggatcat tgtgatggaa aataatatgg tatatatagt aaaggtgatg
      181 gagtgtttgt cagagttatc agtcaaaaga ttgccttaaa gcaaagactt gctttaccat
      241 tgttgatgat ggaaggagaa ctagacttaa aagtttgcag atactcataa gtcatgagtt
      301 ccttaacaag attttccaga ccatttgaca tatttatact actgtctatt tttgccaatt
      361 gtgtggcctt agctgtttac atcccattcc cagaagatga ttctaattca actaatcata
      421 atttggtaag taatcttttg tttgctgtga tttgagattg cagcaaatat aggtaatttc
      481 agctatttgg aattgccagt attacatgtt atcagtaaaa ctttggaaag aaatgtgtat
      541 taatatgctt ccattgctca tattgattgc aaatatttac taa
//
LOCUS       KCLJ01000057             476 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 6581cal ultra-conserved element locus
            uce-849, sequence.
ACCESSION   KCLJ01000057
VERSION     KCLJ01000057.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 476)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 476)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..476
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="6581cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>476
                     /note="ultra-conserved element locus uce-849"
BASE COUNT          147 a           89 c          100 g          140 t
ORIGIN      
        1 aaaaattaga aaattcaaat gtctctcacg aacaccacca ccatgttctg tccagaagaa
       61 aaatccctca gccgcaatgg ttgtttttat taaattctcc tcaataaaaa gctcaggcag
      121 gatttattag gtactcaggg cggacgttta gtatttcgcc agttattaag tgaaaatcaa
      181 tagaaagcaa agaaaatgga agtcactgca ctgttagcac gctgttgtcg cccagatatt
      241 atgtcggctg tcttgtagat tcatgacaga cgaaagcggc cgggagagaa ctctttctgc
      301 ttacattgca ggagccaaag tggggttatt cattagatca ggcagctggc cagatggatt
      361 tccagttcag ttttaccatt tatcttaaaa acgcctgtat cgagtgagaa agaacactga
      421 tattatgtga tatcgatggc agctttatgt atctaaatca ggatttattg ttattt
//
LOCUS       KCLJ01000058             505 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 6692cal ultra-conserved element locus
            uce-3929, sequence.
ACCESSION   KCLJ01000058
VERSION     KCLJ01000058.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 505)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 505)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..505
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="6692cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>505
                     /note="ultra-conserved element locus uce-3929"
BASE COUNT          137 a          101 c          113 g          154 t
ORIGIN      
        1 cctctgccgt ggacccagct tttattgctt ggttttatta gcgccaaatc ccaggctcca
       61 cccagtttgt aggcgctgtg ctcattcttt ggaagcggga gaggttatca cctaccttaa
      121 tccctgcggc ggggtggatt aaggacacca atgtgcctca ggattctcaa agaggatcct
      181 ggaaacttct tgtttcttct tttttgctgt ctgtactaaa ctctattggg cctcaggaag
      241 gatttgcatc tgaaatgggc gacctggagc ttttctcaat gaagacatca gatcaaagtt
      301 cagttagtca aggcctttct aaaacattaa gggggcttgg aagtacacaa taaaaagatg
      361 agctctggca gagattgcag taaaaacatt ctgatctgta atccggataa agaatagatt
      421 ataggccaaa gaacagcccc tgtttaaatt gctttcagaa tccttgtttt gaataaagtt
      481 acattttaaa ttttgatgga atgtt
//
LOCUS       KCLJ01000059             688 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 6805cal ultra-conserved element locus
            uce-6242, sequence.
ACCESSION   KCLJ01000059
VERSION     KCLJ01000059.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 688)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 688)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..688
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="6805cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>688
                     /note="ultra-conserved element locus uce-6242"
BASE COUNT          174 a          173 c          210 g          131 t
ORIGIN      
        1 caacctcggt gatatgctgc tgtctgagac cctcatctcc atgcaggaac aagttagctt
       61 caggttcaca gagggggaga gtaattatag acctttggga ccagccacag tccacagatg
      121 ctgggctgcc cttgtgcggg ggccagagcg agtggctcgc catgactgct gtgtgaagca
      181 agggtttctg cttttcctta attctggcct ctctttatct ttgctgtttt cagttcaaga
      241 tggctttccc atgcccaggc gcttttctaa acccgaatac caacaattct ttttagggat
      301 gcacaaaaag tctctggagg cagcggctga ggcggggagg aagacagagg tggagcgcca
      361 ggccctgccc aagcttgaca aaggtgacaa ggaagaaagg ggtcctgatc ccaaaaccac
      421 catttcccag gaggaactga gagaaaacag cattgctgcc ctcagggcca aagctcagga
      481 gcacagcacc aaagtcctgg ggaccattgc cggggacagc ccagccccag gcaggaagcc
      541 ggagacaggg gaggaggcgg ccgtggcaga ggatgagaga cagacggaga agttgaactc
      601 atcgcagaag gaggagaagc tgatctaggg gcaatagacg tggcagaagc cagccccgac
      661 agacactgtg tcctctgggg gccatgtt
//
LOCUS       KCLJ01000060             716 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 6918cal ultra-conserved element locus
            uce-6363, sequence.
ACCESSION   KCLJ01000060
VERSION     KCLJ01000060.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 716)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 716)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..716
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="6918cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>716
                     /note="ultra-conserved element locus uce-6363"
BASE COUNT          189 a          152 c          146 g          229 t
ORIGIN      
        1 ggaaagtgtg cagggaattt ggtactcccc catgctgaga ggttaatgtg ctgaaataaa
       61 cagagtatga aaatacaact ttctaaacca gctgtcaaat tcagctatcc tgaattgttt
      121 tgggctggtc tttgcatttt gatgctaatt aagattaaat atctctcact actgaatttt
      181 gtagatcaag ttgaagtact tccctaatgt catgtaattt tctggcatta atacacttta
      241 tcattgtcat aagtataaat ggctcattaa aaccaggagg gaatacaata cttttatgga
      301 tttttgctct catgttaatg ctgttttctt tcctcatgag taatctcttg atggcttctg
      361 tctccacaga acagagacaa ctacatccgt tcctgcagat tgctccctga cggccgcacc
      421 ctgattgttg gcggggaagc cagcacgtta tccatttggg acctggcagc tccaactcct
      481 cgcatcaaag cagagctgac atcttctgct ccagcttgct atgccctagc tatcagccct
      541 gattccaagg tctgcttctc ttgctgtagt gatggcaaca ttgcagtgtg ggatctgcat
      601 aaccagactt tagtaaggta ggtcagccaa actggatcat caggttgtgg agaattatat
      661 tctattttct ctagatgctt ccagtattgt atagccatgg taataccttg agaaaa
//
LOCUS       KCLJ01000061             672 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 7025cal ultra-conserved element locus
            uce-978, sequence.
ACCESSION   KCLJ01000061
VERSION     KCLJ01000061.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 672)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 672)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..672
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="7025cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>672
                     /note="ultra-conserved element locus uce-978"
BASE COUNT          182 a          118 c          156 g          216 t
ORIGIN      
        1 tgccaagccc ctgttaaggc ttgtcagtct ttaataaatc tctgagattt aagatgctgg
       61 tgcccatcac tccccagtgc aaggtagggc agagccaggg ctgcagggac gtgtgagaaa
      121 agagctcctg gaaaggtcac tggtattttt ggagcaataa atcatgggaa agatttgcat
      181 ttcggctgta taaaatccag ggctggattt ttgcagtaat atttctctcc tgacttgttt
      241 tattagcttc ctttaaacat gttacattat tgcttataga atttcattta cttggattgg
      301 cagcttgata aatatgtcta ttggcgatga tttggattgc tctgggcatt aatattatta
      361 aaacctgtca caaggaaatg tctgaaagat gacttactgt aaagattaca gcatgaaata
      421 aatcatacaa tggtatttgt taccgtttat ggcctcttgg agccgagtca atcccttttt
      481 atgttgcatt atttttcaag tttttatagc cttacattat atatcgctgt cagaaatgaa
      541 cagatggggt gtcaaacacg agccttctga ataattccca ccctcgggtt atttgtatga
      601 aggacaagtg taaagctgtg ttctgcagga aggcagcggg atggaggtgc agcaagtgtt
      661 gttccagcgg gc
//
LOCUS       KCLJ01000062             826 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 7135cal ultra-conserved element locus
            uce-4679, sequence.
ACCESSION   KCLJ01000062
VERSION     KCLJ01000062.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 826)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 826)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..826
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="7135cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>826
                     /note="ultra-conserved element locus uce-4679"
BASE COUNT          255 a          171 c          140 g          260 t
ORIGIN      
        1 catttaaaag gagccacaaa tatttatgag gcaattttaa cacttaccaa ttacttttgt
       61 ggggtttggt actttaatag ctgtagttgt atcagccttg gctgatattt cctaattatt
      121 catatcctga catgttatca gccatcatag agcattacca gcatcatttt aagctctctt
      181 caccttcttc agtctgggtt ttatttgaaa agcagacatg cagtccccag tgagaattaa
      241 agtagaagca ttagcttgca aaatatatgc caatgaccta atgattctga catttccaca
      301 atacaagctt tacaagaagg catgcagaca gcaaagtctg tttttctatc tcatattttt
      361 ttaatggcta aatgtttgga ggaaacaaaa tggatttatt ctgctcaatc cagggtataa
      421 tatcaggact tatccggttc cgggccccag ggcttcagac aactaacaaa acacatctta
      481 cttctgctct gctagttctc tgttatgctt ttcacatgca ggaagaaaga gtaaaagcat
      541 aacccaattg aataaagcag catggcctgc tattctttgc ttatgaagca tcacatgata
      601 gacaccaaat taagaagaac cccccacctg tggttaagta tgtatgcaac tgtcaagctg
      661 ttgtatctaa tagggaattt catcatcccc ttcactgcca gagtacaaga atatgttaaa
      721 atgttaatgc caagcaagct tcaataatcc agtgatttta cataatttaa atccccgatc
      781 tattttgaaa tgctcctacc tttcaaagcc tttgctctgt ggcaag
//
LOCUS       KCLJ01000063             602 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 7247cal ultra-conserved element locus
            uce-6842, sequence.
ACCESSION   KCLJ01000063
VERSION     KCLJ01000063.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 602)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 602)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..602
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="7247cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>602
                     /note="ultra-conserved element locus uce-6842"
BASE COUNT          172 a          107 c          110 g          213 t
ORIGIN      
        1 tcagaaagac tgttatttca ggcaaagaat gtaatctatt tcccaccatg tattaatata
       61 catttaggtc tatctgtcct gctagctatg gctatatcta accacaataa aacagttgag
      121 cactctcaag tgttatgcct ttaagttaaa ctttattgaa ataaaataag gaaagaacaa
      181 tacattttgc attcttcaga agccagtgtt caataaatac taagttttga tcgattgata
      241 cagtgtcata tttgactaaa gaggtgggaa agttgctact gttgctttgt gctggctaga
      301 agaagaatgc actattgatt ttatatgttg gatgggctgt cagcgtacag tgcattgttg
      361 attttgactt ttatagccaa catgtttcct ttaattggat catttgtaaa agagaggagg
      421 gtacctgttc ccttctgaca gtgactgatt acaatcattt catgtttgtc aatatttgat
      481 aaacccacgg ttacccaaca acatggctga aagcagcatc tttatgcatt tgcttgtttc
      541 ccttctttcc tgtttctgat ttcagtctcc gtgaagttgt gccagcaact tcttcttcat
      601 at
//
LOCUS       KCLJ01000064             654 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 7356cal ultra-conserved element locus
            uce-4963, sequence.
ACCESSION   KCLJ01000064
VERSION     KCLJ01000064.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 654)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 654)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..654
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="7356cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>654
                     /note="ultra-conserved element locus uce-4963"
BASE COUNT          217 a          110 c          128 g          199 t
ORIGIN      
        1 tagtacggga tgctgtgaac gtatattatg tactgcttct tccttaagga ggatacttag
       61 gtgaagggga agtttttcag atctaaccct tgttatttta cctcttctca ccaggtaatt
      121 tccagttatt cacaagtttc cctttagcct taataaggaa atcttcaagt caggttagtg
      181 cagaagatta agactgtatt aagatgaagt ctgaaatgtt ctgctaccaa ttagcagtct
      241 agtatttctg taagccttga atttttgatg cgatcaatga caccaagtgg agccatcttc
      301 tgtggagtgg ttattaaaga tataaaaatc aatacaaaga tgatacttgg aaatccatat
      361 cacaagataa tgaatcgcca tgagagccag ctaaggagga atgtcagcaa accaaacaga
      421 aggtttgtgc ataacaaatt atttgatgcc agtagagttt aagctaaatt ttgcatgaga
      481 cagaagtctt caggcaacac ttatgataca tttgcatggc aaggttttaa tgagatgaag
      541 acacaagacc aaccatgcat ggggcttttt gtgcattaag ggattaagac aataatgcta
      601 taatttgact ttaatgacaa aacagcatca aaaactttct ctaatcctta tcca
//
LOCUS       KCLJ01000065             502 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 7469cal ultra-conserved element locus
            uce-2651, sequence.
ACCESSION   KCLJ01000065
VERSION     KCLJ01000065.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 502)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 502)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..502
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="7469cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>502
                     /note="ultra-conserved element locus uce-2651"
BASE COUNT          141 a          125 c          121 g          115 t
ORIGIN      
        1 gtcataaaac atcgatctag ctgaaaaatg aaccaaccca caaaagtcac taaaaagaaa
       61 tgtctatcaa aactgtctga gagttacggt tagtttgctt ttttgccatg gtaacatatt
      121 atgcttcaag taccagttca aagatgtcgt gttcggtcag atgaagttgt tacatcattc
      181 accacatacg acaacaaaaa tgtttgcccc tagcacattt cacagcttca cctgctacag
      241 actgtcactg aaaaaaatgc gctcagtctg aaccatgtca agtaaactac agaagtagca
      301 tacaaaccgt gctagctcta accccaaaac caggtacaac ccccggcccc gcggcggtgg
      361 gacaggtggg aggtgtggtt gtacagtaca ttctaaggcg ggctccggca gcaggcccgt
      421 gcggcagggc tcagtaccgg tgcgtctggt gcgagtactg cggcggctgc tgggaggtag
      481 ctgagtaccc catgctgctc tg
//
LOCUS       KCLJ01000066             532 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 7579cal ultra-conserved element locus
            uce-185, sequence.
ACCESSION   KCLJ01000066
VERSION     KCLJ01000066.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 532)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 532)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..532
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="7579cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>532
                     /note="ultra-conserved element locus uce-185"
BASE COUNT          178 a           74 c          129 g          151 t
ORIGIN      
        1 cttaactcct tggcactacg tttttgaagc tctctctgac tgtggatgtc tggctggaaa
       61 atccagttcc tgaaatgaaa ggattaagta tataaaggga gagaaaagga gggggtgtag
      121 aagggctaga gatgagcaaa gagaggctta aatagaacag tatacagtaa gtagtatagc
      181 cagcaaaatt gaagtcattt actggaacgc ttttaatttg gtttaaacaa aatactcttt
      241 tgtatattca aaagtagctc agctgttgtg aagccagaaa attaatggta tttttagtga
      301 aataacaaac gcatgtcaac aacatagctg tggatgataa tgttggcatt ttattcatga
      361 ggaattatca atgcaggtta ctggacaaca tagtgtgact ggaatgattg agcacagggg
      421 ggaagcggct gtccttctgt aagacgattt cattttacat ttagtcattc aggaagagaa
      481 gaaggagaca gaaagaaaaa catgcctata ccgattcttg tggtttctga gt
//
LOCUS       KCLJ01000067             499 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 7689cal ultra-conserved element locus
            uce-3349, sequence.
ACCESSION   KCLJ01000067
VERSION     KCLJ01000067.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 499)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 499)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..499
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="7689cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>499
                     /note="ultra-conserved element locus uce-3349"
BASE COUNT          171 a           66 c          133 g          129 t
ORIGIN      
        1 gccttgggaa acaaaaggtt ttaatggctg gtgcttggta tccttgacaa caatccccaa
       61 agaatattac attagggcac cagagaactt ttaaaaataa gtaatggaat tccgtctctg
      121 ttatgctttt agtagtcatt tcggccatgg tgcagcgagg tcataagctg agctcagtga
      181 agggagccag aacacgaaat gatgctggtc tgggagatga gaggtacaga attacaagcg
      241 aaagtgcagg cctgctgagg caattacagc ttaatggggt catttggaag gcaattgcca
      301 ggggttaatg tagtatggag agatgaggtg agattgaagt gaaatttggg gctggaaatg
      361 tgttaagatg aaagatcaga gtgcagcaga ttctgcagtg cagaaggttt atatcatgca
      421 aaaaatttga gaaaaatgta aaagtagtag ccagatgttt caaaataaat aaataaatta
      481 agtaaatgct ttaaaaagt
//
LOCUS       KCLJ01000068             684 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 7796cal ultra-conserved element locus
            uce-6448, sequence.
ACCESSION   KCLJ01000068
VERSION     KCLJ01000068.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 684)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 684)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..684
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="7796cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>684
                     /note="ultra-conserved element locus uce-6448"
BASE COUNT          198 a          103 c          152 g          231 t
ORIGIN      
        1 tattattgca cattaggagt gtggaaataa tagaattctt gtcatgctta tactgtgtgg
       61 caacgctcac ttataaacat caatttgtag ggatagtacc tggacatgtt tggctgaaaa
      121 ttgtgggaga aggggtgctg gagtgcttga tgtggtgtat ttggtgacgg tttaatgatg
      181 atttggtgct gcttgtgcct aatccctccc ccacccatga caaacctttt cccagttggg
      241 gctggaggaa atgagtaatg cttaacccat ttgtgtgatc aattcactta agcagctact
      301 gtgaaatgtt aatcacaact ttaatttgta ctgcattagc attttgatta acttgtaggc
      361 ttgctagcac acttgaagca cttttactca tagttacagc tcggaaatga ctttttgatt
      421 aattaagttt gttagacagc agctgagctt cctgaatgct aaccttaagg ggctaaaagt
      481 tcaaaagtta ctgggaataa ctgttgctgc tgaaaaggat tcttgtgaac aaaatattat
      541 gtacctcttt gaaactgtct ctaaactgta aagagaacag atttattatg agaaaggttt
      601 ttggtagatt tgtgtaatat ttgaaacaag tgctggcatt aagacattgt ttatgttagg
      661 aaactgggat ttattgcaaa atta
//
LOCUS       KCLJ01000069             536 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 7905cal ultra-conserved element locus
            uce-4786, sequence.
ACCESSION   KCLJ01000069
VERSION     KCLJ01000069.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 536)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 536)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..536
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="7905cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>536
                     /note="ultra-conserved element locus uce-4786"
BASE COUNT          131 a          128 c          127 g          150 t
ORIGIN      
        1 atttaatggc gaggaatcca gccacggttt caggctctgt tttccacagg cttttcccat
       61 gctgtattgc tgtgtgatgt gaccactaga gagcaggctt aacctagtaa cgagagctaa
      121 ttagttcttc atttgcagcc cccaaccccc ttcctccttt ccgtcgaggc agaagcgact
      181 tccatggttc tcagctttgc ctcctgtgca atcttagggc taattaaaac gccacagacg
      241 gcctgaaccc cacattaaaa tttgatgagg aattgatcag ccaagcaaac aggaaattta
      301 gctgtgtgag tgaaggtaat gtttgctcaa atgtgtaatg aggtccatgg ggaatattta
      361 tggggacctt agcgatggtt tcagcagttc cttctccttg aagtcctctg acctacctgc
      421 cctctccttc agagcagtgt aggcacaagg aaaccccaag cttcatcagc gagcatgttt
      481 gggaaagttt ggctaaggta aagctttggc tgtggaacag catttgcagt tttgcc
//
LOCUS       KCLJ01000070             457 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 8013cal ultra-conserved element locus
            uce-7531, sequence.
ACCESSION   KCLJ01000070
VERSION     KCLJ01000070.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 457)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 457)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..457
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="8013cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>457
                     /note="ultra-conserved element locus uce-7531"
BASE COUNT          127 a           89 c           93 g          148 t
ORIGIN      
        1 aaatgtgctt tgaaaaaaca agaaaatgtg cccatgaaaa acacgggcat tcaaagctga
       61 atattgagca tacagttgta aactcacatg gcacatggct gggtaggttt ttttggcaga
      121 gccagagtct caacctgcag tgatgctaaa gatattagca aattagcact gcagagcttg
      181 ccagcgtatt cgctagagtc ctgctcatgc tctcactgct gtaattaaaa ctaattattt
      241 tctaaaacat agtaatacat gaatatgtgc aataatcatt ttgtagtggg caatctgtga
      301 agtattttta aagcttcttt tccccctcct atctttggct cgctgtgcag tgtgcctgct
      361 gcctggtgca agccagcact gtcattttgt gagagcaaca ctactctggt aactttactg
      421 attcttacat gtgggatatg tatttttatt gtctttt
//
LOCUS       KCLJ01000071             605 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 8117cal ultra-conserved element locus
            uce-6791, sequence.
ACCESSION   KCLJ01000071
VERSION     KCLJ01000071.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 605)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 605)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..605
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="8117cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>605
                     /note="ultra-conserved element locus uce-6791"
BASE COUNT          173 a          130 c          134 g          168 t
ORIGIN      
        1 tatatacaca aacacacata tgtatgccac acacgttggt atttttcctt tttttggtgg
       61 aagccagtgg aatgatgaca atctggatca ccgtgtttcg cttccaaagc gaagctctca
      121 gttaacacac cggcctggta cgccagcaga tgccgtctaa gcctttaaat cgcacactaa
      181 ttgcactaat tgagctaaca gtctctgttt cgtctcccta ccctgagtca accagcatct
      241 tctggtactg ctgtagagat ccaagctgtt gactgtagtg ttattttgtc agccattaaa
      301 cgattcatca gagtcattaa ttgatttatt accgctgcct gcgagtatag ctttgcaaat
      361 aaagaaggat ggaggtcagg aggcaatgga aatcggacaa aacagcacag ccaggagctg
      421 ggcacttgaa ttatcgatag gagcccactt gtgcaactgg catcaggtta taaaaaagga
      481 gaagatgtgc tgtctggctg tgctacatag ctggttaatc tatgcaggat gtaaaaccat
      541 cttgttttct taacttaatc ttccaggaga aaccaggtta gtattaactg agctgaagag
      601 cagca
//
LOCUS       KCLJ01000072             626 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 8226cal ultra-conserved element locus
            uce-3630, sequence.
ACCESSION   KCLJ01000072
VERSION     KCLJ01000072.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 626)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 626)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..626
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="8226cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>626
                     /note="ultra-conserved element locus uce-3630"
BASE COUNT          189 a          122 c          138 g          177 t
ORIGIN      
        1 tcagtgttgc tggaggtaaa tagaaggaat attctgggag acttttttgc tagactggtc
       61 tcctcagctt ctcacctcag ctccagacag atgctgcaca tctggttcta gcagagaagg
      121 gacacgctgc actagctcgc tgctgagtgg aggcctgtgt ctgcactgcc atgtctgttc
      181 tgtgtgctcg ctgttgaact agatatcatg gaaagacttt tcttcccatg ttctttaact
      241 gtagtcgcat gtggccaagc taaacccctg cagtgcaact gttttttcct atttacacat
      301 gttactaaga aacatcagct aaggatatgt tattacaagt ttgtgaatga ccccattctt
      361 ggcacagggc caagccaaac attttagttc atttaaaaaa gcaaaatgtg atagagtcat
      421 tatgattgac aagcagaggt ggagtgctac tatgaaacag agagacggga aattccaata
      481 atccaaatta ataagcacag tcattaattc catcagtggg attataaaac agaaatttca
      541 ttctttgtta agagaagttt ggccagaaaa ggacacagga gacaaactgt aaggcacttt
      601 gacatgataa gatgttaaca ctgaga
//
LOCUS       KCLJ01000073             764 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 8335cal ultra-conserved element locus
            uce-6007, sequence.
ACCESSION   KCLJ01000073
VERSION     KCLJ01000073.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 764)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 764)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..764
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="8335cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>764
                     /note="ultra-conserved element locus uce-6007"
BASE COUNT          244 a          132 c          145 g          243 t
ORIGIN      
        1 atgatcagag aagcagacat tgatggggat gggcaagtca actatgaagg tttgactcaa
       61 aaccattatt caggaaagcc tgttgcatag gacattaatt ttcttgagac actagttatt
      121 tgcttgtcca cttcatgcca actgtgtacg ctggagacag taaatcacag tgacttttta
      181 tcttttcaga attcgtacag atgatgactg caaagtgaag agacctcctt tacacctttt
      241 ttcctctaga agaatcaaat tgaatctttt acttacctct tgcaatgttc atttattcat
      301 tctgtttctg tatagcaaaa ctgaatgtca aattaccttc tgtccacaaa ctgcatgtaa
      361 tggttggtgg tcctgtccct aaaagataaa gttaaacatc agttttaaaa tataaataat
      421 tgtactacct tgaaaataaa aaaaaaggaa gcacttagtg aactcaaaag ttccatttgc
      481 taatgactat tacactgttt gggctggcca gtttttcatg catgcagctt gacaattgag
      541 cacagtcaga catgtgtatt aaaaggaacc taaaggatcc actctattgt tcaatagtgg
      601 attctagttc aatttgtagt ataaattgtc atagctggtt tactttaaaa ttggtttata
      661 cctcaggatg gtatgcagca aaatggttga aggatgcaaa acaaaatgcc ctgaaggttg
      721 aatggttctc ctgtacgtag cagtgtgctc caaaaatagg atga
//
LOCUS       KCLJ01000074             415 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 8440cal ultra-conserved element locus
            uce-2491, sequence.
ACCESSION   KCLJ01000074
VERSION     KCLJ01000074.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 415)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 415)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..415
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="8440cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>415
                     /note="ultra-conserved element locus uce-2491"
BASE COUNT           95 a          114 c          113 g           93 t
ORIGIN      
        1 atgcccagca gagctgctgg tggggctgga ccccctcagc accatttaaa tgtccaattg
       61 cactcattca agccccgctg ctcctccagc ccgtgacagc tttgacagcc agactcctta
      121 attccttttt cttattccct taatctgtca tctttatcag gctggggaag tgccaggctg
      181 caagcaggag ccccggcccc gatcaatctc cacattacag ctgacagaat ggtgctaata
      241 acttattgat ctcatgtttg ccaagccccg gtggggctgg aaggctccca ttgattggct
      301 tgagggaagg aggctctcag ctgagagcag agcggaaaac cttcaaattg tctccttccc
      361 caggagctgg ggagggaggg agggcaggga cctgcacagt gcagaggaag aagga
//
LOCUS       KCLJ01000075             712 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 8539cal ultra-conserved element locus
            uce-760, sequence.
ACCESSION   KCLJ01000075
VERSION     KCLJ01000075.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 712)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 712)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..712
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="8539cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>712
                     /note="ultra-conserved element locus uce-760"
BASE COUNT          236 a          107 c          105 g          264 t
ORIGIN      
        1 aaatatcaaa accttaatat gtataattaa attaatcatc ataaattact tttagcacag
       61 agagttagat ttataatatc attttcaaat ctctatgtga ggtttaaata ttttatagca
      121 tatgtgagtt agagggaaat gtgtctaatg gcttaaatat cactgtacag cagtagactt
      181 tgacaaaaac tgtagcacaa ctgtttctaa ggtagtttgt aaaaattatt tatttccata
      241 ccagttaatt atgatgggag tctttgttga atgcacaagc attaaaaaag tgctgatatt
      301 ttatgcatct ttaactgtaa cgtgcttccc tgcagcgcat tggtaactcc ttgacattta
      361 acattcactc acagcaacta taataagggg tttgattgct tcttttgcag atgcagtaat
      421 ttaataactg tgatcagttg cataaattta ctatacaacc atcttaagtt agccacatta
      481 aaattaagca aaattgtaat ctgttgacag attattgctc ctgaacaatt ctactaaaag
      541 catttcagat tagcttgtgc cacaagcatt tttgttttat aagcttgtaa aaaatactgc
      601 tgcttttttg cttccaatct tactattaga caattacatg aaattttatg ttttctgtta
      661 aatcacctga actgggatga tttagttatt tataccacat tatgttttga at
//
LOCUS       KCLJ01000076             574 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 8648cal ultra-conserved element locus
            uce-6947, sequence.
ACCESSION   KCLJ01000076
VERSION     KCLJ01000076.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 574)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 574)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..574
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="8648cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>574
                     /note="ultra-conserved element locus uce-6947"
BASE COUNT          226 a           80 c          113 g          155 t
ORIGIN      
        1 ctgtataaac aagtataaat gtttaaaaag taaagaatac taatcaagag atggaagaca
       61 cgcgcagctt aataaatctt gccttcaatt tatttgtcta gtattacaaa ggcagaggag
      121 atatcaatta atataggcaa agaggaccca taatttataa ttaactggca agtgggttgt
      181 aacaaacagc agcactgaat ctaatagcca gtagaaaaat aactggtgtt gatttgtccc
      241 tcggcaaatt aatagagtgc ttatcaatga cagggttaca taaaactgct aaataaataa
      301 tcatcagtga gttagagtga agcagatctt taacaagctt aatctgaacc tcttgacatc
      361 tgcagactat gaagagatta aatgctaaga aagagaagat gcactatgca catcataagc
      421 atgctcagga gctgggcgac atcgtgttct tgggtaatgg gaaacaagga aacattttta
      481 ttgcaaaatt atagtgaaaa atggttttca ttataattag actgaaaatt ataaaaggaa
      541 tatcaaagaa aggctgaatt ggaattaacc agat
//
LOCUS       KCLJ01000077             441 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 8862cal ultra-conserved element locus
            uce-6641, sequence.
ACCESSION   KCLJ01000077
VERSION     KCLJ01000077.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 441)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 441)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..441
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="8862cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>441
                     /note="ultra-conserved element locus uce-6641"
BASE COUNT          108 a          111 c           97 g          125 t
ORIGIN      
        1 tgcttatttc attgtctcct tattatgatt tgaaactcgt tttgctccct gcctgtgccc
       61 ctgccaggca gcaacagtcc ctgcatacaa aggcaggttc cagggaaggg gggaaagccc
      121 agcccgggaa gctgcggcac agccccagac ctgtggaaag ctccatttac ccaagaatcc
      181 caaagctttt cgtttaggag aatatttaat actcttatta atcattttta atccgtttgc
      241 ttttaattaa gaaacagcat gatgcttccc tatcaacata tgccagggag cagattaatt
      301 gtggcttaag ataactctcc ttgattggtg taatgtatta gctaacgagc tgcctgcttt
      361 tggagagctc aggctctacc ttggaaaggc tgctgccctc cccccccttc cctggggtgt
      421 tggggacttc aaaaacagaa c
//
LOCUS       KCLJ01000078             507 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 8968cal ultra-conserved element locus
            uce-6532, sequence.
ACCESSION   KCLJ01000078
VERSION     KCLJ01000078.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 507)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 507)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..507
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="8968cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>507
                     /note="ultra-conserved element locus uce-6532"
BASE COUNT          162 a           79 c          100 g          166 t
ORIGIN      
        1 aattctataa atttcattat ggaaaattta taagatgatt tccatgacaa ccatataata
       61 agattcatgt ttactttaac tctgagttct caatgtcttt ttaatgactc ccatgtaatt
      121 aaaacagaat gcataatttg aggtaacata gtataaatca gttttgtttg cgtgatgctg
      181 aatactgtta atacatgtac aatgaactgt ttaagagcct tacatggata tgtccatttg
      241 ttgcagaact gtgagaaact ggaaaataat tttgatgaca tcaagcacac gactcttagt
      301 gagcgaggag cacttcgaga agcaatgagg taagtctggg tcaccatagc aacagtcaca
      361 gatgtggtaa agaaagagtc attcttcatt attgggggaa caaatgagtt cattgccacc
      421 attcagctct attctctaag gtattaattt gtcagtggag aggcttccct tgaggctgta
      481 ctttggtttt gaagctgcat aaatgtt
//
LOCUS       KCLJ01000079             602 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 9079cal ultra-conserved element locus
            uce-7117, sequence.
ACCESSION   KCLJ01000079
VERSION     KCLJ01000079.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 602)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 602)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..602
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="9079cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>602
                     /note="ultra-conserved element locus uce-7117"
BASE COUNT          170 a          139 c          104 g          189 t
ORIGIN      
        1 catttcatcc tcctttaggt ttaattaaga attcctcagt tacaactctc tagttgtcaa
       61 ggtctgagag actcttggaa aacttgtgtt tcagtcttgc tggcccaagc ataataaaaa
      121 aaaataccca gcctgaatcg aatttttatg ctcagttcac ggtagatttc actccattct
      181 catgtaaaca gcttctacga atcaacatat gtgtctgggt ggtatctctc actttgtttt
      241 gtaacaaaaa gccatattgc atcatttaat ttgctcaagt catgcaaata ggaaaaaatc
      301 aataggacaa aaaggggtcg acttatcctc ctccccacta aactgctgcc cacacacaga
      361 gtcctgttgc ttatggcaaa agaataacaa caacaccatt gtgtttgtta gttggttcac
      421 taatgggtga aactggagaa catcattctc cttcagtccc cagctctgtc caaatgttca
      481 tgccttttga gggagcattt gtcctacccc ctctattccc agatgattga gaactgtctt
      541 actgcaggtt ttcagctgca gatctctctt tattcatacc atatgcagca gcagtttgag
      601 at
//
LOCUS       KCLJ01000080             524 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 9186cal ultra-conserved element locus
            uce-2788, sequence.
ACCESSION   KCLJ01000080
VERSION     KCLJ01000080.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 524)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 524)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..524
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="9186cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>524
                     /note="ultra-conserved element locus uce-2788"
BASE COUNT          187 a           81 c          106 g          150 t
ORIGIN      
        1 ttaattggat tgcatgcata aattgcaata caaggtggac atgtgatagt tttctttttc
       61 accaatcagt catgtcaaga gaaccttatg tattttatat agaaagtaga aaaaatgata
      121 atttgaaaag atgagaagat ggtgcagggt aaaagctgat attcttcctt tataacagat
      181 agccccaagt tgtagaggcc attatttctt gcattttcag agcaaatgaa cttgacagat
      241 ggctgtgtca cctaaacccc tacctaccaa cttgattatg cagaaaacaa tacaatagaa
      301 aagaaatcat tactgaagga acctggttag tccacagagg gctgagcggt gcagaagaac
      361 aaaattacag ttgtggaatt gaacagcaag aatacattta acataaagtg ggttacagca
      421 aggcaatcag tcatagctaa agctattgtc taggcttgct tgcatggtat atgaagtaat
      481 ctgtcatcta ccagtgaatt tatgcttagt ttatagtaga aaaa
//
LOCUS       KCLJ01000081             689 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 9293cal ultra-conserved element locus
            uce-6101, sequence.
ACCESSION   KCLJ01000081
VERSION     KCLJ01000081.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 689)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 689)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..689
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="9293cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>689
                     /note="ultra-conserved element locus uce-6101"
BASE COUNT          225 a          140 c          126 g          198 t
ORIGIN      
        1 aaaggaagat agtgtcagtt tgtatccctg cttcttcaaa attcatagct cttaaacacc
       61 atgcagcttc tcttcaggag acctgaacct actcctttgc agcaagtgta tcattaataa
      121 gagcaagtta gaagtgcttt gcatttcatc tttctgaaga ttcatccact ggtgcatata
      181 taactgacag ttaaaattag acatatatta aaatcagtta ctgaagaagt cctctgtctt
      241 ccactgtgcc caaagcttgt aatggtctga aaccagccag aatatacagt aattgtcatt
      301 cagcaagagt ctatcctaga aagtcatgct tcagtggaga agactgagtt tccatttgaa
      361 atcaacaaat taatccaaga caggtatctg aaagggcaag tttaatagga agcagctact
      421 gggctctcaa ccatgataaa atgttattgc tgtttttggc tgggaacata cgatactctc
      481 tgcataagag ctccattgct gttcaggaga tatactgctc aagctatcaa aatgatgaca
      541 gtctgccagt ccccgtaaca acttgccatt ggacatggca agagcttgtg catgtgtgtg
      601 tgaatttaca attaccaaaa ctcccttata agcagaaaag aagctcatgt attaactgta
      661 cttataatag aacaaaaacc ctcaaatca
//
LOCUS       KCLJ01000082             585 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 9406cal ultra-conserved element locus
            uce-2023, sequence.
ACCESSION   KCLJ01000082
VERSION     KCLJ01000082.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 585)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 585)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..585
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="9406cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>585
                     /note="ultra-conserved element locus uce-2023"
BASE COUNT          190 a          111 c           84 g          200 t
ORIGIN      
        1 aaaattcagc atacggtaaa caatactttt tttgttagaa taatgactta tttattcttt
       61 tatattgtgt agcacttggg gaccacatcc atttaccaaa ataataccaa attagtactg
      121 caaatattga aatcagacct ttcagactaa ccagtggcct aattttctct tcaatctgct
      181 cttaatctca attcatcaat aacactgcct tattatagga ctttgacagt gagctagagc
      241 ttttgataaa ttatacatct caagccagat ttaaaatttg aagctcaagt gctaattatc
      301 tgtacaggcc tagttaataa cgagatttct tgttaagtat ctgatcacag catgggcatc
      361 atttgtcaag aacctcaagt ctaccttgga gactagctct tcgaattctc ccttgcctac
      421 catatgtaaa attgggatct ttgtttctat aataaccttt tattaggaag ctgacataat
      481 gattaagttc gctgtagaca catacaatga gttagacaat tacccttgct gctttaaact
      541 actcaggctc ctagcaagac aaaataatta atattgaatt ttaat
//
LOCUS       KCLJ01000083             795 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 9515cal ultra-conserved element locus
            uce-7362, sequence.
ACCESSION   KCLJ01000083
VERSION     KCLJ01000083.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 795)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 795)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..795
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="9515cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>795
                     /note="ultra-conserved element locus uce-7362"
BASE COUNT          248 a          160 c          169 g          218 t
ORIGIN      
        1 aggctttctg gagagggatt tgagcagctg ctgcttagca gagaatgaaa ttcagggggg
       61 aggaggaagg gggcaacaaa caacatttgt ttaaaatctg gcaggagcat cctaattaga
      121 tgaattattg aatggatcat caggattgct ccccaaagtg ccatagggca ggagagccct
      181 tagaggacat gttgatttaa gactgcagaa atgatcccaa agagcaaatg tggaacacta
      241 aaggctcgtt tgtctcaaaa atcacacttc ccactcagcg ccgctgctca cttgccatga
      301 gttgcaacag ttaatcattt agacagggac aaatatttat tcagggacta ccttaacgtt
      361 gaatgttatt tcctccatga cgtaaactcg ttcaggaaat gctttagcca cctcctccac
      421 actgttaaaa tactgcactg gctccttaat atctcggtct tgttccagca gcttaaactg
      481 ccctgaaaac agatgataaa cagaagaatt gtaagatatt tatattggac aactgtcact
      541 gtggcaactg ctggctcaac ttcttcacca ttttgctcgg tcaatttttc cagttattag
      601 caaccaaaca agaagacgaa agattgtaga gtctcctgaa cctgccatga aagacctttc
      661 actggcttgg aatgaaaaga acatgtggca gccaaagtga aattaaaaat tggtttatca
      721 catgctctct agaaatagta aataattatg gaggcatttg catttgtgta cttaactcag
      781 tgtcatagta tctgt
//
LOCUS       KCLJ01000084             420 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 9622cal ultra-conserved element locus
            uce-2435, sequence.
ACCESSION   KCLJ01000084
VERSION     KCLJ01000084.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 420)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 420)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..420
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="9622cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>420
                     /note="ultra-conserved element locus uce-2435"
BASE COUNT          128 a           64 c           87 g          141 t
ORIGIN      
        1 aataattgct ggctaacaaa taacccagaa agcaaactag catgaactct tcccagattc
       61 aacaagactg acatttatag ctttattgta gcagagacat ggcatttgga ttcagattgt
      121 ttggactgta gagtgtcagt ataaatagct atgattgact tttgtatgaa gcacatctgg
      181 aagcaattta tggcattcca gctagattaa agcatgtttt aaaggcattt caccagtctt
      241 tttttctggc tatggtgaat aaagtttcaa agacagttta gctgctgttt ctgttaatgt
      301 ggaccatagt gaagtcaaat taagggcaac tgggcaaaat agtgcatttg tttttgtttg
      361 ttttgctttg tttcccagaa tagaaaaacc ctgaagtgag tgtaactgga gttatattct
//
LOCUS       KCLJ01000085             602 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 9729cal ultra-conserved element locus
            uce-4952, sequence.
ACCESSION   KCLJ01000085
VERSION     KCLJ01000085.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 602)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 602)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..602
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="9729cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>602
                     /note="ultra-conserved element locus uce-4952"
BASE COUNT          188 a          124 c           95 g          195 t
ORIGIN      
        1 aaggagttat ttgaggcatg aatgtctccc ctaaagctgc agcaatcatg tggcattaga
       61 cacttccgga atcctatagc caacttgaaa aatcccagac cccttttttc cctaattttt
      121 gctctgatct gtaattttat ccacatttgc actagtttga gcattctggc tctcccatct
      181 gaaagcctgc aattactata taattcttcg caatttcaca tgtcctaata tggactgtaa
      241 tttttgcgca agacaatttc ctgctatttc aagcatcaac attgtcaaag ttgtatgtac
      301 ataataaatg ggaatatcaa tgcatagttt ttagcataac atcttgactc ctcgataatt
      361 atatccgttc ggagcctacg cagaattagc ctgaattgca tggtaactgc tgctgcttta
      421 aaatttttaa aaattactca taattttccc aaagattacc aagatctcga gtgcacaatg
      481 tcatcagcgt aatgaagagt aaacatttat gctaataatc tgcaattttt ttcatcagct
      541 ataaagacag aggctatata gcagaaaatt tcagtcatat tctgcaagag cagagctgca
      601 aa
//
LOCUS       KCLJ01000086             357 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 9839cal ultra-conserved element locus
            uce-1457, sequence.
ACCESSION   KCLJ01000086
VERSION     KCLJ01000086.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 357)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 357)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..357
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="9839cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>357
                     /note="ultra-conserved element locus uce-1457"
BASE COUNT           98 a           76 c           65 g          118 t
ORIGIN      
        1 aaaatctgct gaacactaat tatttaacct tacctcctac ctactttctc tctttattct
       61 gaggtttctt aagggctata atgagctgtc cccacacaaa caggccaaat tagtggataa
      121 ttactgctgg gtctgtgaat gttctcactc ctcctttctt acagtttcac aacattacca
      181 gaatggtctg tcacctccct accaattagg cacaattact actttataac attagtggtg
      241 gcaggcttat taccttggag aatatgtaag ggagggttgg ggagagaggg cagtgaatca
      301 ggtcataact tgtataattc ttttacttct attttgcaag gcctttatac acagata
//
LOCUS       KCLJ01000087             846 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 9947cal ultra-conserved element locus
            uce-1610, sequence.
ACCESSION   KCLJ01000087
VERSION     KCLJ01000087.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 846)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 846)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..846
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="9947cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>846
                     /note="ultra-conserved element locus uce-1610"
BASE COUNT          202 a          192 c          172 g          280 t
ORIGIN      
        1 cccttctttc cgtttcgttt caaaagggca aaagtctggg tagcgagcgc tcgcccgcgg
       61 cccgtgccac gggcggtgct tgcctcagct gctccatcaa aagccgctgt actaacggat
      121 cctgactgca cttagctttg tttccctgat atggtcatat cacatcagcc agggcacatg
      181 tgacattaca tccgtaactt taagcatttt gttgctatct tcagttggag caatgttgcg
      241 attcccgagt atattttttg gcagtccata gcacatttat gtcagataat ggcctattat
      301 tgttctctga tatggccggt tttccacgaa agaatgaggc cttttttccc gcatttgaat
      361 ttccagataa taggctttga cttctggctg cacgtttatg ggtcttttca tgttatcaac
      421 ttagctcata gcgtggaact aaagaacaca gactgcaagt gacaggccag ccagtcagca
      481 aggcaggcct gtcagtatct ctcatccact aatgatttcc ctttagtcta ttttctgtct
      541 cattggccgt ttccttcaaa aacaaaattg ctcatttaaa ttcttatgcc tggggcattt
      601 tggtcttcaa atattgttgg aaagtgaaag gattaggcaa aatatgcttt tttaaaatgt
      661 taatatattt tctggttcac tttctcctct gaggccaatt aggaaatttc tgctggctgc
      721 attaatgtca aactgacaac cctcgctata attacactgt gcttgaaacc taactttcac
      781 ttgtgggtag atgactgcgt ctggcagtga cattgaattc gctctgccag cttttgatca
      841 tttaat
//
LOCUS       KCLJ01000088             606 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 10057cal ultra-conserved element locus
            uce-4264, sequence.
ACCESSION   KCLJ01000088
VERSION     KCLJ01000088.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 606)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 606)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..606
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="10057cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>606
                     /note="ultra-conserved element locus uce-4264"
BASE COUNT          207 a          122 c           92 g          185 t
ORIGIN      
        1 ccacacagag atcttaatcc tggattaatt attttccatt ttaattaaag cagtattgct
       61 ttttcttaag ttctttatct actttcttta agtaaagcta tttaatactg gggattgtgg
      121 aaaacatttg ttcgtgatta tgcagacata cagtcaaaca agactgaaac aagagcagca
      181 tgcaaaaatg tatttaagga ctatcatccc aaaatgctgc taaaagctat taaccagtac
      241 gtgttaattg ccacagcatt catattaatt ttcacttcgg gcccgacatt gtggaatatt
      301 tcccctgata cattttaaac aaagtttaat ttaaggaact gcttctatca acacttatga
      361 aaattaacag ccaagcaatt agcactcatg aattatccct tcccccatgc ttgctacagc
      421 atcattttta tgagaaattg ttgtagccac gagaaacctt gtggcactag agagagctca
      481 ccaaaggaag catttgtcca cccaaaaatt acattgatca attttttatc tccagtagtc
      541 aagcaaagac cagagaactc cataagagca gaaaagcctt ctaattccat tcatgaaagc
      601 agaaat
//
LOCUS       KCLJ01000089             632 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 10166cal ultra-conserved element locus
            uce-5927, sequence.
ACCESSION   KCLJ01000089
VERSION     KCLJ01000089.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 632)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 632)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..632
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="10166cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>632
                     /note="ultra-conserved element locus uce-5927"
BASE COUNT          222 a          120 c          115 g          175 t
ORIGIN      
        1 ctgctgcagg agacacaaga attatctgct gctgtagtag ggaaacagaa ttaaaaaacc
       61 cctgaacatg taggtccatt atttccattt cacaataatt atgcagtgtg ttaaacaatg
      121 ttcacttcca tctgatgcaa agcccgctac ctggaaatac acaattacca taataccttg
      181 ctggttagac atacggtgag actatgatta tgcagaatgt tggaagaact ttatgtataa
      241 aattattctt gaggagaaga ccacgaagta aaaagctaag ccagcacatt atctaattct
      301 caatgtaaaa taatgcagaa gtgcggaaga tgaacatctg atttgtcaca tctgatacgc
      361 taatgtttta tccaaaagga agaacacatt gtaacatgct cattcatctg cataaacacc
      421 acctggccct ttacaggcac ctactcaagt aacaaaagtt aatggcagcc catttgtagc
      481 catttcactg gtagagatgg aaagaaagta acatatttac atgagtgtct gttgaggaac
      541 agctttgctc tcaatttgaa accccattct cagtgactgt caattaagga aattccaaag
      601 aaatgttaga aaatattatt taaagcctgt ag
//
LOCUS       KCLJ01000090             529 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 10277cal ultra-conserved element locus
            uce-1070, sequence.
ACCESSION   KCLJ01000090
VERSION     KCLJ01000090.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 529)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 529)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..529
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="10277cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>529
                     /note="ultra-conserved element locus uce-1070"
BASE COUNT          188 a           87 c          122 g          132 t
ORIGIN      
        1 gaacccacaa atgtgcttcc cagacgcatt attgatttct gacctacaaa ttactctcct
       61 tcaaggaggg ctgatgtgga acacagacag tgggggaaga gggctggagt agacagggta
      121 cttctcagct gcaatctgca taatgtttag tattcagtga gttaaagcac gcaatgaaag
      181 ggaactgtca gcgcaatcta gaagatataa agaaatgaag gggtgaaaaa aagccgtatg
      241 ctaataatcc actcagtaat taagtgaaga tcgctgccaa gcgccactgc cactttcaaa
      301 gggtaatttg tacaggaaat catagagtca ttgtcaaatc atttcaggat aaaaggaaag
      361 tcatcaacta agataagata aatgctgggt gtctggcagc atgtgcccta ggaaatgcct
      421 tatattggaa aaaaaaattg caaaagtggg gctagaaaac ttgacatgtt gaaatgcaca
      481 tttactatta ataatagagg tgatatatgc atagatgcgt tattaaata
//
LOCUS       KCLJ01000091             588 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 10388cal ultra-conserved element locus
            uce-5357, sequence.
ACCESSION   KCLJ01000091
VERSION     KCLJ01000091.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 588)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 588)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..588
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="10388cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>588
                     /note="ultra-conserved element locus uce-5357"
BASE COUNT          188 a          126 c          113 g          161 t
ORIGIN      
        1 tctattgtgc ccacattctt aataactctg catctgacta tctaaatcca ggctcctgca
       61 aaaatcagcc aggaagatgc tcgcaccaaa cacagcatga gccttgcatt taatcggtta
      121 ctgtaataaa catataaaaa aagaccatga gaggacagag cagtggctac ataaaaggac
      181 atcaaatgac acatcctcca tctcccagca aataaaaaag ccatcagctc ataacaaggc
      241 ggtgataaaa ggtgctgagg ccagtaagat taagactttg taataaggtt cgggcgccaa
      301 aactgacagc cattttcttt tatatttatc atgtcttcac attggggtga gaagccagga
      361 gtctgtccca ttgctggcta gaatttatag cagctccatt attaggagat tgcactgaaa
      421 tggggcagag gtatggtttt ctgagaacgc tacaatagcc tcctacatta tacacttgac
      481 aggtttgtca gcgcttagta acaagccttg taaagtactt taatatcatt agcactattt
      541 tcttaatgtg tctgctctcc tagcagcctg aaaatatcat atatcatg
//
LOCUS       KCLJ01000092             395 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 10495cal ultra-conserved element locus
            uce-2677, sequence.
ACCESSION   KCLJ01000092
VERSION     KCLJ01000092.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 395)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 395)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..395
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="10495cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>395
                     /note="ultra-conserved element locus uce-2677"
BASE COUNT          138 a           65 c           71 g          121 t
ORIGIN      
        1 taagtgatgg gaggaaaaac ctgcagccat tccactgaat tctattattg acaacagcag
       61 aagtaaaaaa attagaaaac aaatcccttt ttaaatagaa tgaagtaaaa gacctacatt
      121 gcttggagga aatgctaatt gaaaatacct tgctaatgct agctagtcac aggaaggaaa
      181 cattaagtta ttatttttaa taatgtttac aagtatatcc agccatttcc agccagtgaa
      241 aaatgttagc cttggtaaaa tgtggcagtg ctacttttca ctggtgatgc tgctcatctt
      301 ctctctgata gcaatcatta attttatttt ttaacccagt cttcaaatga agacagatga
      361 gcaggagagt tttaaatgca agctgcttat gttca
//
LOCUS       KCLJ01000093             579 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 10601cal ultra-conserved element locus
            uce-5594, sequence.
ACCESSION   KCLJ01000093
VERSION     KCLJ01000093.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 579)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 579)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..579
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="10601cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>579
                     /note="ultra-conserved element locus uce-5594"
BASE COUNT          185 a           93 c          105 g          196 t
ORIGIN      
        1 agctgtgcac agaaatatat acatttgatg gtcattatga cacatgaatg ttcaagacaa
       61 aaagtgaaaa atacatttta agttctgtat gtatgaaaaa ctgacaatga tctgtaattt
      121 gcgtctaaaa attctataaa tctgctggtg ttttcagcat tgaaagcttg attctaaatg
      181 gaaaggtcat tatcattatt aagttttata agaaaatcag tacgtgtact agtatctatt
      241 taataactga gacatcatga atgtcagact taacacactt tgctgggtgc taataactct
      301 ttaagtgtac ccttgactcg agtcgaaggc agtattggaa tttttatgtt atctgaactg
      361 cctggtagca tttaaaatta cttccataat agccaggtaa aaatatagtg acttcacaca
      421 actttaccta attttgctcc tgtttcaaag gttaagctaa actcctttct tgtgaagaac
      481 tggatgtgca ggcaggtgag tcacaatgga cctgtcctac ttaaccattc tcttgttttt
      541 attggagcat attgtgcttc ctgagaaaag gatgtgtca
//
LOCUS       KCLJ01000094             223 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 10705cal ultra-conserved element locus
            uce-2469, sequence.
ACCESSION   KCLJ01000094
VERSION     KCLJ01000094.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 223)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 223)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..223
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="10705cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>223
                     /note="ultra-conserved element locus uce-2469"
BASE COUNT           37 a           47 c           79 g           60 t
ORIGIN      
        1 atggaggtgg gttttgggta cttaccctga atctgactct gaggctgagg gttaaaagct
       61 gtgctgtggt tcaaggaggc tcgagggttg ggtgtggggg ctgggtggtg tgggctgacc
      121 ctcatggccg tgcgacgcaa ctgctccagc tcgctcaggc gctcagaaaa ggacaagctg
      181 ccgggttttg tctgctcatc tattttctga cgatgtccta gtg
//
LOCUS       KCLJ01000095             738 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 10805cal ultra-conserved element locus
            uce-720, sequence.
ACCESSION   KCLJ01000095
VERSION     KCLJ01000095.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 738)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 738)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..738
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="10805cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>738
                     /note="ultra-conserved element locus uce-720"
BASE COUNT          247 a          128 c          116 g          247 t
ORIGIN      
        1 attctgagag atgagaaggt cccgaggctc tgaactgcca gggagctgca gcaggacaat
       61 ccatcctggg tacaacacaa gttctttgtt cttgctcatg ctttcttcac tctacattaa
      121 cacattttta tcaaaaatag caaaattaat tttgcaaagg gatgattgta ttgcaaatca
      181 ctgttaacgt taaaagactg gataaagaat tattaatacc attaatgtaa tatctaagtt
      241 acacctatac atccttttcc atagaaaatg gttcttaatt ttcaagttgt tctgctttat
      301 taaagctcat taccatttct cttttaataa gtgctcttta aagtcattac ctgcagtgaa
      361 gttaaaggca gagctattaa aaggttactt taatgtgaat aatggcctcc caatatactc
      421 aagttaatta ctattggaaa ctggttctat tttaatttaa tgctgaatgc ttaatgaagg
      481 atctgccggg atagcaaaac tgacaaaaat tattcatggt caacagacct attcttgctg
      541 tttcatttaa agagataata tccatttcaa gttctacata actgcattta aaaatcaaaa
      601 ttacatttta atattttccc tggatatgcg gaaatgaaaa atgccatttt tgaatgttca
      661 atagcgtggt aggtagaaga gcgatcggtt cctcagctca ctaaaaataa cattaaaatc
      721 attaacatct tgttccac
//
LOCUS       KCLJ01000096             773 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 10914cal ultra-conserved element locus
            uce-1781, sequence.
ACCESSION   KCLJ01000096
VERSION     KCLJ01000096.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 773)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 773)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..773
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="10914cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>773
                     /note="ultra-conserved element locus uce-1781"
BASE COUNT          207 a          161 c          181 g          224 t
ORIGIN      
        1 tcatgctgtg taggaggtaa agggattctc tcgttctctc ttgtacactc ttggatatgt
       61 ggacacacat cctcactcct actccccctc tcaaaagctg ggctaatagg aaaggtagca
      121 gtatggaaag ggggacagct taatcacaat tacttgagca gttgttcttg gcttagtgtc
      181 ttggttcctg tttaatccat cactggcact tgtaaagtac agtgggcttt acagcaggcg
      241 tcagtttgat gcttgttgtg gttaacagtt aacaagtgct ggttagacac aaaacccgcc
      301 atgtacttga tttttttaaa gaaggccaca gtgttcccta agggttgtga gagaagttca
      361 tcccattgaa ctggtcagca agatatcatt agcttgttgt gtacatgaaa tccaggggtt
      421 agagcaccaa gcgtcacaag ccagtttctt tacctccttg agctgatcag aggatcagag
      481 tatcaaggaa ggattagcac tgacttggga tttgtgtgat tggttaattt attgcggcga
      541 tggcaggcct ttcatctatg gcaacattta atcagcacgg ccatggaggc tattacgggt
      601 tagctctttt ctcaagtcag ccagggctgc accatcagcc ctatcacaat tcccctgaaa
      661 tttccaaatt atctggaaca ggctttagcc tcacagtaat aaaaattaga agagatccct
      721 gatagcgctg gtggaaaagg ctttcacttg cacagggcaa attataaata gta
//
LOCUS       KCLJ01000097             414 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 11123cal ultra-conserved element locus
            uce-450, sequence.
ACCESSION   KCLJ01000097
VERSION     KCLJ01000097.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 414)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 414)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..414
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="11123cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>414
                     /note="ultra-conserved element locus uce-450"
BASE COUNT          128 a           85 c           88 g          113 t
ORIGIN      
        1 tgcttcctag tcaaacttga atatgcaatg aagctccaga gctttgtggc ggaaatataa
       61 ttaaactggt gaaagatgta aaagatgaag aatggggatg acatcaggcc gatttcacac
      121 ttggcactcg gatggctggg cccaagccgt gctcttgcca cgcaacacag atcaaagtgc
      181 actgccactg ctaaaaaggc aaaaggggac ttaagtatgc taatccccag gacaaatata
      241 ttttaatctt gttagaatac aagttaatgc tgcagctcag tggctgaact ttgtcagagt
      301 gtagagatct acttttactt tagctctgaa tgaggtagac ctcctggttt attcatactt
      361 cataaaagta aatttactaa atgagcctcc ttgcagctca cctagacact catt
//
LOCUS       KCLJ01000098             282 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 11233cal ultra-conserved element locus
            uce-2995, sequence.
ACCESSION   KCLJ01000098
VERSION     KCLJ01000098.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 282)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 282)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..282
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="11233cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>282
                     /note="ultra-conserved element locus uce-2995"
BASE COUNT           91 a           43 c           77 g           71 t
ORIGIN      
        1 taaataaaat cagtgtgatg ggtgagcagg tcgactgtgt gagagaacac gtgcaaagta
       61 tacctcagaa acactatagg tggatgagca cgaagggagt cgagcctggt tgtgcagtgg
      121 ggaaaagaaa acactgttaa aaaagaaatg gtggcacagt aagggtctca gaaggttttc
      181 tgtataggtg gttccagcac tgagatagtg gcattcataa agtttccaag accagctatt
      241 tcagaaactt caaatttatg ccttttaagg tggaagcttc tt
//
LOCUS       KCLJ01000099             522 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 11343cal ultra-conserved element locus
            uce-1787, sequence.
ACCESSION   KCLJ01000099
VERSION     KCLJ01000099.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 522)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 522)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..522
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="11343cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>522
                     /note="ultra-conserved element locus uce-1787"
BASE COUNT          151 a           99 c           97 g          175 t
ORIGIN      
        1 agcaactgct ctacctttat ttattgcaca cataaataat catacttcaa ttaacatatg
       61 atctcttccc agattaacat tgccacaaga ctacttgttt tggctactgt aaatatgaca
      121 tgaattcctc ccaggatttt acacgctgtt tttggagtaa aagattttct tctaatatac
      181 ctacacaact gtcacaggga attgccctgc agatttagtg atgttaagtg tcaattgtaa
      241 tttggtgaca gccattttat tggctatgca tattgctctg tgaggaccta cttctcagta
      301 tggaagccac cgtatcatta aaacccactg atccttcact gatgacataa tttgactggc
      361 agagagagga acagtgagtt gtttccacct gtgtggaatc tgctgtgtgt cagagatgaa
      421 tttgccctta aattagaaac agcacagcag acttgtgcct gtgattttgc ttgattttaa
      481 ggagttttac aggaatgata tgaatctgtt taaatatgtc aa
//
LOCUS       KCLJ01000100             773 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 11448cal ultra-conserved element locus
            uce-2294, sequence.
ACCESSION   KCLJ01000100
VERSION     KCLJ01000100.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 773)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 773)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..773
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="11448cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>773
                     /note="ultra-conserved element locus uce-2294"
BASE COUNT          216 a          166 c          118 g          273 t
ORIGIN      
        1 aacatatata ctgtcattgt acctctcctg tgtggatgaa atggccaaat atttatacat
       61 atgacattta ctctacatat ttacccattt tgaaaatgat aatataaaca ttctggttat
      121 aaaatctgtt ctccccatca tgccacagag tcaaagtcta catcactact gctttgtttg
      181 gtatgaggtg tataaaatac attaaaggtc tttgttttac tgtattatga aattaaaaac
      241 catgcagtct ctgtaattac attgtccttt gccgtctctt taaaaaagaa aaagactgtg
      301 ttcaaatttt ccccctgttt tatttgcacc ctattaacaa ctgttactag agctttaatt
      361 atgcccctgt gattgcagag atgcggctga cttgtgtcat tttcctccca ggggatgctt
      421 tataattacc agcatccatc gtggctgcct gtaagctgat gcttttttat taccagttca
      481 ataatcactg catccttgtg aacatctgct ctacaagcca tgcattggag gtcccagtgc
      541 ctgtcactcg atgctccctt gctgtggcga cccttttgcc ctcaccttca gtttatatct
      601 aatttgctta gcagaagctt catccagatt gcctcacagg aacacaatta atgctccaga
      661 tttgcaaaca aagaaatttt cccccttttt tttgtcttat tatcttgatg tcatatcata
      721 taatttgtat tcacagcagg gtgaatcaat ataaatccaa aaatatagta ttt
//
LOCUS       KCLJ01000101             363 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 11558cal ultra-conserved element locus
            uce-3715, sequence.
ACCESSION   KCLJ01000101
VERSION     KCLJ01000101.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 363)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 363)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..363
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="11558cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>363
                     /note="ultra-conserved element locus uce-3715"
BASE COUNT          102 a           85 c           65 g          111 t
ORIGIN      
        1 tgtcagcacc aatccacctc ggcgcctccc cgctcttcag tcaggctttg tggcccctcg
       61 tcgcttgttg ttcaagctgt gtgtcacagc cagtcacaac agttacttca agcaaatttt
      121 cacactcttt ggctcaaact gctggcagca ttcctaaaga ctctgaggaa ataattccac
      181 aaagtggcat aaattaatgt gactaattaa catgatgtta attatttgta aattgtatgt
      241 ttggatacac attacttgag aggcatatgt tacattcaat gtttactgaa acaagtgact
      301 gctaatcgca tctcctgagt gttcctttca caacagtcag caaatagagg cttctctaaa
      361 aat
//
LOCUS       KCLJ01000102             683 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 11659cal ultra-conserved element locus
            uce-2874, sequence.
ACCESSION   KCLJ01000102
VERSION     KCLJ01000102.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 683)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 683)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..683
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="11659cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>683
                     /note="ultra-conserved element locus uce-2874"
BASE COUNT          184 a          151 c          118 g          230 t
ORIGIN      
        1 aaaacccaca tttacaatcc ctcctaaaaa caagtagaac actgcaccaa cctaagcatt
       61 atctcaatta aaaaatgaaa tcctttctca gcttaataac ttgttagttc ttgacaagtg
      121 caacaacaca acaataagcc agtcaaaatg agtttttaaa gcgaggttat gcccttcatg
      181 ttgtgttatc acagtggcag atcaaactgc tgacttggac tctttctgcc agcagtgctg
      241 atgctgcctc tatgagctac tgtcacagaa tagtcatggt acctgctctt gcctatagaa
      301 aagcactaaa ttgaactcga agtagtgtct ttgtgatatc ttttcaacaa gtcatgtccc
      361 attcagcctg ctagtttatc tctgtcaggc tgggggccca agtggtttgc atgagctgtc
      421 agggacaggt ctaccaacct gctcagtgct aaggaggtaa tgcatctttc gagcttggta
      481 tttcttttcc ttttctttct tttccaggtc tttcattttc tcttcatttt ccttcatatc
      541 tgcatattct tgaagttcat acctgtgtct gctaactata ttataacgaa agacatgcta
      601 gtcttttatt ttactttaca tagcttcaca gtgttttgtt ctgcatattg gcagtatact
      661 ggcaccactg gaatgtaaaa tta
//
LOCUS       KCLJ01000103             604 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 11767cal ultra-conserved element locus
            uce-1538, sequence.
ACCESSION   KCLJ01000103
VERSION     KCLJ01000103.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 604)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 604)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..604
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="11767cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>604
                     /note="ultra-conserved element locus uce-1538"
BASE COUNT          163 a          118 c           99 g          224 t
ORIGIN      
        1 ccattattaa tttttactat tagttgcatt gcaggacagc aagtaccagc aggtatggtt
       61 attttagctt ctaatgcagc agcctttcat ccctctctgt aagatttacc tttaacctaa
      121 aatctttcac ccgttatcta gaatgtataa ttataaatac attgtcgtct agagtaagta
      181 caattaaaaa gggtaattag tttccctcct tctctcccat cctcccaccc aagtccttag
      241 gtttaatttt catgattatg ttagattatg agtaatttta aatcatggta tccagtagag
      301 actactccta ctctgcagct cttttcaaca gttgtttatg gtagtttcag cctctttctg
      361 cctctctgag gctctttatt tttaaagcaa ggcagacaag gcctaaaatt attccattaa
      421 agaggtgcaa tttttgtaat gggacttaga gtgctctgca gaagtgcagg caagtttctt
      481 caatatcctg agcattattc gctcatttag ttaaatgatg tttctaattc cctggtaatt
      541 acatgtaatg aggcactctt tctcttcttg atgagacttt agcttaatat gagatgtcgt
      601 attt
//
LOCUS       KCLJ01000104             602 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 11874cal ultra-conserved element locus
            uce-4332, sequence.
ACCESSION   KCLJ01000104
VERSION     KCLJ01000104.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 602)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 602)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..602
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="11874cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>602
                     /note="ultra-conserved element locus uce-4332"
BASE COUNT          175 a          121 c           91 g          215 t
ORIGIN      
        1 ttcttaatta ttggatcacc aacatcaaat aaaagacata ttaaaccttc caggaactga
       61 tgcagcttcc cccaaagctg gttcagtgct gcttctgtgc acgcctgaaa atcagaaatg
      121 gctttgccat ctcatactgc ttctgtttgt ccattcttcc tgtctctgtt ttcatgtttt
      181 catttttcta tggctgtgtg gaacacattt ctcagttaag tacttgcttt tgagagttgt
      241 tgccataaca accgtttcat tccacgatat gcacactatc tctgaaatac agaatttctc
      301 cttaaaggag catgtgccac acacatcaaa gaggaatatg gactcattat ttttacatta
      361 ttttgtgggc aaatagatgt tttccaatac attcttttct aactgaattt tcttgttcac
      421 tgaaactatg ggtttttaag cattcctatc tcatagtata attttttgcc tgcaacccag
      481 aatattagaa gacaagaatc tttattgttt ttctccaaag gtctgagaga actatgctgc
      541 agttaatgca tttaaaaccc atcttattag acagattatg taaataaaat ccattaaaaa
      601 tg
//
LOCUS       KCLJ01000105             524 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 11978cal ultra-conserved element locus
            uce-761, sequence.
ACCESSION   KCLJ01000105
VERSION     KCLJ01000105.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 524)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 524)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..524
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="11978cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>524
                     /note="ultra-conserved element locus uce-761"
BASE COUNT          165 a           91 c           86 g          182 t
ORIGIN      
        1 ttccctcttt gcatttttag gctagttctg ctgtttgcta tagtaatatt tgttttagca
       61 tttctatcac tccaatatgt atacttgcct ttcaaaatct gtgaaaagta tttaaaaaga
      121 aaagagaaaa tgctagtatt tcaaaaccct attataatgc attttcaaat atgtcagaca
      181 catctttgtt aaaattaaac caaggattgg ttttgagcga atagccctat atccttacag
      241 atgctgtgga tggatgcatc taagctgctt attatattga tgggttttgc tgctctgcag
      301 caaatgaaaa caggcagctg cttcctccat caaagcaaaa agcagcctga gtttttatta
      361 aacgagtgtt catttcttct attgccaaaa ttcttacaca aaacaaaaga gcagttttag
      421 cacattattg cttaactaga catgaacaac tgacagcaag tgataagcct gtctgctttt
      481 cacaactggt aatcattttt ggaatagatg ttttaatata gttg
//
LOCUS       KCLJ01000106             622 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 12088cal ultra-conserved element locus
            uce-4494, sequence.
ACCESSION   KCLJ01000106
VERSION     KCLJ01000106.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 622)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 622)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..622
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="12088cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>622
                     /note="ultra-conserved element locus uce-4494"
BASE COUNT          201 a          111 c          122 g          188 t
ORIGIN      
        1 ttttaaacac ttcaagatca acaggatcaa ataaaagtcc acttttgtaa acaacttttt
       61 gtgtattaat tattatcgta gatcttccca aatacctttg tcaataaatg ttttacagca
      121 ctgagttcat gctgcatttt accttaaagg aaacgcttta ttttaaagtg tactagcctt
      181 tcctgcaagt tgtaaaaaac ttttggctga aatctgcacc ttcgggaaga atttctgatg
      241 tgttcagaac atggaagatt ggaaatcagg accagtttgt atgtcccctg gtgttgtcag
      301 agcttcaaat gacccaacag cctgcaaatg tcacatttaa aattctgtct tcatgcctga
      361 ctctcagcat aaatgaatta aacagcagag caggcagcca gtcaatatgt tcttaacagt
      421 gagagtgagc aatgaaacag tttgggggtt gtttggaatc agtaaataga aagtgcatgg
      481 aatggctcac ctagaggaaa agctcaaata ggaaacagaa ttaaccttta aaatggtcga
      541 gcagaccaaa tgtcatagca atatttttcc agcattaggt gggtaataac cacagagtgt
      601 tcatttggcc attgtgtgtt ac
//
LOCUS       KCLJ01000107             380 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 12199cal ultra-conserved element locus
            uce-4629, sequence.
ACCESSION   KCLJ01000107
VERSION     KCLJ01000107.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 380)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 380)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..380
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="12199cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>380
                     /note="ultra-conserved element locus uce-4629"
BASE COUNT          113 a           63 c           81 g          123 t
ORIGIN      
        1 tttgtaactg actctgtctg tctgaaaggc aaacaccacc taatttcttt tttctaggtt
       61 aagagatcca taggtgtagg gcatatttat tcaacggttt gtctagtgta gactttattt
      121 taggagcaaa cataaacacg aagaaactat aatcctggtg taatgtagga atctaattaa
      181 gactaatgag gcaacattaa atttaatgta tgatgcattt tatatgcctt accattagag
      241 ctgcagcaag ctgttcgtca gagcgttgaa ctttggtgaa taagcccctc aaggcattgt
      301 taaacaattg gggctcaggc cttctcctgc ccattaggtt gtgttgggct tggaaaaatc
      361 tagatataaa tggagatttg
//
LOCUS       KCLJ01000108             653 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 12309cal ultra-conserved element locus
            uce-7218, sequence.
ACCESSION   KCLJ01000108
VERSION     KCLJ01000108.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 653)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 653)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..653
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="12309cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>653
                     /note="ultra-conserved element locus uce-7218"
BASE COUNT          173 a          112 c          157 g          211 t
ORIGIN      
        1 tcaagctgcc tgagctaact agctttgcag agggctatta cctatttaca atcaagtcaa
       61 aatagcttgt atttatatag ttcaccttga tagctttagt tcagcagagg tacagattga
      121 atacaacatc atgtaggaat atggggaccg aagtacctga tttccattgg cttggatctg
      181 ttttggtggt gtctcatgaa ctgcaggact aactgtagta gagtatgtat aagccacctg
      241 tggaatcaaa atggtttgct tattggcagc gagagctctc aagcagggaa cactgttctg
      301 gtcagcaatg gcaacaattg taggtaactg ggcagtgact gtaggtatag caatatttat
      361 gggattggca cttggtggga ttacatttac aataggatca gagtctgtaa cactgttgtc
      421 cttttgtggt tctttttttg cacaagttaa gttcaaaggt tcttcttgga cagaataaac
      481 actgttctgg taaacactag ttatggtaga tctttccaac agttctccat gttgctttgg
      541 tagcgaaagg tcaagaggtt ctatttgtgg ctcttcttgt acaccctctg ccgtgtacgt
      601 gtaaccctgt gaatttcttg atgaagaaag gtttagtggt gatacagatg acg
//
LOCUS       KCLJ01000109             853 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 12420cal ultra-conserved element locus
            uce-231, sequence.
ACCESSION   KCLJ01000109
VERSION     KCLJ01000109.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 853)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 853)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..853
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="12420cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>853
                     /note="ultra-conserved element locus uce-231"
BASE COUNT          305 a          138 c          142 g          268 t
ORIGIN      
        1 ttggtttcag tcgtgtgcat agatatctca gcaattccat ctaatttaga gaagtcactc
       61 cagatttaca ccagtgctac tgaaaatcaa aatctggccc attgtcttag caaaatacac
      121 caagtcaata tcagttcatt acagagagga agagagaaag ggaatgagag agaaaacaag
      181 gatttcgtta gcaatgcatt ctgtagtata aaagataaaa aggaatatcc aattaacaca
      241 ccactataat tgcttgcaga cattcttttt tatttaaaga tgaaatagct aagagttctc
      301 atcaaaactg gggtcacagc ctacatatta aatgaaagaa attgattggg ctttattaca
      361 ccctgactac tgcaaatgtg cctcaatcac tgattgctat aaatttattc ttataaacta
      421 ctaattgccc aagtcataat ggtaacaatg gtataatgaa attatcttga tcaagctgat
      481 gcacaaattt tgcttgacaa catgagcagt gtgagaaaaa aggaaagaag acatgcatac
      541 aaatacataa tgtttcatta aaattaaaac caatgttaaa acaactgttc tctgaagtat
      601 acaaagttct gtattagaag ggcttccttt agaaaaatca tttaagaaga caggcattta
      661 catttataat aaaatgatct tgcatttttt atttgtcttg aaaattaatg acttacttaa
      721 tcacatttga tcaaaggagc taagttgatg tagtcatgtg tttctgattg cattaagcct
      781 gatccagagt ggcatgatgg atatttaata gtcttgctgt ccctctatat cttgtcacca
      841 tttcttgata tgc
//
LOCUS       KCLJ01000110             645 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 12533cal ultra-conserved element locus
            uce-47, sequence.
ACCESSION   KCLJ01000110
VERSION     KCLJ01000110.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 645)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 645)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..645
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="12533cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>645
                     /note="ultra-conserved element locus uce-47"
BASE COUNT          188 a          163 c          119 g          175 t
ORIGIN      
        1 agataatgcc gaggatgctg tcaacgcgcc ttactgactc ctgtcaaaat attttaccta
       61 gtagctttat aacccatcat tttcaagcta cagctcagca ttctgacacc attttgacag
      121 gcaccttaca atacctaaaa gatagcttga tcaatgttaa aaatgtttgg tacaagaagt
      181 agccaaaatt ggcagtgacc agagcaagct gaacagccgg gttcattact gtgtaacaac
      241 ttgtaagcca ttgacaactt ctaccgtgca ctctaaaccc cgtgtataat atcataagcc
      301 gttgtttgtg ttactctcca ctgtgtcttc tgccttcaaa aaaaggcaag atttgattat
      361 ctccgctgca tcagccaaga cagcaacacc agctgttctc attgtgcagc ctcttcctca
      421 cggcctacat gttaataacc tgatcattcc attttctcct tcaactgccg gctgcagcac
      481 agcgaagaga caaaaaccca ggcccatctg cagcagctgt aggcactgaa ctgtgaagcc
      541 accagggatt tataaactaa tctgtaacac aacactgcct tgtttttaca agtgagaggc
      601 cacatttgtg cagacctgat cttttcttgc aataaactag gaggg
//
LOCUS       KCLJ01000111             385 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 12643cal ultra-conserved element locus
            uce-5743, sequence.
ACCESSION   KCLJ01000111
VERSION     KCLJ01000111.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 385)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 385)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..385
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="12643cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>385
                     /note="ultra-conserved element locus uce-5743"
BASE COUNT          115 a           64 c           96 g          110 t
ORIGIN      
        1 aaaaaaaatc cgcgatcatg tgggaaatgt tgattttaat ggaaaaattg cattgtgctg
       61 actttcatag agtagaaaat ccacagagtg agacttcagg cttggcacct gctccagaac
      121 cttcctgatg aagcaaaggt tgtcttcatt aagagcatta atattcatgc agcatggtaa
      181 ttttgacaca gaaaaggtct ctgtaacctt ttcttgtgtg agaatttttt acttctcaag
      241 gaaattacag tccagcaatg acttaattaa tgctgggttt cttcagcgga ttttgaagag
      301 ctgtcagttt gggcttgcag tagctgtcaa gcagggagag ggctctggct aggtagattg
      361 aagggaagga gggaagacac ccaag
//
LOCUS       KCLJ01000112             357 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 12740cal ultra-conserved element locus
            uce-7103, sequence.
ACCESSION   KCLJ01000112
VERSION     KCLJ01000112.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 357)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 357)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..357
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="12740cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>357
                     /note="ultra-conserved element locus uce-7103"
BASE COUNT           98 a           96 c           62 g          101 t
ORIGIN      
        1 agcagctcca tgaccccgca acgctgcggg acgcgcggct cccgcccagg gctcctgccc
       61 cattcccccc gtgcaatccc ggggaattat ccatatctct gacaagagaa taggttacta
      121 atgcaccaac acagctgttt tgacactttt gatgaataac attcaatact attaattgga
      181 acaattgctt ttcatttaac taaatcacta gaattgctaa actaaattga aacggaatgt
      241 aattttgcct cgctctcctt taatatgggc ctctaaatgt cttctccctg aagaattagt
      301 aacttaatca cctaccagtg ataactgttt catagccctc agctggaagg ctttcct
//
LOCUS       KCLJ01000113             676 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 12843cal ultra-conserved element locus
            uce-2870, sequence.
ACCESSION   KCLJ01000113
VERSION     KCLJ01000113.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 676)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 676)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..676
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="12843cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>676
                     /note="ultra-conserved element locus uce-2870"
BASE COUNT          175 a          126 c          151 g          224 t
ORIGIN      
        1 ctaattttct tctggtggga acatcactgg atgattgagg cattatcact ttgaaaagaa
       61 ccttaatcgt gtgatcagtc tataaactag attttgctca gtgtgagctg gggtgccggg
      121 cctggccccc ttggcttcgg gtgaaccact cacttcattt tacgtggtct ggactttgga
      181 tttaagcctg ccaaatatac aataagagtt aatcttagta aattattctg agctttgcaa
      241 atgcttgttc atttagtgtg caggagtttt gtttacaatg ggcattaggg aatgtcagtg
      301 taagaagagg tggacttaat gggttaaaaa ctgtgtaaat gttactctag ttaaattaca
      361 gcttgttgtt cagatgaata ctctccactt ctcatatagc tttaaattat ggacaaatgc
      421 ttgcaattgt gaactaccta cattgtggct gcctgttccc aggcttcatc aaccctagct
      481 gtccaatggg attactgtaa gctttcacgg cagtctgcca gccactgatc agaaattcat
      541 atccctggat gttagattgc tctctttatt ccatccttgt gatggctgtg attgctgtca
      601 tggtgttagg ttagaaatta gcattttgtg gcccaaattt tgccatccag aacataatca
      661 gaaaaaagag ggtggg
//
LOCUS       KCLJ01000114             603 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 12954cal ultra-conserved element locus
            uce-6938, sequence.
ACCESSION   KCLJ01000114
VERSION     KCLJ01000114.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 603)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 603)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..603
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="12954cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>603
                     /note="ultra-conserved element locus uce-6938"
BASE COUNT          204 a          106 c           98 g          195 t
ORIGIN      
        1 aagaaatgtt tgctttatac tctgcacaga tgctgtacaa gcaaaattcc cagtatatta
       61 atataaactg tctgaaaaaa ttcgacccga ttccataaga ccagcaaaaa caaaacaaag
      121 ggaagcatga cgtttatgtt cctccagcac aaccatgcaa gctgagctgt gaaactgtga
      181 tggaaatatt agagctgttg tgcctgaaaa aacgcagtga tcatttcatt cttcctgtct
      241 tttaatgctc cagggttttg gagacgaata ggagcaataa gttcactttg cagaattaat
      301 gctgtaattc tttatcataa gagcagagca ttacctcaat ctgatttttc tacaaaaagg
      361 ttcaaagtct atttttaatg atggccctaa tttgttaaca ccttttaaat tattaatccc
      421 ctttatattc aagtagttat tgcatgtcat aacaatgtat ctatgcaggg aaatttaata
      481 gtattttctg catgtcaaga aaaggcttgt tctgcaaaat gctattaaaa ctgataatga
      541 gctaaatatt tgccatagca aacactgaaa ttactatatc aatcaacttt gggttctctt
      601 att
//
LOCUS       KCLJ01000115             690 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 13064cal ultra-conserved element locus
            uce-4553, sequence.
ACCESSION   KCLJ01000115
VERSION     KCLJ01000115.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 690)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 690)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..690
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="13064cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>690
                     /note="ultra-conserved element locus uce-4553"
BASE COUNT          218 a          133 c          104 g          235 t
ORIGIN      
        1 tatttggatt atcttccttc taaacttctt ccaaattata ccacaaaagt ccaaaactaa
       61 gtgtgctcca agttcttctt gagttttctt aggctatggc actgtaaaaa tcttagaaaa
      121 taactgcttg ataaaagcat ataattcaaa accattcaac aaaatactca tcagaagaga
      181 tctcttacta ttgctcccca catgcaatca atatatcact ttaactacag tgcttttacc
      241 ctctgtttat catcccttct gaagccatgt ggaatactca tcttctctaa tccttgtcta
      301 tagtatttcc aaagtacttt acaagcttgg agtaatggac tttaatgcct tgcagcagct
      361 gagctggtag catatatgat accttaaatg taacaatcaa aggagcatgc aagattttgg
      421 tatttccgct gacttgcaga tgtgcagtat ccaggtccaa aaacagtaat gtcaagttta
      481 gactaaaact gtttaaaaca aaataatatc tcattgcttt atgtcaacac tcctataatg
      541 tgagaggata ttctctgata gagagcacca gtattaaata tctgttatct gagctctaca
      601 gtaatttctt ttttgtatgt ttgtccatga ataaccttgc tcaagattta tgtaacagag
      661 tgtattgttt tattaatcca gagcatgtgg
//
LOCUS       KCLJ01000116             506 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 13174cal ultra-conserved element locus
            uce-2879, sequence.
ACCESSION   KCLJ01000116
VERSION     KCLJ01000116.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 506)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 506)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..506
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="13174cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>506
                     /note="ultra-conserved element locus uce-2879"
BASE COUNT          150 a          101 c           93 g          162 t
ORIGIN      
        1 acctaaaact gggaggattc aaaaagaaat tctctttcaa acctttccat atacagacca
       61 aactccttta tgatctagaa tagtctcagt tacacctaag agttggcatc tcacctcttg
      121 tttacaattt tatactaatc accttactga cctttcagta ttgaatttat ttgctgttgc
      181 agtgccctac tctctactgt ctgaatatta aatgtgtttg ttttcccaga gggctagaga
      241 acattggaca aaagggttca gcaggagaga gtgaaataaa aagaggttgt gagtctttaa
      301 ccttgagcct gaaatgaatg tgaaccaaac tccagatact tggcttagat gaagccaggt
      361 aaacattcga gtataagccc acacactacc aaccagaaca cagctcttgg tgcttaccag
      421 gctttgcaga ttttgcctag atggttgtac ttaggactga catttttctt ctgatgggtt
      481 gtagtatcta aaattctatt tctttt
//
LOCUS       KCLJ01000117             532 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 13277cal ultra-conserved element locus
            uce-2933, sequence.
ACCESSION   KCLJ01000117
VERSION     KCLJ01000117.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 532)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 532)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..532
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="13277cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>532
                     /note="ultra-conserved element locus uce-2933"
BASE COUNT          153 a          140 c          102 g          137 t
ORIGIN      
        1 aagccagagt gcacacagaa aatgttcagc ccttcagagg tacaaaaagc agtaatctta
       61 gcctgaaaca atggtactga actgatgcac tactcctctt ttctagatct acttttaaga
      121 tccctgtcaa aacagccctt caaacacatt tgattgggtt ggggctcatc acgctgtcac
      181 caactcactt ttcattaggc tgttgctctc tgttagccta gccaagcaga agaactcaaa
      241 cacatgcaca aattaaatcg acatccaaac tccaccaata tacaaagcaa tttaaatgat
      301 attcattaga gcgatgacaa gtcctgatga ggctttcagg agcggagtcc ttcagcttct
      361 gccgactcgg tttcatgggc actgaggcgg aactgcagtc actgtacctc cagtttagag
      421 aagccaagaa tgtgactctg cttcctgaca cacctacctc attcttctct gcacaggttt
      481 acagctgagc acaggctaca gctcttcctg ggctgtgcac tactctagca aa
//
LOCUS       KCLJ01000118             540 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 13386cal ultra-conserved element locus
            uce-5083, sequence.
ACCESSION   KCLJ01000118
VERSION     KCLJ01000118.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 540)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 540)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..540
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="13386cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>540
                     /note="ultra-conserved element locus uce-5083"
BASE COUNT          218 a          103 c          101 g          118 t
ORIGIN      
        1 aaccagaaac aaacaaacag atttataact gaagactgaa aggcaaacag caagcaagcc
       61 aagtactgaa cctaaatgta gcatttttat tgacttctta gaaaccaaat aacctggcat
      121 attagtgtgt gcattctgca acagacattc agccccattg tactacttag aagagaataa
      181 aaagaaaccc tactgtttga aatccagcgg aacatcccca caacagagca caactgttcc
      241 ctcatgcatg aatgggaagg agatgaaaga aaagatggac ttctgaggta cagcaaaaaa
      301 caaagacaac aaaagtgctg atcatgaggg aatgacacaa ctcattgctg caaaaaggat
      361 gagagaaagg agctcaaaca atggtgcaga cagctaagtg acatgtagaa gaattgaaaa
      421 atctacagaa gtgtcttttc tttccacact tgacgagaaa caattaaatg ttggtacatc
      481 tgtcataaaa aagataattg aaacctgtta ccatcattat agacggtaac ttaactacca
//
LOCUS       KCLJ01000119             527 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 13495cal ultra-conserved element locus
            uce-786, sequence.
ACCESSION   KCLJ01000119
VERSION     KCLJ01000119.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 527)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 527)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..527
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="13495cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>527
                     /note="ultra-conserved element locus uce-786"
BASE COUNT          174 a           92 c           77 g          184 t
ORIGIN      
        1 tccttgcttg ttgccctgta aatccaaaat tatttatttg gggaagtcct ataagccacg
       61 tgaattttct gggaatggtt cgaaatgttt ccagttaagc tctgttaaca tctccagaag
      121 aaaaactaat gtttctacca catattttat taagcccttt aggtcctttt acaagagagg
      181 aaataccaat taacgtataa tttagcagaa caaaatatta tcccatttca accagtaccc
      241 acttccttga agtttattca agcattaata accatttaat gcaatttaac tacactgagg
      301 tatccgttac attaatatca tatatccatc aggaaattag agttttgtct ctatgaattt
      361 tgtattacaa gaaagtcttc ataattttat tctgcacttt atggtggcta atttaagttt
      421 taaaatggtt cagataactt cccagtctct gcgctgtaat acgactaaca aattgttact
      481 gatgttaaaa gatcatgaac acatcattta ttaaagagag agaagtt
//
LOCUS       KCLJ01000120             695 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 13600cal ultra-conserved element locus
            uce-6530, sequence.
ACCESSION   KCLJ01000120
VERSION     KCLJ01000120.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 695)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 695)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..695
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="13600cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>695
                     /note="ultra-conserved element locus uce-6530"
BASE COUNT          234 a          154 c          127 g          180 t
ORIGIN      
        1 tttaatatgg aatgaaggca gtttggcagg atatgcacta cttcaggtaa gccagaataa
       61 acagtgcatt gattaaaagg agccccctat tctgcacctt cacctccttt gccacaaagg
      121 cctcactggt ttatttacct gtagagctgt tataatattt tgctttctaa agagatttgg
      181 aagccacctg ccgtaccttt ggcatttctt taacaacaaa gcactccagg ctcaagtgca
      241 agagcccatt gttctgctcc acaacatgga aaagaagatg aatccagaag cacaggatcc
      301 aaacagaaat tattattgat ttaatcacat aatcagcagc aaacacttca ggctaagata
      361 gcaaatccat aacagcctgc ccacataacc acccttacaa atttaccagc aaaccactgc
      421 gcacacttag caaacaagaa gagcaagggt caccttcact tggcggcaaa atattgacat
      481 tcctaaagct taaatatgtt ttgagttaag tgttatcaat cagtgataag agttgaatgt
      541 ctgttaaaca taactacatt ggcagaagga ttatagaatg ctttcttgcc ataatctaga
      601 agcatctttc agacaaaact ctgcttgaaa tcaattgtgc acaaggagct gcctgctgag
      661 acccattcag cgacatacaa aggaagagag agtct
//
LOCUS       KCLJ01000121             752 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 13711cal ultra-conserved element locus
            uce-665, sequence.
ACCESSION   KCLJ01000121
VERSION     KCLJ01000121.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 752)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 752)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..752
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="13711cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>752
                     /note="ultra-conserved element locus uce-665"
BASE COUNT          206 a          165 c          149 g          232 t
ORIGIN      
        1 atcacactgt ctattagctc actttctaac aaataggatt gagaaatata tggcaggaac
       61 tgcaacggca catttccaac taatggttaa aatgtcaggg cgataatgta caagtgcatc
      121 tgccctcaaa cacaaaatca aacgcagctt tacaagggct gtcgccattc cactttagtt
      181 aaagacttgc aagcttcctt cttccctttt gcagggctgc agtttggaag ctgctgcatc
      241 tcatcagggc tcggtttgcc agtgctgtac tgtacttcat taggcagctc tatttaatgg
      301 tttcaacaaa agccatcatt ttagcccaac tgccttgact aaattaaaat ttccaatctc
      361 tgttttagtg ttctgcaact gatgtataca taagcaaaac tggtcaacat ctgccagggg
      421 gttggccaaa agttctgtaa agatgtactt cacatttctg aagcatgtgc aaagtaacaa
      481 cgtacttatc ctcctgaggg ctctcatgat tttacttcac catttgttca gacacacttt
      541 agcagcatat aagccataca gttgattctc cccttggttg cagttttatc tgtagtgtca
      601 ttttgagtaa ttggggtatg gtagctgatc aactttcagg tttctcattg gcagaaaggg
      661 actgtattgg caccaagaaa gaatatgatg ggtcctctcg gtagtgtccc tcttttgcac
      721 ttggctaccc aaggccatta gaaaataagc tt
//
LOCUS       KCLJ01000122             738 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 13819cal ultra-conserved element locus
            uce-54, sequence.
ACCESSION   KCLJ01000122
VERSION     KCLJ01000122.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 738)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 738)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..738
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="13819cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>738
                     /note="ultra-conserved element locus uce-54"
BASE COUNT          199 a          158 c          131 g          250 t
ORIGIN      
        1 cgaggttggt gtataagcaa ttattagaga ttcctattag agttttccca agttccttat
       61 tgtagtaggc aaaaagcatg ttggatttag ctagattata agtatggtta tttactagca
      121 gaagctgatg tttttatctc ctctattttt acatttgaga ataaaatgca atttatattc
      181 tgggcatcat cctgtggaag ttctaaatca cttcatgagg ctttcagcct aggttatgtc
      241 atttatccat cagcgttcag tccatttaat ccagacctct cagctgtaca gacccagctc
      301 ctgttgtgag tgatcggcct gcttgagtgc tcccagcttc tcctgtcaca tcacatttgc
      361 ataaaagagg acggataacc aaatttgagc acacaaatga aaatgctaag cgctgaacct
      421 gtcacagttg ttgttcaact aattgtgaaa aatttgattt gctggctttt cactgtttat
      481 catgtggacc cccttctcaa atttgccttg gcttctgctt ctgtacatgt agcttttaaa
      541 ctctctacac aagcagccca ccctggggat tacttacctc tcctaccagc ttttaatgtt
      601 ggctcatctg cttgactaaa ttaggccacc atggcaaaca aacacataat taaaaacctg
      661 agaaagacaa ctacagttgc acttcttaaa ttgattttgc agtctattac tggtatatgc
      721 ctttgcattt tgccattt
//
LOCUS       KCLJ01000123             537 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 13932cal ultra-conserved element locus
            uce-6512, sequence.
ACCESSION   KCLJ01000123
VERSION     KCLJ01000123.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 537)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 537)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..537
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="13932cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>537
                     /note="ultra-conserved element locus uce-6512"
BASE COUNT          189 a          108 c          107 g          133 t
ORIGIN      
        1 tctctaagca atacacatta gttttcaaca ttttccacaa taattctcct ttgtcaaagc
       61 tatgtaacaa agtaaaggga catcaggaat gcaaatcaca aataaaagac aaacacagaa
      121 atgaggaatt tgacacagac atcaactgtt tttttcacat gcaaatgatt atggggctct
      181 ctgcccaacc caggggtgca gacgtgcaga gcaacggatc aaggcgtgca cttttcctct
      241 gcaggggaac catggagatg acagcacaga agagaaaagg cacttacagt tgttctagag
      301 aggcaagtcc tttaaatgct tgcctgtcaa ttgactggat ttcattcttg tacaaatagc
      361 tgaaacaaga aacaatcagt aatattagta cacaaacaag agctacatga aggtggaaaa
      421 gaagaaacac gtgaagacag ttcaactaca tattagaaaa atattctatc cttgtcattc
      481 atcccaaatg aagtctgggg tcttgaagac ccatggactt gggctttcca gtgctca
//
LOCUS       KCLJ01000124             689 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 14040cal ultra-conserved element locus
            uce-2845, sequence.
ACCESSION   KCLJ01000124
VERSION     KCLJ01000124.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 689)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 689)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..689
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="14040cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>689
                     /note="ultra-conserved element locus uce-2845"
BASE COUNT          219 a          120 c          143 g          207 t
ORIGIN      
        1 gaaaggtgaa aggagtaata tcttcctgaa tgtttaatta attacaattg ccagttcttt
       61 tgccaataac aaatggatgt ctatggcagt tatttctcat tttaaatacc taatctgata
      121 ttatatttca tctcaaagaa ctaaatgaga aaagatgctg taatctaatc ataccacaat
      181 ccaggtgaca tctgtactag gcagaacact gttgttattc tgctgtctag ttgctgttgc
      241 tgagaatgat gaagtagcga aattacattt tcccattatt atttccagac actctctggc
      301 aatggtttgt tgactctaat aaagcttcag acaaagctgt cagcagagga aacggcagaa
      361 ggggagcaag gaacagcctt cacagcaata catgaatcta aagtctccat gataggttga
      421 gcattttctg ataaaatgta agtgtgtttc agaatatatc acaaagctgc agccgaactc
      481 tagtgggatg gatgtattct atcgagtcag ttgcttaaga ctttgacaaa cataaacata
      541 ttacgaaaga ttaaagaggc agaagcctta cctgctatag tattgaggaa catcaagtat
      601 tcaaagttgg atatctcccg tctctgccag cgctgagtca tgttggagga tttataaagt
      661 tgtcggggtg tggccagaga gattctcct
//
LOCUS       KCLJ01000125             752 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 14251cal ultra-conserved element locus
            uce-5478, sequence.
ACCESSION   KCLJ01000125
VERSION     KCLJ01000125.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 752)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 752)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..752
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="14251cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>752
                     /note="ultra-conserved element locus uce-5478"
BASE COUNT          183 a          174 c          121 g          274 t
ORIGIN      
        1 aagtgctcct ctatattcag atgaatcata ttgcaaagaa ctgttgtcat aaacatgcac
       61 ctagtcatat aaaatctctt gtattacttc tttatgtcag cagataaata ccgctgctac
      121 gcaagtacac ttgggactgt agccgagtct gtccaaatgc catttcctga gagctcacct
      181 cagaacactt agggacagca agtcctgtct tttggcctgg tgctccaagt ctcttgcata
      241 tgcagctgct gtacttgatt tcttctcctg ctaacgattt tctttaatgt gacccatgtc
      301 ctgtgtcatt ttttctagtt catcatcacg ggagtaaaat gttacgttcg gaatcaaact
      361 cttcaattac cactcagcct actataggtt ggcaaacccc tctctttgtc tccttctcct
      421 cttcttctct taatttcctt cccgactttt agctatatgc ttcacccttc atatttagct
      481 taacatgttc ctacatgggc tggtgctttg caagctaatt tttttgacac gcttgaagag
      541 tgtttcaaaa acaattgcca ttcacactga cacagttaaa tgctaacatg tcttgcattt
      601 attcatgcag aacattctct tgtatgtgtg tttgtatgtg tgtgtgctta gccaccaatt
      661 acctcatcat agtttgggtt ttatgttcat cattgcatgt tgccaaacta cataacttca
      721 tagttttgaa taaatatatt tgctgctttt ct
//
LOCUS       KCLJ01000126             843 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 14360cal ultra-conserved element locus
            uce-6802, sequence.
ACCESSION   KCLJ01000126
VERSION     KCLJ01000126.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 843)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 843)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..843
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="14360cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>843
                     /note="ultra-conserved element locus uce-6802"
BASE COUNT          243 a          169 c          208 g          223 t
ORIGIN      
        1 gtcgtaggct gtgtttttga aagcctcagt gcccacccca gattaaagca gcatgttgct
       61 ggaatactgg gcctccaatg aagatgcctt tcaacaacgc aaaaccacta atgagaaaac
      121 atagacagaa agagagccag cccctgatgg cagtgtttct cagctttgtg tagattccag
      181 ggccatcgat ggcactggcc tgatggagca gcgggtcaga ggaaaatgaa atctttgctc
      241 tcagtggctc tgacatttgt ctggagttgg gacacaaaag gaaagaagga aagagaagag
      301 atcctggtta accacatacc atacatgcag atagtgtatt gcagttttct aggctaggga
      361 gacctcctat tccaagtgtt ccagtaatta acctcacttt cttggctggt gttaatttgt
      421 tccaagtatt tgggctttag atctaaccat gggaatctca ttccctgcag aagccttgcc
      481 aactattact agacatttta ccacacacat gcaggccaaa aaaagcaagg ctaattatgc
      541 tgtttttgca aagtgaagtg tatttgttat aagttcagcg tctcctaata aaggagtgga
      601 gcgggagaaa gcaaggcttt taaggtctgc cagtgggtgg cagggaggaa cgtggatctg
      661 ccttttgctg tgtggtacct gcacaaatcc ccagtgaggc tttaggagcc aaggtgtgag
      721 gatccacaac atgaaaccag agagtgctac cagggttttc tgctgtaaat aacctagctc
      781 aattatttga tacaaatggg agttctctaa gttttaaata ggggaattat tcaaaccaga
      841 tgt
//
LOCUS       KCLJ01000127             673 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 14470cal ultra-conserved element locus
            uce-388, sequence.
ACCESSION   KCLJ01000127
VERSION     KCLJ01000127.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 673)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 673)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..673
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="14470cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>673
                     /note="ultra-conserved element locus uce-388"
BASE COUNT          203 a          105 c          154 g          211 t
ORIGIN      
        1 acaactgcat cattggcatt aagtagaatt taccagctct tgtcaatcct ttgaacagct
       61 cctataatga aggggatata gctggagata atagtgaaaa gttataatac gcagggcttt
      121 gttcttttct ttggtgggga ctagaggaag aaagtctgtg tttggtgaag tgcagtctaa
      181 ttgtgccacg gtattaagac agtatatctt taaattttca tatgaaagta tgagctttgg
      241 tatgacagaa tatcaaagtg aaaattaatg tccgccactt gtatattgcc tagacgttac
      301 tttagagaga aaacaacagg agcgagacga agccatacat atgttaaatt cacatcagta
      361 ataaagatta agtagaagtt aatagcatcc cagtcatgct tgtggaggta atctcctttc
      421 tgaaaattca aaattagatt tggaggatcg aagcaaacag ggggtgagac tttggcgtaa
      481 tattttaatc aaattgtcat gaatgagtgg atacaattaa gaattctgtc agtcacagtg
      541 ctgagcccct tttgttagtc agctgttgtg agggatgcac tagggcatcg tgggtagaga
      601 ttaaacttga cctttcccag gatcttcatt tttgaccctc tggctaggct ttgcttgtca
      661 gatggctatt ttt
//
LOCUS       KCLJ01000128             635 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 14577cal ultra-conserved element locus
            uce-4653, sequence.
ACCESSION   KCLJ01000128
VERSION     KCLJ01000128.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 635)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 635)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..635
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="14577cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>635
                     /note="ultra-conserved element locus uce-4653"
BASE COUNT          185 a          190 c           96 g          164 t
ORIGIN      
        1 tttattgtag ggcagcctct ttacctgaca cactttcccc atcaaaacag caaatggctc
       61 atatccatct ctgcccctca gcaagacatg caaatgacca caaatcaact tccaactaat
      121 aaaatccgtc tggactcaac acatgtccct gtatcaccac aatggaagca gccacaatgc
      181 cagaacagct ctataaataa tgacagctct gctttccctc tgcatctccc tgcatacaaa
      241 atcagaatga aaacaactgt cctctcctca ccgcctctcc ctccttgcaa tatatacaat
      301 ataaggtgat aaggaaaatg cagggcttac acagatatca gaattcttca gacgtcctcc
      361 tttggctctt ttcagaagcc tgatccaggt ggccttcatt agccagacag ctcagttact
      421 gtccgcagct gcagcgcccg gcactgatct cataaaacat gtgcacactg agcactgcag
      481 aatcacagct cctttcctat ccatgctctg ccgtgagagc cttccttctc tttttcaagc
      541 ttccagcctc actgcttcca agtattctac tggaattaaa ttctcaaatt ttctcatgcc
      601 agtaggaaag aaaatccaaa ccacaacttc aatga
//
LOCUS       KCLJ01000129             487 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 14686cal ultra-conserved element locus
            uce-4096, sequence.
ACCESSION   KCLJ01000129
VERSION     KCLJ01000129.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 487)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 487)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..487
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="14686cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>487
                     /note="ultra-conserved element locus uce-4096"
BASE COUNT          140 a           84 c           84 g          179 t
ORIGIN      
        1 tccacagtgc aactctttca ccactctgac catttaataa gtgtctccag acttttcaga
       61 ggtcatttca acagcagaca gcttataaca aaaccattag cagtttggct agcttaagga
      121 aacctcttac tttccttttt tgtttattat cactgcatga atctgcagca tatgagagtt
      181 tataatttct caggcttgtt aaattcatgt taaaggtctg ttttcttgtt gaataaattt
      241 tgttcatata atgctgccta tttcatatac tgagtcttta atagcacctt tggtctatgc
      301 gcaactcaca gatcaaaaca gaggactaaa ataggggttg atgatgctat ttacatgtgt
      361 gattcctgct gtcttcttgt tagtagcttt aatataatag aagaccttgt ctgttttgta
      421 attaacacat ctttactgga gagatatttg gaagtgattg ctgtgaatat actggttagt
      481 aaaataa
//
LOCUS       KCLJ01000130             878 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 14788cal ultra-conserved element locus
            uce-708, sequence.
ACCESSION   KCLJ01000130
VERSION     KCLJ01000130.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 878)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 878)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..878
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="14788cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>878
                     /note="ultra-conserved element locus uce-708"
BASE COUNT          266 a          168 c          160 g          284 t
ORIGIN      
        1 tcgggattac cggggacttc aatcaacatt tttggccttt gtaaaggatc ttagccaaac
       61 atttggtgta gttaaactcc aactgatgcc acaacacaca gaaaaaagtg cagaactgat
      121 gcattgtgcc atctctggca gcattcgttc agtgtttgct gcgagtgggg aggaagaaag
      181 atacggaatg catggattga ttttcaaatt acctcaatat tttgaaaaca ttttcacctg
      241 catgctgaga atgctaagaa taggcaggaa ggcaattgtg catttgcaca gcctccactg
      301 cattcattta taaattacct catcactgac tgaaattaac actgattctt acaggcaatt
      361 tctcaatttc caatgctaat tacatttttt ttacttttaa attctgtacc acctgttttg
      421 ggcaagacat cttaggcagc gcgaccgcat ttaatcacaa ttttaattaa ccgccctgta
      481 gatgtgaaaa agaagcaatt ataatataga tgaatgatga tttttctgca ttaaattgtt
      541 ttgtttccct ggtatgttga ttgtaacaca gcacacaaat acagtaactg tacaattttt
      601 ttctattgta atttagtaat tgtttttgga aaaccagttt gggaatgagt gacttcatct
      661 gtttacaaat tgattgatac tgttaactca ctgattgctg cagcatacat tttgtattgc
      721 acagcctagc ataaaatata attaggcatg cacagacttt gcagcaccat tttggaatct
      781 gaaaatcaac tgtaaccgaa gtgtgttttc cttgagcatc ctcgtatcag ccgcggctga
      841 tgatacgata atcaacaaac aatgggcttt tcccatcc
//
LOCUS       KCLJ01000131             582 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 14900cal ultra-conserved element locus
            uce-4763, sequence.
ACCESSION   KCLJ01000131
VERSION     KCLJ01000131.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 582)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 582)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..582
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="14900cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>582
                     /note="ultra-conserved element locus uce-4763"
BASE COUNT          210 a           98 c           98 g          176 t
ORIGIN      
        1 gttatgttgc aactgtatca cttacagctt agttaggcaa ggatccaacc ctccaattat
       61 tcatcaagca aagtacttgt ctttgtggac atcaaaataa ccaaactatc aagttcaagc
      121 agacagtaat atctcataca gactaagtta aagccttaaa attgattata atgcctccgt
      181 gatagatata tatgtatgta tataaaaata atacaataat ttgcaagttt gtcaggcaat
      241 gaaaggtagt atattttgac acactaatcc agtaagtaat cagttttcta ataaacaatc
      301 agcagtgcac taatgtgtca tcagcacttc aggagctctg gagagtggat gatctgcaca
      361 tagacgttaa tgaatacccc aaaaatcatt aagtaatcaa tacttctgag ttattttcat
      421 tgagctgata ggtctgatac attaaagctg acattttaca tttgtcaaga tcacagtgca
      481 gtttttaaca gtggcatagg atgctaaaaa tattccatga aagacaatca aggaaataca
      541 acttaaaagt gttgacattt tagattggtc cagtaacctg ga
//
LOCUS       KCLJ01000132             575 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 15010cal ultra-conserved element locus
            uce-3061, sequence.
ACCESSION   KCLJ01000132
VERSION     KCLJ01000132.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 575)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 575)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..575
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="15010cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>575
                     /note="ultra-conserved element locus uce-3061"
BASE COUNT          160 a          116 c          124 g          175 t
ORIGIN      
        1 taacgcttcc tgtagtggcc agcttctaac cctgtgccag ccacgccctg gtgtagtact
       61 caaaatggcc ttatgggtta tccagagaaa tggcaggttg catcttcacc ctggaaggag
      121 ctcagagtaa aagtatcgag agttgcccaa gtgggcttga gcctatctta ctctcctgta
      181 ttttgttctc ttccaccagc tgatctacat gatggctact acatataact atgctgtttt
      241 gaagtttaag agtcgggaag attgctgcac taaattctaa attgtataag cccagtaaaa
      301 agctgcattg cgtagcttga aataccactg acaccctaga ctaaaagtct agctttttgg
      361 attttgttac agtaattgta aatagcttca gtaagcatcg tttagcttat cagattaatg
      421 aaatgatatg aactatgatg tggacgagat ctggctacat gttgagagga ttcagttact
      481 gtagggcttc tgacaaaggg ttttcatttc aggtctccac ttgatttcta acagtcatct
      541 caaacaaata ctggaacagt tcagggtcag atgca
//
LOCUS       KCLJ01000133             441 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 15119cal ultra-conserved element locus
            uce-4410, sequence.
ACCESSION   KCLJ01000133
VERSION     KCLJ01000133.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 441)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 441)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..441
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="15119cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>441
                     /note="ultra-conserved element locus uce-4410"
BASE COUNT          127 a           78 c           87 g          149 t
ORIGIN      
        1 ctcaacagtg cagaggcttt tgtagagcct tttgaacagt atactttcgt aaaatacaca
       61 tgcacataca catacacaga gaaaatatca tcataaacat ttccactgta atagtaacct
      121 ttccatagac tttccaactt gtctggtctt ccttgaaggt cgattgagtt ttcaactctg
      181 ttatctgcta ggtgtttgat ggagtggtcc agataacaga ggggagagca aaggaaaaag
      241 aattttttga agatcaaaag tgtctgttca ttttgttatc tgaccctatc tgttgtcata
      301 gtaacaggtt tcttttaaac tctgccatca gatgatttgt ctctatctgc tatgaattct
      361 gctttgactg agtagctgct ggtaaggtat aaagtgggta ctgtgttttc cagtttccta
      421 ctgcaatatt aagaagtgaa a
//
LOCUS       KCLJ01000134             753 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 15228cal ultra-conserved element locus
            uce-2476, sequence.
ACCESSION   KCLJ01000134
VERSION     KCLJ01000134.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 753)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 753)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..753
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="15228cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>753
                     /note="ultra-conserved element locus uce-2476"
BASE COUNT          231 a          161 c          130 g          231 t
ORIGIN      
        1 taaaggaata gtgtttggaa atcatgtggg tactaaacta tcggaataac aatgttgttt
       61 caatacaagt tgccctaaga aaatggaaga caagagtttt accttccact tctgacccca
      121 atatttcttc atcttcattg aacgtgttta acaacaatgc tgagaatcag attgttgagc
      181 aaagctattc agtggtcaaa tgtatgttgt cagagagttc atgaaaaagt cattagctct
      241 cctcccctcc tctttcactg tcaagcagaa tcatgtcata aatacagcca cttgtctagc
      301 aggatatcaa tctatccagg tatcacccac ttcctgtctc tggccatatg tttctgttat
      361 ttatgtcaag aaaatagcat ttacacaacc gctgctagtt gtttacagaa gtttaactcc
      421 tgtgatatgg tcccgcttgt gttgcatgct tttagcccat agataataca tgagattgta
      481 cattttaaaa tatgctacca catgcatgat agaataaaca cagacctgaa ctgacagcac
      541 catctgccaa acacagttga tgtcaaggga atggtctctg cacaatattc cactgctccc
      601 ccacgagata aggttactca tggtacaact acactaaatt ctacttgttc atttagtact
      661 caaattgtta aaattctcag aagcagaagg gtctcaggcc tcctaagaag agtgcaaatg
      721 gaccaattct cacataggtt tttcttgttc tta
//
LOCUS       KCLJ01000135             789 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 15336cal ultra-conserved element locus
            uce-1804, sequence.
ACCESSION   KCLJ01000135
VERSION     KCLJ01000135.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 789)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 789)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..789
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="15336cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>789
                     /note="ultra-conserved element locus uce-1804"
BASE COUNT          217 a          163 c          166 g          243 t
ORIGIN      
        1 gtgatgctct gcagccacac ctgagctgga gcagctccag cccaggcccc accaggccca
       61 ggctgccctt gtcctctgcc accgggcaca ttcccagagc cacatattta tttaatgtta
      121 atgcctcgtt gtcttgacat tcatcatgtg ctaagctggg aaagtaatta aagttaattt
      181 ctgcttgggg gaggatgagg aaagtcctca ctgtacattc ttattcatat ttctttcctg
      241 ttttgtgatt ctcaatcgga gttttctaat aacagatcat ttctttttgt ctaactttaa
      301 tctggccctg cttgacaagc accatccttt tcattgaagg gtaagaccac ttaaagaaag
      361 gccaataagc ccttgcactg ctcagctgac tggggtgatt tgtcaccctg tgcagtggtg
      421 gtcacaccaa tggatttatc tcaaggtaaa tggagatgct gagacctggg acctggagct
      481 ttgattaagg cccccttttt gtagtgttga tagatgttgc ttgtgtttat ctatttgaaa
      541 tgccactaaa tctgtgaata caatggaaaa agagagtagt ttgcagctga aaacatatta
      601 gtgatttatg tttcactaag aagcacaata gagagacaga ggctattaag aggagctatt
      661 ttcatgagaa atagttctgc tttaaaacat tatcaaccac accttgataa agacctacat
      721 gcatgcataa tggtgtttac tttagttgag tgcaatatac atttggaatg cacagcccca
      781 aattattaa
//
LOCUS       KCLJ01000136             372 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 15447cal ultra-conserved element locus
            uce-2678, sequence.
ACCESSION   KCLJ01000136
VERSION     KCLJ01000136.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 372)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 372)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..372
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="15447cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>372
                     /note="ultra-conserved element locus uce-2678"
BASE COUNT          133 a           41 c           79 g          119 t
ORIGIN      
        1 taatgtaaaa ttaattcctt taaaaagaaa aaaaccacaa catttttcta atgtgcatta
       61 agaatgttgg agagctcact gaagcatata cgttgagctt tcaggagcaa tctgtagtca
      121 ggcattttaa atgaaaattg atttgtgatt tacatggtca gtggaaagaa aattaactta
      181 tggaaggttg taatgaaata ttagacaagt aaaaaagtag atggtgatct agtggaacta
      241 aaagtcccat ctggaagaat tctgtgacat ttttttctgc atgagttgta atgttagtgg
      301 taattttatg ggactgaact gaaatgaaaa gggtgttatc acagattgcc tacaatatag
      361 gattgtgttc ag
//
LOCUS       KCLJ01000137             524 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 15549cal ultra-conserved element locus
            uce-5788, sequence.
ACCESSION   KCLJ01000137
VERSION     KCLJ01000137.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 524)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 524)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..524
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="15549cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>524
                     /note="ultra-conserved element locus uce-5788"
BASE COUNT          183 a           73 c           93 g          175 t
ORIGIN      
        1 cttaatatcc tcaatagtct gtaacttgtt tttgactcaa tacataaacc tgattaagtt
       61 atcttgacag aaatattttt atgatagcaa acaaacttag cagtaagcat ttgacagcat
      121 tatttattaa tatgataaat gaattgtgag atgtgtgatt gtgtgatgat gcattcattt
      181 agttgttcct ttttttcttt tactaatctc tgtcatgttg gatttataaa tggaactgag
      241 tgacctttga aactgtgatg gaaatgaaga gataaacaca acttgaaagg acaaaccaat
      301 taatataaat gtgttacaca taaagaactg atttcaatca attgctatct gtgtaaacct
      361 ttgggcactt agctgaatga aatagagcaa acagattacg tgacataggg acaaaacatt
      421 cttttattat ggagttggga tatcatccac aacaggaaga agaagtgtat gctacattgt
      481 ggtacaaagt ccattgagaa gttatagtcc tctcataatc agaa
//
LOCUS       KCLJ01000138             551 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 15655cal ultra-conserved element locus
            uce-5008, sequence.
ACCESSION   KCLJ01000138
VERSION     KCLJ01000138.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 551)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 551)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..551
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="15655cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>551
                     /note="ultra-conserved element locus uce-5008"
BASE COUNT          149 a          164 c          111 g          127 t
ORIGIN      
        1 ctaggagtgc acagcaagac aaacctctgt gccaagggtt ttctcccttt gtgcttgctc
       61 ccagggagcc tatctggcag agccaagtcc agtgccctcc ctcttgtcac ccttcctttc
      121 cccagcagca gcccccagcc cgacagagag accaggctgg atggagagcc tttctctcca
      181 gcgtgccgca ctatgacaga tgattgactc gaaacaatat ctaaggcgat caggataaag
      241 taccgaccat ttcaaggctc agcagaattc aaattctaat tagacttctc accacattcc
      301 aaataaaaat tgttcccctg atatcctttt tgcctatcag gtgtctctcc ctgatcgctg
      361 gaacaaaacg cataaagaaa gtgattaaag ccataacaaa ggcataaaat tgaaattatc
      421 gctggtatca catctgggag cagagtgtgt caccacactg cccccctccc ctcggagcgc
      481 tccctcccca aatagacaca cacatccccc catagttctt gcctcaaatg tgagtgatag
      541 gctgggggac a
//
LOCUS       KCLJ01000139             531 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 15762cal ultra-conserved element locus
            uce-2754, sequence.
ACCESSION   KCLJ01000139
VERSION     KCLJ01000139.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 531)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 531)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..531
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="15762cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>531
                     /note="ultra-conserved element locus uce-2754"
BASE COUNT          191 a           88 c           90 g          162 t
ORIGIN      
        1 atgaacatcc tacctcctgg aaagttgcac gttaaaatac atgtaattta atacagtaga
       61 aaagtaaata aaaaataaat caaaagagca gtataagaca gcattcaact ctttgcctct
      121 tgaaaattta aatgaatact ccttgagagc aaactacaaa atgctaacct tgaagtgttg
      181 agtggcagaa agaattatgg gttattgtac tgtcaaaatg ccagacagct gtatgttgag
      241 ttaccgtgtt atttagacaa tcagaaactt ggaagctaat gtgacatatt tttttcagtg
      301 tgaaagctcc tgacatgcgt catgataatt tctaaaggga caaaatgtta tataaaaaac
      361 atagtgcctt tatgaaactg cctaacaggt acaacactgt tgcaagtaga attcacactg
      421 aatactgtag ataagtagga ttgattcagg acattactaa aattgctatt acatcattct
      481 gttcccattt gttctataca ttttatcact gtcatacctg gagatactct c
//
LOCUS       KCLJ01000140             478 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 15871cal ultra-conserved element locus
            uce-3130, sequence.
ACCESSION   KCLJ01000140
VERSION     KCLJ01000140.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 478)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 478)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..478
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="15871cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>478
                     /note="ultra-conserved element locus uce-3130"
BASE COUNT          140 a          111 c          107 g          120 t
ORIGIN      
        1 gctgagctgc cagaggccag caagaaattt cctctcctct tatttcccat gctgccgtgc
       61 tccccagagg ccgcttgtca tcaccgccaa aaagaggaat ggagagggga ggaaggatga
      121 ggaaacaaga caaacctgct gtgcattccc tctgtgtccc accaacagtg tcaggcagga
      181 ggaaaattgt tccatcagtg agtgtgttag attcatgacc ccaccacaac cttgaattgg
      241 cctttagttg tcgctgatgg gagctgaaga acagctcctg tcgacatgat tgctgctctc
      301 caatgaatca gaacacacag ggcacagagc agcacattaa accagcaaca gaaatatatc
      361 actgcacttt tatatagatg tattgctttt gcccaggcac ataaatgatt gggctatcca
      421 cttatttttt ttccaaggac tataaattaa aaataagcta agggtttgga aattatgt
//
LOCUS       KCLJ01000141             431 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 15979cal ultra-conserved element locus
            uce-2303, sequence.
ACCESSION   KCLJ01000141
VERSION     KCLJ01000141.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 431)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 431)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..431
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="15979cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>431
                     /note="ultra-conserved element locus uce-2303"
BASE COUNT          129 a           90 c           79 g          133 t
ORIGIN      
        1 gcagatgaaa agagagatta ttccatattc aaaatcctgt gattatataa atctgttcca
       61 aagctccagg aaccttcctg cgttttccac atcctggttt ggtgcaagga acaggtccca
      121 ttccttcatg tggttcaaag tgcttttaat caaaattagt acaaaaaacc caactcactg
      181 gcaaagtaga aagaagggcc tgtctccttg ctgtatggta ttttgggaca tgctgaattt
      241 gggaaataga aaggtaaatt agcctcttgc cacgtgcata cttcccatct tctggaaagg
      301 tcagtgtcct ttttttgaag actctagaac catgcagatc tttattcact tagctgcttt
      361 gttttacaaa tgcaagtctg agaactctga cacttcttca ttaacacaaa aagaaactca
      421 attcatggtc t
//
LOCUS       KCLJ01000142             423 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 16084cal ultra-conserved element locus
            uce-4694, sequence.
ACCESSION   KCLJ01000142
VERSION     KCLJ01000142.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 423)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 423)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..423
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="16084cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>423
                     /note="ultra-conserved element locus uce-4694"
BASE COUNT          134 a           64 c           88 g          137 t
ORIGIN      
        1 tggcatttag attttgagag attaaaaaaa tgggaaacat tgaaaggatg agctaattaa
       61 tgtttcttta ggctatccaa ggtatactgt tgtgtttaat ttatgcctgt tattttatca
      121 tctcttactg acttctaggc ttcagtttgc actggctgta acaagcattt cattttacaa
      181 aaaatggttt tggtttcagt tactttttta ctgtacctga aaaagagaat gggatttgca
      241 aatgataaat ggggaagttg actagctaac taataaagat ttgtcttaat caagtatgat
      301 ttgtcagaac aggagcgcac tggggtcagg gcacacgcaa tgaataatac agcattcact
      361 ggagagaagg accaggcaaa aggcctcata aatatgctgc tattacccac tgctaattcg
      421 tat
//
LOCUS       KCLJ01000143             823 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 16189cal ultra-conserved element locus
            uce-1339, sequence.
ACCESSION   KCLJ01000143
VERSION     KCLJ01000143.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 823)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 823)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..823
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="16189cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>823
                     /note="ultra-conserved element locus uce-1339"
BASE COUNT          231 a          141 c          163 g          288 t
ORIGIN      
        1 gtatggctgt ctcagcacaa tactcaacat aactgcagaa ctgatgtggc tcaggcatcc
       61 tggttttaat tccttgagga tctggcaatt ggctcatgcg aagggtcacc atttgaggtc
      121 ctgccttact aattatgtgc tgcccaacaa ctaaatttgt aattgttttt ctttagtttg
      181 agcagggtct gaatttttgt ttttgtttcc ttttttgcca gcagacaagc ttgggtctgt
      241 aaagacaagc aagtacactg acaaaagttt accacttagt tttccaaaat gtaaaaacga
      301 aaaaagacaa aaaattagac aacaaaattt gcattgttca ttgtagcact attggtaata
      361 aaaaatgttt gtgcattttt atgtgaagat ccttctcgta tttcatttgg aaagatgagc
      421 aaggtttgct tccttcattt tacttcccct tctgtctttg aaaggcagtt ttcgccaagc
      481 ttaatgcaag aatatctgac tgtttagaag aaagatattg ccacagtctc tggttagttt
      541 ccagggttgt gtattactga gcttcatctt tccagaatga gcaaaacact gtccagtctt
      601 tgttacgatt ttgtaataaa tgtgtacatt ttttttaaat ttttggacat cacatgaata
      661 aaggtatgta tgtacgaatg tgtatatatt atatatatga catctatttt ggaaaatgtt
      721 tgccctgctg tacctcattt ttaggaggtg tgcatggatg caatatatga aaacgggaca
      781 ttctggaact gctggtcagg ggactacttt gtcgccctgt gca
//
LOCUS       KCLJ01000144             584 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 16297cal ultra-conserved element locus
            uce-6870, sequence.
ACCESSION   KCLJ01000144
VERSION     KCLJ01000144.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 584)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 584)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..584
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="16297cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>584
                     /note="ultra-conserved element locus uce-6870"
BASE COUNT          180 a           96 c          110 g          198 t
ORIGIN      
        1 ccatgttgct aatacagtaa agaattggaa ctttaatgtt tattattgtc ttatgttcat
       61 attaatctgg tttatgcata gtatccaaca aagtctaata agccagtaaa gaagaaggat
      121 ggataattag tttaagcagg taaatgctaa ttaggaaact cctgaaaggc atccattata
      181 cactagctta aaacaaattt tacagccctg gttagtggtg taatccaaat tctgtcaagg
      241 caactgcatt ttctgtaatt gagatgtgta tgtttgcttt gcataacaga tggctctgta
      301 tgcttagact gatagctagg aaaataataa ttgcattatt ctggccaaaa gaatattagc
      361 tcttgggttt tggccatttc agtcagtcct cctgccagca cagcatatgc acatatatgg
      421 attggatttt caaggaaatt gatgcatctg gaatagtgtg gccatctgaa atatcatctg
      481 ttcaagaaaa atttggcttt aaccctatgt tagtctgttg ttaaaagcat tttctgccac
      541 tgtctttcaa actatggagt tgataaatct ctccttgctc tgaa
//
LOCUS       KCLJ01000145             482 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 16405cal ultra-conserved element locus
            uce-4512, sequence.
ACCESSION   KCLJ01000145
VERSION     KCLJ01000145.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 482)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 482)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..482
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="16405cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>482
                     /note="ultra-conserved element locus uce-4512"
BASE COUNT          132 a          103 c           91 g          156 t
ORIGIN      
        1 atttgatgct actcctgata tcctctttat aggataatcc agcgttcact ggagtgctta
       61 tcacaacaag tagcagttgc agtatgctgc atcatttggc gcactctcag gaaaatggaa
      121 tgttgaagaa gcactaatct gattctccta caccagtact tacttgcctt ccttagtagt
      181 acgggaaagg ataatggttg ctgtaaatct gatctgaaaa ctgcatttca tttttctgct
      241 ttcaagctgc gagctatctg taagaaggta ttactcaatg ctttttacct tagcatatag
      301 cttacagtgc tataagcata catagcatat agcacagtca gacttgcttg tataacagga
      361 gctctacaaa cccactgaaa atgcattatt cctagtttag gctgcccacc tctggtttgg
      421 ctgatttgta aacacaaatt ttccctgatt tttggccacg tttcctttct gtggcaaaag
      481 ga
//
LOCUS       KCLJ01000146             749 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 16511cal ultra-conserved element locus
            uce-1157, sequence.
ACCESSION   KCLJ01000146
VERSION     KCLJ01000146.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 749)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 749)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..749
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="16511cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>749
                     /note="ultra-conserved element locus uce-1157"
BASE COUNT          208 a          128 c          153 g          260 t
ORIGIN      
        1 tttttcttga atttatttag tacagtttca aattgaaaat gcagagttta gtgccttatg
       61 ggggatgtgg atgctatgtt tttagtttga actatattgt gagttaagtg atctctgttt
      121 atcctactta ggagtatcag tttgctcttt ttaaataact cctggcaaag aaaaagaagg
      181 atataccatg tattttattg cttagtcttt tatagtaatt gtatagactg gctgcagagt
      241 cccagtaaaa cctaggagca gtggtatggc agaatttctc agtttgaagg gactctatct
      301 ttgacagttc tcctaaggta ggttattttg gagaaaacat atgtttccat tttctctccc
      361 tcggcttccc ttttagtccc caggctccac tagggtcaca gcaacattaa ggcttttgtc
      421 actgtgatta atagctcttt agatcatctt taattcactc actaatgact gagggtcttt
      481 ctgctctcca agtaatcgcg tgatgtatga gccgatagta caccttgtgg cagaggtgaa
      541 aatcattcag gcaatgcaaa tattgtcacg gggacaaatg ttttccctgt taataaaaat
      601 taatgaattc tacccaggag ctagttaaag aagctctggt gagagagatc caaacaccaa
      661 gttcttgctg cttggaacca tttattcagt cgttctagat atgtgaggat aataattatt
      721 agtatttctg catctgcata atagatgag
//
LOCUS       KCLJ01000147             809 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 16621cal ultra-conserved element locus
            uce-2367, sequence.
ACCESSION   KCLJ01000147
VERSION     KCLJ01000147.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 809)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 809)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..809
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="16621cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>809
                     /note="ultra-conserved element locus uce-2367"
BASE COUNT          268 a          143 c          142 g          256 t
ORIGIN      
        1 tgctactaat attgatttgt tatgattaat aaatatgatt ttatgcatta ctcatgtacc
       61 ttatctataa tactagagca gaagaaaatt gcctcttgct ctttattttt cattgactat
      121 ttttagtcaa tgataaataa agaactttaa cagcagtctg attacaggaa agacaggaca
      181 aaacagaaat gtagcagtaa tgaataacca tgcagcacgc tatgcacgcc attttaacat
      241 ttgtaatggt gctaatttcc tgaaaatatg cttccacatg agctctcaaa agacataaaa
      301 gcttggcatg taaagtaaat tgtttgtcac ttactgacga cctgccatat ttattgtcag
      361 gagaaatgga cattagttgg aaaagcagtt gttaaaggcc aaacaatttt taaagatggc
      421 aaagatgtgc aagggctttc ctttttctaa caatgagcca ccccttcaga catcaaaaga
      481 caagataata agacacttca agcacaattc aagattatat tcaacatcta aaggctcatc
      541 tcctgtcagt ttgcatttac tctcccaggg atgtgatgct tctatcatca ttctgtcaag
      601 aggagtctgg cagaaacgat gagggcccct catttcacac acttttttat caaatagccc
      661 atgctcattc tcattcagcc aaaatggagg gataatttga agaaggtcat gcacaagtac
      721 aaaaatcttg tgctgatttg tgtgattaga aggcattaaa attgcacgtt tatgttagtt
      781 ctgagatgtt ttgtcagttt atttagtaa
//
LOCUS       KCLJ01000148             569 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 16733cal ultra-conserved element locus
            uce-3246, sequence.
ACCESSION   KCLJ01000148
VERSION     KCLJ01000148.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 569)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 569)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..569
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="16733cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>569
                     /note="ultra-conserved element locus uce-3246"
BASE COUNT          187 a           87 c           80 g          215 t
ORIGIN      
        1 agtctttaaa tgtctttctg attgctggcc tctattaaaa acttcttaaa ataatagata
       61 ggtttaattc ctcaagccaa agaaaaattg tatcatctta agtattttcc atatttatta
      121 tattgatgag atttggctac tgagaaaatc tcttgtattg caagttttaa atgtaccagg
      181 ctaaggttta cttaattaga acctccaggc aataaaggag cccaaattct gtgaatctta
      241 atatgctaaa taatgcaaag cttcaactct tcaagcatga gacacacatc tggcagctta
      301 acatttaaat tacaccactt cagtagtaat tttcatgaag aaaagaatgg gaaatgtatt
      361 acaactaaat ttaatttctt tttagatttt tcatcctgtc taattgcagg cttttcctct
      421 tttatttatt tattttcata cagatgtact ttttattgat ctttaatttg agcagcttct
      481 tactgttaca gctattgaag aattacattg tgtttttact tagcaaaaat tgttcagaga
      541 aatctatgag gaattaaatt aatgagctc
//
LOCUS       KCLJ01000149             878 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 16843cal ultra-conserved element locus
            uce-865, sequence.
ACCESSION   KCLJ01000149
VERSION     KCLJ01000149.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 878)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 878)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..878
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="16843cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>878
                     /note="ultra-conserved element locus uce-865"
BASE COUNT          244 a          173 c          170 g          291 t
ORIGIN      
        1 agattgcatg tcagtgcagg tcacagttac aatgcagcag atctcacaaa ggtgtaaggt
       61 ctgataagaa gcgagtcttc tctacttgtt gtgtcaaatc accaatagtt tatctaaagg
      121 tctgtgccct tgaagcacaa aaatatattg tttttaagca taactggaaa tacctttcta
      181 tcaagaaaag ttgcctggtt atgtgacttt acatggtgca ttttttccag tcccagagat
      241 aattagcaca agggcgcttt gccaagctaa agctgagaga atatccttca cagccttcct
      301 gggcatttgt gtccttttcc aatttttatg ctgctgtcac tggactctgg catttcttac
      361 ctgattcatt tgctttctct ggtaatcata tgcaatgaag atatgcatgg ccaacattta
      421 aacaggctgc agatcaatta gtggtcttaa gtttatctga tttttatcaa agaagacaga
      481 gctttgggtc gattgtcaga gcctgtgtca agttgacctt ttcagagacg tctacattgc
      541 cagtcccttg ggcaacttgt tgtcccctgt tagtctctga atggcagaag tctgttctgc
      601 tcaagcacaa agtatacaca gatgtctata ttacattctt ataggtttga cagcaactgc
      661 atgttgtatc tataaactgt cctttagcag tgacacttcc tcaatgatga taagctaatt
      721 tatgcaacta aatctccttt gtgcagaaat gaaagctaat tgagtcatta caaagtaatt
      781 caggaaggaa taccttgtat aaattggctt actttataaa tccttctcaa gtggttttca
      841 tgcatcctaa gtggtactta agcagttttg ctgccatc
//
LOCUS       KCLJ01000150             317 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 16955cal ultra-conserved element locus
            uce-204, sequence.
ACCESSION   KCLJ01000150
VERSION     KCLJ01000150.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 317)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 317)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..317
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="16955cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>317
                     /note="ultra-conserved element locus uce-204"
BASE COUNT          100 a           84 c           51 g           82 t
ORIGIN      
        1 tcacaggcag actagtttcc acagcaatgc ctcagcttgg ataaggcagt cacattagtt
       61 tcaacttctc tttttccaca cctgcccttg aaaagcacct catctagtgt ctgtgaggct
      121 tctgcttctt gtttgacatc ccttatttac acagcaaaca aaatgttcct tttaacacac
      181 atcatgcaaa gtttattaat gaagaaaaca atcccagggg gtcaacccag gggacccttg
      241 aaacctgcca gcaaaaactc ttcaaacgct caacgcgaca gatcgtccaa aacgatattt
      301 cacacaatga agtaaaa
//
LOCUS       KCLJ01000151             647 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 17058cal ultra-conserved element locus
            uce-280, sequence.
ACCESSION   KCLJ01000151
VERSION     KCLJ01000151.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 647)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 647)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..647
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="17058cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>647
                     /note="ultra-conserved element locus uce-280"
BASE COUNT          213 a          109 c          101 g          224 t
ORIGIN      
        1 aaatgtaaag gacagtcatt ttagaaaaca gtaaattcat gtagcatgca ttaagtgcac
       61 gtatttcata agacctaggt taatacaact ggcatctagt ttaattaatc cttgttagtg
      121 taacaactaa tatccctccc tagcatgttt cctttaaaca ttagtatgtt aattaaatgt
      181 tgttttttta agggcctttg tacttcaata tggcattata tcatctaaaa ctattccaaa
      241 caactacctt atagagatgt ctccttacaa tatctggtct cttgcagaaa ttctgaagcc
      301 ttttaaaaag ctgttcaggt gtagaataca gatattcagc tgcaggaaaa acagatacat
      361 ttttaatgaa acaaaaacct caaagcacac actcgatatt agtcacttta ctaattaaaa
      421 atgcatattg ctctgtgccg cctcgtgttt tacattattt aagcatgatt ttataaggtt
      481 acctcagctc acaaggatgt ttaatgctaa ataagactgt gtagttgtgc tgtttagaca
      541 tctcctttgg gtgattaaaa tacattattc taatgtaaca caatgcatat gtgatacatt
      601 tagtgatgag atttttcgaa gaactggtac tacattagtg tgtatcc
//
LOCUS       KCLJ01000152             498 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 17164cal ultra-conserved element locus
            uce-7482, sequence.
ACCESSION   KCLJ01000152
VERSION     KCLJ01000152.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 498)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 498)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..498
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="17164cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>498
                     /note="ultra-conserved element locus uce-7482"
BASE COUNT          108 a          153 c          151 g           86 t
ORIGIN      
        1 agagctcagc tcttgcagga cgaggtgacg atgcccaggg gacatgctgg cagcagggac
       61 gtgccgcggc ccagcaggga aggcagaagg gagcaggatc catcctctgc cgcggcagga
      121 gtggcccaga ggggagccgg agcccccagc attcccctcc ctgcccctca ttcccagctc
      181 attaaggctc tcccattatt ctgacatttt gtgcgcgtca cgtagcggga agaagtaatt
      241 tacttagaag aaattaaaag ttcattttaa ttgagcgcac actgcagtat gcaaatgcgg
      301 gcgcattatg tacactgatg cggagacaaa ggctgtaatc aactgttaac cctttccgag
      361 ccagccccgc gctcctccgc agcgccggca ccgctccggc cactccggag accgagccgc
      421 gttggggatg cgccccttgc ccgcagctcc cgagcagggg caggacagac gctgcgtggg
      481 cagccaggca gggatgcc
//
LOCUS       KCLJ01000153             572 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 17270cal ultra-conserved element locus
            uce-6083, sequence.
ACCESSION   KCLJ01000153
VERSION     KCLJ01000153.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 572)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 572)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..572
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="17270cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>572
                     /note="ultra-conserved element locus uce-6083"
BASE COUNT          168 a          115 c          115 g          174 t
ORIGIN      
        1 aaggaaagtt ccttaaattg tgctcactgc ttataattgt tggacattaa gcaatgtatt
       61 gataagacca tttacccaca ggacccccat ccctgtgaca gatgcctctc cttccacctg
      121 cattgcttaa caaatttctt ctcaagaggg gaaatgaatt ctcaatagca acgtgcctag
      181 taattaccca cactgtaatt ctgatgtgca gtgctgtcac ccaccattag gtgggagtgg
      241 aaaaggcact gcattttgtt gatggttgaa catttgtttt cctcatcatt ttgacaccag
      301 aggtaattgc cattcctgaa atattctctt gctaccatta caaagcaact gttagggaca
      361 aactaattat gaagaatctt gctatgacag attaataggc caacagaggg gatttaggca
      421 actgagtagt aaaatctaac agctcccata taactgcttg aaacacatgc ttctctgtaa
      481 gccagcagat tttttcttag agatgggagg gagtagagtg tagaatgggt ttccaagctt
      541 gcttttattg agctttttat gtgccaaaat ga
//
LOCUS       KCLJ01000154             744 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 17478cal ultra-conserved element locus
            uce-2896, sequence.
ACCESSION   KCLJ01000154
VERSION     KCLJ01000154.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 744)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 744)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..744
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="17478cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>744
                     /note="ultra-conserved element locus uce-2896"
BASE COUNT          165 a          205 c          173 g          201 t
ORIGIN      
        1 ggggcctcta aaaagaaacc ctcttttcct gaggtccgaa cctccaagag ggagaatcaa
       61 actgctgggt ttctggttcc tggtagagag gtctcaacag ggcttgctaa ggagagccca
      121 gtggattatc cagtctcaag gacagattgc caggatgggc caggggtcac tagtctaaaa
      181 ctgagggaag tgtcagaggg ccagcagcta agttctcctg agagcacact gcccaggggc
      241 agggagcgga tcaccggcat cgcgtgtgtg ctagacagcc agcctggact ttgcccacta
      301 gaccccatca ggctcaggtc tcctacagct ataactgcct cggcacaggt ctcaggtgtg
      361 catggatacc catctcttat cttccccctt ctgtctcctg tctttgtgaa ccgcctcacg
      421 atcccatcac atttctttac gtccagcttc tggcctgtct cgtcctgtct gcacctgtct
      481 cgttccataa accatcccct caatggtgag acacttcttc aatctttttc tcagtctttt
      541 ttccatttcc tctgggtctt atgtctgaca gtccgttttg tagacctaag aattgtcatg
      601 attttagtga tttaggggct caaacctcaa tgctaaaagc tgatatgcta tgtaggtcac
      661 accctcctct tggagcatgt ttccagcaaa tgaaggtaca gcccaacatg ttctaccagg
      721 cagctcgtcc agaaaggttt gcat
//
LOCUS       KCLJ01000155             649 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 17592cal ultra-conserved element locus
            uce-8011, sequence.
ACCESSION   KCLJ01000155
VERSION     KCLJ01000155.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 649)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 649)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..649
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="17592cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>649
                     /note="ultra-conserved element locus uce-8011"
BASE COUNT          201 a          135 c          125 g          188 t
ORIGIN      
        1 aaaaagtact ggttaagcat ttcatacaca cctaatgttc tgtgttgtga acaaggtgga
       61 aagaagacac ttgcacttaa atcttgaagc atcccgtccc gatgaaccca gagaaactaa
      121 tttctgccat cagaaaagta ctccaccaga acaccaaata attatatgtg ctgctgaaaa
      181 ggaaacagca agcccagttc tggctgtatg tagtctctcg aggtacaata atataaacct
      241 gatcaattgc aattaaaatc tgaacagagg cttagaactt gaagtcttgg tgcattagtt
      301 cttgccaaaa gcagatgtga ttgtgagctg gaagcaattt ctcctggtaa tttgtgatga
      361 cactgggtag agcagcccca gagtccccaa agacaaactc atcagaggct ctaatgtatg
      421 catgacacat gaggtggctc ttttagagct caattaattg ggctgaacat taagacagca
      481 agttcaggac ttttttttcc cctccagagt tgtttttcct cattttacaa gcagtttttt
      541 cccttacctt ctgcaagcca cgtctcctgt aattggctca gatcttgaaa gagttctgca
      601 aaaagaaaat tttatctctt cataaaatag gttcttttcc ttaagagca
//
LOCUS       KCLJ01000156             585 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 17699cal ultra-conserved element locus
            uce-2596, sequence.
ACCESSION   KCLJ01000156
VERSION     KCLJ01000156.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 585)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 585)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..585
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="17699cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>585
                     /note="ultra-conserved element locus uce-2596"
BASE COUNT          190 a          136 c          146 g          113 t
ORIGIN      
        1 attctttgag cctatgtata gccagcaaac tctaaaaatc cccctggcta acaccattag
       61 aaagaacaac acattttttg ctgttctgtc agggtgatcc acacattttg aagaaaagtg
      121 cctacagtgg tagagtggga gagaagggga aaggaaggga aacaagaact gaatccaagg
      181 tggaggcaag cagcagtaca acagacagct ggtgtttggg tggtggtaaa tcaccctgaa
      241 atgagcctct tccctcagct caatgaggcc taaacaacaa aggaaggcac agcttgcagc
      301 cggacagcct gctagccaac cacagacaca catgacagct tcattcagga gcccggagtc
      361 aatacaaaag ctccgaaatc aatccgacat cctgcgacct caaacaatgc gccaaatctt
      421 ctcagaattg gagccccaaa tgagggggag cagcattcaa gggagatcaa aacgcagggc
      481 tggcattgaa agggactaaa aaggagaaga atgttcccag tttattaatg gtgaggtctg
      541 gccggctgca tcccagccac cataggttac gttcattaaa gggca
//
LOCUS       KCLJ01000157             575 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 17797cal ultra-conserved element locus
            uce-3887, sequence.
ACCESSION   KCLJ01000157
VERSION     KCLJ01000157.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 575)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 575)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..575
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="17797cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>575
                     /note="ultra-conserved element locus uce-3887"
BASE COUNT          175 a          106 c          117 g          177 t
ORIGIN      
        1 aactacagtt tgcatgtaaa tggattcaac tcatctttgt ttaacgttgc cttttatgtc
       61 gagtttcatg aattgctaag cctgacaagg ttcactggga gtcttttaac tcccacccac
      121 aagttctccc tggctgtcat gtgactggca gtacagaggg atcagcaatg gcatttatgg
      181 ggaaagcggg aagacaggtg tcagaacggt ccagcaggca aaccgaacga acactaatca
      241 gctctggtgt tcttttacaa tccatatcta attcacaagt ttcattcttt ctgaaaaaca
      301 attactaggt tttgaagttc attgtgcttt tactcaactg tctcttcaca ttaacgtaag
      361 tgggaacaag agagtcagca ggcaagggac tcttagagaa gatgaaggct ttattttaaa
      421 gtaatataat tacagatgag cataatgttt tacaataaat ttaaatgtat agttacatcc
      481 ttatgcgcta ggaaaatatt ggttggttgt ctcttgagct gaaactctgg tacatacaaa
      541 tgactttgct gagagaatct cattgcaaca tcaaa
//
LOCUS       KCLJ01000158             558 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 17906cal ultra-conserved element locus
            uce-4538, sequence.
ACCESSION   KCLJ01000158
VERSION     KCLJ01000158.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 558)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 558)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..558
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="17906cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>558
                     /note="ultra-conserved element locus uce-4538"
BASE COUNT          179 a          106 c          109 g          164 t
ORIGIN      
        1 tggaatgact agtgacaaga ctagaccact gcctttaagt tttaaaactc ttcagtctgt
       61 gaataaaaca gaaagtattg ctgataaagc atgcacaatt tagaagctct atgacaagca
      121 agaagtcagc ttacactgga aactctgaag acagtcaatt taaaggacaa aaaggttgtt
      181 gggcacagtt tttttctttt actgcataca gttccctgct atctaaaatt gtgatttatg
      241 cagtatttta atattttgct tattctttcc ccttgggtgc tctctgggca gcgataaaaa
      301 ggcgacgctg aaagagcacc attaatttgc tctgatgact ggccagataa ggggagataa
      361 tgggaaagat aagcggagaa gatataccat cagaaacccg attattacca ttaaaattcc
      421 agcccagcaa tctgcagaag cctgataatt ccttctccgt ttccaccact ttggatgata
      481 aggcaaaaaa tagtcactca gtgctccttg attagactgc ctggatttcc tgataataca
      541 gtgataaatt atgtattt
//
LOCUS       KCLJ01000159             721 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 18014cal ultra-conserved element locus
            uce-1915, sequence.
ACCESSION   KCLJ01000159
VERSION     KCLJ01000159.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 721)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 721)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..721
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="18014cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>721
                     /note="ultra-conserved element locus uce-1915"
BASE COUNT          196 a          142 c          164 g          219 t
ORIGIN      
        1 tgttactgca caggataaca gggaatcatc ataggaggac cagacagccc ataattaatt
       61 ctgcctgttt ataaatacac atatttatat tgctgatgta cgttccctgc acttgatgca
      121 tgtaatcctg cggggcaggg aagggagata ccaaggcctt aatttggcag ccatctgtgt
      181 gcctgctcat cagatgtttt taattctatg attctgtgta gccaatgagt ttatttccag
      241 tgttcctcac aggcatagct caggccaagt acaagttgaa taaccttcag gaaagctgtg
      301 ctgtccttct gtcggccgct gtctttgaaa attgcctgca gagttagtga gcaggaacag
      361 ttaagattta caaacaatga tgaagcttgt catgcatctt tcaccattca tcatctgggt
      421 gccgtggctg ggcggtgaag tgttcttcat aaaaaccagc tcagtgtgaa atacacctcg
      481 cagcaatgtt tactgctctg aaactcgtca gcagcccttt atagtaaatc cagattgcga
      541 tgtgacatta cagtatatca ttgcagagcg cgctggggtt tacactagga atgagtgcag
      601 ttcacaccag atgagatgtc gaaattgagt tatgtaggaa tttggctgtt atatggggat
      661 agcttttgtt ttctgaggac tgaaagttag ctttatatat atatataatc tacacatacc
      721 t
//
LOCUS       KCLJ01000160             586 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 18123cal ultra-conserved element locus
            uce-3757, sequence.
ACCESSION   KCLJ01000160
VERSION     KCLJ01000160.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 586)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 586)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..586
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="18123cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>586
                     /note="ultra-conserved element locus uce-3757"
BASE COUNT          189 a          109 c          102 g          186 t
ORIGIN      
        1 tataagcttt gaataataag agcctggttt ctacatttct ttcgttcatg atgtatcaat
       61 ccagtgtgaa aggaaacata aaaacagcac atatataaac caaatgtgca acagcaaaag
      121 ctttaacaaa ccttaattat tcaggtggtt aaggaacaag ctaaatagca gcactagtgc
      181 actgtaaatc cttgtggctg acacagaagt ggttatgaca gctttcacat tatctcattg
      241 cagtatcgag gcagtagtcg cagctggctc atatgtcaaa atgtgtcagg acttaaatgg
      301 taaaacagga gtgcaacagc aattggcttt tcaatcaata atgcaatcaa tatatttcac
      361 agatattttc ccatatctaa attactctgc agagatgagg tagcctgact gagtgtttat
      421 aaatcaataa aacacacagc taaaggacat ctgctcctgt tctttcactt caaggtgcag
      481 tttgcctttt atttccaact ctctcttatt taagaatgta cttttgagga tctttttgca
      541 cacaaatcag ttttgagttg cattctgact atagactatt tctgtt
//
LOCUS       KCLJ01000161             583 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 18231cal ultra-conserved element locus
            uce-1544, sequence.
ACCESSION   KCLJ01000161
VERSION     KCLJ01000161.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 583)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 583)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..583
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="18231cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>583
                     /note="ultra-conserved element locus uce-1544"
BASE COUNT          194 a          123 c          114 g          152 t
ORIGIN      
        1 tttttgaatt agaggtaaaa caatgtcaaa ttggagattt gaggtcaggg ttcggtttca
       61 gtttcttgtg gctgtacaca aagaatctaa ttacagtttt aaatgcccaa aatgccatgt
      121 ccaccaaaag cccgatgctc attagtacta gtaattaact ttacaactgt caacacaaac
      181 accacacagg ctgacagata gatagtagct ctgagggtgc taataaatcc ggaaataaca
      241 acttgacacg cagatgcaca aaaggatgca ggtgataaag aaatgttgac atcaaatcta
      301 attatcttgg aaacggccaa gtcctgcaca atccccagta atgcactgtt attgctggtg
      361 atgagcccca ctggaacggc tcttaaccac agcctacaac ggagctttta cagccccttg
      421 tcatatctag tgaggacaat atcaaaaagg aaattatgag tgtcatgacc cctccaagtc
      481 aaaaatctag tgatgaatat aggctcagca aggcatagca gattaccccc ttacgagttt
      541 taaagccagg atgatatatg acatttttat caggcacttt ctc
//
LOCUS       KCLJ01000162             687 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 18342cal ultra-conserved element locus
            uce-3276, sequence.
ACCESSION   KCLJ01000162
VERSION     KCLJ01000162.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 687)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 687)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..687
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="18342cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>687
                     /note="ultra-conserved element locus uce-3276"
BASE COUNT          249 a          106 c          114 g          218 t
ORIGIN      
        1 tcttgtatca aaccagtctg aaaatgctta ttgtcatcaa tagtaaaggg aaaatattgt
       61 ttcaatttaa ccaacacctt gttaacagag cagacattac gtgcatgttg actttctggg
      121 gaaagaatca attagaaaaa ataagtgatt aaagcataat acaaaattat tgcaggctta
      181 agcacaaaaa ttctattcaa aaagactgta gcagtattaa atgttttttg aacatcatct
      241 ctaccataaa gattgagtgt caggtacttt tttttacctc ctgcaggatt tcaagacttg
      301 attgcccaaa tgacagttta cttattttac tgtcacatac ttttgtgaaa tgccataaca
      361 agttgattac aggtttcaca ttttgcatag tgacaaaatc atctgtcata taatagtctg
      421 aagcctgaaa accatttaac tttgctactg aaaataatga tatttgaaac attaagtggg
      481 tttaaatgtg tacattttct aagtaagtct ttgttttaac tgaatgagaa gatccctttc
      541 aggcatgaat ttaagactta ccagacaaca actagctaga gggtgagata aattaggagg
      601 gatttcatga atgaaatgaa aaatagaaat tgaaagccta gatacatcat agctctacaa
      661 agatgaaaaa gaccctggct cctattt
//
LOCUS       KCLJ01000163             657 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 18452cal ultra-conserved element locus
            uce-6729, sequence.
ACCESSION   KCLJ01000163
VERSION     KCLJ01000163.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 657)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 657)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..657
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="18452cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>657
                     /note="ultra-conserved element locus uce-6729"
BASE COUNT          170 a          124 c          127 g          236 t
ORIGIN      
        1 ggttttgttt gtgctaggat tttcagctta aaataccaaa ctgagaagga tttgaaaggc
       61 taaaccacag tcccctcagg agcacaatag aatactgagt cccccaaata gtacctgcag
      121 atacaatctt ctttctgaat tgcaatttca ggtttatttt tatatcaatg tgattgaact
      181 agtgggttag tttttatgtt cagctgtctg ctagatttat actaatgtgg tatgtttccc
      241 tttctctctt cagcttaata accagtttgt attttgtttt gatttttcag tcccgtcttt
      301 taccttcaca ccaacaggta tatatttgca cttttccccc ttctttgtta cttaagcatg
      361 tttgtggtac tatttacata accaaccagc ccagctgttt cattaatgac aggtatcatt
      421 attagtagtg tgcatttgct ttgtggctga caatatttat ttgtgtgttc catgccagca
      481 tgccatttgt agcatgatcc tgtcagtttg tacaacctgg gtttcaaggg agtagtgaca
      541 tctagagaca aaaggtgctt ctggtggagg atgaatgact tgcacagccc agatgctgac
      601 ttgaaagaaa ttcagtgaga ttatagctgg tgaaatatcc tctgaatctg cactaat
//
LOCUS       KCLJ01000164             632 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 18562cal ultra-conserved element locus
            uce-2676, sequence.
ACCESSION   KCLJ01000164
VERSION     KCLJ01000164.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 632)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 632)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..632
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="18562cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>632
                     /note="ultra-conserved element locus uce-2676"
BASE COUNT          227 a          102 c          103 g          200 t
ORIGIN      
        1 ataatcttcc actaagactg aacccaaaag tgattaaaag aaggatttct gtaatttgtt
       61 tcgatatgta acaaactaat ttaagctaat gtaatgttta taaagttact tagataatga
      121 caccatgcat accattatag tcattaaaac acaatctatg ggttaaaaaa aaaacttaga
      181 tgattaacac aaaatcaagt tgatgtgaag gaacaattac ttttagaaaa aaaatcagga
      241 ggtcctaata ttctgtagaa tgagggagga tgcagctgta tgtcgacagc tttcatatcc
      301 tcatttgaat aatgtggcct gaatctgtca ctttattcat cctccttatg ctcagtgtac
      361 tctgcatcaa caacaaatta agttgtaaat aagagacaat catcactttt gtttttaagc
      421 agcttctgca tggagaattt caatgtactg tttctttttg acagaaagaa agggattcta
      481 cactctgctt atgtaagcac aaatatgagg aaaccaaccg aaatgaaaca atgagggagt
      541 acttgagaac tgctccaaaa tgttcttgga agtacatttc tatccccttt tttaatagga
      601 taatgaagac ctttactgta ataattatcc tt
//
LOCUS       KCLJ01000165             576 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 18673cal ultra-conserved element locus
            uce-4858, sequence.
ACCESSION   KCLJ01000165
VERSION     KCLJ01000165.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 576)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 576)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..576
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="18673cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>576
                     /note="ultra-conserved element locus uce-4858"
BASE COUNT          198 a          120 c          100 g          158 t
ORIGIN      
        1 atcttaaaga tgttatcagt ttaggtttta cagtttcact acctactgag attgcaaaca
       61 ttaaaaatac ttaatgcttg tttgtagttt ttaaagcttt aaacactctt tggctgaact
      121 gacttttgca aagggaaagc aatttggagg ttagcttgct tttattgcaa gtaaaccccc
      181 attaacaagc atccagaaca aaaggagtta atatttaatt aaaaccagct ctatccactg
      241 taacaatgac ctggagccaa acaaggcaga agatgtatga gtcattcttt ctgccagtga
      301 atgagacagc tgatctccga agcaattcct caagacaagc agtcagaact ggagttctgc
      361 ctccattcac aaaaacacag tccagcatga accatgtggc cccaaccaca agcttttcat
      421 gtcacaccct tccagaaagc tacagcaaag taaacttgaa ctttaggcat aaacacagtg
      481 atttcactgc tttgtctcaa gatgcagcac agacctgctg aggaacgtta tttaataaat
      541 gaaaagttaa gcaaactata aagggcttaa acttaa
//
LOCUS       KCLJ01000166             730 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 18784cal ultra-conserved element locus
            uce-6654, sequence.
ACCESSION   KCLJ01000166
VERSION     KCLJ01000166.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 730)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 730)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..730
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="18784cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>730
                     /note="ultra-conserved element locus uce-6654"
BASE COUNT          189 a          162 c          194 g          185 t
ORIGIN      
        1 cctgatatcc agcccctctt taaaccccag cagtggtcgc tgatcaaaaa ggccagcacg
       61 agctccatga agacacagaa gggaaaatat tcctttctct ccagtgttac tctttccctt
      121 tctgccatct catgactctc taaattcatg ggagctcttc ctcaaggtga aatgaaggct
      181 ctgggctgca tttggtagtg ccgacagcag gggatgaggg tcagggaggg ttaagcaggg
      241 agggggcagt gcaacaaggc ggcctgatct agtgattaaa caaagggatt cagccaacat
      301 gtgtaaaatt aagtgatcaa gagttgatta cagagtgcat tgattgtgta ctgatggatt
      361 aaacagagtc gtgctcggga tgcgattttc cgagccgggc acgaaaagca caggcaattg
      421 acgtgttggc cagaaggacc cgcttctccc aatccctggc ttttatacat tctccggata
      481 aatctgcaga gaggcccgtg gaattataat cgattatcca tttctcaaag tcacttaagg
      541 gccctgagct acaagctaaa gtgccggtgc tgcgaagagg cattgggtat gcgccggcat
      601 gtgcaggtgc tggcgcgagg ggaaaatgtg gcaatgaccc tgtgtgctgc aagctgatga
      661 atctattttc ttgtaggaaa tagttttgac agttcaatat ctgtgttttc gatatgtgcc
      721 ccacacatcc
//
LOCUS       KCLJ01000167             570 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 18896cal ultra-conserved element locus
            uce-1121, sequence.
ACCESSION   KCLJ01000167
VERSION     KCLJ01000167.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 570)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 570)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..570
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="18896cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>570
                     /note="ultra-conserved element locus uce-1121"
BASE COUNT          200 a          103 c          115 g          152 t
ORIGIN      
        1 ggtgaaggcc cggcctaaag acacctcagg ttctaaatgt gccgataaaa agattacaaa
       61 taatgttaaa taatatagtt tataacctca gggctgtttt caaacgcgta tagaccagtt
      121 gtcaacaggc agagaggaag ggaagggaaa ttataggctg cacaaaagag gaaagtaaaa
      181 gtgaaagctc cataaaagaa agtggaacta ttatggagca aaatgccaac tcattacaaa
      241 acagccaaat aagagagaaa tacagcttta cccgtaatag cagtttacaa gggaacattg
      301 tattgcaaca taacggtggt gctataattt gctctaacaa ctccaattat gccttttatt
      361 gatttggcaa cacatttaat aggagtagcc acacctcttg tgttacaaat cattaaaggt
      421 gttgaacagt gtaattttaa aattgtcctt ctcctacaga tgtcagtgtg acagcataat
      481 ttcccctgat ttctgctatg taaacagtgc gttacagtaa tttccccctt acaaagcaga
      541 aatgttgtca gcctgggttt gtgcagaaac
//
LOCUS       KCLJ01000168             758 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 19005cal ultra-conserved element locus
            uce-6195, sequence.
ACCESSION   KCLJ01000168
VERSION     KCLJ01000168.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 758)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 758)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..758
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="19005cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>758
                     /note="ultra-conserved element locus uce-6195"
BASE COUNT          242 a          118 c          156 g          242 t
ORIGIN      
        1 aagcaaatag tttacatttt gatgttttac tgaattcagc aagggtttat aggaatttct
       61 ggatccttag gcaattgaat aaagcaattt ttagaaggca aatcaatcca tcaatattac
      121 atggtcctat ttttcttgga gcatatttaa aattgtacat ttgaggtgtc aaggttcagg
      181 agtcaagtgc tacatgtgat aaattaagga aaggtcagag gctatgcaat gcagtttcag
      241 aagattgtct acctctgcct ttgcagctca ttcatgctga agtgatgcac tctgggaatt
      301 actaccaaac tctgctctgc aacatctgct ctccctaagt gagttagtgc acgtcagaca
      361 tctttatgtc agaatattgc agtgatggat gcagtcttca gaaaatgctg cataaaaatc
      421 tggtgtgccg ttctggccat taagtgaaat tactatttaa attaatggcg ctgtcacagt
      481 ttatctgtgc aaagaatgaa cgctgattag ggtattaagt aattagcaat ttatcacact
      541 ggaacaaggt tgataataat taaagaagta atggtttacc aaagaaacta gaaagggagt
      601 cacttcttgt tatgtgagtg aaatcttggc tgaaaaattt aattcagtta aacaaagatg
      661 aggttcacag tgaaagaata cagctttgtt tgtttcaata gaaaaacagt tcattatcaa
      721 aattttagtt tgcctgtcag aagtcccttg gggctgtc
//
LOCUS       KCLJ01000169             558 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 19118cal ultra-conserved element locus
            uce-6765, sequence.
ACCESSION   KCLJ01000169
VERSION     KCLJ01000169.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 558)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 558)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..558
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="19118cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>558
                     /note="ultra-conserved element locus uce-6765"
BASE COUNT          139 a          128 c          136 g          155 t
ORIGIN      
        1 tttttttctc cagaaagtgg ataacatcct acaaaaatcc atccgacttt atttaactgt
       61 aacatttatt aagagctgtg aaaaggtcag cagggactgt atgggctaaa ctccttcccc
      121 agccttgaat gcgacaagaa agcagatcct ttaagatgca actatcttaa gctcccctct
      181 taaactctta gtaattctag gttttggaga caaacgtcaa agcagagggc tcttcccttc
      241 attattcaag aaaaggcccc atcaatatta tctgtaataa gaatctgctg ttgacatggc
      301 tcaccccgca gttcctgttc caggcagtag tccctgtcaa taggattaaa gtggattgac
      361 aagtccactg gctgctgatt cattgctgcc atcaggctgc gggctgggaa aggcaagggc
      421 accaggagcc tgccctggcc agtggagctt tggtttcttg tgcctgactc cctggagctg
      481 gggagaggga aagcctggga gtggtttgca ctcctaccct gttgcttttg gctgagctgg
      541 gaagttttga ggtggttc
//
LOCUS       KCLJ01000170             521 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 19225cal ultra-conserved element locus
            uce-5733, sequence.
ACCESSION   KCLJ01000170
VERSION     KCLJ01000170.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 521)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 521)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..521
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="19225cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>521
                     /note="ultra-conserved element locus uce-5733"
BASE COUNT          136 a           96 c          101 g          188 t
ORIGIN      
        1 ggtttgagtg ttcctactac aaaatccaat aatccttttc atttcaatac catgcaaagc
       61 caaacttatt ttaagctttt ttggagagtg ttggtgaata aatcttttga tatatttgat
      121 attattaaac ttttcagatg ttggtattac tgaatgatgg agaaaagcat gggtttactg
      181 cattattaga aagaattaaa gtagaggcta tattttacag tgtcgtcttt caaatctagc
      241 catgctgtaa actgatgttt gctgtatgct cctcctgatt tgaaatagat gaaagagaat
      301 gaacctttaa tcaccatggt tcacactatg attgagaact cggcgctaag accgcaactg
      361 taccatcaag taaggtcttg gattccttag tgttttggtt gtcccctcct ttgctttggg
      421 tcatccatgc ttcccgaagc gctgcagtat cgttggcatg gcttcctcgt tgtttactat
      481 tcagtgtaca ccctctctgt catttaatta gctggtgctt t
//
LOCUS       KCLJ01000171             452 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 19337cal ultra-conserved element locus
            uce-6388, sequence.
ACCESSION   KCLJ01000171
VERSION     KCLJ01000171.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 452)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 452)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..452
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="19337cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>452
                     /note="ultra-conserved element locus uce-6388"
BASE COUNT          133 a           70 c           91 g          158 t
ORIGIN      
        1 aaatattgag tcattcattt cattacagaa gaacagtaaa atccacagca ggctctttca
       61 cttatttgtc tccaattttt ctttcaggct gaggtatgct ctggaacagt agcagaagta
      121 atccagtctg ttgtgaatgg tgcagatggt tgcatatttt gctttggtca tgtcaagctt
      181 ggtgagctcc caaattcgtt acagttaatt actatgtcag tctggtaatt acatgctgtc
      241 agctcctgga acaataaacc tggagtatat gaatagatta gaatttcttt ttaattagct
      301 ttgcaaactt accacggttt atttctacac tgtgattgtt ttaatttgaa aaggtaaaat
      361 gtagcatcag attagcttat tcaagagcaa gtttatgtag gtgcattgtg atgaaaatca
      421 aaagatcaga gatgcattaa tttgctgtgg gt
//
LOCUS       KCLJ01000172             534 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 19440cal ultra-conserved element locus
            uce-6005, sequence.
ACCESSION   KCLJ01000172
VERSION     KCLJ01000172.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 534)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 534)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..534
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="19440cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>534
                     /note="ultra-conserved element locus uce-6005"
BASE COUNT          177 a          108 c           71 g          178 t
ORIGIN      
        1 aagtcatatc tactcactaa aacaccactt gcaaactaca gctgggacca ttaaataaat
       61 tttgcatggt ctaattaact tggtttgcaa tctcaattac ttttcaccca agaaatcact
      121 tttgttcagt tttatgtgtg cctgtttctc ttttctaaaa aaaaatgatg taaggcatcc
      181 tcagacaagt gaactctaaa cttcatttgt ctttcagcag gcttgatggc tatgcattta
      241 aaaacccatt ctatcttata aactaaaaat taaatgtact cagctgtgat ggtcgtcatt
      301 gcatctgcta tttatatgct aataccctca ctgaaagatc ttgcaaatta ttccaccatg
      361 ccaatatctc atgtgcatct actcaaagcc aactaaatat ttttgaagat tttggttagg
      421 gaaccagaat atttattgct gtagaaccta gttccttaag cacatgcatt attcaaccat
      481 aacacaaaac atacttcagg catgttaaat gaaatttact ctatgtaaga aaac
//
LOCUS       KCLJ01000173             837 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 19551cal ultra-conserved element locus
            uce-385, sequence.
ACCESSION   KCLJ01000173
VERSION     KCLJ01000173.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 837)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 837)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..837
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="19551cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>837
                     /note="ultra-conserved element locus uce-385"
BASE COUNT          199 a          188 c          198 g          252 t
ORIGIN      
        1 ttttgctgca gtattgttga attttagtac tgttgattgt gcagactaat ggcttggctg
       61 gaatctgctc gtgcttctga ctgcagtgtg ctttgtctgc agaatcctac tttccgaaca
      121 atggaatagc tgttaagagc aggcaccaga ttgtgttgaa cttggctgaa ctagaaaaca
      181 attagatggc tacacgatct cctcacacac tgatacttgc agcttctgat gcatctaaca
      241 tctgttaaca ttatgctttt tttccctctg ccacctttaa ctttcttaga tcctagctac
      301 cgttctttcc actctggcgg atacggtcag gatgccttgg gtatggaccc tatgatggaa
      361 catgaaatgg gtggccacca ccctggtgct gactacccag ttgatggtct gccagatctt
      421 ggccatgccc aggaccttat ggatgggctg cctccaggtg acagtaatca gttggcctgg
      481 ttcgatactg acctgtaaat catcctttag gtaagaagct ccaaccttga attaaaaaca
      541 aaacaaaaac aactgacttg gttggcaggg agggattggc tcgactgggt cctggtgtgc
      601 cacaataata aataaatgct ctggaagcac actccaaact gacttctgct gtgaagtgtg
      661 taacgtcttg tgcactggct tcatgcagtc ttgatggcct tttacaactc ttttttctct
      721 ttgcagctgt atcatctgag tgaacttgca ttgattggcc tgtagagttg ctgagagggc
      781 tcgaggggtg ggctagtatc tcagaaagtg cctgacacac taaccaagct gagtttc
//
LOCUS       KCLJ01000174             747 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 19659cal ultra-conserved element locus
            uce-985, sequence.
ACCESSION   KCLJ01000174
VERSION     KCLJ01000174.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 747)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 747)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..747
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="19659cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>747
                     /note="ultra-conserved element locus uce-985"
BASE COUNT          239 a          141 c          168 g          199 t
ORIGIN      
        1 gtgaaactgg gaaaaaaatc tgtactctga attctttctg aatccacaga cagctgaacc
       61 acagcagaag cctcagtttg gagaagctaa aatagaagca cggggacaag agaaaaatct
      121 cctattgtaa cgattcttag gttgggggat aaacacagta ttgagcctga acagaggaca
      181 gtaatatagc acagttttta agaggctatg tataagtggt agaggatgaa actgatggtt
      241 gaagtctaaa taatactacg tatctcacaa cttgttgaaa agcaccattg ggggagattc
      301 acagctgctg aattttctgc agttaataga gtcctttgat tcacagcagt gccccttgca
      361 caaaaaatac tggcctttgt gtattaccag aaactaattt tctatttggc tgaaaaggga
      421 aaaatggggt tattgcttct ccctcctaca gagcttttca ttatgcctga tgcactcaac
      481 ttctaagctc ttctgagaaa aaaaaataac tgaagaggca agaggtagaa aaatgagctt
      541 gttagcacat tagaagtgaa gtatcttggt gggccctaga aattcccagt ggtgtgttaa
      601 cttatcactc tatgcatgct ggcactgata gtctcccaat tgatcactct cttttcgcac
      661 caaaggtgct gccaggaagc aaaggctgaa ggcccacagg agagcaggct gctatcaaaa
      721 caagctgttt ttgaaagtct gcttgaa
//
LOCUS       KCLJ01000175             698 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 19768cal ultra-conserved element locus
            uce-1644, sequence.
ACCESSION   KCLJ01000175
VERSION     KCLJ01000175.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 698)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 698)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..698
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="19768cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>698
                     /note="ultra-conserved element locus uce-1644"
BASE COUNT          227 a          116 c          138 g          217 t
ORIGIN      
        1 gcaggatggt actatttgaa actgtaaact tgctttgttc agaaggagtg agccttcagg
       61 aagattttct tgtctgtcgg tggccctacc catatttcag agagcactac ttttggggag
      121 tgaataaagt tacctgcaat tttttactcc aattagaaga ttttttggca tttattactt
      181 tttaacttgt tttgcatagt gctatctgtt tagctgggtc acagagaaag ccatatttcc
      241 tatttaaaat gatttgtgta tatcgcttga ccacctcaat ggtttagtga aagcaaaagg
      301 cagcgattaa acagtttcaa atgaggtgtc ctgctgattt tatcaagtct gctgaatgta
      361 taatgaaaaa ggagaagctg acagtgacac tgttgagaaa atacagacta ccttagctga
      421 accatttaag gaggtccaat tatagatcaa atttaaaggg ttgaaacagc agatttacag
      481 acacaaatca atgaacatgg taatcctgat gaatatgaca gatattcctg ttacagaata
      541 ttgctgtggt tgaggatcat tacctttaca gtaccaaata catcacatct aaaagcagta
      601 ggacactcta tgcacttgta ttgcaggcaa tgactattca tttacacctt ggagcaatac
      661 acaactaaat gctgaaactg agaataaaga agatttta
//
LOCUS       KCLJ01000176             513 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 19878cal ultra-conserved element locus
            uce-8005, sequence.
ACCESSION   KCLJ01000176
VERSION     KCLJ01000176.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 513)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 513)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..513
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="19878cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>513
                     /note="ultra-conserved element locus uce-8005"
BASE COUNT          162 a          105 c           96 g          150 t
ORIGIN      
        1 agccttcaaa ggcacagaca ggttctgact ggattaacat ttattgactg tttaagtttt
       61 ttgcttcagg acagagatac acgagtttaa ttgcagaggt tgttctgcca actgatcact
      121 agagtggcaa ccaaagcttt actaatcggt ccttcattaa agaaaagtct ctattacaaa
      181 acaaattaag catgctctga tcccaacccg caggtccaat ggcattacag caaagtttag
      241 gctgctagag cactgaaaaa cttattaagg tttagcgctg agatagcact tttgtattga
      301 ttttacaata cacaggtatt atgatttatg gagtgctagt gtcactctaa caagctgaag
      361 gacacacaat atcatctcca acatcattaa aattcagaag cctctagaac taactcatca
      421 accactgtgc attgtcacag gctatagagc tctactccag ttggaaaatg ccgtgagttt
      481 cccggacagt tgtcttctgg aataattaaa ttt
//
LOCUS       KCLJ01000177             628 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 19990cal ultra-conserved element locus
            uce-6480, sequence.
ACCESSION   KCLJ01000177
VERSION     KCLJ01000177.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 628)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 628)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..628
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="19990cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>628
                     /note="ultra-conserved element locus uce-6480"
BASE COUNT          194 a          122 c          116 g          196 t
ORIGIN      
        1 acgcctctaa aaacttaatt gtgctggtaa taaatccagt aatatctagg cttctatgac
       61 aatggtaatg aattaacaat attgaagatc aagtgaatcc attatgagct tttacttagc
      121 tgtggacctt acatgagata gacaagaaaa gggaaaaaat ttattcatta aacaattctt
      181 tcctgtttta aaatgagtaa aaacttttac atttaaaatc aataaagggt aaatgtgtat
      241 gtccagctgt ggatgcctct tatctgatca gaaaatcatc tcctccgcag tttcggtgtc
      301 agaactgctc atcttcgcaa gtctgctcac aggatggcac tttctatcag gtaagaggca
      361 ctcacgactg tacatactac agtcactaag gtcctgtcag cactccattg taattcagct
      421 tgtggagctt ttataattcc tcactacaaa gtgctaaaac tgtgtgagca aggtctcatt
      481 cgtgcagcac aaactttatt caaaggattt aggagtttgt cttcataggc caggttttgt
      541 ttgtggaaag ataccattca ccctatcagc ctcaaaggat tatctacctc ttgctatctc
      601 attactaagc agtattgggg caagggat
//
LOCUS       KCLJ01000178             360 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 20099cal ultra-conserved element locus
            uce-3629, sequence.
ACCESSION   KCLJ01000178
VERSION     KCLJ01000178.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 360)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 360)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..360
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="20099cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>360
                     /note="ultra-conserved element locus uce-3629"
BASE COUNT           99 a           57 c           82 g          122 t
ORIGIN      
        1 gtttaaatca tccttctaca tcctgtggac ttggagctgt cagagaggca aatttgaatg
       61 gaaaagcaaa aagtgtacca gctataatta tccataactt tgcagacctg ttttggttta
      121 taattacagg tcttaatgct agattatagc aagtcattta taaatagtca gaacagaggg
      181 gcttgttttt aacctgtgga ttgctgtggg ctgtgtgatt tgacgggatt ttgcctgtgt
      241 gtgtatgggg tgagctgtgc aatgattgat gaatccctta attaactccc aacaagttaa
      301 gatttatggc cattttctcc tgacacatct gtgtttgaca cttttgaaga catggataag
//
LOCUS       KCLJ01000179             709 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 20196cal ultra-conserved element locus
            uce-5327, sequence.
ACCESSION   KCLJ01000179
VERSION     KCLJ01000179.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 709)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 709)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..709
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="20196cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>709
                     /note="ultra-conserved element locus uce-5327"
BASE COUNT          241 a          155 c          101 g          212 t
ORIGIN      
        1 acattatatc actccatttt gtatgatcat tagtctctac tcgtaagagg accctggact
       61 caggtaatat aaataatgaa ctgcctttta ttttgtgaag agagttagag gggagggcag
      121 aaccgtgctc tcttgcaaca gtcaaggcaa ccatatagta caaacaggtc cacctctgat
      181 gagttagttg gtgttagtcc ccttaactag acaatcacaa atacccactc caaatcccag
      241 actctactgt agttacagta acactagaaa aaaaaatcac ttttgttcca attctaaaat
      301 tgctgtcaag actccagaga ctataaacaa catctttcac tgctctgacc cccatgcaat
      361 tttaaatccc ccaacctttc tgagcactgt tggtgagcag ccccattaca tcttaatgac
      421 tgtcattaat ttctaaagag tgttaatttc agatttttaa tcacccctta actattcaat
      481 taaatttcaa taaaatgtta agtacttaca agtcttctca tttttcctaa aatacttact
      541 acattaacat gactgaagtc cagtggtaaa aatgaatgaa attaaatgat acagcattgc
      601 cacaacagct gacaacaaaa attctgcaaa ctacaaactt aatcatttaa acccttgcaa
      661 tattattagc acactttggg gagctttcag gaagacccta gttaaatca
//
LOCUS       KCLJ01000180             693 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 20308cal ultra-conserved element locus
            uce-343, sequence.
ACCESSION   KCLJ01000180
VERSION     KCLJ01000180.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 693)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 693)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..693
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="20308cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>693
                     /note="ultra-conserved element locus uce-343"
BASE COUNT          229 a          137 c          147 g          180 t
ORIGIN      
        1 aaaaatgaaa gaaaaacgtt cctctagatg tattatgcct ttgggctccg tgtgagggaa
       61 gaaaaaagac agagaaagct actgtgaagg tcacagagtg aaagaacttc ctcagggcac
      121 agaataaatt aaatcccaag gaaaaaataa aatgtgattt ccagagtgtg aggcacaaac
      181 tcaaaatgac aatgattgac agccaaacta tatccgtgca atatcgaaga ctgcacgttc
      241 tcatttacct cagtgtagcc agcaagcgcc cattaaacat ccgtctgatg cccaaattaa
      301 ccttcttggc aaactgaaag aggcacaaac tatcataatc aacctttcat tatcacagca
      361 gcctctagtt aaagggtcag aataattgtg ccatcagagc cctgattgtt ttcaatcaac
      421 agacgactgg agtgacagct cagtgatgga gtagtttgat gaaaccgcac caggcctaat
      481 cagagcagat gaaaggaagg catgattggt gcaaatgaac agtcgtgcct ctctttttca
      541 tttacaatct gaaattactc ttgaatttac ggggtttttt ctcccttatg agtacctctg
      601 aaagaatgtt tgacttatta tgggttctga cagtgcagag ttataaaaca caggtagggt
      661 tttcagccca ggctttaagt gggtattcag cat
//
LOCUS       KCLJ01000181             747 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 20419cal ultra-conserved element locus
            uce-6657, sequence.
ACCESSION   KCLJ01000181
VERSION     KCLJ01000181.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 747)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 747)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..747
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="20419cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>747
                     /note="ultra-conserved element locus uce-6657"
BASE COUNT          269 a          107 c          118 g          253 t
ORIGIN      
        1 tcccagaaaa gtatcatatc ataacaataa tacaattact cttcatttca atccttaagc
       61 actactagtt aaataataaa taagagttac gattgatcta ttgttaaaat ggctagtaaa
      121 tggtcttttt attccaatta acaaatcatc tgctaaatct atgaatctta atattcaggt
      181 ctattcactt caattcatac aatttatctg caaatagttg ttgggctttt gattctaaat
      241 ataattagct gataattttg cttggctgaa ttacttttct ggagggcctg ctaaggctct
      301 cagtcgcatt atctagcaat aatgaatctg ataggtgaaa ttttttactg taatgaggat
      361 gagacacagt tgtgacacct gagtctagta ataacagaag actgctaatt atcgacagca
      421 cttttttgtg tgatgcacag agaaaaaaaa tccctcatta ttaaaaaata aaaagttaca
      481 attataagtg acatcggagg agagtaaata aaatggagtg attaaaacat tgctgcttta
      541 agggtgtttt taattaagtg gaaatgctaa tgttgtcata cttagcagat gggattaaaa
      601 ttagttattg taagtaactc atattttatg ttatggtttc cacagcatgt ctacaagatc
      661 taagaaagtg atacattcca taagacattt aaaaaatgaa attctcatag tctttacagc
      721 tcataataat gaacatcatg aataaac
//
LOCUS       KCLJ01000182             596 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 20529cal ultra-conserved element locus
            uce-5489, sequence.
ACCESSION   KCLJ01000182
VERSION     KCLJ01000182.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 596)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 596)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..596
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="20529cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>596
                     /note="ultra-conserved element locus uce-5489"
BASE COUNT          183 a          135 c           77 g          201 t
ORIGIN      
        1 tttaaattct taatagaatt cttcttttct tctaagaata aaatactctt tttgaagaat
       61 cagcaacatc cactgcatta taatacatac ctaggaacac ctagaaacac cacactgcat
      121 tttctgtcca tggcatagat gagcctactc tccatcatac ttttcctgta caaggcattt
      181 catggttctc tttaccctta ctgtcaatgg ttgctctctt gcatcaattt catttagaat
      241 tatactatag atcaatgcag ttcaagacca gtgtggctgc tgtgaatggt tgactgcaca
      301 tatattcatt taatatcaca ctatgacatg tattggccag ctgcatttcc tcttcacttc
      361 agcagttaat ttcatcaata acttatctca tagcctgttt cccttttatc cagaaaaaag
      421 gactgctttc tgccaagtca gctttcaata gtgatcacaa aagcaaaacc gaaacaatac
      481 aatcctcccc tcattgcagt agatttgact aagtaatttt aactagtctc taatttaacg
      541 gcttaactaa gctagattaa atatgtaatt agaaagtata gctcttcacc cctacc
//
LOCUS       KCLJ01000183             401 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 20637cal ultra-conserved element locus
            uce-2423, sequence.
ACCESSION   KCLJ01000183
VERSION     KCLJ01000183.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 401)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 401)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..401
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="20637cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>401
                     /note="ultra-conserved element locus uce-2423"
BASE COUNT          141 a           57 c           65 g          138 t
ORIGIN      
        1 aacaaccttt attgtattgt tgtaaatttt gacatggtac aacaatttga ttccttaaaa
       61 attaattgcc tagaagtgtg tttaagtaat attgattatg ttggtgcttt gtgttgatct
      121 gtgatactta acccagcatt taaaatatct tttttccatt ttacatttgt gatgcaagaa
      181 taaaagcaaa gtacaaaaca aataggcact tgaattctaa tagcaataag caataaatgt
      241 caggcatctg gaaattatgg ttgcaatttc atcagagtac actttgttct attatgcctg
      301 catgaatttt gctacaggca aaatctatta cagataacag ttaagaacct ttctaatcta
      361 cacagatagt catggaaaaa tgctagaaaa cgaaatgttg g
//
LOCUS       KCLJ01000184             755 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 20739cal ultra-conserved element locus
            uce-1004, sequence.
ACCESSION   KCLJ01000184
VERSION     KCLJ01000184.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 755)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 755)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..755
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="20739cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>755
                     /note="ultra-conserved element locus uce-1004"
BASE COUNT          206 a          117 c          141 g          291 t
ORIGIN      
        1 gtttattgtt tctctttttt aatggagttg ctaaaaaagt tcttaataat tggagaaatt
       61 agctttagtg gaacatgcgc tattcagtat gggagttttt tgatactggc aagccttttg
      121 ttagttccaa ttttgcaaat ttgaagatcc cttttcaaga ggtatctatt tgacgaatgt
      181 gcagtttttc agcatgtact ttctgtcttg tatcacagtg ttttagaaga atctatgttt
      241 tacttattca ctaggctttc aatagagaat cacattaatc cttttaagct ccttattcta
      301 atgatttatt ttgttgaaaa ccgtagtgat cctcctttga attttaatga ttgctggcta
      361 ttcaaggatt cattgttttg acttcctgtc cttacctttg tttcttacat gtctgtaggg
      421 aacacctgtc taatactgta tctggcctta gttctcactg gcttaccata ttcactcaag
      481 cctatcttaa ggcgttaagt tgaaatgcta gctactcatc catgaaaata aatgtaggat
      541 atttacaaag ataggcagat agacagcaga gggatggctg aatgtttttt gatgtaaata
      601 ttattttcag gtgattgttg caaaatttgc tcaatatcta taggagattt atatttcaaa
      661 atttttgaag caaatgcagt atgccaacag tagtcaggat ttggcatcag ctgctgaatt
      721 taggtcatgg cactggctta aattggattt cagtt
//
LOCUS       KCLJ01000185             606 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 20851cal ultra-conserved element locus
            uce-4945, sequence.
ACCESSION   KCLJ01000185
VERSION     KCLJ01000185.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 606)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 606)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..606
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="20851cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>606
                     /note="ultra-conserved element locus uce-4945"
BASE COUNT          170 a          100 c          131 g          205 t
ORIGIN      
        1 tttaagttct tctgaggaga gcagagacat tgaggcataa agacatgaga acagatggga
       61 catgttcaag agtcagcagt gtctgggtac atcttgccct ccccagggaa ccactgaata
      121 tttctggaaa tatagcttgt cttacatggc ataaatgttc tgtgttagca caatgcttta
      181 tatatttcat actgatcttg gacagtactg tgggggtaaa aaactgaata atatctattt
      241 tttttaaaca gaaggccatc attagccatg tctcacctga catcctttat ctgttcagag
      301 ttcaagcagt ttgccgaaat gaaatgcgta gtgactttag ccagactatg ctctttcaag
      361 gttttttaca ttgaactatt tgcagagtgc agtgtgaagt tatttcagaa gatatttgaa
      421 tgtagacaat gctaatttca tattttgatc tgaatctcat ttccagtggg gaggtttgcc
      481 caggttttgt taggggataa tttagttttc ttggtactag ttttctgaaa caaattcatc
      541 agagactgct tatgcatcag aggcacaggt ctaacagaat gtgagtctga tctgtgtctg
      601 ttttat
//
LOCUS       KCLJ01000186             564 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 20959cal ultra-conserved element locus
            uce-885, sequence.
ACCESSION   KCLJ01000186
VERSION     KCLJ01000186.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 564)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 564)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..564
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="20959cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>564
                     /note="ultra-conserved element locus uce-885"
BASE COUNT          158 a          135 c          105 g          166 t
ORIGIN      
        1 cacagcagac cagggactgc accagaaccc ttgcagggag cagaatctag gactgcccat
       61 gctacctgag caaccaggtc aaacatgtcc ccagtaatga agatctattc attactataa
      121 catgcacagc actgtagatc actttcatgg tctccaaaga agctgagcag ttatcagtaa
      181 cgttcaaaaa tccactggaa agtcattcat ttcactttat agtcctaatt agccatttgt
      241 atagttctat aattaaatat gctcctttct catcaagttt ttcactttag taatgatacc
      301 actgtgccac aaacaggccc catgctgttt ggtttgggac ttattcatag cttttaattg
      361 gtcacccagt ggttagccaa taaccccttc tatgggaagc aacactccga atgctgttaa
      421 tgggctagag gcatagtgat tgcctcctgg tacccagcag tactgggaat aaagcaattt
      481 cctccactgt gttgtgtgcc caatagctaa tcctctccac tcctgaaatg tacactattt
      541 ggttataagt atttgtactg gctt
//
LOCUS       KCLJ01000187             634 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 21068cal ultra-conserved element locus
            uce-3569, sequence.
ACCESSION   KCLJ01000187
VERSION     KCLJ01000187.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 634)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 634)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..634
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="21068cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>634
                     /note="ultra-conserved element locus uce-3569"
BASE COUNT          189 a          104 c          128 g          213 t
ORIGIN      
        1 atatctttga agaattactt ccagtactac cttaggaagg ataccgggga agcatattat
       61 tctgcgtaga tgaattgcct gtctacatat tttcctttgg agctcttgga ttatgttttg
      121 taaatcagtt agcttcctag ccagagatta aggtaaattc tgctaaggac taaaagttga
      181 cttagagcat taagaaggat taatgtttag ctgtggtgaa gctgaagtac taggttagca
      241 tgtttacgca gtgctgtaga tcacaattaa tccaaaatta gtataaaaga tcaacagcaa
      301 ctgctctcgc atgccagctt ggcttagtcc taaaatcaag acttactttg ggggcaatct
      361 gtgtgcaaag ttgccgtgca tgtgtcctaa taggtttaaa gctttcagag gaatctatgc
      421 attttaaatg tttagcttct ttgccctctg ctttgagaaa ataagtgtag aagtcagtac
      481 tcaagatgct tctgctttct atctgtgtca cagatctgtc agaatagatt ggtgctagca
      541 atgaacaaaa gcaaatacaa tttcctgcct ttttttaaaa tatgtgcttt catttgtcat
      601 tggtgattaa taaaaataac ttttctggta gaaa
//
LOCUS       KCLJ01000188             658 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 21177cal ultra-conserved element locus
            uce-2895, sequence.
ACCESSION   KCLJ01000188
VERSION     KCLJ01000188.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 658)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 658)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..658
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="21177cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>658
                     /note="ultra-conserved element locus uce-2895"
BASE COUNT          214 a          102 c          119 g          223 t
ORIGIN      
        1 aatcattatt tgctcttttg taaagcattt ttaaactagg aaaagctttg ttagaaagtc
       61 ctcatacaat gataaaaaat gggaaatata atctaggtat ttctttgttt tattgctaat
      121 gcaaatgcat ttcaaaatca aagtacttgt tagaatccac atctttacac tgctactgag
      181 attgtgtttt gatttctttg gcatgatccc tgattgctgt aagaagaatc agttcagtat
      241 ttttgttctt agattccccc tcctttgtct tgcagctact tgtggcagat tccattaaca
      301 attgcagtag gaaatacgag ccacatctca tcagaggcaa ttatatgggt gtctaacaaa
      361 tcaggtaaaa ataaactttc ctcccagtgg aatctcataa agcatacttg tgttttcctc
      421 aaatgtatct ttggaattga tcctagataa ttgtttagtt gctctgcacc cagttttaac
      481 tgcttaaaat ggattgcaga gctgggaagg gagggaggag gatgaaggat aagcaacaat
      541 ctagatttat aatattgcag aatttagaca gtataacgta aagcttttaa aaagaaacgt
      601 tatatttggc aaaacatata aaatcaaatg caattcactt tattgatggg tgaaagtt
//
LOCUS       KCLJ01000189             538 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 21291cal ultra-conserved element locus
            uce-1709, sequence.
ACCESSION   KCLJ01000189
VERSION     KCLJ01000189.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 538)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 538)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..538
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="21291cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>538
                     /note="ultra-conserved element locus uce-1709"
BASE COUNT          176 a           89 c           95 g          178 t
ORIGIN      
        1 gctaaatata ctctttttga gaccagatgt attaggttat gtatcttgaa atgagctgca
       61 gaacctgatc agaatctggc ccattgtaag taatgtttga taaatctcca aatctttcta
      121 tacagccatc tcagtaacca gatgttgatt gtgtacacat tgttttgtgt tgcttgcata
      181 aacattataa tcacatatag acaacagcag agctacaata tttagaaaac atttttcaca
      241 cctccttatt aagcaagact atgaaaatta tgactcatca ctgcaccatt gtttttgcct
      301 gttttcttgt gctggttgaa tagtcataga cagctggtat taatacaata ggtagtgctt
      361 agggaattaa tgggtgatgt ataatacacc acaaaggtat ctgtcatctg aaacaataag
      421 cacaatgatg taagatgtat atatttgaaa attgtgctca gatgaaattt tcttgagtac
      481 aaagacatac cttgactgcg atgcaaaatt agtttttaac aattgcgaga agtctgcc
//
LOCUS       KCLJ01000190             709 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 21394cal ultra-conserved element locus
            uce-4023, sequence.
ACCESSION   KCLJ01000190
VERSION     KCLJ01000190.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 709)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 709)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..709
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="21394cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>709
                     /note="ultra-conserved element locus uce-4023"
BASE COUNT          218 a          127 c          159 g          205 t
ORIGIN      
        1 aagtaaattt gttaaataaa tagttcactg gcatagaatt atgaataatg tggcccaaca
       61 aataacaaat gttttgatta aatcatattt caatagtatg ctaaattcca accccaactg
      121 atttggcaca tttccttttt tgaaagtacc tttgataaga aaaaactcat cagtttagct
      181 tcctgttaac aaagagacag cagccgtctg gattattcta gatccgcagt gaaactgcca
      241 cactatgtat gctcaaagta aagctgtgca agtttgacaa ggggcagatg aatccaggag
      301 ttattgtgca ggggtttaag tctatgcggc agctgacggt tgaaataatc atctatacat
      361 cgctctgagc tagctgagga aaggttgaag ctgtatattt tcaacatatc tagcctaatg
      421 gttaatctgt tgtcttgtac aggggctgct gggtggaatc acagcaatag ctgacagttt
      481 ggaggaattg ctgtgggtat tttcagttgc ctgattcaca aagtggtagg tagaagaaca
      541 ggcttgtcat tgaatgaggc aagtcatgct gtcactccca tcaaaagaac tctggtagcc
      601 aaaagctcaa tcaacatatt gattatttgc atttagaaat acagggctgc agcttcccat
      661 gaaagctgag ccagattgca gaagggtgac tgctcctttg gaggtcagc
//
LOCUS       KCLJ01000191             468 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 21619cal ultra-conserved element locus
            uce-4536, sequence.
ACCESSION   KCLJ01000191
VERSION     KCLJ01000191.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 468)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 468)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..468
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="21619cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>468
                     /note="ultra-conserved element locus uce-4536"
BASE COUNT          164 a           79 c           85 g          140 t
ORIGIN      
        1 tgttaggcag gaattaacaa tcccaacatt aaaaataata actggcctag ttgagggttt
       61 agcatttaag ctctttaaaa tcaatctaaa gctcaggcat tgaatgcaca tcatgaaact
      121 gtgataaaga taaatcatta actaatacct gttgttctgt ttttcttttt agacctccaa
      181 aaggaagcgt ggctacatta agaataaact aattttaaag aaaggcaaga gacccaacag
      241 gaagacagtt taaacacact gttctgattg ctaatacgaa gcagttgtcc ttgagataac
      301 cagtctttgc ctttagctca aatcatgttt cacagcaaca tgagggtaca gaaccatcat
      361 tggtccagat tattgtacaa aattttcagg caatgtctga ttaaaaatat tggcttattg
      421 agaacagctg ttttagattt gtaatgtgaa gcaagacaga gctgctat
//
LOCUS       KCLJ01000192             701 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 21722cal ultra-conserved element locus
            uce-7527, sequence.
ACCESSION   KCLJ01000192
VERSION     KCLJ01000192.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 701)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 701)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..701
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="21722cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>701
                     /note="ultra-conserved element locus uce-7527"
BASE COUNT          233 a          131 c          128 g          209 t
ORIGIN      
        1 atttctccca cttaagcaaa attctgttgc tgcaaagtaa aaattctatt gctgtaaagt
       61 aattgtatga gtgagagccc ctgtttaagt gaacagttta tggttactgt attaaagcga
      121 acatttcaac ttggctaaca caaccactga ataaacacat attgatatta tagaacaaaa
      181 taatatatta gtgcattgct catttgtgct ctgatagtca ccctgatact attagtcatg
      241 cggggagtga caaacacaat tacactcgag tgctaataga gtggaagggc aaaactgcct
      301 gacctcggca tcctgggtcg atttaaatgt ttgatgtctc attgaattag tatcacagtg
      361 tgaaagacaa agctcaaact aatggaaatg agcctggaca tgcaatactg ctgattgggc
      421 tgacataatt agaataatat tcttcacaca gctaataaca agcagaagaa ataaataacc
      481 aagagataac ttaatgactg catgctaaaa tgctcctttg aatatgctaa ggttagcatt
      541 ttctatttac ttatggagca ctgagggaat tttctccatg taatcattag ctgcggtgat
      601 cagctccact ctggtcacta aggccatatg aaactatgca ggttgaccca acttttcaac
      661 atcattattt aaccctcaag gcattgttac aaatatctgt c
//
LOCUS       KCLJ01000193             756 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 21828cal ultra-conserved element locus
            uce-3798, sequence.
ACCESSION   KCLJ01000193
VERSION     KCLJ01000193.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 756)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 756)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..756
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="21828cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>756
                     /note="ultra-conserved element locus uce-3798"
BASE COUNT          214 a          170 c          148 g          224 t
ORIGIN      
        1 gaagctgaac agcagaagag ttaatttatg gcacacagta ggactgcaac gcctggaatt
       61 ctccatcaag agaagaatcg ttggaataat ttaacttaag gaaactgggc atgcaacatg
      121 atcctgggga gctatgcaat taatgttctg tctgccacat taaagattta ccactgagat
      181 ggtccatttg catacaacat acccccagtg ccaggaaaag cttcacttgc tttcaccacc
      241 cagtacgaca ccagacagca atagtgagat gctgttttga ttcagttact gctcagctgt
      301 atatcaaaca tgttagagaa gcaggccttg acttcaacat gtttggtttg gatcagtgaa
      361 ttgagtactt gctgagctct ggaatacaaa tgatcaacct atctgtccga gcactttccc
      421 tgttggtgcc atcctctcgc tgcctatggc taatgcagta atatgtatgc agtgcacagc
      481 atcctctgtg actgccactt gacaaaatgt gccagatcat cattgtctcc agacgagaca
      541 gatttattat aattcaatat gttcctcgtg agcacttttt tctgtcttat gttacagtct
      601 gcatagcatt cagaataata actacatgct cttatgacat tgcagcactg aattcttgtg
      661 gctgaaaaaa tcatttcctt ggctctgaca gaaattcatc cacagcaata ccttcctgtt
      721 gctgaaaatt aatgtgggat ttccctgttc tatccc
//
LOCUS       KCLJ01000194             613 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 21941cal ultra-conserved element locus
            uce-2348, sequence.
ACCESSION   KCLJ01000194
VERSION     KCLJ01000194.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 613)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 613)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..613
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="21941cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>613
                     /note="ultra-conserved element locus uce-2348"
BASE COUNT          205 a          115 c          117 g          176 t
ORIGIN      
        1 atcattcctg ctttcaagtc ccactgacca gagacagatg agcagctctg aaaggggtca
       61 ggctcgagcc tgcatccatg tcacaaatgc agtgagtgaa ggactggagg taaaatattc
      121 cacattaaca ataagtatgc acagagctca gacttcatta aggtagtttt tatattttga
      181 aaagcaatat taaaaaacac tggaaaatgc aataacagtt gcttctacaa gttttaacct
      241 tgtattgctt ggccattttg acatataaat tattgcttac tagcgctcat aaatacacga
      301 cacaataata tgtacagagg caaacaagca tgaaatatgc aaaggaaaac attggcaaca
      361 ttgattctgg taaatcagat tatttcatac ataccaggtc tcatgatggt ggataactac
      421 tagctgtagt ccctgagaag ttaggtaaat accttgaggg ggtttctgtt ttattacttt
      481 taatgcaagc tgacaccgtt atggcactca agagggaaca ggcaggtgtt cttacctcag
      541 ctcattgact tcatcccagt ctttaacagt gtataagatg acaataaact atgcaaataa
      601 atattactct gct
//
LOCUS       KCLJ01000195             428 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 22050cal ultra-conserved element locus
            uce-2688, sequence.
ACCESSION   KCLJ01000195
VERSION     KCLJ01000195.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 428)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 428)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..428
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="22050cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>428
                     /note="ultra-conserved element locus uce-2688"
BASE COUNT          141 a           81 c           65 g          141 t
ORIGIN      
        1 gatctatacc aaagatactt tgtcactgga gacagacact ctggtttaaa tcacaatgga
       61 ttatctgact aaacagttgg ggaactattt actaaatctt taagacaact aattccttat
      121 aaaatgcttt gaaggttttc caaattattt tttcattatt aaacaagcat ttcagatttg
      181 ttatcttacc tttcataatg tctgcgagta catgtagcag cacttgtgct tccagggtta
      241 ccacctaatt catcataaat atgtttccat tgtcgacggg ctgttatctg taaaaatggc
      301 aatggaaatt taatcttgca tcattctaga gcatttgact tcaaaatgca catatgacac
      361 tttcagaaca gcatgtacta caagcactat aaaagcccct acagaatata tagagtacac
      421 agagcttt
//
LOCUS       KCLJ01000196             761 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 22158cal ultra-conserved element locus
            uce-2219, sequence.
ACCESSION   KCLJ01000196
VERSION     KCLJ01000196.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 761)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 761)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..761
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="22158cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>761
                     /note="ultra-conserved element locus uce-2219"
BASE COUNT          222 a          178 c          168 g          193 t
ORIGIN      
        1 ccctatatcc attgaaattg cttcaggcca catttcagag ttgcactctc cattggctgc
       61 atccctggca aagcaagact tctggataac ccatctattt tacaatcccg agtacgctgg
      121 tcagagctgc cattacaaat gccatcttct ctgatgtttg cttggtcaaa tattccacac
      181 tttttaagca cgtgtgaagc attacagaaa cccctatgtt catctccaga gagcagccag
      241 aaagggttaa acaaaatcaa ccctgacaat actagaaaca gttctctcag tgtgtgttgg
      301 ttcactgctc cacagggcat agcagatgtt gtgtctggta gtaagaaggg cccaggaggt
      361 gtgagctgtc aatcactttt tttcctaact acaggctgtg ctatggatat gaagcacgac
      421 taaaacaatc tgtctcagct ggggtgtgtg aggtatcaat aacccttggc agaggtgtca
      481 agagccttgc tggaatcaaa ctaccctgct gaccagctgc ttagcaagtt aacaaggcag
      541 cattcagtgc tcgctgccct cccagcccaa caattaacac aactggagca gggctctgct
      601 gaaatgcagg aggaggccgc atcgcttgtg ctggcgacaa agagatgcag agttctttat
      661 tcagaagcat ccctaacaac atagtgagag aaactagggc agagaacatg ttttattctc
      721 aaatcaaata tgcagataaa tattagcaat aggagacaaa t
//
LOCUS       KCLJ01000197             314 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 22270cal ultra-conserved element locus
            uce-5579, sequence.
ACCESSION   KCLJ01000197
VERSION     KCLJ01000197.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 314)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 314)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..314
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="22270cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>314
                     /note="ultra-conserved element locus uce-5579"
BASE COUNT           96 a           73 c           49 g           96 t
ORIGIN      
        1 acacctgaag ccgcttaaat atttggaaat attttaatga agtcttttga gagaccacct
       61 aacacaactt aaaaacaaat tttactatta ttattttctc ttcatccctt gccagaggaa
      121 aactataaat cttgtctcag ctgaatgaac accatttatc atattcattt tcttgtcaat
      181 acaattatga aaagcctttg gcctttttcc aagcagcctg atttgctgga gaaactcaat
      241 tagtataagc aaggctgcta cagagcagcc ctgtttggca gcccagcaca gccctggcaa
      301 tgctcctctg agcc
//
LOCUS       KCLJ01000198             344 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 22373cal ultra-conserved element locus
            uce-7584, sequence.
ACCESSION   KCLJ01000198
VERSION     KCLJ01000198.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 344)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 344)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..344
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="22373cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>344
                     /note="ultra-conserved element locus uce-7584"
BASE COUNT           87 a           59 c           78 g          120 t
ORIGIN      
        1 aagaagcagc atcagagaaa gtgaatctca caacgacttg gagtaggttt acagttcttc
       61 agcctttgct ctagcctgga gcctgatggg acgctggtgt ccttggagga atggtcgaag
      121 gaattgctgg gggccaattg ctgattttat cattcaaaca caaaatttgt tacaccactt
      181 tatcggtcac agggaaagca attatagtgt agttcaattt tccactcaat gactgtgctg
      241 gggatcaaag tcttgttatt taaatgtgtt tgcctgtgtt ttttccttta tggagatgga
      301 gctgattatt ttatttttct cttgttaaat catcagtcta tttt
//
LOCUS       KCLJ01000199             989 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 22481cal ultra-conserved element locus
            uce-1348, sequence.
ACCESSION   KCLJ01000199
VERSION     KCLJ01000199.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 989)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 989)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..989
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="22481cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>989
                     /note="ultra-conserved element locus uce-1348"
BASE COUNT          301 a          180 c          163 g          345 t
ORIGIN      
        1 agtcattaat tcaatttaga ctgcttttta ctgagaatta tggctttatt gtcaggtata
       61 tcacactgag acttatctta acagcatttc agttttcaca tcattgctat ttccttctaa
      121 tatgttattt gtagtgctag cactgtggat ttttgaaatg attttatcac ccttgataaa
      181 tatttttaat ggctaagctt acttctttaa tatatgcatt ttcttgcata tgtctaacat
      241 tcaaaattct gttccagaag caatatttgt ttacatacac aaacagaaaa aggaaagcct
      301 gacttttagg cttttgacag gagtcttgta taagtggaag acttttaatt ctcaaattgt
      361 ttcacttcaa taactctttt aaagttgttg cgccaagatg cctggcggat taagctccat
      421 tgccttttct tgttttgaac taatgtattc ttgatcaccg tttaatgaaa ctatatacca
      481 catggagatt tcacattaga taagccatgt gaaaccctca tcagacaagt agctctggct
      541 ggtggtaatc cttcagatga aaatttcaga ctagcaggtt ttccaattta aatgagcccc
      601 tttaactata aaaaattggc acggtatgat tgctaaaaat tatttttaaa tttttatgtt
      661 gccaaagtac cccggtggct gtgaaaaaca gaaatactgc cgtaaataca gaaaacatta
      721 actggtcact gaggggatcc aatttacaac ccatagagac aactcacatg gctcactgac
      781 actggcatta ttgggtttgc aatagggcat tcagttctgt tcacaccaca cgaaagcaaa
      841 gctattctta aatatgcaat taaatagatt tattccacaa gtttctctag tcagtggtta
      901 ttactcactt ttacttcatt gcaccctgat ctatagaatt ttcatgatgt gttcaggtag
      961 cctttaggaa gcaacggaac ttgttatga
//
LOCUS       KCLJ01000200             765 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 22592cal ultra-conserved element locus
            uce-3446, sequence.
ACCESSION   KCLJ01000200
VERSION     KCLJ01000200.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 765)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 765)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..765
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="22592cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>765
                     /note="ultra-conserved element locus uce-3446"
BASE COUNT          187 a          146 c          150 g          282 t
ORIGIN      
        1 tgttgtgaga attggaagca gacaaatgaa aaaatgtgaa aaatgacatc taattctatc
       61 agagtttccc ttggttatct tttgccttta ctgtggtttg gatgtatgtt gctaagaact
      121 gactactgaa attcagtttt accatttgtt tttttaactc catttcacta tgatattaca
      181 tcagcatttt gcatacttcc ccagcttaaa gatgtgctct tttagatgtg tgcgacttta
      241 acaatgttct gttcacattt ccttggatag acccaacaat tgcttgttga cccattttaa
      301 ccccttttga gcatcatctt caaagtgtaa ctgtccttga caatgaaaga gaccttccta
      361 ttgtctggtc cttccaggca atctttagca ttgagttaaa tggctttcag atggaggagt
      421 tggctggaag gaaggagaca aagtggcctg ttgtttctga gtgactttgc tagagtttcc
      481 cttttttctt ttagaatagt gcatttctat agaagatgac agacgttttg acaggtgcaa
      541 tatgctttga actgttgtgt cagataattc ttttgtcttg gtttttccca gcagagtggt
      601 acatctcctt aggatgctga tatgcatatt gtttgctttt catttagtgt ggtgaagcct
      661 tccatcctcc ttttctctct ccctccctaa ctttttaaat ggctctttgc atatatgtag
      721 ctgacccaga tgggaaggca gagtgaccat gacttaaacc tctct
//
LOCUS       KCLJ01000201             630 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 22704cal ultra-conserved element locus
            uce-3180, sequence.
ACCESSION   KCLJ01000201
VERSION     KCLJ01000201.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 630)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 630)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..630
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="22704cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>630
                     /note="ultra-conserved element locus uce-3180"
BASE COUNT          186 a          126 c          121 g          197 t
ORIGIN      
        1 atatataaca tggaaaaggt aatatattta tatggtgtta caatagaaat ttctttgttt
       61 cactggaaga cttattacta ttgccagacc ttggggtttg ttgtctggaa gaggtaactg
      121 ctttcttatg acaaagactt gaaagatata ttcctttaac tcccctactt cacgttcaca
      181 tgtgttgaaa ctcattgctt ctggaaatga agatgctctg gtgtcagctg taaaatctgt
      241 atctcacttc ctcagacaag tggatattta ttgacagggt gtgagagaga aagagaggag
      301 agactgcctg tcctggagcc agtaaccttg gtgaagatgc aatgtcacaa acaccaagcc
      361 atcattctca tagatgtaca gcatattatt taaagggaaa caaatatcgg ccactgaatg
      421 tcactgcaag gacacatctt ctgcctctta actaaactta tcagtgcagt ggtttaatat
      481 ggtacctttt tcatcctccc ctcaaattca tcttacagag cagctcttga cactaccaga
      541 gagcagtcaa gactaagatt tagtgacgtc tgcttcaaac agatctagat ttattgacat
      601 ttgttgcctg cttcttctct cagtaactgc
//
LOCUS       KCLJ01000202             517 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 22816cal ultra-conserved element locus
            uce-5534, sequence.
ACCESSION   KCLJ01000202
VERSION     KCLJ01000202.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 517)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 517)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..517
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="22816cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>517
                     /note="ultra-conserved element locus uce-5534"
BASE COUNT          194 a           86 c           78 g          159 t
ORIGIN      
        1 attaagtgat aatgctccct ttgaattttc agcagagaat aatgttttat ttaaaatagt
       61 tacagcgtgc cttttgattt ggagtttaaa gtaaataata tttgtacatc taaaacatac
      121 tcaagacaaa tgaaaagcct ctagatgctt ttgtatgaga tgctgaagag ctctacaaac
      181 ttaaaagcac aacctcaatt aagcccatct tcatctggaa aaaaaattag caactgaaag
      241 ctgaatatat tagataatgc acacttgcag gagagcattc tcttagcaaa aaattcttga
      301 taaccaacct aaagctggcc ttcgagttgc tcgatgctaa ttttgtttga aactgtttaa
      361 ctaactctga atagatatcc atattcaaca aagacataat taatggcaac cttttcttct
      421 gcttagaaga catcataaca agcagaaaag tacaaaaaga tttttatagt aactaattta
      481 aggacaaagg gttgacctct agcatttcat taaataa
//
LOCUS       KCLJ01000203             753 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 22926cal ultra-conserved element locus
            uce-170, sequence.
ACCESSION   KCLJ01000203
VERSION     KCLJ01000203.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 753)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 753)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..753
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="22926cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>753
                     /note="ultra-conserved element locus uce-170"
BASE COUNT          241 a          147 c          131 g          234 t
ORIGIN      
        1 acatacacac agggtctaat tcacacaata aatgcctaag ttttccctac ttggggaaaa
       61 atcaaattca gcagaagtct aaaagaaggg ttactgaaat gctttgtaaa attacactgt
      121 ataattaatt ccatagtaag aacgttttta tggtgtgtgt tggtgacctt ttattaccat
      181 caagttcaca atgctggtgg gctgcctttt aatccctccg cagacaaagg ccctaaataa
      241 acacagatcc cttcctggga aaaagtcctc tctggttaaa tggtaaggaa atgagtaaat
      301 cattagtaat ctttaaagcc aaagctataa actcaagtta ccttaagtta aaatgaaagt
      361 gtcctgcaag agtttcaaag ttctgtcaca gatagaaatc tccagctctt gactccagac
      421 taggcgccag ctgataaaca aacaatttaa gtcaagagct ggagaattcc cagctttttc
      481 atttaatggc tttggccaag agtatttatt gcctccagtt ttattctcac ttagctctaa
      541 gaggaaattt aaactcatca ttatcttaaa gccccatatg ggccacagtc agctcacctg
      601 atagagctcc ttttactctg cctaagttct actccccact agaagtgatg taatagtgta
      661 aactaattaa atgtagtttt aggctgactt tttaataggc taaataaatt ttgttcaata
      721 tggtttatat tcccacttgg ggcagtaatg att
//
LOCUS       KCLJ01000204             817 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 23038cal ultra-conserved element locus
            uce-7468, sequence.
ACCESSION   KCLJ01000204
VERSION     KCLJ01000204.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 817)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 817)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..817
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="23038cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>817
                     /note="ultra-conserved element locus uce-7468"
BASE COUNT          238 a          151 c          153 g          275 t
ORIGIN      
        1 cctggaaatg ccaaattaaa gtgccattca tttatgtaca aggattgaaa tatttctttt
       61 ccaggaacag taccagtttc tttataaggc aatgctaagc ttggtcagca ctaaggaaaa
      121 tggaaatggt cccatgacac tggacaaaaa tggtgctgtg atggccagtg acgaatctga
      181 tcctgcagaa agcatggagt ctcttgtcta attggaaacc tgaaaaggca cttaatttgt
      241 agaacttctg aagactgagt gaactttttt gaggcctttt ttgccagact ctaggttata
      301 caataaccca attacttttt tacactgata aaagttttga tatttatttt ttgccatttt
      361 atgtcttaat ggtatcctac tgagcatttg cacctctgtt tatttcacac agtgaaacgc
      421 aattttatct agtttgcact atatgatcag tgttactgcc tataatatcc taatacaaga
      481 caagccctga tgtgacattc catgacaaca aacatttttg tttaaatgca gtgaagtttt
      541 gctaactaca gtgaccctgg aatcttaaat cttgaatgct aggccagatg gattctttct
      601 acaacagata ctgtacccct tcataccata tttattattt agtgatcatg tcaaaggtgt
      661 tctgcattcc agtggagtgg atgagcagtg ctcatccttt cttgacaaat tgtggcaggt
      721 tattgttagc tacagtaaag gtccaacagc cttgtggagc tgaaacaatt atttctgtat
      781 tgtttcaaat tgctgtgtta tacacttaca ggcctga
//
LOCUS       KCLJ01000205             548 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 23149cal ultra-conserved element locus
            uce-3222, sequence.
ACCESSION   KCLJ01000205
VERSION     KCLJ01000205.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 548)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 548)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..548
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="23149cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>548
                     /note="ultra-conserved element locus uce-3222"
BASE COUNT          197 a          116 c           82 g          153 t
ORIGIN      
        1 aagtacaaat aaacaaacca ctaaatttaa ctgttcttac ttccactaat tacacatgta
       61 tagcaaagca aaatttcatt tcaagtcaaa aaactgaaag ctagtccctc tgctttaagt
      121 gttagattta ggaaggattc ctttgctgaa aacaaacata tacaaagaag tgaataagag
      181 acagcaatca aagtattttt acttacaaaa cggaagtttc tcctatatct aacactgcac
      241 aagggcataa tcaaaaggta agcagaagtc ccttacactg cctcgctttg ccagagaatc
      301 accgtagtct gctggcaaag tccgcttgct ggactttttc tgctcatgtt caactgcatc
      361 ttcaattata ggctcaagcc tcatctggac aaacaccaaa gatgtggatc aatttctttt
      421 cattatacag tgaggaaaga tctaaaaact tctgaaatat ttagaaaacc gcatagaact
      481 cactgatgtt taaataaaaa acctaatgag gctctggcca aaaaatctct gaaaaccccc
      541 ctcttttt
//
LOCUS       KCLJ01000206             910 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 23259cal ultra-conserved element locus
            uce-1906, sequence.
ACCESSION   KCLJ01000206
VERSION     KCLJ01000206.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 910)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 910)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..910
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="23259cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>910
                     /note="ultra-conserved element locus uce-1906"
BASE COUNT          274 a          148 c          175 g          313 t
ORIGIN      
        1 ttttttgccc acctttcaca ttggacaagt tcataggtta aaataatgta aatcagcaca
       61 agtccactgg agccttttgt gccttttgaa gaaccagccc ctcagggtta ggtgccttcc
      121 ttttgctgtt gggatgagaa ctactttcct cacaggagtg tttaaagctt aattttttat
      181 agcatataaa gtgctcagag atgttcagat gagggatgtt gtgaaaatgc aaagtagtat
      241 tattgttgat aaattattta aaatattgtg gtccattgag aaaatactgg tttgtaggca
      301 gtgaagtggt taatacgatt gcatctctta caggtttcac cagatacact cactcactta
      361 caatggataa ttgttagctc ttgttgtgca gatgctgttg cagatggagc cctgtacctg
      421 catgcatagc aaatgaatta gactggcaat cccctttata aagcataaat atgtaatttg
      481 ttcagctgtt gtaattaaat atgtatgtgt gaaacagcca ccattcaggt cattaatgat
      541 gcgccatgcc aaattagagc ttacagacag taatgtacat tgttgtgcaa tgagggaatt
      601 gcaaataaca tagctaagcc tttcctagta aagtgatgga ttcagtggct ttaaaaggaa
      661 tatttatatt tctagcattt tgattgcttc agtctatatt tacattgatg ctcaatgaaa
      721 aagatacaat tggatgaaat ttttcctgtt ttgttttata ctctttgaac atgatagaat
      781 acccattagg tacgtgtcac acaacattta ttgggtgtaa catttcatac ccactggtaa
      841 taggctgaat atgttgctat gatcattctt aaatatatag tcaattaaga cctagtaagt
      901 accttttctt
//
LOCUS       KCLJ01000207             603 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 23371cal ultra-conserved element locus
            uce-2831, sequence.
ACCESSION   KCLJ01000207
VERSION     KCLJ01000207.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 603)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 603)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..603
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="23371cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>603
                     /note="ultra-conserved element locus uce-2831"
BASE COUNT          211 a          121 c          109 g          162 t
ORIGIN      
        1 tcctgcccat gaacagcatt accctccaag ccactcagct ccaattgcat gatacttaaa
       61 attcctcacc tcatactcaa tggccataag aggagaagaa aagagtaaac aaacaggaga
      121 tgacctttat gagtaagcat aaaaagatta atcgaccccc gtcagccagt cattaaatca
      181 aataagagct tttcttgtac ttttaaagct cagatttaca gtcaggcaaa ttgtgtaaaa
      241 aggctggtaa tacagtgacg cccagtgcca ctgggcttta gaaagctgac agttgctgta
      301 aaatagtcat taaacaacct ctagaagaga ctcatcagca gatgccccca ggtgaaggag
      361 agagaaagct gagagaatga aggagaatct aacatcttag catgactgaa ttaaacagag
      421 catattatgc tgattttcag agtcagccca gtaatttaat tttcatagca gttcctttga
      481 ttgtagcaac cattttatga aacattaata aaactttttt ttatgtagca tgcatccctt
      541 ttccatttca ttaaggacag gatgtacaaa tttgctgacc attagctctg taaatgacaa
      601 aaa
//
LOCUS       KCLJ01000208             575 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 23480cal ultra-conserved element locus
            uce-4122, sequence.
ACCESSION   KCLJ01000208
VERSION     KCLJ01000208.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 575)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 575)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..575
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="23480cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>575
                     /note="ultra-conserved element locus uce-4122"
BASE COUNT          197 a           95 c          106 g          177 t
ORIGIN      
        1 gtttacttaa aattaatttt gtgttttcta ccaagaggtg tatttacttt tcacagcctt
       61 agaggaccat acagcaacat gggagaaata aagcagatat gggtggggta aaacaaattc
      121 attttctccc tgtgcatttc tgtgctgtgg aatagacttt gtgcttattc acacagaggg
      181 agtttagaaa tgtttttaga aaatgcagat gtgtaaagca ttcttaataa ggatgggaaa
      241 agagtttgca ctcccctttt aaccactctc tcacctcagc ccttttcagc atgtaacctt
      301 attctctgtg ggattacttg gatgaaaacc aattagagaa ctgctcacac aatataaatg
      361 catacagatt agtacagatt gaacggtacc aatgccaact aatcatacag tatataaagt
      421 cctaaacaat atagatatta aggaatgatg gggaaatgga ctcatattgt tataaaactg
      481 agcacaaaat ggaagcagca gaaaactatt tatttaaata ataaataaag tataggtttt
      541 cttttgctct ttgtggcaat ctgcccatag acaaa
//
LOCUS       KCLJ01000209             638 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 23591cal ultra-conserved element locus
            uce-5447, sequence.
ACCESSION   KCLJ01000209
VERSION     KCLJ01000209.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 638)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 638)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..638
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="23591cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>638
                     /note="ultra-conserved element locus uce-5447"
BASE COUNT          235 a          122 c          113 g          168 t
ORIGIN      
        1 tattcgaaat atatccaaaa ctttcataag ctcagtcatg tgtcttgtga caggagcaaa
       61 acctttccct ggtacaatgt ccattgccgg caatggatgc accaaaaccg ccaaggagct
      121 cagagttatt gcacaatata tgaagacctg gaattcttcc aaaagcttaa aataaaaata
      181 atggaattat tctgacattt ctggacacct gcattaatac tgtatgacta ataaaagcat
      241 gtcagttgca tggactgaac cagcgatcaa catgcgccca gaatgcacac tagtaaaaat
      301 gcagtcaaag gaagtagtct tcattgccta taggtcactt ccagtcaaag gttaaagttc
      361 aaagactgaa tgatcaaagt gctcattttc tcagtaggac tatcttctgc tacgaggatc
      421 acaaaatggt ggcatcaaca tgtgtcatct ttaaaataaa agaagagcat ttatggaaaa
      481 catataaaca aggtgctata ggcagaaaca attcctagca cagactaaca tgcagaggaa
      541 atactctgat ttgattttgt tcaataacga ctcaagagag tatcaaaact tccaaaattt
      601 agcaaatact ccataaaaat gacattgatg tttagaaa
//
LOCUS       KCLJ01000210             539 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 23702cal ultra-conserved element locus
            uce-4458, sequence.
ACCESSION   KCLJ01000210
VERSION     KCLJ01000210.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 539)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 539)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..539
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="23702cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>539
                     /note="ultra-conserved element locus uce-4458"
BASE COUNT          119 a          126 c          151 g          143 t
ORIGIN      
        1 gggtcccctg tggtctggcc tctttgtctt agccatgggc tgggggtact gggagggtgc
       61 acagcctgag gagagggcag gctggcatca gatgggaaga gggaggactc accagcgggc
      121 ttgacccgtg tctgtaattt gtaaagagca tttttacacc agatcaatgc tttcctcagc
      181 attttaatgc accccattgg tgtccttaaa ctctaatgat gcagtctgtg agaagctgcc
      241 atttattacc cacagatggg gtgataatta ttgacaagat tgtaactaat aattaaaccc
      301 atttgctcct ttaaacaagt tggtgtgaat tatttgcagg gagttcttta gcaggcccgt
      361 ggtcactccc gcgtgatgtt gtccaggagc aatccccagg gaggagggaa ggctgctgca
      421 aatcaaacct gtggcagaag tccttcctct caccttctgt gctcccagct gtgttaggga
      481 gaggtgtgtg agcaccaccc cagtctccag ggctgtgcct tctgaagctg cttccaggg
//
LOCUS       KCLJ01000211             822 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 23815cal ultra-conserved element locus
            uce-1890, sequence.
ACCESSION   KCLJ01000211
VERSION     KCLJ01000211.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 822)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 822)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..822
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="23815cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>822
                     /note="ultra-conserved element locus uce-1890"
BASE COUNT          269 a          150 c          145 g          258 t
ORIGIN      
        1 caaggctgcc caaggaagaa cataaatagt gaggcacagt gtttgatgtg ggctcccaca
       61 taaggtattg aaggcacaca tcggtaaatc ctgaacctgc caactctttc ctgtgcactg
      121 tcactccaga ctagttagag tgtatttaga aagtagctaa acacactttt gtggaaatca
      181 ttaaataaca cagcaattca tacatttgca gcagacagct tctaatgcac attattaact
      241 gaaaataaaa tctcagcatt tatcttatgt tattttatcc ttcccagtat gactgagaat
      301 ataataccct aaagtttaag actggtttgt aaacacagtc cctagtgtct actattgatc
      361 ttttgctatt ttaatgcatt tttactgacc gacatgtcct gtggtaaaga atattgccta
      421 aattagttat ctgattggtt cttttgatta atgatgggac tgtgcttcat tacacatgac
      481 aacatgatca gaataatcac tgcagccata gaagttggga ctggcatttt ttattccttc
      541 atttttaaag ttcatttata aaattattta atgtatacgt cctaagttgt aatttattta
      601 catgacactt ttttcgatgg gaactgttgt actgtgtcac aaatggctaa gaaaacaagg
      661 taaactagat gtacaaatca atgtcttctg gctcaagggg aaaaaaacat aatcaagatt
      721 caagagctga ccttgtccaa agtccaactt gtcacacaac aaacagtgag gtgcccaaca
      781 aatcactggg atcagcagga tgtattcaaa ggaatgttta aa
//
LOCUS       KCLJ01000212             537 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 23926cal ultra-conserved element locus
            uce-67, sequence.
ACCESSION   KCLJ01000212
VERSION     KCLJ01000212.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 537)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 537)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..537
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="23926cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>537
                     /note="ultra-conserved element locus uce-67"
BASE COUNT          161 a          105 c          127 g          144 t
ORIGIN      
        1 acagaattgt taaaatgttt ggggattgga acttaaactt gtgaatctag catttttgga
       61 gaaagctcag attgttaagg aatcagcagg acacatcacc aagctacaat aggttcactt
      121 tcatgtggat gctgtagcag gcaagccttc atggaaaaac tctgaatgtg aatttagcta
      181 gttttggata aagacgcctt tcagcgtcaa taaacaccat gaatgcagcc acggtagagt
      241 tacaacttaa tgagatgagg ggaagtgcac agggtcaggc ctcatctccc ggcctctgtc
      301 atgctaatca gctgggcagc ctgcagctga aaaactgctg gaatttttat ttgcatttca
      361 tttagttgga aggaaattga cccagatggt ccacaaaggc aatagaaggc tggcaagcag
      421 tctagtgctg cacacttttc cgaggggctg cacttgtccg cccgtccctc ttggagccca
      481 aaacataaaa gattaaaaca gcgtaaggga attgatttca tgatttttag ataattt
//
LOCUS       KCLJ01000213             700 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 24032cal ultra-conserved element locus
            uce-412, sequence.
ACCESSION   KCLJ01000213
VERSION     KCLJ01000213.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 700)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 700)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..700
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="24032cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>700
                     /note="ultra-conserved element locus uce-412"
BASE COUNT          207 a          141 c          140 g          212 t
ORIGIN      
        1 atttgttttt ataaaacaac tgcagaagct ttagtggcgc ctttgtttag taccaattac
       61 aaggatttca tgcaattgag atgttttcat ttaaaaacat ggagattaca catgcaaatt
      121 ccttgctgaa aatggggaaa agcagtaagg tatccttggt taacttttta gttatttaaa
      181 agtagcttgt tggagattga atatttctat gtttcactag agcttttaaa tataaaagag
      241 atatgagact atatctgaca ccatcaggca tattatatta aaatttatga acaacttcat
      301 caaaaaccac tttccttctc ctgcatagag acagatttgt tctgacataa acgttacatg
      361 gctggttgca gcctcagatt aatgcgaaga ccctggcgat tccttttaga cgttatttta
      421 tgaaataata cctgtcagct gctgcctgat cccagaaaag ggggcaggtt ttccaggtca
      481 tcctgccatc tgtcagctaa agctcatctg tccctccaca ttaccacctg atctgtgcta
      541 acaggcctca cagggagccc cgcttcattg gcccggtggg agcccggcaa agagactgcg
      601 cgaggacatc acctgtgatt cccagattta attaccactg aagtgatgaa gatgtgcaca
      661 cagattgaaa tgcttttgaa taaatgcatg gctctgatag
//
LOCUS       KCLJ01000214             555 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 24145cal ultra-conserved element locus
            uce-3322, sequence.
ACCESSION   KCLJ01000214
VERSION     KCLJ01000214.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 555)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 555)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..555
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="24145cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>555
                     /note="ultra-conserved element locus uce-3322"
BASE COUNT          159 a          117 c          105 g          174 t
ORIGIN      
        1 taagtaaaat acatcatgct ttccaatgag accatgaaaa gacatggcca aaccagagct
       61 ttgcttatgg tcattgtacg gttttatttt tttaaagtta tgtatgcctg tctgtataca
      121 ttggtgtata ttgttgaaaa taaacagaga ccttatgtta tgtccattgt gattgcttac
      181 aaaagatttg ctgtgcgctt gggtgatcag tgaagcttga atctccctct atttactgta
      241 tggtcactgt cagttcaatg aactgcctcc ttgttctcca ccattgtccc acactccctt
      301 aaacatttgt cactgaagtg cctccaaaga caaataaact gtcaccaaga attcaaacct
      361 ggtaactggg aatgaaaagg gatcagaacc tactggatta ttttacatta aatgatgcag
      421 ctccccctgg aagagctagc ctggacagga cttcagcaag agaacttgcc cctctgtcag
      481 gaaaggtgaa gtcccttgct taaatctgtt cttgctacat cacttgacat ttcaaggttt
      541 ccatttgtct gaaaa
//
LOCUS       KCLJ01000215             801 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 24252cal ultra-conserved element locus
            uce-522, sequence.
ACCESSION   KCLJ01000215
VERSION     KCLJ01000215.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 801)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 801)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..801
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="24252cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>801
                     /note="ultra-conserved element locus uce-522"
BASE COUNT          243 a          162 c          150 g          246 t
ORIGIN      
        1 cagagcctgt ttgtgcagct cctctttcat accttaccta tagaagggtt gggacttcaa
       61 catgaaagta cagagcttcc tttgcactgt cttaacttct gtgactctct agctttctct
      121 cttttctctg tctctttcct gatttggctg cttagggaca gacaggtaat ggagaagaaa
      181 ttgaaaggga aaatacaggg aaaatgtaaa tgaaaagaag ttattataac tgttataatg
      241 aagtgccttt catttaaata taagaatgta acgctgaaat gaacttgtga tcctgaaatg
      301 catttttaat gagtttcctt tttattttgc tgcttcagtg gcatatttta aagacccttt
      361 gaaaaaagcc acattaaaaa ccccaccaaa tgccacaaca tgcaaaattg gatattggtt
      421 tattccaaaa ctgctgatca ggaagagtgg ctcttcaaca caaaatgttg cagtcacttt
      481 atttaaatga gtttgaattt gcattgtgat gtgccattct gatttagaaa aaaaaaatta
      541 gattttcaga tcaaattgac ccagccagtg aagcattaag aaactggcag gtttagtctg
      601 aaagcctcat gttatatcaa acctgcagcc ggtggaagtc acagagcagc agtgagaaaa
      661 caactttctc cctgaaatct ttctcttgtt accgcataag agttctcaca tattttctcc
      721 ttcttctcat aggagaacgg cctttccagt gcaatcagtg tggagcctcc ttcacccaga
      781 agggcaacct cctgcgccac a
//
LOCUS       KCLJ01000216             459 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 24363cal ultra-conserved element locus
            uce-7646, sequence.
ACCESSION   KCLJ01000216
VERSION     KCLJ01000216.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 459)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 459)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..459
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="24363cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>459
                     /note="ultra-conserved element locus uce-7646"
BASE COUNT          148 a           86 c           82 g          143 t
ORIGIN      
        1 gcccctggga atgaaaacgt ctgaactgca gtcaaatata attacctcat tctcatattt
       61 cctagtgagt gagaatgcat caatgcttgt gtgcccttgt gctgatagat tttgccacac
      121 agaataatca ttgttggaat taagcataat tgtcaagaaa gacttggtca tcatgagaga
      181 gactgtctca tacaactgtc cttttgcttt ccaacagtaa ttactttagt aattaatctc
      241 tgtcatttaa ctgtattaca ttttgaaaag agaaaatgga agaaagactg gtttctgact
      301 aatttacatc acagtttaaa atcctagaat agggtgaacc aaatgtcaaa aaatgggccc
      361 tttctaatac ctagcacaag cacgaatgaa gtcaggttcc taaagtcagc ttcataatat
      421 ctatattggc tgaaagtttc cacttcaggg ctcttagct
//
LOCUS       KCLJ01000217             269 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 24472cal ultra-conserved element locus
            uce-3697, sequence.
ACCESSION   KCLJ01000217
VERSION     KCLJ01000217.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 269)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 269)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..269
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="24472cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>269
                     /note="ultra-conserved element locus uce-3697"
BASE COUNT           96 a           55 c           51 g           67 t
ORIGIN      
        1 cccctagaaa tgagtcacaa aggtttaaga tatattgcta tctcaagtgg agtcagaatg
       61 gctgcaaaat gttgcctgcc aacactttga tccatccaca tgaactggat atagacataa
      121 gagcttacta aacaaactgg acagagtccc agtgggaaca ctcaaaaatg tattaatcaa
      181 agtcaagcgg cagagcaaat tgaaccagtt cattaattat gaaaattctc tcaccaagtg
      241 acactgtgtg aggttaacac gtttcaatc
//
LOCUS       KCLJ01000218             710 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 24580cal ultra-conserved element locus
            uce-1824, sequence.
ACCESSION   KCLJ01000218
VERSION     KCLJ01000218.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 710)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 710)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..710
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="24580cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>710
                     /note="ultra-conserved element locus uce-1824"
BASE COUNT          211 a          126 c          131 g          242 t
ORIGIN      
        1 tgaaagagtc tttaaaatgc atgcaagcaa tttcagtttt aaaatcatac atgaatatta
       61 ttattaaagt aataacaaga atcagcttaa tttgaatgct taaataataa ggggagaaat
      121 atgataagta gttgtcaata ttaaaaccag ctgaaaggct tcaggccttg tagtaggtag
      181 aatgaaacag cagatttcag tatccacaat cctttcagta ttaaattttc agtaaaataa
      241 aattacttgt atatgaaaac atagcctttc cccagctctc ttttttttcc tgatcagctg
      301 atgaagagac tagcagctcg ctgctttgct ggcttgttaa ttttatcccc actaactgtg
      361 atttccgata gccggcctgc tgatagtggt aaggtaaata tcctttttca ttgccgtctt
      421 gaagattcag tagaactaca tcacaggcat gtgtaggtgt gtaacacatc aaaagtcggt
      481 gttcttcgta tttcaatgta caactgagtg cttgaggaga gcaatgacat taactgttga
      541 cagccttgca tgctgtattt attgttagct tttctagctt ccaagatgca gagaaatttc
      601 cttttcttaa tcttcattag cctcagtggt ttatagcgcg tgtcctgctt tagccagatg
      661 aatattaatg aatttgtgtg cacccttctt ctttcttatc agatctcgag
//
LOCUS       KCLJ01000219             401 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 24692cal ultra-conserved element locus
            uce-4558, sequence.
ACCESSION   KCLJ01000219
VERSION     KCLJ01000219.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 401)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 401)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..401
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="24692cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>401
                     /note="ultra-conserved element locus uce-4558"
BASE COUNT          161 a           59 c           80 g          101 t
ORIGIN      
        1 ttatttaaga aaagagaata taaaattaag aaagacagat ggactcataa gagtgaaata
       61 caaatagtct gaatcaggat tgatttcaac ataatgtggt ggaggaatcc ccacttattg
      121 atcaacttta aagcccatgc acagcactta aaaagataaa gtaagcaagg tcagataatc
      181 aaagcattta aatagtaaaa acagcaactg ccactgtaga ctgctaaaat aaatccataa
      241 tacaaattgc tttagcaaaa agtggatgag cagctgatct tcctattgaa cttttatact
      301 gttcagtgac cacactgggg agaggattgg aagaaatgcc ttgaagatca atattgagtg
      361 agaggtagca gggattcatt ctgaacatga aagaattacg a
//
LOCUS       KCLJ01000220             620 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 24798cal ultra-conserved element locus
            uce-7328, sequence.
ACCESSION   KCLJ01000220
VERSION     KCLJ01000220.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 620)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 620)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..620
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="24798cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>620
                     /note="ultra-conserved element locus uce-7328"
BASE COUNT          194 a          114 c          118 g          194 t
ORIGIN      
        1 aactaacgac agcatttgag gaggaagggg ggctttgtgt aaaaagaagt taattaattt
       61 tgggggtttt aatctctttt cttttgtacc aaactataaa acaaaaattc ttcgggagcc
      121 agaacatgta cctccagtaa tcgaaagaga ggcaaggatc tgactaatag atattacgtt
      181 ccattatatg gtcttgaagt caataaacat taggttacct tcatgcagtg aaaaaagacc
      241 agatttatta aaaaatctta tctggagggt ttgcatttca ataggatgtg aatttgcata
      301 ttttaacaat aacctcccat cattctgtct gatctgtgct cagttggcca tacagatcac
      361 tttatcttga atagattatc accggtttaa taaacccttc ataatatgca ggtataacaa
      421 tggtacttca ttggataaag aaggcattaa agttcttttt ctggaaatag gggtggccca
      481 gctagtgatt aactttatac ctctgtacat ccctgtgctg aataccgatt gaaggagagt
      541 attcccatta ttcacattca aaatggacca gctcttcaga gctcctatta actcctcctt
      601 gcccatggca gctgtgcaga
//
LOCUS       KCLJ01000221             687 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 24907cal ultra-conserved element locus
            uce-5412, sequence.
ACCESSION   KCLJ01000221
VERSION     KCLJ01000221.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 687)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 687)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..687
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="24907cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>687
                     /note="ultra-conserved element locus uce-5412"
BASE COUNT          223 a          123 c          115 g          226 t
ORIGIN      
        1 aaaggagtat tttaaatatg ttccatacaa gatatttctc cattcagagc ctcagacaca
       61 tagacggata ggagtgctta ctgaaatatt gcagcacatg tgtgagctgg gatatggttt
      121 atagcagtga aaagaggaat cactgcatgc aagtgtatgt tacacgctga actacactgc
      181 tgtatatagc attaacttgt acttctttac tcacctcata caacagaatc caaattaggt
      241 cccattatta cattgaaggc tcacactcaa tagcagttaa gcttctttga atggattccc
      301 tattgtataa aaagtatgcc agtctttgac tgccaaaatc aattagtcac attcattatg
      361 cctctattta ttaatgctgt acactttata atgcatttgc tgctgaacaa agaaagttat
      421 aaaatatcaa atatgtgtta tgattgtaat tatagcaaaa ggagtaatga tctcttttag
      481 tcgctaactg gttacaaagc tcctgtaaag attacattag tggtgacaga tttatgatct
      541 tttccaagat gtaatccttt ctagctcaca tttttcaaca gaagaactat gtgattggtt
      601 acaggttatt ggcttcaata gttatattca gcagagatta ttgtgcttct gcctcccata
      661 atccaaacac acaatgtaat cttaaca
//
LOCUS       KCLJ01000222             640 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 25018cal ultra-conserved element locus
            uce-5200, sequence.
ACCESSION   KCLJ01000222
VERSION     KCLJ01000222.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 640)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 640)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..640
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="25018cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>640
                     /note="ultra-conserved element locus uce-5200"
BASE COUNT          225 a          125 c           96 g          194 t
ORIGIN      
        1 caatcatcat ggtcaccagt agctacattg ctcaagtatt tgtaacaaat tggaatacta
       61 atgaagcgtc cttttctcca cctgcaatat ttcattacat ataatgtaag tgcatacatt
      121 taacgtatat ttatacagaa ctaataaaaa aattaaatac atttgcattt ttattatcac
      181 tccttttaaa aaagttatta agagtactta gaaaaacata ttgccctatg aattcctatt
      241 tacagtcttg cataaaggtg taaataaaag caactaataa gctacccaga cacccttctg
      301 agcaagtggc taaaagccaa tcaatattat gagttaatcc tccctggatg ctcattcaat
      361 taaaggtgtc agtaatgcct catctgatgt ggcctcaatt aaatccagct atctgatggt
      421 tgaaaacaca aggggataca gcaacagcag caaaaccaga caaataggca gccttcgtgt
      481 gactgctaat tactacacct ggtgtatatt atggcttgtg cacttaacac agcacgtggt
      541 aacttccaat tcagctgtat tcactcagta aataatgcaa ctagaaataa ttctgtattt
      601 cagctccagg aatttaaaac cacttagtgt tattatgaaa
//
LOCUS       KCLJ01000223             388 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 25125cal ultra-conserved element locus
            uce-6035, sequence.
ACCESSION   KCLJ01000223
VERSION     KCLJ01000223.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 388)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 388)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..388
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="25125cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>388
                     /note="ultra-conserved element locus uce-6035"
BASE COUNT           91 a           92 c           75 g          130 t
ORIGIN      
        1 gggcccggct gccgcctgct gccgccgcgc gggtaatcac gcgtcccccc tcactgctga
       61 tttgcaagag cagattaatc agagcgcgcg gcttgatgaa atttgctgtt attgtgccca
      121 tttttagaaa catcttttat tatcttcatt attcatttac aggggaccgg catcaattat
      181 gcaaatgagt tcacagactt tgcagattac ttcatttgcc gctattgttt gtggaaattt
      241 aattattaaa tattattaag cttgcgtttt cttcaatttt ccgaggctta gtttcatttg
      301 atttttcctc cagctgctct cgtttccttt cagtgccaaa acagctcctc atcaaagcag
      361 ctctggcatg tgaagaccaa ataaaatc
//
LOCUS       KCLJ01000224             485 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 25230cal ultra-conserved element locus
            uce-813, sequence.
ACCESSION   KCLJ01000224
VERSION     KCLJ01000224.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 485)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 485)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..485
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="25230cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>485
                     /note="ultra-conserved element locus uce-813"
BASE COUNT          136 a           94 c           95 g          160 t
ORIGIN      
        1 ccaaacccta cacataacac aagtctgtgt aagtttctgc tggagtttct caaagcccag
       61 gcaatccttt cttgctttta atgaaattcc tttctatttc ttcaggtatg actccccttg
      121 gacatggagg gcatattttc tccttgagtt aggacagctt atgacaaata atgatgagga
      181 atcaatagac aggagggaaa tattgggtga gaggctgaat gaatctcaga gataaattat
      241 tgaccacggg catggccctc tctcctttct cttatatgtt cgtattccat ctcactaaca
      301 acctgaaaga aaatcaaata ttttgtttgg gggcttcact aatatcagca acttttacta
      361 tcttaatggc atttttattg atctcagctt taatgggagc tgtatatatt tgatgttggt
      421 catttaaagt agatgtgagt aatagacttt cccagtgagg atcataaagc agccccttgt
      481 ctggc
//
LOCUS       KCLJ01000225             426 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 25339cal ultra-conserved element locus
            uce-4479, sequence.
ACCESSION   KCLJ01000225
VERSION     KCLJ01000225.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 426)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 426)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..426
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="25339cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>426
                     /note="ultra-conserved element locus uce-4479"
BASE COUNT          136 a           73 c           76 g          141 t
ORIGIN      
        1 cttaactgtc tgaaatagta atggattcag acagtttagc ccatgaattt ccttactgga
       61 cagagtggga agctggaaaa gtaaaggaca acatcagtgg agtatttcat attcaaagta
      121 aatttaattc acagactggg aatggaaatg tcattgcctc gcttagaggg ttaatcactt
      181 tctaatttaa actggcaaat tttttaatga cactgtgaaa ttaacagcat tttattgtgt
      241 taattatctg caggacacta catcattact tctaataaat gtaaatgtga ttgcctctcc
      301 taggacaata tagagacaag gtgagttttt attggctatt tactcgattt cagacccccc
      361 caccccatgt aatgcatatt caatatggtt tagtgcacta ctcttctgtg aattttagtc
      421 aataaa
//
LOCUS       KCLJ01000226             636 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 25443cal ultra-conserved element locus
            uce-5314, sequence.
ACCESSION   KCLJ01000226
VERSION     KCLJ01000226.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 636)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 636)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..636
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="25443cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>636
                     /note="ultra-conserved element locus uce-5314"
BASE COUNT          222 a          116 c           96 g          202 t
ORIGIN      
        1 aaaagcagca gtttttcagc aggactgaaa acagcatttg atgtcatcta ttgtcacttt
       61 aaaaagtttg catttccata aatttatact tcaatctttg ctgtactaca ttcacacttg
      121 ggtagctaat ttagggctca attttaaaca cctatgtcca ttgatgaatc acatcaatta
      181 taaaaaaaat gcaacagaga gaacaataaa taatttgttt ttaagtacct tataaataaa
      241 tcttgtaatt tacaggacta gcagcactag gtttacctgg atagatggct tgtttaggtg
      301 acccagattt gaagttgttt gtcgtggttc atgtcctaag accatcatat tagcattgat
      361 caatctgaag gcatcaataa caacctgtaa aaacaagatg tcaagtcaat tctttttaga
      421 aaatgcaact aatagagcca agcaacagtg gacaaggcac aatcaactct catctgtttt
      481 tggcctttat ccagaaaatc atttaattat aatattaata aaaaagaacc tcctgctggc
      541 gatcagcaca ctacactgcc ttgaaggtga caccaattat taccttttcc acggaactgt
      601 aagttttata tacattatat caccatataa tattga
//
LOCUS       KCLJ01000227             598 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 25554cal ultra-conserved element locus
            uce-4477, sequence.
ACCESSION   KCLJ01000227
VERSION     KCLJ01000227.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 598)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 598)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..598
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="25554cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>598
                     /note="ultra-conserved element locus uce-4477"
BASE COUNT          174 a          131 c          144 g          149 t
ORIGIN      
        1 cttgataaag ccctgcattg ttagtgcatt aaaggagcag agctgagcac acacttgagt
       61 cttagcgttt caggctgtaa agcacctaaa gcccaacttg gttgctttta ctgttgcttc
      121 ttgtctttgc gctgactctg ctctctaaat gcagccagag agcatctcca ggagagaggg
      181 aatggagggc gccaatgaag cggagatgta cttaatgcag acaccattaa taaatcactg
      241 atagttaaga tatagattgg gtgatgggtg gcagatggga aggaggaatg tcaaattgct
      301 tttctcatat agattattgg attaacaagg aagcagcggg catgtggcaa accagtgtaa
      361 caaattacta tcataaaaaa aaaagataga gctcatcgca ggctggtaat aatgccatgt
      421 cggccattag ctctctggag aggtacttag agcacaacat ccgtcttctg caaaagagac
      481 ggcctctgca acaccagagt gaaggaggcc cccatttgct tccccctccc cccctctgac
      541 actagagccc gtgctgttga agctacagca gctgtaatga ataatcacca tagctttt
//
LOCUS       KCLJ01000228             408 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 25661cal ultra-conserved element locus
            uce-1462, sequence.
ACCESSION   KCLJ01000228
VERSION     KCLJ01000228.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 408)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 408)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..408
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="25661cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>408
                     /note="ultra-conserved element locus uce-1462"
BASE COUNT          129 a           59 c           83 g          137 t
ORIGIN      
        1 cctagatcag aacatatcat tagctgtgct tcttagtgaa cctgactttt ctcaagaaat
       61 ttacatcttt ctctcatttt ctgttaaggt ttcttaccct gttttctcac ctaaagaatt
      121 ataatgaggt agagagaatg agatctatgg ggaaagcagt ggacctagag actaaaggta
      181 aaaggatgat tgatggtatg aaattaccat aaaagtacaa tcaggatcag attttaaaat
      241 gaatttttaa gcagcctaag agatactctt tgatttgtag tctggtggaa tggataatgt
      301 ctcattcagt ggataaagtt tctcactgtg tgacttgagc tttttctgat ctttctgact
      361 gggagtaaaa tggaaccaaa gcataaagtg gtttttaatg ctgaaaat
//
LOCUS       KCLJ01000229             711 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 25769cal ultra-conserved element locus
            uce-5925, sequence.
ACCESSION   KCLJ01000229
VERSION     KCLJ01000229.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 711)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 711)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..711
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="25769cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>711
                     /note="ultra-conserved element locus uce-5925"
BASE COUNT          205 a          161 c          148 g          197 t
ORIGIN      
        1 gagcctcctg aaacagcaac agcgcaggat ccgagcttgg agcacagcta gcactgttcc
       61 cggggttcct cagtagctaa caccaaggat gaccaggtaa ctgggcacat tctctatatg
      121 tttgatgata aatatcttta cagggaagaa agagggggac tcttcctact gccagttctt
      181 ctctgccccc tatggagcac agggagcctc tattctgcca gtccattctt ccacatccag
      241 tgcattatta tgaaccctcc agcacacaca gctaattaga gaaaatatcc tttctagcaa
      301 tttaaatgat tttggcattt tcaggagggc acatgtaata ttcaaattac ttccactctg
      361 cgctgccttg tcttgcctgg ctcatcttcc caggtgaatt tgtagtctct gaaatgctct
      421 aatttcccac acaagccgtg tcaaatataa ttttggtgca aagttggtaa ttatacgtaa
      481 catcagtctg atgttaaaaa cactgaaaaa tttagcaaga agagacgaat ggagagacac
      541 aagtctgaga ccaaggaacg aaaggcgtgc agccccctta gtatttgcgc tcattaatta
      601 ataatagcat gttttcagga actgaaagga tgtgtttcct gaactgactg gaattcactt
      661 atgtcccaat tacattgtct cagtgaagaa cttcggtcag gtcttgaaga g
//
LOCUS       KCLJ01000230             507 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 25878cal ultra-conserved element locus
            uce-3290, sequence.
ACCESSION   KCLJ01000230
VERSION     KCLJ01000230.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 507)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 507)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..507
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="25878cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>507
                     /note="ultra-conserved element locus uce-3290"
BASE COUNT          107 a          155 c          137 g          108 t
ORIGIN      
        1 ctcgtggagt gcctccccct tttcccccca ccttggggag caccaggaag gatcgctcca
       61 aaaccgcact catggcctgg ggatgccacc acaccaggag ggttctgtgg gagcgggatg
      121 cccctgccat gcctgctcct gcctggctcc cagcatccct gcatcccgtg gaggggttgc
      181 cgcgatggca gtgtaattaa aaatgcaatt aagcgctgcc acttagcaga aaagtcatac
      241 agtttgggga taattatctg acaatataac aagttgccca acattaatca ggcgctgatc
      301 tgctccggca gctgtgctcc cagctccgga cgctgcctta atggcatcct tcaagagaca
      361 gcaataaatc aggtccttac ggggcagcac gctggcccct gcctgctccc tgcctgcggg
      421 gtgtcagagc aacatcctta ctttgttcct gcctgagggt gctgagagag cagggcaggt
      481 tccaggggat cagccctcac cctaagt
//
LOCUS       KCLJ01000231             709 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 25989cal ultra-conserved element locus
            uce-4014, sequence.
ACCESSION   KCLJ01000231
VERSION     KCLJ01000231.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 709)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 709)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..709
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="25989cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>709
                     /note="ultra-conserved element locus uce-4014"
BASE COUNT          199 a          126 c          155 g          229 t
ORIGIN      
        1 gtagctcaga gttaacatgc agcatctgaa ggctttgcac agtgaaacaa ttacacaggg
       61 tgactactgt cattatttaa ctgtggcctg tgttgtatgt gcacaggaca gctcatcagg
      121 ggacttcatg agggcacccc actggcactg taatggttaa tgcctaaagc cttggctgag
      181 atccttctgc tgtttgatgg ctcaactgaa gcttgatgtt tatggtggaa attgtcttga
      241 tttctttaga tgagatgagc atccatggag tttgaaaatg tgttttaatt aagattctgc
      301 taaattctac cagacaccta cttggaaaac aaagcaactg aataattaac tctgatgaga
      361 gcagatgctg ctctaatgac aacctgttac tgctcaagtg catcattagt tgttttactg
      421 cgttctttta atatgtccag agatcctcag ctaatgaata tattggtagc aatgcaacta
      481 aaataattct tcaatgtgga ctgttgtagt caacaatcaa accaactgaa atagtgtttc
      541 agctggtctg tgttctgtgt gcttgaaagc aaacgcttct ttagttatcc ttgtgggatt
      601 attttagcca tacatcaagt gaagcttaca aattgatgag aatctaatga tgcatttatt
      661 tacagatgtg cagttctgtt ccctgttatg ttgccgaggg gtgagaaga
//
LOCUS       KCLJ01000232             513 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 26098cal ultra-conserved element locus
            uce-4943, sequence.
ACCESSION   KCLJ01000232
VERSION     KCLJ01000232.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 513)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 513)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..513
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="26098cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>513
                     /note="ultra-conserved element locus uce-4943"
BASE COUNT          186 a           82 c           77 g          168 t
ORIGIN      
        1 tattctatac atagtaattt attatttaat atattaaagg ctgcttaaga caaacaaaat
       61 tcctctacct cttggttttt tgaaaaattt actggatgct caatatatat aatattcaat
      121 agcatgtgag aataattttt atgcaactct gatagttaga aagatagata actcaattat
      181 tagatcatct atcaaaatat tcagatgtgt aagaggctac taaaaagatt gatgactgag
      241 aaagtccact gattctctag ccatcatatc cacacatttg gctagacaac atttttcgct
      301 gccttcacaa gcaagcttca ttacccatca ctccactgaa aagagtttat tatgaggctg
      361 ccatcttggc aagactatta tttagatgat aaatgttggg ggaaaaagtg tgtctagaaa
      421 catgagcttt ttgacagata aaacaaacag catctacatt tctaattaac ttaaatttgg
      481 catatacaaa tataggtcag taaagctatg ata
//
LOCUS       KCLJ01000233             739 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 26206cal ultra-conserved element locus
            uce-4672, sequence.
ACCESSION   KCLJ01000233
VERSION     KCLJ01000233.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 739)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 739)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..739
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="26206cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>739
                     /note="ultra-conserved element locus uce-4672"
BASE COUNT          199 a          141 c          167 g          232 t
ORIGIN      
        1 ataaagtaaa caggaattta tggaagttca agctttgcgc agcattcagc tgcaagctct
       61 tatcattcat gtaaatttta caaacaagga atgcagcagt tttcaatctt aatgaaacat
      121 aagaatgctt tttcattcag tatgactcac agttttgttt tgaagttttt gagcttctcc
      181 taaggttatg gagtggtcaa gcgaagccga acagggtttt tgaaatcagg aagcctgggc
      241 gctgtttcat tcaggggaga gagagggagg gagcctattc ctgtgtttga ttgaaaaata
      301 aaactgctgc tctcagtgaa cctttgaagt cccccagccc agtaattgtt tcacgacatt
      361 tgcagcttga ggcagcaaga atgtttgtgg ttgttttaaa ggcatctgag tgtggattcc
      421 atatgttttt attttcttcc ccacttggag cctcaagttc ttgcgcattg cccgatacca
      481 ggtcctagcc tactctatga actgtttgtg aaagagctga gtgaaggcat tgtggcccta
      541 agattcaagc gtgcttaatt cagagaaaat ctgtgaatgc ctgttgaggc aatagttgat
      601 tttagccgcg ctttatcgat cctatatttg gagtgtggct tactaaacac tgtacagttt
      661 gctttcctga acaaaagacc tcttcatatg gcctatactt agggcatgat actccaaacg
      721 ctcactatag agcatagtg
//
LOCUS       KCLJ01000234             853 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 26312cal ultra-conserved element locus
            uce-2069, sequence.
ACCESSION   KCLJ01000234
VERSION     KCLJ01000234.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 853)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 853)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..853
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="26312cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>853
                     /note="ultra-conserved element locus uce-2069"
BASE COUNT          300 a          166 c          187 g          200 t
ORIGIN      
        1 atctgaaacc tttcttggca tgtatctgtc ttcctgacac gtctacagca gatatctgtg
       61 ctagcgtgga taattatctt agtctacatt gctctataaa taaatgcttt aacaaacatg
      121 tcagagtaga gtttttacta caggcatttg gattatcaga gtaggacaca caaaatacac
      181 gtaacaacca aaaatttagt ttctttagca gcaaaggtga tgacactatt ttgtgaaatg
      241 caagtctaca tgagatgggt aaatcatgca aagcaaagca acagcagaaa aaaaaaatta
      301 aagcaagtaa aagctcttac tgtgcaacaa gctcgccaaa gttttcatca gggcagtatt
      361 ttcgaggacg gcctcgttga atatgacggc cacgtttaaa ctcttcatca tcaacagtcc
      421 aaaaggaccc aaactcatcc tctactctga taaagcactt atgcagtgag aggttggtgc
      481 gaatggcacc ctgggacaag agcagcagca aaggagatga agtggaaaca aagggacacg
      541 ggatcgggga cagaacagac atcaaataca gggaaaagga aaaagaaaat aaaatgcaat
      601 aagcataagc aaatggtttg tgagggttaa tatgcattgc cacctaaaag ctactagcat
      661 gtgatgcaac aaacaccaag caagcagggt cagggtactg gtgggcatac aaacagtagt
      721 gatgagatgt ttgtcttggt ttcccttaac tgagacaatg cgaaaccacc tgtggttggt
      781 ctaacaccag ctagcagcca aaagcctcta cgttaaactg taagcatgat ccgagctagg
      841 ctaagaagtt caa
//
LOCUS       KCLJ01000235             625 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 26420cal ultra-conserved element locus
            uce-7615, sequence.
ACCESSION   KCLJ01000235
VERSION     KCLJ01000235.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 625)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 625)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..625
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="26420cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>625
                     /note="ultra-conserved element locus uce-7615"
BASE COUNT          206 a          120 c          110 g          189 t
ORIGIN      
        1 agaaataatg ataatttaca ccctttctgc gagcaatcca gaggcgacag gagcaaattg
       61 atggagacag gactgggaga atcccaccct gtcagaagat gaatgagctg agcttgcatg
      121 atgtgaacca tggctgacag aagcgagggg gaatcaaaga gtttttgaca acgcacgctt
      181 cacagctctg accactgagg atctacatga ttatctccag acaaaataac tgtgagtaaa
      241 aggcttacat acacttaaat taaacacagc agggttttag taatctctgt ttgcatttta
      301 ctttctggaa attgcttgga ctgggaacat ttcatttaat ggcattttta gttacctttt
      361 gtacttctaa tgccatagtc taaattcacc ccaaattacc caaaaagaaa cttttgtcct
      421 ttatttttaa ttgctgtagc ttccttacca attttactaa attaaatgtg ttttaaaaca
      481 tcaccgtatt tgaaacctaa ttatcccaat ctctgaatga agaatagcta acaatacaaa
      541 ccccatttat gtaatttatt ttgcaaaagg aaataaatgg aatgcagttg cagtaatgat
      601 atacatgttt gcaattccac cctgc
//
LOCUS       KCLJ01000236             662 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 26635cal ultra-conserved element locus
            uce-6905, sequence.
ACCESSION   KCLJ01000236
VERSION     KCLJ01000236.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 662)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 662)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..662
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="26635cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>662
                     /note="ultra-conserved element locus uce-6905"
BASE COUNT          192 a          132 c          152 g          186 t
ORIGIN      
        1 cttgtcactt tgagcagggt aaatgggaga tgtaaaagca ctttgcagtg ttcagggaga
       61 tgagtgcaaa tggaaagacc atggcaagtg ctccctgcct gtgcttcaag gtaaccccta
      121 ccagcgtgcg ccgcctcctt gcaaatgcca tacagcgttt ttcactctct gctggaggaa
      181 aaagctgccc taagaaaagc agaatgaggg ctgatgtttt gaaaggtgtc caagagtaac
      241 aaaactcaac tctccagggc tgagttttgc ctcttgtgtt tctcaactag ggtggttgaa
      301 tgtgttacag acctatcaga aattttgcta caaatgcaca aatattaatc tacagccatt
      361 tcctttgctt tcttaaacat gaatgaggat ttttgtctct ttctccctcc ataaattgtt
      421 catggtcaga gggggcatgt tccgtgtcaa agtcttgacc gccaggatca aacaaaaaac
      481 ccttgtgaac tcagaagtgg agacaaataa atgactatta cttttttcct tttgcctgga
      541 gttaaacctt ttctctgtca acaatattga ctttgttcac ttggaaggaa acagagggag
      601 agagagagag ggagatttct ctagatgctg cacagaaaaa aaacattttg gaaggaggaa
      661 tg
//
LOCUS       KCLJ01000237             578 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 26746cal ultra-conserved element locus
            uce-5323, sequence.
ACCESSION   KCLJ01000237
VERSION     KCLJ01000237.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 578)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 578)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..578
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="26746cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>578
                     /note="ultra-conserved element locus uce-5323"
BASE COUNT          165 a          112 c          123 g          178 t
ORIGIN      
        1 ttatggtgcc taagattccc acctttcatt tttgaatgtg aggcaaaccc ttgccctcta
       61 acctcatccc tctttccata aagcttgtat gtaaaatttt catttagcat ctttagcaat
      121 cttccattgg gtttgaatag tacattttca tttcattcat catttaaaga cagataatca
      181 gaaagtcatt acatgggctg acaccgggcc ccgcgctcga ttgtgttgta attgagcact
      241 gcagagcgtg tgccagatct aatggataat gaatatatta tgtcagcaga actgcctctg
      301 caaagctcct ggggaatcac agggggactg cagtgacatg gagggtcaca gatgttgtgc
      361 tgatttactg atggagtgat tgtgtaatta ggtaatcaat ggtgggtaga ggactatatg
      421 tggacagcta attttataca aataaagacc atacgtagga ggctcatatt taggacagtg
      481 taagatgatt ttggtttggc ttaattattc ataaattctt aaccagcagc agaggtctga
      541 ctccaattca agcactacag cagcctactt tcacaaac
//
LOCUS       KCLJ01000238             354 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 26853cal ultra-conserved element locus
            uce-3836, sequence.
ACCESSION   KCLJ01000238
VERSION     KCLJ01000238.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 354)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 354)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..354
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="26853cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>354
                     /note="ultra-conserved element locus uce-3836"
BASE COUNT          116 a           57 c           84 g           97 t
ORIGIN      
        1 aagaaaagcc aattcatcag gtaagaaaga ctgctgctcg cactctcaag tcctgccaaa
       61 gacaaatggc tgtaaaaatt taaaatcaat cattaacaga ttagctgttg gtccaaagta
      121 aatagcaatc agcttattag gcatcaggca gagtgagata aaggggaaga gttattgaaa
      181 atgaggatgt ttgctggggc tgtgctgatg gagcagaaca gggaaaggct gtttctttgt
      241 tgctctaatt acaaatggaa aataacctac agtgctgaac aagttgagct ccctagctga
      301 attgaatgga gcatagtgct tatgttctac gtcatggctt gatttatctt gatt
//
LOCUS       KCLJ01000239             429 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 26950cal ultra-conserved element locus
            uce-3316, sequence.
ACCESSION   KCLJ01000239
VERSION     KCLJ01000239.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 429)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 429)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..429
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="26950cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>429
                     /note="ultra-conserved element locus uce-3316"
BASE COUNT          110 a           89 c           95 g          135 t
ORIGIN      
        1 gatcccagca ggaatttcca tccccagcga aatatctgct ggtggcacgg agtgtggttt
       61 tggtttagca gttccagcgg catcctgtaa tcacttacag cccttggaat gtatgggtga
      121 aataggagag atttatctgt tcatagttgt gatatgtaga caatgggtgt tcctaatgag
      181 gaacatctgc ttttgtgttt tcccagaaaa cattattcca ctatgaaaat gatactccca
      241 tccttttcag caacaccgca aagaaaatat gggccttttc ctttctttta tttgcttttc
      301 tttgggtcaa tctaatttcc cagggacact ttttactgac tgcggggttt gttctttaac
      361 acgtgaggta ccgtgctgga ggaacggccc cgaatgccag cagatactca aatgtgtaca
      421 gtaataaaa
//
LOCUS       KCLJ01000240             554 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 27056cal ultra-conserved element locus
            uce-2288, sequence.
ACCESSION   KCLJ01000240
VERSION     KCLJ01000240.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 554)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 554)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..554
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="27056cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>554
                     /note="ultra-conserved element locus uce-2288"
BASE COUNT           87 a          168 c          101 g          198 t
ORIGIN      
        1 tgtgtgcctt ttccagctgg ctgcgtgcac ggcacaggtc agctcgcctg tggtttagcg
       61 tggctgtggg aagctgccgg ctcctgtgtt tagctgcctt caggcctagc taagccgagg
      121 cagtgtctgg ctccccagcc acaatctctc gttagaaaga aattaaaagc cactcaattt
      181 tggctaatat ccctctgtag gcctttaact ccacctgtga ctaacccatt cataatagct
      241 ctgttttagt ggcttgggtt gatgtatcct cgattaattt gggaggagag cggcagggcc
      301 atatctcttt gtctccccct ctcttaatcc ctgtcctaca gtctgtcttc tcccactatt
      361 tcatctctgc tgtcacttct ccattcattc atcctcttct cgactttttg atgttttctt
      421 ccccaactcc tgtttgtctg ccttttccct ttgttctcca catgtccttt aaccttgctc
      481 tttcctcctc ctcttggaca gtattgcttc cttttcaact ttcctttctc atcccccctc
      541 atttggactc cttt
//
LOCUS       KCLJ01000241             680 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 27168cal ultra-conserved element locus
            uce-1928, sequence.
ACCESSION   KCLJ01000241
VERSION     KCLJ01000241.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 680)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 680)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..680
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="27168cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>680
                     /note="ultra-conserved element locus uce-1928"
BASE COUNT          223 a          105 c          146 g          206 t
ORIGIN      
        1 tatgaaatta gagagggaaa tcaaatcaat agtaggtcca gcaggagact gtgtgctatc
       61 cttggatctg tttgcaggcg tgctcgatgc atacagatta gctgataaat ggctgattca
      121 atagactggt agcaaacaca tgctttgcta gagatgactt tttaagtcat catacatcaa
      181 acagacagtg tcagcctttg aggataaacc agtgatggct tgttgtgctc tttgaactgc
      241 ctcggagacc cagagactaa gtgcctgaat gtttccctga atccactggg aggattgaaa
      301 gcttcaaaga gtaacactat cacatccaag gggaaatgca ttgattgaag gaaccagtgt
      361 gaaatagtct tttataatta ccagaatgct ggaatcgact ggtgttttgc tgagctatat
      421 tttatcttta ttggattaac tgtgacacag taggttatgt caaagggaat ctgcatgaat
      481 attaaaagta aatgtggtgt gaataataga taacttacat tagatgcaac agcatgcagc
      541 aatttttatt cacctatgta attagattaa aacaaatctg ctgaataaag tatattgtct
      601 tattataatc caaattcaaa agtatcaaga agttatgaaa gagggataat tgctgctctt
      661 tatgtggtta gtcacatata
//
LOCUS       KCLJ01000242             783 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 27275cal ultra-conserved element locus
            uce-1202, sequence.
ACCESSION   KCLJ01000242
VERSION     KCLJ01000242.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 783)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 783)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..783
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="27275cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>783
                     /note="ultra-conserved element locus uce-1202"
BASE COUNT          247 a          142 c          129 g          265 t
ORIGIN      
        1 tttatgattt ttctgaaaat aaaacaaatt taaactatat ttcagcttta cttcctagtc
       61 agaaggtaaa cttgcatgtt ttgttattga tgtaacttga aagatacatg ttaagccttt
      121 aaagtacatt tagaattaaa caggccacat tcaaagtaaa ttatctaaat agattttgga
      181 aagagaaagg agtctgttca ttttaatata ccttcagaaa tattttactt cttgatgatg
      241 acagcagctc ttactgacaa ctattaatac attataaaca ccccatcaga gttatataaa
      301 aacatgtcag ttttaaagag aacatctttg acagcaaatt ttctgattgt gaaacagctg
      361 tgcctccagt acaatgcatt aagtagttta ttccttttag atagttaaat tgtgcatgaa
      421 atgttgctgg cgcaagggct ccaaatctgg cctgattagc gaacatctgt tacattggaa
      481 aaattcatgt ctaccctaat tagctgtcag gctgatgtac atcagccctg atggtgaggg
      541 atcctgtgct gtttaagtca aacaggtttc tctcctatcc catcacctgc cctttcaaat
      601 cttttcctct ggtgtgttgc tgtaattaga gattgttgga aatacaatag agcaggttat
      661 ggtcagttat agtcccatct gtgcaatttt tttattccca caaaacttac aaactgacat
      721 aaagcagtcc tagcagtcag gctgaggtct atatattttt ctaatcctaa tccactcact
      781 aaa
//
LOCUS       KCLJ01000243             692 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 27385cal ultra-conserved element locus
            uce-227, sequence.
ACCESSION   KCLJ01000243
VERSION     KCLJ01000243.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 692)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 692)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..692
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="27385cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>692
                     /note="ultra-conserved element locus uce-227"
BASE COUNT          196 a          140 c          146 g          210 t
ORIGIN      
        1 acaaaggtat gggggaaata ttttctgcag agagagtgaa attgtggata attttagagc
       61 gtggttgagc tgcaggttga atacctaatc tatcgcccat accaaaagaa atactccacc
      121 tcgttgagtt agaagctaca ttttctcccc tgcagagaac tggacatttt ctatgcgccc
      181 gtgcgcccgt acgtgcacgc gtgtgggttt taaggtggca agtcaccgta cagatactta
      241 ttctctacac cacttccctt ttgaaacatt aaactgacac tggaactgac tgcacaagat
      301 tgcattttct cttcctaaac aacttgaatt gaaaggttac ttagtgtaac aatatttact
      361 tgcagaattg tgttgttacc aggggtataa tggatggtgg ctatgcaggt ttacgcaaga
      421 atgagtgaag catgaggcat tagccatgtg tttgacatgt ttcaaattgc tataatccag
      481 cattaaacac acccagcaat tcatgccatt tcttgcagcc ataatcttga ataaagcgtg
      541 cacaaccact tattatataa attagtatat gactccctgt tatagtcaca acagtgcttt
      601 tgtgtttatt ttgcatcaag acggggtctt ttatttgtac aaatagcagg atagcgcgcg
      661 gtgccgcaat taaacctcct cggtttatgg cg
//
LOCUS       KCLJ01000244             537 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 27493cal ultra-conserved element locus
            uce-251, sequence.
ACCESSION   KCLJ01000244
VERSION     KCLJ01000244.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 537)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 537)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..537
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="27493cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>537
                     /note="ultra-conserved element locus uce-251"
BASE COUNT          129 a          132 c          119 g          157 t
ORIGIN      
        1 ttctgtgttg ccggtcgggg tcgtctctgt gtcaagactt tgtattaaaa atcggtctcc
       61 agtgcccgtg tcttttaatt cattgcaagc tgtaggccat ttgctcacaa agcgcttgca
      121 gtaaaacaaa tgaatagcta aaatactcat ttgcatgatt cccatttgaa aacgattccc
      181 ctgaaattaa ggaagcggtt gtgaagatgg atgggcagat gagccgtgca attaatattt
      241 ttcggcgctc tctttaaagc cctcctaaga ctcgagcagc acatgctgcc tcccagacaa
      301 attgggtttc cagggctgcc atggcagcag cttgcccctt tattgtctcg cttacattat
      361 gcagtaatta aaactattta ccattcctac ttatctgcca tctgctgcca tgcaagtttc
      421 ctctccaaag ccatcttcgg agtcaagggc ggccacctgc tttcattaat aggtagcgga
      481 ccaggacgat tgcacggaga gtggcgtttt ctggcattta catctggcca ccgtgac
//
LOCUS       KCLJ01000245             503 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 27602cal ultra-conserved element locus
            uce-7022, sequence.
ACCESSION   KCLJ01000245
VERSION     KCLJ01000245.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 503)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 503)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..503
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="27602cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>503
                     /note="ultra-conserved element locus uce-7022"
BASE COUNT          152 a           93 c           85 g          173 t
ORIGIN      
        1 gcttttaaaa ttgatagtgc ctatattcac aagggattaa ggaagaaaat aagtatacat
       61 tttcacagcc tttaaatccc ataatttgcc actgaaatta atgtgtatca tcttgaatta
      121 ttatttgatc ttatatgtaa gtgctctgct atttaaaagg agtcttaata acaaatttac
      181 caaaggcagt tcaaagccct tttatccatt agtatctccc attttcgttt cattgctttt
      241 gttccttacc accttcttca tccagaaaaa taagtctgtc gcttttgaaa tggaaaaatg
      301 gtttcaaatc actggcaaag cttaatgact tctgactgct gagatatgtt aatttaagcc
      361 agaccaaatg ttcctcagct gcaaatattt ggtgttgttc actgggaact ggcaagattt
      421 atgagggccc agtggcaaag gctctctgct cacatgcctc acattacaat tgtttcacat
      481 gttagatgat aaaaggctgt ttg
//
LOCUS       KCLJ01000246             789 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 27715cal ultra-conserved element locus
            uce-6807, sequence.
ACCESSION   KCLJ01000246
VERSION     KCLJ01000246.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 789)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 789)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..789
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="27715cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>789
                     /note="ultra-conserved element locus uce-6807"
BASE COUNT          248 a          169 c          129 g          243 t
ORIGIN      
        1 tgtcaaatga atatttataa caagtggctt tcccttcaca aacactatag ctcaagcagc
       61 tcccattcat tatcgtattt aggaagtaca aacactaatt ctgtgattca gcagcacagt
      121 ctgttgtaac ttgccagaaa acaaggcctg caaaaaatct aggagaaacg tgctgttgcc
      181 tccagttttt caaatgtctc tcccagtcac aggaattcag tttcaatatt ctctctgccc
      241 ttcagcatag catgccccaa tgaaacagcc ggtggagttt attttgcact ttatcaatac
      301 agtgtaaacc agcatgtgct tacctccatg gggttactga acccaacttg tctgtgtgca
      361 cagacagcac tttggccaca gatgtgactg gttaactgta caagcaagga ggataaatcc
      421 acacaacaat acttcattca ccaaggaaat ctgctgtgga ttacagcttc tctatggtta
      481 cgtctgttct taatttactg cttttattca gttttcaacc ataaatgagc cccttatgag
      541 gtattcacta tgaagaattg acaactcttt ttatctactc gaaaaatatt tttggataat
      601 aatttatggt tacgaaatat tttaagcagt ttgaatagtt acattatatt ctttcagtac
      661 ttaatgatgc agtatcccct acaaaaatgg agacctggca atctatcgat ttcacatatt
      721 taaaacaaaa cccagcagcc tcggccatac agaaatacaa attttaaaac tgcatatatc
      781 atgggaatg
//
LOCUS       KCLJ01000247             650 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 27824cal ultra-conserved element locus
            uce-4211, sequence.
ACCESSION   KCLJ01000247
VERSION     KCLJ01000247.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 650)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 650)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..650
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="27824cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>650
                     /note="ultra-conserved element locus uce-4211"
BASE COUNT          199 a          155 c          117 g          179 t
ORIGIN      
        1 actgccagct ttaactttac cctcaacacc ctccgtccat gctggcactc tgcaccagtg
       61 gagcacaggc ttgactggga tgctaaatcg ccactatata ggtgtatttg gtaaacttgc
      121 caaaaagaac aatttttacc ccaacaggaa gatttcattt gatctgcatg tgactgggga
      181 gctgatttca tttcctgtaa aaccccctca aataccacaa agttacctga ctcagctgct
      241 tgtagaaatc aaattcagtc tgagataaca gctaatcatt tgtcacagta agaagcaatt
      301 ccctgaaatc ggaagggaaa acctgccgct tcaatccgca ggtctgtcag attgctagaa
      361 attacattct gctctgacta acctctgcac ttggattgct aacaacaagc agcccggtct
      421 atcaaaagag aatatcatac aaccaggaac agcttttgat ttgttctatt ccaataacct
      481 gagaaaagtt tatggacatg cattgctgcc tagacctcaa ttttcaccaa cctgcatact
      541 ggttggaatt tatagctccg catccccaca gtaatgtagg taaaatttac aggctgatta
      601 tctgctactt cataggaaga aaattagagt tgattttata accgcacaac
//
LOCUS       KCLJ01000248             590 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 27927cal ultra-conserved element locus
            uce-5102, sequence.
ACCESSION   KCLJ01000248
VERSION     KCLJ01000248.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 590)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 590)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..590
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="27927cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>590
                     /note="ultra-conserved element locus uce-5102"
BASE COUNT          200 a           96 c          125 g          169 t
ORIGIN      
        1 aattgcaggc tgcatttctt tgctcgtgtg ccctgcactg ggtaaaatgg aaaggcagcg
       61 ctgagaatgc ctgagcatat gaaaggctgg aagacagatt ttccaacaga acaattgcag
      121 ggtgtaggtt ttaggcaata agcaggtagc ctcgttctct caaaagaaga aagaaaataa
      181 tggaaaactg taacattcat ttggaggcct caaaggcata aaaaacccaa ttccaactgt
      241 tataggtccc tgcaggagtc tacaaaggaa ctaagctttt taagtaagaa aactagattt
      301 tggcccagag ggccctgtca ttgctgctta atagatgaaa ctcttttgat acaaatatgc
      361 tgtttacttc tcagcttcag ctttcataaa atataacctt tttatgattt acgacccctg
      421 aaaaagtgca ggatggattt ttagctctga attggttgaa tgtcaacaag aaaaatatag
      481 ataacatata gaaatagcag ggtgttaatg ccacacaaaa tgatgaaatt attttggttt
      541 agaaaagtta agtttgttct taaagttctt tctgagtgaa actgaggaaa
//
LOCUS       KCLJ01000249             503 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 28030cal ultra-conserved element locus
            uce-5041, sequence.
ACCESSION   KCLJ01000249
VERSION     KCLJ01000249.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 503)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 503)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..503
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="28030cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>503
                     /note="ultra-conserved element locus uce-5041"
BASE COUNT          179 a           83 c           82 g          159 t
ORIGIN      
        1 attgattaca taagtgggca gtggtggtcc tttcaagtat gttccttttg tttcagcttt
       61 acagtaaaat taccagcagc agtttacaat taagggaaat aataataact gcatatgctt
      121 tcatctgcac atacaattac aataaactgc ttgctttaat aggattgtga aaaatctatg
      181 tttgacccct acaaaaaagt aaacattctt gttctggata ctatatcatt atcacaacaa
      241 agggaaactc ctgaaatccg atgatttaaa catctggaga atgttaatca cttcaaaatg
      301 acggatgttt tttatttcag cttttgacag acacactcct ttcatagata gatgattatt
      361 tacataaatt acatcaccaa tgtgagtcca aaataacttc aaaggataaa gagcttaatt
      421 aaaaggaggc ctttgcattt cttttgttgt agaacagaga aggaatagaa gaatttgcaa
      481 aggcaaagtg aacaccacca ttt
//
LOCUS       KCLJ01000250             559 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 28136cal ultra-conserved element locus
            uce-336, sequence.
ACCESSION   KCLJ01000250
VERSION     KCLJ01000250.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 559)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 559)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..559
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="28136cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>559
                     /note="ultra-conserved element locus uce-336"
BASE COUNT          180 a          124 c           79 g          176 t
ORIGIN      
        1 gaagttcaga tgagttcaga tctattcaag ccctctcaat gtttccatat gcttgactca
       61 agtccaaaca tttaatcgta gctccaaacc caatgaagaa gcagagcagg gaattgtgaa
      121 ctctgctttc cagcactaag gacttgagca ttataatctg tcatttgtac tttttcatac
      181 taaaggtgac agtctaattc acatatgacc aacacccata aatcatgctg gggggaggaa
      241 atattcataa atccatatca aacagaaccc aaattatgac aaatgacatg gcagtcataa
      301 aattgcacaa gcacaactca ccaagtcatt aatttcatgg ccgtggaaaa taaacagaca
      361 catttttttc gcagccctaa taaattttaa aaaactcaaa gaatggtcca tctgcttcga
      421 ataattttta atttcctatt ctgtctcgtt cccattagct attccactga gatatttgct
      481 aaattctttc atttgcctcc tcccatctgt attcaattac tctattccca aatagagtta
      541 gtttttcttt ctcctaagt
//
LOCUS       KCLJ01000251             823 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 28247cal ultra-conserved element locus
            uce-2857, sequence.
ACCESSION   KCLJ01000251
VERSION     KCLJ01000251.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 823)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 823)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..823
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="28247cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>823
                     /note="ultra-conserved element locus uce-2857"
BASE COUNT          242 a          143 c          152 g          286 t
ORIGIN      
        1 ttatcacagc gtttaaaata aactcagctg aaagtggaaa cttaagtgga atcttttttg
       61 cagttgggtt tttgaagtgt taggacaggt tctaattgaa acactgaact tcatgtgcaa
      121 cagcctatga atataatttc tgctgattta agaatctgat gtcagggcag taagtatgca
      181 attagcttta gtttaagtga tagcaacatg ctgtaaataa gaatcttaat tgtgtttgca
      241 agattaaaat tcagtttcat tgttttttcc ccttgcttct ttggtggctt tgtggtatat
      301 tcgcattgct acctctaaat gaatgtcaac ttgttttacc tcgactgcag ccaatcgata
      361 cttcattagg ctgaattgtc ttgtgcccat gcaaccttga agctgtggct taattaccac
      421 ccgtattatg cagtggctca gagtgctgcg ctcagctgtg tcagtttcta acaaaagcca
      481 tgctgttgcc tgtatttagg aaaaatggac ttttgaacta cagaactata atattttcta
      541 agttaacaat tcatgatgat aacctttttt aaaacgtgta tgtcagtttt cagtaagttt
      601 acatttgaat aggtttctgc atattgcaaa acttcaaaag acgagtacct ttgcttttca
      661 tgttcaaccc atctttgatt taagataatt ttaaattaat ggcaaagtaa cattcatctg
      721 aaagagaaga caggagaaag tgcagtcaaa tggcaatcat gacaaatgac atctcttgtc
      781 tgagagtcat ttttcctcac tagactgatt tgtcatcccc act
//
LOCUS       KCLJ01000252             493 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 28360cal ultra-conserved element locus
            uce-3089, sequence.
ACCESSION   KCLJ01000252
VERSION     KCLJ01000252.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 493)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 493)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..493
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="28360cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>493
                     /note="ultra-conserved element locus uce-3089"
BASE COUNT          126 a          126 c          119 g          122 t
ORIGIN      
        1 ctcagaccca gcaggtctgg ctgctccctc agctgaaggg ctgaggtgtg agcagtgcat
       61 ggcagcccct ccccaaaccc agccgcagag ctgtggtgtc gtggctgtgc aggagatatt
      121 tgacgctcaa ggtagtgttg cccgctgcta tgccaattac tggatattaa tggcaggata
      181 gcatgcatat gcctaaactg ggaagcagaa ggttaataga cgaacagcac cagaagatcc
      241 catttatcag tttctattta tctctccttg ggaggtggca ggtttacagt aaataccttc
      301 tgtcctccta atttcctaat gatggggata atgatggaga atggtgaagt cattaactgg
      361 gacagcctct gtgcatcact ctgtcaacca catctctcca agacctgcaa tgaaaagtga
      421 taggccccag ctgttcacca gattccgttt ccccatgctc aaccccaatt gcaggcttag
      481 caattcacaa agc
//
LOCUS       KCLJ01000253             433 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 28467cal ultra-conserved element locus
            uce-1979, sequence.
ACCESSION   KCLJ01000253
VERSION     KCLJ01000253.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 433)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 433)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..433
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="28467cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>433
                     /note="ultra-conserved element locus uce-1979"
BASE COUNT          147 a           75 c           84 g          127 t
ORIGIN      
        1 ttacagaatt aaatccatat gccaacagaa aacaatgaag aaaacaaaac taacaaggta
       61 tccatttggc tttgtttgac tttgcctgcc agagaataaa atgcaaggct gggtgtaatt
      121 taatgcaaac cttggcctat cctggtcatg catatgactg accctcagtg caagaccatc
      181 aattttctat taaagatcag agagttgaca tatcaaagtc aacatctagc tgaataactg
      241 cagtaacttg ataataattc ttttgtggat ttcagagtgg cttttcggta aagtatcaga
      301 aaggtagcag ttttcaatcc tgacccaaca agatctgaat atgaaataaa ggatttgagc
      361 ttgatctccc catgatgtga ggatgaatgt tctggtaaat gttaacttag tgctctgaat
      421 agctcagtaa tag
//
LOCUS       KCLJ01000254             589 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 28569cal ultra-conserved element locus
            uce-4822, sequence.
ACCESSION   KCLJ01000254
VERSION     KCLJ01000254.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 589)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 589)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..589
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="28569cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>589
                     /note="ultra-conserved element locus uce-4822"
BASE COUNT          172 a          150 c          110 g          157 t
ORIGIN      
        1 ggcttcactc taggacaaaa ccacctatat atccttagtg tcttccgctc tttggggaga
       61 ccagaaaagg agtgtgctgc tcctgccaaa aactgaacag gcctccctca gccccaaacc
      121 agcttcctcc tgacccttct ctgatgcatg tactgctcct ttaaatgtgg tgcatttgac
      181 aagctccctc actctcaaaa gagtgagaaa ttttcattga ttgatttctt catggcttct
      241 taaacagata attaattcac cgtgaacctg cggacacacc gtcgtgagtc gttaatattg
      301 taaattcaca tatacttcaa taatcgcctg acccccccgt caccccgaaa aacagatagc
      361 tgtgcagcaa ggaggagggg aacgggaatc gattttcgaa gacatgaagg gatcacccag
      421 caaagggaag ctattgattc tcttttataa gacaccgcta taatatttat tcttttgtaa
      481 acagaattaa cccagcatca tgggtcattc ctatcgaaca actttcctca catgtgcaca
      541 gcaatgctga ttgtatcaga tgaggtagaa acatccaaac tgtaccacc
//
LOCUS       KCLJ01000255             381 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 28675cal ultra-conserved element locus
            uce-2667, sequence.
ACCESSION   KCLJ01000255
VERSION     KCLJ01000255.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 381)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 381)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..381
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="28675cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>381
                     /note="ultra-conserved element locus uce-2667"
BASE COUNT          141 a           81 c           65 g           94 t
ORIGIN      
        1 cagctccaac agaaagccat agccattaat ctagagacct ctgggagttc aggatcgtgc
       61 tgtaaaacct agaccctgcc aagactgcat cagataaagc catcaatgca ttgtaaaaaa
      121 gacacaaaac ctatttcatg ggctgcactg atcaagcaat tacaatcatt gactacatta
      181 agcaaagaaa cagcggggtg ccctataaaa ttgactgcca acttgaataa tcaatagact
      241 ccatgtagag taaattaaat aactgaaaaa ctatttggaa aagctgaagt taaaaagcca
      301 atctgtaatc cctcatccat ggaaaaacaa tcttgcatcc aaaagattct tttgcttgct
      361 ttcattgttg tcactgggaa a
//
LOCUS       KCLJ01000256             444 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 28782cal ultra-conserved element locus
            uce-6003, sequence.
ACCESSION   KCLJ01000256
VERSION     KCLJ01000256.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 444)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 444)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..444
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="28782cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>444
                     /note="ultra-conserved element locus uce-6003"
BASE COUNT          151 a           88 c           78 g          127 t
ORIGIN      
        1 tatttctttc agtaggagaa aacatgcttt ggctgcttct gtcacctggc tgaagaaaaa
       61 gttactgtgt gcagttaata tcgaacagca gccatctcca gatgatccct gctgcatcca
      121 atttctgcca aaatgctttc tgttaaacct ccatcaaaca gacacacggc gcacaaaaga
      181 aaacctcatc accaagggaa actaatccac cggtgcgcaa tgtaagcctg tcaacttttt
      241 attataagaa gtcatcactc atttcagtga agattaaaag tatgactaaa ttgagaaaat
      301 cctcttagcc attcggaatt ttaatagagg agaaaagggg gtgagtaaaa tttaaactgt
      361 atgtgcgtgt gtgcctatat atctatctat agtgtatgaa tcaaatatat aaaattacat
      421 atatatctcc acacacaagt tgta
//
LOCUS       KCLJ01000257             713 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 28885cal ultra-conserved element locus
            uce-3359, sequence.
ACCESSION   KCLJ01000257
VERSION     KCLJ01000257.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 713)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 713)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..713
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="28885cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>713
                     /note="ultra-conserved element locus uce-3359"
BASE COUNT          244 a          122 c          107 g          240 t
ORIGIN      
        1 aaatgcttgt accttaaaga gtgcatttca ttaccctata ctaaattcct taccgaataa
       61 tttataggat ttaattgtat acagatacac tcaggaccag actgctcaaa cataacaaac
      121 aatactattt tatggccatt tgaattattt atgtttccta atgacaaaaa ctcaccagtt
      181 ttgattttgg tactgaggtg cttgagaagt acacagtagt gtcattacca taataacttc
      241 tgaaattaaa acctgtctaa aactctacgg aaagctaaca tccagttcat taaccattcc
      301 tgttagtttg ttttcaataa tgcaaaaatg attagaagtt taatttgcta atcacctgtg
      361 ttttgactgg cagtggatat ataattctct gcagaagtct aaactagccc ttgcagaaaa
      421 taaaatatgc taatgcttta tcaagtctaa taatatgaat tcaatcatgc ctaggttaat
      481 cattgatgaa tccacaatta atttctcctt aactctgttt cattttagag acaatggtga
      541 taatgagtaa gaaaaatggc tatttgtctt tgagaaattt tagtgctgac ttaccaatca
      601 tgtggtttgc aacatgaact tggatatccc actcattgta gaaaaccatc tgacatttga
      661 tgcactggta ggtcttcttc taaagaaaca aggatagata aaatttactc aaa
//
LOCUS       KCLJ01000258             683 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 29098cal ultra-conserved element locus
            uce-4175, sequence.
ACCESSION   KCLJ01000258
VERSION     KCLJ01000258.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 683)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 683)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..683
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="29098cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>683
                     /note="ultra-conserved element locus uce-4175"
BASE COUNT          184 a          131 c          128 g          240 t
ORIGIN      
        1 ttgctatttg tatgttttgc ttgaattgag catttgtctc tgaaattaag cttgctattt
       61 ttctgtcaca catatagata cagtcaaagc ttgtttgaaa cccagttcag gatctcatct
      121 tttgcccttg gctttaactt atgtatgcct ttgtctgtat tgtctgtact gcaaacactt
      181 atgcatgttt ctgctattat atatagacta aatatgtcat aacacatgaa tgcaaaagga
      241 tcaaaaatgc cttcctactt tataatctgc tcagccagaa acagactctg tttctacact
      301 gccttttcct gcatgtcata ttatcatcag ctgttcttat atcccaaaag aatactaact
      361 actgatcgat tgcccggaca tgtctggcca tggcctacat gtgccctggg tagttcattt
      421 atttgccacg gtggatttgc tagagtggaa tttaatcaat agctaattca ttaattctgg
      481 tcctcgagta tgtagggatt gtgcagtata aaaatgactg gctggcttca gctttgattg
      541 aaatatgaca aacactacag ctgacagcct tggcaggtgc tgggctgaat atgaattttg
      601 cttgtttatc ccctgtgtgg acaaaaggac attttaatac atatctgtta gattataggc
      661 tcatgggata cctgagatat aat
//
LOCUS       KCLJ01000259             487 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 29418cal ultra-conserved element locus
            uce-5989, sequence.
ACCESSION   KCLJ01000259
VERSION     KCLJ01000259.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 487)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 487)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..487
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="29418cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>487
                     /note="ultra-conserved element locus uce-5989"
BASE COUNT          156 a          103 c           82 g          146 t
ORIGIN      
        1 ttccctttgc aagtacaaag aattcatgtg aacagctgtt ttcttggaca ataaggaagg
       61 gaaatcaact tcaaaatgtt ataagtcgaa gtgcttcttg gtatttacag gcataaagga
      121 ggcagctgca ttctgtccca gcttgaattc ataaacctaa cttgatcgcc ttctgaagaa
      181 tttatgaatc atggttaata atcagcttta ggcccttctg aggaaagaat cacattttga
      241 agctacaaag gtccgctaaa tagcccacgg gaaatgaccc tgcatcccat taaatataaa
      301 acctcactat tatagggctc tgtgtcaaag ggaaaacatt tcagtctctt ctcccttcaa
      361 gtgtcagaga gctccctctg cctaaatgct ttattaagat tgaggaaaca taccagattc
      421 ctgttactca ggaaaaatat tttcttctaa agaaaacaaa ccatttcctt tcttcattcc
      481 catatat
//
LOCUS       KCLJ01000260             732 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 29525cal ultra-conserved element locus
            uce-7361, sequence.
ACCESSION   KCLJ01000260
VERSION     KCLJ01000260.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 732)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 732)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..732
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="29525cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>732
                     /note="ultra-conserved element locus uce-7361"
BASE COUNT          220 a          144 c          146 g          222 t
ORIGIN      
        1 ttttttttta atcaaatagg tatccattag ggggctctcg aggtttaaga tgatcagcct
       61 tgataccaat ggcttcggag ctttacttcc taaccctttt ttttacagaa aaggtcacga
      121 atcgcctaca gtgatgaggt gcggaatgaa ctcctagggg atgacgggaa ttcctcagag
      181 aaccaggtag gatgctaatc aagaagccct agtgggtggc tggagggtga aggaggtcac
      241 tggcacactg ggcttctcaa gctgctcctt aacagcatta gcaacaactc atgtggaagt
      301 gatactgttt aatgcaaagc tggggtctta atcaacttca aaatgtttct tggagatctt
      361 acatttaacc ctttaacttg tgatcactgt ctgctatctc aaaaaaaatc ttttcttctc
      421 ttttctttat tatttagtac ttaagaaata acttgaaaca cgctgtttgc cgacaaagcc
      481 aaggtcttca cctcaaacac atgtaaaagg aataaaaaag tacataatgc agctttgata
      541 ataatgcagt ataattaaat caacactggc aggcaaaaca aatgaaagtg cgctctcaga
      601 attaggcagt atcccactca gtttccttgt gtgattcctt ctttaaccag attttctctc
      661 cttgtaccaa aaacacaagt tgtactaata agagtgtgct ttcataatgc atgttgtact
      721 tggatgcaga gt
//
LOCUS       KCLJ01000261             386 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 29636cal ultra-conserved element locus
            uce-5259, sequence.
ACCESSION   KCLJ01000261
VERSION     KCLJ01000261.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 386)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 386)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..386
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="29636cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>386
                     /note="ultra-conserved element locus uce-5259"
BASE COUNT           93 a          116 c           80 g           97 t
ORIGIN      
        1 ccttgctcac cacacctatg tgctggccca gaactggccg gatctcaggg ccacaggtga
       61 gcagggcagg cagtggcgtg gcaagggtta agtccagccg gctgttgcaa gagtccatta
      121 cctcccgcca cattacctca ttcatttctt atatgcggat ggtttattct cccatgagca
      181 ccctcgctgg cagacatggc tagtgtaaag tcccctccct cccctgtatt tctctatcca
      241 tcacatttaa cactctgaca gtaacagtct ataatgtttc tattctacaa aaccgctctg
      301 tcaactccag gcttccagag cagcaactga ggaaaataaa taacatcaac gccaggcccg
      361 acagtatcac agcttgcttt ctgctg
//
LOCUS       KCLJ01000262             601 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 29742cal ultra-conserved element locus
            uce-4808, sequence.
ACCESSION   KCLJ01000262
VERSION     KCLJ01000262.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 601)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 601)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..601
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="29742cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>601
                     /note="ultra-conserved element locus uce-4808"
BASE COUNT          190 a          150 c           87 g          174 t
ORIGIN      
        1 acctgccagc caaaacctga aaacctacaa ttaccagtgc agcaactcca attatttcca
       61 taaacatttt tgtttggtac aatcctcttt ctgtcaccaa taccctgttt ttacagatga
      121 gagccagttc tgtttatctt ctcaatgcat taactagttc cagtggcttt cttgaaagca
      181 taatgacttt tcctgtactc tagtgaaaat atatccccac aaatcaagaa gaagcaggtt
      241 cagactaagt ggttgagaag atttacattc tattgctaac tcagttatta ctctgctgaa
      301 aaccccatag catcaatata atgaatccct caacctctgc tgctagcaca atttttcttc
      361 ccaacctcat tggctcccaa ctttctgctt gaccttttac aatctgtgtg tggcagagct
      421 tcattacaac cttttaatga tgcacaaatg gcacacaaca ccaaggtcac agcacatgtg
      481 agaacttctc caacacctcc tgagcaggca aagagttttc atttaaagag acagttcagc
      541 actagtaccc accagaaaaa acaagtatct gctaagccat caatgaccaa gttaataaaa
      601 t
//
LOCUS       KCLJ01000263             558 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 29849cal ultra-conserved element locus
            uce-3850, sequence.
ACCESSION   KCLJ01000263
VERSION     KCLJ01000263.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 558)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 558)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..558
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="29849cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>558
                     /note="ultra-conserved element locus uce-3850"
BASE COUNT          218 a           91 c           96 g          153 t
ORIGIN      
        1 gggcattgtg aagataagtt tccatgacat ttactataac tcttttatat taccatctgg
       61 ctattttata tgtagcattc agagggaaat ataaaaaaaa tgatgtaaag ctgaaattat
      121 ttccttgata acacttgttt taaacaccat gccactaaat agctaaaaag tctcaaaagt
      181 gaatgcataa agcatataaa agctacaagc atacttacat aaattcttaa gattaaagta
      241 ataacttcta gaaaaaggtg ggagaaaaca tactacaata aatctatttg taatggtatt
      301 tgggttccag caactgcttt cattgttctc aagtggctta catataaaac aatagatttg
      361 atgtacgatt tcaatccctt atggaaaact gttctatcta caagcagcct gtcaaacaaa
      421 ataacaaaaa agcagctcag cactaagaag aaataacata cttaaaaaca aagtagggac
      481 accaaatcca tttcagacag ctttaaggac cagcttacca cggagaatag gatgcaggct
      541 tgggaaaggg aggagggg
//
LOCUS       KCLJ01000264             716 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 29958cal ultra-conserved element locus
            uce-2616, sequence.
ACCESSION   KCLJ01000264
VERSION     KCLJ01000264.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 716)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 716)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..716
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="29958cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>716
                     /note="ultra-conserved element locus uce-2616"
BASE COUNT          160 a          188 c          213 g          155 t
ORIGIN      
        1 aggagcgaga acatggaaaa agagataaaa cgggaggctt gggaaagggg ggaaaccaaa
       61 gaggtggcac ttgtcaccag tgctgcacta ctcacaactc cagtatccca caaactaagg
      121 acgactcagg agagtagctg atgggattga tcccacccca ccctcccatg ctccacatac
      181 atccccagtc cctccccgcg ctcttcccct ctcactcaaa cgtcagactc aatactggag
      241 agtttctcat aaacatgccc gttgctggag ccattgaaag ccctggggtt tttgttgtta
      301 ggcacacagg ggttggactg gttccctata cagatgtcct tctggaaacg ggctggcaca
      361 gccccatgaa gggctgagac caccggcttg ttggtggtga caatggctcg gaagtctggc
      421 ctggctttgg gccctcctgc caccacaggc tgcctgaaga aataagattt gctgccgtgg
      481 agcaagcatt ggtcatcccc aaaagtgggg atgaaagggt tttgggtgac ccggtcgggg
      541 tagagcgact tgctgagcat gtagccccca ctgctgccgg ggttgttgtg gtggtggtag
      601 ctggtggcgg gcactgagga cttgttgttg gcaaaggtgg tctcactggc tggcatctca
      661 aacatgtggg cgtaggggct cccctccaaa aagcggccct tgtccttgag gctgac
//
LOCUS       KCLJ01000265             528 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 30071cal ultra-conserved element locus
            uce-3153, sequence.
ACCESSION   KCLJ01000265
VERSION     KCLJ01000265.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 528)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 528)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..528
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="30071cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>528
                     /note="ultra-conserved element locus uce-3153"
BASE COUNT          135 a          108 c          128 g          157 t
ORIGIN      
        1 ttcagtgcct ctgattgtgc cattgtagga atgaggtgcc tccctctttc cccacagtgg
       61 actgcaaggc cctacatata ggtcacccca ggcaattagg gaagagctgc tggttttgaa
      121 agacaggcag gaagcccagt ttccaaatga gttatcaggt gagatggtgt ttggcctcag
      181 ccagagtgat tgacaggagg tctgcatgtt cacagataca ttatttaaac atggggagat
      241 ataagagatc ttctgcacta attacttcga aggctgtatt aatcacaaga cactttaata
      301 ctcaatcaat acctgcattt gtcaatgacc ttgtaaatct cctcacttct ctgctgtatg
      361 gcaaaagatt tgacatcttc ggttttgtgc agctgttgct cagtttttgc aaagtctgtt
      421 ccagtgttta aagttcagtt tcagaagtgg aaataagaaa aggcagctgt gtagctgtgt
      481 ttcaacctct gggccatcgt tgatgtgaac tgggctcctg ctgagggg
//
LOCUS       KCLJ01000266             824 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 30176cal ultra-conserved element locus
            uce-298, sequence.
ACCESSION   KCLJ01000266
VERSION     KCLJ01000266.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 824)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 824)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..824
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="30176cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>824
                     /note="ultra-conserved element locus uce-298"
BASE COUNT          234 a          189 c          142 g          259 t
ORIGIN      
        1 attggctcat tttctgaaac ctgagccttt aatagcatga agacctttta aaattcttga
       61 gttgctccaa attatttcca attaatacaa ggtcacccct ttcaatctgc aaggcaaact
      121 tttcctttat taatgtgttg ataggaccca gagtgcattc ctgtactccc agaatacaac
      181 tctgcagcag gtctgtgcac aattctgtac cagatgtgtc acattataag attttcagat
      241 tcagtttcag tctctctgtc gacagcctgt catctgttgg agtttatcat ctacccactg
      301 gtaccattca ttggttgcca aagcgaggca ggtcacagac aaatagactt agatctatgt
      361 tgccactaaa ttgaaatttg gcaacaatgt cagccagagc aaacagctgt tattttaacg
      421 acaagcaaac caattctgtc cttttaaatt atgttaatat aaaacagtgt cacttcacat
      481 atcagagagc tttcagttct ggagcccttt gaaggccacg cagactgaat ctattcagcc
      541 ttcatttctt tttgacaaac agatccaatg ttctaaaaat aacaagtgag taagagaggt
      601 ggaattcatg ataaaaaagc ctcctgacac tacatgcact gtaatctatc tcttccctgc
      661 ctacaagcag gcatatgttt gcaattgctt cttctcgtcc ccagttacca ttccattcct
      721 tgaggtctgg atttcaaact ggtgcagtta tcaatcacct agcaggcctt gtcaaacttg
      781 ctgaactgct ggcagccgta ctttcttaac atttgctgaa tttg
//
LOCUS       KCLJ01000267             383 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 30289cal ultra-conserved element locus
            uce-6451, sequence.
ACCESSION   KCLJ01000267
VERSION     KCLJ01000267.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 383)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 383)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..383
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="30289cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>383
                     /note="ultra-conserved element locus uce-6451"
BASE COUNT          133 a           60 c           58 g          132 t
ORIGIN      
        1 tctgcattga aaactgaagc aagtgggacc ttatctatat gcattacttt gatttcaaat
       61 tatttttagc atggctttta ttgtactcat tgttacgtac ataaatcttt aaagtaatac
      121 gttttgtaag aaatggtcat aaaaatttac agccagtaac ttttcccctg tcccttacaa
      181 tgatattcta ctaaaaccat taaatggttc tcattaatgc cctttaaatg attgtgtaat
      241 gacccacaat cgcttgtaag tgaacaacca ttaaagaatt accagttctt agcatgcttt
      301 taagtacagt ttaaatacat gggaggtaac gtacaatata ttagaaaaag tattaaattt
      361 gaaatggtaa aaacaggatg gct
//
LOCUS       KCLJ01000268             510 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 30393cal ultra-conserved element locus
            uce-2665, sequence.
ACCESSION   KCLJ01000268
VERSION     KCLJ01000268.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 510)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 510)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..510
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="30393cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>510
                     /note="ultra-conserved element locus uce-2665"
BASE COUNT          149 a           93 c          101 g          167 t
ORIGIN      
        1 tttttcatta aattatttga ttctgttgac acaaagcatg tacatttctg gacaaaatgt
       61 tataaaatat tctgacatat ttcaatataa acaggaacat tttcggtgat tgcttggatc
      121 taaaatgttt ttccacttga catttgttta tacttcctag gaaagaaact ctatttatgg
      181 atagctgaat aacacaaata aacatctgag agagctgaaa aatcagcttt gattatgcat
      241 ggaaatctac aatgtcattg tgtactcttg tgccgaattc tgattgcctg tttattttta
      301 cagagctgct ggtgagccca tggaagaaga gccagccttg tgaagtgcca agtcctccct
      361 gatatttcct gtgggtgaca tcattgtgta tgcaccctca gacatgtctt gtctgcttct
      421 tgggtggcac agatcagatg gaacataaac actgggcaca aaactcagag tagcagcttc
      481 acttgttctt tggatggact tgaaagagcc
//
LOCUS       KCLJ01000269             624 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 30504cal ultra-conserved element locus
            uce-3997, sequence.
ACCESSION   KCLJ01000269
VERSION     KCLJ01000269.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 624)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 624)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..624
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="30504cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>624
                     /note="ultra-conserved element locus uce-3997"
BASE COUNT          211 a          110 c           98 g          205 t
ORIGIN      
        1 tcaaagcgca atttgatggc aaactctgct tccttcagtt cagatctgtc ttgtcacaga
       61 cacagtagca tcatcccatt tgttccttgg tgaaatcatg aaacacagat tttaccagcc
      121 ataaattagt tatgcctttg catactccca gcaaaattgc aatcccaaac atgcagatca
      181 agattatcta ttgaaatgcc aggcgtaagt tattcattaa ctaaaaccat tctgtaattt
      241 tattgatata ttttgtggag ttcacatatt tttgtacagc aaacataaca ctgtaggcca
      301 caagaagctg cagcactatt gtttaatagc agcaaggtat attttataat cagggtatgt
      361 ggacaataaa tagtctgttt ctttggatgt gaatgtttaa aatgaagttc tgctgcagct
      421 tcataacgtg attgctattt tacagagctt atacacaaaa atatatatgc aatctttttg
      481 tctatatttt atacaaatac aacagtagtt tgtgaataca ttttaaagta catatacatg
      541 ataagcaact caatttccca tatcacagga tagcaaattt taaatgcaag aaacatatac
      601 aaattcagtc tggaatgcag ggtt
//
LOCUS       KCLJ01000270             568 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 30614cal ultra-conserved element locus
            uce-1474, sequence.
ACCESSION   KCLJ01000270
VERSION     KCLJ01000270.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 568)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 568)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..568
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="30614cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>568
                     /note="ultra-conserved element locus uce-1474"
BASE COUNT          191 a          102 c           90 g          185 t
ORIGIN      
        1 attaaagagc aagtttagaa atcagttaac ctaaaggtta agtgcagaac agcatttgag
       61 cctaaagtaa cttaaccctt ctttaaaaag acctaagtgt aaagaataaa gacagtattt
      121 ttccttttcc ttttttttaa agaagccaca tgaaatgttc tccgagttaa gttttaccat
      181 tcataatgaa tgcagtctcg ccattcaaat gcgaccataa gtacacagaa gataagaatt
      241 taattaaatg tagattaaaa ccaaacagga aaacacactc gctgataatt ttatcccatc
      301 ctctggccat attttttata cttccttctt gttcttcttt gggctatagc ttatcaacat
      361 gccgatagta ccataactca ttacatctga tggtgctgct gaaatgtgca ggcttggtgc
      421 ttgaatttca gaggcactta aaatgcaaag catgtaaatg tctatgttaa atatattagt
      481 gtggtaatgt tagtgaaaag aaagtgattt cttacaaatc cttgtacttc acatcataca
      541 ttatcattgc ccagtcacaa actggttt
//
LOCUS       KCLJ01000271             710 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 30723cal ultra-conserved element locus
            uce-6301, sequence.
ACCESSION   KCLJ01000271
VERSION     KCLJ01000271.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 710)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 710)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..710
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="30723cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>710
                     /note="ultra-conserved element locus uce-6301"
BASE COUNT          236 a          109 c          126 g          239 t
ORIGIN      
        1 gaggaaattg gagtgtcagg ataattctag tgtatgcaaa ctttacaaga tgaagcctat
       61 ccaaatgcta catccttaag catcatagta gaagattaaa actaatatat atgatcaatt
      121 ttacctacca tgaaaattca aagataggta tatcttgttt ttaattcaaa tttttacttg
      181 atcattttat cacacatgca tgcactccct cacaagcaca cgtctgtgta ctgaattgat
      241 aaagaaagaa ctctggttaa ataatccact tttgtctgac aacggaatca gttatagagg
      301 tgcaaatatg cagaaagcta tttggaaatg catcctcgta gttgtcaggt tttattatgc
      361 aggaaggtgt catgtttgtt acgaagctga gtgcagatgg cagagtggaa gaaatggatc
      421 actaatttta acaatgatta atgaacagag atagaaaatg aattacattg gactatcgga
      481 ggcaagaaat atttttgaga aaattttgac tcatctgctg tgctgttctc tgtaaattat
      541 tttctgaaat tctatatgtt gtcaacagtt gactgcattt tccattactg tctatttctg
      601 ttcttaagta cttttgtgtt attagagata cataatttaa aaataccaat acattcctga
      661 tacagtatga atgttccaaa ggcgccacaa atgtcctgtt tataatgctt
//
LOCUS       KCLJ01000272             704 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 30832cal ultra-conserved element locus
            uce-1224, sequence.
ACCESSION   KCLJ01000272
VERSION     KCLJ01000272.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 704)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 704)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..704
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="30832cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>704
                     /note="ultra-conserved element locus uce-1224"
BASE COUNT          221 a          136 c          126 g          221 t
ORIGIN      
        1 taacaatgct gtgaattagc actttctata ttttgtcttt gcattcccaa aaactgaaca
       61 aaaacatttt tagactctga tctaagcaag cagctgtaaa acttccattg ttcatgaaat
      121 cctgcatatg tacatcccca agtcccccct tccattcaat atatatgaaa atgcaattta
      181 ctgtacgtca aatgaaaaat gcagttttca aatgcatgac aacaggtgct agttaaatga
      241 tcagacacta tttgttacct agtctcttac tctcatttgc agcatgataa attgcatttt
      301 agcagagcac tgcgatctaa ggggtcttga catgctttta ttgatttgca taggttatat
      361 gcatgtattc ctgtttgtag gcaaatagtg ccacgagtaa attcaagtca ccatgcctct
      421 gtttcaagaa aattgcagtc atcacagggg agccaagatg gagtgaggtt gggtaaaaga
      481 gacacatgca gcccattgga atctcagaac ctctattaag atttataggc tgcaggattc
      541 ttttgggctt caacattatt cttagtaaac cctttctgtc ttcagctgtt tataaaaact
      601 ggcagcttta gcaaagacag aagcttacgt tgtaggtagc acaatttaac ataatagtga
      661 tagcctgtcc tctaaatatc ctgatactga atttgaaaga gaaa
//
LOCUS       KCLJ01000273             727 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 30938cal ultra-conserved element locus
            uce-7847, sequence.
ACCESSION   KCLJ01000273
VERSION     KCLJ01000273.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 727)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 727)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..727
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="30938cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>727
                     /note="ultra-conserved element locus uce-7847"
BASE COUNT          204 a          145 c          138 g          240 t
ORIGIN      
        1 aagaattagg actgagacgt aaaatttgca tgttggcagt gcagatgtgt gagtaattta
       61 tcaccatatc tcaccggcca catactactg atgattgaca ctgtgctgcc ggtataaagc
      121 attttaccat cagctctcat gatttctaac tgagagtata ataagccaat ttacagaaga
      181 ctacagactg tgataacttc atcagaggaa agcagataag cagtgaaccc tttgctaaac
      241 ctaaatacta atctgcattt ggttaaacaa gtgcttttgc agagacagct ggagtttatt
      301 cagtttcttc ctttatttct agagcctgag ggcatgttcc ctccagaggt tgtcatcatc
      361 aacagtacag ctgtacgtgt catctggaca tcgccttcaa acccgaatgg tgttgtcaca
      421 ggctactctg tctatgtaaa taaccagcag tacaagactg gaatgagcga gccaggatcc
      481 ttccttttgg cagatttgtc tcccttcacc gtgtatgata ttcaggttag aatatatttt
      541 ctaggttgtg tgacatactt acttatttaa ttctacttgg atttccagga aaaatattgt
      601 ttttatacac gttgtgtttg ccctgatgct tgtgcaagga atatattagt gtattttagt
      661 ttgtgtacac ttttcatcac aaatttccat tatctcacaa agtgtcaaaa gtccatttac
      721 tttccct
//
LOCUS       KCLJ01000274             751 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 31047cal ultra-conserved element locus
            uce-4919, sequence.
ACCESSION   KCLJ01000274
VERSION     KCLJ01000274.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 751)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 751)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..751
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="31047cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>751
                     /note="ultra-conserved element locus uce-4919"
BASE COUNT          191 a          169 c          198 g          193 t
ORIGIN      
        1 ttctactttt ccagcctttc agccaaattc cgatttccca ccaccatacc actatggggc
       61 tgaaatctct ccttgccaga atgcaggggt gtgggtctgc catagaagta gccaaggtga
      121 tttctttcaa accagataga ggggaaacaa ggttgggatc acagaggatt tattccaatt
      181 gaagcagccc ttgtgcttag tttttgaaaa acactagagc catgacaagg aagtaacaat
      241 tggaaacatg ggcaatttcc cggcacttct agggttaagg aaattgtaga ggggtgacat
      301 ggtgacagtg ttccctattt ttgtgtgttg ccagtagcga gaagagggaa actttgattt
      361 ctaatccgct ttggaggagg ctccgtatca gggctgcaca gaaacatcca gtcaagcagc
      421 tcctttatca taaaggggat tttaattaaa actgttcttg catcatgagc gaaatgagcg
      481 tcagtgccag ccagccctgt actgggcatt tatctccttc aaaccacatt accagtaatt
      541 gctgcattaa atcaaagtcg ggggagatta caggtctgaa ttgggcaggc ggccggtgcc
      601 agcgtgggga gctccgtgct gccgagccgc tgatacggga accccctcgg ccccccagct
      661 gggggtgaag gggctgctgg atcccaagaa gcccttctca ttaacctagg aggagtggcg
      721 gagcatttta agctgctgat gtttttctat t
//
LOCUS       KCLJ01000275             412 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 31159cal ultra-conserved element locus
            uce-1590, sequence.
ACCESSION   KCLJ01000275
VERSION     KCLJ01000275.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 412)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 412)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..412
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="31159cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>412
                     /note="ultra-conserved element locus uce-1590"
BASE COUNT          129 a           72 c           70 g          141 t
ORIGIN      
        1 attttatgat agctggtgat attgttgatc acattttaaa aattgagagt tagaacgata
       61 atatatactg caaaacacag attttaaaat ggttgttttt ccaatgcctg caaaattgtt
      121 ttattagggg actgcggaac acctgcctta aaatgtcgtt cagaacatct cccgaatgtc
      181 gttttcctta attgacttgg aaatggccca aatgtattgc tgaatgcagt ctaattaata
      241 ttaataataa atgccattat taacatcaaa gaacatctgg tgctcctgtt tactctgaag
      301 ccttatatgt aacacatttt gtggctgttt catcttgcaa acattgtgca gtaaacagtt
      361 tttgccatgc aggtcaaaac agacccctgt ccaagcataa tgcattatat tt
//
LOCUS       KCLJ01000276             593 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 31267cal ultra-conserved element locus
            uce-134, sequence.
ACCESSION   KCLJ01000276
VERSION     KCLJ01000276.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 593)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 593)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..593
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="31267cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>593
                     /note="ultra-conserved element locus uce-134"
BASE COUNT          187 a          107 c          115 g          184 t
ORIGIN      
        1 gtcttgttga ctgggaactt aatcaagtta ctattgagtt cttgtatgca ttgcttcggg
       61 tgactgtttt acttgtagaa ttatagctgt gaccaacgtg aggaaattag ctctggacac
      121 aagttttttt ccccctacat gtgaaaatat ttagcaaaca gtgacaatga tggaaaacag
      181 taggaaacaa aatgttctac attagtataa aacatgaaaa atgcagcaag gaccctcagt
      241 ggtacaacat gtgttatgct ggctggcagt ccattaggct tgatagacat ttcacttacc
      301 taagtcaaat ataacagtct agtattcatt aatataagaa gggggttgtg gaatcaagcc
      361 taccatctgg ttagaacgac agaataatct acaactcatg attaggtcta aggagtggaa
      421 tttcacttta atctttttca ttgctcgaaa tttccatctg cgcagtacgg cacatcattt
      481 ttcttcaaga caaatgtgct gtttttcatg ttccaaaatt agatcagaag aaaacgatta
      541 atcatgtcat ggcctgggaa aggaaacaaa gccctgatat ttctctctct ctc
//
LOCUS       KCLJ01000277             535 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 31370cal ultra-conserved element locus
            uce-6458, sequence.
ACCESSION   KCLJ01000277
VERSION     KCLJ01000277.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 535)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 535)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..535
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="31370cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>535
                     /note="ultra-conserved element locus uce-6458"
BASE COUNT          177 a           88 c           75 g          195 t
ORIGIN      
        1 aagatacact ggttcttaac ttgtacatat agcattactt ccatggaaac tgtgtactgt
       61 attattccca gtagtaaagt tctagaatac atatagttta tctctgacac accaaaaatg
      121 aaaatatgag ctgctatttc actaaagtct gagctccctt cccccatcca taagcttgat
      181 gctttaactt catctctcat gctatgggga atgaattaca gaagcaatct atcctaattt
      241 gttaacttat tcaaataaca gttattatac ttaactatgc taaagattat ctttttggtg
      301 gcagattgtt tattttttga tgaggctaat tactgatttt ccaaaggtaa tttacattta
      361 ttactaatac atcttttaaa atgtgacaga taaatgttgt tcccataagt gtattatgaa
      421 aaaagttact atttaaaaac acattattta atttgaaaga taaatggcaa acaccattat
      481 ttttcctgaa gcacctgtgc tgtaagctca tttaaatgtg taattccatg tgtag
//
LOCUS       KCLJ01000278             675 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 31480cal ultra-conserved element locus
            uce-6804, sequence.
ACCESSION   KCLJ01000278
VERSION     KCLJ01000278.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 675)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 675)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..675
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="31480cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>675
                     /note="ultra-conserved element locus uce-6804"
BASE COUNT          177 a          100 c          141 g          257 t
ORIGIN      
        1 tcagtataaa tgtatgtaaa ttttactgcc tgctctcagg ggtagtgtca cactaggtga
       61 ttttactagt cagtgtaatg attcttttgt actgcagctc cttttaagac gtgatttgtt
      121 ttcagatgtt ggtactggga agtttttgtt gtttagctga tatttagaac ctgtctacca
      181 accttttcta cttgaaacta ggggtactta agtattgctc tctttcataa aattaagtca
      241 gtaattactc atgcgttctt cagtggtagc tgcttagcaa cgtgttttct gtggataggt
      301 tggatcaaag tgctggcctg caggttgttt ttccctttgg tgggatgaag tgcagttgtt
      361 ttgatgttag gtttgatgga tttgtttgcc actgcattca ttagcttcac atcaaaaaac
      421 tgacaggctg ttaaatgaaa ctttggctta gattttcagc ttgactgttt caagacctat
      481 gtgaagatat tttgtttttg tgctgtagca gcctcaagca gttatgactg tttcaaaagg
      541 aagaaaattt aatatcttga tttatttagg tacaagactc attgtcttga agatagctat
      601 atccagctta tgttatccaa acagtatata tttggaaata tttgagacac attttatcag
      661 aggaaaaatg atatt
//
LOCUS       KCLJ01000279             572 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 31591cal ultra-conserved element locus
            uce-6926, sequence.
ACCESSION   KCLJ01000279
VERSION     KCLJ01000279.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 572)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 572)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..572
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="31591cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>572
                     /note="ultra-conserved element locus uce-6926"
BASE COUNT          169 a          109 c          169 g          125 t
ORIGIN      
        1 gaccgctgcc tctggtgggc aggtattttc ctgatgttta tgaacctact tgcaagcaaa
       61 agaaggggaa tgaaaacagc tgatgaaggc agagagagcc cttcagcctg tgtcacccca
      121 aagatactgc tcgtgcagtc agggagctgg tggaatgtag gagaaagaaa aatagaaaag
      181 gtagaaacga aaatatttga gagatgaaaa gaaattacca tacggcagga tcctgttatt
      241 caacctaatt ttcaaaggac tgcagctgtc gcactgagat aatctgttaa ttataacagt
      301 cattgtgttt tggcaatgga agcaggctct aaacaaggca aggtagtgtg gaaaagagag
      361 gggaggcacg gctgtgtcaa aacgcatgtc agatgctagc ttgaaatcta ggtgggcgag
      421 ccggccggga ggagggtccc ttcccagcag gctgagctgt gccactgccg gaaggaaggt
      481 ggaagcatct ataatgccct gtccagtgtg aggctactcc tcttgctgaa tctaggcatg
      541 cattgaccag aggaagagct ttgaggggct ga
//
LOCUS       KCLJ01000280             731 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 31701cal ultra-conserved element locus
            uce-3412, sequence.
ACCESSION   KCLJ01000280
VERSION     KCLJ01000280.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 731)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 731)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..731
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="31701cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>731
                     /note="ultra-conserved element locus uce-3412"
BASE COUNT          207 a          146 c          155 g          223 t
ORIGIN      
        1 gatctgacag aatttctcca aggtgcatag agatcttgga tggagtttct tcttagtctg
       61 aaagctggag ataaaattgc atgcaatgag tcagttaata cagcagggcc cttctccaga
      121 aacctggcca gcccttccca ttacagagct agtctttggc tagctctcca aaggctcagt
      181 gactgtgtac attaaaaatg ctatcaccat tatgggctct tcactaaagg tacaagagca
      241 tgacaaatat atgtaatttg caaattggct ggtcttttgc aataatttag agacactagt
      301 tagaggcaat agaaatctaa caattactga tgtttaaggt ttgcattgtt gctctgtgaa
      361 tatttcatgc ataaatgaac ttccctggac caactgctgt ttctgatgag gcgctctgag
      421 gctttattgc caaatacaca gcggggctcc cccaatgagc cacataacgg atgatgcatc
      481 accttcacag cttaaataat gcagggtatc tgcattttat agagtggtgg tacactttat
      541 ttacatatca actgagtggc caggctgaat atgaagaaat ttgtgaagga aggcactttt
      601 aatatttcat attagtgagc atcctgcctc ggctggctga ggtgggagtt gatctgcctg
      661 attatctctc ccttcatgca aagttgatgc aattttccca tttttgagaa cttcttcagc
      721 attactgaaa a
//
LOCUS       KCLJ01000281             688 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 31811cal ultra-conserved element locus
            uce-7841, sequence.
ACCESSION   KCLJ01000281
VERSION     KCLJ01000281.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 688)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 688)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..688
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="31811cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>688
                     /note="ultra-conserved element locus uce-7841"
BASE COUNT          228 a          129 c          111 g          220 t
ORIGIN      
        1 ctagaaacag tattatttgc taaaaatgca gtagctgcca aaagctatga tccatctaaa
       61 gcaaacatgt ttaagatgga aatagagtgt taatgctgaa gaaagacaga attgagtata
      121 caagttttca aattgtggaa gcaactgcag tacaaagtta atttgttttt catcttcctg
      181 agcttcattg catttgcaga taagcaccta aattagagag aagtgcatta agacaataac
      241 agaagtaatc aaatttcaaa ctttctaatt aaacctcttt ttcctgcaga aggttattgg
      301 gaattcaaca ctagccttgg ttcacatgat agaacaatgg gaaaattttc cgaatggttg
      361 aacgctaacc ctgacaagtg tggagagcca actacaatac attatatggt agcataacct
      421 gccacccacg ttgctgagag aacagctttc aaacacatgc accgagctgt aaaaccacaa
      481 aatcccttat tacacattgt cccttactta aggtgaaata cactattcct ccttttacaa
      541 atcttggagt ttttttaaac cttcatctct gaagtttatt tagcagcttt tttcagactt
      601 tattttccaa atgccatttt tcctgttttg ttttctaacc aaaataaaat catgttttta
      661 tagtacacag tgaagcctgt tgtgtctt
//
LOCUS       KCLJ01000282             784 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 31922cal ultra-conserved element locus
            uce-3958, sequence.
ACCESSION   KCLJ01000282
VERSION     KCLJ01000282.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 784)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 784)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..784
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="31922cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>784
                     /note="ultra-conserved element locus uce-3958"
BASE COUNT          201 a          202 c          179 g          202 t
ORIGIN      
        1 atctgcatga aaacaggaat tgctaattca gtggccaaag tgcatcagga ccctaatcta
       61 aaacctccca atccatccag ctgtctggca tttgctatta tagggcacca acagagaaat
      121 gaggctgtgg ctttatcact gcaccctggg tgacaacttg attttctgct ttcaccgcag
      181 gcagcagcag cccaacatga tggggctgtt aatttgtgca tttcatggtg tctgtcaggg
      241 ggccgggaga ggagggtttc aggggaaggg aatggagcat gtcccagcct cggaagcacc
      301 tgtctgcatt gacggcagag agcacttctt attagcgtgc aggtctctaa atgcagccct
      361 gggatgacag cctggcattc ccagcaccca cacagtgtga caggcgcagg cagccggtcc
      421 cattgtttgc ccttgatgag catgtcatta atggaaatgg aagaaagtga gggccacatc
      481 agtattcaaa tagcctccat cctctctgcc attcaactac ctggctcagg cggctgcaga
      541 tttccttctg cagctcctct tacacgtttc cacagattta ttcccattgc atacaaatcc
      601 cctccatgtg gctctggctc catgacatac acaatctcca gcatcatcaa aaataaagtg
      661 ggtgttcttc cccttcctcc ctttgtgaat tgcttaagta ccattaccaa atacttgcta
      721 tttacaatcc aggaaatgga agatgctatt catttaaact tgaagcatca agcaaggggc
      781 tgat
//
LOCUS       KCLJ01000283             640 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 32034cal ultra-conserved element locus
            uce-618, sequence.
ACCESSION   KCLJ01000283
VERSION     KCLJ01000283.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 640)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 640)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..640
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="32034cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>640
                     /note="ultra-conserved element locus uce-618"
BASE COUNT          242 a          129 c          112 g          157 t
ORIGIN      
        1 tttacatttt cagactttaa aacatattca aagcagcaat agacactagt ttttcctcta
       61 aacgcccaaa taattaccgg ccatgggccc aggtaggtac ctgcactgta tatagaattt
      121 ctacaaagaa aacctgccca ttaagtagcc agtggctgtt aaacaagcag ccctcgccag
      181 taagagctgc acccagggtg ttgctatagg aatcaaagca tagtaccgtt gtcccaacag
      241 ctctacacaa actttacaat ttgaaacagc agctagcatg tcagtccagc atgtcagtga
      301 attgtgctga ttaaattaac atagagtaca atctcacaat atacatcaca aacaaattac
      361 aatgtcagga aataagagtt acagtaagat aagttatgta gtaacagctt ataagcttgt
      421 cttaatgtaa taaaaaaaat tttacatggg aaatacaata atgaatgaac ataaatgcta
      481 agcattctag tttgctacaa gctgaagaaa ggtacaagtt tctggaaagc aaaacacaaa
      541 aggaagacaa acggagaatg cacactagca ggtctgcaat gtgcagcata caaacagtta
      601 aatatttgca cattccccat attccaagag caccaaggac
//
LOCUS       KCLJ01000284             800 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 32141cal ultra-conserved element locus
            uce-1368, sequence.
ACCESSION   KCLJ01000284
VERSION     KCLJ01000284.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 800)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 800)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..800
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="32141cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>800
                     /note="ultra-conserved element locus uce-1368"
BASE COUNT          305 a          119 c          164 g          212 t
ORIGIN      
        1 agtatcccaa ttacataata tggtatatta aaataagtct cccttaatgt tgcgttgcaa
       61 agggtttgga gtccaggaac aatgttggaa tagggacaga gtgacctttt aaaaaaatga
      121 aatgaaatac actttcattt tccagaaata tgcatgaaag taaaaacttg acagcatgga
      181 agaacataag caaatatatc tttttatttg aagataaaaa gaagcagggg ctagataggg
      241 aaaggaaaaa acctgtgaaa aaaacggatg atgcagtttt tacgaataag cagcttaatg
      301 tatcttggca cccacagtaa gccttgtagg agctcaaagt gcctcaggca atctgtgagc
      361 agaatagcaa ttttattact ttgtcattaa accaatttca cagcagtatt gtttgttaat
      421 gagcagcggc aaacgagcga agatgtcaca cactggaata gcagtgagat ttgtgaccca
      481 agctcagagc actaagatgg aaagaccatg gctataaaaa aggaaatact ttgggatgaa
      541 atgcaaagtc tatacagcag agcttgtgtt tatgagctac cattttgcta agagctgtga
      601 gagaaataaa ggtctggaaa tatgcagtta aaacagggcc tataaaatta aaaccaaatt
      661 aaagtatagc agaggattac tgcacaggct gtactctaca aaatatattt taaaggtgaa
      721 atctaaatca gttttgtttg aatttggttg gtatttataa aattcaataa agccatacca
      781 aattcaaaac caaagcagca
//
LOCUS       KCLJ01000285             419 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 32251cal ultra-conserved element locus
            uce-5332, sequence.
ACCESSION   KCLJ01000285
VERSION     KCLJ01000285.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 419)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 419)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..419
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="32251cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>419
                     /note="ultra-conserved element locus uce-5332"
BASE COUNT          102 a          109 c           72 g          136 t
ORIGIN      
        1 ataaatccca aacttttccc attcacctcc aactttggct cttgctgctc tggagccccc
       61 ctctcagcag cagtgccctg accctcttga gctatattat atcattccat tttgacacct
      121 tttatcaaac tttaatgaaa tgacccaggc aaacaaattg tcattaaact ttccatcact
      181 ttgtcccttg gtatcgtctt ttataaattg gacagcaaat gttgtattga tcttctcgtt
      241 cttgcagctg aacttgaaat gacccagact gcttgttgtt tatggcctgg agttgctttt
      301 ccttgacatt tccatcccca gcatgacatc tcttttgttt ttgtggagat gaatgaacaa
      361 gacattcgat accgagacat cctcggccac ggcaacggag gcaccgtcta caagtgagt
//
LOCUS       KCLJ01000286             566 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 32357cal ultra-conserved element locus
            uce-4539, sequence.
ACCESSION   KCLJ01000286
VERSION     KCLJ01000286.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 566)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 566)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..566
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="32357cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>566
                     /note="ultra-conserved element locus uce-4539"
BASE COUNT          179 a          112 c          108 g          167 t
ORIGIN      
        1 actcattaaa attctctgca catctcatgg actgctgtag acagtgtaat aaataaatct
       61 atgagaattg aataagacct gggaaaggaa agcgctgtta ttctgtagtt atagatatac
      121 aaatgtatat tacttatctt caaaaagcca taaagattgg tgttcatatt tgctggtaag
      181 tcaatctttc tttcagacat caagagatga cctcttaaga cccaaagatt tatcaagtca
      241 gcagtttatt cccttaggcc accatcttca gcctcttccc cttccagtca cgtctattga
      301 aggactttgc aaagccccat gaggaaatgg actaatctac tgctttctaa aggacaggaa
      361 tgatgcctat cctgcctgca ctttatggga tgagaaagct aataaaggga aggagactac
      421 atctattcgt gaaagattca gtgtgatgtt tgtgttataa cagacagagt tggagtgctc
      481 cagctgtcaa tcagaaaaga agcattgtcc cagcttcagc agacactatg atcattttac
      541 tttgtgggca caaaacatct ctacat
//
LOCUS       KCLJ01000287             552 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 32466cal ultra-conserved element locus
            uce-6094, sequence.
ACCESSION   KCLJ01000287
VERSION     KCLJ01000287.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 552)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 552)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..552
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="32466cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>552
                     /note="ultra-conserved element locus uce-6094"
BASE COUNT          159 a          120 c          107 g          166 t
ORIGIN      
        1 gattaaagta aatcctagta tttttctgca tgcctgcccg ctccctggct cccagagact
       61 gctgggtaac tgcctattat cccgtggttc cacttcagtg ccctccccaa taaaactttt
      121 catatcctta taaacgaact agattgccgt gttataaaca tttacactgt gctaacagat
      181 catctccgca catcagaatt ggctaaattc ccttttccag atgaatatat tgaaggagat
      241 tagagatatg atagcttttc agattgctga acccagagaa attagtttag tgagcattta
      301 cagaggctaa attggaacca ttaaatagtg gattaaattg atggtacttt cattgtctgt
      361 ccttcggtac tgctgtaaaa tcaattagcc gtcactattc cattctccat atagtgagat
      421 tgtcagcctg gctaggagct gcagagcctc acagcagtag caagcagtgt gaaaatacac
      481 ctattaggtg atgtggcatg aaataacatc atagggcaga atgtcccagt gagatttatc
      541 ccagccttat ct
//
LOCUS       KCLJ01000288             665 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 32576cal ultra-conserved element locus
            uce-4552, sequence.
ACCESSION   KCLJ01000288
VERSION     KCLJ01000288.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 665)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 665)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..665
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="32576cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>665
                     /note="ultra-conserved element locus uce-4552"
BASE COUNT          181 a          142 c          143 g          199 t
ORIGIN      
        1 gctctcttct cacccggagt ttggctgcac agagttttta tttgcacaca gttgtcctta
       61 aaaataataa gtgactattt gcctgttcaa agccagaaac aagttgacca attgctgctg
      121 tgttttactt cagggtatcc atctaaaggc agggagagag aatcaggcta taatggtttg
      181 cctggctcga aaactccatt ttggaccgcg gagagtcata tttcagagag tattgatcac
      241 agtgcagttt gtgtttcctc acgtccatga tcctgtttgc agccctgtaa aataataaca
      301 gtactcatgt cagtaaggta attaccattg atctaacaca ctgtgacaaa tttttcagtc
      361 atgccacttg attcatactt aaagttatgg cactgctgac tgctccttaa ataattgaag
      421 gatgcccttt gtaaatcagc acactcttgc caaaaagtgg cagtttcttc tttgttccag
      481 gccttgtttc ttagcttcat cagggatttc aaaattaaac agacagcttt ccacagccca
      541 catagttcac acttggagca aatatcatct gagctggcaa atcacttatg acacctttgt
      601 tcgagaaaag cgggggcaac agggaagatc agagtctctg tggtcggggg gttgctagca
      661 ggtgg
//
LOCUS       KCLJ01000289             682 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 32687cal ultra-conserved element locus
            uce-2999, sequence.
ACCESSION   KCLJ01000289
VERSION     KCLJ01000289.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 682)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 682)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..682
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="32687cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>682
                     /note="ultra-conserved element locus uce-2999"
BASE COUNT          208 a          112 c          116 g          246 t
ORIGIN      
        1 ctctttggag taaaatgtgt gaattacttt tattgttgca ttccttagta tccatatttc
       61 cttcttctgc accttatttt acacatttaa tttaaatgag agcaaatgtg ttcttgctga
      121 atgttgttgt atataacaga actatgatta actgtatgaa taattaccag ttgcaactaa
      181 acaattcaga tggatagttt cattaagaaa acaacatggg gtcattataa ggttctggtc
      241 gctgccccca atcttaaaaa aaatatagtt ctctgaacca ccaatctgaa ctggtgataa
      301 aatatcccaa gtaggctcac attaagctgt ataatatgca ggctgcttga tttgtattga
      361 atatgtgtct ggtggctgga acccactgta atgaactagc ccacaaatca cagcttaatg
      421 ggaatctact tatacatatt gcttaattaa aagttgtgag cttattaaca tgtgtctttg
      481 gcactgagct ttggggatgt aatctctgtg caaataagac taggttgtaa aagttttata
      541 gattgacaat gatattaaat tccatacctt aataacccat cattttctca aagtgtggtt
      601 cctattctgt atttattcaa agctgtgaca aattgtttgt ttgtaatcct ttactgtgta
      661 ggattttgct ttatctcaaa ac
//
LOCUS       KCLJ01000290             631 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 32795cal ultra-conserved element locus
            uce-6282, sequence.
ACCESSION   KCLJ01000290
VERSION     KCLJ01000290.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 631)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 631)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..631
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="32795cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>631
                     /note="ultra-conserved element locus uce-6282"
BASE COUNT          193 a          123 c          144 g          171 t
ORIGIN      
        1 gacagatggg gaggcagatg tacaatgcta cataaaagta gcaagactta tattatcttc
       61 tgtgaatgcc ttaagtgact gagcgcaggc agcaggcggg gaaggaagag ttaacctgac
      121 tgtcatttct ctccctcagc agctattgct ccctcagact ttcaagagga ggagagaatc
      181 actttgagat tcttctgcga aaatagtgtg cgccggggcc ttccttccgt cactcatgga
      241 tgctctgcca ggatttccca cctgagacag attgcgacgc atgttcgaat cactcatgca
      301 ggagaagcaa tacacaagtt cagtgtaaag ccactttaaa agctcatcgg gtgcatactt
      361 tacttgtaca aaatacctta ttcatgatgg agcagtgagg gcctaggtaa ttacttgaat
      421 caaggtggcc tcagaagtgt ttaaaggaca cttagagcat gaataatgca aaataatttg
      481 catctaaatt ttttaagtgt tctttattca aaaactaaaa tgcagttccg attaaagttt
      541 gatgagtgaa agctgagcac ttcataccca ctgtgaaacg tctcctattt gtggaaatta
      601 tttcagacag tggtaaaggg acaaaagaga t
//
LOCUS       KCLJ01000291             623 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 32907cal ultra-conserved element locus
            uce-7230, sequence.
ACCESSION   KCLJ01000291
VERSION     KCLJ01000291.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 623)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 623)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..623
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="32907cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>623
                     /note="ultra-conserved element locus uce-7230"
BASE COUNT          206 a           91 c          147 g          179 t
ORIGIN      
        1 gtccacgcta gagccctttc attaccctgc tacacggctg gatttatgct ggtggaagtc
       61 ctggttttgt acaatgatta attgacctta acaagtttaa ggatgcttat ttgcacacag
      121 ttacgaagtg ttgcaatatg tcacaaatga gagcggcttc tattataaac ataatggcat
      181 aaacagtgaa agctggttat atttccttaa aagttcattg cggggaaatg gggaagcttg
      241 agaagctaaa caaatccagg caataatgga aatgtagcat gaaattactt ctgtaaacaa
      301 cagccattca ttatttgaac atttttcata agagagtcag cagacgagcg ttgatgttaa
      361 agggtgtgta tggaggggag gaggaagcag ggagattatg aatttcgaga gaaatcttct
      421 agggttatat agacagacgt acatctgttt aagaggcatg taaagcactg attgatccct
      481 gaatattaac aatcgatgcc attttcttca ttaacttctg agtggagcac aaagaaaggt
      541 atatttgatt taagggaaag agaagggagc actatttaat gttgatttgg tgtagtgaat
      601 aaccccagag agaaatgtaa ata
//
LOCUS       KCLJ01000292             592 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 33016cal ultra-conserved element locus
            uce-2267, sequence.
ACCESSION   KCLJ01000292
VERSION     KCLJ01000292.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 592)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 592)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..592
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="33016cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>592
                     /note="ultra-conserved element locus uce-2267"
BASE COUNT          169 a          103 c          111 g          209 t
ORIGIN      
        1 aattgcactg agacaaatta cctgttcttt cacagatggg gagaaagttg cagcctgcct
       61 cagttaagca tctttgactt ttaatttgtc accatgtagc tttgtttgaa attggccatt
      121 tttaccctat ttgtcgtttc tattggtaaa gacttctcgc agtatatctg ggttaacacc
      181 acgtaaagac tgatgatatg gagtggccat atttgcatgt gtctgtcccc ggaagggtgg
      241 actgtgattt tattggatgt ctgcagctat taccttgaag gataaatttt catttttcat
      301 ctattcttcc ccatctagac tgtatcagga ttaactgtaa ttccagtaag tgcctattca
      361 aacttttttt ccaccattgt aaaatatgca aactagaatg acaaagattg tggacagctt
      421 gcaagcattt gataatttat taatgaaatg tgatgattaa ttatcattgt gtaaaaagtc
      481 atcatatttt ttgtccttcc cataggacaa caggtcgtaa acaagcctag aggaaatgat
      541 gcctgtagta ctctagatag gctattttat atttacagta gccatagaat tt
//
LOCUS       KCLJ01000293             350 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 33125cal ultra-conserved element locus
            uce-3661, sequence.
ACCESSION   KCLJ01000293
VERSION     KCLJ01000293.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 350)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 350)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..350
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="33125cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>350
                     /note="ultra-conserved element locus uce-3661"
BASE COUNT           86 a           73 c           74 g          117 t
ORIGIN      
        1 tattttaatc attttttgta aattgtgtaa tatgtcatga atctctccac cttgctattg
       61 atcatgcatg ttccacctcc tttttgtttt tgcccttctg tggtttcctt gggataggcg
      121 ctggctcagg caattaaaga agccaaagag cagcaccctg acatgtcagt gaccaaagta
      181 gtggtacata aagagacaga aatcacacct gaagatgggg aggattgacc acaggtaaga
      241 ggaccagatg attttcctag gcatttactg ggctggcatg ttgcagatgt tgttttccta
      301 ccctttaact cttcactttc tctcactggc attttcaagt tgctggttat
//
LOCUS       KCLJ01000294             286 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 33227cal ultra-conserved element locus
            uce-3258, sequence.
ACCESSION   KCLJ01000294
VERSION     KCLJ01000294.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 286)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 286)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..286
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="33227cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>286
                     /note="ultra-conserved element locus uce-3258"
BASE COUNT           95 a           62 c           60 g           69 t
ORIGIN      
        1 aagtccagaa gaaaaaggaa agctgctgtc ctgtcagagc ctcggcttat ctcagcagct
       61 ccctattttt aactcaattg caaacgatat ctgtgatcaa agagccagaa cccctggagg
      121 agcttaggcg aacagcgtgg tggccgcaat tcgtcctgat gatttgtaag caggaaagga
      181 cttttgacat gaaagacagt ttaaacagca caagaatagc aataaaccag ctgtaaaatg
      241 cttaacattg cccttgaact aatgcaaatt gttccaaaca attttc
//
LOCUS       KCLJ01000295             793 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 33326cal ultra-conserved element locus
            uce-2397, sequence.
ACCESSION   KCLJ01000295
VERSION     KCLJ01000295.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 793)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 793)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..793
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="33326cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>793
                     /note="ultra-conserved element locus uce-2397"
BASE COUNT          232 a          115 c          166 g          280 t
ORIGIN      
        1 gtttgtgtag cttctattag aaatcttgaa gttcattttc tcttttggat gcagatgaaa
       61 agatttaact aaaataatag gtttgagtta tgaagttact gtggttgaga aagcgatgta
      121 cccctttaaa ggtattagca taaagatagc acatttgttt attatgtttc aaaatcagct
      181 tctagtatct ctgccacagg taacaattga cttttcaggc ttcaagttaa tagccttgtc
      241 tcttgcttgt agagatcaat attagtatta attaatcacc attatcagcc ctaggatctg
      301 gttctatttg ttgttacatc agcaaaatat caatatagaa agtggactct ctgatcgtca
      361 tggcaacttc atctcttggg tcaaagaaag tttatcttat ctgtgcatgg agagtggcaa
      421 actgtttagg gatctagttt gaactctaag agcattgatt tagtttttgt ttgtgaatag
      481 aggctgaatt ccaatcacaa gggataggta agatttaaat attaatgccc acaggcttgt
      541 ctgagagggt gtcattacca ttactgtcgg attgtctttt tgagatgaca caatggtaga
      601 ggagaattgt gtggtcaagg ctatttacag tttagtaatt tgtgcattgg aaatgggatt
      661 taaagtgaaa gtatggaaat tctatagcat gtatgcagtg atattacttc tcccaattgg
      721 ttaggatttc ttccactata gattatgaat tggtagaagg accagatttt atcgcgcatt
      781 ctcccttcag aga
//
LOCUS       KCLJ01000296             587 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 33439cal ultra-conserved element locus
            uce-5453, sequence.
ACCESSION   KCLJ01000296
VERSION     KCLJ01000296.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 587)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 587)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..587
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="33439cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>587
                     /note="ultra-conserved element locus uce-5453"
BASE COUNT          166 a          117 c           91 g          213 t
ORIGIN      
        1 gtggcacttt aaaatacaga tgattgttta cattgtaggg tttattttgt cccattctag
       61 tgtgtgtcac tatactgtga ctttacatta agaattaaaa gtaaactaat ataaaacatt
      121 catttggata ttcactttgg tacctcagta gctgttactt ttttaatatg atgtcatgct
      181 tttatttgtt attctcctgc tttagtaata ctgccagctg tactttccac ttcacatgaa
      241 ttcaggtcta ttccaatttt ccacttccct gcctttaatc ccagcgttac aaatggaatc
      301 ccatgctaca ctaatatctc ttactcagtg gcacagaaga gatcaatatt ttaaaatgcc
      361 atatgtttta tagatcaact gtcttgtgca tcggaatcca atggcatctg aaccattaca
      421 caatatttgt aagttacaca agtcaaggac tgtgaggtct gtctttgcac acgctatcaa
      481 atgtttgtac tcatctgtga aatgtttcag tatttttata aaacttaaat gcttcatctc
      541 ctctcaccat aagccatcct ctgtggcagg catggtaagg tgaacat
//
LOCUS       KCLJ01000297             610 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 33548cal ultra-conserved element locus
            uce-2358, sequence.
ACCESSION   KCLJ01000297
VERSION     KCLJ01000297.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 610)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 610)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..610
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="33548cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>610
                     /note="ultra-conserved element locus uce-2358"
BASE COUNT          180 a          126 c          118 g          186 t
ORIGIN      
        1 aaaagctttt gaaattcttt caggtgtcct gaaaaatggc tgatgatatt gatattgaag
       61 caatgcttga agctccttac aagaaggtga gtatgccagc aaggtcctgt ttaccttaat
      121 ttagcattat tcacgaaact actgctgaac tgtaaactaa catccctgga gccctcatgg
      181 tttatcttac tggacataca ttacatgtaa ctttcaagtt aatatatact gttaatgtaa
      241 ttatattgtg cagtagtttc acttcagcgt gatgaataaa tgcccatcta tctctctttg
      301 tagacttgcc taacgatatc tcacctctac tcccatgaat tcacctttga ttccagtgtg
      361 aactgtcaat cataaggtag taattgagtg acgtatcgct gtaccgtggt ccccaagaaa
      421 tctacccacc aaaaccatcc taaaaccttt cctctgtgaa gtctagtttg gtatagcaac
      481 aaggtgaatg cagtggtttg ggaaaacagc ggggctccaa gaataacctt ttcaccagtc
      541 ccatggcaag taaatatttg aacagtctgc tcagtgcgag aagagtggga cttgctttta
      601 atgcagaagg
//
LOCUS       KCLJ01000298             405 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 33659cal ultra-conserved element locus
            uce-3675, sequence.
ACCESSION   KCLJ01000298
VERSION     KCLJ01000298.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 405)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 405)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..405
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="33659cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>405
                     /note="ultra-conserved element locus uce-3675"
BASE COUNT          119 a           80 c           59 g          147 t
ORIGIN      
        1 tttccttccc tcttagcatt tcatgctttg tgtcatttga taatatacat gactaggttt
       61 aatactcaat cgtttcccaa atccaattta acagggttta atttacatga tgatacaatt
      121 tctcacacca gaaagcatag taacccttct tcttgggagg ttaatggtga tctagcttaa
      181 agcccaaaag ataattacaa ggaatgtgct tcaggtgaca aagtattttt gacaacccca
      241 gactgttgat agctttttaa ttatacttct tcccaccata aaaaacagta tgcaaatagt
      301 ttgcaggcat ttttatttat ttatttttca gcaaattgct atgcactgta atcaatattt
      361 taactgactg ctaccccagg ctctgtcttt cttctatttg gagca
//
LOCUS       KCLJ01000299             540 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 33766cal ultra-conserved element locus
            uce-2051, sequence.
ACCESSION   KCLJ01000299
VERSION     KCLJ01000299.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 540)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 540)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..540
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="33766cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>540
                     /note="ultra-conserved element locus uce-2051"
BASE COUNT          162 a          105 c           95 g          178 t
ORIGIN      
        1 ggaggctatt tgcttgaaag ctgttccaaa taataggatt attctcatct ttcatttagt
       61 ttaataatac actacataca tttgtcaatc aaattagaat tactgtcaga ccataataat
      121 gcattttagt ttagccaata tcagtcagac ctgatttatt tgcttaatac aaatctaatt
      181 gactttcagg ctgctcttct cttttcagct gttaaccgac caagtacatc tttaatttcc
      241 aagaccgatg gtttggtagc agttgagagg aagaatgatt tgcataaggc cccagaaggg
      301 tgccaaaact cttcacgctt taaacaacag cctttattat tctgtaagtg gatgtgttga
      361 attttcatgc ttttgtttcc agttcagccc tgacagaaag aataaagtag attttgccag
      421 cacccctgct gtgccctgag ggagaaattc aatgtgcctc atttgtctta attggagaac
      481 cgcccttagc accagctttt tctatgaata tattagcata acagacagaa aagtctaaga
//
LOCUS       KCLJ01000300             686 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 33875cal ultra-conserved element locus
            uce-7141, sequence.
ACCESSION   KCLJ01000300
VERSION     KCLJ01000300.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 686)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 686)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..686
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="33875cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>686
                     /note="ultra-conserved element locus uce-7141"
BASE COUNT          196 a          156 c          152 g          182 t
ORIGIN      
        1 ctggaatttc agtataaatt ttatccaact gcaaaaggaa agtaactcat tatcaagcag
       61 ctcagaaggc tcacactact gaaggaaata aagttttatg acaagaggat ctctcctctc
      121 tccccgtgag tgagaaagtg agtgcaagaa taagacagaa agggaaggct caggagtgct
      181 gggtgaatta tagactgcct ctcaagattc acagctcttc gtggtaggag gttaatattc
      241 tcacatgtca ttaggtctgc tggctctact gatggctcat tgaatcaggc agcaaattat
      301 ttcctcatgc tgcagaggac accacacttc aaagggaagg agccagggtc aagacggctc
      361 tccagttcga ttaatgagtt gggatcagca gaggttgcct gtaggtaaga atgtgactga
      421 agcttttgac aaagccgact ttttgaacag gacttgaccc aggccccttc tccccaccaa
      481 atcttatttc caccatttgc ctctgactga cctgctcagg cctgttggga tagttttgac
      541 ctcctcagtc tttgttacca gacacaggag ctgtctgcct acatttgatg tgtctctccc
      601 caaaggccac atcagctaat ccaggctcat cagaatactt cagaacagta cagcaaaata
      661 agatagagta gattcatttc agtttt
//
LOCUS       KCLJ01000301             953 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 33983cal ultra-conserved element locus
            uce-1425, sequence.
ACCESSION   KCLJ01000301
VERSION     KCLJ01000301.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 953)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 953)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..953
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="33983cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>953
                     /note="ultra-conserved element locus uce-1425"
BASE COUNT          296 a          153 c          191 g          313 t
ORIGIN      
        1 ttttgttatc tggccacagg gtatgaagtg tttttaattt ttctgattaa cttcaggctc
       61 ccaaattcaa gtagaagcat atttgtgttt tcaatgtgag atcctgtacc ttactaatgg
      121 atgagtatgt ttgtggtact gtacaaggat taatgaaatc tgctgctgct gattgaccac
      181 tgatggtaaa tgtaattgaa ttagcagtgc actaaaataa atgtagacaa aataaatata
      241 gacaagaaaa tctggtgaaa gcttctgtaa tgttttagat taataggcat acagaattct
      301 tcacattttt tattacgttg tccctagatg aattcaaagt aattggggtg gttaatttta
      361 tttacacaga gccgttcaca gcgcattaaa taatagagat aattgaacaa gaattgtcaa
      421 gtgtgtactg atatcagaca tattacagaa gggaatgtgc ataaaacttc atttctatgc
      481 agccattgtt tatggtaatt aagtacacag atttatccct tggttgcctt ccaagcttat
      541 ggcaactgct attgttgtgc tccattaata tgtaatcagg aaatagttta attttctaat
      601 ctgcagtttg agaattcact ttctaacaac tcttaattac tgcattgccc taatgatgct
      661 catggttagg aaaactgaac caataaactc catggaagaa gccagagggg attatacttc
      721 cagaggtggt gcttacttaa taaacttgtt atgccttcac cagagggagc tcagtgtcct
      781 tcaaaagcaa ctaattttat atttcagagt tgtacatacc cacggtgcga agagttaacg
      841 cgcggcgtgc agtgggggtg gctgcaaatg tgattcacta gagaaccaga taagcgattt
      901 tttcctactt tatactaatt ctggagttta attgcacagg aaataatgca ggt
//
LOCUS       KCLJ01000302             560 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 34094cal ultra-conserved element locus
            uce-373, sequence.
ACCESSION   KCLJ01000302
VERSION     KCLJ01000302.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 560)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 560)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..560
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="34094cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>560
                     /note="ultra-conserved element locus uce-373"
BASE COUNT          198 a          102 c           97 g          163 t
ORIGIN      
        1 aaatattaat gttgagaaag tggttactct attaaggagc tatcctatgt ttagatttta
       61 atattgatct ccactatttg ggaataatta atcattctgt aagaatctgc atataatacg
      121 atcagaagtt tagcatcttc cccacaataa tgccataaat ttatattttg acctattcct
      181 aaaggcaatt tagttattcc aacagaaggg ggaaaagggg ataccgccac tttaaaagct
      241 tcaatctctt tgacattgct ggcagtgtat gggaacatta atgcatctgt catgataaca
      301 agctaagaat aacatctaga catcaaaccg agcagagaat ccatctgaag tgattcattc
      361 agatctgtct cattgattta ttaaacacag ggcaacatct gcagcctcac agagccgctt
      421 ggcgaaatta atgcaagatc aattcaaatg gaaaaaagtg caaaagagat aaatcaaaac
      481 acaatttgca tgcagttcca caatcaggct tattgggtgc aaatgctcaa ttttcctccc
      541 aaagcaaatg agtttaaatg
//
LOCUS       KCLJ01000303             681 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 34202cal ultra-conserved element locus
            uce-5315, sequence.
ACCESSION   KCLJ01000303
VERSION     KCLJ01000303.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 681)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 681)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..681
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="34202cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>681
                     /note="ultra-conserved element locus uce-5315"
BASE COUNT          191 a          138 c          137 g          215 t
ORIGIN      
        1 agcaccattt cattctattc atatatttca gttcatgtag agcagtagtg gagttttact
       61 gacttgcccc agctattttt tccagtgtat ttatatgtaa aatcacacaa accttatgtg
      121 gatggggtta tatctgaaaa tcaatattaa attcatcata tttagttgct acagaccaca
      181 gcgaacgctt gctctctaat ggttaaatgc cctttggatc tgaagccctt tgatttattg
      241 gaagaaacct gctgggcaga acatactgtg gagctgatta atgtcagctt ctgtcatcag
      301 tttccactta gattcttggc cagctctgac atctcctccc tcaaggatcc agaagaattt
      361 gaggactgat ccaagagctt tactggcatg ggatttgcag aatgtggtgc ttgcaaaata
      421 aggaagatga atggaagtaa aattccatgt tctctactgg acttgtttct ttaactcatt
      481 tctctggaga aagagaccaa tgccaggacc acaccagcaa gggaaacaaa tcaatagcat
      541 gttcactggt tttgttacag atgtcttgca tttcctttgc tgctttatat gctcccttgt
      601 agcctgtcaa agtggaaaat gactgcagtg agaatgcaga gctaccatag ctgtctagat
      661 ttacactcac cattgtacag g
//
LOCUS       KCLJ01000304             500 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 34311cal ultra-conserved element locus
            uce-6894, sequence.
ACCESSION   KCLJ01000304
VERSION     KCLJ01000304.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 500)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 500)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..500
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="34311cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>500
                     /note="ultra-conserved element locus uce-6894"
BASE COUNT          180 a           92 c           78 g          150 t
ORIGIN      
        1 acctccacaa acttttacac aaaggacaaa cagctgcttc ttgcaaaaaa atatagctgt
       61 cccttttcaa tatttaaaaa tgaaaatgtc tttaagacac acagaacatg aacacaagag
      121 ctggtgtgat agcagagaac cttattgcac ataattaaca gacacataat gtctggttac
      181 tagtaatttc cttctagctg agtaaggaaa taatttaatc atgttgatca aatgaatccc
      241 atgagcccag tgcaacatta tgccccctct ctaaatctgc attaactgat aagagtctac
      301 ttggtgaaat catggaaccc aaccttgttt aggtaaaaat attgactttt agtaattttg
      361 ttaatcaagc atttcagtct aattcctggt gctgacctca acagaagaaa gaaataatgt
      421 tctttactga agcaaaacaa aattgcatat tccatgttgc tctgttataa cagaaggaag
      481 gtatttctat aaagatatgt
//
LOCUS       KCLJ01000305             566 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 34419cal ultra-conserved element locus
            uce-4431, sequence.
ACCESSION   KCLJ01000305
VERSION     KCLJ01000305.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 566)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 566)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..566
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="34419cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>566
                     /note="ultra-conserved element locus uce-4431"
BASE COUNT          149 a          133 c          104 g          180 t
ORIGIN      
        1 ttttaaaatg tttatttaat gttctgaatg ggagtatttt aaagttatat aataataagt
       61 cctctgaact gtcatagtga agcttctggg ataaagaagc ctaaaattag gacactatac
      121 atgtaattta cattgactta aaaatggtct ttctccacag agccagactt tttaaatatt
      181 tattcctgaa taattaataa tgcatgaccc cttccaaact acaacatgcc tatccatttc
      241 cattttgaac atgcaattgg tcactttttc gccttgattc atcctgcctg gctgccaacc
      301 aaatttcgcc cgtgtgcacc tccttgacac taataatgcc tgagctcctc ttggtttgcg
      361 tgcaagattt cccaggcggc agtttggggc tgggataaac tatctatcat ctttgcatcc
      421 agctcctgtg cctcaacccc cctgatggaa attgcatttg acaactcacc tctccttggc
      481 gtgcccgagg tgaacatagc tacagaccat ccccgcaagg gagctcctcc atatgttggg
      541 gaggatcctt ttatttgtgt caggag
//
LOCUS       KCLJ01000306             435 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 34529cal ultra-conserved element locus
            uce-7067, sequence.
ACCESSION   KCLJ01000306
VERSION     KCLJ01000306.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 435)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 435)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..435
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="34529cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>435
                     /note="ultra-conserved element locus uce-7067"
BASE COUNT          140 a           84 c           84 g          127 t
ORIGIN      
        1 ttatgaccct gaccacgttc actctcaagt gaataaacat ttcagattag cactttattc
       61 acataaagca aaaagatttt taggaaagtg aatgttcttt gagctttaca gtcacagaat
      121 ctcacatatg gaaattgcag tcggtcctaa tctgctttca gaagactggt gcaaatatta
      181 aaaagtaatg aagtaacaag attgtttgtt aatgccacat aaaagggcta attatgcttc
      241 atttcctgcc tacagctaaa cccaagagac attgcctaat tgcctcactt gaaatgggaa
      301 tagcactgca gcgcttgatg gatttgttta aggagttgtg tgccacacag cgtctttcaa
      361 agtgtggcaa atgaaggaca actgccaaga aacttacctc ctgaagagga aagggcttca
      421 ttcttaattg ccttt
//
LOCUS       KCLJ01000307             458 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 34633cal ultra-conserved element locus
            uce-3400, sequence.
ACCESSION   KCLJ01000307
VERSION     KCLJ01000307.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 458)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 458)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..458
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="34633cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>458
                     /note="ultra-conserved element locus uce-3400"
BASE COUNT          130 a          101 c          101 g          126 t
ORIGIN      
        1 gcagccacgt agcgagcagc cagagacggc cttaaataat gccaccgcca gccgccagct
       61 acacccggag tctgataatt ttcaaagcta ttggcaacct gggaattttc ctgccttatc
      121 accagggctc agctaacttc actaacacta atcagagctg gaatcattca ttcaaggatt
      181 gcatgatcat gtttttcttt agcggtgaca gctgcctgag ccgcattagc aatgcagatg
      241 agtcagccta ataggttaat gcagaacacg cgaaaattag gtttaatccc cagtgaaata
      301 atctaacatt ttcacatttc ttgatgttgg gatagagaca ttggtggtga ctcaattagg
      361 tgtaatgtag atcaaagcaa atttaccttc tggctgaacc ttccccgtag tttagataga
      421 agaatataag ggttctttgc taattggccg atggctgt
//
LOCUS       KCLJ01000308             729 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 34740cal ultra-conserved element locus
            uce-2936, sequence.
ACCESSION   KCLJ01000308
VERSION     KCLJ01000308.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 729)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 729)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..729
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="34740cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>729
                     /note="ultra-conserved element locus uce-2936"
BASE COUNT          243 a          111 c          143 g          232 t
ORIGIN      
        1 tgctgtctag aaaccataag tgtctgaagt caccgacaat ttctgtagac taactagttt
       61 acaaagttat gaagaatttt gcttcctctg tccttaatta ctcttagtaa acactaattt
      121 ataatccttc tagcaaagtc agtgacccag agagaacagg agaaacaagg gcgaaaattg
      181 aaatgtgttg aaacaaagaa tgaaattgat tggtattagt cataattacc acatctctag
      241 ttatttaaga gattcttatt gttgcatgtt ttggtacata agactaatct gttttttttt
      301 tatctaatgc attagaaaac cctaggagag aagatccaag acacaatggt agggcacagt
      361 gggttaggtc cacgtgacct gctctcgcct gaaagcggca gcctggtaag gcagctggag
      421 gtcaggatca aagagctgaa agggtggctg agagatacag agcttttcat cttcaattcc
      481 tgtctgagac aagaaaatga aggaacaatg aatgctgaga aacaactgca atattttaag
      541 gtaataaaaa aactatcgta gctttcgtag agaaactctt ctttatggtg ggataaacta
      601 tttatacata atgaaatgca tgtatatatt taatgatatt ttcattttta tttgtgttca
      661 ctcatgttta ttttattgaa tccttacaat aatatttata aatattttgc caaagaggtc
      721 tttagaggg
//
LOCUS       KCLJ01000309             582 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 34848cal ultra-conserved element locus
            uce-6934, sequence.
ACCESSION   KCLJ01000309
VERSION     KCLJ01000309.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 582)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 582)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..582
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="34848cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>582
                     /note="ultra-conserved element locus uce-6934"
BASE COUNT          164 a          112 c          125 g          181 t
ORIGIN      
        1 aatctatcta ctctgtaact aaagccactt ctatgtataa acacgtttat ggttttggta
       61 gaaactttta ttaggatcac ttaactgact gacaaagctg cttgctgaaa cattgctttt
      121 gagcccctgc caggctccat tgttggaagc atagtacctg ttgcacccat cacatttaaa
      181 tcagatgtga gtgtacaggc tattgatcaa tgtgctgact tgggagagat ctgtctggtc
      241 tgttcattta gatgatgagg taaccgtggg gaagttctat gccaccttcc tgatacagga
      301 ctactttagg aaattcaaga aacgcaaaga acaaggactg gtggggaaat atcctgcgaa
      361 gaacaccacc attgccctgc aggtgatttt taactaacca ttttgtgagc ttacttgcaa
      421 tagcaggtag atgaatattg atgattgtgc agtgcatttt atttagctgg gacacttttg
      481 gcccttattc atcagaaagc taatcctgct gttcaaggta agtgcttctc tatggattac
      541 tcaaacagta gcagtagtta cgaaatttct tagcaagtct ag
//
LOCUS       KCLJ01000310             649 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 34960cal ultra-conserved element locus
            uce-6204, sequence.
ACCESSION   KCLJ01000310
VERSION     KCLJ01000310.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 649)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 649)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..649
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="34960cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>649
                     /note="ultra-conserved element locus uce-6204"
BASE COUNT          182 a          116 c          132 g          219 t
ORIGIN      
        1 aggatttaaa cttacatgat ttctaaacgg gaacggctgg gtttattttc tgcacagggt
       61 tattcagcgt tttacaaaga aggtttatgg agcggcttaa aaataagggg ttgttgttgt
      121 tgttttgcaa tgtgtgggaa atacttttat gttcacacct cactccatga atagggataa
      181 taggttcggg atcctcattg aaatttgaag tttttaaaca gaaattccct aacttttgct
      241 cgttttctca acttttttcg taggaacaat gccaacattg aagccctcgg ttggagtctg
      301 cacagttgga gatctttggt gccattttag acatctttgg atttcatcaa tcaaactgac
      361 tgcaattttc cataaaaacc ctgaatttgg gtcagaaagt gggcaaagca gataaagatc
      421 gttcgagctg tcttataaga tgataaatag atatcctttc agtccaacaa tgcaagaagt
      481 gcagttttgt aattcacttc cattggtttt gaatgcagtg agtcgaaaca atttatacat
      541 gttttcccat ggttagaaga tgtctttaca tacttgtcaa tagtagcttg acctttttcc
      601 ccactgagct acgaagaggt gctttcccct cctttttcca gaatacaga
//
LOCUS       KCLJ01000311             435 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 35068cal ultra-conserved element locus
            uce-4423, sequence.
ACCESSION   KCLJ01000311
VERSION     KCLJ01000311.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 435)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 435)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..435
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="35068cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>435
                     /note="ultra-conserved element locus uce-4423"
BASE COUNT          122 a           88 c           74 g          151 t
ORIGIN      
        1 ttttagtaaa gatgcattat tgactctgca gtagtgtatt tcactagctg ccttctataa
       61 ttaaaaattt tctctccaat ccctttcctg cgaggagcct gttgcctgaa gatttaatcc
      121 ttcattacca gttaaaacaa aatcaccaat taggcacatg aacacgtctg tattaatctc
      181 attaaggtga tggcaccaaa taaattggaa ctatttttgt gcttttactg tgttcctacg
      241 gctttatcag gccctgtggt catatacaaa gaccttgcag ctcagtcatt tagagtcatt
      301 cggttgtgga ctaaatgtgg cattaccatc tatggctgaa aattgctttc agcttttaaa
      361 ctgcactgac tagtctgtag ttaatcttag atcattcact tgcaaaatta aatgagccag
      421 aacgatcgtc ttttt
//
LOCUS       KCLJ01000312             596 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 35179cal ultra-conserved element locus
            uce-2901, sequence.
ACCESSION   KCLJ01000312
VERSION     KCLJ01000312.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 596)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 596)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..596
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="35179cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>596
                     /note="ultra-conserved element locus uce-2901"
BASE COUNT          173 a          103 c          142 g          178 t
ORIGIN      
        1 aaaatttaat gactggactg aaaaatattg aatacattaa aatgtatgat tctgtatatt
       61 ctatgccatt cccattgggt gtgcacacac atgccggtcc ccagtgtgca gtttatagtt
      121 tgcatcattc gtcactgctg agctgcagca gaccaggcca gcacatcatt tgttaacagc
      181 gacaaagccg cgctcataaa cgccgacatg ttacattaat ttataggcac tgagtgactt
      241 attaaatgtg acgtgtgaaa tataacaggg cccggtatgg atgattaggt tttgggcttt
      301 gaattgttga caaggcaggg gtaatgaatt gcgggacaca agctagtgtg tttccccctc
      361 attagtcagt attagctgca ttaatagtaa taattggata tattcatcat ttaaaatgtt
      421 ttaataaatg tttggacagc acctgatcta ggctgtcaaa tattagactg gaaggttcgt
      481 gatgggagaa aaattatgcc gttccttctg cagagattta tacagcctaa ggggtgccat
      541 ttgccaatgt cctttaagag gtaatgggtg ggagagagtt tgggagcaga cagtgc
//
LOCUS       KCLJ01000313             452 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 35290cal ultra-conserved element locus
            uce-4483, sequence.
ACCESSION   KCLJ01000313
VERSION     KCLJ01000313.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 452)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 452)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..452
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="35290cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>452
                     /note="ultra-conserved element locus uce-4483"
BASE COUNT          159 a           67 c           62 g          164 t
ORIGIN      
        1 aatttgattc taagaagttc gtataaaggg cctcaatttc ttggggtgca tgggttataa
       61 ccattttttt caagcaccct tttgaacttc ttttcaattt tctgtttttg atgatagtca
      121 tgctgacaac tttttttggt ccatcaaatt ctgtagtaca attacatgaa tttactttta
      181 ataaattacc atctttgcat atatcagtca aaccatgaag actaaacact tgcaaataaa
      241 atgcattatt aatttaattg tcacagccta tttagctagc ttctattagt atttgctata
      301 atatgcaatg tatcagaggg cagaatcaaa ttcaaaacat aaagaataaa ctgattatat
      361 tgtcctagag aaattaaaaa atagcaagct tgcaaaatta taatcaaggc attaatgttt
      421 tacataggta agaaaactat gtaacttaat tt
//
LOCUS       KCLJ01000314             663 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 35391cal ultra-conserved element locus
            uce-6440, sequence.
ACCESSION   KCLJ01000314
VERSION     KCLJ01000314.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 663)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 663)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..663
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="35391cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>663
                     /note="ultra-conserved element locus uce-6440"
BASE COUNT          195 a          122 c          157 g          189 t
ORIGIN      
        1 gggtgagtat ctgaccctgg agtaccttct gctgtctctg agaaccacag ccttatcgag
       61 aagcacactt gtggcttctg tggcaaagga tgacaacaaa agcaatgttg tccaccacaa
      121 tgactattca gaattgaagc ctggatttta aaacaaatgc atttggagca tagatgtgga
      181 aaggaggaga agcacaagtg ttgcttattg ggggccctgc agacagaaaa ttattgtgtt
      241 tctaacgcta ttgatttttt gcagcagctg atatttcaat ctgagtgcag catgtctgag
      301 cgtctacgca cactgtcaag aagaaatatg atagtgtctt aaaagattaa taatatcact
      361 ggtcctcagg aggcctgtct taattcactg gcctgttcct tggcatgtac tgtaatttat
      421 ctagtctgat ttgaatagca aatggcaatc ggctgccatt agggaaatag gcatcagtct
      481 tattgatcca ggatgggctg gattttattt aaggagagct gcaaaatgtt attaacttcc
      541 ggatgagagg ctggaggtgg agaagtgttc caaggcaggg tgaattacac tgaatcctaa
      601 aagtcctgaa atagataaaa ctgctaccac tttgttttca aagacaccag ttatttccag
      661 cac
//
LOCUS       KCLJ01000315             651 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 35498cal ultra-conserved element locus
            uce-1126, sequence.
ACCESSION   KCLJ01000315
VERSION     KCLJ01000315.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 651)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 651)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..651
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="35498cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>651
                     /note="ultra-conserved element locus uce-1126"
BASE COUNT          229 a          120 c           79 g          223 t
ORIGIN      
        1 acaatgttct ttccaaaatg tcttcatttc ataactgcaa tacaatggat gtctgcatta
       61 ggccatttta tacatacatt ttattacttc tgcagaatat atatatataa aatgtacata
      121 tagaaatcag cacacttcaa tccaaaaggg gttacagcaa cgagcttaac tctctatact
      181 tttttcttta acaggatact ttagtataac ttttgttaac tcagtagtac aagctatctc
      241 tgttctacat ttttatagct acaagagtga aatataacct acaacattta catttcacat
      301 atcttggtat acaaacagta cttagtgaat ttgagccaag gaccaaaaga ctctttaaaa
      361 attatttcac catctgatag agcttcctgt aatttacact cagtctattc tgcaatcttc
      421 taaatcattt aatctcatag tttgagttta aatccattcc aactggaaat cctggagaaa
      481 caggttactg caaactctta tgtatactct atatatacaa gttaagtaac acagcgtaat
      541 aagacttagc tatttatcct aaaactgata tacacatatt ccactacgct agacaagtct
      601 taggatttta tttctttaaa taaagcacaa atttagaagt agctggtaaa a
//
LOCUS       KCLJ01000316             497 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 35610cal ultra-conserved element locus
            uce-2802, sequence.
ACCESSION   KCLJ01000316
VERSION     KCLJ01000316.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 497)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 497)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..497
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="35610cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>497
                     /note="ultra-conserved element locus uce-2802"
BASE COUNT          150 a           76 c          103 g          168 t
ORIGIN      
        1 agtagaacat taccactgaa gttattttca gaacatcata tggatttttc attgaaacat
       61 ctgtgttaac ttttatcatc ctagctctgc tttgtaattt tggaaacaga tataaagaat
      121 gagcaaccca gagcacagta atatagtggg aagcatcctt cataagtcaa ttgaggaatt
      181 taataatctc tttagaaata agctctgcag ctatgagaaa aatgtgtggg ttaaaggcct
      241 tccaattaag aaaggtttct ctgtggattt ataggctggt ggttagctct tcctgttcgt
      301 gtttccatgg caactgtcag gtagattttc tgctacttgc taggaagttg gaaatgttga
      361 gtctggttga gcctttcaat tcactgaagc ttaaatgaaa ttctttgcaa ggaactggca
      421 tttagcctgg gtcatttatt catatctaga agagaaatca attatagtaa tcagatgtgc
      481 aattattttg agtaggc
//
LOCUS       KCLJ01000317             697 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 35719cal ultra-conserved element locus
            uce-6859, sequence.
ACCESSION   KCLJ01000317
VERSION     KCLJ01000317.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 697)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 697)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..697
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="35719cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>697
                     /note="ultra-conserved element locus uce-6859"
BASE COUNT          173 a          146 c          150 g          228 t
ORIGIN      
        1 tacacaggta atttgtgtac acctctatag gtagccatat cagagttagt tttcagttaa
       61 ccttcatact tggtagacag tttatttcct agattgatct ccaccctccc tccctctact
      121 ccttgtttag ttaattcaac aaagactttt tgcaatctgt ttggagtttg tctgatgccg
      181 tggaaaagta gctgctgatt tatttggttg cttttcgatt tctgtctcca gcccgtcttt
      241 tctcctcctt tcagcgggga tgtcagctgt tattacttcc tattgatccc tttgcaaagt
      301 gagaagtgaa ctaaaattaa tgtcaattcc actgctcaga tcaatagctg gagttatttt
      361 aatctggatt tgcgcgaggt gctaaattaa aaaaaatcag catagaggca gaaaagtagc
      421 agctcctcac tccacctgtg cccactgcct tcccagcacc caaatgttcc ctccagctga
      481 ttaccctgca atccatattt taattaagga ggtcagttag ttttcttatt tttgggttct
      541 gtatttaaag ctatgacatt ttgacattag gagtgtatta acgatagatt ttcataatga
      601 ctggtccgcc gcagcctaat ctgtccttgt tcctgggggg tggggaggtg ctgggcgaga
      661 agggagcagg agagaacgaa aaaggaagtg ggagctg
//
LOCUS       KCLJ01000318             796 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 35831cal ultra-conserved element locus
            uce-1392, sequence.
ACCESSION   KCLJ01000318
VERSION     KCLJ01000318.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 796)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 796)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..796
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="35831cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>796
                     /note="ultra-conserved element locus uce-1392"
BASE COUNT          245 a          142 c          135 g          274 t
ORIGIN      
        1 agttacgcat gtgcactgac agaagaatag tgttcaaagc acatgaaatt tacatttttt
       61 ccattgctgt aattgagatg ttgacaaatt ggagaatatt gatgggcctt tgttttaagt
      121 atttcttgcc aagtttgctt tattttttca tggtttgaac aatggtgcag cagcaatgag
      181 taataagggt agagtaaaga taactttgat ttcaatattt tgatgtgcca ataagaaata
      241 aattcttagg caaatggaat atgttgtttt aatcattagc tatgcatgaa agaaaaattg
      301 atgttgacat ctttgctgta aaatcgttgt aatggggcct tccttacaat tcatttttgt
      361 aaaattcatt ttgtacattt tgcagcaatt gaacaatccc tgcactgtga ataggcagaa
      421 ttcccagaaa tactgagaca gttggcccaa taactgctga gctcacactg cacaccacat
      481 gcacattaac catgatcatg ccagaaccag cttagctaaa tatagtcaat ttttgatatc
      541 ctcccatcct ttcttttatt tctgtcaaaa aaaaaatgtt tgctgactcc agcaattaaa
      601 caaagatgtg tgtccctacc cactgttcaa taagtagcat tttcacttca ctgtacagtt
      661 ttctaacaat caggcgggta gcaactgcag attcctcacc ttttattaaa ttggtgttta
      721 aaacatatac ttgtattcaa gttactcacc tcactcttac cttttaatcc acgtaggttt
      781 gtatgtttag atgtag
//
LOCUS       KCLJ01000319             593 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 35942cal ultra-conserved element locus
            uce-5361, sequence.
ACCESSION   KCLJ01000319
VERSION     KCLJ01000319.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 593)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 593)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..593
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="35942cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>593
                     /note="ultra-conserved element locus uce-5361"
BASE COUNT          146 a          145 c          112 g          190 t
ORIGIN      
        1 ttttatggtt tatcctgaaa tgcatttgtg aatttagaag ttctgagcaa atttaactct
       61 tgcagaaaga aacattagca gtctttgacc tcagtgattt ttttttcctt ttccctccag
      121 gtttgcagct aagactgtgc acagtgggtc actgatgcta gtcacagtgg agctgaagga
      181 gagctctaca gcacagctca tcataaacac tgagaaaact gtgattggtt ctgttctgct
      241 gcgggagctg aagcctgtcc tgtcccaggg gtaacctgct tacatctgga cttcagaatc
      301 tggcacacaa caaaagtgcc tggcatccac tactgctgcc tttcatttat aataatagcc
      361 cttccatctg gcagtgggga aagaatacac tcttgacatt cttgtcttct gctttagaat
      421 gctagtgcgt atctatcatg tatgtgcttg ctaaccaaag aacatatatt ttactgtcag
      481 ttatctgcgc aatgtatttc ccatttgttc taccctagtc cttccctctc tctcccttcc
      541 cccactacct tccttcccca tcagcttcag tggacaaata caaagttcaa tgg
//
LOCUS       KCLJ01000320             758 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 36054cal ultra-conserved element locus
            uce-6379, sequence.
ACCESSION   KCLJ01000320
VERSION     KCLJ01000320.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 758)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 758)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..758
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="36054cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>758
                     /note="ultra-conserved element locus uce-6379"
BASE COUNT          262 a          163 c           86 g          247 t
ORIGIN      
        1 aacaataaaa ctctttctac catgtcactc ttccttctta aacacacaga agcctcaaga
       61 aagctccagg cactctaaga aaagaaataa ccaaatacca ccaaatattt aattttctat
      121 gccggaaatg agaaacaggt gtaattaaaa taacactttt taaattaagt gacctctctt
      181 gaccaaccat ctgtgaataa ttcagatttt tttcccatta ttactgcaaa attaaaacta
      241 gggcatataa attacgagat tctctttaac tatctttaag caccagcaat atatattttc
      301 caccagttaa aatccttaat gataccaaaa atctgtcaag cataactccc ccaattcatt
      361 tgcctgaaac catcaatatt ttatcatgca tttgcagttg gctttaattt aacagtccag
      421 gttactaatc aaacaaaaca cccaagtcat taaaagttag cgtgccattt agaaagtgca
      481 tttcacgttt attaaaatat ctttcatgga gccattagaa ggctaaagtt ttaattacaa
      541 tcagatattt agttctactt cagttatgct tttggcactc tcttgcaact gccttgatta
      601 atcttccaga cagagctcat ccattacctc ctgaaattat tttcctctta acttcttcat
      661 aattcatctt ttttcttccc tccaaacatg taaaatgcat taaaaaggtg tgcacaatac
      721 ctgcctgaaa gataagtcat tagaaagatt ccatttca
//
LOCUS       KCLJ01000321             481 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 36165cal ultra-conserved element locus
            uce-6527, sequence.
ACCESSION   KCLJ01000321
VERSION     KCLJ01000321.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 481)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 481)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..481
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="36165cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>481
                     /note="ultra-conserved element locus uce-6527"
BASE COUNT          157 a           75 c           85 g          164 t
ORIGIN      
        1 ccaggcaatg cccagcctgc agctctaaac tgtattgaac tatccgcagt atggtgtagt
       61 cagaaattct gttttgcttc taaactgcaa gttttgcatc cattagctac atggttcata
      121 attagtgttt gggccaaaca aagagtcaat atgatgtcat gtctagacaa catgtaaatt
      181 aatatgaaag caattgagtt acaaattcta tactaataca aattaatctg aattaagttt
      241 aatccacagt tattaactga ttaaatgtgg ctgttggtag ctacagggtg ctgacttcca
      301 tctgtgatta ttagggacac agcttaatca ctgatgctgc acagtttaaa gcaaatgaca
      361 tatacagtga ctcttagtgt ttgttaattg aatgtagcat ctaagaatga aaattataaa
      421 tctacatttt taaaatatgt agaaagtcta ttttgatttt cataattagc ttctggtttg
      481 a
//
LOCUS       KCLJ01000322             691 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 36271cal ultra-conserved element locus
            uce-6997, sequence.
ACCESSION   KCLJ01000322
VERSION     KCLJ01000322.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 691)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 691)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..691
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="36271cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>691
                     /note="ultra-conserved element locus uce-6997"
BASE COUNT          235 a          115 c          120 g          221 t
ORIGIN      
        1 attacaggtt tatagtttca taattattta atgctcgtta gatatatcta tttaagcacg
       61 cttcttctga tgcatgatct cttgctaagc taatttggag tgactccctg ccaaatcaat
      121 atcaatcttc tggcaaatat tattaaatat ttgtttgata cctatttaca agtaggaaaa
      181 taattttact gccaagggat tgtaaatgtg tgaaaaaaca ctctgacagc ttacttcact
      241 cactgtctac aagccggcgt ctgcatgcca aagttggaag actaagatga agaacataat
      301 taaggaaaca tatgaaggct agcacagggt tggagattaa ttagctgcgc gtcaataatc
      361 tcatcaatat ccgattaaca aatgacacat tgcccaatga aacatattga ttcattcaca
      421 ctccacactg ttaataaatt gaagctgctt tgctaaatga gaaagctgac aaaataatag
      481 cttcctaata cttctccagt attaaaaatg taaaattagc ccaaagtata cttaatttag
      541 cagcactgtc actacactta tgaagcttgt tagcacagta gtggggaatt tttatcattg
      601 aattgttaga atggatgctg gatgtataca aaagtagaat ggaaatgtgt ttgtttggaa
      661 tggaattctt agatgacata accttctgta t
//
LOCUS       KCLJ01000323             835 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 36378cal ultra-conserved element locus
            uce-1342, sequence.
ACCESSION   KCLJ01000323
VERSION     KCLJ01000323.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 835)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 835)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..835
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="36378cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>835
                     /note="ultra-conserved element locus uce-1342"
BASE COUNT          258 a          148 c          156 g          273 t
ORIGIN      
        1 ctggttctgt cactattatt gatataagga atccatcaac atatttttat ggatgattaa
       61 gaaaggctga cctttccttt gcaggtacaa ataggtagtt cttcagaggc tgtaaatgaa
      121 tgacaagata attctatcca tttaatattg aagtgatgtt gatagtatca ttcttctcat
      181 gtttgaaacg gggaagtata gagacctttc tccctcactc tgctctgctt tatgtgatgg
      241 attttctctc tgactaatcg ctgtcacatt aacctgcact atttcatcct tcagagctgt
      301 caagataatg acgataatcg aagtggctca ttgtaggtaa aggaaattat atgagcaaag
      361 taatatcata aaacagtgtt taaatatttt aatttcattt gtcagggctg ccccaacact
      421 tcattacaca tataaccatc tctcatcagt ggaattagtg cattattcat tactgttaat
      481 tattttcaca taatggctgc cctgatatat ttaacctcca cattatatct cagataatgg
      541 gcctgtaaaa ttgaattgtg tgaagagcgg agttctaaag ctcatttgca gaacatcaaa
      601 gaacaaagaa gaggaaaaga attctaaatg ggacatttca cccagctggg gccaaacatt
      661 tgtttctgtc tgatttgcat acagaaaata ggtggttcag aagtgtttta acattgtaca
      721 tgctgtctgc tcctattaca tagccaatta gaatttgatg tcccaagtgt ttgagacatt
      781 gtctggtgct cactggcaat gagctaacag aagaaagtag acctttctga aggac
//
LOCUS       KCLJ01000324             464 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 36491cal ultra-conserved element locus
            uce-4349, sequence.
ACCESSION   KCLJ01000324
VERSION     KCLJ01000324.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 464)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 464)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..464
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="36491cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>464
                     /note="ultra-conserved element locus uce-4349"
BASE COUNT          137 a          114 c          104 g          109 t
ORIGIN      
        1 atcatttcca gctaaattca taaatgaaac tatggaatgg caccaggaga atctcctgaa
       61 atgctgaatg acgagtttat ccagaacggc agcacctgca gggttaatta agcagctcaa
      121 gacgctgggc ttcacaaaag tttttcctac tttaaggact gtaaacactt gtgctgaact
      181 agatgggcat ttgataagct gtacagcatg tagcaaactc cgagggatct ctagttaaca
      241 ctcaaattca gtgttaacac ttaacagaac agtggtaagc cgcgctgcca aggtcaactg
      301 cacagatgta ctaattgtat tatgagcttg acatctagtg gccacccctg gcagggcaaa
      361 gcaggcaaag gttaaatcag caagccttgt caaagcactt ctaactaccc accctcaggg
      421 agaggctctc aggcgctccg cggtcccacc ttcggccggc attc
//
LOCUS       KCLJ01000325             902 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 36605cal ultra-conserved element locus
            uce-70, sequence.
ACCESSION   KCLJ01000325
VERSION     KCLJ01000325.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 902)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 902)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..902
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="36605cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>902
                     /note="ultra-conserved element locus uce-70"
BASE COUNT          276 a          193 c          171 g          262 t
ORIGIN      
        1 gacaatgacc tttcatgtcc ttggagctcg ccatgacctt tcatctttcc tatcctccaa
       61 tggtctcctc taacaactaa aacgttaggc tgaattccag attgtcataa aaagcccctt
      121 cctttcgaaa caaaaccaat ttttacacca aggtggtgga gaaacacagg tccattgttc
      181 ccgcacagat ggaagttaga gttactaagg caacagctct aatccctctt tttaccacct
      241 ttttcacatc attggcctat caagtgtgct accttttaac tcataagctc aaaagctggt
      301 agtctaactg actgccctaa ttagctacga ttttcacagt acagacaaca tgatgagcta
      361 atcgaaattt gcaaaataat gacgtacctc cagcaaatat tcctcctcct gaggcccagt
      421 cttagaataa caataatgag accattatta gaggagggca ttaaaatgct gcactgctgc
      481 taaacagaga acttaattgt tctggtcttg tccattgaat caacaaccta ttgttgtgga
      541 cttgaaaaat aaaggactgg agaatgggtg ccataatgat tggtctgtgc tgccatacca
      601 gcactctgta gaattgtttt ccttttgaaa ctcttgatgg actagtagtt ttgtttaaaa
      661 gtaatataaa agccaattgt ctggataaaa agtcctattt attgaaatct ttagaagcag
      721 ttgcatggat ttgttcatga cccccaagat aaaaacatag ggaccataat aatgctattt
      781 gtggcgacca ctgcctgtag tgacactgct tgtagataac gctgtcctgt ctggctactg
      841 caaaaggaag gaaggcattt cctttgcaga cagaaatcat ggcagaaggt caaatagtgg
      901 ac
//
LOCUS       KCLJ01000326             580 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 36715cal ultra-conserved element locus
            uce-2231, sequence.
ACCESSION   KCLJ01000326
VERSION     KCLJ01000326.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 580)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 580)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..580
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="36715cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>580
                     /note="ultra-conserved element locus uce-2231"
BASE COUNT          191 a          106 c          113 g          170 t
ORIGIN      
        1 ctccattatg caagaaatat gttaggtttc ttctctagct atgcacaaat ggctggggaa
       61 agctggatat agtcccatcc tataaaccag aatcagaaat aaattaaaag atttataaat
      121 tggaggtgca attcttcagc tacattggtt taaagatggt gaaatgaatg actaaagcat
      181 tcactcacag tgttttatga agcagatcta atgtgcaggt tttgtgacct gcagtgactt
      241 taacttctca gtaaatcaaa aagcttaaca aatattaaga tggcaaagat tacctgtgtg
      301 tgccagattt tatcttttat ccgttatcat ttaggaaatg aaaagcttga gtcggaaatc
      361 agacagccag gcacgtgact cgggcggtct ggcagcccca caagacaaga acctgcagga
      421 gacacagaaa ctacacattc actgattagt tttcagtcct taagaaatgg ctcttttatt
      481 gttattattg ttagcaacca atgagcttta gaatcagagc aattcctttc taaattccac
      541 tgtgctgaaa attcattatc acaagctaga ggaagcagct
//
LOCUS       KCLJ01000327             671 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 36828cal ultra-conserved element locus
            uce-4736, sequence.
ACCESSION   KCLJ01000327
VERSION     KCLJ01000327.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 671)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 671)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..671
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="36828cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>671
                     /note="ultra-conserved element locus uce-4736"
BASE COUNT          207 a           95 c          145 g          224 t
ORIGIN      
        1 taatgccatt gcataatgca gtcacttagg ggtcttcacc agcatgtgag tgttggagtc
       61 acttagtact taatttaatg cttgatttta gcatataaat taaaggatgt gtctgtgctt
      121 agatgtaggt atatagctgg agaataagtt cataaaaata tcttttattt gcttttcctt
      181 tgagaagcct tttaaaatgt ttcgcagaaa cacttagaag gttatcacag gtagagttgt
      241 cagagaaaat ggacattgtt gtttggtatt aaaatcatgt attccagatg tgggcatttg
      301 ttagtcagtc tgctctaaaa tgacatactg ttgaatcttt aaagggcttc agtttgggaa
      361 agcaaaatat gattgggcaa attgctaaaa tatttaaagt gcagcctgtt aaagctttta
      421 ctgtgaaggg catcacgtca gaagttgtat gtggtaaaag caagtaattg gctttccata
      481 cttatgccag tcagtcagca tggggctctg ttcctatccc ttctacttca ttgcagatgc
      541 ctataggaac tttgagattt atttcagagg ggtgggactg gaagatgtga tggtgtcaaa
      601 accttattta aaattaaatt ttattggcat aaaagagaga aagtcattga aactgcacca
      661 aacatttaaa a
//
LOCUS       KCLJ01000328             820 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 36936cal ultra-conserved element locus
            uce-620, sequence.
ACCESSION   KCLJ01000328
VERSION     KCLJ01000328.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 820)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 820)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..820
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="36936cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>820
                     /note="ultra-conserved element locus uce-620"
BASE COUNT          236 a          156 c          184 g          244 t
ORIGIN      
        1 tctcatcctc tctctccttt tccctcacag aagaggcatg tacatccatt tcagaatcta
       61 atcgtagaca acttaaattt ttccaacgtt acccacatta gtaattgcaa aataataaac
      121 atgacaaaat tcagattaat agggcatcct gcgcaactgg gatggcaggg agagccctct
      181 ggaattctaa gagtaatagg tctgtgttta tttctcaacc gacagcataa tgtgactgat
      241 ttacaagagt ttaactcaag tgttaatctg acagtgacga agagcttctc agtggcagaa
      301 tcacttacac tatcatatta gttgcctcct ctattaaagc agtatggtcg ataattggaa
      361 tgcttttatg tctagtggtt ctgacaaggc tctctttagg tcacatatgg gcggtctggc
      421 ttgctgcaca gctgaacggt ggcaaatgat ttaaactgag aaagtattgt tctcctcgta
      481 ttatggagca agggcagttc aaggaaagta aggctctgca ccggctacct gctggtgtgt
      541 agtaaaataa gatggacatg atactgggtt gggagtacaa ttaaatctat tttgcaccaa
      601 tgtgttggtg gacagatgag tttccacatg gcagagcttt atgatcttta aggtagactg
      661 aactaataga ttggtgtgga gcgcactgaa gttactaagg atgagaaagc aagcagcagt
      721 acatttgaac tacaggtttc tcatatgctc cacgtcatgc tgagttttta tagctcctgg
      781 ctttcaaaaa gcctgtttca aagaggtttg cgctagactg
//
LOCUS       KCLJ01000329             470 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 37048cal ultra-conserved element locus
            uce-3724, sequence.
ACCESSION   KCLJ01000329
VERSION     KCLJ01000329.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 470)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 470)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..470
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="37048cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>470
                     /note="ultra-conserved element locus uce-3724"
BASE COUNT          149 a          100 c           85 g          136 t
ORIGIN      
        1 aacattaatt cttaacagac atcatctttc ccctgaattt ctggctataa tatattcagg
       61 tacaaatggt gctgtcatct cgagctacaa agttattact tttaatatgc cactacccta
      121 ctgttatgta aaagaaaaat aaccttgtgt gacagtttaa cattgatcga tgtgcctgcc
      181 aaatgcaaag agataaataa gcaggtgatg aataaacagc acttcaagta aagacattac
      241 tctgcatgca taaaacgacg ccaggcacct aggagctgtg ggtggccgaa ggttggccat
      301 ttcatgccca ctcactaaag cagacttaat cgcttccaat attttctgtt aaaaagcacg
      361 cttaatgagc caatttcaca agcccagaga aactgattat tatctccgag ttccaactga
      421 gttggttgtt ttccaagagc cggtttttcc ttgacgggat aaaaaccttt
//
LOCUS       KCLJ01000330             502 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 37154cal ultra-conserved element locus
            uce-2250, sequence.
ACCESSION   KCLJ01000330
VERSION     KCLJ01000330.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 502)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 502)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..502
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="37154cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>502
                     /note="ultra-conserved element locus uce-2250"
BASE COUNT          151 a           93 c          104 g          154 t
ORIGIN      
        1 ctggtcactc actgcctgtg accccggcgg gcactcgcca taaaatctga aaagtgcata
       61 aaatgaagat aaagtacctc cttggagcct gacaaaaccc attcctctgc agaatgggag
      121 ctgcagtgaa agtaaataaa tgaatggaca gcaatcacag cctagttgat gaaactgttc
      181 aattaaagca caggcattta catggtgtaa tttccctaaa ttgccaatga gcccctttag
      241 acacaaccag tgttcaaatt gatttcagca ttgattttgg ctgaagctga taaatttctg
      301 cttgttagtt aaagtaattt tgcagaagac tttgtagtgc tgtattgaag tgttcattta
      361 gctgatggtt aagagaggag ttatttacag agggttctac tgttgggctg agatgggaca
      421 attccccggt catcttttta cttttaattt ttaagcttca gtatccaatc aatacgttat
      481 tgaaactgat taaaatgtat cc
//
LOCUS       KCLJ01000331             391 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 37255cal ultra-conserved element locus
            uce-1966, sequence.
ACCESSION   KCLJ01000331
VERSION     KCLJ01000331.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 391)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 391)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..391
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="37255cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>391
                     /note="ultra-conserved element locus uce-1966"
BASE COUNT          125 a           68 c           68 g          130 t
ORIGIN      
        1 gctaatatca tcatcctctt gtcagctgta ataggctttt cctcacagaa ataattcata
       61 aaaccgctac attatattct atccctgaca ggccctatct atcctgcaac ccagcaggct
      121 cacaactaat aagaaaatat gtggttcagg agccctgaaa aattaaacag gtagtttatg
      181 aacaatttgt ttcatgggga tgtttattat gtttattaaa tattgagcct ttaatgtttt
      241 cccagtacag atgatatcat aaaaatgctg acttaagcct cagttgtgtt cttagaaagt
      301 ggcattttat agctcttgta gtacccagta aataactaaa ttgctgtggt ttaaatgtat
      361 acacagaata gaatttatgg ggagtgagta t
//
LOCUS       KCLJ01000332             773 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 37461cal ultra-conserved element locus
            uce-1920, sequence.
ACCESSION   KCLJ01000332
VERSION     KCLJ01000332.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 773)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 773)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..773
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="37461cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>773
                     /note="ultra-conserved element locus uce-1920"
BASE COUNT          214 a          147 c          141 g          271 t
ORIGIN      
        1 gatgcagagt tcaccctaga gcgctgaatt tccattcatg agcatagtac acacataatt
       61 aatgcaatct gctgtctgtt atgactagag atgacagaaa tttatgtgac agctaccaaa
      121 tatgtatata tttggttgtt gtgtatatgg ctgttaatag gtttgactgt atctagcatt
      181 gataatatgc caccaatgtg gtgaagttaa acccatccca cgtcttccag gcctggtgtg
      241 tggtagggct atccaatttg aatagctcct ttatgttctt tttcaaacca aacgttttta
      301 tttttgtcaa taaactgtgt catttattat agttaagaaa actcatgttg tttgaggtct
      361 ttatcagagt tcctacaaat caggttaatt ggtgatcaac agagcttttc tgcctttaat
      421 gagccctggt agcccaaggc aaggcccagc tcttgataag ggactttccc tttccttatt
      481 caggactctt tgatcacttt tttttaactg ggagaacaac cgccgggaat gtcattgttt
      541 tttaattgcc tgattaccaa atgttggaga taaaagatag atgttctcaa ttaataacat
      601 ttacatagat tagcatcact aacaagcctc attagtagct gctgactttt gtttagactg
      661 cgtcccatgt cagttgtgct ctgatagtgc actggtaact acgttctcca tattaaaata
      721 tatttctttc taacctcttt ccattaatca ggctatgaca ttttaaagca caa
//
LOCUS       KCLJ01000333             757 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 37572cal ultra-conserved element locus
            uce-4076, sequence.
ACCESSION   KCLJ01000333
VERSION     KCLJ01000333.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 757)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 757)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..757
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="37572cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>757
                     /note="ultra-conserved element locus uce-4076"
BASE COUNT          222 a          153 c          146 g          236 t
ORIGIN      
        1 acagattaca aacgtcctcc ttgtggttcc tattagagaa ggggcaagta actgttatgg
       61 atgcattttg ccatttttat cctgtttgtg ctgccacatc ccggccatgc taatcgttag
      121 tgtttcgtta agattaaggg tccctgactc ctggtgttca cattctggct ccttacaatc
      181 tccgctaata tgcaagtggc ggtagattga ttacacgcag gctcttatta ttaagcagaa
      241 cagaaaagaa aggaatttca aaatataatc ctccgctccc aggagtatct gtcttgttct
      301 ccatgaagtt aaaggtctga aataatgtgc ccatcaggag ctcaatgttg catgtccatg
      361 ccagttggtc caagggcttg ttatgatggt aatgacctgc tgaaacgtga gctttgatgg
      421 caacaataca attgctacca gctcacccgc tgggagaaat attttattat tgtcaaatgc
      481 cctccgcaga gatttgtttt gcctgttcct gtttaaatta aattcagagc agaactgcat
      541 tattatttct ctagagtata tttgaaataa acaactagtc tccaaattta ggattcctgg
      601 ttagtttaaa ttttcttatt agcagaaaaa ttacaatagg tgacaacata gctgcaggaa
      661 tattattatg gcagccatat gagagattta cacactgaga gcatggccta aaagcacaaa
      721 aactcccttc tactttacaa attccagcca aattaat
//
LOCUS       KCLJ01000334             772 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 37684cal ultra-conserved element locus
            uce-3776, sequence.
ACCESSION   KCLJ01000334
VERSION     KCLJ01000334.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 772)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 772)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..772
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="37684cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>772
                     /note="ultra-conserved element locus uce-3776"
BASE COUNT          229 a          180 c          149 g          214 t
ORIGIN      
        1 agatggaatt gaaaggagta acaaacaaaa tagtccaaaa tattaactga aacacatgct
       61 ggggtggaaa caacctataa taaaattact gtaaagaccc tcaaactgtt caagggaaaa
      121 aagtccaatt ttccacataa cctaagagct ctgagttttc tgattataag atccaaggaa
      181 cctgtaaacc caaggctcta attttcttat ggcgactgcg taatattttg caaagtaaaa
      241 ttgactgaga tggaagctat tttgcatggt acagtggcga tggctaacaa atgagagttt
      301 tgtgggctga atgttagtcc cctgcctcat ctgccacccc taatgacagc agccacctgc
      361 tgttttattg tcacagctgg agccggttca cactccttgg tgctgagctc tgcccatgag
      421 cgccaagctc tcgcctcgcc tcattacttt gatgaacttt ttatggtcag cacccatgaa
      481 gacctcatct aggactatac aacctagatc ggcttcaggg agtgcttcca gctagcatga
      541 ggtgataata cacagtgaca ccatggctgc tactgcctgt cacttaggca agtcacttct
      601 ggctctacag ggccctcaac aggtaaaatg ccacaaaatt ctcctttaca accaagctca
      661 ctccctttct tttcacattg agagatcata ttaccaacat ttagcttttg atattacaat
      721 atgtatcatg ctgtttattg cgtataacga cagacaggaa atctctacgt tc
//
LOCUS       KCLJ01000335             676 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 37796cal ultra-conserved element locus
            uce-5811, sequence.
ACCESSION   KCLJ01000335
VERSION     KCLJ01000335.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 676)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 676)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..676
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="37796cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>676
                     /note="ultra-conserved element locus uce-5811"
BASE COUNT          209 a          101 c          113 g          253 t
ORIGIN      
        1 caggatcagg accttaatct tgtgttttat gctattcgtt gaccttggtc atgtacacgt
       61 ttattactgg tatgaaaaag tacaaggtag agtgagtgac attcttgatg cagggagaga
      121 tttaacaaaa agaaatgtga gttttttaaa tgttctaaaa ataacctaaa agtttgggac
      181 tggcttgcat tgatgtttac atgaagcctg ttatacataa ttttccgaag ctgttttcaa
      241 tcatgcaaat gattttttcc tttgcaatat gctaatgcaa tctgatttat ttcagttgta
      301 aaagttaatt acaatgtgtt tgtgagtccc taaagatgat gtattaaatg tttataacca
      361 ggattattaa aatgtcctgt ctcgattaca gtgcttctct ttcaaacact agaactaatt
      421 gtagccttaa atcacaacaa cctcgccgtt aaaattaaca caagggcaac attgcataat
      481 tttaattaat tttaatttgg ccaaagcaaa ttaatttttg ttttctagaa ggacagtttc
      541 cagccagatt tcgttagaca tggagtttgt aaactttttt caacatttgc atggctgtag
      601 atatacactt taaatgtcat ttgttttctc atgctcattc tattttcatt gaaattacta
      661 tatttatgtc tgaagt
//
LOCUS       KCLJ01000336             591 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 37904cal ultra-conserved element locus
            uce-154, sequence.
ACCESSION   KCLJ01000336
VERSION     KCLJ01000336.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 591)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 591)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..591
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="37904cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>591
                     /note="ultra-conserved element locus uce-154"
BASE COUNT          175 a           75 c           87 g          254 t
ORIGIN      
        1 aaaaaagtta ttttttaaaa tatggagttc tgaactgcaa cttgactaag aagcccctgg
       61 gtacaacagg tcctattgtg gccttttctg atgtgagact tgaactagtc gatttttttg
      121 aaggctaacc taacctcgac tatttgttgt tatgtgcaat actgtttgta ctgtttgtat
      181 aaaagaaaaa tgaaaagaaa aaaggcataa atctttattg cagatttatt ttcattgcag
      241 actttagaca ttgtgattca ctaaaatcat ttttctactg tcaaatatgt accttttctt
      301 catgctggta ttttttcaat agtaatgtag cctttgtact gagacaaatt ttcattgtta
      361 tttttagaaa gattttttgc taagaaaaaa attaaacata tttacatatt tttcattttt
      421 atttcgtatt ttctttaagg agtgctttct caaccattaa tatagttgtt tctgggagag
      481 actttcatat ctggtcaatg tcattaatat tattttgtat ttttacttgg aataaattaa
      541 ttttatgatg ctgattcttt aagtttattt ttttcatttt cagttatttt t
//
LOCUS       KCLJ01000337             797 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 38017cal ultra-conserved element locus
            uce-3387, sequence.
ACCESSION   KCLJ01000337
VERSION     KCLJ01000337.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 797)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 797)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..797
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="38017cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>797
                     /note="ultra-conserved element locus uce-3387"
BASE COUNT          246 a          163 c          129 g          259 t
ORIGIN      
        1 tgaagatatg tttttctttc catcttatga gctaattatg ccaacacaac ataacgtttt
       61 cctaaatgcc ttataaactg acccagttac tcagaaagta ttatttttaa attgatgtga
      121 tagatgcaaa ctggaacgtt cggatttcaa ttctggcacc aattcccaga tccccttccc
      181 aagtaattta aggacttcct cccgatagtt tttcatattc ttttaactga cattttatct
      241 ttatacagta tctcagcaga atgaacatgc actaaaacaa tgacagccct tctctggctg
      301 tcatctctca ttctggcaaa gacagatgtc ttacactggc ttatgccaat aatagagccg
      361 acaaaaaaca acagagacta cctgcctctg atgtaaaggc accaattcac atttgtgaca
      421 ctcatttgtc aattaacaga tttcttccat tgttgacaca tgggacttaa aagatgtggg
      481 ctagaatgtg atgaattaaa aaagacagat gagtaagcta tgagctgcaa agtaatacta
      541 taatgtgctt tagataggaa tatcaactga cacccctgac aggccataca aggttttatt
      601 tcattttgct ctgtatctag gcttcatact ttgtcttctt tgttctcttt tcatcaagct
      661 cctaacatct cattctgaca gccagagaca tttaaggcac tttcgtttca aatgcaagtt
      721 agcatacttg atttgtcatt aaaatgcaaa acgattgcca ttgcaggtaa atgtaggtat
      781 gcttaaaagg ttgtatc
//
LOCUS       KCLJ01000338             415 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 38129cal ultra-conserved element locus
            uce-3631, sequence.
ACCESSION   KCLJ01000338
VERSION     KCLJ01000338.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 415)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 415)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..415
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="38129cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>415
                     /note="ultra-conserved element locus uce-3631"
BASE COUNT          122 a           85 c           79 g          129 t
ORIGIN      
        1 acaaatatac agaattgaag gcatggagct cttactttct gaagaacaat tcccttgcta
       61 agccactgac tggaaggaga ggcaaaaatc ctcactgact tggcggccat gtcacacctc
      121 atttcactcc ccctttccaa acagactgag tgttggtctt ctgagaatat gatgctaagc
      181 cacttttcct gtagagtttt taaactgggc ctctgagaaa gggtttgata caattcaatg
      241 actgaagtaa tacctttgtc catctgagca ttaaatggcc cattgaaata cagcttagtt
      301 agaaagaatt tcagtaaatg gtgctttcta attattatta ttattattcc cctagatctg
      361 aaaatgcagt tcaatcacgg ttgcctctta ggtcaggttt agccagtgtt aatta
//
LOCUS       KCLJ01000339             616 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 38227cal ultra-conserved element locus
            uce-2226, sequence.
ACCESSION   KCLJ01000339
VERSION     KCLJ01000339.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 616)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 616)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..616
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="38227cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>616
                     /note="ultra-conserved element locus uce-2226"
BASE COUNT          195 a          137 c           93 g          191 t
ORIGIN      
        1 ttttgtttat gtgcatgtct ttaaatccac acagaaattt tcaacgtgga aaatgctatg
       61 gcttggaaag actaaaaaga tggtccctat ttttagcacc tccaggtttc agtcgttctt
      121 taatgaattt caaagtaaag cgtccctact ctgttcagaa ggtaatagga catttaaatg
      181 catttaggtt tagtattgtt tttaattggt atgtttatga tcaggaagaa gatccgtgaa
      241 aaggcaaaac attagtgctc ctactgagac ctctactaac ctctcttcct gagagcacct
      301 ctagtaaata ccctggagca aagtctagga tcacttacat tccagcaact ctcactggga
      361 attatccaat taaagcagca attcccccac ccccttttcc ctcataggtc taaaaaaaat
      421 attgcaaaaa tcaaccactc catattttaa taaccctggt ttctcaatga aatatccacg
      481 agaatcatac actgttttca tctcccattt ttcctcctcc aaagagacat taaaacatca
      541 ttgtacatac agcgtattgc tgaagagatc attactgata aacaagggac tggctccctc
      601 catttttaat caatca
//
LOCUS       KCLJ01000340             371 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 38340cal ultra-conserved element locus
            uce-6033, sequence.
ACCESSION   KCLJ01000340
VERSION     KCLJ01000340.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 371)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 371)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..371
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="38340cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>371
                     /note="ultra-conserved element locus uce-6033"
BASE COUNT          105 a           91 c           76 g           99 t
ORIGIN      
        1 cccgcggcaa gataaatgtc cacctcccag cctggattta agcacgggaa ggccaataaa
       61 aggttgttat ttccgctctc ccgctttatc taaaacagcc agacaaaaca aatgaaaagg
      121 cttttgtaga aaatcttaat tgtggctgga cagttgtaaa ctcattaaga gccgaattcc
      181 agacagtttg cagacccgtc atttattaca cactcttaat gctgattctt tgaagttgcc
      241 tctgtctgca acaacagagg gcgtcccagc atccccaaat actggctcgg ggatcaatta
      301 ggggtttgtg tgtgcacgcc agaacgagct cccttttgct aattagaact catcaaatct
      361 tacctcggat t
//
LOCUS       KCLJ01000341             754 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 38446cal ultra-conserved element locus
            uce-205, sequence.
ACCESSION   KCLJ01000341
VERSION     KCLJ01000341.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 754)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 754)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..754
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="38446cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>754
                     /note="ultra-conserved element locus uce-205"
BASE COUNT          238 a          122 c          146 g          248 t
ORIGIN      
        1 ccacagccca aagtgacttc tgtgtgcatg agaagcaaga attcttgaga aaataaaagt
       61 tacattctcc ctttgatgag ggggggttgg aaaggaaagg gaatatgtga ccattcatca
      121 cagcaccagg ctcgttagta cccaggaact ttctactata aatgacaaag agtttcactg
      181 tcaccaaaga gaaattgctg ctgaccttag acctcttttt ggaaagtaaa ataatggagc
      241 acaggagcag agtttgatat ttgaccgaat tctacacaat tatcatgcat gtgtatataa
      301 taaaattaat tctgtgtctc tgcattgtag cctcaggcaa gcagcgtaca atcagttttg
      361 tatgtataat agatcacaga gttgttcatg aataatacaa atgcattgag cagatactag
      421 tgagtgagga tgtttgtctt tgcatggaat cgaagtgaac atgtaatatt gtgataatat
      481 atatttgatg aattcaggtc tgacttgcct ttgccatagc ctgctaattc cccgacaagg
      541 gttgccacaa taattgagtt tccaataaca ttatgattat ttccacatga taatttaatt
      601 gtaggtattt tttaatattg taataatgta gatttgtgat tattatgcat ttgcatgcag
      661 attttcatgg tgtcttggag cacatcccta catttataac ttaatttcct ctattattgc
      721 atatatattt tgggatgaac tcattaatgc aaac
//
LOCUS       KCLJ01000342             429 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 38665cal ultra-conserved element locus
            uce-1215, sequence.
ACCESSION   KCLJ01000342
VERSION     KCLJ01000342.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 429)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 429)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..429
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="38665cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>429
                     /note="ultra-conserved element locus uce-1215"
BASE COUNT          135 a           88 c           93 g          113 t
ORIGIN      
        1 cctgagtgca cccatataca aacagaatca gaagtttctg ttctgacacc gcagtttcat
       61 atcattgtac tcagtgtagg aggtgaagac aagagacaat ttattctgca gctggtttag
      121 aaataaacac agccagggaa gataaggagt gaaagaggga taaatcctcc tgaagcacac
      181 ttgatggaca gacaggctgc cattaacaat gctgttgcca agtacagagt gatgtggttg
      241 catttatact gcagacacag tccttgaaga ttttacacct ccaattcctt agaattatca
      301 gctatcttca gcctgtcact catcctggca atcttagatt tctagcttgc aggccaggca
      361 gattattgac aaagcaatcc aggatgatat aatacaccct gacaaacaat agtgaggggg
      421 attgtgttt
//
LOCUS       KCLJ01000343             718 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 38774cal ultra-conserved element locus
            uce-6690, sequence.
ACCESSION   KCLJ01000343
VERSION     KCLJ01000343.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 718)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 718)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..718
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="38774cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>718
                     /note="ultra-conserved element locus uce-6690"
BASE COUNT          167 a          216 c          167 g          168 t
ORIGIN      
        1 gatttcatga tctgttttca tcattttttc ttctttccct tctgcttttt cagggtgatc
       61 ttgagttctt cttaacttgc tagtgctcag cctcctcatg cctccatctc ctttagacga
      121 cagggtagta gtggcacttg cgaggccagt gagacctcag gatctcaacc tgtgtttaga
      181 ctccagcttc cttgaatctg cttcttctgc tggtgagagc cactccagtc tgctcggcgg
      241 agttgtcgtg tccctaaaga ctgctaatct cacgtatatg ccctcatcca acggctctgc
      301 acgctctctg agttgtggat gcagcagtgc cagttgctgc actgtggcaa cttacgacaa
      361 ggacactcag gcccaaactc aaccgagcac cagcccacgc cggagcctcc cccgcctgcc
      421 ctgccaacca aatggtcaac agcaatgaga acgccggcag cctgagcccg ctgggcggag
      481 tggggagccc cgtctcgggc agcaccaagc aactcgccag catcaaaatc atctacccca
      541 atgatctggc caagaagatg accaaatgca gcaagagcca ccaacagaac caaggtcctg
      601 tcatcattga ctgcaggccc ttcatggagt ataataagag ccacattcaa ggggctgtcc
      661 acattaactg ttctgacaag atcagccgga gaaggctcca gcagggcaag atcacagt
//
LOCUS       KCLJ01000344             844 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 38885cal ultra-conserved element locus
            uce-2963, sequence.
ACCESSION   KCLJ01000344
VERSION     KCLJ01000344.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 844)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 844)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..844
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="38885cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>844
                     /note="ultra-conserved element locus uce-2963"
BASE COUNT          222 a          168 c          206 g          248 t
ORIGIN      
        1 agaacattaa ttgcaagatc agctttaaat gaacttttta tccctgaatt aatttcctga
       61 catgtttcga cacgttttca ggtctagaca ttcactctgt acattcattt caaagtgtgt
      121 cagcttggaa tgagatttag gggccaccag gcattacttc aattagcagg gtcctttctc
      181 ccttctgtcc atcatcattt actgggactg gtggctgcat ttcctagaaa agtctttaga
      241 agataaagtg tgtgcttttg ctgaaaaagt ttctgagctg tatgagggca gagcagagta
      301 atttggcacc tctgtgcgat tcggagagtc ctgcagggtt tgccagtcag ctcttaactg
      361 gagagagcga aagagcgcct gttggattaa tgttacggtg aagtatggga agctatattt
      421 catcgctgtt atggctgcaa gaacaaatgg tgtttataca gggaccttgg cagtgagaaa
      481 acagtcatta aacaggaatt aaggagcttg tcatcgccac ttcttttcag ttacagaagg
      541 ccctccaagc cgtttttatt aggcccctgt gaattttgca gtcagccagg ccagatggaa
      601 ctgaatggag gaatagagtg gctttttggg acagctcagc ttacactgca ggcatgttca
      661 gaggtattgc actgctctct gcgcaaggag attaatgtcc cttctgttga tatttgataa
      721 tatctggcgt gcctttctgc aggtgacccc acgaaagaag ttcaaatgtc cagaatgcac
      781 agcaattgat gggttatcac tggaccagac acacatggtg gaaaggtgag tgaccactct
      841 ctat
//
LOCUS       KCLJ01000345             548 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 38998cal ultra-conserved element locus
            uce-1305, sequence.
ACCESSION   KCLJ01000345
VERSION     KCLJ01000345.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 548)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 548)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..548
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="38998cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>548
                     /note="ultra-conserved element locus uce-1305"
BASE COUNT          147 a          130 c          109 g          162 t
ORIGIN      
        1 cagatctctc ttgggatata tttaaataaa ctttttcacc tgcgctgcct ttccactacc
       61 ccaccgtggt tagtatagca cagaacttga tgcagccctg gttgaggtca agcactccaa
      121 ttcgaacctc tcaagggctt tctctatgtg ttgccagtgt actggtaaaa atgactttaa
      181 actcttgtca gtgcagttac tggtgcatgc atcacagtcc cactcaaata aacctgtcac
      241 aacacagagt cagcagctag agaagagtac aagggcaggc ctctagcttt tcattcgagc
      301 atcactaaac gtgcacagag tgcccaatta tttcagcatt attgagcaag cctacaggag
      361 gacccaagcc ttgctacatt agattttctt tagtaatttg ctcaagtacc gctgaggaca
      421 cttaaagggc ttaaaacggt ggctgcaacc agtttccttt tctggattgt taattcaggt
      481 tttctctttc aaattaactt tcactgcatg ctgtgcagta gcgctgggag aactgtttaa
      541 cactaatt
//
LOCUS       KCLJ01000346             578 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 39109cal ultra-conserved element locus
            uce-4703, sequence.
ACCESSION   KCLJ01000346
VERSION     KCLJ01000346.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 578)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 578)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..578
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="39109cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>578
                     /note="ultra-conserved element locus uce-4703"
BASE COUNT          195 a           99 c          110 g          174 t
ORIGIN      
        1 ttgttggctc cagattctgg gtgtttgagg acacagtcat ttgctgtgct ccaactttga
       61 ggaagaattt ttcaattttt gacaaggccc ttagaatcac attgcagagg aaagggtgta
      121 ttataattat caatatcaat agtaataaaa gtttattaaa ggccattaaa atgaaagggg
      181 atggctatag atcccatcac tctgaattga ctccctcctc ttctgttaat tagaaaactc
      241 agataatggt tctatggggg agtgcagggg aaatttaatt acgaaagttt aatgggccac
      301 tatctacttc ctgccagatt aaaaactgat gatttacact attttagata ctactcaggg
      361 ctcactaaca aaatatgttg cagaacaaag agtaatgcaa gacttcacct ggaatttgct
      421 caattttaaa caaagatgaa taatgcagac ctgaaaacca aacagctgtg acagagctgt
      481 taccaccaaa aactgagaga aatcgtaagc agcctttgtt agattcttca ttcattgctt
      541 attctaagta aatacatttg cataagcaga aatgtttg
//
LOCUS       KCLJ01000347             577 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 39220cal ultra-conserved element locus
            uce-4115, sequence.
ACCESSION   KCLJ01000347
VERSION     KCLJ01000347.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 577)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 577)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..577
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="39220cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>577
                     /note="ultra-conserved element locus uce-4115"
BASE COUNT          175 a           90 c          105 g          207 t
ORIGIN      
        1 tgagattctt tgtgcaatta aaactcaata tcccttctgc agctctgccc tgaatctggc
       61 actataagct tatctttaaa tttatataga ttgagagata tatatttaaa tttctgttcc
      121 tcttaagggt aaataaatat attaaaataa gctatggctt gtatagtaca gtataacaat
      181 gataaatgat gttgtgtgta atttttctac tattaacata aagtaatata aactgaagga
      241 cactagtcta ttgagagagt tagtagctaa tgttccatat cagatgtgga caatgtcagg
      301 actgaataca gattaggcag tgtccttttc tccccagggg aattaaactt tgagacacca
      361 ctggctgcca atggttttac tgcattttgt tggtgcctgt ggtgcctttc ttggtctatt
      421 aattcagaag ctgtaaatga caatgtgagc aaaaaaagct tttccagtgg gatgcatttc
      481 atttatgtat tcttggatct acaatacctt ttcagtctgt tttgtcacaa taactgttta
      541 aaaaaatggg tagattattt gtgctttacc ttaccag
//
LOCUS       KCLJ01000348             731 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 39327cal ultra-conserved element locus
            uce-2122, sequence.
ACCESSION   KCLJ01000348
VERSION     KCLJ01000348.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 731)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 731)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..731
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="39327cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>731
                     /note="ultra-conserved element locus uce-2122"
BASE COUNT          229 a          124 c          133 g          245 t
ORIGIN      
        1 tttaatggtt acatttttca ggcttataaa ttaatttgaa ttacccaata tcacttaatt
       61 tttccctagg aaagcttctg cttgcccgag caatattata actgctaatt caattacact
      121 gaaattgttt aatagaaaat ataattgctt attcatacag aatacccatt aaagaagtgc
      181 aaaggcctat accctagggt tactacatat tagtacttgg ggaattcaga ggggattgct
      241 gggtagggaa ggtgctgact gatctttaat tgttcatcac ctgcctccaa aataatatga
      301 atggacccaa actaaatgac cactcattac aagtttcaat ttaggagctt ggctgaggtc
      361 agcagattgc ttatgctgat cgcaatgatt tgaagttgtg attaccataa gcaatttaaa
      421 ttttattgat ctacccttct gaaagttgta attgagcata gatgttggac ccgtagctct
      481 ccaaactaaa ttgtactctg aagcccttgc tggattactg caagaatcaa taagcagtca
      541 gtcacattaa caatgaaata gctccattaa catacagtgc tactggtgaa actttattta
      601 ggaggggtgt tagttcactt cattgtttta tcaatgaatt tcagttgtac agggaaaagt
      661 atagcttgtg tacgcctaat gagcttgcat aatgataatc ttatatgctt taaatatgac
      721 tctttttatg g
//
LOCUS       KCLJ01000349             385 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 39440cal ultra-conserved element locus
            uce-3449, sequence.
ACCESSION   KCLJ01000349
VERSION     KCLJ01000349.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 385)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 385)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..385
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="39440cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>385
                     /note="ultra-conserved element locus uce-3449"
BASE COUNT           92 a           91 c           69 g          133 t
ORIGIN      
        1 aacttacctt tcccgagacc tggatctgga atggctcctc cctctggatg actttctctc
       61 tttgcgttta tgcctctcct caccattttc agatgaattt aggctatctc ttcccttgtc
      121 agaagaatgc tctttgtcat tgtgatcttc agatttgtgc ttcttggagg acttctcttt
      181 ggattcatgt cttcttgcct gttttaagaa gaagttggtt ctttcaggaa aatagtgcaa
      241 caaagagagt tagtatgggt atcagaagat aaaaatgcta agttgtgatg caacattagt
      301 aaccttagga gtgtgactca atccctaatg ccaccaacta cccaaagttg taaattcaca
      361 cattttcccc cttttccctc ctccc
//
LOCUS       KCLJ01000350             793 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 39546cal ultra-conserved element locus
            uce-1333, sequence.
ACCESSION   KCLJ01000350
VERSION     KCLJ01000350.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 793)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 793)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..793
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="39546cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>793
                     /note="ultra-conserved element locus uce-1333"
BASE COUNT          216 a          176 c          152 g          249 t
ORIGIN      
        1 atctggagta ataacaccag agagctgtca gtcagccatc catccatcta attggcttct
       61 taccatcttt ccatcatgtt ttttttataa ctggtcgcct ctggctaaaa tgcaaatcat
      121 gaggaagagc cgtctagaaa aagctgctgc tttcttaatt atctgtcaga gtatggacca
      181 gtggaccctg ggccgtggag tggagttatg ctaagcagaa aggcatcatg ggaattgcag
      241 tgacagctca tttttttttt cggcgttcga atgacaatgc agaaatacgg gtttttccca
      301 cactttctct gaacacctgg gccaatgctc aggggaacac aaagccaaaa ctgtcacatt
      361 tccagacatg gtcttattgc tgtcactgtg acaggattgt tgacaaatgc cagcagtcat
      421 ctcagcatct tgggaaatgt ctgccgtggt tgtgtcaaca gcctgacaga aattgttaat
      481 gtttaaactt cttccactga cagaatcctg tcttgctgac agtatttgtc atatgaaact
      541 caatctttgt caaacttgct taaaaattaa cacttcctcc atttcttttg cagctaactg
      601 cctgtgtgcc ttccttaagt aataagattt caacaaggta atattccaca gtccacaatg
      661 agtccaagag cacaagcaca ttatgaactt atggccagct tgtccttttg acctctgcta
      721 caatgataat tatgctttta ttccttgccc attttttttg ccttaggaat caaagttctg
      781 aattattcaa gag
//
LOCUS       KCLJ01000351             605 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 39656cal ultra-conserved element locus
            uce-7621, sequence.
ACCESSION   KCLJ01000351
VERSION     KCLJ01000351.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 605)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 605)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..605
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="39656cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>605
                     /note="ultra-conserved element locus uce-7621"
BASE COUNT          177 a          135 c          124 g          169 t
ORIGIN      
        1 ttttaaaaat gaatcctact acatggtcag atcagataaa caaagagttt tctcttgttc
       61 ttttgtgatt tctcatcctc caataggcaa ttgtggattt taaaaaagca gaaggtgaaa
      121 ttctatttgt catcaatttc tcttagggga tacagaacag aaaactgcag acaagctgcc
      181 tctttgatgg ctcactccta aaaatctctt tttgttcttt atctatttga actgacagtg
      241 atcagagcta tagcaggaca ggcctctctg gagaaatcac cttccccctg tctattgaca
      301 gattcctctg ttctgaatca gacaggcctt gtcccatcat aggcatcaag gccttggaag
      361 tagccaccaa ttaaacctct tgagccagta aaatctgaag ccacttttga gtgtctgttc
      421 tgattaggca ggatgagaca acagagcagc tccctggtct caattttctc tctcaccagg
      481 tgcgagaggt gtgagaggag cttcacacaa gccacccagc tgagtcgaca ccagaggatg
      541 cccaatgagt gcaagccaat aacagagagc acagaatcaa ttgaagtgga ttaactgatt
      601 gactg
//
LOCUS       KCLJ01000352             441 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 39768cal ultra-conserved element locus
            uce-5198, sequence.
ACCESSION   KCLJ01000352
VERSION     KCLJ01000352.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 441)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 441)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..441
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="39768cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>441
                     /note="ultra-conserved element locus uce-5198"
BASE COUNT          121 a           82 c           66 g          172 t
ORIGIN      
        1 tttctagtct tgctcaatat ttaacaaatc ctttgcaaaa ctatcaattt attatatttt
       61 gttttttctg cttttggatt ggagatcgtg tctctttgtc ctggtcttaa aatatttcac
      121 tattgaaaag ctaatgtgat gcaccttgtc ctgtccttac tactagatac aaaaccagat
      181 tcctggagcc atatttccct ttgtgttcta tcctattaaa cctccaaagt ccatcacctt
      241 ggattcaggt ttgctagttt aacataatcc ttcctactga agttaatatt ttttttcact
      301 tttatgaggt gaagttgagc attctgacta cagattagaa gtaaggaggc ttacctacca
      361 ctgtttcaac agttaacaat tattgtcatt attttaagag catgcacatt acttaattgt
      421 ttgtggagaa catatgacat g
//
LOCUS       KCLJ01000353             489 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 39874cal ultra-conserved element locus
            uce-7734, sequence.
ACCESSION   KCLJ01000353
VERSION     KCLJ01000353.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 489)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 489)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..489
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="39874cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>489
                     /note="ultra-conserved element locus uce-7734"
BASE COUNT          155 a           85 c           96 g          153 t
ORIGIN      
        1 tttagtagtt catgagaatg cagctagacg tccatcagaa aatgggttgt aaattgaata
       61 tgaaactgcc aggttataat ctaaataaaa tgtagtttca gagaattaat aggctgtgtt
      121 ttcctcttca gggtaaaggc actaccccac ttgctccacc accgaagcct attcgtagaa
      181 gattaaaatc agaagatgag ctaagacctg aagctgagga acatacacag aaaacaggtg
      241 tcatagctgc tgttcttgct tcacagccat ctattcctag gtaacccaag aagtatataa
      301 atacatctgt tactggaaag tttacattta aacagcatac tttctgttcc aggagttgca
      361 aacaatttca ctgtggatta attcaatgac tttttttggt ttttaaagat gatcataaag
      421 ctgctgccgc tgggagtaag agattttgat tttggagtgt gaactctttt taacttctgc
      481 aaatatgtt
//
LOCUS       KCLJ01000354             485 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 39984cal ultra-conserved element locus
            uce-1068, sequence.
ACCESSION   KCLJ01000354
VERSION     KCLJ01000354.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 485)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 485)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..485
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="39984cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>485
                     /note="ultra-conserved element locus uce-1068"
BASE COUNT          169 a           71 c           97 g          148 t
ORIGIN      
        1 attttgagga aataggatag agcatccact gatcaatcca agttgatgat ttatttctca
       61 aaacagaatg aagaaaggga ggaaagtata aggaagggaa agtattgcct tgaaatatgt
      121 tcaaaaacat tttatgaggt cactctaaag agtaattgga agaaaaattc tgcttgtcta
      181 agcgaagagc acatttgtag cagtaggcta aatgttttat cgattgggaa actgggaaac
      241 tcaagtcatt actcaccatg ggctaaagaa taattgctaa tgctctggcg gaaagattaa
      301 aaacagtttc tggaagtatt tcttacaatg atcaatggtg tatcatccca ggccattgga
      361 tcttcaataa catttttccc ttttgggata caatcaattt ttataatatg attcatttgc
      421 caggaggcat gctttcttca tgcaatgaaa aggcacttat gcaccttata ttgttgaaaa
      481 ataat
//
LOCUS       KCLJ01000355             444 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 40091cal ultra-conserved element locus
            uce-1326, sequence.
ACCESSION   KCLJ01000355
VERSION     KCLJ01000355.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 444)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 444)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..444
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="40091cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>444
                     /note="ultra-conserved element locus uce-1326"
BASE COUNT          132 a           79 c           78 g          155 t
ORIGIN      
        1 tcttgacaag atcagagagg ttttgagtaa ggcatttgct tcaaatctag attgttaagt
       61 gacacaaact tctccaaaat tggtgttaac ataatttttt tccaatattt tccttgtact
      121 atttggtaat ctttgccagt ggctgactag cttgaagtct ttgaaacact gagctttcta
      181 taaaatccaa ataattctct gtaaagcaaa gtacttggca tgcttgctgc aaagcctgaa
      241 gctttttttt ttaaggtaat ctctagaaag tagtttgtac tcatgttttc acagtgatta
      301 aatatgcaaa gtaattttca tgattatcac cccgttctga accaaatcag atgcggctat
      361 gcttctcttt gtacaaagcc agttattgga tcagattcca aaacaaatcc cctgaatttg
      421 gcggatcatc attttaaaag gggg
//
LOCUS       KCLJ01000356             608 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 40197cal ultra-conserved element locus
            uce-1064, sequence.
ACCESSION   KCLJ01000356
VERSION     KCLJ01000356.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 608)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 608)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..608
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="40197cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>608
                     /note="ultra-conserved element locus uce-1064"
BASE COUNT          193 a           98 c          134 g          183 t
ORIGIN      
        1 aacaacttct aaataaagtg aattgcaaca tggatttata gcaaaacttt acgtattagt
       61 ctggtaaaac atgttggaag tggggaagag aacaagctgt tgtaaactct tataaaattt
      121 ctactttcca ttctaacaag tgtaaaacta ttgaggttaa gtaggtgggg caaccggaag
      181 taattgctaa ggccagtggc atttttgtgg tttaataaag gcagaagcta attattcagt
      241 ttttatttaa gtgaaatgat gccaaaaagg aggttcctgt ggagcagctg cactccttca
      301 gtgttaccct aatttaccac agacacaact gtcacaaata gaacttttaa acttgatata
      361 tagccacgaa agtaaggagc cctttgtctg gaatgcatgc agaagaactg ctttatacaa
      421 atcaaccggc agatgacgga caatgatgaa aatttgattc tttgaagtca taatggtcat
      481 tgaaatgtgt gaaattctgg tattgaaaag agagcggcta gcaagactct aaatcctggg
      541 tggttgctgg aagcttgctg ggaggttttt ctgtgttttg acatcaactt cccattgctt
      601 gttccctg
//
LOCUS       KCLJ01000357             813 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 40304cal ultra-conserved element locus
            uce-5210, sequence.
ACCESSION   KCLJ01000357
VERSION     KCLJ01000357.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 813)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 813)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..813
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="40304cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>813
                     /note="ultra-conserved element locus uce-5210"
BASE COUNT          278 a          189 c          137 g          209 t
ORIGIN      
        1 ccatgacctg gagtggagtg tgactccccc acctcccact cctctagcac tgagagctga
       61 gccacaattt cactgtttta aaaccaaagg acagaaacag agactcttgt ctaacgcttg
      121 catatcttac aacaaactgc actttttcca aaaggatgtt aaaaatagaa gcatatgatc
      181 ttttcccacc tagaattgta tccttacaat taaagactat tagctggcat cccttttaac
      241 cgtcaaactc agacagtggc agttctatag ccacaaagag aagcagtaaa tgagaagaac
      301 atgttactac actgcatttg agaaagtttg gctccaagct atgcactgat taatatcaga
      361 tctccttctt tacttgcctc ttgacaatct tgtcacatct ggctgacaaa tccttacaag
      421 cttatccaaa ccaaggcagc ccagatcatg ctccgggagt agcttgaagg aagcggcaac
      481 accagccatg tactgatgtg ccatcatgaa actaatgaag ctgacttcac ttgcagactg
      541 caggaacacg aagaaacaca acatgcccca aggttttgca acataacgca gagttagctc
      601 accaaaagat aagacaaaca atcagctcct gaggttcaag aagccaagta gttacatgaa
      661 ttacaaaaat ttataggaat tgcttgaaca acaatctcaa ctaaacgagc acaataatcc
      721 aacttcagat cagatgtgaa aattgactgt taaatgcctt tcaaataatg gtttgtttta
      781 aattaaaaca aaactagtct aattttctct ctc
//
LOCUS       KCLJ01000358             685 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 40519cal ultra-conserved element locus
            uce-4806, sequence.
ACCESSION   KCLJ01000358
VERSION     KCLJ01000358.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 685)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 685)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..685
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="40519cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>685
                     /note="ultra-conserved element locus uce-4806"
BASE COUNT          214 a          116 c          197 g          158 t
ORIGIN      
        1 agctcatccc gcatgttctg gtcgtcgtag ccgaacatgc ccaggaactc gttcatggtg
       61 gtggcggcgt aatcccgcag tgatgaagct tcccctgcag tgaaaccaga ggagcacaca
      121 aggcactgac tcctcccata ccagcactag tagtgggggg gggaagggga gaggggaaca
      181 tgatctactg acgtttggct cacttgttag gttttatgac tcttaaatta atttgtttaa
      241 aaaaaaaagt aattaatact ggggtaaaat aaaaagagtt catcaatgcc aggaaaatca
      301 atttcctaaa tgttctagcc gatggctttt cagtacatta aacaaagttt cataaatgtc
      361 tctgcactct tgccttggcc taatatgaag aaaaagtaat tttactggaa gtgagaccaa
      421 tgccaatatg ccaaggtttg tacagatctg tccttgtgta tatttgtgta tggaaggagg
      481 tgcacagagg atagatggca gcatgtgtgt gtgtgttggt gaagagcaag caggagcagg
      541 caggacagaa tggtgtggaa tggataaaca aggcaatgta tggggtggag caggaggagg
      601 gcagaataga acagtgcaga aggaggaaag cagcagaagt ggagatgaat caaggcaggg
      661 gaagagcagc aaagagaaac ctggc
//
LOCUS       KCLJ01000359             573 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 40628cal ultra-conserved element locus
            uce-540, sequence.
ACCESSION   KCLJ01000359
VERSION     KCLJ01000359.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 573)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 573)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..573
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="40628cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>573
                     /note="ultra-conserved element locus uce-540"
BASE COUNT          171 a          137 c          117 g          148 t
ORIGIN      
        1 cattagtcat taatttccac tcccatgacc ttcatgtagc cagccaggtg ggcagtggtc
       61 agtctggaaa cctcacctga ttctgcagaa ctgcacttcc agcgtgtgct aaaactggag
      121 acagcacatt tatctggttc tttagaaaaa ggctgtaaca gaaataagta gatgttcttg
      181 cacttgtcat tgagaagcac tctgcattta tttggcactt agagcaggag cagcagcagc
      241 agcattgccc ttggtgctga tttcttacta ctctaaaacg tctcctctga gccagaatcc
      301 actggctgtt gctgctcatg ctgtgagaca cctgcactgg ctactgggct tgtcatgacg
      361 cacaaaaccc caccatcttc agcttgacat tgtgcaagtt ataattattc atccaaatga
      421 atatgtcaga gcagcagcag cagacctctc atcagagcaa aagaaaaata catcaaaaca
      481 ttatcaaccc agcaggaaga cagggaccat aaggaaaatt acccattttt aatatggatg
      541 ccataaagcc atgtctatta ttacacggaa ggg
//
LOCUS       KCLJ01000360             724 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 40735cal ultra-conserved element locus
            uce-4154, sequence.
ACCESSION   KCLJ01000360
VERSION     KCLJ01000360.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 724)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 724)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..724
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="40735cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>724
                     /note="ultra-conserved element locus uce-4154"
BASE COUNT          227 a          126 c          129 g          242 t
ORIGIN      
        1 gatttttctg aaagttctgc agaaatctca gttatagccc aatgctattc tgtgctttca
       61 aaaaaggctg agtgtgttca gagtaatttt tccataatgc cagtatctgt gacagattac
      121 attacttcac acacctgcat ttgctctgaa cctgctagcc tgataaattg ataattggtc
      181 atatgttgtt ttaaaaaggc aaagaacgta gttccttata aaagaatgct acatatttct
      241 tctaaaaggt taaaaagcat ttctcagggc tcttaaatta ccatattctg ataccagggg
      301 aaaataaaac ctgggcttag agtcgtgttt gtacttagag ggctttccgg acaggaaggc
      361 aatcttgatg caattcagta agccacaata ccagtggggc atcacaggtg aaaaaattgc
      421 agctgtaccc ctcaccacaa tgtattacaa ctgtacagtg gaatatttcc tgtacagaaa
      481 tagggcttgg ttaactttgt ttcccaagag tagatcacat taaaatgtta taaaatcatg
      541 atttcctgca tttgaatact tgtggtttct caactggttc caatattaca aaaggttttt
      601 tatagcttct attagttgaa gatgtataga agcccaaact cagttaaaag gaagttatgt
      661 atttttaaag aacaactttt ctcagaagac tagttttctt tcacatcttt tctatttgat
      721 attt
//
LOCUS       KCLJ01000361             670 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 40847cal ultra-conserved element locus
            uce-6873, sequence.
ACCESSION   KCLJ01000361
VERSION     KCLJ01000361.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 670)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 670)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..670
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="40847cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>670
                     /note="ultra-conserved element locus uce-6873"
BASE COUNT          227 a          133 c          137 g          173 t
ORIGIN      
        1 agaaagcact ggagaaatta tttgagtcat ttaggtggcc tatatgatgt tgcatgttgt
       61 cctaagagga cattttatag ctctgtaggg ttatgtctct tgtgtgtata cacgcacaca
      121 cactctcaca tacatacaag agaagaagtc attttatttt acccaaatca gctacttaag
      181 taaattgaga tatatagaat ttaccaatga aatgagtgat ttgatgtgaa taaaagaggt
      241 ggtgtgttgt aaatcagtac tgacagccaa atgggaaaaa ttgacagagc actgtaatca
      301 ctcccaacat ccactgaagt tattgatcca aaacctctat aatccccttc acataacaca
      361 agcaatttca tataatacct gtaataacag tgcattcaaa ctcaagtagc catcagaagc
      421 tttgtatcta atggcaaagc aggcctctgc tgagtaagtg taacaactag agcacaaaac
      481 cgccgatgac tcttgccttt cataggtagc ggcctgcgat aagagctagt tcagaagata
      541 aacagttccc aacgccaagg aaaatgagct attaattgcc ctcttgctaa agacatcata
      601 aaggccctaa agccctgggt gcaaaacagg gagaaggtaa gcaggatttg gggactgata
      661 acgccccggg
//
LOCUS       KCLJ01000362             430 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 40954cal ultra-conserved element locus
            uce-2325, sequence.
ACCESSION   KCLJ01000362
VERSION     KCLJ01000362.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 430)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 430)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..430
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="40954cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>430
                     /note="ultra-conserved element locus uce-2325"
BASE COUNT          134 a           89 c           87 g          120 t
ORIGIN      
        1 ggtcatgcgc agagcacagc caagcagtga gactgagatt gtattgacaa gaacaagatg
       61 aatggccccc tggagactat ggggtttgta tgctcgtttc caccaccttt tcatcctttt
      121 gtaccccctt tcagttcata tgcagattaa agcaagtccc cactaaatac tctttttcac
      181 tttagttttg gaaggtaggt ggaggatcta aatatttatg aggcctctgg tttatgatgc
      241 actcttgttg aatgttgagg aattacgtta atgaatgcat gcctgcacac acagacacag
      301 aatccaggca aaaccacaca aagcattgtc agctctaatg tcattgctta ctaaaacagt
      361 tcccattttt aaaatccatt gccaggagaa aaataaattg tatggctgag cacaaaagaa
      421 agaacaaagt
//
LOCUS       KCLJ01000363             679 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 41057cal ultra-conserved element locus
            uce-7622, sequence.
ACCESSION   KCLJ01000363
VERSION     KCLJ01000363.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 679)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 679)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..679
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="41057cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>679
                     /note="ultra-conserved element locus uce-7622"
BASE COUNT          213 a          140 c          122 g          204 t
ORIGIN      
        1 actaattagt cccagagatg aaaaacgcat tgctcagatt ccagataatc ttaaacaaaa
       61 cacttcatgc tgattttatt ctgcttctat ctgtgcaaag attaaacaaa acccacagtt
      121 ggtttcatct gccaggctct tcatgtcaca gaaagagaaa aataaatcca aggcaaggtt
      181 tgcagtgctc tgagcttgct catccttagt ttatcttctg caaatgagca tgtataaaac
      241 agtccaccta ctgttctagt tgctacgata taatgcagtt ccactgaatg atcctgttaa
      301 cctaaccttc aatttgctgg gatttgaact ctgaattaca gcttactaac atagtttaac
      361 agctggtaca agggcttctt ttgaattttt aatcacatga attaaagatt gctggagatg
      421 cttttcagac ctccactagc actgatccaa tgtacagaaa gacaagtata ggtagcccca
      481 tgaggattaa gagcacaaag gtactatggc ttgtgaagct atgctgctct ttgcttgcca
      541 aattaggaat actggtgcaa attattcaaa gataaattca cattatggct ccaaatggcc
      601 ccctttttag ctcacaacac agtgtgcatc gccagagcac aggttttgaa gataaagctt
      661 agtttagcaa aatgtttct
//
LOCUS       KCLJ01000364             425 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 41166cal ultra-conserved element locus
            uce-6726, sequence.
ACCESSION   KCLJ01000364
VERSION     KCLJ01000364.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 425)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 425)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..425
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="41166cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>425
                     /note="ultra-conserved element locus uce-6726"
BASE COUNT          144 a           72 c           73 g          136 t
ORIGIN      
        1 atgacgtttt cactctttag aagaaagagc aatattgttc cagtgtgcac agaacatatg
       61 ctaatcagct gtactcttca ggcacaaatg agataatatg ctcattgttt agacactgga
      121 attgttcatt acaaaatgac acagtgtttg ccaattttgt cttcattata aatgtaaata
      181 ttaactggtg atatgcaaaa gaatacaaaa agtcaacagc aattaattgg cttctgcagt
      241 aattagcaac tgtaaggcaa acacttagga gccgttgtaa ttgtctgcat taggaataca
      301 cctcctgtac agatctaatt agcaatttaa atagttcaga aattatatgc ctcttgcctt
      361 tacactccct gaagtactgt tcattaatgg ggaaaaaaat tgctagtaaa tgtcatttgc
      421 attgt
//
LOCUS       KCLJ01000365             639 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 41270cal ultra-conserved element locus
            uce-596, sequence.
ACCESSION   KCLJ01000365
VERSION     KCLJ01000365.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 639)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 639)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..639
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="41270cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>639
                     /note="ultra-conserved element locus uce-596"
BASE COUNT          191 a          108 c          138 g          202 t
ORIGIN      
        1 ctgcctttgt gtccaggagg agtgttccag tcctgatttt tactaatgtt atggtgcttg
       61 cattatactg tgggtcttta attcatttct ttgtggagca atagctttta acaggttaat
      121 gacagaaaga agcagaacca taataaaaag gcacagctcc tgcactttta agaaatagaa
      181 gtgcttaaaa gtgttatttt ttatatgaga tgttcttgct tagtttttaa agtgtgactg
      241 gtgtttagtt aaatctttta cagactcagt tcactgaagg tgacagaagt actcacttga
      301 gctcaatgaa aagtagacgt gacagtaaat ttttcagtca gagacaggag atcttgttat
      361 aggagtcagt atgggggtca gggcagagcc tgttgatgat tgaggaaaag agaagtaaat
      421 tcattctgct tcatgcactt tgtcaagtgc cagtagctta ccattgagaa ctagtcaccc
      481 gttctagtct tacggcccta gaggtcactc atttgatata aatcatagca ctgcataggc
      541 tcagcaacct attgccattc cagatgaaat aaaaagagag aaatgcttca ttctgaatta
      601 aaatggctgt gaatatccca ccacatgttg ctgttcaat
//
LOCUS       KCLJ01000366             808 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 41383cal ultra-conserved element locus
            uce-1849, sequence.
ACCESSION   KCLJ01000366
VERSION     KCLJ01000366.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 808)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 808)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..808
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="41383cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>808
                     /note="ultra-conserved element locus uce-1849"
BASE COUNT          242 a          172 c          156 g          238 t
ORIGIN      
        1 aaggtagccc cgtccgctgg aaaatggaac cactcagtac actttgtgta aaatgttgaa
       61 acttttacca ttaaaaggtg tcaacagtga agctttcact gcaggatgcc tgattttaat
      121 gcatctacag taattcccag tcagttgtct atgctatgaa atgaatgcat ttgaaccaga
      181 atcgttcttt ctgcatgcca catgctcatc ctctccatgt gcctagcaag gatgagcttc
      241 acaaggcctt tgggatcagc cttaagtgct caaagagatg aggcaggcag cacctacttg
      301 ttacatggac agacacaaag accacagaat tttcctaggt ccgtcaaatt cttttctgct
      361 tctttcatgt ccttattgat ttggtccatt ccctcttcga tgcgttccag ttgttctgat
      421 taaacacaag tattttatcc ccacagaatg aagcagatgg aaaaggacaa agaaaaaaaa
      481 gacaaaaact tcagacattc actgtgacaa aaaactggac accacatagc agagccggta
      541 cccagtacct acttgttaca aggacatatg aaaaggccac agcatttccc taaatctttt
      601 aaatttttct cggcctcctt catgtcttgg ttgatatggt tcatgccttc ttcaacacga
      661 tcgagttgtt ctggtcagga caaagggatg acagtgtgga atgaattgta tttttgtttg
      721 tttgattttg tcttcaacag aacatgaaaa atgaccatgt agaactgagt taataatgac
      781 attacaatgc attaatctga gctgatgc
//
LOCUS       KCLJ01000367             688 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 41496cal ultra-conserved element locus
            uce-4705, sequence.
ACCESSION   KCLJ01000367
VERSION     KCLJ01000367.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 688)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 688)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..688
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="41496cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>688
                     /note="ultra-conserved element locus uce-4705"
BASE COUNT          206 a          131 c          128 g          223 t
ORIGIN      
        1 tttccaagca ttccatgaag ccttccattg tttctgacaa tattgaaagt ctttagattg
       61 cgagaacaga atacgcattt gaagcttaaa ttgtgttgtg cccagtcttt gagtcacctg
      121 tacaacgtca agtccattct attttggaag ttgtggtaga gcaggagtgt agtcctgttt
      181 tcctcctccc agtagtgagc taggaacttg cactattgca tgtgggctgt caattagcat
      241 tatctccatt tgttttagat cgagacaggc ggtctgtttc aacaatgaac ctttcgaaac
      301 atgttgatcc agtcataaac aagcggctct cctcctcatc tgcaacatta ctaaattctc
      361 cagacagagg tacagttttg aagaaaagag cagcaagaaa gaatgttcta ttactttgca
      421 cataaaacaa gcttctgaag tcgttttctg tacttcatct aagtggtagt ggaaagactt
      481 caaatgtgac aagtaaatgg ttgaacattt tttcctatga gaacaaataa ttcttgtttt
      541 ttaaaacaag agaacttacc taaacaatcc tactttagca aattatgtgc ttctgtcagg
      601 tttttagtaa atgaggtaca actattgaaa gaatacatca ctccatagtg catgcaatca
      661 tgtgtgacct tttatttgca ttagacca
//
LOCUS       KCLJ01000368             594 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 41605cal ultra-conserved element locus
            uce-5817, sequence.
ACCESSION   KCLJ01000368
VERSION     KCLJ01000368.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 594)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 594)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..594
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="41605cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>594
                     /note="ultra-conserved element locus uce-5817"
BASE COUNT          170 a          133 c          143 g          148 t
ORIGIN      
        1 gaggaggaaa actggggaat cgtttcattg tcattactgg ggagccacca gatgcttggg
       61 attccagggg ataaaccttt caaaagctcc attgacactg gggtatgtca ataattccac
      121 atattagttg catgcaaata ctacacaata aggtatggaa agaaactgta attgggaata
      181 ccactctatc ttctgactga gcccattgtt gaaccccagg ctgaacctcc gaccctttac
      241 tttggaggga cacaataggc tttgatatga gatggtggga aacgggcttg gaggctcatt
      301 tcacattcag ctgcaattca tcagcttggc tgggacttct agcagcttta atgaccactg
      361 caattgatgg ttaaatcaat ttgtgacggt gacagcatgg ctggccccta gactgtaaca
      421 attcgggatt acaacaggca gaaatggccc cgttattcag acatgcgtgg tttctgctca
      481 gcccagagtg ggaacaacag caggacaaag tctcacaaaa acactggaga atgcacacat
      541 tcactccagt tgactacaca ccaccatggc ttctttgtag catgatcagg cggg
//
LOCUS       KCLJ01000369             326 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 41715cal ultra-conserved element locus
            uce-4810, sequence.
ACCESSION   KCLJ01000369
VERSION     KCLJ01000369.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 326)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 326)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..326
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="41715cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>326
                     /note="ultra-conserved element locus uce-4810"
BASE COUNT           96 a           49 c           86 g           95 t
ORIGIN      
        1 gtcttgtgtt agcagtgggc tgtttcagat tatggtaatg tgtttctgat ttgagtcgtg
       61 ttgaaagcca gaacaaggca tctcatgtgc agtcctcttt gaggcctgct gttttcaatt
      121 cctcttcaca gaatgggctt ttatttgatt tgttatgggg attttttctt ctgttgccaa
      181 aacagctgca agcctggaag ggaatgagac acaaggccac agcaaacttg ttagctcata
      241 agagaaacag aatgttccag ggaaaaaaag atgaggggaa gagagatgat aaaagcggta
      301 agtgaaagga taaagagttc taatga
//
LOCUS       KCLJ01000370             642 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 41817cal ultra-conserved element locus
            uce-8029, sequence.
ACCESSION   KCLJ01000370
VERSION     KCLJ01000370.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 642)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 642)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..642
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="41817cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>642
                     /note="ultra-conserved element locus uce-8029"
BASE COUNT          190 a          127 c          119 g          206 t
ORIGIN      
        1 cgggagaaga taacagcttt attttgtttt catggttaaa gcaaaccata aaattctttg
       61 taactgagtg ttgtcgaggc atgcagcccc atgattccaa gtgtaacatc atttatatcc
      121 ataagcagat taaattttaa aagttctctc aataccactg accagagaaa caatgtcatt
      181 gttagaaaac acacgcgctg gttaccttat aatcaaattt tcactgccct ttctgacagg
      241 tttttaagtt acttaaggga tctatttata tgtggaagca tcaacatcat gcagtaaatc
      301 caaccacaac tcagtcacat attttattaa gtttaagttc agtgaaagtg cagagtaaac
      361 tagggcccta tgtctctcag ttacatctga tttgcggttg ctataaaaag gcccacatgc
      421 cgctctttca gatgtgtttt ggattgaaaa taggattaat gtgctaaagt gtgattagaa
      481 tggttaaaca cgattaattg gaacagactt gtattgccaa gggagctccg ctgttactgg
      541 ccagcctcca gtttaccaag tgaacaaagc aggccaactg tccaagtttt tccatgtctt
      601 tgcttatgtg ccttttcctt tgcattttct catagccagc tt
//
LOCUS       KCLJ01000371             634 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 41926cal ultra-conserved element locus
            uce-5164, sequence.
ACCESSION   KCLJ01000371
VERSION     KCLJ01000371.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 634)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 634)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..634
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="41926cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>634
                     /note="ultra-conserved element locus uce-5164"
BASE COUNT          189 a          139 c          103 g          203 t
ORIGIN      
        1 gtggttattt tgaaaaaacc ctctgcttac ttacatgaac aacacacaga aaagagttaa
       61 aagtggcaca ttatctttcc agtgacatat ttagccagtt attcaggcta taatgaagct
      121 gtgtaatgaa gtcaatgtcc ttgaaagttc ttcatcaatt tttttctcat ctgtcagcat
      181 atccacttgc cgacacaata ttaattaaac acaacatttc ctggagtgtt gaagtgaagt
      241 cccatcactg ataatgaaca ggtttaggag agtcacatcc caacaaaatt actttttaaa
      301 ccagccttat taagcagaaa attagaccta aatcacccta caacatcctc attaaaagcc
      361 actgatcctt ggctgcttct atgttctaac atctttaatt agcaaactgc tagtctatct
      421 gccatgataa atgctattaa tcttaccttt catttgcttt ctcttaacct atcgtttgcc
      481 cacttcaggg aacacaggct tccagcagga cttgtttttc tgtgtttaat gtccttgtga
      541 gaatgaaaaa tggggcagtc acgggttaaa cgtgatgact ctctccaccc tcgctccatc
      601 actgaatttc agaatttgta gatatctcgg gtgg
//
LOCUS       KCLJ01000372             553 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 42034cal ultra-conserved element locus
            uce-7959, sequence.
ACCESSION   KCLJ01000372
VERSION     KCLJ01000372.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 553)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 553)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..553
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="42034cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>553
                     /note="ultra-conserved element locus uce-7959"
BASE COUNT          169 a           95 c          117 g          172 t
ORIGIN      
        1 gtcagtgagg aaaaaacccc tcagttggct gagttacgtt ggtgagatgg ctgtttcatt
       61 ccataaagtg tctgcagtgg atttgaacag taggaaatcc aagggtgata aatagctatt
      121 tctaagtaaa tttcatgcaa ttgccctttg gttaaagtct ttcctctcag cactttcctg
      181 tgcacatagc ccaactaata atattcagga gcaagtgctt tccagtgtga caactgattg
      241 cactttgaag cagtaaatgg ctgatttcat aattggtata atttttcaca agtacctgaa
      301 tgtcatatac agaaagaata agcaacctgg acttaatacg ggagcttttt caattctcct
      361 aaaaatcaat aatgtattaa acccctctaa ctgattaaaa taatgtgaac cctgagtagg
      421 ttttgtgagg aaggcaggtt tcttcaaggg tggcagattt atggcaaaag ggttaataca
      481 tggggagaac agggatacgt tacagatgga gtccgttttc ctaattaaac ttttatcaag
      541 attttcccgg ttt
//
LOCUS       KCLJ01000373             708 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 42143cal ultra-conserved element locus
            uce-5021, sequence.
ACCESSION   KCLJ01000373
VERSION     KCLJ01000373.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 708)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 708)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..708
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="42143cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>708
                     /note="ultra-conserved element locus uce-5021"
BASE COUNT          255 a          104 c          134 g          215 t
ORIGIN      
        1 ttcctttaaa agacaaaatg gtaaattgaa tttagccatt aagaaagaca acatcagaat
       61 taaactgaag agaataataa ttgcatctaa tagaactgac aaacaataat aattcttccc
      121 attaaataaa tacgttataa aaaatttatt atgaaatgcc acattatgca agccacgatt
      181 cagagatgag ttctttgcat taagtacagt agatgccatt aaggaaaaca gtcaatatgt
      241 cactaagcca cggcctgtaa aattaaattg atttggtaaa tgtaagtaag atagatctgt
      301 ttgctttcat catcaatttt gagtgggtga acaggtgatg tcaccaacct gggagcgata
      361 aagatgcagg accatctgga aagctttgtg atggatgggc aactgctttt ggatagtgac
      421 agtgctgtgg tactttgtca cttgggatgc agtacttaat aacttttcaa taccatcata
      481 ataaatttca ctgccttatt aatatagaaa tggtgagtta ttactgtgat ggctattgta
      541 aataacaaga gatgcagctg tcagaagctg attgtttggg catgtttctt taagcaacac
      601 agttgacttg ggataatcaa cgtatgtcta tatcagcaga gtttattgct cttgtcaaaa
      661 gaaaaagcag cattattcaa aaattatatg aagtccataa taaacaag
//
LOCUS       KCLJ01000374             645 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 42254cal ultra-conserved element locus
            uce-5292, sequence.
ACCESSION   KCLJ01000374
VERSION     KCLJ01000374.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 645)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 645)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..645
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="42254cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>645
                     /note="ultra-conserved element locus uce-5292"
BASE COUNT          159 a          142 c          153 g          191 t
ORIGIN      
        1 ggcgcttgct ttctgttaac ctctgttgtt ccctgtgcac agaccccgtg ggactgtggg
       61 tgtgcaggga tgctgctcat cacgggcagc ataaacaatg tccttgttag gagctgctcc
      121 aagaccctgt gaagaagttg gctgctgaag ccaagcagta gctgggactg tgcctccccc
      181 tgggctttag cccctcctca ttaagcaggt ccgggctatt gattgggagc ttgtgtttgg
      241 aagagtctta cttactctat gcattatctt gacagattga tcagacctga ttgagaacct
      301 cttaaaggaa cgaacagctg taatgggaaa gttggactct gtcatccgtt aggatgattc
      361 tgggagcgag aagaacgagg ctgacatctt ggagcaattg tatttacaat taacatggct
      421 gaaaacgatt gcctctattg atcccccctt cctgcaatta cagccccatt gtttacattc
      481 cagcacttca gttataaaaa ggaaattcaa taattattgc attatttaaa gttaaagtgc
      541 cacagagttt gctggctatg cttgctggtt gatttaacgt tcagtaaaat ccatgctgag
      601 ctctccatcc ttaggctgag caatatttgg cctttaatga gactt
//
LOCUS       KCLJ01000375             298 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 42362cal ultra-conserved element locus
            uce-6030, sequence.
ACCESSION   KCLJ01000375
VERSION     KCLJ01000375.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 298)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 298)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..298
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="42362cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>298
                     /note="ultra-conserved element locus uce-6030"
BASE COUNT          117 a           48 c           59 g           74 t
ORIGIN      
        1 ccccccttcc ctgaaaaacc aggggaaagt gaaaactgat tccattaacc tctgtcatta
       61 cctaaatcca tctcttaatt aatatgagtt aatatgatta atcaaaataa tgagacaaac
      121 ctattaaatt agggtgttta aattacaaat ggaagtggta aaggcaaagg gactgataac
      181 aaatagctgc agtcagagat ggggctagct cttgaaatga tatgtgacaa acagcagaga
      241 gaatcaagaa tgaggggaat cagcaagatt catgtgagaa aaatattcta catgcata
//
LOCUS       KCLJ01000376             652 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 42461cal ultra-conserved element locus
            uce-1989, sequence.
ACCESSION   KCLJ01000376
VERSION     KCLJ01000376.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 652)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 652)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..652
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="42461cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>652
                     /note="ultra-conserved element locus uce-1989"
BASE COUNT          192 a          133 c          122 g          205 t
ORIGIN      
        1 tttgattcac acaaaattac tttagtcagg ttttctgtgc aatacaaagg gtacaatggc
       61 tttcttctgc ctgtgccatg cctgaacaga ggaaaagagt ttcactcctg ttgtttattg
      121 attttctaga ttaagaatcc cagtgagaga attgtaacag acaaccataa aattattttt
      181 ggtgtgctta tttgcctttc ccttgcatct atttggcctg tgcctgtaga caattatgcg
      241 ttccagccta gactcaggtg ctaataatga aggacaaata gaatcatatg tgtaaacttc
      301 cccttctgat gaaaatttat attaactttc tgccactgta aacagaactg catagctcag
      361 cgtccctgaa gaattggtga tgaattcagt catttatatc ccaggaatct gtgcatttat
      421 gggaaaagat gaaaaccgtc tgtattgtgt aaccttgcac tttttgagta agaaaaagaa
      481 aacaccagcc tgtttagttc atcacttaaa gtgtgtaaat ttcagctcaa ataccagatt
      541 tctgtaggac tcgctttcac tttggggatc cctgccaata taaacaagcc aaacagtgca
      601 gagtgccatg ttatcggtac aactgcgagc gtatacactc ccagcctcct at
//
LOCUS       KCLJ01000377             473 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 42572cal ultra-conserved element locus
            uce-1442, sequence.
ACCESSION   KCLJ01000377
VERSION     KCLJ01000377.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 473)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 473)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..473
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="42572cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>473
                     /note="ultra-conserved element locus uce-1442"
BASE COUNT          120 a          100 c           75 g          178 t
ORIGIN      
        1 cccgatctgc tgcaggtaaa ggctcagctt tctgctgatt tataaaaaga aaaatcttat
       61 attgtactgc tcacatgtgg tctctagagc gtggtcacat gaccaggata atgacaatct
      121 gtctctctgc taacatttct ctactttggt tatttgtttg ataaagtgag gagcttccct
      181 tttgttgccc ttcatcagag cttaatgtct ttactttggg atcaatatac tttatgaata
      241 attttatttc cttctatttt tatggtcttt tctcctcatt atcatactga gtttattagc
      301 tggtgctgtc agtatcttta ccctgtcata tgttcctgag gtacagtaaa tatcacttgt
      361 gttgtaatta atatgcacac cctctgcagt aattaaagca cagacccctt caaccagctg
      421 agcttcctac actaattcca ccttatcttc ataatgaact tattgtaatc tga
//
LOCUS       KCLJ01000378             730 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 42677cal ultra-conserved element locus
            uce-1810, sequence.
ACCESSION   KCLJ01000378
VERSION     KCLJ01000378.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 730)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 730)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..730
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="42677cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>730
                     /note="ultra-conserved element locus uce-1810"
BASE COUNT          223 a          118 c          133 g          256 t
ORIGIN      
        1 tgattaggtt aaacaaactg gtaggtttat ttatctccct aatacattat cagagaaatg
       61 ggaagcaatc ttcttttgtt tcttactcct gtgttcatag aacacttgcc aaagttatgg
      121 ctagccaaaa agacagaaat aaatttgcta aaaatataaa ccttctgttt agcagagttt
      181 ttgagccata ttttgaaatt gcagggccat gtttacttca aatcaagctt atagtcaagt
      241 ttgaggcttt gtttgtatag attgtcctga agtagatcct gatatttaat taaaatgaca
      301 ctaaatcaca ttgaattgat aagacttggc atctcaaaca aaggtaattg cccgtattgg
      361 ttttgtacaa aaatagagct gcttggaaaa tgtgcagcca acacagactg tcaactccat
      421 ttatagatca atatgtgaaa accattgatc aggcaggcat gtgtaacagt aacactttgc
      481 atttatttgt tgtttttata ccacgttaag gcttacagga ttatcggctt ccaaaatatt
      541 ttgacttcct cgtaaatatg ttatctgttt aatgttaatt gcaagacagt ctccagccct
      601 cttttagagt attttcagtt tcattgctgt gggtagcttt agctcaaaaa gggattattt
      661 caatctctgc gagatcatca gagcttcttt tatagtgcag tttatttagg gaaagttttt
      721 gaggatagct
//
LOCUS       KCLJ01000379             631 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 42894cal ultra-conserved element locus
            uce-535, sequence.
ACCESSION   KCLJ01000379
VERSION     KCLJ01000379.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 631)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 631)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..631
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="42894cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>631
                     /note="ultra-conserved element locus uce-535"
BASE COUNT          202 a          148 c          108 g          173 t
ORIGIN      
        1 atccctagga cacgctctta gcacttcaat gcattagcga acctttgcta acgaagaaaa
       61 aattaaagta cagcaaattt caaagcacca gttgtacgca acatcattaa aaatttataa
      121 aacttcccct gaacatgaca agtgtttggt ttaaatgaag atcagccata agaaggagca
      181 gaaatcttgt tattctttgt ctctttctct tctctttctc tcagacctcc cccaaccacc
      241 accacctcaa tccagctgaa atatgtaacc attacagagt gacagtttga cacacaatga
      301 cctgtcagaa cattcatctc tcaatgtttt attttagtga ggagccaaac tgcagaaaaa
      361 ataagcaagt tgtttcaagg cttggaatga gatcaaacat ttctggcatc cccacttacc
      421 agacctttga tttacaatgg atctgtcaga ggctgattag acagtgtgtg tttaaaaacc
      481 tatagatgtt ccacaattgc acaagctctc cccttccctt gcatttctgc tctttgtttg
      541 aatggagaga atgagccagg ttacactgca gaaccggaaa acaccacatg caaaactgca
      601 ggcagctgca attaaacctc ttaggcagga g
//
LOCUS       KCLJ01000380             673 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 43007cal ultra-conserved element locus
            uce-780, sequence.
ACCESSION   KCLJ01000380
VERSION     KCLJ01000380.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 673)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 673)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..673
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="43007cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>673
                     /note="ultra-conserved element locus uce-780"
BASE COUNT          220 a          121 c          114 g          218 t
ORIGIN      
        1 cagcatcaaa tactttgcac aaattgaagt cgatgtcagt tgcttttctc ttatcctcca
       61 acactttgtt ttagaaggcc accaaatttg tcagttcttg gcaagttgct ttttccatca
      121 actgcaaaca acgtgcttag attccctcag tgcatagttg tctaaaatag ttgtagaaat
      181 ctttggaaaa gagagtaatg tcatttcagc agtgtatcat cctgcatcag aaactaaagc
      241 atgcaaaccc aaattgattt gtaacaggta ccttattaga agcaaacatc aagaaaacta
      301 gaatcaatgt tgaaacaaaa atttgtcttg taagcaatcc tgagtgaaat gtgttgacac
      361 agcatcacat tctgtagttt ttgcatgctt ttcaaagcac agccatctcg atctgggaga
      421 gatgaataat tgactgatca ctgcataatt caacgtactg ttgtaaaaat tcaaggtctg
      481 gcaaatttga agcttttctt ctttattgag actgaggtta aagtttcaat caaccttgaa
      541 gaaacattta aatagcacaa ggatgcatga tttattaaag tgcatattat tctccttctt
      601 cattaagctt ccttacataa tgtttatgta aagtttatga agtgtacctc ataagttgag
      661 caaagatagc act
//
LOCUS       KCLJ01000381             559 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 43115cal ultra-conserved element locus
            uce-857, sequence.
ACCESSION   KCLJ01000381
VERSION     KCLJ01000381.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 559)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 559)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..559
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="43115cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>559
                     /note="ultra-conserved element locus uce-857"
BASE COUNT          185 a          108 c           96 g          170 t
ORIGIN      
        1 caagacctag ataaatattt caaaaactat actatttgtg agcagagcag gtcactacca
       61 tttcccagtg catttggagt tcatgtgaaa taagggcaaa agagtgatga gctgcatttt
      121 taacatgggc atatacagaa tagttgtcta gctgatagag aatgtgtaat gcaacatctg
      181 caccgtacgc cttgccaaag cccatcccaa ataaatgtag tgcattctcc ctagtgcaat
      241 taactcttgt actctggcag gttgtgctag aagatcatca aggtagatta ccttccagca
      301 tatgaactaa atacttacag gtgttatatc atcagttatt acttacaaac ttctgcattt
      361 aacaagacat ccaggcaaat gaatgatcta atttatgaat tatttataag aatttcacag
      421 catgctcctg gcgtcatcca tggccttttc caggtcatat gacaccaatt agagctgaat
      481 tttaaattat tcaataacct gaactctctt gtcatttaac atatagatat caatgcagta
      541 aacaagttaa gtctaatgg
//
LOCUS       KCLJ01000382             424 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 43224cal ultra-conserved element locus
            uce-3607, sequence.
ACCESSION   KCLJ01000382
VERSION     KCLJ01000382.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 424)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 424)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..424
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="43224cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>424
                     /note="ultra-conserved element locus uce-3607"
BASE COUNT          136 a           68 c           97 g          123 t
ORIGIN      
        1 gctggaaaac atgaacagca atgaaactga gaagacacta aaagaaattc ggggcaaagt
       61 gccagacgcc cagacggaag cagaatgtgg accaaaaagc ttgcgacaat tgggtaatta
      121 tggtttatga atttcagctt taatctgtag ttcagtgagt cctgattaaa tatctgttaa
      181 acacaattaa agtttgtttt tgtatttcac cgtcttgatc agaataatta gagactgcgt
      241 gtttcatgtc aaaagtagca agaggaattt tagtgaatga acatcgtttt taaaagccat
      301 ttgtagcacc agctgttggc attattttat attttagtgt tatcagcata aagatgggtc
      361 ctctcaatgc tgaatgcttt ccagcggggc taagattccg ggaaaggcgt gatacagtca
      421 gagc
//
LOCUS       KCLJ01000383             582 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 43329cal ultra-conserved element locus
            uce-6750, sequence.
ACCESSION   KCLJ01000383
VERSION     KCLJ01000383.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 582)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 582)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..582
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="43329cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>582
                     /note="ultra-conserved element locus uce-6750"
BASE COUNT          188 a          124 c          100 g          170 t
ORIGIN      
        1 tgcaagggaa gatggatcat gggaattgtg tatatgcatt caagacagct tcctttcccc
       61 ctatttaata taaccacagc atatttccgg actccagact agcagagctc tttatccagt
      121 taaccttccc aaggctgatg cctgaagtat ctaagatcac tttcaaatgc cctttctaac
      181 aagacctgag caagaggcca ctaattttca ctgaacaaaa agccactgga gagagatccg
      241 tttgtcaata tcaactggtc cagcaatttc ccatcttcag acacatcagc ctatctgagc
      301 tggcagatgt ttagacaaga ttttataaat tgttcaatat cagaccataa tgaaccccaa
      361 ctgaccattc caaagcagct aaaagcattc aggatctccc ctgctgggat ctaataatgc
      421 tctcacgctg gaacattatt aatcatggaa taaaatagat gagcctcttg aaaaataagt
      481 gtatgattga ttaaagggca atctaagaag ctattattct tgttttataa ccgtaagtta
      541 tattcactca atttatcttt tggggaaaat aaatgattgt tc
//
LOCUS       KCLJ01000384             815 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 43437cal ultra-conserved element locus
            uce-1980, sequence.
ACCESSION   KCLJ01000384
VERSION     KCLJ01000384.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 815)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 815)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..815
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="43437cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>815
                     /note="ultra-conserved element locus uce-1980"
BASE COUNT          245 a          137 c          169 g          264 t
ORIGIN      
        1 ttacagacat tagaatttcc ctatgactgt cttttgcgaa tagaatagca tttagcagtg
       61 aagcaactct ggagatttat ttaaatagct aaagagagtt ccttgttggc ttgttgcatg
      121 agttgggtgt taaaacctct ctgaccacat aatgattatg aagtagtacc tataataaat
      181 aagttttagg tcagtctcag cagagaccat actaaaactt gtttccttgc ttctcatgtt
      241 tgaaaggtag tagtgcagca tgtgtgtggt cttttttgca gacgtgatct gcatttaatc
      301 tgggaaaatt aattccctaa gctgctggca ggcagcatgt acttgttaat tattcaggtg
      361 gatgacaaat gcagagcaga ggttctcgca aagacaaagt ttgtatgatg catgtttagt
      421 aactgatagg cttgacattc tgtggtgtct tactcagtgc taatcctaat aagctgcctg
      481 atgagatgaa cgcctatcct cctgtccttt agagagagaa aacagagatt tgaaagaact
      541 tcattatagc aataaatccc atactttctg ttattccctg tgaaaagaga tcttgtccag
      601 atgaataaca cacacacaga gtcagaatac tagtgtaata cagagtattg gaatgaatat
      661 tgtgactgcc tctactttaa aagcagctgc agtttaactt tattgatagg ccaagtttat
      721 gctggttaat gctcttcaaa atctttggca ttgttctaca agtgatacaa ttcttggatg
      781 tatgatttca caaagatttg caagttgcca gggaa
//
LOCUS       KCLJ01000385             454 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 43549cal ultra-conserved element locus
            uce-3674, sequence.
ACCESSION   KCLJ01000385
VERSION     KCLJ01000385.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 454)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 454)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..454
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="43549cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>454
                     /note="ultra-conserved element locus uce-3674"
BASE COUNT          162 a           70 c           67 g          155 t
ORIGIN      
        1 gttcatcacc gccgtttaag tgaatttaat aaaattattt ttctaaactg ttttagatgc
       61 catatctata atccataaaa tttattgtac ctttatgtag aattacactg gagttgaata
      121 tataaatcaa tttataaggt ctaatgacat acaaacgctt aaaaactaaa ggcgatgtag
      181 taaattcaaa ttaccattac aaatgtaagc tttgtagtca gtgtgtgacc cgctaaggat
      241 tatatttaac tcccctgaga gtggtttatc ataaaacttt atacttttat tacagtgaat
      301 tattaactcc tccatgatgt gagtcattcc atgctctgac tatagctttt ttaatgacac
      361 tataatagac atcttgctaa tagcagtagg attgctacct ctgaggttag aaataaaaga
      421 tacaaataca tgaaaaataa gtacctgtaa gaag
//
LOCUS       KCLJ01000386             541 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 43658cal ultra-conserved element locus
            uce-46, sequence.
ACCESSION   KCLJ01000386
VERSION     KCLJ01000386.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 541)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 541)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..541
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="43658cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>541
                     /note="ultra-conserved element locus uce-46"
BASE COUNT          168 a          103 c           90 g          180 t
ORIGIN      
        1 atggaggcct gtgtgtctgg acagaccaaa tactctgttg ctgatgccat tctcagtttc
       61 gcctctctga acagacgttt tcctatagaa gatgaagagg aaaaaaaagg aaaaaacgat
      121 gcagactctg attcagagag gtgatttctg tatatcctta ctttctgaga ttatatatcc
      181 atacatacac acgcacatgc ttcacttttt tgttgatgta atactaagat aatgaaaaaa
      241 ttaattgact gacattttat tgagctgtga cagctcatca tagaagtctt cacacacacc
      301 tccacactga attaatgaat gcagtagaaa ttcaattatc tgcattctga ttatgtgaat
      361 ttcatttagt cagacttgaa ttattcgcgt ttaaattatc ttgctaaaaa aatatccaac
      421 tgcactccaa atggctaatt aaaagtccaa atttcctgtc tctctttgtg actggagata
      481 attaaagttc tcctctgtta ctcaggcttt gagtgtgttg tgaaaaccaa tttcctcctt
      541 t
//
LOCUS       KCLJ01000387             675 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 43767cal ultra-conserved element locus
            uce-3554, sequence.
ACCESSION   KCLJ01000387
VERSION     KCLJ01000387.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 675)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 675)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..675
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="43767cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>675
                     /note="ultra-conserved element locus uce-3554"
BASE COUNT          241 a          142 c          115 g          177 t
ORIGIN      
        1 cggcactgct ctttgttatc tctagttgaa agacagtaca gataaagaaa tctgccacgt
       61 gaaattttaa gactcatccc aggtggccat aaaaataaca gaatatcttt agagaccaag
      121 actattacaa tgttaaaatt cccacttaac atttcccaaa ttaaaagtcc ttccaataat
      181 aacagaaatt taaatcaaaa agcctgcatt agtgagtgct agctccttcc aactgtttgt
      241 tcagagactc tccaacaagc atacagcaca ctgtaagaat tcaatttgga aaccatcatc
      301 taaagcacag aggagaacag gaaagtcata ttgctataat gcttagatta tcaatcatcc
      361 tgacagttta ttggctttat caccacacat accattaaaa tgatgtctgg cctagaatgt
      421 caggaggcaa acattaaaca gaccaggatt aaaaagcaga tcccaaacag cactccagta
      481 aagtttccct tccactctga aattagttag agctgactaa gtaactggca ctagactttg
      541 aagaaatata cagcctaaaa ggcgcagagt caacacagac ttgacgagct gataggtaat
      601 gtcatgttat ggcaactcta aagctcctgc cgttgattta tcacgtactg tatgcaacag
      661 aatgattgct aatgg
//
LOCUS       KCLJ01000388             529 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 43877cal ultra-conserved element locus
            uce-6732, sequence.
ACCESSION   KCLJ01000388
VERSION     KCLJ01000388.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 529)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 529)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..529
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="43877cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>529
                     /note="ultra-conserved element locus uce-6732"
BASE COUNT          150 a          131 c           93 g          155 t
ORIGIN      
        1 catatgttta tgggaaatgg aacatcagac tccttaccct caaaattctt aatctccagt
       61 ctaagcactt gaacccaatg ataggcatat atataaaact ctaagtattt atgtctcgca
      121 agtttcctct gactgggaag gcttccaaat cccctctagc ttcatggatt ttctcagctc
      181 ttatgtttgc tcctgctcca cacctccccc agtgcagaga ggcacatctg tctgttttct
      241 gccttatcaa gcagacatct acatctgcga ggacttcctc agctaaaaac ctgtatctga
      301 ttgtggtaat aaagcactac ttcctcagtt caaaacattc atcagacagg accaattact
      361 tcaaatgact catagcaaca aaagcaacgc tcgcggagcc tttgaacttc cactgcttca
      421 aaggtgtgct aagacgtggt tatgaggcga ttgtctaaaa ttgccaaatt accaggtccc
      481 aagctttgac tttgttattc tgagcgatga gacaaaggca gttcattta
//
LOCUS       KCLJ01000389             728 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 43986cal ultra-conserved element locus
            uce-4895, sequence.
ACCESSION   KCLJ01000389
VERSION     KCLJ01000389.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 728)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 728)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..728
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="43986cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>728
                     /note="ultra-conserved element locus uce-4895"
BASE COUNT          131 a          197 c          195 g          205 t
ORIGIN      
        1 gctcccctct tttcccagtg cccactctcc agagagcccg ttgtgcttgc ccagcttcac
       61 ccccgccggg ccgcagtgct gagtgccctc ggccacgccc ttggtggccg tggccacggt
      121 gcccagctga gtgaccaccc tgccaccaac agctggagcc ttctcaccat tgactcctgc
      181 tgcatttttc cctttcctgg tggatttggg tgcctgcctg gagtttttcc cttgcggctt
      241 atcggttcct ttgttggttt tgggtgattt tttccgggtg gctttctggg aagagctttg
      301 gtttgtaccc acattcttgc tggatgaact tttcctcttc gattttgaca ctttgctatt
      361 ggtgctaatt tgaccagatg gctcattaaa tgttgacaag catggactct tttcgagaag
      421 gctgacagaa tcttcatcgt tgaacatatg gaactggaac tggtgattat ttaaagcaaa
      481 cccattatct gcctgatcct cggtctgcag gaccccacag ttccacttga ccttctcgga
      541 actgttgagg gaggcctggg ggctctcctg aaagcccttc agggtgccca gaggcttggc
      601 atcggagcca gctatctgtg gggacaggtt aggagtgtct ggaggggaca tctccgaaag
      661 cgacgactgg cggaacctat caggcgtgaa gttggaaatg tctaaaaggt ccgtggactc
      721 cttcaaag
//
LOCUS       KCLJ01000390             860 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 44098cal ultra-conserved element locus
            uce-6187, sequence.
ACCESSION   KCLJ01000390
VERSION     KCLJ01000390.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 860)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 860)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..860
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="44098cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>860
                     /note="ultra-conserved element locus uce-6187"
BASE COUNT          278 a          188 c          180 g          214 t
ORIGIN      
        1 gagggttgtc agcaggacaa gacaggatgg gagcagcagc caccacagga ttaacacggt
       61 ctcctacctg cctgaacttg acccggcagt ttattgcaac aaagtcagca aagaaacact
      121 cagttcaagg gttacttaaa ggcaagtgct taccaggttc cccaacaata cacatcatct
      181 gaaagctacc acaaaggacc tacaaggctg tctgactgaa ctccacaatg ccgagctgag
      241 gcctggggtt tttgttgtgt ttgtttctat tcagtgatcc tccaatgcta gcctagaaat
      301 gacagtaggt ggaaacgcta tctttcatta cacaaagtat aaatagtgta atctatcagc
      361 actgtcaatc aagatgattg attacaggct gtcatagaga agagtgacat attagaaaag
      421 ttttgttaac aatgcctatt gctagtcagc ctgccacaga agctggtgat taatgtgttg
      481 tcagcctgta atcccacacc cctggctaat gaggcaggaa tttatcatct ttacagagtg
      541 gcagatgtca gaaggaaagg aatccaagtg ctggaaacaa tatacttttt cttaccacgc
      601 ctgacaagtc tgacaggcct aaaaaaccac aaagaagctt tgtgtaagca caaacttaaa
      661 atgaagaact ttcatttggc atctttgctt taaatagtgc tgcaaatcag cctctatccc
      721 tcaaaaaggg cacaataaaa agctgcatga actctgaacc catccttgac aactaggaaa
      781 tctcaggaaa ggtttccatg ggagacaaac agagagcttt ctccatgaga gaagcagcaa
      841 gtaactttta actttacctg
//
LOCUS       KCLJ01000391             700 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 44321cal ultra-conserved element locus
            uce-4171, sequence.
ACCESSION   KCLJ01000391
VERSION     KCLJ01000391.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 700)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 700)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..700
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="44321cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>700
                     /note="ultra-conserved element locus uce-4171"
BASE COUNT          196 a          144 c          151 g          209 t
ORIGIN      
        1 gatgctgcag gtttaattaa gtacgtggca gttaatcagc cactgaaaac aggggcctcc
       61 actggggaat tacctgagtg aaaacagacc aaacatgaag gggctccctt gaaactctag
      121 tacttgtgct tctatggtga aatggaaaga aagttatcaa ataaaatctg tttgcttgtg
      181 gctgtactgt gacagctttg ttagtcctaa cagatgacaa ggattattca atcaatatag
      241 atttaccttg agagttttgc tgttttcagg cacctccagg aaaatgacag ccattaaata
      301 tgtacaaagg ccagtccagg gcctgtggcc tctagcttta agctgctgcc ttttctgagt
      361 tatgtcagga tcaatttttt ctaatagata tcacttatcc tacatgataa tcaggctatc
      421 atagtccatt gattacatga cagcctgatt taggtctggt ctagaagata agaaacacag
      481 ggaaatctct tgcctgtatt gtcagggaat tcaattcctc tttttcccct gaagttattt
      541 cctgtgtgca gaagccaagt gagctgttga ccagttaccc tccctcatac cactctcact
      601 cctttgtgga actgcgaacc agagctgaaa acttgaatcc agcattttgt catccgagta
      661 tggaaaggta gttagcactg attgctggtc cagtatgagg
//
LOCUS       KCLJ01000392             665 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 44427cal ultra-conserved element locus
            uce-2140, sequence.
ACCESSION   KCLJ01000392
VERSION     KCLJ01000392.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 665)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 665)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..665
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="44427cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>665
                     /note="ultra-conserved element locus uce-2140"
BASE COUNT          220 a          140 c          105 g          200 t
ORIGIN      
        1 ctacaacttt acaaagttag tactgctgct actcctggca cagctgaaag gtctttgttt
       61 ctgtaaattc aatcgagtgt tcctatttct aagtctagca agaggttcta attattgtta
      121 gaagcctaat tagcatttag tattacatta caacaactgc agcaaaattg tacccgttct
      181 ccaataaaca gtattcacag tgtgcaatca agctgctgta cgatgcaatg agaattaata
      241 gcactgcacg acaatggtaa atcctacaac tcccgctgtg tgtgtttaat aatttttcac
      301 tccttccaga ttgttcccat caagcgcaat tcccaagatc ctaatcagct ttcctcccca
      361 tcaatactac atagagatct gagcactgaa aattatctgc aatttcaaaa agtgctttgt
      421 tgcattatta ggccactgac ctaagaggta atgggtaaat agtttctgaa aaatgtccaa
      481 agcacaacat aaattaaaga ttatagtctt gcctgctgtt cttaccagag ctgtaactgc
      541 aaacttacat aaaatcctta actacagtgt tatacacaaa aattagtaca aagatggcaa
      601 ggtttatatt taaataagtc cctttgccat acaaataata caaagttgga gagccacgag
      661 cacct
//
LOCUS       KCLJ01000393             688 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 44538cal ultra-conserved element locus
            uce-1566, sequence.
ACCESSION   KCLJ01000393
VERSION     KCLJ01000393.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 688)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 688)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..688
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="44538cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>688
                     /note="ultra-conserved element locus uce-1566"
BASE COUNT          198 a          126 c          117 g          247 t
ORIGIN      
        1 ttgagacaat acagtcattt aggatatatg tggtatttta agataagagg tacaaccctt
       61 ttgccacatc cttgtttaca gaatctgatg aaaacttggg taaaagcatc tgtatttttc
      121 tcacatagtt agatgattac tcataaatta acatccttgt tattaatagc tacatcataa
      181 agccattttt ggagggggga atattacact tttctctatt tatatcccat gtgtctgtcc
      241 tctgtcattc tgtttctctt taatcttgtt tgagtatacg gctcactcgt ccttatttta
      301 ttgactcaat cacaggcaca ctgtcacttt ttataaaacg gtcactgcag aatcacatca
      361 agcaaattct tgattctgca gtcagtaatt tagtgccttt atggaattgc aatttcaggg
      421 ctcactgctt gtttttctaa aatgtacttt aggaattagt tactccagcc acaaatcagt
      481 tgaatttatg cacagttgta atacagttta tggcctcatg gtacattgct tcaaaaacag
      541 cagatgtgaa attatgataa atataatgag tgtttttttg cctgatctac tgaagtagag
      601 aaggatctgg agcgtgttta cctatcccat acagtacatt taatgtctta gtcaggactc
      661 ctgacaaagg ctgattaatg tcctcatc
//
LOCUS       KCLJ01000394             622 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 44754cal ultra-conserved element locus
            uce-23, sequence.
ACCESSION   KCLJ01000394
VERSION     KCLJ01000394.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 622)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 622)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..622
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="44754cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>622
                     /note="ultra-conserved element locus uce-23"
BASE COUNT          209 a          115 c           98 g          200 t
ORIGIN      
        1 atacagatat atagaaataa aattagtatt agtctttcca cataaaagtt cacactgcac
       61 aaaacatttt gtgttgagtt ccctaaatca atgtttaaag ttgaaattac tgcattcaac
      121 gggttcttcg aaaagcaacc cattgatttt aatctgcttg aagcaatcaa ttactccctg
      181 tcctctttat tccaaactgt aatgaaaact aaactgcgtt gtcttgaaaa ctaaatgtga
      241 agatgatcat aaacagaatt taaactccat ggattattca tatctaccca tttagatttg
      301 ccatttccat tatgagtaca tttgccatga gcatttaatg gacatctaaa agggaattca
      361 ttaaagcagg agctgttggc agcacttatg ggcttcagac tgctttatgt ttgcctttaa
      421 tagctcacta ttataaaagt gatatattgt gttcatccca ttagtagttt gcagagaggt
      481 ctctaagaca taacaaatcc ttttgagtat tgtcagaatc aaaactaaat cacaggcaag
      541 cggcatcccc aacaaggtac cattttaggt catctaaatt ttgatgatct tagccaagta
      601 agaatttaat ggccctacag ac
//
LOCUS       KCLJ01000395             615 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 44863cal ultra-conserved element locus
            uce-6582, sequence.
ACCESSION   KCLJ01000395
VERSION     KCLJ01000395.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 615)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 615)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..615
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="44863cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>615
                     /note="ultra-conserved element locus uce-6582"
BASE COUNT          166 a          134 c          111 g          204 t
ORIGIN      
        1 aagagcgttg tcattatttc ggctttcagg gttcatgcat taccttttcc tacaggctgc
       61 agctttgcct ttttattttg aggaattcaa aaagaactca tctggaaatg ctgcttgtcc
      121 attagtgcta ttgtttcttt aaaaagctat accagtttgt actatgactg atcaaaatga
      181 ctatcagaaa caagacacct cattttgtct ttcttgccaa ctattttagc ttatttgcca
      241 tgagcacagg gtataattaa tatcacacag gagccagcat tgtcattttt caaatcattt
      301 ccctggaaat gttctacacc tcttaatggc cctgctaatg ctgtagctgt catgttttgg
      361 acagctgcgc ttttacaaga caaactcagc tgcgccatgt gcctctctgt agacttttta
      421 gctcaacggc tcagaggcca tgaatgccag ctggtaacgg ctatatggaa atctttgatt
      481 aattttttta cctctagacg ctgactgttg ctcaaatgtc accttcccag ttttcatccc
      541 tagccagtat tgatggatga agaatcaact gaatgggcca aaaatcttat gactaattaa
      601 agcaaataca gcctg
//
LOCUS       KCLJ01000396             574 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 44968cal ultra-conserved element locus
            uce-3517, sequence.
ACCESSION   KCLJ01000396
VERSION     KCLJ01000396.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 574)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 574)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..574
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="44968cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>574
                     /note="ultra-conserved element locus uce-3517"
BASE COUNT          164 a          116 c          111 g          183 t
ORIGIN      
        1 gaaggcattt cttcatattc tcagttaatt cagtctaaaa gtgtcacact tattcagcag
       61 cagttaaaat agtctgtgat gagagcatga caatttccag ctaaactaga ggataattag
      121 aaatgccccg tagcaggcaa gtcagtgctt caatttattt gctgtttatt accaagtccc
      181 tgccccttgg gtgtaatgac tgtaaagcag cacctgcagc ttcccagtgt ttgatttagt
      241 gctgtgaatg gtgctcagag agtagattaa gctggaatgt gatcaaacct tatttgcaat
      301 ccgattatac aaactgctcc ttgcactgac cagattgaag taatttccct atagaaacgt
      361 tacactcact ttggtgtaaa aatgattaac atgtgctgac tgtaggtcag cctttcactt
      421 ccagtgtaat tctttatcag gcaggatgcc catctttttc ttgtgtttgc cacatttgtg
      481 taccatgcgg tatttaacca atggatataa tcaacctccc aggtcttctt gatgaatgat
      541 tgtaataaat aagcactcca gcataagcag atta
//
LOCUS       KCLJ01000397             468 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 45072cal ultra-conserved element locus
            uce-4835, sequence.
ACCESSION   KCLJ01000397
VERSION     KCLJ01000397.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 468)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 468)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..468
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="45072cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>468
                     /note="ultra-conserved element locus uce-4835"
BASE COUNT          168 a           78 c           83 g          139 t
ORIGIN      
        1 actaacattt caggtcatca gataactcaa taaaatacaa tcttaaaaga agtaagaaag
       61 catgaataaa aatatataca gcaatttctt gtgtagtcaa agtatcagca ttttccatat
      121 agaacatcca atattttgct gcattttaat taaggtgtct aaacattatc acaaagaact
      181 gcaaattggt cagagcacgc agtaaggaaa attaagctct aaaggctttt tatcaccata
      241 tttcaggaac caagggtgta aaatgttcta atttgggata tattaaaagc cataaaaggt
      301 ctttcaaaaa gattaatggt actttgcttg gatttaagat aagggcttta gctggttgga
      361 aaagcagggc cctggctaga cccttgaggc attcatcttt acagccactt ggaagatttg
      421 taaaagcgtc tgcataacct caagcaaacg cactgcgaca tttttttt
//
LOCUS       KCLJ01000398             741 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 45180cal ultra-conserved element locus
            uce-893, sequence.
ACCESSION   KCLJ01000398
VERSION     KCLJ01000398.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 741)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 741)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..741
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="45180cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>741
                     /note="ultra-conserved element locus uce-893"
BASE COUNT          236 a          118 c          129 g          258 t
ORIGIN      
        1 tgttattttc tctgctcaag gatttttaca tcttgaaatc aaagtagatg tttctaaagt
       61 cactcatttt aaccagaaaa gtttgctttt atcatgttat tagtcttggt cacttgtact
      121 taattaagat ttcagatgta gagttgccaa tcaacgtact aaatgtacct ctcttctctg
      181 ttttcacaag caggcaccag gagattcaac acagtagttg atagctggta tgtgatatct
      241 gtctcctggt ttatagcctg gtacaataat gtcattgccc catgtggcaa atggtgtaag
      301 ctattgtaaa actgtttgtc tatgtgatta agacattgca gcagtgtgca gcaccagcca
      361 attacttttt ttaatttaat tatagcagaa aaaagagaat agcataatag aaattcttgt
      421 catagggaat atgtaaaatg taaattgaag agccatgaaa atttcatgca ttggcaggct
      481 gatttgttct tattttcaac ttgttatgaa gactgagttc tttaaatgca ataaaacaag
      541 acatagcagt gtttagtaat tacttagttc tacatcaaaa taattatata cagtatgtgt
      601 ttgcaatcca ctctgctgcg tatgaatgta aaaatgaaca cttcagggcc catatcaatt
      661 ttgtctttta gacagtgtaa ataaagctga atcttcaact ttcaaattaa aactgataac
      721 cttgggcaat cagggctttt a
//
LOCUS       KCLJ01000399             675 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 45292cal ultra-conserved element locus
            uce-6621, sequence.
ACCESSION   KCLJ01000399
VERSION     KCLJ01000399.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 675)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 675)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..675
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="45292cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>675
                     /note="ultra-conserved element locus uce-6621"
BASE COUNT          217 a          143 c          103 g          212 t
ORIGIN      
        1 tttgtacctg cgtaccatgc agaaaacctg aagtgtaaag tttgagaaaa caggtttccc
       61 aagaccacaa aaaaaaatca tataaattcc tctgagtaca ctaacagctg tgcccacttg
      121 ccaatgcatt tgaggttata cacaaagaga aacaaaacca tggtctttca ctttaccaca
      181 accttagagt ttagctttaa atgatttctg aggaaaggct tcctgcagac ttttcactta
      241 agtagttgta actacaactg caaaacactg ttgactggtg gactccagag acttgttcat
      301 tacctgtcat taaatgtttt aaagtttgca taattgatcc agccaataag tcatcattga
      361 tttatagggg tctgtgctga agagttgctc attaaaaatt cataacactg gtatgtgtct
      421 ttacaatcca ttagctgttt acgtacccac agtcctaaga ttgattgacc ttggactgag
      481 attctcatgg actctgctca gaaacccccc ttttttttcc ataattttac acaagtcgac
      541 agtatagaaa agcaatactt cagacttctc ccttgacagc tatactttga tttttcctct
      601 ccatcaaaac tgaaacttta cttgaaataa tgaataaata aagcatactc cataaacagc
      661 tttccactat tattt
//
LOCUS       KCLJ01000400             540 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 45405cal ultra-conserved element locus
            uce-3785, sequence.
ACCESSION   KCLJ01000400
VERSION     KCLJ01000400.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 540)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 540)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..540
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="45405cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>540
                     /note="ultra-conserved element locus uce-3785"
BASE COUNT          175 a           91 c          119 g          155 t
ORIGIN      
        1 ctgttgtctg cacttatctg cctgccctgg tcctagactg gcatttgttc cttttgtgat
       61 ggtttgggga aggagaaaag catcactgag agatatttac tgcatgtgtt ttcatcctgt
      121 gtgtgtgcag ataaaggggg gcaaataaac aataaaagaa tggaaacaaa attaccgaaa
      181 tttgcaaagt ttgacaaatg gtggccagga gttgccacaa gctaatggct ttcaatgatt
      241 aataagagta aaaataattg catttcatta agattgatga caccccattt aacctccctt
      301 ctcgtttcag ccctaaagtg gaaagagatg aagttctcat ctataatagc tcctgtaaca
      361 ttaccatgga aactgaggca gagatggagt gtgagggagc taatcagcca attactgcca
      421 agattactga gatatggaaa aactggggcc agaacactca ggtataatca aatctttttt
      481 acagactgat tcaaacagct taaaattaaa tttgtaatat tgtgtacatt taaagggggg
//
LOCUS       KCLJ01000401             445 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 45516cal ultra-conserved element locus
            uce-7882, sequence.
ACCESSION   KCLJ01000401
VERSION     KCLJ01000401.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 445)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 445)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..445
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="45516cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>445
                     /note="ultra-conserved element locus uce-7882"
BASE COUNT          112 a          127 c           93 g          113 t
ORIGIN      
        1 gagctggcct ttgttcccag tgtggctccc acagcagccg gcctgggctt gtcccccatc
       61 actcagttca tttgtacaga gctgtctgtc aaggcacatc gcccgctgca atctgaaaca
      121 ccctcccaac agctgccact atcaattact ctcccaggca gccctgacta tcaggaagag
      181 aactggagcg agcacttgcc agttttaata aactgtgttg cccaagtcat ttaacctgct
      241 agattgctgt gtgccggggc tgtaacaagc cttcagcttt tcgacctaga agaaagcaac
      301 agtggcaaaa agctgtcagc ttggtcctca gaattaactt ccaagggtat cttcccctcc
      361 ctcctgaagc gcccaagttt aaaaagtgaa atatcttcga gtcattttca taatgtcacg
      421 acacggaaag cagctctcat tttta
//
LOCUS       KCLJ01000402             817 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 45626cal ultra-conserved element locus
            uce-7903, sequence.
ACCESSION   KCLJ01000402
VERSION     KCLJ01000402.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 817)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 817)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..817
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="45626cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>817
                     /note="ultra-conserved element locus uce-7903"
BASE COUNT          186 a          213 c          208 g          210 t
ORIGIN      
        1 aaaaatgagc aaatgtagcc aaatgacaga gtgtaaacaa cactccctga actaccgggg
       61 acatcaggct caaacgcccc gcgtgcttcc ttcccgcagc ctcgtctccc gctaagacct
      121 caaagggtta agcctgcaaa ttgccttgct gtgcttctgg gacagcatga aggatggctg
      181 ccattgccac ggtcagatat gacagcgcca atttgatgtg ctgccatcaa gggccttcta
      241 agagccgagc gccctgatgg ttttgtgatg cgaacagtcg catcgcaaaa tggttttcct
      301 ctcccgctgc ctctgcttcc atctgctgct gggccaaggc acagccggct gcctgcctgt
      361 cacagcatgg attaaaatta gctggggagg aggcactcag ttgtgctaat tacattttaa
      421 tcattggaaa tgtgttggca aatcaagcct tgattgccat ctcggagcct gtctcctcca
      481 gcagagcgga ggggctgtct gcattagctg ggccctgctg ggcccagttc tctcacagaa
      541 gatggaatat ggtgcctgct ggcccaccac tgagactgct ttggcacatt attaaaaagc
      601 cacaaggctt gtttcaaatc atcactgtgt gagctctgct cattctcaca tccctgggta
      661 ttccagccac ttggtacttt taactagatc tttagtttac cttgtgggct caaaaacaat
      721 tttgcatgcg tgggtggagg aagccagagc ttttctgcag ctcatggggt tgggaacgga
      781 gccggttgtc aaaacgcctt tcttgtcagc tgtaagg
//
LOCUS       KCLJ01000403             522 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 45739cal ultra-conserved element locus
            uce-6534, sequence.
ACCESSION   KCLJ01000403
VERSION     KCLJ01000403.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 522)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 522)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..522
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="45739cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>522
                     /note="ultra-conserved element locus uce-6534"
BASE COUNT          172 a           80 c          109 g          161 t
ORIGIN      
        1 agggaaggtg taaatatcat acatacatac agtttgtata tgtacatgta atatattaga
       61 catatatcat caagtattta atggttaata cgaggaaact gatgtcattc catgaggaac
      121 aatggtggca ctcagccatt tctttcctga atagctgctg tgtttttaaa aataaaaaat
      181 cagggagctg ctgtagcata gtctgtagca ttcacagcat gacaaacaaa ttagaaaaca
      241 gcagatgcag cacaaattaa gatgtattta gcacagcagc ccatcagatg tgtgaaagtc
      301 ttttgtatat cagctttgca aggttgatgt attgcacttt agacagctga taatgaaccc
      361 ttctagcaat tagaggtgga aatactgagg atttgaaatc gtgctgttcc cagtggggga
      421 aaacccttag tgagaaattt actgctttgt gtgtgtgcac tgagcaaaac aaagcaaatg
      481 tttcagttta tgcgcatgta gattttgaat ttcttattta ta
//
LOCUS       KCLJ01000404             676 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 45843cal ultra-conserved element locus
            uce-2335, sequence.
ACCESSION   KCLJ01000404
VERSION     KCLJ01000404.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 676)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 676)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..676
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="45843cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>676
                     /note="ultra-conserved element locus uce-2335"
BASE COUNT          204 a          134 c          112 g          226 t
ORIGIN      
        1 ttcttttgac actgcatctg tcatagcatg tctgacccag atgtacagag tgagcccagc
       61 agattatttg tcaaacaaat tctggaacct aatatttggg tcttttaatt taattggtat
      121 gcaaatcaaa aaaagacagc atttgtgttt gatacagttg tcacttctaa ttctggtaac
      181 attcattatc atgcttacag atcttacact gaacatctgc caatactacc taaaccacag
      241 gaagttgaca aacctgtgca aacttctccc tcctgctttt tgttatctgt tccatgcaca
      301 ctaattttgt gcatctgagg cctctgctcg ccagaattat gcctgcttcc taacacctct
      361 gcctccagag ctttggattt gaaattgaat agacacagag ccaatttatc ataggatgac
      421 atgtgtcatg ttcatggtat aaccagaggg acctactgta tgcactgtat ttatcctttt
      481 gttgtcaaca tggacaaaga caataccagc aatagaaaga tattaaattt ttgaaatatg
      541 atactattta actgttgaga attgtaattt ttaaatgtag tttcattttg tttaacacca
      601 gatttccttt gtcagataat catctgtcat tcaggcatgc agcacaataa aatatgtgag
      661 taccaaatag cagtgt
//
LOCUS       KCLJ01000405             451 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 45954cal ultra-conserved element locus
            uce-7340, sequence.
ACCESSION   KCLJ01000405
VERSION     KCLJ01000405.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 451)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 451)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..451
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="45954cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>451
                     /note="ultra-conserved element locus uce-7340"
BASE COUNT          131 a          101 c           99 g          120 t
ORIGIN      
        1 aaaggcccca aacctgcagt tttatgctgt gtcagggacc caatcttctt ttttgcacca
       61 gcaccacctg gctctgtgtg tctgtgcaga aaacacacag atttccttgc ctaccacttc
      121 aaaagcagcc catggaaagg aatcctgtac tattagaaga tgacctacag cagtgggagc
      181 agtgccagca ttacctgtgt ttctagcatg cattaaccgt ggagagtttt gtaaggcttt
      241 atcaacatca tctgaagtca aatgtggaag aggagctaca aaacaaaaca aaaagcaaca
      301 ccaaactgtt cgtgaattat ctccctgaca ggattgcctg agtttggagg gaggttaggg
      361 cattcattta tccaatcaca aaatttagtg tgcgtgtgga ggagactgca ccgcactggt
      421 gttgcaatgc tctctaaaaa ttttaacttc t
//
LOCUS       KCLJ01000406             886 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 46064cal ultra-conserved element locus
            uce-671, sequence.
ACCESSION   KCLJ01000406
VERSION     KCLJ01000406.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 886)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 886)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..886
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="46064cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>886
                     /note="ultra-conserved element locus uce-671"
BASE COUNT          229 a          215 c          215 g          227 t
ORIGIN      
        1 actctgcgta caaaggactc caggctggaa gtttctcgag atgataagtt cggaacactt
       61 gcactggagc tcatgggtgc cccagcagcc aacaaagaac tgactgagag tctgttactc
      121 gctgaagagc ttaggggtcg ttgggaagct gcttctttat tagtcagttc agagactgaa
      181 ctcacatcag gagagcttac actaacaatt cccatggata tagcactgga ctccccagga
      241 gtacgtattg agttatcagg acctaacttc ctctctgcat tttcgtttcc catgtccgct
      301 gttaaggtgc tggtgctcgc actggaagat gaccctatgt cagcctgagg cacactgtca
      361 gcagaagaca gaacaacaat tggttcatgg acgtcagtgc ctgaaactat attttgttcc
      421 aatacacttt ctgatctccg ctccattttg gtcgaaccca agctgatgtc gctgctactt
      481 gccacgctac acacagaact gctgcttcct tttctacttg aggagcctgc agcagcagtc
      541 gtcttgtctg gacagttgtt tttcaccaag ctgctccatg actgcgttgt gcctgaaaca
      601 gtggatgaaa caggtttggg tgatgccgct gaatcagggt cgtaccctgg tgcaagcttg
      661 aggtcaaact ttccttctgc gcccatacgg taagagttag agccaccagc atcccaggtg
      721 acatcaatcc agcctggaaa gggacaggag tttgtgagat ccagcagaaa gcagacagga
      781 ggcgagtcag acagtagctc cacaatgtgg gatcagcttc tcatgtctga atcaatacca
      841 ctaagtaaag gaagtgctta aatctaaaca atttaggatt tcgtaa
//
LOCUS       KCLJ01000407             743 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 46176cal ultra-conserved element locus
            uce-5196, sequence.
ACCESSION   KCLJ01000407
VERSION     KCLJ01000407.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 743)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 743)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..743
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="46176cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>743
                     /note="ultra-conserved element locus uce-5196"
BASE COUNT          252 a          134 c          137 g          220 t
ORIGIN      
        1 aatttgtctt ttagaatgac aagttatatt gagtgatgag tggttgaatg agcaaggtga
       61 attgcaggct tttccactag agattacggg caaatgaaga cacaagtgaa atgagtgtcc
      121 aacatcaagc acattttctg aagactaaag gggatgagcg tttctaaaaa aagaatgact
      181 aggagtaaag aaaaaaaggt acattgtgag tacagtcttt cctcttagag cattgtgcac
      241 atcatttact cttttttcac aagcacattg ctgagtaacc ttttatgatc taatgaaaga
      301 agtccatacc tttcctgatc cctccatcag tagcacacgt gtaatcacct gttgtcagta
      361 ggaaacatgt tccccctctt ctgtttttgt ctcttgtact agaacgtctg atgggaggga
      421 gcctttcacc aggtgagagt ggctgctcac ttcctgcact gtcttcacct gataacactg
      481 gttaaagcac catgcccatt tacagacaat aatgaatgag gaaatgagac atcacaaaga
      541 gcttacgctg aatgccagat attcccatca ctcaaaaagt agatataaag taaatcatta
      601 gaagaaaaca agattgcaat tcatcattaa tcagtacaaa atatacatgt tttgttcaag
      661 aataaatgat cttttgactt tcctgttttc ttctaaaatt tgaataaaat tagattaaac
      721 taagatgaac taagaaataa tca
//
LOCUS       KCLJ01000408             784 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 46286cal ultra-conserved element locus
            uce-2142, sequence.
ACCESSION   KCLJ01000408
VERSION     KCLJ01000408.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 784)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 784)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..784
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="46286cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>784
                     /note="ultra-conserved element locus uce-2142"
BASE COUNT          224 a          146 c          137 g          277 t
ORIGIN      
        1 ctgctgaagg tctcaataga aaacatttgg attctaagaa tttgcataat tttggggaat
       61 actttgtttt caaagtaatt ctctttttca cctgcttagg acttgaccat gtatggcttt
      121 agttaagttt tgttgatggc agctcatgtt taaccaactg tttttaattt acaaattaaa
      181 cttgtcagaa gtagaaatcc ttcccttgga acccttccaa tatgtcaaga attaattcta
      241 atgaaaacgg cattgcctaa atgcaggatg gccagttact tactttattt acacaaagtc
      301 cttctcagtt tctttgataa aagcagctaa atctttttcc tctttcatgt tttgtcagca
      361 cttgattcct tttgtcccct ggctatttgc ctagctgtgg acaataaggc aggaagaata
      421 gaagcagatt gttggaatgg ccctcaataa acctaattat gacatgttga ctgcactcac
      481 catgacatat tcaggagatc caggcttatt caattaccct tgccaggttt ctctttcaga
      541 cctaaagtta tcctttgact gtttgtattt ctgaacagta ttcatgttca ttgtgaaaga
      601 aaatcccctg gactttgagg ggtttctaag ttgatgctgt tattgtagct aatttttatt
      661 aactgaatga taacatgata aagaaataga cttttgttat gtaataagaa caaatcagtg
      721 tgtgcttaaa gttacacctt tctttccccc cctgcagaag actggcagct aacttgagct
      781 aata
//
LOCUS       KCLJ01000409             711 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 46398cal ultra-conserved element locus
            uce-3619, sequence.
ACCESSION   KCLJ01000409
VERSION     KCLJ01000409.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 711)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 711)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..711
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="46398cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>711
                     /note="ultra-conserved element locus uce-3619"
BASE COUNT          190 a          140 c          154 g          227 t
ORIGIN      
        1 aaaaccttac tgtctgggtg tgcttctcaa tgtcttaaca atgtccacct cagatgtacg
       61 ttttcttttt cttgaatagt ggtcaaatat gcaggctttt ccctttcatc atgtcacaaa
      121 ctttggttcg tgtaacatga tctgttggtt gaaattttgg gagggcagtc agaccatgtt
      181 tgctctccat gtaaaatgat gagcacccac ttggtcaaat agtaggaaaa ggcgcctttt
      241 tctggcctca atttgaaata atttcaaatc tttgatggac attttttgtt tcctaaagaa
      301 atacttactg gttgctgtag gtgaagatgc ctcaccttca gtggatgtag tgatgggttt
      361 agtatctgtc atggtcaggg tcacaggtcg caccgcactg tgatggggag agggtgccaa
      421 aactggagta aaatggccag gcactttccc tactacttga ccactgctgt taggctacaa
      481 aacaaaacca aaagaatgcc ttgtgaaaca tacatgttgt gtttaaggag cctaccattt
      541 ccagaattgc cctgtgcttt ggctctaaat aggctatgta tttccatgtg atattttagg
      601 tcccttttca gattcttcta cctgggtgtt tcaaaatatt tttgaaatcc catgacagca
      661 ggagtaaact gaccaggcac aggccctaat gtatgaagta ttaagagcaa a
//
LOCUS       KCLJ01000410             593 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 46510cal ultra-conserved element locus
            uce-3546, sequence.
ACCESSION   KCLJ01000410
VERSION     KCLJ01000410.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 593)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 593)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..593
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="46510cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>593
                     /note="ultra-conserved element locus uce-3546"
BASE COUNT          178 a          121 c           81 g          213 t
ORIGIN      
        1 agtttacaga tcaagtcttc ctagaacaaa ttaaacacag aacattatag tcaagttacc
       61 gatataattt tgcagcttta aaaattcaat gttcttagca attaaactgt acaatgaagt
      121 tgttttgctc aaacttgatt cttaacatgc atgcattttg gaaggttgag atgctttttg
      181 tcaaaaatta gtttttgtcc aggtaatgta attgatgaaa gttttactct atacagtttg
      241 aaatgctcac tggtactcta cctttccaag ggaaagacag aaaagaaacc atgactatga
      301 ttctcaagtg agtacactct tatttatata tctcatcagg tattctacag ggatgccctc
      361 cgggctgcaa tatctaattt ctactcctcc ctcattttca aaggtactgg taaatcctca
      421 ctccctattc catattatta attccctttg ctgcctatct aatttgcttt ccgccatacc
      481 aggtacaaag gatttcatag cagctctgta ataataactt ctcgaaccac atgatctctc
      541 ccatcttatt tccataatat tttttaactt tcttatcctt tttgataaca tgt
//
LOCUS       KCLJ01000411             826 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 46618cal ultra-conserved element locus
            uce-334, sequence.
ACCESSION   KCLJ01000411
VERSION     KCLJ01000411.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 826)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 826)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..826
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="46618cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>826
                     /note="ultra-conserved element locus uce-334"
BASE COUNT          239 a          189 c          167 g          231 t
ORIGIN      
        1 gaatccaagg ctccactcca gccctggctc ttgcacctat gcatgaaaaa cattaattac
       61 accgattagg caccccagca taaccgagtg gcgagctgaa gttgcacgag cccctgcacc
      121 tttaggtacc ccgctgtaaa catgggctgt ctgtccataa tttattagtt gcaagcattt
      181 aacttacact cacttgagca gaattaagag tgtttatttt cctcataaga gggcagtcag
      241 atatgtacca attttgtttt aactgtggag agcagggagc tgggagcagt gtggggaaga
      301 gatccaggaa ggcctaatca atcactgaca gattacagct aaagccactt ccatacccat
      361 taaagcagga caaatgcaga attgcaactg aacaacttct agttttaagc caacagtggg
      421 acttcctagt tatttatcaa agtcattgct ggtaagcagc atgcctcact gctcaattgt
      481 acttcacagc agacagagct gactgaagct tcagccatga aagaagtgtt tatgccctca
      541 gctgtggtgc tgtcagccct ctggaattta ctgtaaatca cacagctttt attgcaagat
      601 ttagtagctg atcctctgtg ggctctattc actgcaagct tgttactatt tggatgttag
      661 cctcagtcca taaagggact tgctacacat catcaaacag cagcggaaaa ccaaaggttt
      721 catttttcaa ttttctaaac cctaaactcc tcaacagtca ttgaatttca ttgcagaaag
      781 tggaagtcta ctttattatg gtactcaatt tccccaatgg agttat
//
LOCUS       KCLJ01000412             517 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 46729cal ultra-conserved element locus
            uce-3350, sequence.
ACCESSION   KCLJ01000412
VERSION     KCLJ01000412.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 517)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 517)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..517
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="46729cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>517
                     /note="ultra-conserved element locus uce-3350"
BASE COUNT          165 a           97 c           90 g          165 t
ORIGIN      
        1 gtgtgcatgg ttgtaatgac atttcctgta tcacatctat caggttacaa acagctaata
       61 attttcttct tctactcaca gccgagcata atggcataca ctcataaatc aacaccaaca
      121 tggaacattg cttagcaaat ataaatgtat gtgcattgca gaatgatcag agattacgaa
      181 aatatatcag aagtcaaaag tagctgctgg agaaatgcta tgtctttagt ttattgagat
      241 tgtttggagg atcctaatgt actgtcactg aaagaataat ttttccttta caatctactt
      301 agcaaagatt tattgatcct ttttcccttc atagagaatt actgatccat tttagaaaat
      361 cagattttca cacctttcac gagaatgtgc agagcacagt tctctaggga ttgccaagga
      421 agttgacttt gacatgaaat ccctaggtac cggcacacaa ctgcctatag tctcatcact
      481 gatttgttgc acagggtggt aaaatacttt tatacat
//
LOCUS       KCLJ01000413             355 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 46837cal ultra-conserved element locus
            uce-6991, sequence.
ACCESSION   KCLJ01000413
VERSION     KCLJ01000413.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 355)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 355)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..355
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="46837cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>355
                     /note="ultra-conserved element locus uce-6991"
BASE COUNT          101 a           79 c           80 g           95 t
ORIGIN      
        1 aggaagatac acaagtgtgc caatgtaaat tgctccattt ggagggctaa ttgcactaaa
       61 aggcagcctg atctgtggtt tttctctatt ttacattagc agctgagctg tcagatctga
      121 aatggaaact catttttaag gctttgcatt tacagtggct tcaacaatga aaaatgttcc
      181 ctgacagtaa tagaaggcaa acctcattag agaaacttaa accaaagcgg cacagtgcta
      241 aagccctcag gctgcttcca agcatcttaa gagggaacaa gagcattttt cacatgactc
      301 tctctgcccg tggagtgctc tggctcttcc tgactggagc tgtgcccgca ggagc
//
LOCUS       KCLJ01000414             607 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 46934cal ultra-conserved element locus
            uce-5932, sequence.
ACCESSION   KCLJ01000414
VERSION     KCLJ01000414.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 607)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 607)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..607
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="46934cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>607
                     /note="ultra-conserved element locus uce-5932"
BASE COUNT          200 a          142 c          109 g          156 t
ORIGIN      
        1 atctccttta atgatggaac cctagcacca tggttttatt tttcacaaca cggtgcagtt
       61 aagaacccca ctgttattat gaaaatttcc tcagcaaagg agctccatca cattaccagt
      121 gcaccgattc atcataacgt gcctcactcc tgctcatcaa caagtctgag tgatgaaaag
      181 atccaatatt atcctgacag tacttcatgc acattctcaa tcacacatta ttacagcatc
      241 catattaatt ttcactgaca cgcgtcctag gcctgttcaa attaggcaaa ccaacgaggg
      301 ggagttgatg aaataccagc atagccacag ctcattgcat tccaatttgc atgcaaatgg
      361 tttatcagga aaattccatt cccagcaacc agcaagtgaa aaacaaccgt aatctacact
      421 tcagggccac catacagagc ttaatgaatc gcaaagagag aaggaagtga cagacctatg
      481 agaggatcga tttccactgg cagctggtaa ggctggtctt gtacagcacc ttgatgagct
      541 ggaattcagg aaagaagatt ttaaaacttt gcatacatga agccacatat attttataaa
      601 tcaaagc
//
LOCUS       KCLJ01000415             660 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 47045cal ultra-conserved element locus
            uce-3008, sequence.
ACCESSION   KCLJ01000415
VERSION     KCLJ01000415.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 660)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 660)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..660
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="47045cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>660
                     /note="ultra-conserved element locus uce-3008"
BASE COUNT          197 a          121 c          121 g          221 t
ORIGIN      
        1 gtgggagagg aggcagctca tctccctgta tggagcctaa ttcgtgtctg ttggatttaa
       61 atagctgcaa cagaaagaca agtgtctgga ggtgacggtg ttctgctctt accaacagat
      121 gacaatcatg tcttatggtt tttgatttga cagaatggtt catttcatca gctttcgagc
      181 agcccatttg attcaatttc cctctgcagt gttttactga aaatgacaaa aatgttcttt
      241 tacataaagc ctgcgagtct gtgaacgaac ataaatgtgc tgtgctgttt acatactaac
      301 ttaattgtaa tttaaatgcc cttttcattc cataaatata gccataggct tttcatttcc
      361 ttcaagcctt cagctcagag agcagtttat atgtaaactg gagtcagttg cttcataaag
      421 tgaatttctg gaggaaataa tatagtatat atcaaaatct agataggtaa tgcgaaattg
      481 attgtgacaa tacaatatta gaaacacatc tccataatat tttatttatt acactttcca
      541 ccttttgctg tcaagggaaa atatttcatc ttgcaccgcg aactccagtc tgtagagatt
      601 ttgacctcaa tattctcaca caaatgaata tagtgtgtaa ggtagcacaa ttttccctgt
//
LOCUS       KCLJ01000416             470 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 47153cal ultra-conserved element locus
            uce-6073, sequence.
ACCESSION   KCLJ01000416
VERSION     KCLJ01000416.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 470)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 470)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..470
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="47153cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>470
                     /note="ultra-conserved element locus uce-6073"
BASE COUNT          146 a           87 c           74 g          163 t
ORIGIN      
        1 atcctgtctc ctctgttgat aacatgtgtg tgcttatgcc atccacccca accaaagctg
       61 ctctacaatt cctgtttatt tgacttgctt tataaagtaa cgtgccaatt tgaaaatcat
      121 taggtattcc taccaggagt caaagaccac attcagagtg gattacatgc atgtttctta
      181 aaagtgttaa tgtgctaatc tgctggttac ttgatccagg caaaatgcca tgatattcca
      241 catgagcaaa ataccacggt tcttggagat ttcatataaa tattacccac tgtgtttcca
      301 catttgaagt gttatgcttg tctattaaaa tcaacaagct ggaactagta tctggaaata
      361 agtgatatta ctattttatt tatgaacttc agattctttt taataaaata ccttacaaat
      421 aaggaacaga acatgaatct tgctgttatt tcatgtattc tgtgtaaata
//
LOCUS       KCLJ01000417             667 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 47259cal ultra-conserved element locus
            uce-557, sequence.
ACCESSION   KCLJ01000417
VERSION     KCLJ01000417.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 667)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 667)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..667
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="47259cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>667
                     /note="ultra-conserved element locus uce-557"
BASE COUNT          221 a          105 c          116 g          225 t
ORIGIN      
        1 taagttttgc cattaatttc agcatttaca gaaaaataaa atgtgtttct gctaaatgca
       61 gtttcatgaa taataagcag agtttgatag agttttgttt aatttaataa aaacctctgc
      121 agaaactaac agcactagac atactgtttt aattggcatg attacatttt aattggcatg
      181 aaaaaaatta aagacaagga ttttaacttc taacaatggc aaaatagagg gatatggttt
      241 ttaatattac tttcatctaa ggtgaacact gtggaatgga aatacattag aatgaaatgt
      301 cagtggtgcg tacagtttaa tctgtgaaat tttgtcccct gtgctgaata ttactctgtc
      361 tcaattgcat attaaacaac cctatcaagg caggcattgg catctgctgt gctgacacaa
      421 attgtgaatt aaatgaaatt gatgtcctct gtcgtatatt tatgaagacg gaccattctc
      481 tgaagtattc tgtttatgaa gaatttatga ttgcaaactg ttccagaaca aaaaagtggc
      541 aataaattct tttttgtgac cctactctcc aagggcattg atttcacctc ctgctgctac
      601 ttttgttgca gcataaaaac aatagctagt gctagattcc actgagggtc ttcaaattat
      661 caatatt
//
LOCUS       KCLJ01000418             740 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 47477cal ultra-conserved element locus
            uce-5369, sequence.
ACCESSION   KCLJ01000418
VERSION     KCLJ01000418.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 740)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 740)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..740
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="47477cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>740
                     /note="ultra-conserved element locus uce-5369"
BASE COUNT          223 a          148 c          133 g          236 t
ORIGIN      
        1 aagatcaaaa cattacgcaa gttaaatttc cttgaaaggt tcccagcagg agttttcctt
       61 tttgtttgtg cagtacacga tttcctctca cccacaaaaa acataccaag aatgtgcatg
      121 tgccactaac actaagcagc acttccttaa tcactcattt ccaacaattt atggatgatc
      181 agtggcaaaa acgagcaaaa ataatgaaag catgcaatga aagctcattg agacaaaccg
      241 gcttggactt cctactcatt tctgtgtctc tttaagatgg gggtctgata caaattagcc
      301 actgggaaaa aagtcatctg gtcataaaat acagtacagg gtcactttta tgtaagtttg
      361 ccaaaaggga cataaaccag gacaatttca aactgtgaca caggatagaa gtatattaaa
      421 aaaatctttg ttcctcctct attgtgctgt catgttgctc agctttatag acattctgag
      481 caccagctct ggcctcttcg cttccacctg gcctacctaa ttaattaagc aaggaagtta
      541 cctcaaattt ttgtactatt tgtttttatt atcatgcact tcttttgatg ttccaggagt
      601 taacctctta atccacagac tctgtgtgtt gtgttctgaa cattttggga tgtctggata
      661 atttggataa ttggtcagga tgttgctgtc gctcatgtta aactttatgc tatgactacg
      721 atcagtatta aggtaatata
//
LOCUS       KCLJ01000419             753 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 47588cal ultra-conserved element locus
            uce-2089, sequence.
ACCESSION   KCLJ01000419
VERSION     KCLJ01000419.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 753)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 753)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..753
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="47588cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>753
                     /note="ultra-conserved element locus uce-2089"
BASE COUNT          229 a          141 c          128 g          255 t
ORIGIN      
        1 aggaaatggt caatagcaca ttatcctacc cacacataaa tgaatacctc tcaggttctt
       61 gacattggtg cttggcactg tctcactcaa gttcatagct aacaatagct aatgctatat
      121 tagtgataac taataagaat tagtcttgaa taacataaag caactttatg ctgtcagtgt
      181 catgcatctt tatcagggat atatcataca gacaatggaa attttccata tcctttaaag
      241 ttttgcattc tgtatatttg gttgttagac aaatagagca agctttgctg acttcatttt
      301 cattcttggc agcatgtttt tatcataagg cagatagtca ttaatttaca gaatcaacgc
      361 tgggaacagc ttttgtgatc tcatattaaa ttttcgcctg aatccgcccc ttggcaaaaa
      421 ttactcacat cgttaaaaaa tatttaatta ggctgtagtt tatacccagc tcactgggga
      481 aatgttggaa ttaatatgat ttgcatgaat tctgtttctc tttttctgtt agagattagt
      541 tttgaattca gttcagaggg tcgctgacac tgccaaggac tcacaattgt gaaggtcaaa
      601 caggtagcaa atacttcccc tgggtagctt ccctgaaaag acagctcaaa attgctttta
      661 attatgggtt acctaaaagg ccacttgctt tttatttttc tacaatctct caaatattat
      721 acagctgaaa cttctaggta gaccatcagt tca
//
LOCUS       KCLJ01000420             648 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 47699cal ultra-conserved element locus
            uce-394, sequence.
ACCESSION   KCLJ01000420
VERSION     KCLJ01000420.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 648)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 648)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..648
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="47699cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>648
                     /note="ultra-conserved element locus uce-394"
BASE COUNT          184 a          124 c          164 g          176 t
ORIGIN      
        1 gattccatgc aagtggggcc tgaaacacag ctgacccctg cgagcagagc ttccagtctg
       61 tgggagaagc ttctgggcca ggagatgctg ctgtctctcc ttggtttggg acaggagggg
      121 agtctggcaa agaagctgag aaatgaaatg aggcacgaag gctgcacgag agtcttttat
      181 caggtacatc ttcgtttttc aagtgcctat catatcacgc aaactgctct tgaagagccc
      241 tccatttacc ctctccccta attaaatgtg cacttcatta atgtaaattg ggggtttaat
      301 gctcttgttg aaattctgaa gaaagtgcta tggccttgcg aaatgcttaa gcatcattgc
      361 aaattagatt agggaccaag aaaggcagta aaattagaat gataatggtt gatgtggctt
      421 cctgacaggc gtgactattc agggatcaat gggatggaga acagtttccc ccagcctaaa
      481 gcgaaaggca gggacagacg tcagcctaca gatgtggctt ttggaagctc tttcaattag
      541 tttaatttgg taaatggtgg ggatttagag gctcttagcc agtcatacaa gacaagaata
      601 cattgaaatg tttttaacat aaaataggat tggccacatt tgcatttc
//
LOCUS       KCLJ01000421             659 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 47809cal ultra-conserved element locus
            uce-4128, sequence.
ACCESSION   KCLJ01000421
VERSION     KCLJ01000421.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 659)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 659)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..659
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="47809cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>659
                     /note="ultra-conserved element locus uce-4128"
BASE COUNT          213 a          132 c          127 g          187 t
ORIGIN      
        1 tgcttgaaac tgaagagaga tttatcccac aaaagtatgc agcacatcat tacccaaagt
       61 ggaacaaagg caggacatca gtattcaagt gttctgggaa ctttaacagg gaagggtcag
      121 ggattggatg tgatgtccaa gtgaaatgcc agttacagtt tgcacagtgc catcagacag
      181 acaatatagt tttgctgaga aactattaat ttaatattat ggaagcaaaa tattaagcta
      241 tcaggatcca ttatactcag agcctttgac cctggtttat cctggagttc aagccctgat
      301 aatctatgtg cttgaagctt cttggtggat aatggaaaat tctgctccat ttcctctggg
      361 acttcatgct cattagtcac agcataccaa ttaaaagctt tgttagaaaa ccagaggaat
      421 gtgacacagc acatgtacaa accaggaagc ttcattcaca tataacatgg atgaatggct
      481 ctgtatggga agccaagcac tgcattagca ggtcgtgtgc atcagcctgc aagatcaact
      541 ttttaagtca gcactctcac taagcaacga attttcattt ttttcacagc ccacaccttc
      601 tttctaaaaa atattttaaa tactttggca attatctagc aggaaatcac taaacttca
//
LOCUS       KCLJ01000422             518 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 47920cal ultra-conserved element locus
            uce-697, sequence.
ACCESSION   KCLJ01000422
VERSION     KCLJ01000422.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 518)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 518)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..518
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="47920cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>518
                     /note="ultra-conserved element locus uce-697"
BASE COUNT          158 a          102 c          122 g          136 t
ORIGIN      
        1 gcccggccct aaacccccaa aattatataa cacacatgtt tttatgcttt gccaattaca
       61 gctggaatag ggactgtttg tttcagcccc tctcaaaatg aggcgaggat gggaaaacaa
      121 cctattttcc ttattaggtt caggagtcaa aggactcagc caggagccgc aggcttcaag
      181 agcatagaag attaagacat atattggatt catgatggag ggcacaaagt tcattttcaa
      241 aataaaacag aattttattc atattccttt taaaattcag attgccattt gccagctgac
      301 ctgtgacatg gcagcagtgt attacatttt caatgagcag cctgtctgga gctggcagga
      361 gaggcctggt ggagcaccac ccttaaatag taagaatttg tcgggattgt tgtcagtaat
      421 gggagacggt gcaaacaggg acagggcagc atatttattt ttaataaggc aacatgcaga
      481 atagcaaagt ccctggcatt atgcaccgaa gagggctg
//
LOCUS       KCLJ01000423             646 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 48028cal ultra-conserved element locus
            uce-7817, sequence.
ACCESSION   KCLJ01000423
VERSION     KCLJ01000423.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 646)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 646)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..646
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="48028cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>646
                     /note="ultra-conserved element locus uce-7817"
BASE COUNT          224 a          116 c          109 g          197 t
ORIGIN      
        1 atgtcataaa ctaaattgta atcttctgct gtaatgcttg agaaattgat atgatgtggg
       61 atcatatctt ggctgagatt gcccattttc agaagtttta aaatcttctc tgaatttctg
      121 taaaacacaa tgagagaaca aactcagtgt gttaatttat aaatgaaaat ggatattcat
      181 actgggtaac acatttttca tttatgatat tggctttgaa gcccagcact gcaaacacca
      241 ccaaagttgc cagcacagaa gtgaaaaaat tgatgaagga caccagtaca gcatcaaaat
      301 ggcagttgtt gtctctcttg ttgtagcttg aaaaggcaat gactccacca aatccaagcc
      361 ctaaggcaaa gaacacctga gtagcagctt ctctccagac cttgggctcc agcatttttg
      421 caagctgttt gaaattagat ataatatatg tcagctataa aatgcatttc tattataaaa
      481 atgctaataa tattttcatt atgataaaat gaaagctgaa tgcaaccccg caaatttatg
      541 gcccagaatt tctacttatt ttgtatcatc taaacattga ggatatacgt atattccaaa
      601 caacgagaca ctactggagc tatctaactg aaataagtta tactga
//
LOCUS       KCLJ01000424             392 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 48131cal ultra-conserved element locus
            uce-2902, sequence.
ACCESSION   KCLJ01000424
VERSION     KCLJ01000424.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 392)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 392)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..392
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="48131cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>392
                     /note="ultra-conserved element locus uce-2902"
BASE COUNT          133 a           79 c           75 g          105 t
ORIGIN      
        1 atgggaaggg atacagggtt tgattttaat ccctgctaac acagaggaaa gaatgcttgt
       61 gtcacaactc agtgagtgta aaaattaaaa aaggctgaga ctattgtttg aaaacaggca
      121 aaataattaa aattattatg gaataatcac atatcacaca acaacctccc actcttctga
      181 gcaacaatcc aaaacagctc ctccaaagca ggcccagggg cagaggttct gtatatcatt
      241 caaagaccat ctgtcattca attcctgtag cccctttcca ctattctaag ggcaggctga
      301 aatttagtcc tggcatttct ttttccattt gctaacaaac agcagtgatg gcagataaat
      361 atggcaaaca ataggtgttt gtaatgaact gg
//
LOCUS       KCLJ01000425             620 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 48234cal ultra-conserved element locus
            uce-7452, sequence.
ACCESSION   KCLJ01000425
VERSION     KCLJ01000425.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 620)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 620)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..620
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="48234cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>620
                     /note="ultra-conserved element locus uce-7452"
BASE COUNT          186 a          122 c          115 g          197 t
ORIGIN      
        1 ctttttatct atcctaagca gcagaagtta atttgaggat ttttacagta ttttttccca
       61 tttacaaaca ggaatgccgt ggggtaaagc aattactctg atttactgtt ttcactttga
      121 ttgaacataa agatgtagca gggtctcaaa aaagcagtaa cttaacaaac tgtgctccta
      181 tccacagaca gataaagtac ctattttgct atttcaaaga gtttacctcc aggcagcagc
      241 acagagcgaa catcaatcaa tgacatgtgt ctaagatgag attgatgttt actctcacag
      301 cttttcatct tacatccaat aaattatttt tccttcacca aagtgcctgg ttaaatttca
      361 tttttcactt tgcagtatca gttttaaaac tttagcttcc agcaatttta aagctaggct
      421 tcattgacgc ttcagctttt acagcctgtt tatgatttgt attagccatg aaacactaca
      481 gaccaaacat gaatatgatc aggggaagct gagccggggc agcctctcac ggtggcaggt
      541 gcaggctgga aggtgtgaga ttctttaatt atctgcctgc aaattccaag tccaaaacag
      601 ggttttcagg gatagatata
//
LOCUS       KCLJ01000426             655 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 48346cal ultra-conserved element locus
            uce-1828, sequence.
ACCESSION   KCLJ01000426
VERSION     KCLJ01000426.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 655)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 655)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..655
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="48346cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>655
                     /note="ultra-conserved element locus uce-1828"
BASE COUNT          158 a          175 c          127 g          195 t
ORIGIN      
        1 agcagcctgg agtctgagga tggcatcact ccttgcagct cagtcctcct gaattcctgc
       61 cctctgcaga aattctcctt cccccgcttc cccccagcac cactcggcta atttctcgag
      121 tgggatacac taatcccata tttctctgat agttactttc tccaaagctg tcttggaaac
      181 ccaggtgcca gtccccgacc agggaaaaga gatggcgaac ggctttctct tgattgtgtc
      241 gatgggagat gattttcaag gtgaaatttc tagttcagtt gagtcacttt cattcaaggc
      301 gatgagcaaa atgtcacccc cacactgaac cacactcaat gcgctgttct cctattgcat
      361 ttaaatttac tccacttttc ctttctgaca cctgtttaaa tcaatatctt cctctccagg
      421 tcgtgggcag aatgtgcctg gtctctccgc acagcgcttc tcaaatccac taaaatcaac
      481 acaataattg aaatattttc aagctgatta caccgctgcc tgaggctagg ctggttgcta
      541 agggtaagct ccctggttgc tagggggagt aaatcatctt gcattatttg atttttgtta
      601 tagatatgaa accgctactc cctcgattaa atgtctctca gtctaacacc tatgg
//
LOCUS       KCLJ01000427             527 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 48457cal ultra-conserved element locus
            uce-398, sequence.
ACCESSION   KCLJ01000427
VERSION     KCLJ01000427.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 527)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 527)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..527
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="48457cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>527
                     /note="ultra-conserved element locus uce-398"
BASE COUNT          153 a          108 c          122 g          144 t
ORIGIN      
        1 cttctcaaac tcactgggct tgccagggtg taacaggaag aatttggccc atcacacagc
       61 ctggccaagc tgctgctttc attaattttt ctgctgtttg gctttaatag tgtgaaaatc
      121 ccatcttgtc aattggaaca cctgcctgcc ccacagaaag ggtatttgaa gagaagtttg
      181 tacgccacgc tcaaacacag ccctgcatga gtttttagcg tgtcagtcag tgagttagag
      241 ggaaagggta aggagaagct aatcaggatg aaatgagatt aaaggctgtc taattttaca
      301 gcaactgtga tccatcagcc actgtgaaag tgacagtgga aatgaatgat ggagacagac
      361 aggtggggct gtacatttca ctgatttatc ctcaaatgca ctgggcctta ttttattgag
      421 tgaacatgac cgcatttatc atgactgtca tctaaaccca cttccctcca tttaaaaagg
      481 tcactttact aggagggagt aggatagagg cactttcaaa acagatt
//
LOCUS       KCLJ01000428             741 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 48564cal ultra-conserved element locus
            uce-2682, sequence.
ACCESSION   KCLJ01000428
VERSION     KCLJ01000428.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 741)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 741)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..741
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="48564cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>741
                     /note="ultra-conserved element locus uce-2682"
BASE COUNT          222 a          153 c          138 g          228 t
ORIGIN      
        1 tctgtgacag catttgtctc ttagttacag caagggcaat gttatcagca ccaagcaacc
       61 cagaagaaaa ttatcaattg gttaccaaga aacctaatga tttcatcaat attattttac
      121 cagttacaaa ggtcatttgg agaagtaatg ccacacaaaa tgtgcttgtg aagtgggtga
      181 tgtgtgggtg gctgttaagg gtcaacactt catttctcat ttctttaatt gatacttctg
      241 aatgagtatt aattgagctg caatgagaag agtgtgcagt ttgacaatgc aagtgacagg
      301 atggaagtgc cattttcaga gtgtatataa ccacagctaa caccctcaaa gcgttaattc
      361 cattttatgt ctttcacatt taatagcaaa tttgccattt aatctttaag acagaagtta
      421 cttattctca atctacctct cacttgcact gatataatct catgccactc agactggcct
      481 gtggcatgaa gcacatcaca ctttcaaatc aggtccattt tttcattagc tcatatcctt
      541 cctgagatgc cctcctttac agatggctga tcagcaatca acactagttt gtttcaatca
      601 gaaaagcagc cgtaacttct catttaaaga ctgttcctgg agaagcgcat tagtcgaagg
      661 cataaagctg gcaccggggc aacagtgact ctcacaactg atttcttttt tttaaagaga
      721 tagacctcat ctggagacct g
//
LOCUS       KCLJ01000429             443 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 48674cal ultra-conserved element locus
            uce-5899, sequence.
ACCESSION   KCLJ01000429
VERSION     KCLJ01000429.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 443)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 443)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..443
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="48674cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>443
                     /note="ultra-conserved element locus uce-5899"
BASE COUNT          134 a           77 c           91 g          141 t
ORIGIN      
        1 ctttttgaga agctgttgta agatttgtat ccccactgag gaccgagatg tcatagggat
       61 agagaaaatg ccgctcactt tatggattac tgttaggtca acaaaacttt ggcagcattg
      121 attaacttga cagtgagtac agcagtacat ttatcactta tggctgtgct gtagaaaatc
      181 taataagagg caaacaattc cctttagagc agtaacaggt tcactgtggc taacggtgca
      241 tgcactggaa atttctgact ttaaattata cccttgctgc tagttgggtc attgactcca
      301 agctactgca ctttcactac tatgttctgt attattaatt tgatcaaagt tgttttggct
      361 tctataaatg tgtgcaagcc atatattgaa gttcatataa actcataagc atttttgaag
      421 aagagaagga ggaacatgat cca
//
LOCUS       KCLJ01000430             458 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 48783cal ultra-conserved element locus
            uce-2537, sequence.
ACCESSION   KCLJ01000430
VERSION     KCLJ01000430.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 458)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 458)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..458
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="48783cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>458
                     /note="ultra-conserved element locus uce-2537"
BASE COUNT          150 a          104 c           84 g          120 t
ORIGIN      
        1 aaaagaaaac aaaatcacag ctggaccctg tcctacacga ggtgttagaa aacaggagcc
       61 atgacaacac attcatttcc actaagggtg tgtgaagcag atactgcccc ttctgtagct
      121 ctcgataaac ctagtcactg acaaacactt gtggaaaaac atatgcacca gtctcctgca
      181 taataccagc tgcaactata acaacaaggt tataaaccta aaataagatg ataacatgta
      241 aatactgggt tatttagtct acagtacagt aatctggata aaaatgacaa gggatagcct
      301 aatttccttt ccccaaacaa cttttacttt cctacgttgg atcgaccttc aatgcaaatc
      361 ttaacctcct gaggaataaa agaaggcttg ggaagagtca aaggtggctc ctcttctgat
      421 ttctctagtt ttcgtgtttc gggggctgac cacctcct
//
LOCUS       KCLJ01000431             407 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 48886cal ultra-conserved element locus
            uce-153, sequence.
ACCESSION   KCLJ01000431
VERSION     KCLJ01000431.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 407)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 407)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..407
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="48886cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>407
                     /note="ultra-conserved element locus uce-153"
BASE COUNT          127 a           62 c           69 g          149 t
ORIGIN      
        1 ttatagaact gttttaatac ctcactaact attgctttct ccctcaaggt tttcattgtt
       61 ctcataccct agaaacaaat tgataattct gaaaaaaata aagtatttct tagttgtttg
      121 ctaacagcag aatagcaatc agtcaccaca gggttactac aatgggcatc attatatctg
      181 gatccttatc aatttcacta tatgggtaag tattattgct gcataccgga actcctttgg
      241 tgttattgct taattttaat tgtgattgta aaatgtgaaa aatgtggata tttaaaccac
      301 aattaaacac ctgctatact tgttgtgcat tggcatttaa agatatattg agtatttaaa
      361 atctgctgaa tcagatatta tattgagggg gatctgggat tggtttg
//
LOCUS       KCLJ01000432             521 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 48993cal ultra-conserved element locus
            uce-3966, sequence.
ACCESSION   KCLJ01000432
VERSION     KCLJ01000432.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 521)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 521)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..521
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="48993cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>521
                     /note="ultra-conserved element locus uce-3966"
BASE COUNT          160 a          115 c           93 g          153 t
ORIGIN      
        1 tacagatata gaagatgatg tgcactttat tacccttcta aatgccctcc cagaagcttt
       61 tcccaatact gttgaacatt aaagactttt gtttgaatgt gtggaatttg ctttgtattg
      121 ccttggaaag gaatacatct ttcactacca caaccttctg taaccctcct gccctcttca
      181 ctcccacacc cccacacaaa gacactcctt aattgtatta ctgttaggct gacctccaac
      241 ccctactaaa atgaggacaa ggctagtttt gtgtttcatg ggataacaat ttatgagcaa
      301 ttaaaaatga agagacacaa agcattcatc acagtctcag ctagacaggc agctgaggtc
      361 aaaggttcta gcaatgaagt gtgcacaata tatttttatt tctgttttca ctaagaagga
      421 aacgggttag ctaaaaatta tggcatgcag cctccagttc aaaataggtg cacttaatct
      481 ttcaagacag tccatgcttg ggcagatagg ttatgacagc a
//
LOCUS       KCLJ01000433             681 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 49100cal ultra-conserved element locus
            uce-910, sequence.
ACCESSION   KCLJ01000433
VERSION     KCLJ01000433.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 681)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 681)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..681
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="49100cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>681
                     /note="ultra-conserved element locus uce-910"
BASE COUNT          138 a          145 c          143 g          255 t
ORIGIN      
        1 ttttcctcag tttcatgtgg ttctaaaatg gctgtgtatg aatgtaattg gtgcaaaatc
       61 taaatcattt gataagctaa tggctctctg agcatcctca aatgaatggg gactttccct
      121 ttgcttgagg aagccccaga ctgcagtgat ttttctgaac tgtatggcct cctctgcatg
      181 ctcactgtgc tgcttttcac ttttaacaaa ctaacatgtt ttctctgctt ctctttccca
      241 ttccttattt acacgtgtgt ttttattaac ggattctctt gcccctgtct gttggttttt
      301 agctcttcat ggttcgcact atgacagagt ccttaaactc tgccgagctg ttgaagcagc
      361 tcaagtctct gggattggaa aagctattgc atgtgacaca caagtttctg aggcagtcct
      421 acatctatcc gcctctttta aactttggtg gtaagacatt acttttactt tttgtggtga
      481 tgtgaactgt tgcaagtggt ctgctgctga gtgtcagttc tccttggcac gggtaggcat
      541 ttgtgctggt gtgtaggttg catctgttcc tcttgccttt tatccacaca gtgccagttt
      601 tcagtttgaa gtggagcagt cgcttactga tagtaattct cagtgttgct caactaatgt
      661 accatgtgta ttttcctttt t
//
LOCUS       KCLJ01000434             650 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 49213cal ultra-conserved element locus
            uce-472, sequence.
ACCESSION   KCLJ01000434
VERSION     KCLJ01000434.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 650)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 650)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..650
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="49213cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>650
                     /note="ultra-conserved element locus uce-472"
BASE COUNT          198 a          116 c          127 g          209 t
ORIGIN      
        1 agatttagat tcagattgaa agagagaatt gagaactaca ttgttatatt tcagaaagca
       61 tggaaaagtg ctggcacatt tttccctatt ctgtgccttc tcacttcccc aacctttctg
      121 atgtctttcc agtttggagc tcctgcttag ataaaacaga tgactttctg ggcctgcttc
      181 tgctaacagc aggcaggagc aacggtgact gattggttga aacatgagga ttaatgggta
      241 tttatatttc attaaatttt atgctcactg gagaataatg tatcactcgc agatattgaa
      301 acatatgtca accctatcca cttacatata attcaatttg acttaaatgc attgatcaaa
      361 ttttattaaa gtccaatata tcttccaaaa aggcctgcta acacaatatt gctgcttcac
      421 attcatcaga taaaaagagg caattgtgtt gtaattccat ttataccatt tttcgggaaa
      481 agggagatta ttgtgaagca aatactcatt acaaggtgac tggtgttggc tgaaggactt
      541 gagactgaga ttattaagtg aattctcaag tggtgccctt tagttaaaat taccccaggg
      601 tgggtcatgc ctgttttcat ccccagtgga aaagagagat cagcattgtt
//
LOCUS       KCLJ01000435             714 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 49324cal ultra-conserved element locus
            uce-6944, sequence.
ACCESSION   KCLJ01000435
VERSION     KCLJ01000435.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 714)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 714)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..714
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="49324cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>714
                     /note="ultra-conserved element locus uce-6944"
BASE COUNT          192 a          125 c          154 g          243 t
ORIGIN      
        1 aatatgtcag aggagctgtt gcagtaaaat gtaagcacat catcttggag ggggtacagc
       61 gtggtgggcg tattgttggc tcaggaggga gagaaagatg tataatttaa tggtatatac
      121 aatccactga tcctattact atcctccctg gagctcttgt tagtttcaat gggagtgagt
      181 gaaattgaca tggacttgca ttcctggtca tgtgcccccc tttctttctt ctcttgtgat
      241 ctgagatccc ctttttgttg atgttgcttt cccacttaat tatatgcatg taggttaaat
      301 gaatacctga cgaaagggcc cacgtttcaa ggcagtgaca tttgatagct gagaggaaaa
      361 gtggctttaa tgaaaagcaa cctttggaat tcctgcttgt gaaaaatcca attcagcttt
      421 ttgtgctgcc agcaagaaat gatcagtagc accagtgttt atggtatgtc cgttttggga
      481 tctacttcct ttgcatctaa atagcaaaga caaatttaaa tagcatgata acgcaccgag
      541 gactctgcat gcaaatattt tgtaataaat acctaatgtt tagtagtata tttttatata
      601 agcatctctt gctatcattt gtttattgtt tgtgcttcga ttatggcatt agttttgtcc
      661 attgtattga tctcagttgt aaaacctgaa gttgcatgtt accagcagtg cact
//
LOCUS       KCLJ01000436             720 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 49438cal ultra-conserved element locus
            uce-5344, sequence.
ACCESSION   KCLJ01000436
VERSION     KCLJ01000436.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 720)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 720)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..720
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="49438cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>720
                     /note="ultra-conserved element locus uce-5344"
BASE COUNT          265 a          116 c          130 g          209 t
ORIGIN      
        1 tttcaaaacc aatcacttat ttatgtagta tagaatatca acacagagaa atagggaaat
       61 aatgaacaac cctgcagagg tgactttagg agagaataga ctgagacgtt aaaaataaac
      121 aaaccaagtc actggagagt gatgcttaat acttgaaggg caacatcaca cacctggaat
      181 gtctcaaact gctgagaaaa gaaagactag ttagtggcca agaacaccct gatgttctgt
      241 gctacaaatt gaaagtgaag gttactttat tgtagacttt atcttaaagc agtaaaacgg
      301 gtagctgcag ctacaactga aagtattgat tttgtaattt cagcaaatta agaacaagac
      361 aggaaaccta ttaaaccttt ccactgattg ccagggcact ttttggtgat gctggtgctg
      421 acattaaaat tacatgcgcc tgtctcttta aagccaaata tatacatttt acagaagata
      481 gtgccagcta acatgctgaa aagggatctt tataaatctg tgtaatttca catttcagat
      541 gtaaaacttt tgaagcctga tgacatgaat gtcaagcagc acatctaaaa ttttcataaa
      601 ttatggttca tgttagatgt gctttcatta cattttaata aattaaaatt ttcacaaagc
      661 cagaataata atagcaaaga ttgtaatgct agtaatagca ttatctgtca gaacattatg
//
LOCUS       KCLJ01000437             457 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 49549cal ultra-conserved element locus
            uce-2719, sequence.
ACCESSION   KCLJ01000437
VERSION     KCLJ01000437.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 457)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 457)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..457
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="49549cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>457
                     /note="ultra-conserved element locus uce-2719"
BASE COUNT          166 a           80 c           78 g          133 t
ORIGIN      
        1 ttggccacct ttataaatac acttaataac agatcagatg gtttgtctag ctagcttgtt
       61 gcctggaatg gttaggggac tgacacagcc ttttccttga tgaacaaacc agtgctgtat
      121 ttcaaacaag gcttttacac tgagctaccc cagcacggta atttaatgaa tctacatttc
      181 atgactgaag tgataaggat gaaacatttt aaaataacca aaaggtagat acaccaaaaa
      241 agtctgatga aacattaaat gaatgtagtg taacacatta tctttgcttc tgcacatcca
      301 aaaagtgcaa tgaactaaaa cattgcatta agccaagaat aaagctaaaa attaaattgg
      361 cttagaaaga tctagtgtag tggtttatgc actaagaacg ctgtaaattt ggtcatttaa
      421 taacattctc tttaccactg aaatgcacat taaaagc
//
LOCUS       KCLJ01000438             768 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 49658cal ultra-conserved element locus
            uce-1010, sequence.
ACCESSION   KCLJ01000438
VERSION     KCLJ01000438.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 768)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 768)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..768
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="49658cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>768
                     /note="ultra-conserved element locus uce-1010"
BASE COUNT          236 a          138 c          153 g          241 t
ORIGIN      
        1 aagaaccaag tgcaacatca gattaaaggt cttaaaggac agtagctgga gacaatctat
       61 atctgtctct gaaaagaggc taggcattgg gctttgatct gccctcctcc ttgtatataa
      121 atgtaatctt ggatcttgat tgaatattcc cactctgatt ttgtaattaa aacatcattt
      181 atactgagaa taattaagac aactgtacat ttgattttaa aatcagtttt gagtattgtg
      241 ccttgtcaag ctacaagact ggttcctgca gctttacaac ttagcattga gaggcagaca
      301 gtgaccgcag gcacctgagt ggaaggtttg acagtttgat aaattaggaa tgacacttgc
      361 caaaatggct gtccttccct cagcctgcca gtggagcatt tacacactgt taattgaatt
      421 ggcaatttgt gtaacagtac ctgcccctga gcttttgtaa tgctggagct gccatttagc
      481 tctgataatc caggacttgg gaataaggac gaaaagcttc acatgatatt attgcagatt
      541 taaaatgaca gttggggacc ttgttgccaa tttcccatta aatgagaaat aattaacaat
      601 agcaataaca aagtcttata aagctggaaa gttaaattga cttttcagca gtagtatggt
      661 ttgaaattgc ttctagtgtg attatcagat tgccctttca gtattatata ccctaaatag
      721 tatcatctca tggtctgaat aggcaatagt gtcaaagcta ccctgttt
//
LOCUS       KCLJ01000439             333 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 49768cal ultra-conserved element locus
            uce-299, sequence.
ACCESSION   KCLJ01000439
VERSION     KCLJ01000439.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 333)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 333)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..333
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="49768cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>333
                     /note="ultra-conserved element locus uce-299"
BASE COUNT          104 a           47 c           54 g          128 t
ORIGIN      
        1 atttattttg cattttaaag aatacttatg agaattgtga taaattagca gtgacaaact
       61 acttcttgca ggctgatttt gtgtggagag tttaattaaa cattgcagct gtttatctct
      121 atggtgatta aattttcata tgtaaattac atgtattaag atcaagatac ttatgtaaat
      181 gtcacttgcc ttaatgtttt gtgttactgt tattaacatc tcaccatcag cttgtaatct
      241 tcttgtattg cattacgctg ccgtgcacga catgactaaa ataagtagat ttatatctta
      301 ataacaagaa catctcgcta tgtaattgag atg
//
LOCUS       KCLJ01000440             336 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 49868cal ultra-conserved element locus
            uce-7035, sequence.
ACCESSION   KCLJ01000440
VERSION     KCLJ01000440.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 336)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 336)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..336
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="49868cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>336
                     /note="ultra-conserved element locus uce-7035"
BASE COUNT          121 a           60 c           47 g          108 t
ORIGIN      
        1 taagatcaat ggtttttgtt accaaattag agcaaacttc tgagcagttg ttaacacaag
       61 tccacattta ctgaaagaac tgggcacctt cacgtgcatc gcaatagctg ggagttacac
      121 aatatctata tcatttttca cagctttgtc attagctggt aatgatttga ttattttgca
      181 gatgaatcac agtataaatc tctttcacaa acactacctc caagtattaa tcaaaaccat
      241 taaggcaaag cagtcagtgc aaattaaaaa atttgcatgt ctaaattaaa aattacagta
      301 atacatcata aataaatctt ttaaattctc tatggt
//
LOCUS       KCLJ01000441             728 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 49969cal ultra-conserved element locus
            uce-4981, sequence.
ACCESSION   KCLJ01000441
VERSION     KCLJ01000441.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 728)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 728)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..728
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="49969cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>728
                     /note="ultra-conserved element locus uce-4981"
BASE COUNT          242 a          126 c          167 g          193 t
ORIGIN      
        1 aataatattt caggtttaaa tagcaattag catattaaat atcagtgtac aaggggagtg
       61 tacaaagcga ttccatagta aattagtctg aaaattgtcc taattgttat gccagatgac
      121 gtcctctacg ttttgtcttg ggagaaaaag atctttctgt ctaaatgcca ttatgtgtca
      181 tcctagctga gcctcctgcc tagcggggac attgaagttt tacagcagga gccgcttctc
      241 aggctttaag aactacagta aatcttcaaa caatttatcc aaacaaagcc cagtgtgtgg
      301 agagaaaaat acacgggaag cagatgaata agcaacatca attatggggg ggttgacctt
      361 tctgccccac accatggcac agatttcaca ccaaatcgca gcagattgaa gttgacatgc
      421 ctggagtgaa aacactggtc ctcacaatgt tgcaactcta cattcacaga gctgcagtaa
      481 ggagaggagg aagaaaatga agagaagggg agggggaaaa atcacatata atgggcctgg
      541 gtttatttta cagagaacaa aatggctcaa tttgagcact tagactgtca aaattggcta
      601 gtgtgagata cgagaggttc atccaaactt gaatcaggtg tcttcagtga tagaacctag
      661 aagaagggat tgggagaata aaggctgttc ttaaaaactt cttaatgttg ttagagatca
      721 tattattt
//
LOCUS       KCLJ01000442             604 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 50077cal ultra-conserved element locus
            uce-5363, sequence.
ACCESSION   KCLJ01000442
VERSION     KCLJ01000442.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 604)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 604)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..604
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="50077cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>604
                     /note="ultra-conserved element locus uce-5363"
BASE COUNT          166 a          110 c          160 g          168 t
ORIGIN      
        1 tgatttccaa aacaaaatgg gagagagcca tactgtgctc catatacaca aaacaaggat
       61 aaattgaaat gggcaggatg gaattgctgc tgggcctggg gaaagtctgg ctttggaaga
      121 gtgactaagg ttgccttggc agtgctctga tgatgcaaag taactgcaca gcacccagaa
      181 ggatgaaatt acaatccatg tgataaaatg aggccatgtc ttgtgtttgt cattgcagta
      241 tttcactggc ctagagtgtg gacacaaatt ctgtatgcag tgctggagtg aatatttaac
      301 taccaaaata atggaggaag gcatgggaca ggtaaaatct caactcatgg cttatttctg
      361 gaaatcctgt gagagtctct ctgctaaagt ttggggctgc tggcaggtga atctggagag
      421 aattcagttc tgggctgggg gagaggcaca ctcctttggc tgtggattgt agtgaagtct
      481 gttgccttgg aattccttgt gatgcaaaag caggataacc actgttcctc ctcttttttc
      541 agaccatttc atgccctgcc catggctgtg atatcttagt ggacgacaat acagttatgt
      601 aagt
//
LOCUS       KCLJ01000443             691 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 50177cal ultra-conserved element locus
            uce-7666, sequence.
ACCESSION   KCLJ01000443
VERSION     KCLJ01000443.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 691)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 691)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..691
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="50177cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>691
                     /note="ultra-conserved element locus uce-7666"
BASE COUNT          225 a          118 c          125 g          223 t
ORIGIN      
        1 ttcttttcat cttttgtgcc ctttccaaat tctgcctctt cttgccatta aaataatgaa
       61 agtaccaaaa cgactatgct cataattaaa agtcattttt aaataacctc agaagattgt
      121 ttctagaaat caaaacatct ttatggtccc atttttaagg aaagaaagac aagtgactgg
      181 gatcctgtac actttactgt agtctacatt aattaccttc tattaaaaaa tgacaaagac
      241 ctttttgaaa gggaatctgg cactctttcc acagaaatga tggcagacac cctactctgc
      301 tgatttcttg acacttctaa ttacctgtat tcatttgaaa tcgtttcctt tgtagtgagt
      361 tattggcatg attttcagag aacaagagga aaatggaaaa cattttagca agttaagaaa
      421 aaaaaatcaa cagtatcatt gtttgcagct tttgttgaaa ctagctacgt gagtcatttg
      481 agggacatga aggtaaatga aaggttatac tttgccctgc acgttgtcgc tggtatttgt
      541 aatgtcaata actgtagaag gttgtcagga aactggagag ataaaggtca atagcaatga
      601 caaatatatc attgtatgtg tttgaatatg caatatcagc ctaatctcac ggtggaggtt
      661 ttcacaccct ggaaatatca atcaggtgct g
//
LOCUS       KCLJ01000444             636 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 50288cal ultra-conserved element locus
            uce-6725, sequence.
ACCESSION   KCLJ01000444
VERSION     KCLJ01000444.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 636)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 636)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..636
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="50288cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>636
                     /note="ultra-conserved element locus uce-6725"
BASE COUNT          221 a          120 c          112 g          183 t
ORIGIN      
        1 tatgtaacta gacatctcaa tttaacaacc agacatacat ttaacagcat taatagctag
       61 gcacttaatg gatcaattcc cactgtttgt gtaatgtgaa aataaaaggc ttattaaatg
      121 acaagctttc cctggtttgt gctaattaat tatatactgc atctgactgc taatttagtg
      181 ggaaaatgca gcccaaaact atggtttctg cttgaacttt gcctcagcac cacctaattc
      241 tgctcagagt gcagctgcga cctgcctctg aacgacggca gtattaaatt agagcacaag
      301 gccatcaatt taataagtac tgtagcaggt aatttgaata aggacagtat tagtattctg
      361 ccagtgcaca actaaaagca gctgaccttt cagaccagag aagaacacat ctagctgaat
      421 cggtgaacac agtaataatc tgaccatgtt aagagtgcca agagagactt ttacagctct
      481 gcacccatta ctatatatca gctattctac agtatataag aacactttat gtacagaaaa
      541 acaaggttat aaatagaaca aaggcaatgt gagagatata tttcaagtgg cacatttgaa
      601 aattttcctt attaccttga tttatggtat aaagaa
//
LOCUS       KCLJ01000445             647 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 50398cal ultra-conserved element locus
            uce-6888, sequence.
ACCESSION   KCLJ01000445
VERSION     KCLJ01000445.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 647)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 647)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..647
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="50398cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>647
                     /note="ultra-conserved element locus uce-6888"
BASE COUNT          208 a          122 c          115 g          202 t
ORIGIN      
        1 ggagttccca ccaatcctct tgggctaacc taaataattt tatgtctgtg tcataatagc
       61 cataaaataa ttctgtgtca aaacaatttt gtaaattggt gtttcaacat ttgtcctgag
      121 tgcagctgaa caaaaccctt tgtgtatagc tccagtcttt gcgcctcaag gactccccta
      181 ttatacacct gctcttgaca gattgaggcc taaaacagga gagcttagtc acatattaac
      241 cagcaggaag aaagtctctc ctttttatta atgcctgcct acgagttcag tgtttggaat
      301 gcagtcctac ctataaatca acatcagaga ctacaaccca gtgtgttcaa gagctttgtt
      361 taaacatcaa aagaagaaca cagacaagcg ctatggtaga aatataacta atcacttgca
      421 aatacatctt tcctgtcagt aggagcttaa cctttttgtt taatgttact gcaggaaaat
      481 gcacttattt acattttctt taaagcaata gacaggttta aaaatgatca tttttattac
      541 tgctggattt aagaagtgct cagttacagg agatttatgg aatcttggga atttcaaggc
      601 tttaaaatga ttaacaagaa caggaattac tgagattgct gaacatg
//
LOCUS       KCLJ01000446             597 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 50507cal ultra-conserved element locus
            uce-4695, sequence.
ACCESSION   KCLJ01000446
VERSION     KCLJ01000446.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 597)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 597)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..597
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="50507cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>597
                     /note="ultra-conserved element locus uce-4695"
BASE COUNT          186 a          124 c          124 g          163 t
ORIGIN      
        1 ttttgtgtta ttagcatcca agagtgctgg gggtgagtaa aaggtgcaag agcagcaggg
       61 gactgttgcc ataaacagga tttcacagag tcatgcgtct ttcagagaca tctccataca
      121 ttacttctaa agttagcatt atttctccat tcgaaataat cagaaataaa acatcagaca
      181 gtaaacactc ccccagtgac tagctgtgtt gtttgggcca ctcctcaacc ctccactact
      241 ttgcaaaaga cactaaaagt tccttctgtg agttgccaag gtgctcccag cccattgtgc
      301 agaatcattg tcaggttaaa ttagggagta cagactccat gagtgtaaaa aaatcaatac
      361 ttgatggaag attgctcccc ggaaaatctg ttttgattcc aggattaatt cgcgaccaaa
      421 ggcttctgca aaatgacatg ccattagtca gaaaatgaac acattctacc cttgaaattg
      481 gatggaaata tgtcaggtga ttgacctatt cattctcttc gctctctggg cacagagagt
      541 aggtgtggta gctgtgaatt aggaaaccag gtccattttc aagcactaaa aaaaaaa
//
LOCUS       KCLJ01000447             497 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 50616cal ultra-conserved element locus
            uce-5429, sequence.
ACCESSION   KCLJ01000447
VERSION     KCLJ01000447.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 497)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 497)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..497
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="50616cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>497
                     /note="ultra-conserved element locus uce-5429"
BASE COUNT          139 a          114 c           74 g          170 t
ORIGIN      
        1 ttttctaaat aaagcacact gtctccattc agcccatgga gaaagggtgc ctactcaatc
       61 ctcttaccat tgacaatata ataaaaccag aggaactttt ttgaagtaga tctgcacatt
      121 ccacatttgg attgaggggc aatggactgt ttaaattgct atttacattt ccagctgttt
      181 taccagtgat ttgcccaact taatagctct ttaagctttt aaacaagaaa atagctattc
      241 tcacgactca aagaagaaac catggttatt tcagtctgcc tctattgtaa aaggcttaga
      301 cccctctctc tttatagatg cccttccctt tatagtactt cccttttcga tctcctcctt
      361 ctttctaaac cttcttccat ttttagctca ctttttacat tttctagcac cataatgtat
      421 ctttcctgat actgctgatt caaggaaagt atttgcaagt agtcacgaag gttcccaaga
      481 gaggcttaag ttagcca
//
LOCUS       KCLJ01000448             545 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 50724cal ultra-conserved element locus
            uce-1977, sequence.
ACCESSION   KCLJ01000448
VERSION     KCLJ01000448.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 545)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 545)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..545
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="50724cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>545
                     /note="ultra-conserved element locus uce-1977"
BASE COUNT          184 a           97 c           87 g          177 t
ORIGIN      
        1 aattttaaca taattttaag tgccgtaaag ggctttatat ctttgaaaag cacttattaa
       61 aaattacatc ttaaataccc tacactagaa agtaagttag cctataagcc tgataggggt
      121 cagggtaata acacagaatg aacaaattac actgtcattc cacttaaatt atttaagtta
      181 tttaatttga cctgtagata gtctcttgtc ttctcatcat gcctgacttt taagtgggag
      241 gtcttcattc atgatgatcc tttaatggaa gcaaagcttt ctccatttaa cccatggtgt
      301 tatcaatcat gtacagggat aaatgaggct gtaagatttt gccagtatca caaatgacac
      361 tgtgacctga ggccaacatc tttatttgct tctccagtga ttcacttcag cagatattaa
      421 ccaattttat aatccatgaa aggcaaaatt aaaggacacc atccataaaa cagaataatt
      481 cctatcagca acaaagtgat gtctgtatta tcttataaat tatatggcca tacagtgtgg
      541 taatg
//
LOCUS       KCLJ01000449             750 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 50831cal ultra-conserved element locus
            uce-5146, sequence.
ACCESSION   KCLJ01000449
VERSION     KCLJ01000449.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 750)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 750)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..750
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="50831cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>750
                     /note="ultra-conserved element locus uce-5146"
BASE COUNT          223 a          147 c          156 g          224 t
ORIGIN      
        1 tcatattaat taaccatatt gacatattag tcatgtcctg tagccacggg gaaaagttcc
       61 aatacccagg ctggggaatg aggaaaaagc tgcaggatgg ggcaagagtg ggaaggagag
      121 tttgggaagg acgtgaggtg ttagcctgat ccctggctct ttgtgccagc catctaaact
      181 tcctgaaatt atctcaagca ttgagatcca taaaatgagt gtggtaatga aagtgacagt
      241 gctcttctgt tttcctattg aaatgttccc tggcctagtt caacagaaac atttttacat
      301 tacaactgtg aaatcttagc ataaagcttc cctttgtgcc cttcattatt ttctcacaaa
      361 tatagtccat tgtcacatag ctgaagttaa tttgatcaac attgggacat ttaactttta
      421 tgtccggtca aaggagctgt ttcatgctga ttttgagtat tgaaaagaaa tgattgccag
      481 aaaaataatg ttactattaa caattcagag caattagttt cccagggaga ggcgatgtga
      541 tgcaccggct ccacacaact attctttgtc attttatgga tgctcatcag tcaactgtca
      601 cctcttctca aagacccctc caatctaaat gtttctcttt gggcttttcc cagaactagc
      661 agctgaatga gcaaaagaaa agccacttag tttctaggca aaggaaaact ttgctctaaa
      721 gatctgggtc atttgggaag agcctcaaag
//
LOCUS       KCLJ01000450             592 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 50940cal ultra-conserved element locus
            uce-799, sequence.
ACCESSION   KCLJ01000450
VERSION     KCLJ01000450.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 592)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 592)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..592
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="50940cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>592
                     /note="ultra-conserved element locus uce-799"
BASE COUNT          147 a          151 c          150 g          144 t
ORIGIN      
        1 cccctccgtt acccaacaaa gtcttaggtt cttcccgctt gtaatttgtc gctaatcagc
       61 tgtcagtgtc ggagcaatga tgagaggttc atctcttgct gagggtaatg gccttaaaag
      121 tcaccgagtc aatgtcaatg ggatcgctcc aattcaatca gagccctgga tgaggaatgg
      181 cccccgctga cattagcact cattttgagc ccaagcatct gggccctagt aaataaccat
      241 cagtgggtgg gtccggggga caggtcatta gccccacgaa aaataaatat cgtttccctt
      301 gatggctgcg agtaatttag ctcagacgag gaaatttcac cctagattaa gtatgatgag
      361 ccaatatcag tcagaggagg ccaaacagtg agagcttgat gagatagagg gaaatttata
      421 tgcagctggc tgaatgcaag atgagtttaa agaaatgatg ttctcttccg ctccttgtcc
      481 atgggcaatg ccaggtactg tggtggctga cacctcccca cgcccttggg gtcccccagc
      541 gctcaggcac acgtctgtgg gctccctgcc ctctcagcag cagcagcccc tg
//
LOCUS       KCLJ01000451             622 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 51053cal ultra-conserved element locus
            uce-7987, sequence.
ACCESSION   KCLJ01000451
VERSION     KCLJ01000451.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 622)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 622)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..622
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="51053cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>622
                     /note="ultra-conserved element locus uce-7987"
BASE COUNT          210 a           90 c          117 g          205 t
ORIGIN      
        1 gaaatataat ttgatttatt tttcaaggaa gaataatatg cttctctagg gttcttaatg
       61 agatatttac ctgtattaga ctatactcac atacccacag tgtttgtgct tgttaaagcc
      121 tttcagtcat tctaggctta gggaaatagt gtccaaatgt accatattta gcttctatct
      181 caaattctcc cgagctgtca atttaggtgt taaagagacc atttgtaaag cttggctggg
      241 atttgccatt attgactgga atgtgtgttt atcattacat tcaatgatga aagtggaaca
      301 tgtagcatat gaataaatgt cagcagatgt ttcttttaaa tggcctgatt tcaacctcct
      361 gttgtttgtc ttgaatacaa atattaaaaa agaaaaaggc agaattttta tgacataagt
      421 gcaagggtag ttatacaaca aaaataatga tggaagtcag agaagaacga ggaaagtata
      481 attaataaga attatgttga tgctttcatg ctactatctg gtttgatatt ataaaagaca
      541 caagaacagc agttcagtgt gggatatatc actccgcagt cactccataa gtagtaagga
      601 aaacttgaat ctattctcag aa
//
LOCUS       KCLJ01000452             504 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 51161cal ultra-conserved element locus
            uce-7520, sequence.
ACCESSION   KCLJ01000452
VERSION     KCLJ01000452.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 504)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 504)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..504
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="51161cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>504
                     /note="ultra-conserved element locus uce-7520"
BASE COUNT          174 a           95 c          131 g          104 t
ORIGIN      
        1 aacctgtgtg tagcaaactc ttttgaatct tgtccttgaa acaaaaatta gtgccccatg
       61 ggagctcagc agtgtagaca accactaact gcagaatgac tgaaagcaga gctgagagtc
      121 cttgcagctg ggagggagaa ggggatgaga gagcgaggga agatgagaaa cccttcagga
      181 gccatttggg agacactcac tgggaagaag aaagaaagac atgcactaaa aacaacagaa
      241 acacaggtgg aaatggccta ctgggaaatc aggctgtcaa caaacaaaag ccgaaggcca
      301 gaaagcagtt tcagtagcag cccctgctaa cagggcttca gtgttcagta aataaattag
      361 cagcaggttt gactgtttgg aaattagtag tgacatgatg aaagcagcaa atgacttgct
      421 tttatctgga gtggaagcac taaacttcca aagaaatcct tgcctgtatc aggagaagca
      481 gagatgctta tatcagctta gact
//
LOCUS       KCLJ01000453             638 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 51271cal ultra-conserved element locus
            uce-400, sequence.
ACCESSION   KCLJ01000453
VERSION     KCLJ01000453.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 638)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 638)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..638
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="51271cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>638
                     /note="ultra-conserved element locus uce-400"
BASE COUNT          211 a          132 c          114 g          181 t
ORIGIN      
        1 ctatgtaccc aaagcaaagc tggcatttgt tgggcatcaa aaaaataaat aaataaaacc
       61 acacaactgt cgggaggggt tctctgaaaa ctggctgata taccttcagc aaatgaaagg
      121 gcaaaagaga tttcatgcaa tgctagtttg aaagcatcag ttcattaagg atattaattt
      181 tctgataact acacatttaa gcatgacaca ctggagcagt atctacagga tttagcaatt
      241 attaatgcgt gacagtttca aatgctaagt gaatcaatta aacagcagca ttcacaattt
      301 gagaagagat aactgcttca taactgccta agactacaat tttcacatga caaaaaaggg
      361 ccattcaggc tccttcaaaa cctgacaggt caagaaagaa gtttgaaaca aaagcacctt
      421 ataaccatca tctctcctct ttacttgtca gatcaacttt gctagtgtct ccgctgaaat
      481 ggcatcacca tgccagctgc cacaaggtga tttttcatgt cttgtcaaag aaatctttta
      541 ttctatttgc tctgcattaa catgttacat ttattgatca agccctttct gcagccacag
      601 cagggcactg tgctcttatg cctaagggag ctttgatg
//
LOCUS       KCLJ01000454             782 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 51376cal ultra-conserved element locus
            uce-3448, sequence.
ACCESSION   KCLJ01000454
VERSION     KCLJ01000454.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 782)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 782)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..782
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="51376cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>782
                     /note="ultra-conserved element locus uce-3448"
BASE COUNT          287 a          171 c          101 g          223 t
ORIGIN      
        1 actacactaa caaaatttaa atcgaatatt ggtttattga acatccttta tatggaacag
       61 atttgtacca aaaaggtgtt ggctaaaaag aagaattaag taaaagccat ttgttaacat
      121 ttacagaagt accttttccc ttacaaccaa ctgagttgca tgaaggtgcc agactacttc
      181 taatacagaa tcctcaaggc taccttaatg aaaatcagtg taaaaatgaa acttactttc
      241 caataactgg tacaggtatt atacaaaaat aaaactgctg aggaactttt aaacctctag
      301 cagattgttg cccacggcac ttacccttga ttttccttca gcatccttaa acagctccac
      361 gtatgtaacc tcaccaacta cataagacat acaaagggaa aataccaaga gacaatgcat
      421 ttaaacacca gtatctttct ttactgtgcc cctgtgcaca agtctacaga gaatcaccta
      481 ttattcacca acaatcaaaa ccagaccaac atacctcctg tcaatggcta tataatttag
      541 ctattttcag aaatatgcag cagccacatt ctcaaaagct aaaaacaaac aactatattt
      601 aacctaattc atactacaga tcatattttg gccagtatga tatagttggt gaacaaattc
      661 agatatacac agtcccttaa cctaacaaat gttcaacgtt cactgaaaag tgttacattt
      721 atcatcctac tcacaacacc tgttttaagg tgactttcta cctgaatatc ttcaatcaaa
      781 ag
//
LOCUS       KCLJ01000455            1015 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 51488cal ultra-conserved element locus
            uce-330, sequence.
ACCESSION   KCLJ01000455
VERSION     KCLJ01000455.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 1015)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1015)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1015
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="51488cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>1015
                     /note="ultra-conserved element locus uce-330"
BASE COUNT          314 a          203 c          180 g          318 t
ORIGIN      
        1 tgttccataa ttataaatct tctgaaactg taactcagga aaagactttt caaataaaat
       61 gtttcccaga aaagaatatt tggcagcggt tggctcttgt tttccctaat aaccattaaa
      121 agtctgccct agtaaagcat tttactgcaa cgtttgaaat ggtagagttt acattttatt
      181 taatgaatag ttgcagagca ttaaagcaac atctcgtcgg caaaacagct ccttatcctc
      241 gctttgtctc aattggtttt tttacatttc attttcaatg acatgtcagc cgtctctcac
      301 caacctcaaa ggaaagttga atgtggggct tacaaagtta agctgacatt tgctctcttc
      361 caataaaaaa tatttagtcc attaaacata aatacctgtc attatgatac atggactggg
      421 tacaagcctc ccgtttccct ctgatgttta ttacatccaa acaactgcag tgcctgcatg
      481 ttttcaactt tagtgtattg attaaacttt taaatggctg ccatataacc cagggacatc
      541 aggaagatta atttgcgtca atgttcatct gtaattcatt agccatttat tctttacaac
      601 cacatgggct atcaagaaaa tgcaggccat ttttcactct gcacaggctt gggaacagat
      661 cctgaaattt gtgctgcata caaataagct ccccaggccc ggccacttaa actgcttggc
      721 ttttcaaaag ttaaagttgg gaataacagc agtataaaac cagaaatgga caaaatatac
      781 gtcctcgggg tactagggat ttaactgagt ttgtccactg tcttttcatc catggattat
      841 ggtttcttat ttcagtcaga ttataataac tgaaacttgt tactgtgcaa aggccataaa
      901 taaaatgagc tgtacccccc tctaatatct tctaagatgc agttacttgg agaaagctag
      961 aaagcggcag tgaagtataa aaagctcatg cctcaaggag gttgtagccg tgaat
//
LOCUS       KCLJ01000456             554 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 51602cal ultra-conserved element locus
            uce-7636, sequence.
ACCESSION   KCLJ01000456
VERSION     KCLJ01000456.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 554)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 554)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..554
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="51602cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>554
                     /note="ultra-conserved element locus uce-7636"
BASE COUNT          158 a          115 c          113 g          168 t
ORIGIN      
        1 agaacaaagc cttctggttt catctgtcac tgggatggga tatgcaggga aattgggcac
       61 agtttgtttt cagcagaaga tccaccatat tcatggcact gggatagatg aaaagtgtaa
      121 agccataagc actacagtat gaagaaattt ttacattcct ctgcttggca taatgcaggt
      181 ttcctttgta ctgttttcta ccttttgact agatgagggc cagagggcaa ttttctccat
      241 gctcatgtaa tcttgtgccc cctgtgacta aataatggtc attatacaaa ctatattcaa
      301 ttgtaaaggg ctctgtggct ttatatgtag gattactatt ccccacagac aatagtgaga
      361 ataccaggtt aatacagctg tgacctcact gtgctcaatt taagctcagg ccccacaagg
      421 tgagaggttt gtgcatttac ccactgaacc aatcagttaa aaaactgatg tgatatctac
      481 cacatgttgc tccctttttc atgagggaat tgctctgtac cccccataag agtttctaaa
      541 gctcagtaac aatg
//
LOCUS       KCLJ01000457             702 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 51710cal ultra-conserved element locus
            uce-1745, sequence.
ACCESSION   KCLJ01000457
VERSION     KCLJ01000457.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 702)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 702)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..702
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="51710cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>702
                     /note="ultra-conserved element locus uce-1745"
BASE COUNT          238 a          144 c          140 g          180 t
ORIGIN      
        1 gcaaaggtat aaacaaaccc aaacaatatg gacttacaga cattagcgca gaacaaaaga
       61 gagggggaaa agcaaagcca actgatcaac attaaaaaaa taaaagactt tgcaagctcc
      121 caaaaccaag ccctccccag ctggaacaac aaagtgtctc atcttggcac ctctccgtgc
      181 ttgggaacag tttgtagcaa acagcccgcg atatgaaaat gtatttaatg caattaataa
      241 tttaagaagt gagagcatgt gctcttggag agttaaatgc ttgtcagagt gatagatgca
      301 cgcttcagca ccaatacatt tcgtaggaag agcagaggga ttttgcaaac ttgtgttgac
      361 cttgggttgc ggtggagagg aggcagattg cgaaggcacc cgcgtacggc aggactgcgt
      421 cagctcgcaa tttacagccc tctccccaat taaaggactg taaaaacatt aaaattaatg
      481 cagtcttaac tccagagcag gctctacttt cttaattagt gcataattat tcagtttttg
      541 atatcctgga aaattatcac atggaaatta ttttaggcgc agtaacaata gcaaaaatct
      601 ctctaccccc ccaactcgat taacatgtgg aagtaattaa cactttatta cagtgaaaat
      661 actattactg ctaatgttta atgacttttg ccattgcatc at
//
LOCUS       KCLJ01000458             560 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 51821cal ultra-conserved element locus
            uce-3817, sequence.
ACCESSION   KCLJ01000458
VERSION     KCLJ01000458.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 560)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 560)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..560
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="51821cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>560
                     /note="ultra-conserved element locus uce-3817"
BASE COUNT          159 a           93 c          117 g          191 t
ORIGIN      
        1 aaaattattt atgtagatca ctgaccactc ctctacttcc atgagccttt aattgtgctg
       61 tgctgcttgt gtatttaaat gtctaggtta gtgtttattt gtatgactaa gtgcaagggt
      121 ggatgggtaa aagaaaggtg ggatcgtgtt ttcctcttct ctctctcact ctctcttttc
      181 taaacaagct aagagttttt ataattcatc acctggctga cagatgagtt ctgctggaga
      241 atattagaaa atgtctcaaa tctcatatat atgctaatgg tatgctgaga ctggttggtg
      301 gtatgccgga gtttttaatc tgtctcgacc agtgtggaaa gtggaggaga caagtcattg
      361 cactcgacaa tttatgatca aacaactgaa ttgtaaagga agaaggacat gcagaaaagg
      421 agagtaattt tctgatttaa cagcgttgtt actacaaata aagaaatctt gattttgact
      481 gcactcgaca ttaaatgagt ttcctgtgcc ctgctctgaa tttttcattt tcagatttgt
      541 ataaagcacc ctgcttagat
//
LOCUS       KCLJ01000459             706 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 51930cal ultra-conserved element locus
            uce-2184, sequence.
ACCESSION   KCLJ01000459
VERSION     KCLJ01000459.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 706)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 706)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..706
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="51930cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>706
                     /note="ultra-conserved element locus uce-2184"
BASE COUNT          199 a          163 c          137 g          207 t
ORIGIN      
        1 tctgtctgtc tgcaagtgct atgtcagggt atttgctgta ggtattaggc agttagtcat
       61 ccctgctgct gagcctgcag caatatttct acaacttcaa agcccttaca aagaataata
      121 tcttttggct aattaaatca ggatataatg taacaaatcc ttctcttcct tgagtttctg
      181 ctttcataac ctaatcaggc attttactgg gtgaaacatc tctattaagt ctcatttctc
      241 agccacatga tacaaaaaca ggatgataat tgaggctgca taattgatgt gcgcaatgac
      301 agaatataga aaagggctcc attagccagg tcacatcatt agcatacatt acgttcaaca
      361 agattgctct cttcacctcc tatttattaa tgggttaatc cagtcccatc agcctgaata
      421 catcattgtt taggtccttt cctgtaagat acagcagctc agtttgacat tagggaagaa
      481 ttgctaccga gggcagtaaa atcccagaag tgccaggggt gcagtggtgc tgcttgcagg
      541 agcccttggc tccccaagaa accaaggatg gcatcaaatc tgcagcccca ggaggactcc
      601 tgaatgatcc cttctgtctt caatttcctg tctggattac cacatttctc agggagcctc
      661 tcccactgtc atattagctg ctgtttaaaa agaaactcaa agccaa
//
LOCUS       KCLJ01000460             614 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 52039cal ultra-conserved element locus
            uce-2853, sequence.
ACCESSION   KCLJ01000460
VERSION     KCLJ01000460.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 614)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 614)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..614
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="52039cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>614
                     /note="ultra-conserved element locus uce-2853"
BASE COUNT          176 a          108 c          116 g          214 t
ORIGIN      
        1 aatctgggtt tgcagtgaaa atacattttc atcttcagca gtggggagct accttacaac
       61 aggatcatat ttaataaaga gatatttagt ttgctattgg aagaggattg ctgcagaaga
      121 tataaaagct acttttttat ggaacttctg cataaatctt gtatccatag cctgatctag
      181 tgacataaat attagcagct tgtttctatt tcacctgctg tagaaccact gctgtcctac
      241 agcaataacc agcaagggaa tagagctatt tgctgctgtc ataaataaga cagggtgtca
      301 cagctgtttt catttgactg agcagtaatg gagttaatta tacttccagt ctctttgttt
      361 ttgatctgtg tttccaaagt catctgagct tctagaattc ttgcaatttt tttaaccctt
      421 ctttctactc acctggatta gacattgcag gtgatttcac tgtcctatga gtgttctatg
      481 aaaatctcaa acatcaatgt gtttagtttt cttgagcaac ataaagagag tgtggtcttt
      541 ttgaagacca ggcacatgga tgtagctaga aaacaaactt gttttattct ccagcaatgc
      601 agataatttg cttt
//
LOCUS       KCLJ01000461             697 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 52150cal ultra-conserved element locus
            uce-4231, sequence.
ACCESSION   KCLJ01000461
VERSION     KCLJ01000461.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 697)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 697)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..697
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="52150cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>697
                     /note="ultra-conserved element locus uce-4231"
BASE COUNT          208 a          133 c          143 g          213 t
ORIGIN      
        1 tctgctatgg gaagttttaa aaattcacat tttcttcaga caagcgtggg tcttcctaat
       61 gaaacctggg aatgaggtgc tctcacggaa gctttgaaag tgcatgcacc gtacttcata
      121 gctgagctgt aacaagactt taaatgagta aacagtgttt agattgaaca tgaaaagagt
      181 cggcatgaaa agacaggttc aaaatattac atgatgcttt gcaaaagtgt aaatgtgcct
      241 gcctttattt ttttttcccc ctcttggtaa atggcaaacg tttacaaccc aactaaaaca
      301 gtaccaagag aaatcctgtg tttgctcttt ggaagatatt caataaatta tagtgagctg
      361 caaatgtcac tggattggga actgtaagag ctttaccttt aagtctttaa gtaaagactt
      421 gcagctggtg cagtggcttg gtaatcccta atgataagct gcttttaatg tgggggtgag
      481 gcagttttca cacagatatt actgcattaa ccttactcta ggtacagtgc agatgtgcac
      541 aatattgtgc tttgcagcct tccctacttt attctccccg agtatccgaa gcctgcttta
      601 acagatcctc ttataccatg gtgaaaagat tgcagttcaa gcctattatc aacaaaaacc
      661 tgccaaaagg gctacattgt cagactttat gatggta
//
LOCUS       KCLJ01000462             634 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 52261cal ultra-conserved element locus
            uce-5396, sequence.
ACCESSION   KCLJ01000462
VERSION     KCLJ01000462.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 634)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 634)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..634
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="52261cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>634
                     /note="ultra-conserved element locus uce-5396"
BASE COUNT          219 a          111 c          107 g          197 t
ORIGIN      
        1 ttgttggcaa tattactagg agatataact tcctttaata ttgtattcca aacccttctg
       61 attattttta aagttttata aagtgaaagc tgtcacctaa agatggtaag cttattactc
      121 tgttttttag aaattaaata tatgtgtgtt tttaggaaac agatgtcact catatccttc
      181 ctttaaaacc aggaatgttt aacctatcag cctgttgcat ttgagacgtt aaaatgaaaa
      241 atgacatcta tgcccattaa tatcgtcaat gtataaacag cacagcgtga cacattcttg
      301 agagctgaag gctacaaaat ctctctgaaa cataaataac aaagcactca gaaggatatt
      361 tgatgttgat attcatctct gagaaaaaca ctgctgcctg ggcttcttat gaaaatagat
      421 gcagcccaaa tggatctcct gtaattggtt tcagatagcg aggtcaaaag aaatatgata
      481 caagaaacta ttatgtggaa caggcgaaac aagaatgttt atacaggcac tccctattta
      541 tactgacaag aggtgtatac tctgcagata accaaaacac ttgccagaag tcgaccagac
      601 tgaataccta ttttattttt tcaaatgact gcat
//
LOCUS       KCLJ01000463             305 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 52370cal ultra-conserved element locus
            uce-4849, sequence.
ACCESSION   KCLJ01000463
VERSION     KCLJ01000463.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 305)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 305)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..305
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="52370cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>305
                     /note="ultra-conserved element locus uce-4849"
BASE COUNT           67 a           67 c           69 g          102 t
ORIGIN      
        1 acctccctgt gcagcctctg ttcttcatcc attatttagg cttttctgac tgtaacagca
       61 acattcgcct tgtatacctt gtgtggggtt taaaatatag ataaaagcag aaggtcagac
      121 ttgaaacaca gattctgacg gttgctgctg actttgtctg gaagctacaa aatctggagt
      181 tttctgtgcc cagcaatggt ttcggtacaa ttgggtctgg ttgatattcc tgcaaactgt
      241 cttggtgtcc tttcatccag cctttcagtt tctaaatgtt ctggggcctg gctggcttca
      301 ggaca
//
LOCUS       KCLJ01000464             660 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 52475cal ultra-conserved element locus
            uce-6931, sequence.
ACCESSION   KCLJ01000464
VERSION     KCLJ01000464.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 660)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 660)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..660
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="52475cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>660
                     /note="ultra-conserved element locus uce-6931"
BASE COUNT          209 a          128 c          117 g          206 t
ORIGIN      
        1 ctgacagacc cttaactata gtggcactac tgggtgcagc tataatatta ccctcataat
       61 tctactatat aataacaaca aaggaaaaaa aaggtgaagg gtcattgtgc tttgtcttta
      121 gaattaagat ggctgtcttc atccttacag catactctta attctggaga cacatcttaa
      181 taacctctaa atagttccaa caaaagagcc gtgtcagagg aatgagcagg ccccaaggtg
      241 tttcaactgg agtgttttca tctgccttta ttgctctatc cctctccaga attaaggcaa
      301 taacctgtga taaattattc aggaactgct acagggatca aagcaaaatc attctgttaa
      361 agtgctgttt gcaacatttg gcacttagtg tgaaaacttt taatgtgtgc aagctgaaaa
      421 tcaacgattt taaataattt aacagcatgg agtttctaca aaccagctaa agatagcatg
      481 ttgctattta actgcttttt cttcagatcc cttttccatg tatttgtagc aaatctgatg
      541 atgtcacaac tataaacaaa gtactactga gattctaact gcccaggcag tagattcctt
      601 acccacattg tcaggagaaa tcttaacatt cttcggagtt aggtactgtt ttaatagtgg
//
LOCUS       KCLJ01000465             408 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 52587cal ultra-conserved element locus
            uce-1162, sequence.
ACCESSION   KCLJ01000465
VERSION     KCLJ01000465.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 408)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 408)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..408
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="52587cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>408
                     /note="ultra-conserved element locus uce-1162"
BASE COUNT          144 a           62 c           65 g          137 t
ORIGIN      
        1 ggagcggatc agaaatggta cagaattttg cacttaattt cctcagttat catttacaat
       61 aagaacctct tggcttgaca gccaagtcta aacagtagta aattagtaca aatttatact
      121 gattttactc taataatcgt aataaaagct tatagatttg gcactaatta cataaatgcc
      181 taatgatctt gaaaattact ctggttagaa atatattact aatctaaact ttgttgttgg
      241 ctggctttga aaaatcagaa cattagaaat ggttcgcttc acttctgcaa agcactttaa
      301 attgttcaag tagtttaata tattcaagag gaaaaaaagc atttaacttt atttactgct
      361 ttaagttgag tgtgtaggct agccaaactt ggaaacttta cccgaaaa
//
LOCUS       KCLJ01000466             394 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 52693cal ultra-conserved element locus
            uce-7151, sequence.
ACCESSION   KCLJ01000466
VERSION     KCLJ01000466.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 394)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 394)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..394
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="52693cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>394
                     /note="ultra-conserved element locus uce-7151"
BASE COUNT          137 a           66 c           62 g          129 t
ORIGIN      
        1 atttgtatac agctccaggc aatataaaca tggctggtta gaatcattta tatagtataa
       61 gcctttgtac tccatacttc atggaagtta ataagtaggt gtcaaactct gaattaaaat
      121 tcccagaaga ggacacagca caaaggacaa taaaaatgat ttttaaataa tcatagggat
      181 aaatagcatc cacttctgac aaatgtaagt gctggcataa aatgttatta ggctacagag
      241 attttctttt gttcaggaag tatgttttat tctccagcag tgtcattcat catcctaatg
      301 agccctcaaa atgtaaatta aatagcaaag actgattcat tcaaaaacat ctttgtgctg
      361 tgtgtaaaac cttttctcta cttttatcct tata
//
LOCUS       KCLJ01000467             624 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 52905cal ultra-conserved element locus
            uce-5179, sequence.
ACCESSION   KCLJ01000467
VERSION     KCLJ01000467.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 624)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 624)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..624
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="52905cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>624
                     /note="ultra-conserved element locus uce-5179"
BASE COUNT          186 a          153 c          121 g          164 t
ORIGIN      
        1 aaagtatttt accaggaaac acaacagaga caggccttct catttacagt gagaccccag
       61 agagcagtaa atttacatac acaaaggact agcatcaacc cctgaacctt taatgtttat
      121 tttgatagcc caccctgctg gtaaggcctt ttgttaagaa gccaggtaca acaaggcaag
      181 gatccaaaca aacaacagtg gtagctttgt tgaccaggtc atatgatgtc ctgcccttga
      241 acagtacccc ttgtcttttt accctttgcc cctagaaaat gaagttagtt cgagtccctg
      301 tggcagattt agcatttcct ttcagtgtct gccaatctat caaaattcag ctaccgctgt
      361 gaacccatca actcagtgca aaaaagaaca aggcttacca cggaccccct caaagtagca
      421 atcatttatc ccttcctgaa ctttagctga cctttgtgag cacgctagca gttgaagcat
      481 gcagcacctt ggcggggacg atcaaggctc tgggtttttc tctctcccca cccagcggag
      541 cgtttatttc gtttcatcaa taagaaggga aataaactct tcaacaagag gatgcaattg
      601 aaatataaat actgcattta ggga
//
LOCUS       KCLJ01000468             418 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 53014cal ultra-conserved element locus
            uce-2745, sequence.
ACCESSION   KCLJ01000468
VERSION     KCLJ01000468.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 418)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 418)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..418
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="53014cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>418
                     /note="ultra-conserved element locus uce-2745"
BASE COUNT          119 a           92 c           92 g          115 t
ORIGIN      
        1 atccctcacc ccggaggagc cctgctgctg ctgatccctc cgccggggtt gggtggcgga
       61 ggagctgcca gttctgcgga gccggacaat gaggaacaca ttgacaaagt gttcacatta
      121 ttggctgatg ggtctgcatc agtcactcat tcacaagcac aaggtctaaa ttgcagaacc
      181 aattaacggc actaatagcc cttgcctgaa ttaatctttg agacaaaaga ggagagaagt
      241 ggaagagcta ttagcaaatc aagctgtacc atccctgctt tattgcagga atctaagtgt
      301 ctgtatttgg ctattatgaa ctgactgcaa ttacagccct catttaaaat gattaagtgg
      361 ttataattat ttttcaatta aaacttagat cttccattta tacaacattg caggcttc
//
LOCUS       KCLJ01000469             529 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 53123cal ultra-conserved element locus
            uce-5588, sequence.
ACCESSION   KCLJ01000469
VERSION     KCLJ01000469.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 529)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 529)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..529
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="53123cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>529
                     /note="ultra-conserved element locus uce-5588"
BASE COUNT          151 a           87 c           88 g          203 t
ORIGIN      
        1 tttcctgtaa gttaatggta gtccaaactt tttgtcaata tatcttttaa agactagcat
       61 taaatttagg tttgcctcct aattcttttt tattcttcac tacaacccaa agacttcttt
      121 taatggacat tagttaaggc ctggaattga gtagacattt gtggacttga aatttggaac
      181 agaattgtcc tttatagttt ttccatggag gaaaaaaatc ttcttgtgag aataaagact
      241 ttagcctaat ctcttgccat ctggaaaatg tagaagccag aggttgttgg caccaggtca
      301 catcccttat gtaaactgtc aaattctttt catattaatg gcatatcaag ttaaacccat
      361 gaggtttgtc attggccaga tttattgatt tcttttttta aattttgatt ctgccctatt
      421 tgcttaatag tgttttgtag taaacattaa tcatctcatt ttagtgcagc atttcttagt
      481 ctttcttaat aggggatgat tagagccctt aatgtgaaat ccccatgaa
//
LOCUS       KCLJ01000470             507 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 53232cal ultra-conserved element locus
            uce-3352, sequence.
ACCESSION   KCLJ01000470
VERSION     KCLJ01000470.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 507)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 507)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..507
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="53232cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>507
                     /note="ultra-conserved element locus uce-3352"
BASE COUNT          122 a          127 c          102 g          156 t
ORIGIN      
        1 agaatcataa cattccggtt atccatcagg aaaatttgac tgaagggcag ccttaagaga
       61 gccaaggtag caggcaaacc tgcactccct tccccacccg caggacaggt agtctttgaa
      121 gactgtgaga aggtgcaggt gtttatttca gcaaaagctg cagtgatgtg taaaaagaga
      181 gggaagggat ctccccgctt ggcctctgta taatgccatt tgaatctttt ttgtttggtg
      241 gtaagtttta atagttatcc tttgaggatt ttccttgcga gcttatctga atacaccaac
      301 agtctttttt gtaatattcg catttcccct ttggttcagc cgagcccact gacagatcat
      361 tcaaattcaa ttgttttatg tctaagccga acagctaatt aaagtaggga tgattaacct
      421 gactggcagt gtcgctctct ctccctcgct ctctcgctcc ctccctccct ccctccctcc
      481 tgttccaatc agtctttttc tcacact
//
LOCUS       KCLJ01000471             559 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 53332cal ultra-conserved element locus
            uce-7469, sequence.
ACCESSION   KCLJ01000471
VERSION     KCLJ01000471.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 559)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 559)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..559
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="53332cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>559
                     /note="ultra-conserved element locus uce-7469"
BASE COUNT          183 a           96 c          115 g          165 t
ORIGIN      
        1 gaatagaaga ggatgcaatc caagttcaaa taaaatatcc catttgacag gctgtgctga
       61 tcccatggag taatgatgct ctagaaggtg agtaaatgta tgtcaggaca aggatgattt
      121 aagattaccc cacttctgca tgagattgga tctattgtaa ccttcctaaa cctttgttac
      181 ctttgtaatt taaactgaca cgttaaatgc taatgcaatt gatgggggtg aacaagtggt
      241 caaggaacaa cctgatctga ctgtataatg catcagagaa ttgcaaaaat atgcaggtca
      301 gatgtaattt tgacagaaaa tggctcgctg caagggttta tgtttccctg gatggtctta
      361 aaaagagttg gactatggta agtaccacag cactcatacc aagttaaact tgatggtcca
      421 agttctcaat atcctcagat ttcattatca gtttttattg gaactgggat aataagatta
      481 tagaattaag agaaaagtta tacccatttt cttcagctca gcagccctaa tgtgcaaagg
      541 aagtgacact catttctca
//
LOCUS       KCLJ01000472             567 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 53436cal ultra-conserved element locus
            uce-790, sequence.
ACCESSION   KCLJ01000472
VERSION     KCLJ01000472.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 567)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 567)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..567
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="53436cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>567
                     /note="ultra-conserved element locus uce-790"
BASE COUNT          183 a           90 c          111 g          183 t
ORIGIN      
        1 gagcaagatt acctctctcc tattgaaaat gagataattt tgtgtaactg caggtaaacc
       61 agtggttaac ctggctggaa actgctgaag aagaagaatc tgaagaagaa gctgactaaa
      121 gaaccagcca aagccttaaa ttgtgcaaac atactgttgc tatgatgtaa ctgcatttga
      181 cctaaccact gcgaaaattc attccgctgt aatgtttcac aatatttaaa gcagaagtat
      241 gtcagtagga tattctctgc aaaaggtttt tgtagtatgt cttaatagtc tacaataaaa
      301 atattttaga gtatcttcaa tgtttagata acagtgtatt agcagcatgc aataattaca
      361 tcataagttc tcgagcaggt tgcaagggtc ttctttgctg ccagttatca taggctgttt
      421 ttaagttaga aactgaatag caacactgaa tactgtagaa atgcactttg ctcagtgtaa
      481 tacttgagtt gttgcaatat ttgattatcc atttggttgt tacagagaat ccttaactgt
      541 aatcgatggt tgttgccgta atagtat
//
LOCUS       KCLJ01000473             640 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 53544cal ultra-conserved element locus
            uce-4176, sequence.
ACCESSION   KCLJ01000473
VERSION     KCLJ01000473.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 640)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 640)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..640
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="53544cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>640
                     /note="ultra-conserved element locus uce-4176"
BASE COUNT          197 a          165 c           97 g          181 t
ORIGIN      
        1 ccacaagaac gggatccttc catttcagca ttatcgttaa aacaacaaca aataatgcca
       61 ctcttcactt ccacgacact ccgcattcag cacgcaccaa gggtctaccc ctctgaaaac
      121 agcccatttg tttaaaaaca aacaggaaac aaaacaaact tacctgctgt tgttgcagat
      181 gcagcagttc tactgtgctt acttcagtgc tcgtgtcacc acttgatctt ccatctctgc
      241 tgccagcatc taattggctg cttagagtgc tcattccatt ttgattcatt gaactgttgc
      301 ttattgtctc tgtcgcagat tcctgcatca tgacttaata cctaaaagtg attaagaagt
      361 atcaattaac acacgcgtta caccttcaca cttccattat caagatgtcc ctctctgcca
      421 attacacaga cagcatcttt agaagaagaa aaaagcctcg cagagccgtt taccaagaaa
      481 aactctgctt tcatacagct gctaatcact ggaattatga tttctataag caagctttgt
      541 gtgcttacat ttaacggcca aaataacaca ccatgcacgc agcatggtca atagcattta
      601 tgaacgacta cgttttaaag tctacctata aaaccagttt
//
LOCUS       KCLJ01000474             748 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 53655cal ultra-conserved element locus
            uce-5277, sequence.
ACCESSION   KCLJ01000474
VERSION     KCLJ01000474.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 748)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 748)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..748
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="53655cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>748
                     /note="ultra-conserved element locus uce-5277"
BASE COUNT          225 a          128 c          141 g          254 t
ORIGIN      
        1 ggtgatccca gctggcaggc agttccagtg tttgcccaga gcaattcagt ttcagtttta
       61 tgcagtagag aggcaaacca gactccatgc aggaggaaat tggcatttgt ctggacagca
      121 gaagatccac atctcactca aggagtgagt ctatacaata gctgtgctga tcatttcctt
      181 aggttttaga gaaattttaa ctttacagac ttcatggttg cttgatctca ctacagtaaa
      241 cagctccata tttttccttt tcatgtttta tcctgaagca acagagcatt acattaattg
      301 acttgtctta ttaattcaat aagctgcttc caagatgaaa tgcttagcta tgcttgcttg
      361 tttttggcac tttttggttg ttggaagaaa agctttaagg ctagaattgc tctgatgttt
      421 tccacagttc actgaataat tttatgcact actgaagatt tgccacattt ggaattactg
      481 caaactgcta ctttttcatc atattataat ttaattcaca cttttagtat gataagaaaa
      541 catttaacag tttgcatatt tgagaagtat atttgttctg ccagaaagtt gtggttaaga
      601 attcattatg ggtcactcat ttctaggatt tgtaatttgg gcttaagata catttagaag
      661 attaaagatg acatagaagc caccccattc aaatgaatta tatgcaagaa atccagggaa
      721 aaaattgacc ttgctgtaaa tatagggc
//
LOCUS       KCLJ01000475             796 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 53760cal ultra-conserved element locus
            uce-3863, sequence.
ACCESSION   KCLJ01000475
VERSION     KCLJ01000475.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 796)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 796)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..796
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="53760cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>796
                     /note="ultra-conserved element locus uce-3863"
BASE COUNT          297 a          140 c          155 g          204 t
ORIGIN      
        1 tttacttatt tatgctttga tgaactgcta attgacttca tctctgaggt cacataaagt
       61 cataagaaaa taaactgagt caagtgcttc agccagatca gcttacacag agtaaccaga
      121 cttcctgcac cttatgattc cataaaaaat tgctcactta aaagcccacc tgggacagag
      181 atttggaaag aactagctgg agcactgttg tctcagcatt tccacatgca aagagcaaaa
      241 aattaaagaa aatagagtgg atataaacag tactgtatat tgagttaata cagcccttgt
      301 atggaagtta taccctccag tgaccttcta gaattgtatc agcttgctac atgcatgtct
      361 tcagagtcca aacatgtgtg aaagagacca ttcgtctaca gaaggatgga tttcgttttg
      421 ttgtcgctgg aaccgggaca gcagacatgt atatttgcca cattgcaaat aaaattactt
      481 caacagaaat cacataaagt tcaaaagctt tgaaactcca gggtaaaatt taccatcagg
      541 caaatgatga gatcttccac acatgctttt ggtgcccagg catgagccaa aagcagtgca
      601 aaaaaagctt tcacatgaaa aattaatata aataaggtgt gttcatgatg attacttaaa
      661 aagaaagaaa agatggtcga gaaaaagggg catcctgcca aacatattag agatttaaat
      721 catggaattg gaaaaagggg gtaaaagaaa gatggactgt gataaaatac aaaagaacaa
      781 atacaaacag atggac
//
LOCUS       KCLJ01000476             723 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 53976cal ultra-conserved element locus
            uce-2771, sequence.
ACCESSION   KCLJ01000476
VERSION     KCLJ01000476.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 723)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 723)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..723
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="53976cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>723
                     /note="ultra-conserved element locus uce-2771"
BASE COUNT          255 a          124 c          130 g          214 t
ORIGIN      
        1 gtgctaaatt agaccattaa acactgtaaa gccaatggtt gctgaagtgc tcccacagcc
       61 ttgtaattta tactatgcta cacagggcag agtaagttgc tcacgggtct cattggatga
      121 cttaacagta cattttcaca taattaaagt ggacacagct tagaaaaatt aaaaggctag
      181 aatataaagc tcagctgcaa ataatattaa atggcattat caataacaga gatcccaggg
      241 tttgcatatt aattgtaaga aggtgctaat ttgagtgttt taagcttgca ttcacaagct
      301 tgtttacatg ctttgttcca cctggacctg tttggaggtt tgtcaaaaac ctaacaagca
      361 gaaaaagatt gcatttgaaa atacacatac atgtttaatt aagccagggc caccgaacat
      421 tcctcaatat atttagctgt tgagatttaa gcaccaccag agcatcaggc attatcacct
      481 tttgaagtac tgcagaatct ttaatattta aagcacaaag cagactttaa tataaaattc
      541 tagcagacca cagaagatta aagacgcatt ataaatgtga cagtttgtaa atggaacacc
      601 agtattaaag ggaacccccc tgatatttta tagcatattt ttcaggtgta tactaaatta
      661 taaatacaat taaatagcag taattattct ctggaagggg atggcagttt aactgttcta
      721 gaa
//
LOCUS       KCLJ01000477             782 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 54085cal ultra-conserved element locus
            uce-257, sequence.
ACCESSION   KCLJ01000477
VERSION     KCLJ01000477.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 782)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 782)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..782
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="54085cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>782
                     /note="ultra-conserved element locus uce-257"
BASE COUNT          258 a          123 c          141 g          260 t
ORIGIN      
        1 tttttatttg aatgtttttt gactgttcag cttcagttaa accttttact gatatgcaaa
       61 caagaagaaa agtactttaa cagacatctg catttgtaac caaattaaca tcaaaatttt
      121 gaattaagaa aatgtattga catcaaaaaa aggcttcctt taacaacaga tttctaacat
      181 aatacacatt gatttcagtc caactttcag atgtgataaa aaattagaac attgttataa
      241 ttagttcagg gagaactcag aagtaaactt acttaattta tttgcataaa ttgccattct
      301 gttatcttta aaagcaaatg caaattggct ctgtctgata tgatgatggt tatttggctc
      361 aaaagtgctt caatttgcgt agcaatctgg tgtcgtctct gcagtgaggc gatcccaggt
      421 aacatacaaa tcctgaatta ttccagaaat tagtatgttt aaagcatcaa tttaagtgct
      481 aattgcagta gtaatgagaa aaagcagtac tactgtgaga tttgcatcta ctgccccatc
      541 agtatgcctg gaacggctgc tgactggcag aggatttggc tgctaattaa ataattgtat
      601 gcatggcagt gttctcgtct gattcaatag atgaagatta atcctcagat aaatatgttt
      661 ggctggtatt gaaatgtctt agcagtttct tcaaaaagtg tgtacgttca cactgtgagt
      721 gactctatgc ctcctatgtt tgtaaataca gatgcatata agagggaaaa acataatgtc
      781 tt
//
LOCUS       KCLJ01000478             568 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 54195cal ultra-conserved element locus
            uce-4265, sequence.
ACCESSION   KCLJ01000478
VERSION     KCLJ01000478.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 568)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 568)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..568
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="54195cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>568
                     /note="ultra-conserved element locus uce-4265"
BASE COUNT          185 a           99 c          106 g          178 t
ORIGIN      
        1 attcgattat gttgcagttt acatgtatac gaaggccaga aactgtgaag atgatacctg
       61 cttaaaagga cccaggagat caggcaaaac tttgacaggg gaaacagaat tgtgcagtcc
      121 agtgaagaat taaactactg ggagtaataa tatgggctga tgcactcaat atagcagtaa
      181 tgccctccga gaagggtagg aaataattca gttcctctag gctgcacaga agctaaatac
      241 agtatgacaa gaaatagtag cagtactcat tacgtctgat tgctaattac ccctttgaat
      301 gattcggtta tgcctgctac tagataatta gtttagtaat ttatggctgc agcacaaact
      361 agtattttaa ttttcactga acagttttcc caacacctac agttgagatt atatctcctt
      421 ttttactcag tttcaaattg cctttttcga taactgatgg agggatctag caattatttc
      481 catttcccag catagcttta atggtaaatt gctttttatg taattgtatt caaatgtaaa
      541 ttatataaat aaaacaactc tacctgag
//
LOCUS       KCLJ01000479             521 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 54304cal ultra-conserved element locus
            uce-7866, sequence.
ACCESSION   KCLJ01000479
VERSION     KCLJ01000479.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 521)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 521)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..521
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="54304cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>521
                     /note="ultra-conserved element locus uce-7866"
BASE COUNT          147 a           87 c           99 g          188 t
ORIGIN      
        1 tttttacctg tcctttttct ggtctcttgc gtgatttaaa ttcaatattt gaaagagctt
       61 ccgttgcaat gctcactttt ttttactggc atgctctgta atgtaggtaa aaggtaatac
      121 atgatgtgat gaaaggcaga tagctttaca atgtctttat ttttagcaga agcagtcctg
      181 cgccagctgt aacagcagca tctgtgacca acacacaggc ttctgaagtc actgtgccac
      241 aaataaattc cagtgaaagc tcagggggta aggaaatagc atattgtttc tattgaattt
      301 ataagacatc ttccagcttg agtcttctag tctttgcata acacatgtaa tgtgttcttc
      361 ttcagacaca tagttcaatt tcataaaatc tgctgtgata ttttttattc ttagaacaat
      421 agcagtagtg ttccaatgac tgtaggtctg tagtttggtt agctgaatga ggtatctaaa
      481 gctggaagaa caatatttat ttttaattca ttttgtagtt a
//
LOCUS       KCLJ01000480             612 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 54411cal ultra-conserved element locus
            uce-4707, sequence.
ACCESSION   KCLJ01000480
VERSION     KCLJ01000480.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 612)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 612)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..612
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="54411cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>612
                     /note="ultra-conserved element locus uce-4707"
BASE COUNT          171 a          147 c          140 g          154 t
ORIGIN      
        1 tggaagcctc ccttgtgagt gcagctccag cccccagcgt gtggccccgg ctgcctgggg
       61 cagagcaggg agcaagggtg gctcgagctc catccctgag catggccagc agcctgcact
      121 gagaggctga gtcattattt tattagcagg acccacaact actttaatgt gggcttaggc
      181 tgcaaaaaca aaaacataca taaaagcatt tggaattact tcataaaata ctaaatcacg
      241 atattaaccg actgaccttt gctctatgca gacctgctaa ttttagcaat tacagccaac
      301 aacttgaaca tatcaagtgg gcaactgttt aacaataatg acatctgctt ggaaaatcaa
      361 attatgtcta aacatcttta aatccccact aggggatacc tgcgcaactg ttagtccctg
      421 tttaatagga ttttaaactc acagccggct gcacactgtg gtggcagcag gagtgacaac
      481 aacaggacag acatcccatt aagcagagtg tccttggaca gtgatggaag tggtttgggt
      541 tttgacagct taatctgata gacgggtgca ttagctggat cctttgcctg tccctgcaga
      601 tactgctccc ct
//
LOCUS       KCLJ01000481             600 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 54519cal ultra-conserved element locus
            uce-696, sequence.
ACCESSION   KCLJ01000481
VERSION     KCLJ01000481.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 600)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 600)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..600
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="54519cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>600
                     /note="ultra-conserved element locus uce-696"
BASE COUNT          235 a           92 c           80 g          193 t
ORIGIN      
        1 gtatgtacac tgatgtcaag ataataggag gcaaaaataa ctaaaaagaa gagacatatc
       61 tctagtctaa acaaaacagt gtatttttaa ttgaaataac attcagtaga actgaacatc
      121 aaaacattta actttttcaa agttttcagc attaaagaat taagatgaaa cacaattagg
      181 aaacagaaaa ctgcaacatt gtagaggatg gtcacttttt gtatgtcatg tggctttaaa
      241 aacaagtcag ataaatgatg atgccattaa aactgaacta attaaagaaa gcttctttta
      301 agaactcatt aactgcaacc tcatttgcat aatgatgcat attaattaag ttttaatgaa
      361 tctgaatttg caccaagcct attcatgttg gctttgaaac aaattgaaca aattagttaa
      421 aagctttttg gaatctactt ttcacaccaa acaggatatg aatgcaatca tctccacaaa
      481 aaagaaatat ttttctttta atttaattca aaggtatgca gacccatcta ttaattattt
      541 ttaaatgcaa taatttccac cttttctttg caaaatcaac agtattactc attcttgagc
//
LOCUS       KCLJ01000482             457 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 54628cal ultra-conserved element locus
            uce-2352, sequence.
ACCESSION   KCLJ01000482
VERSION     KCLJ01000482.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 457)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 457)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..457
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="54628cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>457
                     /note="ultra-conserved element locus uce-2352"
BASE COUNT          108 a           83 c          107 g          159 t
ORIGIN      
        1 cttgtcacct ggtgttgggg accaggcaga gcctggggac agaggctgca gcccagggtc
       61 tcacccagcc ctccctgggc attagccctg ctttggctct tgtataaata tctgctgcat
      121 ttccaccagg agttattgct gttatatatt ttacagacac tttactgtca tctaagtggt
      181 ttattttatt cccacagcta ggagaaaact acaaaaggaa ttttgtaatc tgaatgtgat
      241 tgtgggcaga gagtaatgtt ttgaaaagga gctgagagta aattatatca gtgctttatt
      301 gtgtttaagg agacttttct attgtgctag gagttaacat tagttctcaa agttattaac
      361 tggatgtggt tttattatga ctgtgtgttt tgtcaatata tgactttttt tgttaggctt
      421 ttcggtgcca gttcggctgc aactttggca ccctcca
//
LOCUS       KCLJ01000483             624 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 54733cal ultra-conserved element locus
            uce-3825, sequence.
ACCESSION   KCLJ01000483
VERSION     KCLJ01000483.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 624)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 624)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..624
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="54733cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>624
                     /note="ultra-conserved element locus uce-3825"
BASE COUNT          175 a          128 c          142 g          179 t
ORIGIN      
        1 gtatttcact acacaagtgc ttttgaaata aggaaaaaca gggggaaatt gcagtgggct
       61 tagcagacaa aattgagcag ttgactgtgg caaggcatac agtacttaaa tgcaagagct
      121 gatctaatcg ttgttctcga ggaagctttt tgctgcattt tagcacacaa agcttttcgt
      181 tttctctttt gtggcttgag ctgctattta agaaagcaaa aatcaataaa cctttccagc
      241 tttcaatctt ttgccccaaa aggtgttttt ttgggtagtg ttttgtcatt cataagctgt
      301 ggcgacaaat ccttgacatc attcgtggat aatatcgatc agctcttccg ttgcaccaaa
      361 ggacaaatag aaatcattta tctgtctgga ctccaaaaca gcaaaagaca aagggctctg
      421 ccagccaccc atgacaatca gcagctgaag gtattagcag ggggtcaagt tcagaggtca
      481 gcggtcaaac aggttgtcat cagtttctca caggcagcag agtggtttta tttgccaaac
      541 cctggagcca ggtgggtgct ggtttgggtt aatttcctgt aaatttgggg tcttaaatcc
      601 accttcccta ggcccaggca aacc
//
LOCUS       KCLJ01000484             611 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 54841cal ultra-conserved element locus
            uce-2971, sequence.
ACCESSION   KCLJ01000484
VERSION     KCLJ01000484.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 611)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 611)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..611
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="54841cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>611
                     /note="ultra-conserved element locus uce-2971"
BASE COUNT          175 a          132 c          114 g          190 t
ORIGIN      
        1 gggagctccc aaatgttcaa ttcctctgaa aatctggctg gaagttacag ttttaaaggg
       61 aattgtcatg gttatctaaa gtgtgtgcaa tatccatctg gcttacagaa ctttcaaaaa
      121 tctttcaaaa tgtaacagat ttaatttctt aatagggagt ctacatatcc aacagaaagg
      181 tgctagattt tttttgttaa atgtggcatt gtccctttaa ctgcaaaatc tatagctgct
      241 gtagccatgg taaaataact gtaccaggtg ctcatgtcta aataaggtga ctattctaca
      301 atctttagga agaggaagta gtcccacctc gtcctccact ccctcggtcc tatgacttta
      361 cagagcatcc tcccataatc ccccctctgc ccagtgatag cagctccttg ctctgttata
      421 gcaggggccc agtacatctg acagaagaaa agaagatgta ccaagttcaa ggatatcaga
      481 gaaatggatc ttactgtgta agtggcttaa actgccacgt tgttcgagct gcatcatttg
      541 ctcttcacat tctctgttct gtgcaacatg tcttaagact taaaaaattt agattcttct
      601 cctcactagt t
//
LOCUS       KCLJ01000485             435 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 54952cal ultra-conserved element locus
            uce-4598, sequence.
ACCESSION   KCLJ01000485
VERSION     KCLJ01000485.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 435)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 435)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..435
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="54952cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>435
                     /note="ultra-conserved element locus uce-4598"
BASE COUNT          121 a          107 c           88 g          119 t
ORIGIN      
        1 ccctttctgc tgcaaaatgt caccaattta ctttagcctg ggggcccatt tcgaatttta
       61 ccaccaatat acgagaaatg catttttcaa gctgttacca cttaactgta ctgatatcag
      121 ccactcaggg gacacaatat tgtttacaca tcctgctcta tggaataagc acggatgcca
      181 aaactctgcc tgggttgtga aggagacgtt tactctctgt tttatgagat ttcctcgatt
      241 tgtggctgcc tcaatggtcg taaaaacagc tgtaaatcaa aagagcacca caaaattgca
      301 ataacaactg tcgaactcgg ctctaaaaag cataactccc agcaccagaa ggtggaaggc
      361 tgatttaata ccaggtgtgg gggagcctga cactgtgtct gcccacagct attttggctg
      421 ctcccctatc gctca
//
LOCUS       KCLJ01000486             489 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 55062cal ultra-conserved element locus
            uce-6521, sequence.
ACCESSION   KCLJ01000486
VERSION     KCLJ01000486.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 489)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 489)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..489
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="55062cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>489
                     /note="ultra-conserved element locus uce-6521"
BASE COUNT          142 a          102 c           88 g          157 t
ORIGIN      
        1 ggatgtcatg tagacagact actgaggaac cctgccatgt taccagggag caagctgttc
       61 ctaactttgt tttaaattta tgaagtcctg acacaaaaac tcaagatgaa gtcaactctg
      121 tcaagtggat atttttctca ttactcaaca cttaacaagg atgacaagat taaatagtca
      181 ctcatcttct gtgccattat acctcctgca tgattgcttc aaattaagtc taacagtcaa
      241 tgaaatagtc aatatttaat ttactcattg caggtggtga tttagctcca gttacaatat
      301 catttagtaa cagaaatatt ggtatttatc tttttatgac tcttcagaaa aggtccacgc
      361 agctttaagt catgtgtcac tctcgggtgg attttgaaca ccaggggcca attccttttc
      421 cctgctttcc tgggcagtga tgatgcacaa gatgacttga gtttccagac tatccttcta
      481 ggatcaccc
//
LOCUS       KCLJ01000487             467 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 55169cal ultra-conserved element locus
            uce-5830, sequence.
ACCESSION   KCLJ01000487
VERSION     KCLJ01000487.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 467)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 467)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..467
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="55169cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>467
                     /note="ultra-conserved element locus uce-5830"
BASE COUNT          124 a           90 c          105 g          148 t
ORIGIN      
        1 tctaatcagg agtcatcaag acctctaatt agcagggttg ttcagactca ttgctttctc
       61 tttaatggcc ataggacatc caaatggttt taaattatgt accatgggct cctaatcagt
      121 ttattgaaca tcataaattg ttaaaaggag ttaatagctt gtgttccttg gtagaaagtg
      181 ctaatactcg aggcagagaa ctcatcaaat gaagctcgtt agggagggga ggagggagat
      241 tgcgtctcag tgtctcattt tgttttagta attagctttt actggattat ccgatccaaa
      301 tctttattca gtttactctg tcaaatctag tttgcatttt aaatggaaaa ttgacacgtg
      361 gaacaatttg tctcctgact gggtgaacgg gtccactggc aggaggctcc tgcaggggag
      421 ttatcaccaa agccattttc cccagcactt gatgtgccct ggcctgc
//
LOCUS       KCLJ01000488             629 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 55273cal ultra-conserved element locus
            uce-744, sequence.
ACCESSION   KCLJ01000488
VERSION     KCLJ01000488.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 629)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 629)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..629
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="55273cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>629
                     /note="ultra-conserved element locus uce-744"
BASE COUNT          189 a          119 c          124 g          197 t
ORIGIN      
        1 caaacttttg gactccttgt gatctagcac atggagcctc ggatgtaatc agaaaatgcc
       61 atgtggaaac gagcactgct gggttaaatt ccagctactc ccaacttgtt ccttgctgct
      121 cgagccctga gctcgctgct cctaggactc tgtgtgcagt ctgatttgat ttctgagccc
      181 agctaaggga aagagttaag cttgttctcc ctttctcgtt ggcagaaagt ttgcagttta
      241 aaattacata ctgactctgg tgtagagaca caagaaatta tagagcagac actgtccagg
      301 acaacgtata atttaaaatg tactaaagaa tgtataccac atggcaaagt aagtgaagtg
      361 cttcttcaaa tataagtgtt ttgcatagaa aggctgtaat tatccactcc tagggaaatg
      421 tttgcattca ttctaaatca atatttacta ttcatctctt gtgttcaaca aaacaaggat
      481 ttaacatttt tttgttttaa tgaggtacta agactacaat aatactacaa tgtaattgtc
      541 ttgatacaaa atattgctaa attgcgttgc tatttcggga gcagggggtg tccctgttta
      601 gatgttactg cagtaacaca caattcaaa
//
LOCUS       KCLJ01000489             445 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 55386cal ultra-conserved element locus
            uce-2172, sequence.
ACCESSION   KCLJ01000489
VERSION     KCLJ01000489.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 445)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 445)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..445
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="55386cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>445
                     /note="ultra-conserved element locus uce-2172"
BASE COUNT          135 a           77 c          117 g          116 t
ORIGIN      
        1 tttttataca aaggccccgc gcagaatgac atttgggcag gcaggctgtt tctgcggaac
       61 agcgagagcc aaaaggcctt gtgtcacccg gttatgtaag acacaatcgc gcctcaaaat
      121 gcacaatgaa tcgggaagga tttatgtaat taattgacca gtcttaacct gttatcgtga
      181 tgtaaggaat ttggaactca ttaatttggg ccctgacaga tttcatatta gagctggcaa
      241 atatggattg agcctcttat tcttgtagca gctggaattt ccatgacagt gaggattagt
      301 gaagaagacc tattgctcaa gtcaaactgc ctcttttgta atcagcagcc ctgctctgca
      361 ttaaaggggt aatgggaaag ggaaaaaaaa tagagaaatg tattcatgga tggagcagag
      421 caggggaggg ggaagaggga tttat
//
LOCUS       KCLJ01000490             505 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 55604cal ultra-conserved element locus
            uce-6391, sequence.
ACCESSION   KCLJ01000490
VERSION     KCLJ01000490.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 505)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 505)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..505
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="55604cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>505
                     /note="ultra-conserved element locus uce-6391"
BASE COUNT          163 a           86 c           89 g          167 t
ORIGIN      
        1 agggatattt atttctcagg ttattttttc tatgagcagg caaatcccaa tccaaatgtc
       61 ctttgatgta ctgtacttaa tagcctggtg actccttgga ttagactgat cgagccagtg
      121 atgaataggg taagtatagt taacagccat tcttaaacaa ctttgagtgt cattaatttt
      181 gttataggac agattaatct gaaatgtcag gacttgctgt actagaccta aaattgtatt
      241 ttcaaaccaa ttttaacaga ttgtatttca ctcttgacac aaaattcatt tactcgcctt
      301 agattgcagc ttttattgta attgtatcaa attaaatcag ggcattagaa ccacagaaaa
      361 ctaagatagg agggtagttg cactactttc tattttgctt ttaatgcagt tttctcctca
      421 aaacaagccc aaatacatgg acattgctgc aggttaagaa gagaaacttt tgaaatcata
      481 tgtaaatcat agccagacag aggac
//
LOCUS       KCLJ01000491             610 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 55711cal ultra-conserved element locus
            uce-4742, sequence.
ACCESSION   KCLJ01000491
VERSION     KCLJ01000491.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 610)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 610)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..610
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="55711cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>610
                     /note="ultra-conserved element locus uce-4742"
BASE COUNT          195 a          101 c          108 g          206 t
ORIGIN      
        1 cacgaatact tccatcagaa accaatccac tctttcgtgt agaaacactg aggaaagtat
       61 tgtcaaattt ctgaaaatac agaccaatta gtgagattta atttagatat ttgtgactga
      121 ctatgtatca tgagagctga tttatcacta tattcttgcc ttatttgcga gactcctact
      181 tattgaaata ttactgaaga atctagcttt ccccacaaat tacacatttt ttgcataaat
      241 gtgcctaatt acctgaattc agttttgatt agcagtgtta attgatgcag ctgtggatgg
      301 gctctgttta cctaaattac catgtgcaaa cagcaatacg tttgaaagtg aatatgctaa
      361 actgaaaata ctaattagct aagacagatt gttattcaag tcacatctca gagcttttta
      421 atgaaaccct gaatgtgtca gggctttatg atattcagac agaaatgtct atattacata
      481 tgaattctaa atttaattca agggaacaga tgggatgtcg accagggttc ttctccatcg
      541 cttccagtat taatgtgaat attttactct actggataca tttttgagtg tgtgtatgtg
      601 agagagaaag
//
LOCUS       KCLJ01000492             390 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 55812cal ultra-conserved element locus
            uce-5664, sequence.
ACCESSION   KCLJ01000492
VERSION     KCLJ01000492.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 390)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 390)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..390
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="55812cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>390
                     /note="ultra-conserved element locus uce-5664"
BASE COUNT          135 a           73 c           77 g          105 t
ORIGIN      
        1 aaaagacatt cagctctcat cctctgaaat tctctgaaat tcccagtggg ttaaaggttt
       61 cagagggtga ggaaagataa aggtctactt ctatgtgtat tatccattaa gaaagtgcaa
      121 gagaggaaac tttgaatttg gagaacaaac agtaatgagt ccaacatttt acatcttcaa
      181 agagcaaagc agggtctgcg agcaattaaa gttctgggac attaatatct tctgaccctg
      241 cggaaaaggg caatcaaatt ccaatcacgt ctaagaaaca tctggacaaa tttgagcaaa
      301 tgatttttca accctccata tatttcttta aattacactg tcatcggagg caagccacgt
      361 cccagagcat gaaataaatg agagctgttt
//
LOCUS       KCLJ01000493             726 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 55918cal ultra-conserved element locus
            uce-77, sequence.
ACCESSION   KCLJ01000493
VERSION     KCLJ01000493.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 726)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 726)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..726
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="55918cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>726
                     /note="ultra-conserved element locus uce-77"
BASE COUNT          256 a          160 c          108 g          202 t
ORIGIN      
        1 actaattttt gagccaaatt atgtaaatct atgttagtag gtacatacac tacggtttaa
       61 aataaacttg acacgctttt ataacacctt gcaatatttt taatatatga ctaccaatgt
      121 tcttgcagaa cttacctgca gtcagaattc ataaaaattt tgatgagcag caatctactt
      181 gtctactcta tatttgacaa catagcacag tctactttca cattaaatca gcatctaaac
      241 caccagtgtg tactatcact ccacagtaaa ctacatatta caaagaaaaa aggtgcaaaa
      301 ttacctctgg atgagcctag cctggaaagt gatgagcgcc gaaaggatgg ataaccaaag
      361 taactaatat cttctgaaaa catagcatca gcatcaataa tgacacttgg gtgagcagaa
      421 tgtatgtcag catccagaag agacataaga tcctctataa gaggagacaa gggtcttaag
      481 tgaataatca gctacttaaa acatcagcta gagagaccat caactaaact cctatctatt
      541 aattgaattt ctgctcttca gattcaccag tgcaaactca tgtgcctcct atgcaaccac
      601 atttacaatc aagcttggtg aaagccagct tccctgcaag aactgctctg tcacttacct
      661 aactacattt cccaaacaag actttcccaa aactcccaga aattcaaact tttgactgtc
      721 acttga
//
LOCUS       KCLJ01000494             513 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 56027cal ultra-conserved element locus
            uce-401, sequence.
ACCESSION   KCLJ01000494
VERSION     KCLJ01000494.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 513)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 513)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..513
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="56027cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>513
                     /note="ultra-conserved element locus uce-401"
BASE COUNT          152 a           89 c          130 g          142 t
ORIGIN      
        1 aaaaaagcag aggtattttt aagacgctga tttttaaaaa tgctgcccac ccttttaacc
       61 ctccaagata tcagataagt ttctctttcc tgcggggaga tgaagtggct gtcattatct
      121 ggaagggctg tatcatatcg gaatctgccg gcgcaggtca gcgagtccgg gctgttctgg
      181 gcccggctcc ggcactgaat tacatttcct gggcacaaag gctgcagaat gggtgggtgc
      241 tttgtcattt aaactgcata aagaggcaga aattgatttt tattgtggat cttcatatct
      301 aataaagctc tgaggggctc ttttcttctc cgattgaatg gccattgaat gctttcaatc
      361 tagttctgtg tttcatgcct aaactgaata gtggcaggag gaaaatagat ggggggaaga
      421 gaggccaagt cactttccag attgaaaagg gggaaataaa ttaaaataaa ataaagtaaa
      481 aatgaatcag agccatttaa gtggaaaggg gaa
//
LOCUS       KCLJ01000495             568 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 56138cal ultra-conserved element locus
            uce-4033, sequence.
ACCESSION   KCLJ01000495
VERSION     KCLJ01000495.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 568)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 568)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..568
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="56138cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>568
                     /note="ultra-conserved element locus uce-4033"
BASE COUNT          174 a          106 c          138 g          150 t
ORIGIN      
        1 gaaacctcag cttcttttca ttttctctag tttgggaaca tacatttaag ttcccctcct
       61 tttagttttt atagcaaata aaagctgcaa aggtgaggtg gggagtggtg tgaattaaaa
      121 caaactaaac cagagtccag gcacaatcac cttgtgtctg ggaacgacaa gggctttcct
      181 atcaaaggaa actgaaggtc acactttccc tcattgatct tgcaatgttt gttaattact
      241 ctgtcactga tgtggcgaag gataattaaa cagctctgtt tatatcttat atgcataatt
      301 atgtgcgctg ccactgaact cgtgaagact agagaatgtg cctctccaga aggggaacgg
      361 acagacggag atgagtttca gctgcattat taacaggagg aggaaaacat gcgcacacac
      421 aaaaggagga aagtttgatg gattcacaaa gtgctgagat caggggaggg gtgcgtgcag
      481 gtggagcaga ttaggggaag atctttcaat tacagatcca gcccagctga gtgacaaatg
      541 gagagaattc aattcaccca aagctttt
//
LOCUS       KCLJ01000496             409 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 56357cal ultra-conserved element locus
            uce-5541, sequence.
ACCESSION   KCLJ01000496
VERSION     KCLJ01000496.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 409)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 409)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..409
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="56357cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>409
                     /note="ultra-conserved element locus uce-5541"
BASE COUNT          144 a           76 c           63 g          126 t
ORIGIN      
        1 acatgatgac ttcatatgca agctttgaca cacaagagaa cgccatgacc taatgcttca
       61 aagtttctaa tcttgctttg tacaatacac ttttcatgtt gctgcatttc atcaaattca
      121 tggaggtagt tatatgtgta aaaaaattac cataaaagta acatgttgta ttataataat
      181 acatattaag tgtgcaaaat gccgacagat ttgtgttgac cctttacagt tgaacacaac
      241 acagattcaa cctaatctaa ctctgtaaac ctttaaattg atacattaga atgatagata
      301 agcaaccaca taatacaagg ctatgatttc atcaaaggat tagggtgaca taaagcactc
      361 aagctccact ctcgtggttt tgttaccaga acctcaagat ggaattttc
//
LOCUS       KCLJ01000497             465 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 56460cal ultra-conserved element locus
            uce-4164, sequence.
ACCESSION   KCLJ01000497
VERSION     KCLJ01000497.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 465)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 465)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..465
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="56460cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>465
                     /note="ultra-conserved element locus uce-4164"
BASE COUNT          154 a           83 c           88 g          140 t
ORIGIN      
        1 tccctttatt tcagttacaa agttgatttt tagattagaa aaatgtagca aaaggcattg
       61 acaatattag tttaaaaacc tcttattatc tggaagtaca tggaaaacgg ctcagctgaa
      121 cttgcatttt gttttagatg cttaatgatt acaaagaaga taatttatga ctgacatact
      181 tcttgtgcca agagaagagt tgaaagaacc tccagttacc tccattagac tgatagagaa
      241 gtctaaaaga gcattacact ctgcagtgcc atctgtcaaa atacgtaagt gaaataatag
      301 tagcaagctg tcacctattg ctcagtgata agagttttag acaaatcaaa acttctatgc
      361 cagaaatcca ttttgttatg tgatcctttc agggaagtgg gggtccaaag gggaactcca
      421 ggtaatcctg agtctcctta atttgcaatt cctctgacgc cgaca
//
LOCUS       KCLJ01000498             499 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 56570cal ultra-conserved element locus
            uce-3057, sequence.
ACCESSION   KCLJ01000498
VERSION     KCLJ01000498.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 499)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 499)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..499
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="56570cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>499
                     /note="ultra-conserved element locus uce-3057"
BASE COUNT          174 a           84 c           63 g          178 t
ORIGIN      
        1 ttctgttact ctgcattttc tctaagtcta aaaatcggta gcatgtatga caggtccacc
       61 tcatttttct taatgatgtt tttattattc tttcactcaa ttaaaacaga aatggatatt
      121 gcatcttctg actgtataat tgttattgta atctgttttc gatcactgct tgggaaatgg
      181 gtccaaaaca acataaacta tccacagcct cagaatacaa gtcattttct tttactacga
      241 tacttaaaga gacatctatc atgttgctcc gctaacatgt ttgtattaaa gaagttattt
      301 gtaagttggg aaaagacatt atgaaaatca ccttttactc caaagtattg tataactcat
      361 aatttataac tacatttctt aataaccatt caaaataata aggctggaaa ttgtgcacat
      421 ctaattttaa tatataaata atggaaatgc acataaacca aaatatgctc aaaatatgaa
      481 tttatattac tctccaaag
//
LOCUS       KCLJ01000499             634 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 56676cal ultra-conserved element locus
            uce-3259, sequence.
ACCESSION   KCLJ01000499
VERSION     KCLJ01000499.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 634)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 634)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..634
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="56676cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>634
                     /note="ultra-conserved element locus uce-3259"
BASE COUNT          207 a          122 c          143 g          162 t
ORIGIN      
        1 aaaactcaga aatctattat cagtgtgagc atgtgcttat tgatcaggtt acctgtgtgt
       61 gcctaattgt accagcacat gcacagacac ggaaatattc acacacgtgt gcatagatac
      121 aggtgggtta ggggtgtgtg tatgataaag gctttacaaa actgcacata aataaaaaga
      181 atggactttc cctgtgaaac gtgagcacag aaacgctcac aagtggccaa gagctgctaa
      241 ataattaatc aatagagcag tgtggcagtt tgaaatgtaa atgtgatgga tgaaggtgtg
      301 atgcttgtca tcaagcagaa aatgatgtga ctggaatgga taacccacag tacctgctaa
      361 ctggcaagag cttggacaca aagataaagt aaagccatca gaaagcagac ctggcaaccc
      421 ctaattcttg cctttgaccc acaattcact ttcatgtctc tgtcccagaa gagatgttta
      481 aaaaaatgat gaagagagat cttggggtgg gaaaggggtg aaaaaaacca tctgaagaaa
      541 tgctacctga caaggctgca ggctacgttc ttgagaacac ctttcttttc tttatgttct
      601 ccttctcccg ttaaataaaa atgcggctcc cttc
//
LOCUS       KCLJ01000500             497 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 56780cal ultra-conserved element locus
            uce-426, sequence.
ACCESSION   KCLJ01000500
VERSION     KCLJ01000500.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 497)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 497)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..497
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="56780cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>497
                     /note="ultra-conserved element locus uce-426"
BASE COUNT          132 a           98 c          100 g          167 t
ORIGIN      
        1 aaattaatcc agacatttcc agggcaagtg tggctgacct tttgttcacc agctactgac
       61 cccagggtga atgaacgagc cttgcagaga gaaatgtctg ttgtttggct tcagtccctg
      121 gcatttaaat tgcattccct aatcgaatga aaaggctgtc ctctctatca ggttacagaa
      181 tccatggcaa catttggcct tttatatcca taatgttagc ctttttgttt gcagccaagt
      241 agagacacct ggagcaatgt taacattaac cgctttagca ttaatagctt cattatagaa
      301 gaatttctga tcagatagct gttacttttg ttatattgct tcagcttgta ttgttttcat
      361 ttttgatctc cctgcttggc aacccggcaa tgatttgcaa atttttttgt cttgattaat
      421 taagcaatat aattatcagg aactgtgctg cagtctttgc ccgacaaagc ttgggaggga
      481 agacaatagt aagtctg
//
LOCUS       KCLJ01000501             520 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 56887cal ultra-conserved element locus
            uce-4364, sequence.
ACCESSION   KCLJ01000501
VERSION     KCLJ01000501.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 520)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 520)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..520
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="56887cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>520
                     /note="ultra-conserved element locus uce-4364"
BASE COUNT          167 a           93 c          106 g          154 t
ORIGIN      
        1 atatctttgt tggcataacc gctggtgaat taaaagtcca cattcagtga gtaagcttaa
       61 ttatccattt aaccaaatct cttattgggg aaggaaaagt gaagagtggg ataaagatgc
      121 aggtgggaag aggggcagaa gcgaggctgt agtattcagt tacatgtgaa atgatttgta
      181 attctgagta atcacttagg acaagccctt gcaccatttt atctatacat gactctaggc
      241 caaagtcaat actcatagta aaataatgag atgaagctaa ctgagcccct ttattaatgc
      301 tccaaggagc aaatccgatg cttaagcttc tcccatggaa agtatccact tctttctgaa
      361 atgaacaagt aggtcatgat ggccggtagt aactaggatt cttacctcca aaaaaacatg
      421 gaaaatttcc tttcttattt gtgcaccatg tcatgctttg cccagctgca catgaagcta
      481 tataaatttt gcattatgtg tagattcatt agagaaatct
//
LOCUS       KCLJ01000502             875 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 56996cal ultra-conserved element locus
            uce-1463, sequence.
ACCESSION   KCLJ01000502
VERSION     KCLJ01000502.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 875)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 875)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..875
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="56996cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>875
                     /note="ultra-conserved element locus uce-1463"
BASE COUNT          233 a          167 c          169 g          306 t
ORIGIN      
        1 tattctgaat ttctgctaga gatataaatg ctgcgtgtgg cagtttcttc aggaggagac
       61 gtttactttt gtaataacat tgacaacatt ttatagttgg tcaatgtttc gaaggggcat
      121 ttgttgatat ctaatttaca tagcctgcaa ggtgaaattc agttatattt tatattccaa
      181 aggtatgctc ttttgttcat tccagccctg cctttacatc tcccttttat ttggctttcc
      241 tctcctctct ttttcttttc attttcctct catttttcac catgatgtag ttaatttttt
      301 tttcagctca tgctacactt tgtcttgtct attgctatgt gacagaaaag ccagagacat
      361 tccatgtctg gcagtacacc tccagggaca tcttttgaac tctcataatt tgtatttatt
      421 gccacccact ttgtaagttc acagtttaat ttgccagcag tggcagtgtt aggccgacac
      481 agtaaaacaa gataacgtta aaatgtcaga acgagagggg gcatgaatga tgcattactc
      541 actgctagaa cttgcacttg tcatgccttt ccaccaaagt gatgttaact accttttgag
      601 agccttatct gactggtatt actcagaaat aggatcatta gttcactgct ctgattagaa
      661 ggttgctatg gttgattaac tcttctggaa ctgggatcac ggtgggaaca taacatgaat
      721 cacactggat tatgcatcta gaactaattt tataaatagt tgtttacaat tcactagtgg
      781 gctgacagga atgagtgcag agggaaaaat ggagcacatt ttaatggaaa cattcaaggt
      841 agatttcggt tgagctgctt ctccttcagc acagt
//
LOCUS       KCLJ01000503             842 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 57108cal ultra-conserved element locus
            uce-82, sequence.
ACCESSION   KCLJ01000503
VERSION     KCLJ01000503.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 842)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 842)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..842
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="57108cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>842
                     /note="ultra-conserved element locus uce-82"
BASE COUNT          224 a          168 c          144 g          306 t
ORIGIN      
        1 cactggcctt gtcttttctt gctcaaggaa acttttgaga gtggattttt ggcttgctct
       61 ctttccagca taaagcacct ctgtatttcc caaaagtgaa ttggagacag atctgcttgc
      121 acagggaaat aaaatagttt tccctgcact attttcttgg gagtatgcaa aaatcccatg
      181 tgcttttttt atgaactgga cccttctctt ttatagcagg tagtattcat gcttattaca
      241 atgccacatt atggccttag acacttttta tgtccctcca acatagcacc ctagagaaag
      301 atgcttcact aagcaagaac cagtaaactt gctacagaat cagcggaata cttttcacaa
      361 aagtgcataa acttctgttc ttaaacattg tcatccttca ccttaacaag cacttccact
      421 ggtttctatg ccttgttagg tctatcatct ttttaattaa tagtgttttt acgaagccgt
      481 ctgaactgtg tcatttccat tatcagaaaa ccattgccat taatgaataa ttttcatttc
      541 tgatccttga tatcatgcta gttgatctcc tgtttccatg ccgccaaatg atagcatcgt
      601 tttctgccca cgatcaaatt taatttggac tctgattata ttatgctgtt gcgactgaag
      661 tgtcaatttt tgtcaggcaa ttaggagcta taacctgtga agttaagttt gataggcatt
      721 gtaattggat tgttacagta atagcttgga acattccctt tttttcttgc ttctttgatt
      781 cttgatgcat actttagttg tgagaacaaa ggcattttgt tattatgcaa ccataggatg
      841 tt
//
LOCUS       KCLJ01000504             493 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 57220cal ultra-conserved element locus
            uce-6459, sequence.
ACCESSION   KCLJ01000504
VERSION     KCLJ01000504.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 493)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 493)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..493
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="57220cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>493
                     /note="ultra-conserved element locus uce-6459"
BASE COUNT          155 a           89 c           93 g          156 t
ORIGIN      
        1 ctaggcagtc atttgttatg gtacttaaag aggaaaagaa acactcttct aacagtgaca
       61 tctgcaaaat tcttcctgta gctaatttct gtaatagaca catatcatgt tcgtggtctg
      121 ttgtcagtca aattaagagc atgttatata atgatctaga ctgcaaaaca tcttgatttg
      181 cttcttttag tttatgtcaa ttgtgtgcat aatacttgaa ggttaatagt gtgacaatga
      241 tggaccaaac catgcaaaga atatctttct tacagtggac aatttccctg tgaaatggat
      301 tggaaagaat gtgatagtgt acagaagact atattaaaat tatggccctt caatctgact
      361 tgctcaaagg caccattaaa attagaaacc attgtcttga aaactgctgc acacatgctc
      421 aaacttggct atagctcact tgtaggctct gcttgaattc ttgcactggg aatgctgcca
      481 agcacagctc gta
//
LOCUS       KCLJ01000505             599 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 57325cal ultra-conserved element locus
            uce-4643, sequence.
ACCESSION   KCLJ01000505
VERSION     KCLJ01000505.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 599)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 599)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..599
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="57325cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>599
                     /note="ultra-conserved element locus uce-4643"
BASE COUNT          202 a           86 c          100 g          211 t
ORIGIN      
        1 aagaggttta catattcctt atgatacatg tatgataaat taagcactct tttctggacc
       61 cctttaaatg gaaggaattg aaaacacaat aatgatataa ttaattacgg tcttacacgt
      121 gcagaaaaat tacacctttt tcgattagtg tgaaatataa gtgtcaaatc agtaataaaa
      181 tcctgatcaa taaaacaata ataacgatgt tgttaaaagc agacttagga aggtgttcat
      241 ggcaacatgt tttaggggtt agaaaccctt ttaaaataaa cggatttcat ctttacactg
      301 tgtcatctaa atcattacaa tgtttgtgta tacaattatc atcagacgat aaattgcagc
      361 tattgaatgg attaagtttg aactgtttga cctcataaat ctgggtttgt catagcttca
      421 gcaaatgctt gtgtaacaat cagttgatta catggcagag cagatgtatg tatgttaact
      481 ggaaaatatg aaaggatcag ggtaattcaa agttcattgg aagaagttta taaatgtctg
      541 acaatatcat gttctccata tacctttctt ttttttctat tctttttttc tcctgtttt
//
LOCUS       KCLJ01000506             697 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 57433cal ultra-conserved element locus
            uce-1055, sequence.
ACCESSION   KCLJ01000506
VERSION     KCLJ01000506.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 697)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 697)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..697
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="57433cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>697
                     /note="ultra-conserved element locus uce-1055"
BASE COUNT          233 a          120 c          116 g          228 t
ORIGIN      
        1 aaagcatgaa aattttcttc tagcattgtc tgacatcact tgcccacgac aacatctatc
       61 tctgaaactg agacctttat tcaggaggtt aatgtgaggt aggaactcca ttcagtgtta
      121 ttttggctta agggcataat gtcacaattt ggtgcatcct ttaatgactt ttttctaaag
      181 gcagcttaca gcttagactt agttcagcga atttccttgc aaggtccttg gaaaatggga
      241 atgggtaggg agtacaattg attgtgtggc caaatttttt gttcatgtct gcttactgat
      301 ttttgttcat ttcacaaata aacaaggcat gaatacatca acccacaaac cataaacaat
      361 aaagaacttc atcctgtaag tttgctacgg ccagcagttt gtggctggat ctgctatttg
      421 tcataagata aatgataaag tgattgccat ttgtcactga atacacaaga gaagtattca
      481 gctgtgaatc acacaaatgc atgcggcagt aaatactgct ttcttattag taacttatgt
      541 ctgcttaact aaaaaattat tttatctata caattttata tgttaacaat tttataacaa
      601 tacgcacata cacataaaac atctacagta taaaaatata aaatttacta caattcattg
      661 agcaggaaaa gacacttcta tatgaaaagg tatttta
//
LOCUS       KCLJ01000507             605 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 57543cal ultra-conserved element locus
            uce-5065, sequence.
ACCESSION   KCLJ01000507
VERSION     KCLJ01000507.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 605)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 605)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..605
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="57543cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>605
                     /note="ultra-conserved element locus uce-5065"
BASE COUNT          144 a          162 c          136 g          163 t
ORIGIN      
        1 ctgccatgtg catgcacaaa cagggacttg gtgcacacca ctgggagcag cagtcttgta
       61 aataatggcc aatcagtatc tcatctcctt taattccctt gcaacgcgat gattctgcaa
      121 gggtgggtcg gtcgtagctg caggtgctcc cggacggggg aggagcacaa aaatgaagtt
      181 gtttgcggct tttgattcca tccctggaat tatttacagc tgcaggcaat attaaactat
      241 gtagagcaag tgtcctcatt tacatgctaa ttcatttata ccctctggat tgatttctcc
      301 aattcatttt cagcccacta actcttctga tatgaattat attatcacct ccagaacagc
      361 agcagggaaa tgtgacgaag ccaccccagc tcttctgatc tctaattgcc ctcgctgttc
      421 ggagccggcg tggccagctg cagctttgcc tcctggctac cagcacccag cttccttcca
      481 tctcctggag acaaaccagc agtgtggctc ggagaggcca tcacttgcaa gaggaacttt
      541 ggaaatcatt cctctctctg cccaggagga ggaaccacct catttcagag tccatctgtg
      601 ttctg
//
LOCUS       KCLJ01000508             504 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 57655cal ultra-conserved element locus
            uce-3152, sequence.
ACCESSION   KCLJ01000508
VERSION     KCLJ01000508.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 504)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 504)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..504
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="57655cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>504
                     /note="ultra-conserved element locus uce-3152"
BASE COUNT          136 a          106 c          131 g          131 t
ORIGIN      
        1 gcatttgaat taaaagccta agagaggtct ccgacggctg ctcggggctg attagcagga
       61 ggcgcgcgtg gcaccgggag cgaatttcgc agcgcgcggc aaagcaaaag gagccaggag
      121 ccttcccgtg acagccagca cggaggtcat tctggcaacc attttctgcc tagggttaaa
      181 cgtcctcgcc ctgtcactgt atcaaggtta tctattattg gcagtgacag gtgaaaatta
      241 atctcctaat tatttcttgc tgcgtaatct gcactgaagg agtaacgtaa aaggattaca
      301 gtacaccctc tacggaaggc tttgctagaa agccaatcat ccagggagat agaggggatg
      361 tgggaaagag atatttatga cggatttcca accattttga aggcggaatg cgctgtaact
      421 ttataaccga cagctctgga gtgaggatat tcttgcaggt atcttaatag cctcttctta
      481 ttgttgataa gatttatatc catt
//
LOCUS       KCLJ01000509             782 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 57762cal ultra-conserved element locus
            uce-1150, sequence.
ACCESSION   KCLJ01000509
VERSION     KCLJ01000509.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 782)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 782)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..782
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="57762cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>782
                     /note="ultra-conserved element locus uce-1150"
BASE COUNT          255 a          131 c          181 g          215 t
ORIGIN      
        1 aataatgcat acgtagcaat aggggacttt ggatagaatt ctttcagctc tcttaaaccc
       61 aatctaaggt taatttataa taaataatta tagttttagc agtaaaatga gaccctgtga
      121 agctgagagc agaaacagtt ttaaaagctg aacgtgctca caggtaatag ctacaactgt
      181 gtagatcaga catcgacact gaaagaagca taaattcata taattaattt tgccattgta
      241 aaaatcattt gctaaaattt gcattattaa cattatcaag ttgctggttg gtgagacatc
      301 agacatgacg agtgagaagg gcagcttagg gagaattggg ctttaaaccc tcagcagatc
      361 ggagttagga tcaaaggcgc ttgttttatg tggctgtgtg acactttgaa gtcttgactg
      421 cacctacagc actcatttca tcaggttcac tggtgtctta atagcagatc aataagtttc
      481 aaagtcggag agttaatttg atactagtgc tgatgtggtc gtgctgggga agcagagaga
      541 ggcaggcaga gaaagcaagc ctattaaccg tcctgatagg gagaggtgtg tgccagtgtt
      601 gatgggtacc tgtaaaaacc caaactgtaa atattgacct taaatatgaa agctgcatgt
      661 actaaaggca tggagttgtt tacactgttg aaatagattg tatgcaagaa gcaccgttct
      721 tcagccaagc agtgcgaagt tctaagaaag ttcccccagt aaggagaata aatgcacact
      781 cc
//
LOCUS       KCLJ01000510             733 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 57870cal ultra-conserved element locus
            uce-664, sequence.
ACCESSION   KCLJ01000510
VERSION     KCLJ01000510.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 733)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 733)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..733
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="57870cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>733
                     /note="ultra-conserved element locus uce-664"
BASE COUNT          231 a          141 c          129 g          232 t
ORIGIN      
        1 gtggggtctc aaagccacag tggctgggtg tggaacagat aatgattatc atagaataag
       61 aaaatgaaga gttacatggc attcgaaaac gagttttctc taatctttct taacctttgc
      121 tctttctgta agtagtgtcc tcagaggagt gtacctcaat tcagaagcgg atactgcagt
      181 ataatggttc tcatttttca gttgggttat tacgattcat ttggagtttg atcctatgat
      241 atttaatctc aacattatat gacatcatta aagacatctt atattgtttt tgcctatggt
      301 tagaaattat gtctgcttaa tcaattccat tatgcattca accatccatg acacatcaaa
      361 ggctaataag atttttttaa aactttgctt gcttaaaatg atttccctcc agatcaagat
      421 gcagagcaca aaatattaat cagtttaaat aaatatcaag actacccaaa taatatgaat
      481 aattggcaca gtgcagtgcc tactgcccag ttcccaacag ctggtcacac tggcacatgg
      541 caccatctca acagtctttg agataatgac tttggcatct gccgatgagc gtttgctact
      601 gcccacagaa tttacaactc acaagtggga aacagaggct ccaacagaac ttttttatgc
      661 aaggtctttg aaatttatta atgtaatgca aacacaagcc ttccaaccca ttaaattgtt
      721 gatgttatgc gaa
//
LOCUS       KCLJ01000511             669 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 57983cal ultra-conserved element locus
            uce-5635, sequence.
ACCESSION   KCLJ01000511
VERSION     KCLJ01000511.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 669)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 669)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..669
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="57983cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>669
                     /note="ultra-conserved element locus uce-5635"
BASE COUNT          238 a          135 c          109 g          187 t
ORIGIN      
        1 gatcccagta agtataaaca ttctgatgaa gcaaaatgat ttagagttac aattaaaaaa
       61 actggagtaa gcaaaaagat acataggaaa cataataata atcctatccc aaaagattgt
      121 gctatccgag gggatctaga atattaatta gtaagttgtt gcaaacctat aaaaaatcat
      181 cctataatta ctctgaaaag ttgcaatttc aaagctacac tgcagaatag catactggat
      241 taattatgcc agactgcagc aataaccttg aattaaagct gcaaccttct atttttaaga
      301 aacaattgcc tttctggttg atgaaacctg tcgtcccatc aggtaacaga cgtgaccagg
      361 aaagagaaaa gcaataatga gtcaatccaa gctgtttgat acatttcaaa tcttcctccc
      421 acagagtgta gctgccacaa gctacatcac cagtctggtt cttgaaaact cgatctcctc
      481 cctgatgagt gaatatgtcc cagacattag ggccctttcc atctgcattc cagccttctg
      541 cttgaaaaac aaaacttggt catttttgac atcaaaagac atatgttgca agtaaataat
      601 tatcacaaag taggtgcaaa tcccatgggc aaattgagaa gtattctcta cccactcctt
      661 atattattt
//
LOCUS       KCLJ01000512             522 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 58090cal ultra-conserved element locus
            uce-3308, sequence.
ACCESSION   KCLJ01000512
VERSION     KCLJ01000512.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 522)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 522)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..522
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="58090cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>522
                     /note="ultra-conserved element locus uce-3308"
BASE COUNT          144 a          135 c           99 g          144 t
ORIGIN      
        1 ttttttgtag ccatgtttgg caccataccc ctcccctggc caacctatta tttcacaaat
       61 ggatgctttc tgcagcccgt aaagaaaaag aacccaggat ctttaaccag ttcccttgtg
      121 gttttttgtt ggtaatattt ctgggtacaa agggttacac tttaattgag ctgtcagcat
      181 ctccaacaat cctataaaac tccgattatg cacggcgggg ttagtgacac acttgttatt
      241 gtggatgccc tatttgctaa acccgggaca ggtcacctca cccaggcgac cttcctgtca
      301 ttagcctcgt ctattcctac ctcaccgctg tgaaaatcac acaaggaaag gcttcaaagc
      361 ccttgccagg actgaattcg accaggagct aatcacccac aaatccagct caaatggcaa
      421 taattggcta aactgctcac ctctccagag ctcagcagta atttgggata ataaagaaaa
      481 gaattattca gctaactgcc ctgaaatgta tgctttgtga cc
//
LOCUS       KCLJ01000513             514 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 58199cal ultra-conserved element locus
            uce-478, sequence.
ACCESSION   KCLJ01000513
VERSION     KCLJ01000513.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 514)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 514)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..514
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="58199cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>514
                     /note="ultra-conserved element locus uce-478"
BASE COUNT          145 a           97 c           87 g          185 t
ORIGIN      
        1 aaaaccttca ttcttcttat cacagttagc ctcaactttc taacagttgt aattgtccac
       61 agaaaacatt tcaagataaa tgcattatca ggttttgaaa ttttcttatt tttgtaaata
      121 ctaagaccta aaataagggc tatattgtgg attaagtgaa atatctcaag gctgtgcttt
      181 tctgataact gaacctgaag tgacctttct cagacacaat tacagagctg tatgtttttc
      241 ctttaatttc atcaggggtt taattagtat acaaataaaa cttcccttat cttcctttct
      301 acctaattgg cttgtctttg cttatatatg aagaatgtga aaatgggctg taattaggat
      361 gaccgtgtta accttttttt ctcaaatgta ctgttgccta aaggcctcaa agcctaaaac
      421 cagtgctttg gattattgct ttgcaatcac tatggctctc ccataggttt tctcatgagc
      481 agaagggctt tgggtgctgc aggttcccac tgct
//
LOCUS       KCLJ01000514             345 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 58309cal ultra-conserved element locus
            uce-1511, sequence.
ACCESSION   KCLJ01000514
VERSION     KCLJ01000514.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 345)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 345)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..345
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="58309cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>345
                     /note="ultra-conserved element locus uce-1511"
BASE COUNT          116 a           66 c           50 g          113 t
ORIGIN      
        1 tccactgttt aatatcttgc tgtcattaag agacaggata ataactataa ataatgtaaa
       61 aaatgctcat ttaacagcag ttgcaataat gctcatcaag catttccttt tgagcagcat
      121 atggaaacca tagagtactg aaagagttaa tgtgtttaga attcagtttc catcatactt
      181 gggtgactat ctctttaaat aatttaaatc ctctccatca actacaaagc tgttttgaag
      241 ccatttagct ttgttcttta catgtgttct aattaagaaa tgaccttgtc atcacacaca
      301 ccagaaatcc tggattattt cctgcagcaa aaatctacga agcca
//
LOCUS       KCLJ01000515             800 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 58421cal ultra-conserved element locus
            uce-3451, sequence.
ACCESSION   KCLJ01000515
VERSION     KCLJ01000515.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 800)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 800)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..800
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="58421cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>800
                     /note="ultra-conserved element locus uce-3451"
BASE COUNT          263 a          152 c          187 g          198 t
ORIGIN      
        1 tgccaagaac tgccatctgc cacctacaag cgcaggtgcc agggagtctc ctctgcacac
       61 aaagcataat aatataacac aaaggaccaa tgtgcactaa taattgctaa acacacagaa
      121 agaggggcca gaacattttt atgaaagttt acttagtctg tggagatttg catacagatg
      181 gctgggtcag ggtgctgtgt atgccgcctg ggccactgtg gggtagggct gccttcaagc
      241 agcctttata agcacacacg gcttttacta tagcatagtg ttgtggagag acctcattct
      301 gcacacactg aatagtcatt caagtagctt gctttgaaat gagaaaagac cttggatggg
      361 gggaaaaaaa gcaaattctt ttctttgtga gacagaggag gagtgttggg aaagaggcca
      421 gaggacttaa agaatgtggg ttagcaacca ggaattagag gaaagtttct gtggagacac
      481 acaattagat atgtggcatt cacccctctc cttctagtgg gcaacaagag caagcacatt
      541 tcaaagggtt catcatctgc atgaaacaag gataggggga agaaaaagca ccctaatttt
      601 taaagtataa agcaaagtgt aactgtctta aaataaaaca aacccaaagg ttaagcagca
      661 agaaatttcc cttccactaa gagcatgaag acacaaaccc tgaatttagt gggtgtcctt
      721 gtgtaaatct gaatgtacat atgtgtgcat acacacggag atgccttctg attattttaa
      781 atttgaaatc attgccataa
//
LOCUS       KCLJ01000516             558 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 58535cal ultra-conserved element locus
            uce-4897, sequence.
ACCESSION   KCLJ01000516
VERSION     KCLJ01000516.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 558)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 558)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..558
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="58535cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>558
                     /note="ultra-conserved element locus uce-4897"
BASE COUNT          187 a          122 c          113 g          136 t
ORIGIN      
        1 ctgcataagg taatcccacc ctggcatctt atgctcccca ggtgactaga ctgacaaaaa
       61 aagccaaaaa aaaggaaaaa aaaatccacc attctatatt tgtaaatatt aacaaaagct
      121 aaacatgggg ttttgctatg gtaagaaaat gccaccctcc ccttctccat aaattgggct
      181 tctaggaagc aatccctccc ccaagaaacg gcttgtgggg agggcaaagc aaccagctgg
      241 gttgtaggag taataaagaa ggagaatcaa tagggcatgc aatggagcca aggtgctgcc
      301 atttatcacg ccgcttctct gactccaatc attcatcatg ctcaatgagg cagcaaatag
      361 gaaaatgact atttgtatca aacacatctg cactcatcca ctgaggtatt ttattcccat
      421 taactctgaa agtaaaatac gcagagtttt ctagcttctt tcagctcagg ttggcagaag
      481 aaattcacag cacataggaa cacaaatgac tgcatgagtt tgcaaagcat tttggagagg
      541 attttagtga gtccacag
//
LOCUS       KCLJ01000517             332 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 58644cal ultra-conserved element locus
            uce-7429, sequence.
ACCESSION   KCLJ01000517
VERSION     KCLJ01000517.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 332)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 332)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..332
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="58644cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>332
                     /note="ultra-conserved element locus uce-7429"
BASE COUNT          130 a           60 c           70 g           72 t
ORIGIN      
        1 aatgaatagc agtgcaatgt gtacacgctt tgtccctccg gcccttcaag tagcccccat
       61 tgaatagact aagttgacac tgcatgacag tgaaacaaca taataaaaaa tacatgagcc
      121 cctgaatagg agcaggcgca taaataaata aaatgggtga ccaaaactgg ataaactgaa
      181 tgacaaaacg gtgaaagggg aacaaaaaga tatttaacac gctagattag cattagaatg
      241 caatctacaa ggcagaacaa ttgatgaata ggtttaccgg ccaagaaaga aatggactaa
      301 atgccctttg aatagatatg ctttttgcaa gg
//
LOCUS       KCLJ01000518             748 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 58746cal ultra-conserved element locus
            uce-6277, sequence.
ACCESSION   KCLJ01000518
VERSION     KCLJ01000518.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 748)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 748)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..748
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="58746cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>748
                     /note="ultra-conserved element locus uce-6277"
BASE COUNT          248 a          148 c          124 g          228 t
ORIGIN      
        1 aaaaatgcat taattcatgc aaaatgagat ctgggatttt gttctattat tttaaacaag
       61 aggaaaattt gatatgaaac ataatcctta aagtcccagg gtccactaca atgcttggac
      121 aaaattcaaa tacattttat ccaaaacatg gcaccagctt ccatcaaaaa attatatgtt
      181 cagtcacaaa tggttattgt aaaatcttta ttaacctaag tgcatataaa aattgtgaat
      241 tcttaataca aagcagtatt tgacttttaa atttcatttt aagcttgccc tgttcacttg
      301 gaatgtgatt acagagtaaa ttaaaaagta atcacatgtg aattacattt cctcatgaat
      361 gtaatgactt caggagactg attaatgtta agcagtgcct gtcctacctc atgcatacct
      421 tcccaggtga gatgtgcaag atagctgccg tgagttgatt taatttcctt tctctgggag
      481 tccagtgaga aatgttgaac agaaaccaat tcagcacgtt cattagatct gtatatgttc
      541 acttcttttg tccacccaag caccacctgc aaaatgctct cggtgtcagc ttatgattgt
      601 gagcaagacc ccagagactt gctcatcctg taccctgcat cccagccagg aaaactcttt
      661 acatttagat agaacaactc agctgctgca cagagcaaca gatacatatg tgtcagcaaa
      721 ttaaagcctg atgaaaaacc ttgtcaat
//
LOCUS       KCLJ01000519             478 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 58856cal ultra-conserved element locus
            uce-2513, sequence.
ACCESSION   KCLJ01000519
VERSION     KCLJ01000519.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 478)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 478)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..478
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="58856cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>478
                     /note="ultra-conserved element locus uce-2513"
BASE COUNT          123 a          103 c           88 g          164 t
ORIGIN      
        1 aaagcttatt tgcctgagcc gttaagattt tttctcacag ttctgcctgt ggcgcctgtc
       61 actagcagtc aaataaggac aattttacca ttctctcctg ctgctctaat tttttttttc
      121 agtgccagta catgtatttg ttattcttta taactccctt tgaagttggg aatccaaggg
      181 gaatctaaaa ccgaccagat gtttctgctg ctggagacac agaagacagc aaggattaag
      241 tttaactgaa acttagttct ctacaaaacc ccattacagt gagaattctt cctgagttag
      301 ttttatttat tatttatatt tgcacttgcc atcctgggta ggtgatacct caagtcatct
      361 ggcctgggag aaaaatggat gatttatcca agtaaatagt gtatcagcag ctgcctgcgt
      421 tgatttccct tatggggttt cagttccatt acactgcata tttcccaccc acactctt
//
LOCUS       KCLJ01000520             479 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 58963cal ultra-conserved element locus
            uce-3606, sequence.
ACCESSION   KCLJ01000520
VERSION     KCLJ01000520.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 479)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 479)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..479
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="58963cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>479
                     /note="ultra-conserved element locus uce-3606"
BASE COUNT          175 a           64 c           79 g          161 t
ORIGIN      
        1 tctgtaactt cattgctatt gagaaggtgt gaaaaagggt cagtaacccc atagtcttct
       61 tataatcagg aatgatcagg aaatgtagaa ctaaatatag agaaaaggga aagttagtga
      121 atatatttgc atatgcaaat tagcttaatt gatactgctt gcctctacag ggatttttca
      181 ttacaaactg gagtgctaca ttgttcagct catattgagt aatttagtaa ctaatgagac
      241 cagtttgcac taatttgcat atgataaatg agcttaattg cagtaaataa cttggaggca
      301 taattactta attttcctgt gttgcatggc ttttaagttc acgtatgaac aactcaagat
      361 aattttgcat atttaaatta gttgctttta aaattcttga acaaaaaaga acacacctta
      421 caatttgaac tgtaaaacaa ttaaaagtat aatgtacata ttttaaaaaa atcttagta
//
LOCUS       KCLJ01000521             805 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 59072cal ultra-conserved element locus
            uce-6953, sequence.
ACCESSION   KCLJ01000521
VERSION     KCLJ01000521.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 805)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 805)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..805
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="59072cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>805
                     /note="ultra-conserved element locus uce-6953"
BASE COUNT          169 a          214 c          219 g          203 t
ORIGIN      
        1 agaagtcagc agagcattca ctgggtacag ggctgtggtg aagctgcctt agcttttcag
       61 taccctcttc tattcctgtg agcttgctgg cctggtacca gagtggtaat tcccttttgg
      121 actattggga tgagcaaccc cagagattgt ggcaggtcag gagagaaaag tgaatgtggg
      181 gagggagctg gcaagtcacc accaacactg cagccagcgg cacatcccca caggagcaac
      241 gagttttcgt ttgcccatga ggaccaagaa gggtggctca ggagctgctt gtgctgccct
      301 cagcctttct cactctgtgt ctcttcctgt tccatctctt ctccttgttt ttccagaaaa
      361 gaaagtccag ttccagcgtt cagttaatgg tgagtgtcct tcgtcttcct aaatgccgat
      421 attgctgggc ctctccacat gttccagctt cccccgtttt tggaagttac ctcggggtag
      481 ggaagaaggg acagcggggt tggagggaac atcctcaaag ccgtatcacc cacaaaaaca
      541 gggttggtgc aggcccttgc tggccaccag cccctggttc ttgctgatgg gttctcatgc
      601 cgtttctccc agttctcctg actcaggtct gcaggctgca tcggtccaag gagccttgga
      661 gaaacacctt ccatgcctct gcggggactg tatggtcatg ggacaccttg ccaacctaca
      721 tcggggtctt ctgggtaata cacaagcaag gctctgctgg gaagagctag cagagccatt
      781 gctctagctc aactagcaga gttgc
//
LOCUS       KCLJ01000522             550 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 59183cal ultra-conserved element locus
            uce-4823, sequence.
ACCESSION   KCLJ01000522
VERSION     KCLJ01000522.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 550)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 550)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..550
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="59183cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>550
                     /note="ultra-conserved element locus uce-4823"
BASE COUNT          182 a           81 c          112 g          175 t
ORIGIN      
        1 acctgtgtta aaccaaaggg aggagagcag accaaagcag tttttgaagc catagttgtc
       61 agagcaaaat aattcatgtt gagtttacct gatgtcacat agacaaacac tggtgttaat
      121 attcattgta tggcttaatt ggttggatac agaatagcaa cacaagggta ggagacgctt
      181 gttatgtagg tcttcgtgtt gtttcaaagt ctttattatt atgacagcaa agtcttgttc
      241 attaaagttt cacaatccat tttcattagg atgaaactga ttctgtaaat gaacagttgc
      301 tctgaaaaat caaacccttg cagctatcac aggggaggta caaagtctgt attaattatc
      361 aggaatatgg tgtcgatcga agatgttaat tgccctgatg gttagttatt tggggaattg
      421 ccatgcattt catgcaggga taataaaaat gaatttttaa acaaagagat cttaaaataa
      481 tatataatct gtagagaata ccaacatcaa aggcttatct caaagctttg aattttatct
      541 ttgtggtcca
//
LOCUS       KCLJ01000523             618 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 59292cal ultra-conserved element locus
            uce-4524, sequence.
ACCESSION   KCLJ01000523
VERSION     KCLJ01000523.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 618)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 618)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..618
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="59292cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>618
                     /note="ultra-conserved element locus uce-4524"
BASE COUNT          144 a          128 c          158 g          188 t
ORIGIN      
        1 caataaggta tgtgggtcct ttctctgtat tggttctcaa gagtcgatcg catttttctt
       61 ttggagctgg cctgacgttg tgagataaag cagctcagaa aaaaatgttc tcaagcagat
      121 gcctttaaga gacagaaatc atgaatttgt tgaattgcaa ccactctggg ggtggctaca
      181 atgacttttt gacagtgaca gtaactctgc cgtgtctttt cgagcccttc tttggcccat
      241 tcactctgga aagctgctta agcgcactta agcgcattag catttggatg ctcggggacc
      301 gtattgaccc tcatttggaa agtttaaatg agtgaaagat ggagcgattt gttagagctt
      361 ttgaaaccag ctttagagag ctgcgggttt tccgctctgg tttgttcggg tgcttgttct
      421 aatctggtgt gctgtttgaa gggaccagac tgatttgtga cacatgagcc caaagcctct
      481 ttttttgggc ttgacccgat tatctgatct gtgctctgaa tttcaatcac ccgcgtttgg
      541 gaatggctca ttacctcacc tgtggacaca gatggcaaaa cggccgctgc tgtctgagca
      601 gacaaagtgc gagggaac
//
LOCUS       KCLJ01000524             363 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 59401cal ultra-conserved element locus
            uce-528, sequence.
ACCESSION   KCLJ01000524
VERSION     KCLJ01000524.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 363)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 363)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..363
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="59401cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>363
                     /note="ultra-conserved element locus uce-528"
BASE COUNT          104 a           53 c           65 g          141 t
ORIGIN      
        1 ccttctgcct ctgtatttgg agttgttagt gcaactcatc aaagaaaact gcctaatata
       61 tatatatggt aataattttt cctcttttgt agtctgcaca agatccatga aagattgtat
      121 ttttattact atttaaacag tgattaaatt tagcctgagc agtgagcaag ggttcacatg
      181 cattctttta tactgctgga ttttgttgtg catcatttaa aacattttgt atgtttcttc
      241 ttatctgtgt atacagtatg ttcttaaata atgttcaatt gtcaggagaa ctgtgagaaa
      301 taaactatgt ggatacagtc tgtttatata tagaatgctt gctgtgactt ccaatcagga
      361 tgg
//
LOCUS       KCLJ01000525             519 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 59508cal ultra-conserved element locus
            uce-1200, sequence.
ACCESSION   KCLJ01000525
VERSION     KCLJ01000525.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 519)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 519)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..519
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="59508cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>519
                     /note="ultra-conserved element locus uce-1200"
BASE COUNT          138 a          123 c          110 g          148 t
ORIGIN      
        1 gcataaattc actgatattg caggctttca gggagtttat tgtccgaatt tttttggggc
       61 ggcgcttttg atgcctttca tgtggttttt actgtatccc tctggatgca gttctgaaga
      121 aacatttctc ctgccaaaat acacacacag gctgggatta aaagggctga aacctaccac
      181 caagttctta ccgccctccc accatcatta gactaaatcc gccgtcattc cagattcatt
      241 tttcccttat tcatctgtcc aactaattcc tgctgcattc accgggctta catcttaatc
      301 ttttctgtta catagagaat acataatgaa aagctgcatt ttctgggtac atgcacacat
      361 ttggagcgga tgaaccatat gtgaagtgac atacaatgct gaatgggggc tgaatggtgt
      421 ccagtgctaa aaacagtgca agtccagaaa gcaggagaac aagagccctg tgctgggctt
      481 gcctcgctcg aacaccaggg gattcgccgc taaaacatg
//
LOCUS       KCLJ01000526             622 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 59620cal ultra-conserved element locus
            uce-3082, sequence.
ACCESSION   KCLJ01000526
VERSION     KCLJ01000526.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 622)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 622)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..622
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="59620cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>622
                     /note="ultra-conserved element locus uce-3082"
BASE COUNT          197 a          138 c          131 g          156 t
ORIGIN      
        1 ttgctgcaca atggcacgat gacattgggt gttctccagt aaatttttcg ctgagtgtcg
       61 caagcactgg aaacgccaga gcaagcgtgt tagcgttaga tacacaccta agaagaataa
      121 aaagaaaaga cctttttgca ccagaatttt ctcttgaaag caccgggagt cacctgaccg
      181 accccggagc ctccaggata acgcagcacc agcctgcaat gggaaagaaa ttaagcaggg
      241 ctgcctccgc ctcgcacacg ccttttagcc tgtcgacgcg ttgcctgtcc gtatccctca
      301 cagcgcatct gtagagccat taaattggat aatccctctg gcctttgata catttctgga
      361 catgattatt tcattactcg cagtatatca gtaggatcat aataaaaagg acttctgaca
      421 acctgccaag agttttgtgg ccttgtaaac acaaaagtgc tctaataaaa ttttattaag
      481 tgttaaaaag tcataaaaag tgaaataaca taaactacaa aatttactgt cctcagcaaa
      541 tgctgaaaat atcgtccata gtaaaattaa attagcatgt aatagcgcag cagcgtggag
      601 tgggcttgaa agaggatcca gg
//
LOCUS       KCLJ01000527             593 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 59732cal ultra-conserved element locus
            uce-2637, sequence.
ACCESSION   KCLJ01000527
VERSION     KCLJ01000527.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 593)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 593)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..593
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="59732cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>593
                     /note="ultra-conserved element locus uce-2637"
BASE COUNT          221 a           97 c           89 g          186 t
ORIGIN      
        1 aggaaagaag catgtagcta ctatttctcc cacatcggaa agtttgtgat ttctatacta
       61 tataatgcag aggattagct ttaacaatct aaatgcacct aagaatgatc aggaagccaa
      121 ttgatttttg aatagcattg agtgggtcag catgaaaact tgcttaatca ctttagcacg
      181 cgcttcacag tatatgtact gtactatact gaaaatttta taactacaat ttaaaagaat
      241 aagaaccaaa aacaactgca aagatagtgt acaaccatgt tatgcataga acattgcttt
      301 ttctaagggg aagcatatga gcatctcagt ttatacaaaa agcaggacga tagttgtcag
      361 tgcatcctgg tgaaaaaccc tcagcttaaa aatttaatta taagctagat gctaatcaga
      421 aaatattctt tttccttaaa tttcttcaat acatccccaa atagtgattt aagcatcata
      481 caaagttaaa cttcaatagc atacaggtat ttatggtttt catatgaaaa atgtaaggaa
      541 atttgctcaa aacatatgtt tatacttttt ttaccacaaa catatttata aac
//
LOCUS       KCLJ01000528             755 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 59841cal ultra-conserved element locus
            uce-81, sequence.
ACCESSION   KCLJ01000528
VERSION     KCLJ01000528.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 755)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 755)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..755
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="59841cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>755
                     /note="ultra-conserved element locus uce-81"
BASE COUNT          230 a          188 c          186 g          151 t
ORIGIN      
        1 ccacaagggc ggtgcagtcc tcaggaggca aacacagcag ggtgcagccc tatgaagatg
       61 atcctgcttc tttgtgcctt gcaggatggg agctctgctg cagccacact aactcctcgc
      121 tgctctccgc aaagccacgg caggagacaa taacacacgg ccatggctct gagccactcc
      181 aagggaggat cccacctcac acaaggctgt ccaagaactt gacaggactc tgtttgaaaa
      241 agatgttgaa agaaatgatc tctttaagtg caatgggaga tatttgtctc tgatttaccc
      301 ttggcttttt gctctggttc aggtaggagc ggtgtgggat ggctggcaga tctgagagca
      361 tggcacgccc cagcgggcaa agcgagcagt gcggaggaag gcgcgagtca gtttggagtg
      421 ctccccattt atcaaactca cgcagcccgc cagcagagcg agtctttcca tcattacagc
      481 tctcaaaatc cgattcatac cactaatcct gccttcattc tcccagatta ataacatctc
      541 tttcaacctt cacagtgtga taaatagaca aagagagaac aaaaggagaa acagaagtga
      601 gagaaagagc cagagcaact ccacataata aagagaacca agaaagggga aaggaaaaaa
      661 aagggaaaag aaaagggaaa gaaaggagcc ggcacacttg actctgccat ttactttagc
      721 agattctccc caagagcacc ctgccatcct taaag
//
LOCUS       KCLJ01000529             718 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 59949cal ultra-conserved element locus
            uce-1190, sequence.
ACCESSION   KCLJ01000529
VERSION     KCLJ01000529.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 718)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 718)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..718
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="59949cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>718
                     /note="ultra-conserved element locus uce-1190"
BASE COUNT          248 a          131 c          132 g          207 t
ORIGIN      
        1 aacaaacaaa tggaaaacaa aagcagaaaa caaattaaga aacaaaatca aagacattag
       61 cttgcaaact taggtaattt agaattctag gaacaatcca atagctactt taattaacac
      121 atcctctctg caatcagctg aaggcgtaca gaaatatata cttttacacg gcttaacacg
      181 gccaacataa aatagataat ataatctgaa agataaatag agtttaatac cttagtaatt
      241 tgtacttaga aacaaaggcc ttggtgcagt cttgttgtgt gcacttgtag ggcctctctc
      301 ctgtgtgaga gtatgagtga acctttaatt tctcaacact gttaaaggcc ttgtcacaca
      361 gttggcaagg aaagtttttt cttggtttgg tttcaccacg cttacgtttc cctgaaggga
      421 ctttctgggt atctcttact tctgacaaat caccaggaat gacagtggcc atcgcagcct
      481 aaaccaggcc ttcttgttgg acacttggga attgcccaac tccactaaat gatttagctt
      541 tagatggctt ctcaagtttc atgtggtcgt aaaagaaagc aaaaggggac tggaaaaaaa
      601 aaataagaaa caactagttt gtaactaaac ttagattttg aagtttactt gctatgtgat
      661 gcttctgaat aaaacttaaa aataaagtta ggttcagctg gtctaacgta atacctac
//
LOCUS       KCLJ01000530             635 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 60046cal ultra-conserved element locus
            uce-1288, sequence.
ACCESSION   KCLJ01000530
VERSION     KCLJ01000530.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 635)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 635)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..635
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="60046cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>635
                     /note="ultra-conserved element locus uce-1288"
BASE COUNT          195 a          112 c          111 g          217 t
ORIGIN      
        1 tcttgtttat gtgaaccagc ttcaaagtga atggcaggag gatctagata gctagaatta
       61 ttcagctttc aaaatctcct agctaaaaat aggaagtaat agcaaacctt aagaatacaa
      121 aaaaaaagat ggtatcattc tgctagtgca tcttgcttaa cttctgattt atcttttaaa
      181 acgtttcttt ttattagcat ccatatcctt cagaggagca gaagaaacag ttagcccaag
      241 acacgggact tacaattcta caagtaaaca actggtaagt gaccctgcaa tcaatatctt
      301 tactcccatg gctaaactgc aatttctaaa taattgtttt ctttttcatt tctgaaccaa
      361 atgcaattga ctaggaaaat tcctgtgttc attcttctta agtatgaaaa tagcacttag
      421 ggaatggtag atcttaccta ggtaaattgt ttttcaagat cattctcttt ctgcttgcaa
      481 agtgtccaac tgagccttgg attctgttca ggtctttccc attgaaaaca cctgaaaagc
      541 cacatagttt tgcacagtca tagtatttag gttatcagtg tggtaatggt tgtctttgtt
      601 taggttttga gtggtgattt agctacaagc atttt
//
LOCUS       KCLJ01000531             716 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 60155cal ultra-conserved element locus
            uce-7823, sequence.
ACCESSION   KCLJ01000531
VERSION     KCLJ01000531.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 716)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 716)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..716
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="60155cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>716
                     /note="ultra-conserved element locus uce-7823"
BASE COUNT          244 a          128 c          122 g          222 t
ORIGIN      
        1 acttttcagt ctaagatggt tactgcatca cctccagtca gaataaaaca tctctgttgt
       61 gtatcaagat tcatcaccca gctgagctaa aattccctgt ttgctctgaa attgtggtct
      121 cctacatgac agtaaaattt gtgaagtccc atctccaggt tgccctgaca tttatatttt
      181 agccagaaag aaacattaag gaggcctaca gactaggaag acaattgaaa aacctctaag
      241 aaaggaaata tcttattaat tcattaagtc aaactgcttg tatctacact tgtatgacta
      301 gaattatggt tcattaactt catttcttta tatgagttaa ttagctcaga ggaggccaga
      361 aattaattac cagcttatat agtttgtgca gaatggcatt ctgtttattt agtttctcct
      421 attaactttt aatctcttca aacaataaaa gaggtaatta gtattttata aacaaaaatg
      481 aatgcaacaa aggcaaataa tttgccaaat agtgaggctc ctgtgtggaa cctgatagtt
      541 gtgtggttca agttacagac cttttcaatg ttaagtataa gcaaaaattg aaaatatagg
      601 tagtcttcag gcagggccat gcaatccatc atgaaagaag agctacctac taatacctca
      661 cagagcagaa aaacgagcct taaaaagttt cctgctgttt gaaaataatt gcccat
//
LOCUS       KCLJ01000532             692 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 60263cal ultra-conserved element locus
            uce-6568, sequence.
ACCESSION   KCLJ01000532
VERSION     KCLJ01000532.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 692)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 692)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..692
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="60263cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>692
                     /note="ultra-conserved element locus uce-6568"
BASE COUNT          220 a          133 c          131 g          208 t
ORIGIN      
        1 aagtgaaaca atcttgttta atcccatgta ccctaaagta gaagtgcagc cacaaactga
       61 attaaagtag tggtgatgca ccactatagt gaaaagaatt tacgtaattt aacatgctca
      121 actacttggg aaaattttgg tcaggttagt tttcattatt gttaagatca gacgactgag
      181 cctatagcaa aatcaaacaa ttggttggag tcttttgatg acaatagcat gcccttttta
      241 ccacgaaact gtggaaatgc tctgtgcgtc ttcccagcac ccggagtcat ccacccccat
      301 cttataattc aacctgcaaa cagattaagc agctgagttt gtggaaagtg tgtttacttt
      361 gagctaagaa cccttgtgtg acactataga gattcctctg acacctctgg gagagctaca
      421 cagacagttc gtactcatca gcagggaaac cgggctgaga attcccaatt tctttgtaac
      481 ctcaactgct tcatacaaat cagtgtttgg caattaggca ggaactcatt tgttaggtta
      541 gcattttatt tagaagatgt aggatgttct acatttcaaa aaaggactga caatttataa
      601 acctgtcaac agtttttggt attaattaca gtattaattt ttagcaccgc cttaagagga
      661 tgaaaatgtg tcactaaaat tcatacacta aa
//
LOCUS       KCLJ01000533             447 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 60376cal ultra-conserved element locus
            uce-955, sequence.
ACCESSION   KCLJ01000533
VERSION     KCLJ01000533.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 447)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 447)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..447
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="60376cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>447
                     /note="ultra-conserved element locus uce-955"
BASE COUNT          158 a           74 c           78 g          137 t
ORIGIN      
        1 cctttccaaa agctacttct tgcaaacttg taattaaaaa aaataataat aaaagaagcc
       61 acactctcac catttgaaaa tgatactttt gattgctttc ctaactgtca tggacaagga
      121 catgacacag attatttcta tgcacatatt agttaaaaaa tccagctgac tttagagttt
      181 gtcaatatca ggagaggtaa ttaactgttt tgaaagaatc cgtaatgtgg gactttgtaa
      241 tggcatcatt tggagtcaag tcacagatgc ggcgtgtgga gccatactgt aattaggaag
      301 aaatgctgta caggttttct actaattagc aaattatgct gaaaatagca tcaagctaat
      361 taacagttat tatggcattt ttgaaagtat gactttaatt agcaaagtcc tgacgcatgc
      421 aatttcaaac ttgtccagaa aaacaca
//
LOCUS       KCLJ01000534             355 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 60477cal ultra-conserved element locus
            uce-75, sequence.
ACCESSION   KCLJ01000534
VERSION     KCLJ01000534.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 355)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 355)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..355
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="60477cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>355
                     /note="ultra-conserved element locus uce-75"
BASE COUNT          141 a           55 c           47 g          112 t
ORIGIN      
        1 aatgaaagaa aattctgcct aaaaatgcac ttccagggag gagaaggccc cacaaaacag
       61 atacagggag ttggaagttt aatacagaaa atctatttga tatttattaa acttagtttc
      121 tccagttaca gttttgcatt gtacaaagca ttttaatgac acagtagtta aaaagatctt
      181 tacaaattga aatgtgatac ccttttctcc aaatatttta attgccataa atttgtttaa
      241 aaatacacat taaacgcatg tttcagacac taaactttct ataatctcaa taccacaaaa
      301 tacatagaat atactataca gatgtggaaa aaatctagtt agtatataat acttt
//
LOCUS       KCLJ01000535             694 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 60582cal ultra-conserved element locus
            uce-6209, sequence.
ACCESSION   KCLJ01000535
VERSION     KCLJ01000535.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 694)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 694)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..694
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="60582cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>694
                     /note="ultra-conserved element locus uce-6209"
BASE COUNT          183 a          169 c          149 g          193 t
ORIGIN      
        1 ttctcaaccc agctgacttt cctggtttgt gccttgcttt cttgcctctc cttagctgtc
       61 actacatctc gctccctgta agcagctcag tctcattaaa agcaatgtgg tgaaactagc
      121 cacatcatta tacccactta gatggggctc ttgtagccag cacttaccct tcataatagc
      181 tgccacttag ggtttgtgaa attggcacct tcctcctggt ttgttccgtg tcttattttg
      241 aaatttacat gtcctcagaa caaataaaat tcacaacaac aaactaatta atggattcca
      301 gttttgacag ctacaagaag acagatgaga aagtaacatg cttctggcag cgtgttatca
      361 attgggaggc accagtgcat cgcctctatg tggtacagtg agctggaacc gacactgaca
      421 gatgacacag cccttgacag tgaagcctgt atgagctgac agctccactt gcactcaggc
      481 aggtccacgc tctgcacggg aactgaacca gcttgatgtg cagaatatgc ttgcttttat
      541 cccccggctg tacagtgggc aggctgagca gcactgtcag gtggagccca ggacctacct
      601 tagaaagtta aaactgtgac aagtgctaag attttaccag tagaaatata ttaaatcagt
      661 ggataagtat ttatcttcca gccagtgcct tggt
//
LOCUS       KCLJ01000536             440 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 60693cal ultra-conserved element locus
            uce-5948, sequence.
ACCESSION   KCLJ01000536
VERSION     KCLJ01000536.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 440)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 440)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..440
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="60693cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>440
                     /note="ultra-conserved element locus uce-5948"
BASE COUNT          138 a           67 c          108 g          127 t
ORIGIN      
        1 ttttgaattt ggacagactt aaagaagtgg catcaaattt gaagggcacc caatcaatct
       61 gttgtcctag ctgcatgaaa ttgtatttcc ttgccacttc atatcttatt tgcagcagct
      121 gggctgtaag tcattggtga taacattctt tattatgcag ccgtgtttat gaactgtgcc
      181 tggaaagaga tgatagaaat atgcagcaat atgcaaaggg gggaggggga ataaatgctt
      241 gttgctaggg caaccatggg gctattttgg gcatcaaatt ttgcagatga tgaaaagcat
      301 tttcatgtga tggttggtct ctctgggaag agaaagggag agagggcaca caataaacgg
      361 ggagataata ttcaagaagg cagtcattta tatataaata catctatagt ttcagctgca
      421 ctgaaaatgc attaaaacca
//
LOCUS       KCLJ01000537             601 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 60803cal ultra-conserved element locus
            uce-3902, sequence.
ACCESSION   KCLJ01000537
VERSION     KCLJ01000537.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 601)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 601)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..601
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="60803cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>601
                     /note="ultra-conserved element locus uce-3902"
BASE COUNT          185 a          118 c          121 g          177 t
ORIGIN      
        1 attcatgctg ctttccactg tcacacattg cacaccctat ccttccattc cagatcttat
       61 atccaacaag cttttgctga ctacataacc ttcactaacc tgaaattcct gagtagtccc
      121 aggagctcaa tgcatcttgg aataaaattt ttgtaatgtc atttaagggt attcctaatc
      181 cagaattatt gaggaggcct gggtcatggg aattgagttt gacacttgac aaatacttgg
      241 ctttgtgtaa atggacaggc cactgaaata actgcctttg gatgtcacat gaagagaaat
      301 taattcttta ttaacttccg caatgataat ctaataaact catttggtct actagtttca
      361 gcacttaaag agctcagtcg attggatgca aatagaccct ctggagcagt gcctctgtgg
      421 tgtgcaaagg gacatcagtg tgcaaagtca ggtctggcat gtcaggacat acatgtccag
      481 ttcgctgctt agcatgagag agacaggcac agcagaagga caaatagcag gggctaaaaa
      541 tactctatta ggaaagaaaa gggttttatt ttttaaacaa aattgctata atttgaattc
      601 a
//
LOCUS       KCLJ01000538             533 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 60910cal ultra-conserved element locus
            uce-7292, sequence.
ACCESSION   KCLJ01000538
VERSION     KCLJ01000538.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 533)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 533)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..533
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="60910cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>533
                     /note="ultra-conserved element locus uce-7292"
BASE COUNT          176 a          106 c           90 g          161 t
ORIGIN      
        1 ccaattacta ctgtacttaa cctaatgaaa ttttattctg cgggattctt aaacaaaata
       61 taagattaaa aacttcgaga caaagaaact cctagagaaa agatgcaaat aaaattactg
      121 ttttttattt gcaagtagga gaaacaaaag catggaacat agcatctgtc atatcagaat
      181 ataaaaagat gatcctggca ccaaatgaaa aagctctaat tcatttgcaa atcaagcctg
      241 ccagttctat ttcaagctgg cggtaactgt caagagttaa caagataatc actttcaatc
      301 ctgccttcaa tggtacatta cactgttatt ccattcaata aggcccttct ttggggcact
      361 ggatgaatgg ttttcatttc caactcacac aaaaagttgc tccatggggc ttaagaaaga
      421 aatcccttta tgggcattta tctgccggca cttgctttta ggcaaaatga gatatttgga
      481 tacattggtg tccattcact tcctctattc cttcaggccc tcagtctggt gat
//
LOCUS       KCLJ01000539             674 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 61020cal ultra-conserved element locus
            uce-1579, sequence.
ACCESSION   KCLJ01000539
VERSION     KCLJ01000539.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 674)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 674)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..674
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="61020cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>674
                     /note="ultra-conserved element locus uce-1579"
BASE COUNT          168 a          114 c          136 g          256 t
ORIGIN      
        1 ttaacagatc tgtcagaaca aagcaaatat gtcatattgg cagctgttac ttatgagtac
       61 tttttcttta ttgcattttg ttttgtaata attgagaagc ttttatgttg agctctgcat
      121 aaatggtact gagtgggagg gtatgggcat gctttctatt attctgcccc tcatgcatgt
      181 ctcctttttt cgtctttcca gaaccacaca ttgagccagc acgcacagtg agccactggc
      241 actacaggac acctctctgc agaagacttg acggtggcac agtggggagg accatttgaa
      301 cattacatcc aatcaaagtg tcatttgcaa cccagatgta aaactctaat gatttggcca
      361 tgaggcgctg ctattataag cagctggaaa tgaatattaa tggaagagat taaaagtatt
      421 ccatgctcag tattttttat tgtcctgctt cagctagtgt actttagagc ttctgcttct
      481 gactgaattt atagtgttag ataaatctgc tttgatgctg ttgccctttg ttgcttcttg
      541 tattatattg atagttaaag attaggtgtg atttttttct tttttgttaa ctgcttttta
      601 attgcaattt taggtaactg tgcattgtga tgtgattgct tggctattgt ctgaatattt
      661 ctttttaatt tttt
//
LOCUS       KCLJ01000540             558 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 61127cal ultra-conserved element locus
            uce-4532, sequence.
ACCESSION   KCLJ01000540
VERSION     KCLJ01000540.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 558)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 558)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..558
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="61127cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>558
                     /note="ultra-conserved element locus uce-4532"
BASE COUNT          152 a          130 c          128 g          148 t
ORIGIN      
        1 actgaacact gttgcaagtt atgcaggtag tatttcaatt taattctctt taatgctata
       61 aatgccaagc aaatcattaa aagaaatgtc atctctatca gtggcagctg ctgttgctac
      121 gaaagaggag gggaggtgca ggagcagggc agccagcaga gcccacagcg gtctgcagag
      181 tcactagtgg gaaaacaaca aaggcctttc catgcaacta ccacagatgt gcccagagcc
      241 aaactgtcag aagcacttag ggtgacagct actcacagtt cattatttcc ttctcacagg
      301 tcactgggtg acaagctggg tcaccgtgct tgctcggctg ctcccggctc cctcttctga
      361 cggcactcca gtcaaggtct gctgtttaat acatcttcct cctcaggtgg atggatggca
      421 tctcctctct gtgctgggtt tgtattacga gatacagata ctagaatagt tttgtcaaga
      481 tgcgactaaa gcagattatg aaagctaatt tggcaccaat ttgaagtttt aacctttaca
      541 acactcacat ggcagatt
//
LOCUS       KCLJ01000541             657 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 61237cal ultra-conserved element locus
            uce-5190, sequence.
ACCESSION   KCLJ01000541
VERSION     KCLJ01000541.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 657)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 657)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..657
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="61237cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>657
                     /note="ultra-conserved element locus uce-5190"
BASE COUNT          172 a          148 c          143 g          194 t
ORIGIN      
        1 ttgcctcagt ttttctcaag ctattgttct tttttacacc gcgtttgcac actgcagtgc
       61 atctagggaa tttcagcagt cggaatatac atgaaaagag acccgctcta ctttcataag
      121 gtccctggat gaattggacg aaacctcaag gccccatggt ggagccagag ccgcattcat
      181 attccttgcc atcaccacac atatgatagc atgaagccca gaccaatcga aaacttgaca
      241 gtaagccttt tgattttgcg gggaagcctt catcaagctg agagagggaa gggaatatag
      301 cccaaactgg acttcatact gtggcaagtt tgaaatccca gcccaaccac agagctgctt
      361 gattggaata gttggaaact gtgtccagga atccggcagc aagaacttgg ctttcagtta
      421 ctcttgcctt tttaaaggaa aactcaccat acaggtcact tggaagcctg atttattttg
      481 tcaggatttt aaatatgtac actcttgcgt gtgtagtgtg tgtttgctgc tatacaggtc
      541 tgctccacag cagctttgtt tcttagcctc atggtggaac tctcttggct aaagctgcca
      601 cactttgatg ttttcttcta ggctgtttca ttatttggtc cttaaagaaa cagaaag
//
LOCUS       KCLJ01000542             498 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 61347cal ultra-conserved element locus
            uce-6592, sequence.
ACCESSION   KCLJ01000542
VERSION     KCLJ01000542.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 498)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 498)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..498
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="61347cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>498
                     /note="ultra-conserved element locus uce-6592"
BASE COUNT          171 a           83 c           87 g          157 t
ORIGIN      
        1 tttctactgg gtaaacataa acaaaatgaa atgccttact ctgaaacaat aaaaaacctt
       61 agaacttttc cagcaagacc tgtcttattg tgtgtagagg ggcatggggg aacataaaac
      121 atttagtaaa caaaacataa agcatcttta acatgaataa tcagaatgct tttaaattgt
      181 tttgttgcaa ctataaatca ctataatcag tgcaatcact cagctctgac atccattagc
      241 cgcttggtta cagcaaatta acaaagaaga gagaaagtga ttcattatct cattcctgtt
      301 aatgactatc agatgcattg cttaattagg ggatggccat tgtagtagga agaaggtcat
      361 atgcctttcc acaaatcttt ttgctccaag tttaagtctt ccataatagt gcttgtgttg
      421 aatagagtaa gttattgaca cctgtcataa ttttgtggat attaatagtt accagtagcc
      481 aaacctagta tttgtaag
//
LOCUS       KCLJ01000543             633 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 61455cal ultra-conserved element locus
            uce-5185, sequence.
ACCESSION   KCLJ01000543
VERSION     KCLJ01000543.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 633)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 633)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..633
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="61455cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>633
                     /note="ultra-conserved element locus uce-5185"
BASE COUNT          203 a          134 c          112 g          184 t
ORIGIN      
        1 ctccctcaca ggaattttac ctattgacat taccactatt ctgtatgttt ggtttggctt
       61 gcaacaaata tatttacctt tttaggtata agtaaagaaa caaagttagc tattagataa
      121 gagttcttgc tgccaaaagc cataatctga cacagattga gcctggtaca gtagtcaatt
      181 aatggctcag tgctcataca ataatgacct actaacctga cggtgtgttg ctctcacatt
      241 ttgctgtccc ctgggatgcc actgtcactg tgttatctat tgcctgcttc cctatcaaag
      301 aaaataagca gagctgaaat gtatgtacgc atcaagctct gtagttcatt gcacaccaac
      361 cccagcaact ggaggaacaa tagatttata agtttatcct acattaaacc aaacatgcct
      421 gactgcactg taaattacta aataataaac caggtggtgt aagatcctga cttggacaga
      481 atataaaaat ctatcaacct gtaaaataca ataaccataa acgtgctatg tagctgatgg
      541 ctcaggtaaa ccatccacct ccagcagcag aggttttgct ggagtaaatt gcaacaaaag
      601 gtttactaaa tttaggtctg gagcacttct tca
//
LOCUS       KCLJ01000544             346 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 61564cal ultra-conserved element locus
            uce-7136, sequence.
ACCESSION   KCLJ01000544
VERSION     KCLJ01000544.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 346)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 346)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..346
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="61564cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>346
                     /note="ultra-conserved element locus uce-7136"
BASE COUNT           95 a           92 c           56 g          103 t
ORIGIN      
        1 cctgggcaca caaagccagg cctgtaattc aatgctcaat ttacccttgt ctcagtggag
       61 accccgctaa ttgatagaaa ttaagccatt aatcaaggca ccagccatca ttcaacccgg
      121 ggaagatgaa tccaaacttt catcataacc accttcccca ttttagtgtt cattagcatt
      181 aatttttaat gcaattatgc tcttctttta cgctgagctc ataaattact tttgttgctc
      241 gctggccttg taaaatccaa ggtaatgctt tgtgctctga tcttaaaggc aattactgcc
      301 tgcttcatac ctccatccca gaggtacaga ctcacggatc ccacac
//
LOCUS       KCLJ01000545             684 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 61667cal ultra-conserved element locus
            uce-4688, sequence.
ACCESSION   KCLJ01000545
VERSION     KCLJ01000545.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 684)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 684)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..684
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="61667cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>684
                     /note="ultra-conserved element locus uce-4688"
BASE COUNT          218 a          112 c          109 g          245 t
ORIGIN      
        1 cacggaaatt actaactaat tgaactattg gtcttttatt gtttcaggaa gcaggacaga
       61 gtgtcattcc tttatctctt aaattcatta ttatctcata ttacaatttt cgagcaatat
      121 atgcctccta atagattaat acataaataa cccgcccagt agtgccacag tgggcaaaag
      181 tgtttgaaat aaaaccacct gttttaatta ttattcagat tcatgctgtt aaaaaatggt
      241 aatcctcttg cagttatatg acatttttaa agctttgaat ttccatctgt atcttatatt
      301 atgatgtttc aggattgtcg tgagctaatt atgttaactt tggaaacatt gcctgcattt
      361 agaatgaaaa acttcagctt gaatagccag gaaagcagat gctatctttc ttgtcaactg
      421 ctttgttgtg tgatgccttg aaactttttt ataagattct gtgtccaaaa ggaagtataa
      481 atctccattt atttgaaatg ttgctctaat ctaatcaata ttttaatata tttctcacgg
      541 gagggacctg aatgcgtctc aaggaaccaa agacatgaaa atctcttatt ttatgttgaa
      601 atcctcgtta ttacaagtcc attcacaata atttgtagaa caggaaaaat ccatgtactg
      661 tgaagttcta aaactgtttt gaag
//
LOCUS       KCLJ01000546             593 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 61777cal ultra-conserved element locus
            uce-7518, sequence.
ACCESSION   KCLJ01000546
VERSION     KCLJ01000546.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 593)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 593)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..593
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="61777cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>593
                     /note="ultra-conserved element locus uce-7518"
BASE COUNT          214 a          100 c           97 g          182 t
ORIGIN      
        1 ttagcacctt agtgaactca accactgaat gtgagaaatg agtgcatgaa gtgtgattac
       61 tcaacaggta ctgtaccatt ccatgaggag actgtgtctt cttgagcatt ttgtgactgg
      121 tagtatctgt gatttttcta aacaatggct acagttaaac aaagaaattt aaagcaatca
      181 ttcataagga ttgcatcaac atcagttagc agaggaagat caaactttat tgaaactgct
      241 tgcatacaaa atatattgca ctataaccaa acaaatgtca acataaaatc caatctgttg
      301 tagctaatat gtacagagaa tattgcccaa gagcagttac attacaaggt cagtctacct
      361 tggttaatta tctacagtat tttaaaccaa acagcttaca gatgatgtgt gcaaggtacc
      421 aatttctgtt ttcaaatact atacattccc aaaataaata actagaaatc aacattaatg
      481 tttggcaata ctttttaaga catttttata tttgttaaat catgtgcagt tcgttgccag
      541 ttttatatgc tcacctgtat gcaaggaaga aagcaaagaa aaaaatacat cag
//
LOCUS       KCLJ01000547             706 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 61887cal ultra-conserved element locus
            uce-5914, sequence.
ACCESSION   KCLJ01000547
VERSION     KCLJ01000547.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 706)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 706)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..706
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="61887cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>706
                     /note="ultra-conserved element locus uce-5914"
BASE COUNT          239 a          147 c          106 g          214 t
ORIGIN      
        1 tgtacttcag cacaaactgt atcttcaaaa caatgacagt ttctcttatc ttttctaaag
       61 cactttaaaa ctacagccca gaaatacatg gacaaagaga aattaaagca actgaagctg
      121 aaatatgcta cttaggaatc caaagtttgt ttacaccatt agaaggcact caaatatata
      181 tccccataaa tgacaaggtc ccagcagcaa attaacagga acaattttcc catctcagga
      241 gctgtcaaga tgggctctgt tagccaattt atcttactct agcacatctc tggtgcttgt
      301 caatcaatat gtgaaacatt tggtgttgat tgccattttt ctatccactt ccttttgcct
      361 ctcgtaccag gcaatttact gcaagtcaat caaggttgaa gcagaccttg tttaaataaa
      421 acactgttga gttcttttca caccaacaat ttcaaaaaca gaatgagctg tagctcttca
      481 catttacatt tatactactt tttctcccaa atgccatgct caagctataa gtcataacta
      541 aactcagccg aaggcttatg gagaaatcag tcaaggaaga tgaactgctt ttgctgtcat
      601 tcaggctatc aatggagaca gacaacatta aaaagtactt aaataatctg agattgaaaa
      661 acaacttctt gtctgaattt cttaactctg gataaatatt tcaaat
//
LOCUS       KCLJ01000548             640 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 61999cal ultra-conserved element locus
            uce-7463, sequence.
ACCESSION   KCLJ01000548
VERSION     KCLJ01000548.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 640)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 640)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..640
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="61999cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>640
                     /note="ultra-conserved element locus uce-7463"
BASE COUNT          221 a          114 c           99 g          206 t
ORIGIN      
        1 gttacaaaat gaagtgagga cattctgtca cctacgcact tctcctttgg tgaagccaca
       61 cataacacaa agttaattaa agcctctatt ctgaaaggaa tgttccattt ggtaaattta
      121 gaaacagctg gttagtttta tccattactt ttgtgctaac atcagttgag ctcattcaac
      181 tctctctttt tatgaagctg tccttcctat gctacctgat agctactaat tgctgcaact
      241 acatttctga attgcaaatt ttctgcactg ataaaaactt tgattgcctg tcagctacac
      301 ataaggaaaa gatcaccagt gctaaatgag gtgttccacg cttggataat aatgcctaat
      361 gaattattca aaaaagaatg cttgaatgaa gcaaacaatt tgaagggtta ctagcagccg
      421 taacagttca acagccaaaa gaacaaaagt atcatcctga aaattacact aatgattaaa
      481 aaatgtgtat taattctaca tttggagaaa aaagaaatgc caatctgatt ttaaaggtta
      541 atcattattt tttcactaat gctctaatct ctgggaaaaa caccctttac caatattttg
      601 ggagatataa tattatgaca tagcatattt atatgatttt
//
LOCUS       KCLJ01000549             589 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 62107cal ultra-conserved element locus
            uce-1564, sequence.
ACCESSION   KCLJ01000549
VERSION     KCLJ01000549.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 589)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 589)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..589
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="62107cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>589
                     /note="ultra-conserved element locus uce-1564"
BASE COUNT          181 a          119 c           94 g          195 t
ORIGIN      
        1 aaaaatttca tatcagcaaa tggcataatg ttatatttat attaattgga tattcttggt
       61 ttactgctca ctccattggc accccataat atacaatcta aaatccatgt ttgtgcacag
      121 tgtataattt aatgcatgag atacagaaga tcttccagct tttaaacaac aggagggaaa
      181 cattttccat gctcagtttc cctgctattg gaacatttgt tttttattct gaatatttca
      241 gcacatctat ttacctggta ctatatttag taccacagta ccaagatggc atatataaag
      301 attcaattgc aattcccatc tgatgtccct tccctctcct ttttaccccc ttttttatgt
      361 ccgcactctg aattcagcac aaagttggtg tgtttaattt aaaaagaagt aaaacgcgcc
      421 aggagacgcc tcagaccact gcaaatcacc tactttatag aggcagtaaa attgtgtatc
      481 ggattaaaag tgatgctgat ctgaaattta tgataacttt taatggcatt ataccctgtg
      541 cgctccatca ccagatcgtt tggatgcaca gagcagcaag atgaaattt
//
LOCUS       KCLJ01000550             586 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 62217cal ultra-conserved element locus
            uce-1648, sequence.
ACCESSION   KCLJ01000550
VERSION     KCLJ01000550.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 586)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 586)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..586
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="62217cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>586
                     /note="ultra-conserved element locus uce-1648"
BASE COUNT          182 a          109 c          103 g          192 t
ORIGIN      
        1 ggtggtgctg aataagcatg cttatatgga atttctcttt gaaaagacca ctagttaggc
       61 cctataacac ttcagttgat atttccacag tgcaaacacg atagtggaaa ttaagttgcc
      121 ccagcaaatt cagtttagga gaaatttgtt atgaataaaa tgctgctgct ggccttagaa
      181 cattgaattt atccaccaaa taatatctta gaaataccac ttcagaagaa atcagctcta
      241 aataattgat aaatttggtt tgtttagaaa ccttttgacc cctgtaatag aaagtaaaaa
      301 cacatttcag ttattaaagt cacatatatt ccctctggta ggggaagctt ttaattttaa
      361 gctggtctct gttggggcca tttgataaag cttggaaaaa ccttttcaac tgctgctggt
      421 ggatttgggt cagcttccct tgggaaaatg gcaaaagata aatttgtagc ttttcataac
      481 acataagaaa acttcagaga ttttaaacat caagaactat tggaactgaa agacagagtt
      541 tctcttttgt ttctccccct cctcctcctg ctccttcttc tctttt
//
LOCUS       KCLJ01000551             309 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 62330cal ultra-conserved element locus
            uce-3914, sequence.
ACCESSION   KCLJ01000551
VERSION     KCLJ01000551.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 309)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 309)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..309
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="62330cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>309
                     /note="ultra-conserved element locus uce-3914"
BASE COUNT          127 a           49 c           55 g           78 t
ORIGIN      
        1 ttcagccaag gcagccccaa tatttgaggc catgcattga agagggaaag gttgatcaac
       61 ccatgtgtaa tataaaaatc aagactaaaa ccaggcatca tttaatgtat tttaatagca
      121 aacttacagg aacagcacag aagacagaca acattaaaaa catgtacttg catgtaggac
      181 aactcagtta gaaaagtata gtgaatggat ggaatctact gtatgataaa aatgctacaa
      241 acagccattg ataagaaatt tacttgttta aaaaaatcca aatgctggca aaaatttgac
      301 agatttatt
//
LOCUS       KCLJ01000552             686 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 62434cal ultra-conserved element locus
            uce-2279, sequence.
ACCESSION   KCLJ01000552
VERSION     KCLJ01000552.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 686)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 686)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..686
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="62434cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>686
                     /note="ultra-conserved element locus uce-2279"
BASE COUNT          236 a           97 c          128 g          225 t
ORIGIN      
        1 aaagcccttg tgagttaaat ccctgagatg ttatcattgt gtgataaatt ttgctgattc
       61 ctggtctgtg ttattggcac aagggagcgt atcaaaggtg tttaacacaa ataaactaaa
      121 ggaaacttct gtttttaccc aacaagatca ggtccacttt ctctatgatc agagtattac
      181 aaagctagta aagaataatt tatatcagaa gttctgtgat ggaatgaaat ggagctcttt
      241 tgaagtatga tctctgaaag cacagcatga agctcaaata aagtgaagga cattctctat
      301 aacaagtaat gtccttaata atcttgttag tctagtctcc ctctgtaaga gacaaatgga
      361 acattattgg cttatgggct gtagtaaata atttagtttc caatattcag gctgctttga
      421 cagtaaatta aaatgacatg aaaggggctt gttgaataaa gaaagtatcc aatcaaattt
      481 aattggcatg actaaggcag tagaaatatg ttttataatt aaaccatgtt gtcttggagc
      541 tttataagca tgtatgaatc aaaatgtcaa aaattattct ttgatattgt gcatttaaaa
      601 ctttgcatgg tgaatagttt tcttaaacaa ggttctagac acgcatattg attcaacatg
      661 aaaatagtct tagcgttaaa taagtc
//
LOCUS       KCLJ01000553             653 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 62545cal ultra-conserved element locus
            uce-5647, sequence.
ACCESSION   KCLJ01000553
VERSION     KCLJ01000553.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 653)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 653)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..653
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="62545cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>653
                     /note="ultra-conserved element locus uce-5647"
BASE COUNT          180 a          137 c          139 g          197 t
ORIGIN      
        1 aaagcagctg atttaacatg tgaagtagac ttaacaattc cttctgcttc accccctctt
       61 ccccaaacac atttaaataa accaatgtct ttgtggcctc tgcaactgta attccatgtc
      121 tcctgggggc acaaggttta ggtgaagaat ggagaccaca gacccttttg ggataaggat
      181 tagctttaat cttgaggtga ttcttgcagt tgtaggactc tgtgttctgg ggaatgtgag
      241 ctgatggatc attcctgatg ggactcccat gaaatactac cattgcaaaa cagattgacc
      301 ttggagccca caggagtcaa cttgatgaag agcttagttg gaaccggagt gacaattgga
      361 agccaaatga atcatatcaa gtgtgaccat tacaggcctg aaaatgattc ttaattaacc
      421 actgatcctc tgtggtagca agtttccaaa atctgtgaat ccataaggga acccgtgaaa
      481 atataaaagt agcaatttac ctaatctaat agctctgctg tgctgcctct ttgacaacgc
      541 tttatttttt gtttcctgat gtgttagaag aggtcctcag gatcctgctg ggtttggtga
      601 gaccattgta aacttgcaca ggcttcccca tatttttctg atatctccct ttg
//
LOCUS       KCLJ01000554             477 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 62655cal ultra-conserved element locus
            uce-7676, sequence.
ACCESSION   KCLJ01000554
VERSION     KCLJ01000554.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 477)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 477)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..477
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="62655cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>477
                     /note="ultra-conserved element locus uce-7676"
BASE COUNT          139 a          103 c          112 g          123 t
ORIGIN      
        1 aatatcagca ggtcacatct tgcttccggt gcatcgggaa ttaggaagcg gcgtcggggc
       61 tgtgcttggt atttaaagca aacaaacctc tctgttaaat gagactcgaa agcaaaaccg
      121 agagcgttaa attaccgatg aagagtccaa aatgttctcg gtttcctaac gaccgtcgtt
      181 atattttgat gtggataata cagcagaggt taaatgaaac atgaaaaagg gctgtacatt
      241 aaaattgaga tcttcagtga agtggaaccc agcagatgta gctgcacact gtaattgctg
      301 cctgtttcct gtcactctga ttaagttgca ttgtccctgc tccaggaatc agtggcttcc
      361 catagggcac agcatgggac aacaggcaaa tgcacctcct gcttgtaatg ctatcatatc
      421 cattgatgac tcctaaaatc aataggctgt gcactgggag aggcactcca ctcaagg
//
LOCUS       KCLJ01000555             686 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 62755cal ultra-conserved element locus
            uce-2126, sequence.
ACCESSION   KCLJ01000555
VERSION     KCLJ01000555.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 686)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 686)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..686
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="62755cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>686
                     /note="ultra-conserved element locus uce-2126"
BASE COUNT          187 a          148 c          128 g          223 t
ORIGIN      
        1 ggaagagtgc tctcccacca cttagacaga aagtttgtgt acacatcctt ccattcacat
       61 ttttttattg ctgtttgcct aggaggaaaa gaatgtgagc agaagtgcat tgcctcccct
      121 ctccttttga tgcatatttc ccataactac ataattttct gccagttacg attgtagacc
      181 cttcagtgtg tgaaacataa tacttccctt gaaaataaag caagtcatct gacaaactgc
      241 gttcctcgtc ttttgtgggt cattcagtga ctttatttta ctgagggaac aaggggaagt
      301 ttataatagg atcagttttg tttgcaattt gtttctaata gatgccaata agccggttaa
      361 ctaggctcta gttaatggaa attttattgt gcttccccct gcagtgcaca tgaccttttc
      421 ttacaagagt ttgtgattct tgaaaacatg tatctgctgc cttgcctcag ggtctgctta
      481 cagcagcagg gatatgacca tgggctctgc tgaacttgtt caccagccct ctgctttgac
      541 tagaccaaaa tactttgatc atcctgtcag tggcaaattt acagcaacat actggcttta
      601 gttccatgtg tatttctcca aatataatat ctccctcaag aaatcaatga taagctgtta
      661 aactaaagag catggtaaca tccaca
//
LOCUS       KCLJ01000556             635 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 62864cal ultra-conserved element locus
            uce-2922, sequence.
ACCESSION   KCLJ01000556
VERSION     KCLJ01000556.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 635)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 635)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..635
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="62864cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>635
                     /note="ultra-conserved element locus uce-2922"
BASE COUNT          227 a          100 c          126 g          182 t
ORIGIN      
        1 ccagaggaaa tgaacacata ttgtgctttt agaccaagta ctgtagcgca attaatctct
       61 gcactgtcct ttcctagcaa cccaaagtag gaaatatatg cagccaaagc taaacagcta
      121 gcaggtttct atatttacaa gaatcaaagc agttaaatga ctcagctgcc tcctaatgtg
      181 ggttatattt gaatttgggg agagtggggg aagaatggaa cattattgct ttaacaaggt
      241 ttactgctaa actgaacata tgttgctcat aatgtcactt tctaaatcaa tgaaattatc
      301 attatagaac atgtcgacaa attagacatg taaagtgcaa gctgtatgtg ggtgagatgt
      361 aatttggctc tataaaaaga aattaaacaa taaaatatca atgacagatg tagttagcta
      421 aaggttttga ggtttaaata ccaatttgtg aaaaaaaatt atgcagaccc tatcagggta
      481 cgagataaaa ataccagcct tcatgcaaca agatgattaa gtatttggac cagatgttca
      541 gagaccttag atgtgccctt tatttaactg gcaagcatac tggcaagtcc ttaaatttgt
      601 aaaatccaag taatgaaggt tagctcagat ggaag
//
LOCUS       KCLJ01000557             436 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 62973cal ultra-conserved element locus
            uce-5172, sequence.
ACCESSION   KCLJ01000557
VERSION     KCLJ01000557.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 436)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 436)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..436
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="62973cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>436
                     /note="ultra-conserved element locus uce-5172"
BASE COUNT          145 a           87 c           71 g          133 t
ORIGIN      
        1 ttttctccaa accttctgag acatgcatgt cctaatgtcc cttttctccc tcctccgcta
       61 ttgctatttt catttgctga caagcccgac attaaacact tgctggagtt ttcatatcga
      121 tagtacgtta tattgccatt actgaacagt ttggggcttt gtggctagct accatgacaa
      181 tagatgcaca gcctggaacc agttttagtt aattagagtc aatcaatcca aactttgcta
      241 acttactcat gtgaaacaat agtataatga accaaagtct gcaagatgat tgggaaacac
      301 aaattattgc accctgataa attaaatgtg actattgcaa aatcttcctt ctaaatgaat
      361 actcagagag agaatgtatg ggtgaataag cataatttaa aataaagaaa aaaaaagaag
      421 ctgttataac cccact
//
LOCUS       KCLJ01000558             673 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 63082cal ultra-conserved element locus
            uce-4521, sequence.
ACCESSION   KCLJ01000558
VERSION     KCLJ01000558.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 673)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 673)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..673
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="63082cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>673
                     /note="ultra-conserved element locus uce-4521"
BASE COUNT          203 a          105 c          135 g          230 t
ORIGIN      
        1 ttaatggtat tcctaatgtg tactgcaaaa atggctggat gcctgttttc cttaaattga
       61 agcatttcct taatctgagg tggttatgga aacttaagtg caaattcact tccatctcgc
      121 atacaatctt atattcatta acataattta atttgtcact tttaagagag ctgtaaatta
      181 gagaatggga aacacttgag ggttccgctg tatgtgctgt ttctgttatg tttaatatgt
      241 tgtaagacat tgtagagttt atctggagct gtttaaaaga aattgtaatg tacaaatgtg
      301 aatagtcact tatctataat atgggtaagt tttgttttgc ctataatagt agatgtttat
      361 aagaaagtga aggacaatgt ttgtcatttc ttgcttgcac aggttgcact attgaaaaat
      421 tgagattgta taaacctgtc cctacaagat aatgatcttg tagatgtcaa ataaaagtta
      481 ttgtactaac aagaagtgga gtcttgttta ggcaatcacc atattccact aacaagtctg
      541 tacaattgga attggacagg acttggcatg ttcctgctct aaccaggctt ctgtcttgca
      601 gcccaaatct ctcggctgaa ctcgctaatg aggcaagagc taaactctgt ttaaggaagg
      661 ctcagttcca gag
//
LOCUS       KCLJ01000559             354 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 63191cal ultra-conserved element locus
            uce-5854, sequence.
ACCESSION   KCLJ01000559
VERSION     KCLJ01000559.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 354)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 354)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..354
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="63191cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>354
                     /note="ultra-conserved element locus uce-5854"
BASE COUNT          129 a           52 c           63 g          110 t
ORIGIN      
        1 aataataata tgacattaag ttaaactatg tcttctggtc cacagtaaca aaaataatat
       61 aacacagttg cagtgcaaca aatcaaacag aataaacaaa tctatactgc acttcatctt
      121 acaggacctg tatcgcccac tctcttcgga tgatatggat tcagtaggag actcagtgta
      181 aaagagaaaa tggaacaatg tttatggttt gtgatttgat gaaggtttaa catttttaaa
      241 gaaaatagct gctaatttac agtaatagtg aatcgcacaa aagagttttg catatttaat
      301 attaacaaca tggggccaaa ttaattctaa cgtgtggggg tattttttgg cttt
//
LOCUS       KCLJ01000560             720 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 63298cal ultra-conserved element locus
            uce-2962, sequence.
ACCESSION   KCLJ01000560
VERSION     KCLJ01000560.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 720)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 720)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..720
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="63298cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>720
                     /note="ultra-conserved element locus uce-2962"
BASE COUNT          175 a          152 c          176 g          217 t
ORIGIN      
        1 aggatcagtt taggagctca gcctcatttc ctggccagat gtaattctgg tgagcattat
       61 tacagtagaa ggctctcctc attcattatg gccctggtcg ggaggcctgc atggcctcac
      121 agaggccagc atgttgcagc tctgggttag cgtgtaaggt tgtgccagtg cagggtgcga
      181 atggacggag cagacagcac agccagctca agcacatgtg cccctgtgtg tgtgaaaaaa
      241 cttaggtgtg cctttctttc taatgaaatg ttgtctttat ttatgagcat gaaattctga
      301 ggaggagctc ttacacttaa atgaacctgt gagcagccca tagaaaagca agtgcctgca
      361 gcgctaataa tgagaactga caaggcgatc ctgctgtgtt tatttatgac cttctgcctt
      421 tgttagctct tgtgagaaat tcctctctaa ccataacaat attgctggag cttggcactg
      481 cactgaggaa tcctacggtg ccccgaggcc gcccactggc acgggtacag ctcgcaacag
      541 attggcatgg ttgttgaaat tttcatatgt tttcccactt aattcatgag gtttcttcct
      601 ttggtacatt tgtttgttcc gacaagcatc cttcagaagt gttttgagat tgcaaagatc
      661 taacttactg attttttttg gtggtctgtc taatgaataa cttaaaggtt gaaatgagct
//
LOCUS       KCLJ01000561             842 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 63411cal ultra-conserved element locus
            uce-4437, sequence.
ACCESSION   KCLJ01000561
VERSION     KCLJ01000561.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 842)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 842)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..842
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="63411cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>842
                     /note="ultra-conserved element locus uce-4437"
BASE COUNT          251 a          195 c          166 g          230 t
ORIGIN      
        1 accagcagca gagatgctag tgtttacaag gaaagtcctt ttaatccctt ttagaccaaa
       61 cctactactt ttatcttcac ctttcaaagg agagatttaa caaaccttat ctctattact
      121 cattactttc agcagaaaga gggactgggt tctacttgaa gacagcttca aagggataaa
      181 caacattgtc aaccatgatc gtttgcttgg accacactgt actgaacatt cattttaaag
      241 cagtggtctt gaaagggttt aaaagagtgt ctagtgaaaa gaatctgaaa agattctgta
      301 cttactcctc ggcctcggcc tctgcctgtt gatggtcctc caaaagcatc atagtttctg
      361 cttccaaatc cactttcagg ataagcaggc gttcctctcc cccgagagcc tacaggtgca
      421 ggcttcatat ggggtgaaga aaaactgctg taggaagagt aactctctct tcctctgtcc
      481 tccataaacc caggcctcaa ttttgaacgg gagtaaggtg cttcccagct agacccgccc
      541 tggtttctac ctccgaaaga gtcaaggcta ttccggtagg agttgtcaaa tcgaccacca
      601 taactacctc cgaagcggct ttgttcgggt tcattataac catagccaga tctgtacaga
      661 tctcgcccac ccagagaaga cccggagtcg taagactcat aaggtccaaa cctggaaaag
      721 ttgcacagtg aggagaaaaa aaagtaagct tactaatgtt atacatttca aaagacaagt
      781 tagcagttga catttatcaa ctaaaatcaa tttattacta tactgatctg tacagttgtg
      841 tt
//
LOCUS       KCLJ01000562             633 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 63525cal ultra-conserved element locus
            uce-1630, sequence.
ACCESSION   KCLJ01000562
VERSION     KCLJ01000562.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 633)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 633)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..633
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="63525cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>633
                     /note="ultra-conserved element locus uce-1630"
BASE COUNT          196 a          123 c          115 g          199 t
ORIGIN      
        1 gtaagctaag tgcattcttt gcttgtaaag ggaaatcact tgctctaagc cagatatctg
       61 acttttgacg gtaattgtca ctgcctggat ttccctttga cagtttggca accctgcacc
      121 tctgttattg tatccacttc tttgtcttgt tttcagccag attaatccat tctgttttga
      181 caagaagact gatgggtaat tgataactgt gatagacaca aacagaagag ttggatgctg
      241 aataattcag tacttttcag tatcaataag agaacaggcg gaagaatttg tgtctctatt
      301 tacacttaac ctaaactaag tcagcccaga catttatgct gccagtctat cagaaaacca
      361 aacagtgtac attcagtttc cacccgacaa aatgttttat aagcttgtaa caatatgtgt
      421 gaagctgcca gaataataaa taggtacagc agcccatgca tgctaatgtt aagttgtaag
      481 cagttttgtt gacaagtgct aatacttctt tcatactatc atcaaaagca gctactacaa
      541 cagccattat ttgctgactt tccaagcaag acatgatgga ttgtgacctt aatatgggtt
      601 agccaacttt tgaaagttaa acaacttgca ata
//
LOCUS       KCLJ01000563             345 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 63631cal ultra-conserved element locus
            uce-7432, sequence.
ACCESSION   KCLJ01000563
VERSION     KCLJ01000563.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 345)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 345)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..345
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="63631cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>345
                     /note="ultra-conserved element locus uce-7432"
BASE COUNT          107 a           49 c           59 g          130 t
ORIGIN      
        1 ttaaagggaa atctatggtc aagtatgcct tgaagttctt caggttcatt aacaaggtca
       61 aaatcaatgt tattttactg tttggaatca tttttggcgg aacaatgaaa agaaaccata
      121 gtagaagtag tcttaatata atcattttct tttcattgtt ctttatggga aaataatttg
      181 gcccgaaatt tagtggtccc atcagggagg tgatatcttt aaaaaggtgg tctgaaggac
      241 aggttttact gtactttaat aggcttatag attaatataa atcttaatat tcataatctg
      301 tactcttcct tttctcaata tctcgttcat ctatacatct atttg
//
LOCUS       KCLJ01000564             728 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 63735cal ultra-conserved element locus
            uce-7984, sequence.
ACCESSION   KCLJ01000564
VERSION     KCLJ01000564.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 728)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 728)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..728
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="63735cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>728
                     /note="ultra-conserved element locus uce-7984"
BASE COUNT          199 a          148 c          181 g          200 t
ORIGIN      
        1 aaaacgttca atatctctat gtttcagggg aagtatcact gagctgatga attttactgt
       61 gaagcataca gcattccctg tattgacagg tggaaaagag tccctggtat gaatctcttg
      121 tgtgtggaaa gggtgaaaag aaggtttcta cagataatac catgacatgt caatgattag
      181 gcagagtatc ccaaaggtta ttttctcatt taaataggta agatctccag ctgaaagtgc
      241 aagcaaaggg ttaaatttcg gggctgtaga agcagattgt gttttccttc tatgatgtgg
      301 gctgacaaga catcagtatt ctattcatct gttgggaatt aggctgttaa tccaatcaat
      361 gactcttgag ctagctgcag cctgcctccc cactggggaa caatcggatc agacaggaga
      421 ttgtttaaga gcacagagcg ctcccggtgt caggtggaat ttccaagcgt tccctagtga
      481 attggggatg ggaaagctgt ctcagcccat ttatcctgcc ccttaaataa gcaggtatct
      541 gcctcagcca tgctaaagtg ataaagcagt acaggagcac taacttttat gcagggaggg
      601 ggcagggaag caccctgaga agagtattag catcctgccc tttggaatat catcctgtcc
      661 attttgccag gggctggctc agccacagca ctgtgacact tgttacaggt ttaggcattg
      721 acttctcc
//
LOCUS       KCLJ01000565             338 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 63844cal ultra-conserved element locus
            uce-4590, sequence.
ACCESSION   KCLJ01000565
VERSION     KCLJ01000565.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 338)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 338)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..338
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="63844cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>338
                     /note="ultra-conserved element locus uce-4590"
BASE COUNT           95 a           65 c           74 g          104 t
ORIGIN      
        1 ggtttgtctg ctttctctgt tgcctggtgg aaaggactgg tgagcacaga cgcccccaaa
       61 aggctgcaca gccactaatt agcatatata ttgtttgtcc tggtacaaat ttatagcaaa
      121 cagcaatatt ttacactcca gtaaagttaa taaatgagga tttaggctat aaaaatttca
      181 tgttcttttg tgcaaaggtc aattataaat agttaagctc agattcatcc aaaagctctg
      241 ggcttcagct agaatgtgtt ttggtcactc tggtgctgga caaatcacag tgcctgagac
      301 acctctctgc aacagtgtag agtggttttg gctctgag
//
LOCUS       KCLJ01000566             704 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 63948cal ultra-conserved element locus
            uce-6649, sequence.
ACCESSION   KCLJ01000566
VERSION     KCLJ01000566.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 704)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 704)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..704
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="63948cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>704
                     /note="ultra-conserved element locus uce-6649"
BASE COUNT          219 a          141 c          112 g          232 t
ORIGIN      
        1 aaaacattta caattttgtc attcttgttt tcacaggggt gtaatgttta cagtataaca
       61 agagctatga gtcatttaaa aatatgtaat atcctttgca tatcacagat acttttctca
      121 tgaataagga acttttcact gtaagaagac ttttatacga ctccagcgct atttccaggc
      181 taaatttact gtaaagagag agattttgca tctgcctatg acagttctcc agtgtattga
      241 ggtcagcttc cattctcctt gtctctgatg cctgcctgta taaacacaaa ttccatttcc
      301 atcctattat ttttctaatc aagggtttgt catgcaaaag aagatctgag gtgactgtgt
      361 tttccattat gcaaaacatt ccattatgat aatatcttca ggatagtctt ataaaggtgc
      421 cctgcccaaa gacatcacaa atgagagcac taaaatggta gacaaatcct gcataatttg
      481 ccctctcatt taacattcag gccacagagt tcaccctaat ttgccataca catttcctct
      541 gacatcctcg atctgtacat atggtaaaaa taagaattgg cagctttcac tgaatagatt
      601 tctgttaagt gcttatcaaa agaagaagaa aggggctgta aaatgcagtc atatttagta
      661 catccttcgt tgctttctct gctaaactca cacttagtaa aatc
//
LOCUS       KCLJ01000567             614 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 64059cal ultra-conserved element locus
            uce-3813, sequence.
ACCESSION   KCLJ01000567
VERSION     KCLJ01000567.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 614)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 614)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..614
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="64059cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>614
                     /note="ultra-conserved element locus uce-3813"
BASE COUNT          201 a          123 c          123 g          167 t
ORIGIN      
        1 tttcacaaga gagtccccat tgcgtaagct tcttgctttc aggtaatgcc tatttcatct
       61 cctgtaaaga cacacatgaa aaaagggctg gcattagcca catatccata aaagcctagt
      121 agccaagagt attatcttta ttcagaagaa gtatagcact tttaaggttc agaaacatat
      181 ataaaaattg ggttctgaaa tggtcacccc tgtgctatgc cattatagcg atcagccaag
      241 cttctgcaag gtaaatactt ttggaaaata agtggaaatt tgctgcaaat cagtcccttt
      301 tgtgcatggc cacaggagca tgttgaaatg tttggacact aatacccatt cattttcttg
      361 gctccataaa taaaagccgc cagctatgtg gcggccgtga aatggtattc ttcaggaccc
      421 agcaggaagc cccatcctta ttaccactgc agggggcagg acaggcccaa aatagcaaga
      481 caactaaatc aagacatttt caatgtctaa caaaatgact gtggtttaga gagaagcaaa
      541 aggttggaat tggacagctt ttatacttag cataatacct ttgttaaaag agttcagata
      601 agaaaatcag atct
//
LOCUS       KCLJ01000568             399 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 64171cal ultra-conserved element locus
            uce-3529, sequence.
ACCESSION   KCLJ01000568
VERSION     KCLJ01000568.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 399)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 399)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..399
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="64171cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>399
                     /note="ultra-conserved element locus uce-3529"
BASE COUNT          105 a           82 c           86 g          126 t
ORIGIN      
        1 actcaggaat tctcagcagc tgcctgggaa caactgccag gagattaaca ggcattttgc
       61 acagagtttt ctctttatag agtttcaaag atttatgact acattacagc tacctggaaa
      121 gagacgttga ggttgaacca taagttgaca ggctttaaag aaaaagttaa ttcctatttt
      181 cttttaccca caggtctacc cacggatagc gccggcattt tggcactacc tgcgggtaga
      241 agtgagtagc gggtatttga atactcccac atctttattt tgcagcttgg tagtgtttcc
      301 tgacctcctt ttgtccattg tgctaatgag cttccattct tcttctgtga atgtagtaat
      361 tcatgctggg gttactaacc caatatgcag ggttaaaga
//
LOCUS       KCLJ01000569             329 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 64273cal ultra-conserved element locus
            uce-3588, sequence.
ACCESSION   KCLJ01000569
VERSION     KCLJ01000569.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 329)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 329)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..329
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="64273cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>329
                     /note="ultra-conserved element locus uce-3588"
BASE COUNT          101 a           74 c           70 g           84 t
ORIGIN      
        1 gctgtctccc cctactgagc tggtgtttaa atcctgcagt ctcaatgtaa ttcttttctc
       61 cacataaaga tacattcaca gtagactcac cattggcgtc ttgtacttgt ggctcaccac
      121 ttctttagtt tcaggaacta aaaccggacg ggcaagagac aaaacaaaaa gttcaaaaaa
      181 cgagaggcaa atggggaaga aatagcacaa tgttcccatg ggaaagggaa gggaggcaga
      241 cagacagcag gtgcaggtac agggcacttc tcacttctac atgcttctac ttcttttcat
      301 ttacatatat ccttggaaga cactggtaa
//
LOCUS       KCLJ01000570             596 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 64379cal ultra-conserved element locus
            uce-685, sequence.
ACCESSION   KCLJ01000570
VERSION     KCLJ01000570.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 596)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 596)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..596
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="64379cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>596
                     /note="ultra-conserved element locus uce-685"
BASE COUNT          171 a          121 c          121 g          183 t
ORIGIN      
        1 tctgtgtttt gaggggcctt ctgcataaac aaagccagcc gccagttact aaagactgtg
       61 tagcttctct ctctcttacc tttacctgta catctgtcca tctatttctc atctattttt
      121 acatttcatt atgctgtgct tgctctccag ctctcttctt ttcctttcct gaagacacat
      181 ttctatctgg cacagaaaat aaactcagat tgcgggtagt tatgttaatc taattcaatc
      241 ctctgtgggc taggagtgaa attctaatag tggagctgtt gagggctttt ttgttaatgg
      301 cttggggatt acattgagtt aaaggctcat ttcctaatca aacagagagg gagagagtga
      361 ctccgaatat ttatgagtct cccagcgaga gttaaacatt gaactccaaa agcaggattt
      421 cagtgctgca agaaagagtt aaaacccctc agggctgctg tggagaggga ggaaaccagt
      481 taagccatca gcattttcaa ctgctgtata acttcagaaa taatcatctc acgagctaaa
      541 atggaaactg tagcaagata tttaaaacaa agtcaagtga tgcttcaaaa aggctc
//
LOCUS       KCLJ01000571             491 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 64490cal ultra-conserved element locus
            uce-294, sequence.
ACCESSION   KCLJ01000571
VERSION     KCLJ01000571.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 491)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 491)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..491
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="64490cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>491
                     /note="ultra-conserved element locus uce-294"
BASE COUNT          153 a           83 c           95 g          160 t
ORIGIN      
        1 tttgtttcat tgtcagtagc actctggggt tatttgaagc acttatttat gcactgtaag
       61 cagaacaata ctgaagaaga aatgattaaa taccagctct ctgagcaata gacatctcat
      121 tgtggcaggc ctagactcac cactgggtgg ttttgataaa ggcaatatga gttgataact
      181 gatacagttt gccagggagt catctgggga tgctgacagc tactatgctt taataaaatc
      241 attagaatgt aaatgttttt attgcaaaat aaagagcctc cagcaaagtt gacactatcg
      301 ctgctccctc cactgaatga aagcaccgat tagcattcaa atgatataat gatagtctgg
      361 ttatctttat taaaattttt caaatcgagt cttcattttg catgattgag ttttaaacaa
      421 atgcaatatt cagtaggctg gtgagccagt ctgaacactc ttgaaataat taaagtgtgc
      481 cttttatttt t
//
LOCUS       KCLJ01000572             629 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 64596cal ultra-conserved element locus
            uce-115, sequence.
ACCESSION   KCLJ01000572
VERSION     KCLJ01000572.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 629)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 629)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..629
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="64596cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>629
                     /note="ultra-conserved element locus uce-115"
BASE COUNT          174 a          134 c          141 g          180 t
ORIGIN      
        1 cttttgtgtt tctcccacta cctggaaatg tttttctgaa gatataccca tcaccagtga
       61 atactttgta gacctcatga ttcccatagg ccctccaacc ctttcttgtt tctaatttca
      121 aaggcccttt tgagtgggaa acaaaaggtt aattttctcc agcttgccca ggctgactta
      181 atgtaacaga aggcagcaaa ttgtattgat ttagtgacat gcaactgtcc agaaagagct
      241 atttatacat tattcaggac aaacactgtc ataatggaca aacagcagca gcatctggga
      301 tgttaatgtc tacaaataag attattcttt gaaaggatta ggacgaagca ttttgtgtaa
      361 ttagatttct cagttttagg aatgaattgc cttttagcag taaaagctgt cactgaggga
      421 gccattagct ccttataact gaattaaatg cataattagt gacatgatcg cattaggatt
      481 tgtttcattt ttaactaacc caggggcagg tcagcacagc cctcctcggc agggcccggc
      541 ctcagctggc gagccggagt tgggaaaagt caggcgcgtg tgaacgggag ccgaggcctc
      601 ggcacggagc tcgcggggct attcatcac
//
LOCUS       KCLJ01000573             391 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 64817cal ultra-conserved element locus
            uce-771, sequence.
ACCESSION   KCLJ01000573
VERSION     KCLJ01000573.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 391)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 391)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..391
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="64817cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>391
                     /note="ultra-conserved element locus uce-771"
BASE COUNT          137 a           76 c           69 g          109 t
ORIGIN      
        1 attttcagtg taataagccc aaatgtgtga aatgtgtaaa tctaaactag gtatacacag
       61 aattccatgc catgctatca ggctacacca attatgacag agacagaaaa gaaaacataa
      121 ggccagtagc atagctcatt tttattgttt aaacagtttt tgcataggaa atatatccgc
      181 ttccagtaat tgactgcagt atgagcagct gctagcagta taggctggat ataacagtaa
      241 caatcacatt aagtcaagct tgatttacac cagtttaaaa cttgtggcag ttgagttcat
      301 ttgtaaccta cactttatcc tccaaccagg cacaataaaa attaacactc aggctaaaat
      361 caggtctgat gccagagggc tctaattcca a
//
LOCUS       KCLJ01000574             721 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 64923cal ultra-conserved element locus
            uce-3031, sequence.
ACCESSION   KCLJ01000574
VERSION     KCLJ01000574.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 721)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 721)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..721
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="64923cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>721
                     /note="ultra-conserved element locus uce-3031"
BASE COUNT          258 a          135 c          106 g          222 t
ORIGIN      
        1 aaagctttat ataacctgcc tatttggcct ttgttagtca tgctacaaag acttagaagc
       61 tttgaagatt gtcttaacta aatagagcca caagaacaac attgcacttt cttccagtca
      121 ctgatcaggc ttctaaaaag tagctaataa tgtggatttt aaagtgcaaa aagcaacatg
      181 aaaatattta atagtagaac taacagcaca gcataccttc tgcagaaacc tgtctgcttt
      241 actttccttt tatcaatatt gccaagaaag taaatttgtc actgcacagt tgaaaatatc
      301 tcaaagatct actttaatgt ttcacgctac gtttgcaaaa caagagtaat aaaaataatg
      361 acaccattat tactcttccc tctttgtttt cagttcatca cttgcatatt tgaataatga
      421 attatattca cattatctct acacttttgc tcttgacttc ctctgctggc tgaaagtaaa
      481 gctattatcc agttgtcagc tctgaagagc cattcaacaa agcagccaat ggtactgaca
      541 tgtagatata ctactatgca aaattatcta gagtacaatt tcaagctata tatgagaaaa
      601 ttaccagcca gcataaaaat gaatcttcag ctaaggtgaa atattaaaaa attcatcagg
      661 gccactttag aacataaata agtagacaac agaattagtt gtgaattagg cacaaaaggc
      721 t
//
LOCUS       KCLJ01000575             812 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 65035cal ultra-conserved element locus
            uce-7836, sequence.
ACCESSION   KCLJ01000575
VERSION     KCLJ01000575.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 812)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 812)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..812
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="65035cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>812
                     /note="ultra-conserved element locus uce-7836"
BASE COUNT          275 a          184 c          141 g          212 t
ORIGIN      
        1 gccacaagca caatagcccc actcttttta actaagcaaa tcctagagag agcagttttc
       61 ccccaaaatc ttagcatcag tgacaaattc agtgaactga tgtctcaaag tgttcacgaa
      121 agatgtggga aatttgcaga ggggcacgag cttttaattt caaagagaaa tgttttcatt
      181 gtaaaaaatg agagtgtgaa aaaatcctaa cacacaatag ccctctttca agtataaagt
      241 tcagaattac atctcccaag tttcctgtat gttaaaagaa gaacacataa taatgatcta
      301 aaaatccttc acaaaaaacc aacaagcaag gatgaagcag tactcgcctg ggggccaatt
      361 gcctctccag cagcggtaag gctgttacta ggcttgcagt accatttgtt ccattacaca
      421 atctcctgaa gccttttaca gagagctaaa acaactgcct gtaccaacac gacacatggc
      481 tttccatccc gactctttgc taatccagac gctccaacca tctttcttta agatgccata
      541 tggttggcag aagcctgtag atctagcagc acatctgctt gtatgttact tctcccctcc
      601 aactcccccc tccacaccac aaaagagaga gcaaataatt attttacatg taaccaatta
      661 aactgcattt aaagaagata gggattattt agctctagat agattgtcac agaagatcat
      721 ttgtctctca gtgatttggg aaatacagtg aaacaaaaca aagaaatgaa aggcacatgg
      781 gccctgcatt tgaattattt aaatgactgc ca
//
LOCUS       KCLJ01000576             767 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 65144cal ultra-conserved element locus
            uce-7844, sequence.
ACCESSION   KCLJ01000576
VERSION     KCLJ01000576.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 767)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 767)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..767
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="65144cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>767
                     /note="ultra-conserved element locus uce-7844"
BASE COUNT          207 a          165 c          161 g          234 t
ORIGIN      
        1 agtatttata gttattgtct ggttatttta cacaggtatg tcctggctta tggaaatctc
       61 ccttagcagc accactgtca ttcaggattt gcagaaacag ccttctatta tttggtgtgg
      121 tttggtttct gaagggcagg ctgtagacac aaacaagaga cgtagccctc agaaacattc
      181 atgcagcatc cttcaggaag ggaggggagg ttatccaagt ctccatgctg ctgtactcat
      241 ataaatgctc cctcttttgt tgctgctgga ctccaaagaa taaaaccaaa acacaaagcg
      301 aaggcagcac cactgagcaa atgccacagt gttcccttaa tccatgtgga tcaaaaaaca
      361 tgaacgtttt gattctgtaa agaatcttcc tcagcatgct ggattaatca catggattaa
      421 taaaacactg ttgcactcac tcagtggtgc ctcttctgct ttgtgttttc ttttattatt
      481 cttaggagcc ctgcaggaac aaaagacggc gtgtttataa gagtaccata ggcactggga
      541 attctataaa cctctctctc tataaggtat gctcgatcat acactgcaga tttgctaaac
      601 tctgtactac tgtccctatc tgcctgaaat acactcaatt taaacccatt tcattgtgtt
      661 tctctttagt tctgcagagt gtggcaggga gcacatgtgg aatgctctca tcttggagca
      721 aatacttttg tgtatcattt cagtcacggt agagctggtg ggcaggg
//
LOCUS       KCLJ01000577             668 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 65255cal ultra-conserved element locus
            uce-3806, sequence.
ACCESSION   KCLJ01000577
VERSION     KCLJ01000577.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 668)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 668)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..668
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="65255cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>668
                     /note="ultra-conserved element locus uce-3806"
BASE COUNT          193 a          147 c          169 g          159 t
ORIGIN      
        1 aattaagaaa aagccttcat ggactgtgtt gtcaagctat tggaaaacca aatttctggc
       61 tcctgcgaca catcccaagt ggagaagcag ccagctccca gtcccccaaa ctgctgccct
      121 tcagaaggtg ctctgtgtgt gtatgtgcct gagtgagaga catctgcatt ccttttctgt
      181 tcacccagcc acagagcaca aatctacttt gacactttta gaaaaatgaa aagatggaat
      241 ctcgcaggag cctgcctgtg ccgaggaggg gagcacgcac agcaggaggg aagttgactt
      301 ttctttatac atatagggtt ttttccatgc agagtttaaa ttatgcctga taaaaggagt
      361 ttcgtggatg tttcagttct ttcaaaccct cctggcttcc tcccaattaa atgaggtttg
      421 tcaaagccac agggctctgc tgctgccaga gaggcggaca agcacttccc gcagtgacat
      481 ctccaatccc caagggagaa gatgaaagtg tcagtgctga gagagagaga aaaaacaggt
      541 acagagacag acagtgtgag agaaagggag agagtgagga gaaagagaag aacagattgg
      601 cataatgtgt caatctctct gccagtgagg gggcagattc ctttcacctg ggtaccatcc
      661 catattta
//
LOCUS       KCLJ01000578             842 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 65362cal ultra-conserved element locus
            uce-4993, sequence.
ACCESSION   KCLJ01000578
VERSION     KCLJ01000578.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 842)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 842)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..842
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="65362cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>842
                     /note="ultra-conserved element locus uce-4993"
BASE COUNT          240 a          176 c          140 g          286 t
ORIGIN      
        1 ccattgtgaa gcattgcact tttggaaaat atagcccacc aatttcgtgg taaacaagcc
       61 ttggctttaa gacaaagctt attttaatct ccatgatcag gctacagatc tgaccatgtt
      121 ttttaacaaa cctcttatga agaaatccta ttcatgatta ttatctatat gagaataaaa
      181 atgtctaatt accttatatt aaatctgtat ttatcaattg tggttttctc tgggaaatta
      241 taatttgcag aaatgctcca cattccaggc tgtaacagtt ggaggtggat gtccttaagg
      301 atggaaaaaa agttcttttt taaatggcac atttactaat tataaaatgc tcttatctct
      361 ctgcagccaa agccaaaatg aacatgtgcc ttgcactaag aaatcccagg attgtcacaa
      421 cttgtgccag ctgttgaggt tatgacacct gtgccagcat cgccagctct gcccactgtc
      481 atctgttcca actgttccat ctgcactgtt tgtaccaatt ctcccatttc tgcatctgta
      541 ccttctgcag aaacgagtcc aacaatgcca gctgtgtcat tggtgccaaa tatgccagat
      601 gttctatttg tccaccctgg gccaaatcaa tgtagttttg tgctcattag ttttagctgg
      661 tagattctat ttcacaattt tttgagatgc acttagatcg aatcaattct aaatcaccac
      721 tacaactgct ttacatctat ctcgccataa acagaacttt gtttgtcatc cagtgtttgg
      781 tcaaaattat tttaacccta ttaagttgca tgtgatgatt tgaattctgt catgacgaga
      841 tt
//
LOCUS       KCLJ01000579             759 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 65474cal ultra-conserved element locus
            uce-1768, sequence.
ACCESSION   KCLJ01000579
VERSION     KCLJ01000579.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 759)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 759)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..759
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="65474cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>759
                     /note="ultra-conserved element locus uce-1768"
BASE COUNT          214 a          132 c          159 g          254 t
ORIGIN      
        1 gtgacagacc cttaactata gtagcatgaa cagcactgct ataattcctg ggtgaacttt
       61 gtccctggat gtgtgttttt ggagtgtgcc ggggtgacat tcagcctcta cattcatttt
      121 tatgataatt cagagtaaat tgtggtgcaa taaactcttc aagcctgtct ttcttgtgaa
      181 agccatgaat caatcagctg caggcttttt tgggtctttt caatgtatag tgatcattta
      241 gatttgacat gcattgtgag accttggctt agctcctctc tatggtctgt cattaattcc
      301 agcctttact gttctgaagt acagtgaagg atgactgaga aatcattgcc cctcttcagc
      361 tctgttattg cacaaaatag cagcgcaata attttttgtc aatgttttac tctaaaagct
      421 ttctacatca gttttgaaaa ggaagcaata aagcccattc aatggtatga ataaaaatcc
      481 tttgaggttt aggcgcaggg ctgcttttct tcagctggta atcaaattgg agctaaaatg
      541 aaattgagtt ttcttatgaa aatagccttt gttgctggga aggctggtaa ttcataaaca
      601 ataacctgct cttttgtgtg gataataata tattcatgtt ctttcaatag ggtaaaagcc
      661 agacctagtg cattatggta cagtaaaaat agcagaagga gcttgctgga ataatcttga
      721 agaagagatg tagcattcgg tgacttaagc tttcagctc
//
LOCUS       KCLJ01000580             521 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 65585cal ultra-conserved element locus
            uce-2965, sequence.
ACCESSION   KCLJ01000580
VERSION     KCLJ01000580.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 521)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 521)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..521
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="65585cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>521
                     /note="ultra-conserved element locus uce-2965"
BASE COUNT          148 a           88 c          108 g          177 t
ORIGIN      
        1 taattttata gaggtctact gaagttctgt tatttccaaa gtgttaaaaa tactcagttt
       61 gctaatataa atgattacaa ttgacagtgc attgtcaatc tattgcaaag ctgatttaat
      121 taagaatgcc aaggggcatc atttggggcc aggtatctga gctgcaaatt tttttttgat
      181 ctcaacctct ccctatagga ccgtccacac tggcaccaaa ggctggaggg caagagaaca
      241 aagggaattt tatgtgtctg aattcaaatt ctttcccttt gaaatgaagc gtccagaatg
      301 ggcaataaaa ctgtgaaaat ggatttctgg ccgcatttga tgttaagcct ttagtgtcaa
      361 gagccaggtc ctctctcttt ccctgaatgg tcttgtgggg aatttgtcct ataaattatt
      421 tcttgcagtt tgtatgcata cagtatggcc ttgtctcaaa agtaggctat tttgtgtgtg
      481 ttttaattaa cttgtgtttc ctgtaaaagt gcaatagaaa a
//
LOCUS       KCLJ01000581             507 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 65690cal ultra-conserved element locus
            uce-4009, sequence.
ACCESSION   KCLJ01000581
VERSION     KCLJ01000581.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 507)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 507)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..507
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="65690cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>507
                     /note="ultra-conserved element locus uce-4009"
BASE COUNT          174 a          105 c           73 g          155 t
ORIGIN      
        1 ataagattac taagctacac gtaaaagcca aatgtgcata gaagggttta caaacaaatg
       61 ctgaaaacac aatttcaaga aaaatttgca aaaatagcaa agtaagataa ttacctatct
      121 ccctttggtt ttcttttttg tactgtcttc cctttgggtc gtctttcact tcctaaacag
      181 gggctcccac cagggcctgt tacccgtatt gattcaaggc ctttggaaga tttcttaaaa
      241 gtaaattcca caggttctcc ttcttttagg cttctaaatc cttccatgta aagcttgctc
      301 tgtaaatagg aaaaacacta ttaaaaacag tatttacatt taaaatcaac aggacaaatt
      361 accccatgta ccatcctaca acacatacaa gtagtttcct ctgcatgagc tgtagcagaa
      421 aattatagtc ctggataaca ctaaacaagt aaaaataacc tattttcagt cagcaaaact
      481 gaaataacat tttccttttc tgtgatg
//
LOCUS       KCLJ01000582             418 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 65795cal ultra-conserved element locus
            uce-7197, sequence.
ACCESSION   KCLJ01000582
VERSION     KCLJ01000582.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 418)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 418)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..418
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="65795cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>418
                     /note="ultra-conserved element locus uce-7197"
BASE COUNT           86 a          110 c           96 g          126 t
ORIGIN      
        1 ccccagtttg gagctttagg ctttctagtg aaggtggcca caaacaggtg cgtgcttcac
       61 agagggtctc attctgcagc tcccactggc atccctggcc tcctgaactc ccttttgcta
      121 cctccttccc ccttttttat gaatgatagc ttttcagaac agcctgttgg gaagaacact
      181 ctttgtgggg tcaaatccta cacatttctc ttttctgtga aagggccggc tctgtgctgc
      241 aggtatgacg tgcgtgcgga cccccctccc tgctgcttgt gataaatctg ctttttaatc
      301 tctcaccaca ggtgcttctc aattaaaatc cactttgttt aaaaactgca ggcttgttta
      361 actgagcccc tggggagagt tgtcagatcc caggataggt gacacaaatg gattggtg
//
LOCUS       KCLJ01000583             753 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 65904cal ultra-conserved element locus
            uce-1209, sequence.
ACCESSION   KCLJ01000583
VERSION     KCLJ01000583.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 753)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 753)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..753
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="65904cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>753
                     /note="ultra-conserved element locus uce-1209"
BASE COUNT          238 a          150 c          110 g          255 t
ORIGIN      
        1 aaaaggcctc caaattagga tactgcttca ttaagctttt gacatttgtc cagttaaaac
       61 tattgactca tactttcgtt tcttccccct caaattacta cagtgccaca gctgatctaa
      121 ctatattttc catttcttat aaatagccac aagaaaagta ttaattatcc ttgtacgatt
      181 taatgcacca actgccttaa cctttcaggt ttccttaaac accagcataa caaggcatat
      241 ccatggcagc aaatgtgatt tatgacagga atctttaatt tctgttttta aatatgttac
      301 ccaccgatct gcatacattt aaattcgcct gcaacacttt tctctgtctt gaggctgttg
      361 tttaatattc aaggatgatt tttgtccaca tacattttgg tctatgtcac ctcagattaa
      421 attattactg tttgcagcct ttttggagca ggcctcaggc ccttatttac aagaatcaat
      481 gaaacagtaa tgaaaatcca tttttcatac tatcagctct ggcctgcttt tatttagtta
      541 gctgtgtcta agcaagcaat tcattttgtg caaatgtcac gttgataaaa caggacgagc
      601 caccaaaggg ttaatcatga aataaagcct ctgctttagc aaagcacatc tgtaatggca
      661 aaattaaaaa aatattttct taatgcatgc aaagtaatgt atattgacac ataagcaagc
      721 cttttcatga tgaatattga aatatatatg caa
//
LOCUS       KCLJ01000584             554 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 66017cal ultra-conserved element locus
            uce-7488, sequence.
ACCESSION   KCLJ01000584
VERSION     KCLJ01000584.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 554)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 554)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..554
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="66017cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>554
                     /note="ultra-conserved element locus uce-7488"
BASE COUNT          163 a          136 c          110 g          145 t
ORIGIN      
        1 aggccaccaa ttctgaatga caaataggca aaggagaatg catctccttc caacacagaa
       61 cagccttaac aaaaagcccg aggatccatt ttgtcatgaa ggagaatatg caagacaaat
      121 tgttctgtgt ctcagtaaaa gacacaggca atcacaaata attctaaatc ttatctagtt
      181 gaaaactgac cttccttagc ttgaaactgc ctgtaggagt cccaggacag gttgttctga
      241 cattctttta acatcgtttc atcagcacag ccaaaactaa tcacaagaat attacccgat
      301 gacaggtgca tttattctgt caattaaatc agatggttaa atcgaaatgt gccccaaatc
      361 tctcttgttt gcattatcca tattggcatt tcttggctgt ggttcattgc tgcctggaag
      421 tcatccagcc cccgcagagt cactttgcag tcctgtgcca gagtttgcag gctctgcaag
      481 ctgcagcgag gccgcagcga tcctgcagga ctgacccaca gagctccact gctccaccaa
      541 ggtttagtta agac
//
LOCUS       KCLJ01000585             403 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 66125cal ultra-conserved element locus
            uce-1245, sequence.
ACCESSION   KCLJ01000585
VERSION     KCLJ01000585.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 403)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 403)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..403
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="66125cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>403
                     /note="ultra-conserved element locus uce-1245"
BASE COUNT          136 a           80 c           73 g          114 t
ORIGIN      
        1 ttttttttgc ataatattta cctcaagctt gcttcaggct aatgtctcaa taatttccac
       61 tcctttctca ggtccttacc acaaaggact tgactaatga tccatggaca aaatgaagca
      121 tttaaattta ttcattaatc attcatctcc agctcattga aaactttaaa cttccacaaa
      181 attaagatag aacattgagg agtgattgag ggagacagct ctcagagagc gaaaaaagac
      241 tggtaaacac aaaaacaaaa gtacattaga cagtgtgtct gcacatgggc ataggtattg
      301 ttccagttta cataaacttt aagtactgaa ttgcaaagcc tttatttggg ccaacacagt
      361 ggggaaatct ggggaagcgt acagtcactg tcaacaccgc cag
//
LOCUS       KCLJ01000586             463 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 66237cal ultra-conserved element locus
            uce-6610, sequence.
ACCESSION   KCLJ01000586
VERSION     KCLJ01000586.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 463)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 463)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..463
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="66237cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>463
                     /note="ultra-conserved element locus uce-6610"
BASE COUNT          142 a          108 c           74 g          139 t
ORIGIN      
        1 tctctggaca gtgtttcact cgtggccatc tcggtgcagg agggctcagg ctccgtgtgg
       61 gaatgctgtc tcccacatgg ctccactgaa ctcatcctta acgatctatc cccgcttacc
      121 taacttcaac gctatttttc ctgagaccgc attaatgaat ccaataaata aagcattgta
      181 tcacccatgc agtatagaca ttaatttcag agcaaaacat taatcaattt aaatttatgt
      241 actaatgcag acacaatcaa tttgaacttc ttatgacaat taacaaagct ttggctacat
      301 ccctaaaaca cactgatcca tcaattatgg tttgcatcaa actaatgcta atggtacttc
      361 cttcttcctt aggctgtcag cagcctatct gattggtcaa cttcaatgca gcagatcaat
      421 taatataaat tatacatgca cggaaagatg ggttaatatc ata
//
LOCUS       KCLJ01000587             545 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 66341cal ultra-conserved element locus
            uce-5340, sequence.
ACCESSION   KCLJ01000587
VERSION     KCLJ01000587.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 545)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 545)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..545
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="66341cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>545
                     /note="ultra-conserved element locus uce-5340"
BASE COUNT          160 a           98 c          102 g          185 t
ORIGIN      
        1 ttttcctaaa cagcaatgtt gtcaaatctc atactggaag ttacagagat aagcagtcat
       61 ttaatttatt atttaatttt aacctcccac attatataaa cttgatttct gtattgtagc
      121 cttaattgtt agtttgtgtt ggtttaatct ctcttattta agtatgtttg ctttaataat
      181 attctaagac aaagaaactg tagattagag actttatttt cagggtaaaa tgatacggat
      241 aagtgagcgt caactgacca gaaattattt gcttctgtct gttagacacg taatggagtc
      301 atttaactag tcaaattagg agctgtagaa atgcaccatg cttcattact gagttcgaat
      361 gggcaccatt ttacatttac gtcaaaaatt atctcatagc aaattaatgt tttcattgtg
      421 tggggaagcg ggagctgtgc agtatcagca ccacctagag gatgcgacac agatggcttg
      481 gagatgctgg tcacaaaagt acttccaacc tgccttcccc agactagccc tgtgcctcgt
      541 tctct
//
LOCUS       KCLJ01000588             579 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 66449cal ultra-conserved element locus
            uce-5722, sequence.
ACCESSION   KCLJ01000588
VERSION     KCLJ01000588.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 579)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 579)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..579
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="66449cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>579
                     /note="ultra-conserved element locus uce-5722"
BASE COUNT          170 a          101 c           81 g          227 t
ORIGIN      
        1 tttttaacag ttatagcaat ggaagtatgt gagtagttac ataaccttgg taaaatttta
       61 atatggacat tttttcttag cttcttttcc tttaaaaatg agaatataaa aaaggtggcc
      121 cccaaaataa atgaaactca atttcacggc acattatccc tctcaattct ttcctctcag
      181 ctttcatttt cattaaaatc acagacaacc ataaattaat aattacttca ggttgactaa
      241 atgcaggcca cagtatttag ctctcgtttt cctacagtgg cccttcttgt tcatgctgga
      301 aaaatgttaa tttagataat gtggtttgcc ccttgtcata taattctgtt ttgcagtttc
      361 actgatctat aatggtctct tctgattagg tagtattaac tttatctttt gttcaatcaa
      421 gctttacagt ttcttctgac tagataagta ttgtgaaata tcagatgaaa tgttctatta
      481 tctatatttc tgttatattt tgattcatct ccatgttgta acagtgttca gcaacatttg
      541 taatttcttc cagtaataaa tttattggcc attagccca
//
LOCUS       KCLJ01000589             372 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 66558cal ultra-conserved element locus
            uce-5971, sequence.
ACCESSION   KCLJ01000589
VERSION     KCLJ01000589.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 372)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 372)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..372
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="66558cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>372
                     /note="ultra-conserved element locus uce-5971"
BASE COUNT          107 a           59 c           65 g          141 t
ORIGIN      
        1 attcattttt aaagaccagc ctgtataaac agtattgcat tttggtttgt tgattgataa
       61 ttaaggagaa ttatatctgt actcagtgta catttaaaaa gttgttacat agttagtgtt
      121 aaaaagtaat atttggatca atgcctccta tggatttttg tagattttct cctcactgag
      181 gcatgcagtc aatacctaat ttctctggag atttactgca cttaacatat tgaggttctt
      241 ttaaatactc cagtcctgtg cattgagtgt gtaagcccag ttttaatttg ctatcattga
      301 tgaacataag agtatgaagt atctatgctg aattccctcc agcatatatt tgtgtttgcc
      361 atcgattcca ag
//
LOCUS       KCLJ01000590             618 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 66656cal ultra-conserved element locus
            uce-5095, sequence.
ACCESSION   KCLJ01000590
VERSION     KCLJ01000590.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 618)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 618)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..618
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="66656cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>618
                     /note="ultra-conserved element locus uce-5095"
BASE COUNT          207 a           92 c          103 g          216 t
ORIGIN      
        1 aaaatcattt tgatgcatta tgaattacct gtaaaagaat aagtaagtga ggacattctc
       61 aattttggta aatatttata gagccaaaca atatgaagta tatgtaacaa tcaaatttct
      121 agtgaaaatg tgtgcaagaa ggtttatttt gaaaggaaaa ttcctactcc cagtgtcata
      181 cccaattaaa ttctccaggt aatgacccca tttgcataga gagctgaacc cacaagtggg
      241 aattttaatg ggcacagcac ctgagtacat taattgagag tgacactact tgaactagtt
      301 ttgtgcttac cccactgaaa attctactca tattattttt aatgtcaagc tacaagtcaa
      361 atttcaagat gatggatttg ttctttttta agcattgaat ttgaataaaa ggcggcttta
      421 attctgttat gcattgcata gctttaacta atatgtagtt ctgattctca cccagtgatt
      481 ggaatttaat tttattcatt aatttgcaaa taattagata gaaaataatg ccttctgtgg
      541 ctaaattgtt tctggatcgc tgtttaatgt actttaacca gaatatgtgt tacagttaag
      601 ctgacataat agtttact
//
LOCUS       KCLJ01000591             526 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 66764cal ultra-conserved element locus
            uce-7025, sequence.
ACCESSION   KCLJ01000591
VERSION     KCLJ01000591.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 526)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 526)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..526
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="66764cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>526
                     /note="ultra-conserved element locus uce-7025"
BASE COUNT          149 a          117 c           64 g          196 t
ORIGIN      
        1 ttttctctgt ccttaaatcc cataattgtt ttattgctac attaaaaagt gtaaataatc
       61 attccccctc cctgtaataa attagacgca acctgtctag ctctgaaaat taacatttca
      121 atatcttcag tcacacaatg acatcatatc aatatttaaa atcattttat gcatgtattc
      181 caggttgtcc aacttcatta ggggcattca tcagccctcc ggctacagtg tattcccatt
      241 ggagttgtag gcctcaggcc ctaccaaaca gaaatttaaa ctaacttgcc tttttaattc
      301 acattattct caaatattct cttttttaac cccctgccat gactaaggtg tttagacctg
      361 gctatgattt tgtgtgcatc aacatttaac tttttatgtc agagtacatg taaataattt
      421 ctcctttaat ttccctcctc ttctcccatc catcactatt ttctgagtgc agtaataact
      481 gtacttttaa tgttctatac taacttaatt tgagatacag gttgat
//
LOCUS       KCLJ01000592             393 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 66872cal ultra-conserved element locus
            uce-3999, sequence.
ACCESSION   KCLJ01000592
VERSION     KCLJ01000592.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 393)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 393)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..393
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="66872cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>393
                     /note="ultra-conserved element locus uce-3999"
BASE COUNT          102 a          109 c           81 g          101 t
ORIGIN      
        1 cgctgtaagg agattaaagt gacataaacg tcccgagtgg gaggagggag ggcagagaat
       61 tcaggtcacc cccatccgtc ccccatttga cagccgctat atcgctatcc aatccaataa
      121 aaaaatcccc cccttttgct ttaattaatt ttacagctag cttgcttaat tactttcaat
      181 caaaatcctc ctgccatcgc aaaattagag atggttgagc tccattagcc taaattcttc
      241 atttccatat agaaagaggc tccctgggca aagccaacag ggctccctcc tattctggct
      301 gccaccggac agatgcctgt ccctctgtct gtcttcagct ccttgggaga aggaaggcag
      361 gaaggataca gtcttgctcc caccttgccc ttg
//
LOCUS       KCLJ01000593             692 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 66974cal ultra-conserved element locus
            uce-2713, sequence.
ACCESSION   KCLJ01000593
VERSION     KCLJ01000593.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 692)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 692)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..692
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="66974cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>692
                     /note="ultra-conserved element locus uce-2713"
BASE COUNT          193 a          117 c          167 g          215 t
ORIGIN      
        1 tttctctgca gtgataattt tagattggtg tgtattgcct gttcaattcg gtattcagga
       61 cactgcaact tctgcattta tgaatactgt ctcataaatg ggatattaag ggaatttgta
      121 taatctctaa taataagatt aacatgatgc accgtaagtt ttgtcctgca gtttgttaac
      181 caggaaggga tagttgcaag ctagctatct tgctttcttc tgagctactg gaggctggct
      241 gagctttcag ttatttacct caatagaaaa ctgaaaggga aaaagtgaac aaaggaggtc
      301 tgttttgcct gtcccacttg ctgggctgtt gtctttgccc ttttcagtga aggagggggt
      361 agagctgggt cagagttgaa gaagactgaa aaggaattca agtcttatat tgaaatgtga
      421 atgatagctt agtttgagca ccgaacacat tttctgcggg agctttaact gacagatggt
      481 gatggactgg catataggct gctagaaggt acagctagat atgtgttcag accctgatta
      541 gacactcagt aaacaagtgc atatctgatg agacttttaa tactggagat actgatgcta
      601 gacactgtgt gacacactag acatttgatt gtgtgaatta agggcagacc cctgcagctg
      661 gcatacattc aggcttactt gtctagccta at
//
LOCUS       KCLJ01000594             759 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 67087cal ultra-conserved element locus
            uce-7289, sequence.
ACCESSION   KCLJ01000594
VERSION     KCLJ01000594.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 759)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 759)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..759
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="67087cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>759
                     /note="ultra-conserved element locus uce-7289"
BASE COUNT          223 a          158 c          164 g          214 t
ORIGIN      
        1 agtctgccga cagacagcct tacgctcaca tttagtttaa atgcagtgca gtatagtttt
       61 tcattatcat taacgtgctc ctggtgggca gagtgcaatg cagtggcact ggtcacactt
      121 cattgcttta tctcatatga caaagagaga tgatgtgctt cagcccaggc cagaagatga
      181 aagggaaagg tggccatggc aaactccccc tgctgccgag gagccgcggc cgggctgcgt
      241 cgtgtgactc gctaacagca cgaaggggca gacaaataga ttttcctcta tatttataac
      301 cagcatcatt cttcctttca ggcctttcag tgcaggtagc tgttttatat gaaatgaaca
      361 atctttatag acgtaccaga gccataacaa ggctgatttt cagcgaggct gaggtatata
      421 actcttacag aattgtcagg cttcttgctc aacaaatcaa gcctaactta tgatgtttgc
      481 agtgtaattt ttattcctgt ttgactagcc aactacccag tggtaatagg atgttagaaa
      541 agggcagtag caatgtttgt acatgccatg attgataggc aaactctgca tttttcattt
      601 atatctcctg attccaaatc agttaagttt aggaaaaatg aaacaaaatg gcaagaaaaa
      661 tgcttgcaga ttgcagccca gcactctcgt agatctgagt tcagcccaca tctgctagga
      721 ttgtctggaa acattaagat atctaaatga aaatcaata
//
LOCUS       KCLJ01000595             714 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 67197cal ultra-conserved element locus
            uce-5013, sequence.
ACCESSION   KCLJ01000595
VERSION     KCLJ01000595.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 714)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 714)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..714
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="67197cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>714
                     /note="ultra-conserved element locus uce-5013"
BASE COUNT          183 a          152 c          198 g          181 t
ORIGIN      
        1 cttcaaaggt gtctggactg gtgcctaagc aaactgtcct gtgaagttgc tgcctctgta
       61 ggtctaatgc ttgcaccctt ctgtttctta acagatggga caaagattag taaatgccag
      121 gttagcggtt cccttctgct gcctcagatt tgagttttgt cacttgggga gcagagcagg
      181 gctggggcgg ctggggagct gggtgttggg cgggatgtca gtttatcgat cgcacctcag
      241 tcaggagagc tgcgggcgca gtgctctgag cacgagcggc agcgtgctta atgtgattga
      301 aaggcagtta aaatggcggt gaccttttca gggggaatta gattgcctgc caagagtggt
      361 tagagggagt gataacgcca gcttgaggaa gctgtccagt ctgcttcaaa ggcagggaaa
      421 gcaagctggc agcaagtacc atttaaagca cgaaccgtgc ggtctgatag aacagagatt
      481 gctgtcctct ttagatatga aagaattgaa gaattgtagc taagttctct ccacccgccc
      541 cgtcctcctc ttctcccctc caactaaaaa gcctcctcta gctcttctca gtttcttttg
      601 cttaaaaata acacaaaaga gagaaagagg caagcagggc attttcaggg aaggatatga
      661 gaaagatcac catcacaagg atctgtctga tagattgtga tactcttgaa gaag
//
LOCUS       KCLJ01000596             705 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 67309cal ultra-conserved element locus
            uce-2585, sequence.
ACCESSION   KCLJ01000596
VERSION     KCLJ01000596.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 705)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 705)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..705
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="67309cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>705
                     /note="ultra-conserved element locus uce-2585"
BASE COUNT          249 a          148 c          102 g          206 t
ORIGIN      
        1 aaaaattaat ctatactgta atgtccttta aaaaccagca ccaagtaaca aaacatacag
       61 tattattacc cagtacacat tcattgtatg ccagagttca aaaacagtta agaaaatgga
      121 aaagttgccc ctctacacaa atttgttaat ggggaacata atggtaagcc atgtttgctg
      181 gcattctgtg aaacatctac aaattgcctc tgcaaagcat tataggttgt cagactaatg
      241 cagttgaaga taatttggcc tttcagtgaa ttgaacctca cagcacgatt atactccagc
      301 accaagtaga gtgtcacaat tattctttca tgctgaatta ccatataatg tcataagcct
      361 acctgtcata agtcctgcag ccaagcttga attttttcta aatctatggt tcatggcttc
      421 taatggaaat ctgattgttt ttatcaacaa taaatttcat agcaaatcaa aggatatgct
      481 tggacaaaca atctgatact caaggttaaa aaacacacaa ataataaatt gctggtgtgt
      541 catgttcaat ttttactact gcattacact gcaataacca taacaggatc taaattgttg
      601 tcagaacatt aaacaaaccc ccttacttca caaaggcatc ctgcctgagt aattcacaca
      661 acggaaacaa ctatcacatt ttccactgtc ccaccaccgt aacat
//
LOCUS       KCLJ01000597             709 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 67417cal ultra-conserved element locus
            uce-4626, sequence.
ACCESSION   KCLJ01000597
VERSION     KCLJ01000597.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 709)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 709)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..709
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="67417cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>709
                     /note="ultra-conserved element locus uce-4626"
BASE COUNT          148 a          200 c          180 g          181 t
ORIGIN      
        1 cacttgcaag cggactccat ctctgctgcc ctgttacgtg caggttaaga gggtagacct
       61 gggccggtga ctgggtaccc gatcccagct cctctccctg tctttgtggc cagggaagga
      121 tggagtgata gtgcaccgtt ccctccacaa atctgccatt cagcggggcg aggtcgggaa
      181 ataatgaagt cagcacatta gcgccttgcc tgctgagctc acactgctga aagctgccgg
      241 tgggtgaatt tcccagcgtt tggaaacttt gtctcagttc tgcgggtttg ctcaagtgtg
      301 cgatggctgt ttgcaaaggg agctttcccg ctgggtgggt ttgctttcct cctcagggct
      361 cagggaaggt gagagctctc cttcatgtct cccctgcccc cactgctgcc cctcgctcac
      421 cccacaaaca caaagctctt ccagcgggtt ccctccgctg gggagctttt ccctctccca
      481 actcccacac tgggacattt ttccacattt ccaggattac ggccactttc acttagatct
      541 atgtgtgttg cctccacata caaagaagca ctcggggacg ggattagtag gattagaaga
      601 gattcacata tgtccagttc aagcaattgg tattcaaagc tttacacttc caaatgccac
      661 caagagagag aaaaggagct gggagcttgc tttgcatttc agcaccttc
//
LOCUS       KCLJ01000598             586 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 67529cal ultra-conserved element locus
            uce-2450, sequence.
ACCESSION   KCLJ01000598
VERSION     KCLJ01000598.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 586)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 586)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..586
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="67529cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>586
                     /note="ultra-conserved element locus uce-2450"
BASE COUNT          205 a          110 c          105 g          166 t
ORIGIN      
        1 aagaccatca acaagtttct gaagatacag tctacaagga aagagttcaa cattttcaca
       61 caggtcaaaa tgtaaaatat tgaaatctgc ttgtcacaaa cagaagggca gagttgatca
      121 gaaaaagaac gtatctgtta tctaaatgat aaagatactg caacaatgca aataaaataa
      181 tgaatatgta ataaatacct actgctgcag tttctatgta tttaattacc attgtatttg
      241 agcgagtgct gttgtctgca tcattctatc caacaaagga gggatgtccc attgaacaga
      301 ttggttaatg ctctggggca acagatgtct actggaactg caggagacca gcaactggtg
      361 gcctgcccat cttctgaaaa ctttcaatag actcatgcat atgttcacac aatagggcat
      421 gtggtagaaa tgcaaacctc tttttaaccc ttttatatgc tctctttccc tctcaactga
      481 tatatgaagg tcaggatact tggaacatag gctcatggtg tttgctcttc agcctaacat
      541 ctgaatccaa aatataaaac aaaacagatt agaaacttta taaaaa
//
LOCUS       KCLJ01000599             474 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 67635cal ultra-conserved element locus
            uce-4335, sequence.
ACCESSION   KCLJ01000599
VERSION     KCLJ01000599.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 474)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 474)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..474
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="67635cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>474
                     /note="ultra-conserved element locus uce-4335"
BASE COUNT          124 a          110 c          103 g          137 t
ORIGIN      
        1 cccccacttc tataccacga gcccaaacat ggaacatatt ttagcagaag tgccccagct
       61 ctatcatatg tgctgtgcag agtcatcatg gccatggtgc atagctgaga gccggaaagc
      121 aaacagctgc tgtagcctga tttgagttaa aatagtgtca gtgtttagtc tggcgcagtg
      181 cttcaggaga gattggcagc tgggtcaaac aaagtcattc cattggctcc cttcccagta
      241 agcttctgct agtatttagg tactagtgca gcctaggccc cttttctcag ggatagccta
      301 acatctgacc gcacctttta aaaaatgcct tttcactctt taagataaat cctctattat
      361 acaatctgtc actaattgtg tgttaagact gtttttctct cgaaagctga tgcatcctgc
      421 tctcaacgtg gtctagaaag tgggctgtta cagtactgga ttaataaaag gggc
//
LOCUS       KCLJ01000600             487 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 67743cal ultra-conserved element locus
            uce-1201, sequence.
ACCESSION   KCLJ01000600
VERSION     KCLJ01000600.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 487)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 487)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..487
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="67743cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>487
                     /note="ultra-conserved element locus uce-1201"
BASE COUNT          161 a           75 c           83 g          168 t
ORIGIN      
        1 aatttagcag gatatgattc agtttaaaag aataaagttt gaaccagaaa tacgtgaact
       61 gattgcgaat atttattaac taaataattt aataataaag aaaatgccta cttgattaat
      121 tgttacagag taaaaattac aataaaactg tcttgatcag tgctttgcag aagcaccatt
      181 actgtctgtg cagttgttta acaaggattt aattggaaag ataagtgaat gcacatttaa
      241 aagtattgtt aatttgcttt ataatcaccc catccttcac agtattgaca gcaccaggca
      301 caaacccctt tctcttttac aagtattatt ttccatatgt gcacaataaa ttctgaagca
      361 gtaattggaa attttatgga tttcaacata cctagtgttt tgagtttata ggtgccatat
      421 cccttctcta aaggttgttc ataggtggca attacccaca gccttgttgt ggtgtggtag
      481 tttgttg
//
LOCUS       KCLJ01000601             415 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 67852cal ultra-conserved element locus
            uce-1986, sequence.
ACCESSION   KCLJ01000601
VERSION     KCLJ01000601.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 415)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 415)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..415
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="67852cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>415
                     /note="ultra-conserved element locus uce-1986"
BASE COUNT          129 a           71 c           76 g          139 t
ORIGIN      
        1 gagtctttca ctttttaatt cagcgattct ataaacatct tctgccaatt taaaaaatat
       61 ggtaatacaa agcaattttg tttgctctaa ttctggtgcc agattaggta attagaatgg
      121 tgtctaatat ccttccagta aatgtttctc cataaatgca aaatggaatc gagggtctgc
      181 gggttacatt agcttaatga aaacaagact ttaatgcata ttgttacagc agcgtttgaa
      241 tgcacttatt aaggcccgtg ttcccacaac catatggttt ttgtcattaa tgtctccttt
      301 gaggaaaagc actaaaatta ggttgcatct ttgattccaa tgatcccaac taaatgatat
      361 ggtaaccata tggtgtgcag tactgataga agaatctgga aatgtccttg taagc
//
LOCUS       KCLJ01000602             371 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 67958cal ultra-conserved element locus
            uce-6335, sequence.
ACCESSION   KCLJ01000602
VERSION     KCLJ01000602.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 371)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 371)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..371
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="67958cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>371
                     /note="ultra-conserved element locus uce-6335"
BASE COUNT          132 a           56 c           67 g          116 t
ORIGIN      
        1 gaaagaacat tttgttaaat gaataaacta agagaaataa tttcagaaga agtgcaaacc
       61 agaaaacaaa taaaccttaa tactaccaca aataaatgag actaaggcaa ttgtgggact
      121 gctcaaagcc tttttgcctt gctgaatgaa agcaatccct aagactgaat gggtaatgag
      181 atcctggctc ctgagatttt agctttctta atcatgttca taattaattc aagaacattg
      241 ataatttcat tacattcttt ttgtcttatc aataaatgat gtgcctgcac ttttggtcct
      301 gtgtacaggg agaaaggaga tgctttgggt aatactgcac caggaattgt atatgtatat
      361 atgtatatat a
//
LOCUS       KCLJ01000603             584 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 68058cal ultra-conserved element locus
            uce-232, sequence.
ACCESSION   KCLJ01000603
VERSION     KCLJ01000603.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 584)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 584)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..584
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="68058cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>584
                     /note="ultra-conserved element locus uce-232"
BASE COUNT          202 a           80 c          104 g          198 t
ORIGIN      
        1 tttattaaaa atgaaacatt aaaacttcaa agacctattc tggatatata aagtttcaaa
       61 ttaaaatgca ctatgtgttt cgcagcaaaa aaggctatga agatgaaatg gatgctttat
      121 ataaaatatt tacatagata gaacataaaa aatgtaccat agttggtaac ctttatgact
      181 tggggaacca tgtatttaca tatctttatc ctcgcatgtg cgtatgtgtg tgttgtgtat
      241 atatttttaa cagttgacag ctgttttaga gcatacagag atgccaagct gaatgagggt
      301 cttgattact tcaagattag ctatctaaag tttctattca ttttaagtgt tgttagtgcg
      361 aagagtcatt agtcacttcc ttgtctcata gaacatcagc atacatttac attgttaatg
      421 aacatttggg gtaaatgaat taatggcact tttaaacatc aattcaatcc taataacttc
      481 gtatgtcata gaaatgttaa ggttgggata aaaatgagaa accttttcag tcaaggtaac
      541 taattgcttc tgggcacaat aaagggtaaa attaacttac ggtg
//
LOCUS       KCLJ01000604             596 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 68168cal ultra-conserved element locus
            uce-4159, sequence.
ACCESSION   KCLJ01000604
VERSION     KCLJ01000604.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 596)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 596)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..596
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="68168cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>596
                     /note="ultra-conserved element locus uce-4159"
BASE COUNT          209 a          117 c          110 g          160 t
ORIGIN      
        1 gaagatcaaa cgaaagaggg gactcgggtt aaatgctgga agacaagctt aaataaagtt
       61 ctaagaaaaa agcaagacac gctgtaattc caagaaccta ttacttcaga caatttactt
      121 caaaaaataa aatcagaatg gtaaatgatt acccaaaagc aatcatgtca tcatcactga
      181 aagatggaat aaaataattt tttgtgaagt ggctgaatga gagcaactta aaagccacgg
      241 agcctgtcag aagcacatta tttcttttta caccccgttt cccaattcat ctcagtgctg
      301 ctgactaacc ttggctccca gcaggtggag catttaaaat aaatagcatt tcctacaaaa
      361 cgcgctccaa ctgccccatg acagacgctt ccaattcctg gccagccact ggatcagctt
      421 cagcggtatc taacaaggtg taaatacaat aacaagcatg taattaagtg agcatgatga
      481 agttaatgga gataattcat tccattttgg gcttatgaat attctattag atgttatcag
      541 gcagctggaa tagctgttaa tttaatcatc attcagacca gcaaaatgtt ctttgt
//
LOCUS       KCLJ01000605             501 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 68275cal ultra-conserved element locus
            uce-2472, sequence.
ACCESSION   KCLJ01000605
VERSION     KCLJ01000605.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 501)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 501)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..501
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="68275cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>501
                     /note="ultra-conserved element locus uce-2472"
BASE COUNT          145 a           83 c          107 g          166 t
ORIGIN      
        1 tttctgggaa cttactgcac taaatattgt gtgtcccatt tgcagctctc ataacaactg
       61 tgggtctttc tctctcgtct gttcactggg ttttcttctg catataaatg cattctctgg
      121 tcattttgaa ggatgtatct gctacactgt ttcattaaac tgccgcgtta tcaggtaatt
      181 gtttaaacat aatgccatag caatatcaaa aggaaaggtg aactaatggc atttgcaaat
      241 gtcagggatt atcttaacac ttttattata gtttataaaa agtaggttca gggcattcca
      301 tggcaattat ttccacagaa attggttatt taaataaatt gctaattatc tggatatgac
      361 agtattgaaa accctgctaa tgagttattt gataagtgta gcttatggtg gccacctaca
      421 ggtggcagaa agaaagagcg agcagagtga ttgcagtcgg aaggaatgcg aggcaaatgg
      481 tttgtgtgta atccctggac t
//
LOCUS       KCLJ01000606             717 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 68383cal ultra-conserved element locus
            uce-2527, sequence.
ACCESSION   KCLJ01000606
VERSION     KCLJ01000606.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 717)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 717)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..717
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="68383cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>717
                     /note="ultra-conserved element locus uce-2527"
BASE COUNT          192 a          192 c          140 g          193 t
ORIGIN      
        1 caacctcttc caaatgctgc tgtaaacagc aggctcttgg agggggctgg aaggtggcaa
       61 tggtaaggtt catgagccac ctcctggcta tctcctctcc aagcacagcc acactgccat
      121 gtggaggaaa cctttggcag ctgttttgtg ctgggagact gggcttgttg agcttggctg
      181 agtaatccca gccactcctg tcactgcagc tgcatgcatc cttgttctcc caacccaagg
      241 atcgctgcct cgctgaatca ccccattaaa ttgctaatat cttattgttc tttaagattt
      301 tgaaacttgc tgcgcaacgt ttacagataa tttttttttg cctgcagtca ctgtgcctaa
      361 tgcccagtca ttgagtgcca tatgtgttta tatgcactgc aattttccac ttgattacat
      421 tttaccacaa acactttcat ccactccgca aagacagcag caacacatcc ataatgttca
      481 gagcagccca gacagacaga gctcagacac aaatgtctcc ggacactgca aaatgtgaga
      541 ttcttaaaaa caactgaccc agtctccaat tctgaagtct ccaagggcac aaacacctca
      601 gtcacctaac agaatgtgca aagttaatgt catgctccag ctttcccatt aatgctgctt
      661 gtaagtctgg aacagctaca caacatggac atgacccaag gatatctcag attttcc
//
LOCUS       KCLJ01000607             305 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 68494cal ultra-conserved element locus
            uce-6922, sequence.
ACCESSION   KCLJ01000607
VERSION     KCLJ01000607.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 305)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 305)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..305
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="68494cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>305
                     /note="ultra-conserved element locus uce-6922"
BASE COUNT           83 a           67 c           66 g           89 t
ORIGIN      
        1 ataagatgtt gttgctgctc tgattgtaag gtagcgatgc cttagttcat aaagggctta
       61 atcattgtgt ggcaggttct gatgcttcac ccagagctgt gctgtgcaac tgctctctct
      121 ctttgcaggt ttgtgtacta gacctccgga aatagcgctc ttagttggaa gccatggacc
      181 gactatgaat gtgtacatag ccaaaatgac tgtccctgac ccatgtactg ctatagtccc
      241 aatcgaacca tggccagtcc actacagcca aatgtaaaag aaatatatac atatactgta
      301 tataa
//
LOCUS       KCLJ01000608             529 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 68595cal ultra-conserved element locus
            uce-5734, sequence.
ACCESSION   KCLJ01000608
VERSION     KCLJ01000608.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 529)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 529)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..529
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="68595cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>529
                     /note="ultra-conserved element locus uce-5734"
BASE COUNT          166 a          118 c           89 g          156 t
ORIGIN      
        1 taacatttct gcagtttcca tgagtattta gctcatttct ccctactggc attgtggcca
       61 cagctgtcac tgtcccccca gccagtgtgc acaaaaatca gaattcaagt cctgtctgaa
      121 aagtaaaagg gacaaattag tttcttgtca ctgcactgca ataaatacat tgtcattttt
      181 ataccccagt gaatcatatt ctccatttcc cccgtaacta ttatacagtc tgctggcagt
      241 acatcatttt ttggtaattt tattttcacc aattgtttta tgaaattttt gagttttatg
      301 gacactaaaa caaatctagc ctgcgcgtat tatagccctt taaatcacca gcaggaaatc
      361 tcaaggttcc tccagactgt gagagaagga agctttagga aagaaagatt gctcctagct
      421 tataaactga gcaaaaaccc agagataagt ttgtaaaagg gacatacatc atcactggca
      481 aaaagcagga cgtaaaacaa catcgctccg ctcagctccc ttaagaata
//
LOCUS       KCLJ01000609             654 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 68703cal ultra-conserved element locus
            uce-4248, sequence.
ACCESSION   KCLJ01000609
VERSION     KCLJ01000609.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 654)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 654)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..654
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="68703cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>654
                     /note="ultra-conserved element locus uce-4248"
BASE COUNT          214 a          112 c          115 g          213 t
ORIGIN      
        1 attttggtag aagagtacac aaatacctac ctacagtaag ctgagcagaa gttactcaaa
       61 catatgtaag cctgtaaaat tgagccacag tgtaaatatg ttattcctgg gacaagaatc
      121 tggcagagta tggaaaagct ttagcagttg tattagtaaa cctgacagac ttgagaaagg
      181 agtattgtat ccttagaacc atggctgcca gaatttaatg tcaacaatta aaatttattt
      241 tgatccttac ctagtgttta ttactgtttg tatacacaac agaccttact aatacagaga
      301 tgcactatta gatggaatta ccatctgttc agagcgaaat gctggcatct gtcttcgagc
      361 ctaaaactaa aatgatatta tttcaaacaa aacaaaatta actgctcttt acttaccaac
      421 ttcatttttg tgtacacgtg tgtgcataaa cacatgggaa aggcttgttt gtagtgacct
      481 gtgcagcaac atctatattt agatatatga cttcaatgta agctgtatgg accatctgtc
      541 tttattggtc ttttctgtgc cctttgctac acaatggcat gcagcaatca tgggctttta
      601 aatactgttt tagccttata atatattaaa tatgtattat atagcaagac atta
//
LOCUS       KCLJ01000610             460 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 68815cal ultra-conserved element locus
            uce-4592, sequence.
ACCESSION   KCLJ01000610
VERSION     KCLJ01000610.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 460)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 460)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..460
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="68815cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>460
                     /note="ultra-conserved element locus uce-4592"
BASE COUNT          145 a           82 c          103 g          130 t
ORIGIN      
        1 caactgaatg ttgggctttg caaatgcgtg caacaaaaaa tcttttcttc cctctagcca
       61 ttgttctatt gtctttcaaa ggccattaaa ttgaacagca ggttgtgatg aaaatttcat
      121 taagccctag ttaaatcatt atgagggtgc catattcatg tctctgctta ctccccaaaa
      181 aatgaatagg aaagagttga gctttctcct taaaagcgaa ctaacaaaag ttcagaagtt
      241 agaagagaat gggaaatggg acatgaaaca aaaggaggcc agagaggtga ggtggctagg
      301 aagaaaatta gacttgcata agagcattga aaggtggtga gggacaaata catcattttg
      361 acaagcctcc cccttccctt cagccaacat ggttgttttt agagtggcta attatatata
      421 tttctgggtg cagatggcta gactgttctt cgaggtcctc
//
LOCUS       KCLJ01000611             542 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 69027cal ultra-conserved element locus
            uce-4999, sequence.
ACCESSION   KCLJ01000611
VERSION     KCLJ01000611.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 542)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 542)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..542
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="69027cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>542
                     /note="ultra-conserved element locus uce-4999"
BASE COUNT          163 a          104 c          144 g          131 t
ORIGIN      
        1 aaacgtgctt caaatacaat aacatgcttc tgtagggtct cccagaaagt tcagctaagg
       61 acatgctacc aaattacaga ccccatgaaa gccaggaggg ttttgttcag ggtcggtgga
      121 atccgaatgc agcgccgtgt ttggccatgt gatggcggaa gaatgtttta cgagctcctc
      181 tttttcattc taatgtaaag atgtgtgtct agttctgcat tccaggaagc agacatagta
      241 agctctaagg acagtggtca tggagacagt gagcaaggag acagtgatca tgatgccact
      301 aatcgaggtc aatcctctgg taagtctgat aagagaatgg aaatattgga tctttaagta
      361 gggagactag aaggaacagc tacaaggtga gcatgggagg ctggggcatc agcttgctgc
      421 tacagcctgg acaaggaggc agttgtcacg ggacaatact ccatcattca ctgtagccct
      481 gcacattaaa acaaagttgt tggtacagtg gcagattgag agaatctcaa agcattaagc
      541 aa
//
LOCUS       KCLJ01000612             677 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 69136cal ultra-conserved element locus
            uce-5570, sequence.
ACCESSION   KCLJ01000612
VERSION     KCLJ01000612.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 677)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 677)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..677
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="69136cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>677
                     /note="ultra-conserved element locus uce-5570"
BASE COUNT          187 a          175 c          159 g          156 t
ORIGIN      
        1 gcctgtccag ctcgtggcca acatctcccg caggtgcacc aggaagggat tgctcgagag
       61 tacagcccag agcctgtcct ctccagcttt cctactgcaa aacctcgcag ccaaacgcca
      121 ggcaactctg caccctctcc aaagtgtgca gtcaaggggc tgctgcacat ctgtgctgta
      181 acacacggga agcgagggga aatgcagaca ccaaatcctc catctgcagc ccaaagtaac
      241 aatgttggag ggcaggaaag ggagagggaa tgtgctgcac acaatacaag aagtaggttt
      301 tgtgccaggc tcatcagtgt ggcagggtaa taaggtcaat gtgaaaacaa ctggaaggca
      361 cattccccag taaacatgtg ctgagtgaaa acggcccgac cttatgttgt agaatccaaa
      421 cccattgagt caattgccag aaaacatgac atgacctttc agattcagtg agcatcagtt
      481 ccaagagcag gctgccgtgc tcttttccat ttcactgctg cccccggagg gcctcaagtc
      541 acctgaaata atagcttggg ctcaaaatct gcactccttt aatgaaatac acatggcatc
      601 aagtctgacc ctggtggcag attttttata tgcctagctc aatttcttta aactaaacaa
      661 ttgtgctttg ttttgct
//
LOCUS       KCLJ01000613             825 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 69247cal ultra-conserved element locus
            uce-3215, sequence.
ACCESSION   KCLJ01000613
VERSION     KCLJ01000613.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 825)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 825)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..825
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="69247cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>825
                     /note="ultra-conserved element locus uce-3215"
BASE COUNT          240 a          112 c          174 g          299 t
ORIGIN      
        1 tgtcatagat tatttaattt ttaatcattt attgtaagtg gaaaaggtta tttaataata
       61 ttatcgtgac ggcaaaaaga acaacagttt tccagtatgt cctgtggtgt atgacggggt
      121 caatggaagc atctagagag cttcaagtac acaatctaaa ttaagattct aaacaggcat
      181 tacagatgct ggtaactttg gcaattatca ttttgtttgg tgaacagtag taaaacagtg
      241 tgcggtaaaa gtgtttagag agagaggata aataaattga acagttttgc aatgcaaagt
      301 ggtttgtggt gtttttgagg atttcttggc tcttgcttaa ctgctattgt gaagcctgga
      361 gcagattttc ccattgctaa tgccctagaa gtattaattc actttgatat gctaattaga
      421 gggcattatg caagaaatga gattaagtgg cagcatgaag ccatttgcct gtcagtaaat
      481 tgagagcttt agcatcagga ggagctttgt tttttctgag tttctcttgg ttttgcatat
      541 aaataaaatt gattgaaagg tctagagaag cttctagaac attggtggtt ctttttctcc
      601 ttctatgatt atttaaactt catgttaaag cctttctctg aatattaatt gatctaatgg
      661 gagataccga acatgaagaa tttcattgta ttctcagtta ctgtatctta acaaaaggaa
      721 agtattagaa ttctttgtgt catctgattt ttgtgggatt attttagata tatcttacag
      781 ctttgtattc taatgtctct gcctgctcct ggctgctgtg ctgag
//
LOCUS       KCLJ01000614             591 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 69359cal ultra-conserved element locus
            uce-6352, sequence.
ACCESSION   KCLJ01000614
VERSION     KCLJ01000614.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 591)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 591)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..591
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="69359cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>591
                     /note="ultra-conserved element locus uce-6352"
BASE COUNT          199 a           98 c           99 g          195 t
ORIGIN      
        1 tttaccttag gagaagcaaa gttgcttatt tctgtactgt agagttcaac agaactatgg
       61 actgatggtt tcaaaaggca tcagtcacac ttccacaaca ttttctgata taaatataaa
      121 agcttcattt taaaggataa ataaagcaac actattatct aaacagggta aaatttaaca
      181 tccttgtggt ttgtggaaat ttttgatgtg cctgctggct tttcaataaa aatcaattat
      241 gccttaaatg cgagcggtag tcaacatact acagactata aattcaattt catactcaga
      301 aatatggatt agctgaactt gatgcccttc cattgatttc agaaagcaaa agctgataag
      361 gtaaataata gtaagaagct ctctgacact ccacatcaag ttccggattt ccatattatt
      421 tttgtaagaa ctttccagcc accacaatat cctccttgtg aaatatgtat gatgaataga
      481 tattatatgg attgctgatt catctctatt tacagaatgg atatttggct tttataatgc
      541 aaggtgggaa ctggatagga aatgaatata cttatttctt ttagcaccat g
//
LOCUS       KCLJ01000615             632 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 69465cal ultra-conserved element locus
            uce-7104, sequence.
ACCESSION   KCLJ01000615
VERSION     KCLJ01000615.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 632)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 632)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..632
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="69465cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>632
                     /note="ultra-conserved element locus uce-7104"
BASE COUNT          200 a          113 c          106 g          213 t
ORIGIN      
        1 tatacagctg catgttcacg gctttattcc cttatcaaaa cctgtgaact gattttgatg
       61 atgcagaaat caataaaata tttacttaga gattttgcac ctgcatttgc aaacttcaaa
      121 accaaaacac atgaaccatg attatatttt ctgaagttag ttttttctcc acgacactat
      181 tggtatatgc aaataagtac tttttttctt tttgatacaa tttcattatt tgcattgcta
      241 ctagtggttc accaataaag gcgaacatca cattaggatt catgacagtt ttcacattgt
      301 attatcaata tgtggaaata attgtctgct ccgggattaa attacattat tgtgtatctt
      361 tttcatgcct aataaataat gatggatggc ttttattttc atcaccacct gcaaccattt
      421 agtcacccct tgattgttga agataaaata ataaaaagca agtgttatgt tgcaagcaaa
      481 agaatgcagt caaaacagtt gcatgcctcg tgtctctgtc tacctttttc cagtccctaa
      541 agagtaatag ttggtgttct gggaaggctg gcaacctgta aactggcaaa cagttctcat
      601 aaattgggca aggaggaaaa atgtggaaaa cc
//
LOCUS       KCLJ01000616             412 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 69576cal ultra-conserved element locus
            uce-3417, sequence.
ACCESSION   KCLJ01000616
VERSION     KCLJ01000616.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 412)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 412)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..412
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="69576cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>412
                     /note="ultra-conserved element locus uce-3417"
BASE COUNT          121 a           61 c           76 g          154 t
ORIGIN      
        1 tttttttact taactgcttt tgttataaaa cttcttatca aaaatattgc actatattag
       61 tacaagaatt ttgtaatgga atcacgggag tcattgctgc ccagatactg tattttagtg
      121 gaccttgtag ttggagagga aggtacaact tgactgagtt tattatggct tagtgatttg
      181 ctgattgatt tcatttgctg tcagttaagg ctctcttaat gtcaagcttt ctttgcataa
      241 tgccttgttt ttcagattga tgctgcttat ataaactgac cctgatttgc ccttctggac
      301 aatataagtg acagcagtta gacaaaaata tagtagtgaa tatgcaactt aaggattaaa
      361 tctttcagaa tataaaacta ggcattctct tatttcattg gagaagtaga ct
//
LOCUS       KCLJ01000617             563 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 69683cal ultra-conserved element locus
            uce-778, sequence.
ACCESSION   KCLJ01000617
VERSION     KCLJ01000617.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 563)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 563)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..563
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="69683cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>563
                     /note="ultra-conserved element locus uce-778"
BASE COUNT          178 a          117 c          102 g          166 t
ORIGIN      
        1 caactaggac ttgttattgc tactggtttc cattgcaaaa ggccatcccg catactttta
       61 atttctggcc atcttttgat gagccaccca gtactgactc agcggtgctg gaccttcact
      121 gggggcccag aactctgcag ctgctcgagc tctgcatttg cctagagcaa tgtgccagct
      181 gtctctgact gcattacacc acagtaatgc gaacaactgg aagcaataat gtgtctcccc
      241 atttgcctaa cagtaccaac atgaacaata attcaggaga ctgaagattt gtgctgtaat
      301 ttaataaacc ccatgcacat ttctacaatt gagtatcaca tctgtgcaat ggatcctaga
      361 agtgtaatat tcttttataa gggaccatta accaatctta agtttatagg tttccttaaa
      421 tctttttcat cagctgttaa actacagtaa agagaaaatt gcctcttatg agacaaggga
      481 tagtaaaata caaagactgt gattaaacgt caatcaatta aggattataa tataataaaa
      541 atgctgactg atgattaaaa tga
//
LOCUS       KCLJ01000618             636 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 69794cal ultra-conserved element locus
            uce-5068, sequence.
ACCESSION   KCLJ01000618
VERSION     KCLJ01000618.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 636)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 636)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..636
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="69794cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>636
                     /note="ultra-conserved element locus uce-5068"
BASE COUNT          168 a          129 c          139 g          200 t
ORIGIN      
        1 ttctctttgg taattgcaga gggcgatatg agtttataga gcctaacctg tttcagcaat
       61 cttatagagc cctctcagtt taagcacaat tgtttttctt tcagtacagc taagaggtaa
      121 gtgccaggat ttagcatgta taacattgtc tgaggcattt gttcagctgt ctgttgaatc
      181 ccctgaaact aatgctcagt ctctattaaa gtctcagtcc ctggaaagca gagcccattc
      241 tctcctataa ttaatcttgc aggtactgcc ttgacattat tggttcacca gcagagcaga
      301 actgccccag ccatcaataa taattcagcg cattaggaca agacctgtgt acacagccca
      361 cagatgtagc cgagctgtgt gcaggctcca gcacgccttg ctgacaggga aaagaaggtc
      421 aaaagtgttt tggttgctgg ataattttgc aatacaaagg tcatggtgtt actcatgctt
      481 tggctttatg tcttcaaatg ttggtacagt ttggcacaat gcttgtgatt gtctgtttac
      541 tgaatcttta tactaaagct gttacaaatt ggctttcaca gatggtggga gcttctcaga
      601 tcaggagagg cagggaattt attactcaat atttct
//
LOCUS       KCLJ01000619             620 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 69900cal ultra-conserved element locus
            uce-7965, sequence.
ACCESSION   KCLJ01000619
VERSION     KCLJ01000619.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 620)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 620)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..620
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="69900cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>620
                     /note="ultra-conserved element locus uce-7965"
BASE COUNT          175 a          164 c          109 g          172 t
ORIGIN      
        1 tggtttgaca tttgcattac aattaacatg gcttgtcttt tactagggat gtaccacacg
       61 agtggacctt ggctttccca tcagttcttt gatggcttta aaccttggtt tattttaata
      121 ttggtacaga cattaaaatg cacataactg agccactcgt ttatgcatat aacatccaga
      181 gactttggac tccagctgcc tgcaccccta accatgtgct acatttttca ccaagtttct
      241 ctgccctgct gtgccctggg gcctctgaca gccctttcct tttcccagat ccgcgtcgtg
      301 aaggcattcc gtagctctct ctatgaaggt ttagaaaaac cagaatctag aacctctatt
      361 cacaacttta tgactcatcc tgaatttagg atagaagatt cccagcccca catcccactc
      421 attgatgaca cagacctaga agaagaccct gctctcaaga aaaactcgag tccaccgtcc
      481 tcgctgaaca agaacaacag tgctatcgac agtggaatca atcttacaac tgatacaagt
      541 aaatcagcta cctcttctag tccaggaagc ccaatacata gcctggagac atcactttag
      601 ctgaaaaggt cactgcaaaa
//
LOCUS       KCLJ01000620             872 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 70008cal ultra-conserved element locus
            uce-1311, sequence.
ACCESSION   KCLJ01000620
VERSION     KCLJ01000620.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 872)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 872)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..872
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="70008cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>872
                     /note="ultra-conserved element locus uce-1311"
BASE COUNT          269 a          185 c          158 g          260 t
ORIGIN      
        1 aaacaaacct tacagtcata tcacttcctg cagctggaaa gaaatcaata caaacttttg
       61 tcatactgtc taaatgtaat tgatgtacag taaacaaaac tgaatttaac caaagatgag
      121 aaacaacaaa ttcacccaca aactctggaa atttgtttgg agctcatatt caacctttta
      181 tgttctgctg cttagcatcc ctctcctcct accccaacca attaagaaga acactgtatt
      241 tctcccctcc tttttcggtc aaagaatctt ggcacaacca gcacaaacaa actttgctaa
      301 cagctttaaa cttggaaggg ccgcttttta aatatttgcc gctacataat tgaaacagct
      361 gttttaatga gatacctact gtcatcattt taccctggct gagctgggtg acaacaaagc
      421 agtaataacg aattcaataa taattaactc gggtcatctg ctcatctgtc atggctcatc
      481 agctttaggg agaaaaatcc cagtgaactt ctctcttttg tgagctttcc aaaactctgc
      541 aataaaatgc ttagagagga ctctaggtag cccttcaaaa gttctaagca aactggtaag
      601 taggttaatt aaattttatg catgtttaaa tgctaatgat tacattccta acattacagt
      661 gtaatctgtt atggaatgat gtcatgcaag cagtggtttt tagtgcctaa cacatttcca
      721 tcctgatgtg gagtagctct ggatcatttg tcggagggca ggaagttgac agtggtgttt
      781 cagagccagg ctctccctct ctgttgaatg ttaagcaggg gagttacaga aagccactga
      841 ttttatgcct actgccacat cacagagggt ga
//
LOCUS       KCLJ01000621             705 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 70119cal ultra-conserved element locus
            uce-3334, sequence.
ACCESSION   KCLJ01000621
VERSION     KCLJ01000621.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 705)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 705)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..705
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="70119cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>705
                     /note="ultra-conserved element locus uce-3334"
BASE COUNT          182 a          166 c          137 g          220 t
ORIGIN      
        1 actgcattct tgaactgcaa tgtattcatt tgtgggcagt ggggcagcca gtgggagggt
       61 attgattgga gtataatgtc atgtgtagca gcgagagtaa gatgaaaagt gttttctgct
      121 taatgggttg gtattaagta ggtgggaata gcttctaatt agccaacaat tgctgtgttt
      181 ctcagtttcc ctcccttccc tcctcctgtc ggtcaccagc tgccaatctc tctctccttt
      241 tccttgtgtg gagttcattg ctcactgcag tgaaaggctt tgtttaaaaa agagggctcc
      301 cagggtctca tctgccaggg tacagcttgc tgcctgcgat gagtagcaac tgtcagttta
      361 ttttatctca accttttcat catcctgctg aaactggtcg agtgaaacca cctgagagac
      421 ctgaggattc agtacctaca agtcattagc caggactgct cagtctctcc ccacacagca
      481 agtcaactga acactgctta aaatatagtc cactttaacc ccatattttc ctacgacgta
      541 ttaggaccat cttccacatt gcacgatcat tccttttaga aatacaaaat ataacatact
      601 aaaatttaga acagcctcag tcagaacctc cttcttattt aggttatgtt ctccagcata
      661 aatatcatac ctagcaactc aattatttga acctctgctt gtctt
//
LOCUS       KCLJ01000622             820 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 70232cal ultra-conserved element locus
            uce-2782, sequence.
ACCESSION   KCLJ01000622
VERSION     KCLJ01000622.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 820)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 820)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..820
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="70232cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>820
                     /note="ultra-conserved element locus uce-2782"
BASE COUNT          244 a          138 c          166 g          272 t
ORIGIN      
        1 tcatggtcaa aggtggatgt tatcaaggca agacactgtt agccaggaat taatgtaata
       61 tacaagtgga gcttctttgt ttcctgagct atctgttgac attccctagg taccaaaaga
      121 aaattacagg gatagacttc tactgttatt atctcagtga taggtcatat ctccaaacaa
      181 actgtatgag gaaggttatg ttttggaata acatcctgtg tttttgtgct taaccacttt
      241 tcattgatgg tctgaagttg cattgtatta gcacgaagta ttttacagag ttaattgata
      301 ttccaggttt gtctggggga aaatctacag ctccccacaa catgcttgac aagttattat
      361 atttacttta gtcaaagccc gagtgtgcag tatccctctt ggaggtggtc tattattgga
      421 gtcccatatg ctttttgttt gggaagaaag cagtcactgt gtcatactgt tacacagggt
      481 attctttttc aaggatgttg ttcccttggg gaccatatca tgccagagtt cctaagtcta
      541 ataagacctt tgtagctctt attgagtcaa agttctggga gggaagcaag agttaaacag
      601 aaaatataat tcaagcaact atactagacc acatgttgaa aaatatcact gttcaagcag
      661 aaaggcaaag gcttcaaaaa gattcctgat gtgtttttat gtttcttccc aattaatcaa
      721 aacgggtgat ctttgtagaa tgtctggttt tattatagta attaaaaata tatcagcagt
      781 tccatgtcct tgtataccac aagtcttcaa aagaagtgtt
//
LOCUS       KCLJ01000623             374 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 70340cal ultra-conserved element locus
            uce-7071, sequence.
ACCESSION   KCLJ01000623
VERSION     KCLJ01000623.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 374)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 374)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..374
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="70340cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>374
                     /note="ultra-conserved element locus uce-7071"
BASE COUNT          119 a           97 c           62 g           96 t
ORIGIN      
        1 gccttgaaat ggttcagcct tccaactcct aggaaactaa tttcctacca atctatttgt
       61 tttgaattag catctacaaa gataactgtg agcagcctgg actttgattt ggggagtaca
      121 ccccagaaaa ctgtaaatgc aggcactgct ttcctttgca tccagaattc aacagagctg
      181 tcagataaca catgagagat ggttaataat aaattaaaaa catcgcagcc acagggaaac
      241 tgcatctctc ccctaaactc cccctctctt ttgctttttt ccaccccatg ggcttaatca
      301 gcatcaaaga gtaacaaatc caataaaatg cttccctgag ccaggaacca gcctgaactg
      361 gatacacaca caca
//
LOCUS       KCLJ01000624             623 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 70440cal ultra-conserved element locus
            uce-18, sequence.
ACCESSION   KCLJ01000624
VERSION     KCLJ01000624.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 623)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 623)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..623
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="70440cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>623
                     /note="ultra-conserved element locus uce-18"
BASE COUNT          147 a          125 c          128 g          223 t
ORIGIN      
        1 tttcctcttg ctcttacatg tgtgtgtcag tgccacgcta gagcagcacc aaagtggtta
       61 cttttaactg ttctacttcc tatggatctg tgggtctctg ctgggcttgg gcaaagttag
      121 ttggtggctc agcttcatgt aattgaaagt cattttgatt tctgcactgt ggtgtaattg
      181 ctcacatgtt atttgatgat taagattctg gagtgaattg tgttcttttg ggttcttgca
      241 ctgtttctcc atcagggact tggtttcagt ggtgtgcagc tgctggagtt gatttacagt
      301 gctgcggctg tggctagtca taaataaatc ctcttatata gttgttatga acacctgtta
      361 gatcatctgt cagcaaagcg ctgttcacat ttatcatggt gcggtagtta ttttacctca
      421 atccatttcc gactgactcg gcctccatca ctggattact attaccacac cataatcgct
      481 cgtttccact ccatgttaca acttgcagat aaaagatttc actacttggc caaatttcat
      541 aaataaagga gcagttcagt gcagtaaaag tttatttttg tcatcatttg tcaccccatt
      601 attctataaa tcaaatggaa tag
//
LOCUS       KCLJ01000625             499 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 70553cal ultra-conserved element locus
            uce-645, sequence.
ACCESSION   KCLJ01000625
VERSION     KCLJ01000625.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 499)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 499)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..499
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="70553cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>499
                     /note="ultra-conserved element locus uce-645"
BASE COUNT          167 a          102 c           84 g          146 t
ORIGIN      
        1 atggcatccc tgagcatcaa tcacaccagt ccagccatct caattaaccc ttagttaagc
       61 tgggaccttc tggagaaact gaaaagaatt tgaaggaata agagatgcta tctgccacaa
      121 ggattaccaa tctacatgtg gatcaaagac aattccacat tttgccctag tgattagctg
      181 taattaaata aagtaagtct gtttaaactt cattagcagc aagatatttg ctacagcaga
      241 gtgggcacaa atcatccatt cttaattaaa agataatcca caggatgacc ataatcttgt
      301 tctaaaagta cactctttcc ccttgaaaga tttcttcatc aaataaggat aaataacagt
      361 ttctctctgt ttaagctatg aaggaatgga tgctccttcc catttgcttg aatgagtgct
      421 gaatgtgcct gataacatca ctttggcatg ctattatcta aaatggtaga atacctcact
      481 tcagcaaagt ctgacataa
//
LOCUS       KCLJ01000626             711 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 70653cal ultra-conserved element locus
            uce-6500, sequence.
ACCESSION   KCLJ01000626
VERSION     KCLJ01000626.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 711)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 711)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..711
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="70653cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>711
                     /note="ultra-conserved element locus uce-6500"
BASE COUNT          199 a          151 c          141 g          220 t
ORIGIN      
        1 tgttaaatca atgatcataa attagggttc tgtttttaca gcaccttgtg ggaaatggtt
       61 aaattaatca gctgcagcaa tgagcacctc ccacaagatc atgtcaaaag ttctcccccc
      121 atacaccacc aaaaagggga aaaaggactg aattatttgt ttttacctag cacacaaaat
      181 ggaatccctc cgtctatccc tgctaattcg tgtttcaatt gtacccagct gtttaaattg
      241 cactgtgcag agattgcctt gatccccagg tgctggtact ccatctgtgc tgttctgaga
      301 gactatttac agccgaggtt aggccagtga ttgctgggat ggaaaactca tttctcagcc
      361 tggcttttat ttacactctt attaaagatc ctttcactca tgttggaatg gcagctagtg
      421 gctgcagtaa gcgcttggca ctgagccaag cagggaaatt accatgtcga tgaaagatag
      481 cctgcttcca ttttaacctt tcactgttcc cccctttcca tctatatttg catgaagaag
      541 gatgattatt gaaagagatg ggggacaaag ggatgagaga atccttgtca actaagcttt
      601 tcaagggata aaccaatggt ttgtgaccaa ttttgaaaaa attttactgc cttaatttcc
      661 tactcctttc tcttaattgc tgttagagtt tattttcaca tgaagcaaca g
//
LOCUS       KCLJ01000627             582 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 70765cal ultra-conserved element locus
            uce-7751, sequence.
ACCESSION   KCLJ01000627
VERSION     KCLJ01000627.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 582)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 582)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..582
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="70765cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>582
                     /note="ultra-conserved element locus uce-7751"
BASE COUNT          174 a          113 c          114 g          181 t
ORIGIN      
        1 tacttttgga ccaggaaaat actgaataat gatacacatt ttaaaaatgt agctttgtaa
       61 cttgcttttg tctgatactt tcactactgc agaaatggtg atggggttat ttacggaagt
      121 cttttggctt gttgaaaaaa aatatgccca cactcctctc cttaatggga ttctttcctc
      181 gttgcagtgc aaacggctgg agcaggagct tcatcatctg aaagagcaga accagacttc
      241 agcaaacaac acgagacata tgactgctga aaacaatcaa gaacgtgctc tgaaggtaaa
      301 tctccatttc ttcttgcagg caaattaagg ttgtaagccc ctggtgccag ctttctgggc
      361 tgcatatatc agttgtgtac atttcggcag aagtgagcta tggtgtttgc caacaactgc
      421 ttctttaaac acagatacag cacccttctg ttatggtttt attttatttt gcattggaaa
      481 gcaacaacat aacatatcct ccaaattatt gggctggtaa ttaacactaa attcttgaga
      541 tctgtccttg caatattgta taaggtgaag aaaactgcaa tt
//
LOCUS       KCLJ01000628             670 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 70877cal ultra-conserved element locus
            uce-976, sequence.
ACCESSION   KCLJ01000628
VERSION     KCLJ01000628.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 670)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 670)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..670
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="70877cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>670
                     /note="ultra-conserved element locus uce-976"
BASE COUNT          187 a          116 c          112 g          255 t
ORIGIN      
        1 tgtattgcag ttggcagttt tctaaagaaa aatttattac tttctagatt gcatttgttt
       61 aatcacagaa atcttgcgta tttcgaacaa gtatttgtgt taccatattt ttttaacaag
      121 agaacaattg actcttccag cttgagcata ttaaaagctt agtcaggtgt atgctatatc
      181 tggttccctt ccagttttaa tgtatacatt ctctttttaa tgttccaggg aaaagcaatg
      241 gtatttgctc cactccgagg gaatacttta aaccagtttt gcaatctagc tgaaaaagct
      301 ggtttctcta tccaaagaca tgaaaattat gatgaacaca tttcgaactt ccactccaag
      361 gttagttttc tgcttgtgtt agataacact ttaatccgca ttgcattttg aagagatcat
      421 ggtccttttg gcaggtaacc taaatgtttg attaaagtac tccttaggtg tgctgtttct
      481 gaacagctat ttttgtatct gattattttg tgtggtagag ccatccttta tctctgcacg
      541 tctagaagag ttttaagcat ctcctgttta cccttttcat tcatagaaat ctaatttatg
      601 agagtctttt cttgttgttg ttagctgcct ataaatataa gcatttacat tttaataaaa
      661 agcctgcaac
//
LOCUS       KCLJ01000629             639 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 70987cal ultra-conserved element locus
            uce-225, sequence.
ACCESSION   KCLJ01000629
VERSION     KCLJ01000629.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 639)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 639)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..639
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="70987cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>639
                     /note="ultra-conserved element locus uce-225"
BASE COUNT          252 a          120 c           97 g          170 t
ORIGIN      
        1 aacctgtgtt tgcagaagtg tggctcagga acaagcaata cactgaagag ctgctccaac
       61 tctccacctt ttctgaatac tggcatctcc caaaaaagag agcttgcaga tttaattaaa
      121 tttaactatt ttatttgtga aaaaactaca agcagaattc ataaatagac atttctattt
      181 aaagcaggaa aatgataaag tggcttctaa taacagtcgt gcacatgcca gtaacaggaa
      241 tatattaaca tcttttattt gctagacaaa gagcagtgtc caatataaat ttcccaaaaa
      301 catttaagac ctgtgaattt ctgaccagtt cacaaaacca ccattgacac tttagcatga
      361 agattaaaac aaacctaaca ggactgtcag ctctaaagac tttacagagc ggaaaaacag
      421 aagcgttata caagctgtct ttctgggcaa atgaaaaata gagctcgtat aatacattaa
      481 cataaaaatc cacaagataa gattatgttt tgacatactt aaacaagcaa tctatatttg
      541 tctccaacaa acaaagctaa ggaaataatg taaccatctt tacacagtaa attaaggtta
      601 caagtcatac acaagaacag aactgcttgc gcattaaaa
//
LOCUS       KCLJ01000630             602 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 71099cal ultra-conserved element locus
            uce-3306, sequence.
ACCESSION   KCLJ01000630
VERSION     KCLJ01000630.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 602)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 602)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..602
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="71099cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>602
                     /note="ultra-conserved element locus uce-3306"
BASE COUNT          146 a          144 c          139 g          173 t
ORIGIN      
        1 gggtgcctct gcaccgatgc taatgaagtg accatctgca atctgcatca aataattata
       61 agctgcctgc cccggctgcg ctccgtgtgc cggcgcaggc gggtgggagg cgcagcgcgg
      121 gctgcgggcg gctggtgggg ggctcgcagg agcggatcat gtccctccct tcaccacgag
      181 gcacacaacc tgctgagcag acaggtgctg gctctgcgga tgtccatggg cgatgaagcc
      241 tggttgtcct agtagctgac atctatatct agatctatct ggatttttaa actgatacaa
      301 catgaagaat gtcactctct gttactgtat gtgtgtatct catggatatc ctttaagcac
      361 aatgccttga ccacgtctgc cctgctttct tcagctgatg ggttttgcca ttgtaatggg
      421 ctattgtttt aatttatcct tcagttcaaa tgcttctgga catgattaca gttagactct
      481 ttccccagaa caactctatt gtttctactt atgcttaaaa acttaagact tcatcttaat
      541 aaagcacagc tattgaaacc aaaataaatt ctgccttaac atgttcaaaa actttagaag
      601 aa
//
LOCUS       KCLJ01000631             640 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 71206cal ultra-conserved element locus
            uce-3777, sequence.
ACCESSION   KCLJ01000631
VERSION     KCLJ01000631.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 640)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 640)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..640
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="71206cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>640
                     /note="ultra-conserved element locus uce-3777"
BASE COUNT          137 a          162 c          137 g          204 t
ORIGIN      
        1 tgtaggggaa gtgtttacct tgagtaattt aggacagatc acctgtggta agaggttaat
       61 ttatcataca catctctgct catctacact tcccattgcc taagtcagct ggcagaggac
      121 atttataaat tcctctgaga ctagagtcat gtatcttttg ttcctgtgcc agcttgcttt
      181 ttccctctac tttatcatgc ttccaacaac atttcattcc tacacttctt gcatggtttg
      241 tatttgctta ttaacatcat tatgcccatc tttcttagtt gcttctctgc tggttctgca
      301 gggtcatccc caacatcatc tcagaatgcc acgctgcctt catcgagtgc ctggccgctt
      361 agtgcctccg gctacagtag ctctttcagc agcattgcat ctgcacctag cattgcaggt
      421 acggcctttc tgcttccaca gcttctgcat tcccaggaaa aggccctagg gagtgctttt
      481 ccagtgctta caggagtgca ggcacaagtg tgttttgtgc tgggtgcagc tctcctggca
      541 gctctggtga gcctgggatt gttggattta ttccacccag ggcctcagca ggaagagctg
      601 atgtgaaatt tgaaactcac tgttaaaagt gaaacacctc
//
LOCUS       KCLJ01000632             491 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 71316cal ultra-conserved element locus
            uce-198, sequence.
ACCESSION   KCLJ01000632
VERSION     KCLJ01000632.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 491)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 491)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..491
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="71316cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>491
                     /note="ultra-conserved element locus uce-198"
BASE COUNT          169 a           79 c           80 g          163 t
ORIGIN      
        1 ttgaaatgca gccaagtagt caagaaaaga ggactctgtg tctttaagct ggggaaaacc
       61 caatcattcc aaatgtattg ctttagtcat ctggtttcat tctattaatg acctttaaca
      121 tctgcaaaaa tattgtgaga agctaatttt gtttgtactg aggtggtgca gaacagtttc
      181 tggctgtcag tctaggatgt gctataaaat aaaattgtct ttctgggagt ctgacaaaaa
      241 cctactgtac agattcagtt tatttacaac agcatgaaat gaaaagaaaa cagaatttta
      301 caacacatca acattcagaa aattaatact acttacacat ttatatatat tttagtaata
      361 agttttcaag atatccactg agattaaggg atctattttg tattttgtgg tagtccacaa
      421 aaattttaac cagagcaaaa tatttctctg caaatgctct tctctagaat tgtaataacc
      481 tattaccctg a
//
LOCUS       KCLJ01000633             586 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 71428cal ultra-conserved element locus
            uce-7712, sequence.
ACCESSION   KCLJ01000633
VERSION     KCLJ01000633.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 586)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 586)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..586
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="71428cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>586
                     /note="ultra-conserved element locus uce-7712"
BASE COUNT          190 a          105 c           86 g          205 t
ORIGIN      
        1 tgacattgag ttattatttc agaaaggcag aaaagagact gttattttat tcatttatat
       61 tccaactgta ttaaatatgc tacttcaaaa cacgactccc ctctttgaaa tgaacaaaat
      121 agtcaaatgc agaagaagct attcaaaatt gtcttttaat aaaagtttaa agtcttcaaa
      181 atatatttgc ccctggagca aacttttttc atttaatatt gtgtctgtta attagtgctt
      241 caaatttgca aattctttat tggtttatat caatgtaata cccaaagctc atctcattgc
      301 cagctttgaa tgaaatatga tcctgtttat tctattaaaa cgaaggcttg aaattgttac
      361 ccaaatgcca caggaattct tgccattttc tcatcaaatt cctcatcaga ttttaaagtc
      421 acattgtttt agattttgag ccttggcatt taaatgaaat tcaatgtgcc ccactggaga
      481 aaacatctgc agggacatat tatgtacaat atccattcca atcaagcagg agtgcactgt
      541 gtgactgaat gagaagctta ttcttactcc acttaggttt accctg
//
LOCUS       KCLJ01000634             778 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 71536cal ultra-conserved element locus
            uce-3024, sequence.
ACCESSION   KCLJ01000634
VERSION     KCLJ01000634.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 778)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 778)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..778
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="71536cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>778
                     /note="ultra-conserved element locus uce-3024"
BASE COUNT          242 a          154 c          152 g          230 t
ORIGIN      
        1 aacattttac aaatctgaca cattttgttc atgcatatca tgttcatttt ctgtaactaa
       61 catggcttcc agcaaaatct ttttctactc caataaatga gacaagtaat tcacaataac
      121 caaaataatt aaatagtagg aacaggttaa agatcagcat tcatttttaa attaaatttg
      181 cagtagttac ttagaagatt ggcaagtttt acaaataacg tcaccaagca ttttagagag
      241 aaacacagcc gcattagaat agagtcatta ggcaatacat ttattttgaa gccaattaac
      301 cttttgtcag agaaatgtcg gagctgtaat ggtttcagca gtggaggtca gcctgtaaca
      361 gaggcacgta tgacagcgat tacgctgtct gacatatgct ggagactcag agcacagccg
      421 tggaatgaga atctgccttc gtttgtattc tgctctgcat tttcagggag cagacaatct
      481 tgacctatcc atttaggtaa ttaaagcttc tatttggaag tgtcctgcag gaaggtgaaa
      541 tctggggaga taaatggctg ctgctcactg tatccagcca cttccatcat ttgatggact
      601 gcctgaaaca ggctgcattg ccaagtcctc ataaaaatag agatgaattg ggcaggagac
      661 aattctctaa ggcaaagcaa ctctgtcatc ttcctttttg cagcatataa tttaattgtt
      721 agccaaggca gacagctgac tcaggggcct ttctctaatg actttcccac catattcc
//
LOCUS       KCLJ01000635             405 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 71744cal ultra-conserved element locus
            uce-1685, sequence.
ACCESSION   KCLJ01000635
VERSION     KCLJ01000635.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 405)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 405)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..405
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="71744cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>405
                     /note="ultra-conserved element locus uce-1685"
BASE COUNT          143 a           56 c           77 g          129 t
ORIGIN      
        1 gtttttctct cttttttttc aatgaagact gtaccaatta tcatttcaac ataaagtatt
       61 aggagatcaa ttgggaactg aatgccattt cctaatgtta atacagtgtt ttatttaagc
      121 tgccttgaca ggctgtctag gctgtgggaa aaagactgag caaataatga gtaaagggtt
      181 tagaaaaaag acagagggtg gagcttggca aacgatgtga gatattcatc aacaactcaa
      241 caaggatgat ggaaataata agtactcctt aaagaaaagg ggaaaggatt ttttttaaag
      301 aaacagtttc caaaaaaata tttaactcta actttgtatt actttctgat tagctgattt
      361 taaacttcct gaaatcagca aaagctttcc tttgaaatgg atagt
//
LOCUS       KCLJ01000636             499 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 71849cal ultra-conserved element locus
            uce-5427, sequence.
ACCESSION   KCLJ01000636
VERSION     KCLJ01000636.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 499)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 499)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..499
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="71849cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>499
                     /note="ultra-conserved element locus uce-5427"
BASE COUNT          142 a          121 c          118 g          118 t
ORIGIN      
        1 attgttcacc cttggatgga gccctgactt ttgtgcctct ccgtggcagt cagacatttt
       61 tattgcaaaa cgccgtctgg aaaagatgca aaacaaaatt gctaaactgc aaaaagaaga
      121 aaagggggga gaaggagcaa aaggccccct tccctttgct tattgagttc aaaggcataa
      181 catgcagcac cctgcagcaa atgggaagct acactaattt taaagccata aaacgctata
      241 aagtgccctg cggggcagga ctacactgga gctagttgca cctaaataag ccatggttca
      301 tttacttcgc agcttagcct aatgtaatca tcagcagatt cctagcctag agttgtaaca
      361 ggcacggagc cgctgccgcc gaggcgacac tcccagccat ggaggggccg ccgccacatc
      421 gccgttgatt agaaaatttt tcagttttga caagccctta atgaacataa atcgctcctt
      481 gattggtttc cgtgtgggg
//
LOCUS       KCLJ01000637             701 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 71959cal ultra-conserved element locus
            uce-6780, sequence.
ACCESSION   KCLJ01000637
VERSION     KCLJ01000637.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 701)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 701)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..701
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="71959cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>701
                     /note="ultra-conserved element locus uce-6780"
BASE COUNT          230 a          105 c          143 g          223 t
ORIGIN      
        1 gtgaaatgtt gcccctgggt gatgggttat gctcacagaa aggatttgaa catccagatt
       61 gcgctgtgcc ctgacagagc ctgcatgcta aaagacctgt tattttttcc tgactctgac
      121 tccaattaat gtacttttta aatgattaaa catatcatgc tgtgacttct gaaatgtcaa
      181 caagcttcga aacttgggag acaggaatgt aataaaatag gtaataggag attcaatagt
      241 taatagaggc cctgaagtgt gagtgtgtac agtagctgta tattggaaac tgtgcaaatg
      301 aagatggctt agtattgcaa actgaggaag aaaattgttt ttaattagca ccttcataag
      361 aactgctgat taatactgtt tggtttggtg aaaagctttc agctgagtaa tttgtacagc
      421 cattacaaca gttttgttag accaggactc ctgttgttaa acacaaacag cagatgataa
      481 tggtggaaga tgagtttgtc atgtaacaat ttaccttatt gaaaaaagct ttatataaaa
      541 cccaatacag taggtactag cagaaatcac atattttaaa tcctttcaag attgcagtgt
      601 gcgattctgg tttttttcat ggaggagaaa cagattttat atcatttata aaattatata
      661 tacaatttaa aggtgttgta gcatggacaa accactttac t
//
LOCUS       KCLJ01000638             460 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 72070cal ultra-conserved element locus
            uce-6069, sequence.
ACCESSION   KCLJ01000638
VERSION     KCLJ01000638.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 460)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 460)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..460
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="72070cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>460
                     /note="ultra-conserved element locus uce-6069"
BASE COUNT          121 a           94 c          105 g          140 t
ORIGIN      
        1 tatatcgcaa tgcataacaa aaccctctgt ctgcagatcc atctttgcta aggtctgcta
       61 cttgttaaat cagtatgaat atctgtcaga gatatcctgc tacaccattt ggctgatgtc
      121 aaacctaaac aaaccagatc agaaaaccag caagtggcag aacataaatg aaacgggaga
      181 agaccagtct aactgtaact cgcatggttt gcttgctgat tttttttggg gagggggtga
      241 ggagggaaat agtggcaatc actgcagtca tttgcagtac taatgtccaa ttcagcctcc
      301 tttcattctc ctgatttagg tggtcagagt ggtttcgtag ccgacacggg gaagctgtgc
      361 tgtttagcag gctgtttaat gggaaactgg cagtcttatt tcttttctag atttggtttg
      421 tcactaggtc tccattacat gccactcagc tttgatgtct
//
LOCUS       KCLJ01000639             600 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 72174cal ultra-conserved element locus
            uce-7314, sequence.
ACCESSION   KCLJ01000639
VERSION     KCLJ01000639.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 600)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 600)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..600
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="72174cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>600
                     /note="ultra-conserved element locus uce-7314"
BASE COUNT          182 a          153 c           95 g          170 t
ORIGIN      
        1 aaacacacaa tctctgcaac cagcacaagg gctggtggca aggtttccct tactttcaaa
       61 aggcacatca ctaaggtgga tttgcttgtc cctgctctaa tgtcatgaaa gctgcccatt
      121 atctcaccca caggtaccgt ctcagttacc tcattgcagg gctcacactc tgcgagagca
      181 agtgttgcca agagatttcc actgcaattt tcaaagtcac atcaaaccga caaaacatca
      241 caacgtattc agtgccgcct cattcaaaca gtttaacttt ccactgtaat taaccctatc
      301 ctcgttaaga taattatgat caagctccct gtcacagcta atatcacagc atcattgcct
      361 atggctcacg ctttgccctc attagcttac aaaaacaccg cgctaaacag gaaactgact
      421 ccctctgcaa aacgacttaa gatgctctgt aagtagacag taaataatcc tttagaatat
      481 aaaggtctca gaaatgtcat tttatcctgg ctaatcagta tgatttcttc cagctttctt
      541 ttccatactt cattcgtggt ttataacaaa gttttaatca taaaggaatg tcatgacaga
//
LOCUS       KCLJ01000640             293 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 72285cal ultra-conserved element locus
            uce-7789, sequence.
ACCESSION   KCLJ01000640
VERSION     KCLJ01000640.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 293)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 293)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..293
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="72285cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>293
                     /note="ultra-conserved element locus uce-7789"
BASE COUNT           88 a           61 c           51 g           93 t
ORIGIN      
        1 cgtgcttcaa atgcagtcac ctgacaaaac agttctaatt attacaccct tgggctaaca
       61 tttttcagag tgactggcta aagtacgctc cagctcataa tttttatctc cgacagtgga
      121 agacataacc tagtttcctc taatgctaat ctagagggca agaccctttt ccatataaca
      181 ttgaagggag aaaatgcaat ttgagcacag ggaaattgcc cacatagttt gatagttcta
      241 ctgttctcac tccaggatta aatgtcttgt tttattttat gctaaattat gac
//
LOCUS       KCLJ01000641             783 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 72389cal ultra-conserved element locus
            uce-5796, sequence.
ACCESSION   KCLJ01000641
VERSION     KCLJ01000641.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 783)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 783)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..783
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="72389cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>783
                     /note="ultra-conserved element locus uce-5796"
BASE COUNT          270 a          149 c          118 g          246 t
ORIGIN      
        1 catttggtac tctattgaag aggcatactc acaacatgag ctacataaac tcattctcta
       61 aatgggaata ttttgagaga tatcaagtac agatgtttca aagtagaatt taagggctcc
      121 atgggtgtcc ccaactggtg atcactctat tataagctta actcttcaca gacagagttc
      181 agattccaaa ttgcccaact ttgcatcaaa caataataac tgtttcgttt caacagttct
      241 ttgcacccac tacctaaaac aaaccgtgaa catctgtaat ttcactgccc aatcctttct
      301 tataccctta caacatttgt tctgctaatg taggttaatt ctgcaaataa cacttctgta
      361 aattgttctt gcaaactgct acatcattta tgtaaggact tctgtgaact ttgaaaaatt
      421 aatgccttta attttggttg atggcaacat cagcagagct ctgtaaattg cactttaatg
      481 agattttgct acaggggata atctgctact gacagagtaa catcttgaaa acatctgtag
      541 acctataatt tttctatgac gattagatcc caccacaaga gtccaaatac agtgcagaaa
      601 taaaggaaaa aatgtaaatg aatatcaaac ctgttcttta aaaagaagag agacacaatg
      661 aaaagtttca tgcactgaaa ataaatcaat ttttctgact aattaacatt tagctttatt
      721 taattaagaa agactattac tgtcttcact gctgtgcatc tgtatataat gaagcaaaca
      781 gca
//
LOCUS       KCLJ01000642             808 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 72499cal ultra-conserved element locus
            uce-958, sequence.
ACCESSION   KCLJ01000642
VERSION     KCLJ01000642.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 808)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 808)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..808
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="72499cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>808
                     /note="ultra-conserved element locus uce-958"
BASE COUNT          256 a          149 c          148 g          255 t
ORIGIN      
        1 tgtgtgcctg ccagtaatgt gatcatggta atgagaaagc tttttaagca aataatccat
       61 gtggttttga taagtaaaca acaaataaac tggtaagaag ctcctttgac tttcaggaaa
      121 ggtgagacgt tataggttca ttaatatgta aagggtagta tgtagatctc aatgaaagtg
      181 acaaacaagt gccacagtgg gtattgctga acacaggaaa tggttggttt gagctaatat
      241 atacttttgg cactacttca tcttaaaatc atacatagca tctagcacca gcaggttggt
      301 tttatagctt catctattac tttactgtca ctgttaattg tcttctttta cctctgcagt
      361 attctacaaa ttgggcctat ccaaagtgac aggaggaaga acattaagca tctgacaaga
      421 tgatatctaa gttcaatttc ctactcttta cctgatttat acctgcagaa gataattttc
      481 ctttctgtca taaacagccc tataaatcag cagtgcttat ggaaccactg catagagagc
      541 ccccagcttt gtatcctctg tgtttcctat taggaagcca ttactgcaga attttcctcc
      601 ttcaaacaaa aatgatgaaa tttaatacca ctgagattac aaagattaag agctgaagta
      661 ctgctgaggc ttttcaattg aagcagctat ctgagcaatc tttgcaaaac tcaataaaaa
      721 cagggtttct gcctttgaca tcattatcca tctgcttgga tgaaattgct gtatcatggt
      781 ataaatctgt gatacaagtg acataacc
//
LOCUS       KCLJ01000643             356 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 72606cal ultra-conserved element locus
            uce-3628, sequence.
ACCESSION   KCLJ01000643
VERSION     KCLJ01000643.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 356)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 356)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..356
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="72606cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>356
                     /note="ultra-conserved element locus uce-3628"
BASE COUNT          133 a           69 c           72 g           82 t
ORIGIN      
        1 cacatggctg agaaatggca aggtgccaaa atgaaactgc tcctaatttt cagaggaggc
       61 caccggctaa ttacacagac tgcaggtgtg aagagagaag ctcaaagtaa tcaatagtag
      121 taattaatct gctagactgg agctaaagag ctaacagctg gacatcagaa atggacacat
      181 gcaacaagat cagcaataat tacctcttta aatattgaat ttccatagca acaattaagc
      241 atataaataa aggcttgaaa tcaaggttcc gaggcatgat gctgaattgc aaacacaaca
      301 ttctccgaat caaccctttt aataaaacag taacaatatg cttgggctgg gtcgac
//
LOCUS       KCLJ01000644             667 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 72703cal ultra-conserved element locus
            uce-6554, sequence.
ACCESSION   KCLJ01000644
VERSION     KCLJ01000644.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 667)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 667)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..667
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="72703cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>667
                     /note="ultra-conserved element locus uce-6554"
BASE COUNT          231 a          118 c          135 g          183 t
ORIGIN      
        1 gagaaagagc actgactatc aagttgatgg caacttgagc caatatatac attctcagta
       61 gaaaacactg tatgaaaaca aatctaagct aaaaatgtaa taagcagcct tagcagttac
      121 atgttaagca gttcaaaccg tactccaaag acatagccac tgaataaaca agaagatagt
      181 atttctgaag tagaattaaa tagctcaaag cagttttcaa aaagcaaaaa aacaggggag
      241 aaaaaaaagc aaaccaaacc cttttaggga ttactctgag gagtttattt actgtgtctt
      301 ttccataaag gatatatgga aatcagagag ctacagacac cactcatggc ctgttttgaa
      361 attcaaaaaa gagggggagg gaagagaaaa ctatattgtc ctttccaggc agaaagatgc
      421 tttccatttt ttctcaccat gactgtcata gtaatctgat atgacaaatt cacatacagt
      481 ggattagcag ccagtggaga aagcctaagc ggttaatatt tgttgatgtt gcttttatct
      541 agcaggtttg tgtccctggg ctgtggttac cttggcaata cggatataac cattttctga
      601 agctgttaaa aatgccaagg agattctctc ttcaaaattc cagggcctgc gggctgcttg
      661 tcatttt
//
LOCUS       KCLJ01000645             431 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 72799cal ultra-conserved element locus
            uce-1679, sequence.
ACCESSION   KCLJ01000645
VERSION     KCLJ01000645.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 431)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 431)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..431
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="72799cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>431
                     /note="ultra-conserved element locus uce-1679"
BASE COUNT          123 a           76 c           77 g          155 t
ORIGIN      
        1 atatatatat tgacctacct ctagcatcat ttaaagggta taacaaaact acaattagtg
       61 ctgtgtaagt taatcttgcc ttttaagtta caaaagcatt gctgttttgt tattttattg
      121 atcaactttc atgcctttga aaatacaaat tccagaatga catcatgccc agtaggagta
      181 attaaagcta tctgatgagg gaatttagaa gctgaaaggg atgattgtaa ttgatcctga
      241 ttcaatccta ttacagcttt ttatagttta agctctagag aaagcaaact ccttgtcaag
      301 gctttatttt acggattcct ttgtgtgtgc tatgctctct actttccctt ttaatttttt
      361 ttctcctgta gtaaataatg agctgccgcc tgaaatccgg cttgccagtg gtcagctaat
      421 gggtgatgac c
//
LOCUS       KCLJ01000646             718 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 72910cal ultra-conserved element locus
            uce-7077, sequence.
ACCESSION   KCLJ01000646
VERSION     KCLJ01000646.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 718)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 718)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..718
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="72910cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>718
                     /note="ultra-conserved element locus uce-7077"
BASE COUNT          233 a          165 c          152 g          168 t
ORIGIN      
        1 agtagtttat taatgccctc aaaacacaga aacaaatgct cagccctgga aggagagtgg
       61 ggaagctgca gagtagtaac aaactcagca accctacgac tctctctctc tgatcccatt
      121 ataaactaac acaatatttt tctccaattt tcagtcggta ttgcagctca cagcagaaaa
      181 gataccgaaa gcagcaggag ccaggcagag gtgtcagact tcagagcgga cactgccttg
      241 ggacctgggg gggccagtaa atcagtgcac gcttgtcaac agctccaagc tgcaggaatt
      301 actcgagcga aaataacaaa tggctgtcat tgtggagcca aaaacctgtg attataatta
      361 tcacatcccc agtgaccttg cataaacttt aatccctctc caatggagca tttaaatagc
      421 ctgcatctac tggcagggga ccgtgtcccc ttagttgaaa atacagagag taggaaagaa
      481 acgagccaca aagaaagcac cgagcccctc tgtgtcttac agcttgtatt gaagagttgt
      541 acaagaaaag ccctgtcact gtcattttaa ttgatattac atagtcatcc caaattcaaa
      601 atgccacggt ggtgtccaaa ctcgctaatc ccagaagcat tttaatcaga tgaaaaggtc
      661 aaataacacc aagttttcat cactgcattc agaaagaggg tatacaaggt gtgtggat
//
LOCUS       KCLJ01000647             651 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 73021cal ultra-conserved element locus
            uce-1749, sequence.
ACCESSION   KCLJ01000647
VERSION     KCLJ01000647.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 651)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 651)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..651
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="73021cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>651
                     /note="ultra-conserved element locus uce-1749"
BASE COUNT          204 a           99 c          122 g          226 t
ORIGIN      
        1 ttctggtgtc attcagaaca cagcagaatc ctgaggtgtt aaatctttta tgtagccata
       61 atggtgccaa cttgaacaaa tgtttcatca gaagttagct tttccgatat gcactatagt
      121 aaggtatatt aattgaaaac cactgcttct ttttagtaca tctccaaggt atcaatttaa
      181 taactatcaa agtagctagt gcagttgttg catttaaatt gatttacatg tcaagactgg
      241 cagtttagca gctgcgctat tattcctgga ttggtcaatt tacttgagaa aaacctacta
      301 ctgagttcta ctgacctgca tgacaatata ggccctattt ctattcctgt aattaggcct
      361 gcgactaact cagaatattt ttaattaaaa tattttggtc aatgtgttgc accaaattag
      421 gcctttcagt gcagatttaa ttctggaaat ggtgtgatta gaatatgtaa tgagttgtgt
      481 tcaatttaag attaacaggt tgtgcatctt gaacatacag atactgtaga gatttactct
      541 gaagagttaa aaaaaaattg gtttgcatgt ttgtggtttg taaattgtta aatactgtga
      601 ataaaagacc tcagacgttt caagatactt caagacattt gtgtgaagga a
//
LOCUS       KCLJ01000648             351 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 73132cal ultra-conserved element locus
            uce-6668, sequence.
ACCESSION   KCLJ01000648
VERSION     KCLJ01000648.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 351)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 351)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..351
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="73132cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>351
                     /note="ultra-conserved element locus uce-6668"
BASE COUNT          100 a           86 c           87 g           78 t
ORIGIN      
        1 tgctcctcag acccccaacc tcgtgaagtg aaaagtgtgc agcggggact gctccatttg
       61 ctctgtgtgg ccataatggg gttatttatg gtacgtgtag gaaagattaa aggttttcat
      121 aataaaggaa agcgagagct caagaactgg gtgcctccta acagcactga ctctcgagac
      181 aggataaatc accccagcaa ccattaaaac ttcaggaaga ttgcttgtaa acctccaagc
      241 catgccaata aagcatattc cttgccacag agcagcccag atggtggagc tcagcagttt
      301 tctcacagtt gaaccctggt gcctcagagg gcacagtgcc aggggagcac t
//
LOCUS       KCLJ01000649             766 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 73237cal ultra-conserved element locus
            uce-7135, sequence.
ACCESSION   KCLJ01000649
VERSION     KCLJ01000649.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 766)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 766)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..766
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="73237cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>766
                     /note="ultra-conserved element locus uce-7135"
BASE COUNT          263 a          152 c          127 g          224 t
ORIGIN      
        1 catttttaaa ccctgtcata taatttataa ccattatgta ctaatcattc cttgatgaaa
       61 ctttcattta taagactgaa ttaatgtcat ttcgattagg cctgtctcag gatattaaaa
      121 ctgaccacca ggtttattca cttgctagca gttaagtaac ttactttctt ttagactgtt
      181 ttatactaaa catcatagaa ggtcagctac tgacaaatca gaatgaaaca gatgcatgta
      241 aataaaacat aaaaatggca aaagaaatat atttgctaag tcatatactt accattagca
      301 ctgcaaagtt actgaagtgt gtactctgaa tggtggtaat attgcctgca gaactaatta
      361 tgtggcaccc ttctccccac cagcctccat gtccatctag aaggtcaaaa tcccagaagg
      421 ctgcaatggg gtctataccc cgtgcaaagt gcctcaatcc tatagtaaga gggctagtga
      481 ggtttccgaa actgcaccca tctgcaaaag gaaaaaactg aatcagagac aaaacccttt
      541 agtgatgaat gctctgtaaa gagaacacta aactaaaaag ccagcggaca taaaatctta
      601 aaatcaaagg tagtgctcac atcggagaag tttgcaatgg tataaatctg agcatttcaa
      661 tcacgtattg tgtcaaaatg atccaataac tcctcacaaa ggagatcttt tttattgttt
      721 cagagtcttc atttatgacc agtattacac tattgcccat gtaact
//
LOCUS       KCLJ01000650             781 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 73349cal ultra-conserved element locus
            uce-1817, sequence.
ACCESSION   KCLJ01000650
VERSION     KCLJ01000650.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 781)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 781)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..781
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="73349cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>781
                     /note="ultra-conserved element locus uce-1817"
BASE COUNT          222 a          173 c          175 g          211 t
ORIGIN      
        1 acatttacag ctctcccaag ctgagggggc gtctgaggtt ttactgtccc ctttggctgc
       61 ttgtctcgat atgtggaggg gcatataaag actggagatt aaaaaagtta ccatttcaac
      121 gtgggaataa atccagaggc aagggtgggc cacaggagcc acagcgctga ctgccctcct
      181 ggcctgggaa cgcagcatca atggaccata agtgctcctg caatggcact ggatccgtgg
      241 cagctgtttg ttcaatgttt catgctttta gccacatctg ttccaaatga gtgttaatat
      301 tgcagtggca tccactaagg atgggctctg tcagctctgc tgagcgtcag gctgaccctg
      361 gtgacaagga aagagcagtt cagcccacag tgctccctct ccctccgtat ccatcttgcc
      421 tggctccgct ccatcagaaa agaaaaggga aaactaaggc agtgattctc aaggagaaag
      481 attgcattta ttcctagcac cctgtccagc aatgtcagat aacagtttat tcatcccctg
      541 gcccctgtat gacattgaag catatcaaca gtgacaaaag tatattgaat aattatcttg
      601 aaattaatac attatcccaa acttaaataa atgtcatctg atcaatatat cttggaatgg
      661 aaagggaaga gaatgtgaag ggcatcgctt cattattcat taattttaga gtaatgtagg
      721 cagatgaaat ggttatttca gagcactgct attatactca ctggcatttt aaataactcc
      781 c
//
LOCUS       KCLJ01000651             598 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 73452cal ultra-conserved element locus
            uce-3264, sequence.
ACCESSION   KCLJ01000651
VERSION     KCLJ01000651.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 598)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 598)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..598
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="73452cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>598
                     /note="ultra-conserved element locus uce-3264"
BASE COUNT          164 a          121 c          141 g          172 t
ORIGIN      
        1 tttttattat gaaatggcta aaggcttccc catgcacttc cagtttcacc cactacctca
       61 tgctggcggt aaatagtctg caaaaaatgt catttgctgg tggattgttt ttctgtttat
      121 tggaggtgac atgagcagtg gggcagcggc aaagaggccg tgttgccatt gctaaatata
      181 catccctgac agtctgataa tgggttccag gaagttcagt ggaaaattaa aacaaagcaa
      241 catttatagc tgattgaact tgaaaagcag ttttcatgtt gaatggcaaa tatgtggact
      301 tcagcattcc aggagactga tgcagctcca ctggatgggc ctgaccttgt gtgcagaatg
      361 gactgtggac acagcagcag gcagaatggc ttcatctata gaggacttca tggggaggaa
      421 aaatttgcta tcgtgcacag aaatagttct cacatacgct tatatttata cagtgtccac
      481 aggtctgaat agcatctttc gtgtgagggt tttgcagcct gttagcacta caagaatgtc
      541 tggtactggg actgtctttg tccctgccaa agcactaaaa atacccttcc atctatcc
//
LOCUS       KCLJ01000652             416 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 73560cal ultra-conserved element locus
            uce-1430, sequence.
ACCESSION   KCLJ01000652
VERSION     KCLJ01000652.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 416)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 416)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..416
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="73560cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>416
                     /note="ultra-conserved element locus uce-1430"
BASE COUNT          144 a           78 c           79 g          115 t
ORIGIN      
        1 tttttttttt tcaccagctc caaatccccg gcatatgacc ttctgttaaa tagataaaaa
       61 aaaatttgct tatcagtcat gcaaatgagg ctgaattcat tttccacaac agatggcctc
      121 atagataatg atgatggaag agagaaaatt gaatgtctct cacaaggtgg tcatggcaac
      181 cgagagcaga ataatatcaa taataagctc actgcataat aaggttgtca atcccacaaa
      241 tcaaagtctc cagctaaatc aggtatccca ccccccgcta gttatcaggt aaatagagaa
      301 atagagagca tcctttttct ttttaaacaa gacactggga agaaattgta gctccagagc
      361 ttccagggta agaggggaag gaaggagcaa taattatgtt ttatttaatg attctg
//
LOCUS       KCLJ01000653             570 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 73671cal ultra-conserved element locus
            uce-5192, sequence.
ACCESSION   KCLJ01000653
VERSION     KCLJ01000653.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 570)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 570)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..570
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="73671cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>570
                     /note="ultra-conserved element locus uce-5192"
BASE COUNT          152 a          122 c          154 g          142 t
ORIGIN      
        1 cctgccgagc tgcccttgtg gctgccagcc tgactttgag gtcctcatta ttgtgggttt
       61 aaatgaagga tgttcatcca ggcagggcgg gggaggccaa tagacatcgg tgccgttatc
      121 tggtccttct atcaggccaa gtgacaggct tctcagggaa gaatgcaaag ctcatggtgg
      181 agacctcagc ctgacacaga aggtgactcc cctgactcta accttgaaag gaaaaagttc
      241 ccactttatt aaaatgaatt tcgaaagggc cgctctgaca gctgcataat taaatattgg
      301 agtgtcagcg ataatttatt ctgctcgcat ttggtggtca gagcctgctc actgtagggt
      361 cagcaagcac agtgacagag ccaaggatac actgcattac ggggcccttt agccatgcca
      421 gtgaaaggag agactgtaat ttttatttaa atagagaaaa caaagcagca aggaggtgag
      481 cagtgctctc agtagcaaaa attgtgaggg aaaacgttgg aacttgtgct gaaatttgtc
      541 tggctccggg cattgtgtca gcctggtctc
//
LOCUS       KCLJ01000654             741 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 73779cal ultra-conserved element locus
            uce-65, sequence.
ACCESSION   KCLJ01000654
VERSION     KCLJ01000654.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 741)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 741)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..741
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="73779cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>741
                     /note="ultra-conserved element locus uce-65"
BASE COUNT          229 a          137 c          116 g          259 t
ORIGIN      
        1 agtaatggtc tttaatggaa ctcttgtcta aattattttc ccaaaagtga taatataagt
       61 gcaagtcctt atccttagtg tcttagtcta gactgaagta agagactcca ggtcagacat
      121 atggtgacaa aaagtgcatt ttatttattc atatatctta atgggaaatg tgtatttgaa
      181 atgactagcc aattactctc agtttttaat tctggcaata cattttcatt gttctaaggg
      241 ttaaaaacct caccgtgaca atgatgagcc ttattactca gtcaaagtaa atggatcacc
      301 atataacctt tcagaaatgt tcttccttaa gctattaaaa cattccatgc ccttagatga
      361 caacaatttc tctgcctttt gaaatttctt ttctatcctg cagagttcat agagatatgc
      421 ttggttaaaa tcaacttata taaaactatg cactgtaaat tctgacactt ctgtttgaat
      481 ctcttttcaa acacttgtct ttgctcacca taatagatgt cagttcttct gatgtagttc
      541 aagcatgagc ttcatatgaa gactcagcta tgtctattgc atttctgaag ctactactca
      601 ctgaagtttt gtgctgtttg acatcaaaga taggcaagaa tcacctgctg agttcacatg
      661 catggagcaa aacatcttca aatcacttgt gctagacaaa agtttttcat attaagcttt
      721 cactatcatg tggacttaaa g
//
LOCUS       KCLJ01000655             386 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 73889cal ultra-conserved element locus
            uce-4417, sequence.
ACCESSION   KCLJ01000655
VERSION     KCLJ01000655.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 386)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 386)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..386
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="73889cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>386
                     /note="ultra-conserved element locus uce-4417"
BASE COUNT          111 a           71 c           62 g          142 t
ORIGIN      
        1 catgcagggc ttgaaacagg aacctgattc aataactcat gcatttattt ttaaaatgaa
       61 tcagattagt cccatgtgtg acctgccggt ccatctgtat gagctggact taatgggcac
      121 tcttctcacg cttacttcag tttgaagtat gagagagata aatttagttt aattttcaac
      181 agatcaagct atccattttc caaatggacc atctggatca gcctattaaa attaatttat
      241 aactttgcag tgtgaaaatt cgtttgttag cttaaataaa gttgccaaaa acttttgcca
      301 cttgtcattg tttttttctg gtctgttttc atactatgat tttcagttta tcccttcaaa
      361 atttaatttt gtcagatcaa gcactc
//
LOCUS       KCLJ01000656             589 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 73998cal ultra-conserved element locus
            uce-4312, sequence.
ACCESSION   KCLJ01000656
VERSION     KCLJ01000656.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 589)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 589)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..589
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="73998cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>589
                     /note="ultra-conserved element locus uce-4312"
BASE COUNT          187 a          129 c          110 g          163 t
ORIGIN      
        1 caagcactgt gttgccagga ctccaggact ctttccacaa acgtactaca caaaaccagc
       61 acaaaccttc aacagaatat gcagaagaac aaagtaaaat gaggagaaca gggatgcata
      121 gaaagaaatc aaaggctacc ttctgagctt tgccaaaagc atacgctttc attcggaatg
      181 cagtgcgaaa acgctcctta ttattcaaga caacattctt aggctctttt gaaggacttt
      241 cttcaatggc atctacattc agaggggtaa atagctttcc tttagtattg gtaccacgaa
      301 cccgatccaa gagacccagc ttttggctac aaaataagca aaagtaatca ttttcctcct
      361 ttgtacacca ttaacttgtt ttcatgatgc tttgtatata acgggctttt tgtatacaag
      421 gacactgctg gggctaccat aatgcctttg taagcaacag ttaaggtcca cagataatta
      481 atttttatga gcatatcaat gttgaaaatg ttaccagagg gtctgctatc ctctccatgc
      541 aaggcagtgc ttcagctcat gtagcacacc cgaagcagta gttttatta
//
LOCUS       KCLJ01000657             415 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 74102cal ultra-conserved element locus
            uce-2703, sequence.
ACCESSION   KCLJ01000657
VERSION     KCLJ01000657.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 415)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 415)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..415
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="74102cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>415
                     /note="ultra-conserved element locus uce-2703"
BASE COUNT          118 a           78 c           90 g          129 t
ORIGIN      
        1 cgatccgcaa agctttttga agtcctaatg aacctgattg caggaacatt tataatcccc
       61 catggcttta aatgaaatca gatataatca ggagctatgg ggaaagggag tgtttacagg
      121 cagagattgg gaagtgctgc tgtattagca aagatgctgc tccttctatt gatgtctaaa
      181 atgatggata atgtgagaat ggcaaatata ctatttgtct aatggctctg caattaaatt
      241 cccctgtaaa tgacccatgc ctcatttcat cctaatctat ggaattttga ttgaattcgt
      301 cagctctaat tgaaaaatac tgcactttaa tgtctgcact gcagtttcag gaccgcgctg
      361 gttttaatga gacggtgccc ctctgacccg ggaatatttt agacttttag tcggg
//
LOCUS       KCLJ01000658             600 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 74206cal ultra-conserved element locus
            uce-4522, sequence.
ACCESSION   KCLJ01000658
VERSION     KCLJ01000658.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 600)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 600)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..600
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="74206cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>600
                     /note="ultra-conserved element locus uce-4522"
BASE COUNT          172 a          103 c          126 g          199 t
ORIGIN      
        1 gcttgtgtga cagcaaacac cctggtagtt gtttgattgc tgtctgggtc aagagatcag
       61 cgttttctac aagatgtagt gtgttagtgg acaggttaga aagcaaatta cagctgcctt
      121 tcttaggcat attgctgtcg aggctcattg ttttgggttt ttactgtaca tcagcaataa
      181 tacagcttct gaagactgca tgtgacaggt taggcatttt atcctttgag taaacagtaa
      241 tcatggtgtg aagaaagtgg ggcattggag atttttccca ttctttgaga tttccattct
      301 tcctttctag tttgctccaa gggctctttg gggatacata tattaagccc tttaaatagt
      361 tcataataaa tctttgtctc gggttgattc tgacagtttt ttaaagagtc ttttaagaga
      421 caatcctcaa tcatttacta atccatgggg tgatcttcag acttggagaa aaagaaacag
      481 ttcaagctcc aggattgtga agatacaatg tagaaaaatt ttaactcaga aaaactcaga
      541 aaatacggaa atttcaccag tccatgttct gacagtgcct aaaagctcat tctgcaattt
//
LOCUS       KCLJ01000659             732 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 74314cal ultra-conserved element locus
            uce-2299, sequence.
ACCESSION   KCLJ01000659
VERSION     KCLJ01000659.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 732)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 732)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..732
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="74314cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>732
                     /note="ultra-conserved element locus uce-2299"
BASE COUNT          242 a          118 c          138 g          234 t
ORIGIN      
        1 agctgtgatt gaggtcttag atctatgaat atataatact atatttgcag atgttatggt
       61 taaaaggaca aggagggata tatgttaata atactttgtt tctgctatat tagtagcagc
      121 ttgctaaagt ggcctgccat caaacagtat ttatagcaat gtataaaaca cattagtgac
      181 atccctttta aattcaaaag ctttagctaa tattactgtc tgcattcaaa gcagagctca
      241 gtgcctaaaa gctggtcaat aaacatttta gtactgctct attccagtga tctgaattca
      301 ataatgttac ctttccagaa gctgcaaaat ggaaagtgaa agaatgattt atgaagctta
      361 gctacgcatg gccagataag aaagctttaa ctgatgcttg caggattctc tttaatgaag
      421 tacaagttgc caagataagt ttaggtaaat gaagcctctg tcacaatatg ttacagcaaa
      481 agaaatgaca gagacagcag agcagatgga ggttattaca gaacagtggt gtcaagaatt
      541 gtagtctagg taactgcaca aagacaacag atgcattgga tttgttatta atgatttcat
      601 gatagcagtg agtatttcta gaatctgttt aaattaagcc tagcaaggtt cttcccttaa
      661 attgtcattt agtcttcatt gagctcatat tattcagcca tcactctctt ttgaatagaa
      721 tcctcctctt tc
//
LOCUS       KCLJ01000660             833 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 74425cal ultra-conserved element locus
            uce-1865, sequence.
ACCESSION   KCLJ01000660
VERSION     KCLJ01000660.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 833)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 833)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..833
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="74425cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>833
                     /note="ultra-conserved element locus uce-1865"
BASE COUNT          292 a          134 c          164 g          243 t
ORIGIN      
        1 tgcacatgcc agtattttgg gaagaaggag gaaacagaaa atgcaaaatg aatctaaaac
       61 acatttgatt ctttaaatct ataataaatc taaatgattt accagaacat aaaattctca
      121 catgcagagt caaggactga atattctatt catgtgcaag agtcacttat tcatttataa
      181 ttagataaaa tgaaccgcaa ttttttaaga aaaaaatttg catgtggcaa cagtaatgta
      241 ttaaagggta gcactttgtt accatccatt tgttagtcag gacactggag ctgcaattta
      301 atagacaaga aataagtaca gtagaggaag ggaaaaaatt aaattccgcg tgatcagcaa
      361 ggtttcgaac aatcgctagc caactgaagt gggtgccata tctataagtc attttgtttt
      421 ataggccatt aggatctcct gagagaggct gcatggagac cgctgctttt tgttgaaatt
      481 aaaatgtcag agaaaaagaa atagaacaaa acagggaatc tgcaattaat tacaaggcca
      541 taaaaattca ataatcagga ggcagtgctg ctgtaggcac agcggtatct gattcaggct
      601 aacaggaatg gaatacatta atcttttcaa attagttttt taatctgaca gggatatata
      661 gtgacgtgtt cttttactgt ttgagcagag ccgctgtcta atatataatg ctgagtgtct
      721 ggaattagga catctatggc cgttttgtga ctacaacatt tgcacggcat ttattcaacc
      781 ctatctgtac acctgtccta cagtaatcag gcaaaacatg ttcaaagttc ata
//
LOCUS       KCLJ01000661             597 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 74537cal ultra-conserved element locus
            uce-5732, sequence.
ACCESSION   KCLJ01000661
VERSION     KCLJ01000661.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 597)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 597)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..597
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="74537cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>597
                     /note="ultra-conserved element locus uce-5732"
BASE COUNT          190 a          109 c          125 g          173 t
ORIGIN      
        1 tgtggcttca aatttacaac caggacatat aatctcattg taaggagaga gtcaagttca
       61 agaacttagc ctctacagta aagctctcat tttaactaaa gaagctgagg tcgacggcct
      121 ctcaaatgaa acagataagg cgacataggg ttcttgtcag aaacaaatgt tatgtctctc
      181 cctactgaaa agcttaaaga tattatcagc aaaagcctag ttgggcctga aatgggtccc
      241 agagaagtaa tattaaccag gctcctggca gatcatttat ttatctcaag ctaaattcaa
      301 taaagagagc catatataag tgagggaaaa taatgcagct gctagtaatt tatcattgga
      361 tggaaagtca ttgttatcct tatctctcca atgatgttct atttccaact ggtaatgaat
      421 tatggggctt gccacatctt tactatgtga caggtcaaca ctactcatgg gtactgtact
      481 gtatttatgc aatcaataga gagcttgaaa atattggcaa cctttttgca agagtgacct
      541 ggggcggtgg tggtcagtgg atggagcagc atttctctgc tcctttaaaa caaagat
//
LOCUS       KCLJ01000662             572 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 74645cal ultra-conserved element locus
            uce-7214, sequence.
ACCESSION   KCLJ01000662
VERSION     KCLJ01000662.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 572)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 572)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..572
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="74645cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>572
                     /note="ultra-conserved element locus uce-7214"
BASE COUNT          189 a          105 c           91 g          187 t
ORIGIN      
        1 gaatcaagga cttgttttta aactctcaat ggaaattgac ttcataggaa tgcaacttca
       61 ctgcttataa atgtttgtaa ttcagcttaa aattcttctt ttttaaacaa taaaaaatag
      121 tccttgatat tgaaaatgtt aacatcattt gccattagtc agaagtgtaa cttcattaaa
      181 gcagaaggcc atataatccc tacaggagct ctctgcagga aatactttat tcttacttag
      241 catatctgtg aattctatca gcattagtgt ctttcacaat gtttgtttct cctgaatatt
      301 tatgaaggac tgtccagtga cctgcttaga atctccaggt ttgttctgcc ttaacaatct
      361 ctcaagtaga atgcaatcag aagactcatt ctccttcaac agcagcgatc aatatggcag
      421 aggccaagga aatgtctgca gaaaagagat ttctatcaat gaaatggaag aaagaaaaca
      481 aaatatagga ttggacttaa tacctaagtc atggtagtct ctcctttgtt catctttgtg
      541 taattcatca ctacattaaa acgttcacta ca
//
LOCUS       KCLJ01000663             817 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 74865cal ultra-conserved element locus
            uce-2125, sequence.
ACCESSION   KCLJ01000663
VERSION     KCLJ01000663.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 817)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 817)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..817
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="74865cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>817
                     /note="ultra-conserved element locus uce-2125"
BASE COUNT          233 a          134 c          185 g          265 t
ORIGIN      
        1 ggtgccgggc tgggaagcac ctttgtgata cagcttctgt gtaaggtgaa cgtacctgag
       61 ggggagagcg ctactgtgtc ccgtggaagg ttaacatgaa gtgagctttt aattaagtgg
      121 ggaaaaaggg ggcattttac ttcaatcaga ttaaattggc tctctcttca gtgtacgaat
      181 gataccaaag tagcactggg tcaaaagatc tgagatcgct catttgcagt acagcagcaa
      241 tatggtttac aggtaatact attatcaacc tactttttta actatctgtt agactaactt
      301 gtttaaatga gaaaggaagc cctgggcaca aagggatctt catgttcatt tggtgtatta
      361 ggagaggcac ccagttaaag agtgttcatt actattgtaa attcctgccc cagggcttgt
      421 atccttgcac tagattacat gaggtctatg ttcatggaca gcgtttggcg tctgattgaa
      481 ggtccagcgc agctaattaa tttcattagg aagtgaagtc atcttctagc aggaattaat
      541 atttggagct tcgtgttgct aattcatttc cagatttaat tagctcagag aagaaatgtt
      601 gcttgggcaa gaggactttt taattatcag cttggataaa tttgaaaatg ttgatgccta
      661 ggggttgagt taattaaaac ctgcattatt ttaactttaa ttagctccca tctttgtttt
      721 gcttcaccat atggccatgt cctgtagtca aatttagtta attaagctaa ttaagctaat
      781 cattttaatt actcaagaca atatgattgg atagagg
//
LOCUS       KCLJ01000664             641 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 74979cal ultra-conserved element locus
            uce-1809, sequence.
ACCESSION   KCLJ01000664
VERSION     KCLJ01000664.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 641)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 641)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..641
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="74979cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>641
                     /note="ultra-conserved element locus uce-1809"
BASE COUNT          193 a          109 c          137 g          202 t
ORIGIN      
        1 tatctggcat actgaaaagc tatgctaaga aagaatataa tgaatgatgg agttcttttt
       61 gcttctggca actataggcc ttttctgaat acagcaaatg actgtttcaa aatgaaaacc
      121 actatgtgtt tgaatgtagt attatgccta gttgcttttt gagtgaaagg cggctttaaa
      181 aagttaggta tatcattgcc aaaaagggct acatagtatt gtcagcattt tgagaaggaa
      241 taggtccttt ttttcctgaa actccattct ggacagctgt tagtgactta ccaaactttt
      301 catatggata tgtatgttaa tgacaggcaa tgaactggag atgaagagac ccaaacacag
      361 accgatctct tcagtgcaca tcaaaagcct ttacaaaagg agcagtaaaa gaggcagtga
      421 tggtggagcc ttcacttttg tacactgaat tagttctgca agcaatgaaa ctgatctttt
      481 ctccttgcca gaaaagtctg gtgatttttg tgagtgctca ttagcacaag aggcatttgt
      541 gaagataatt gactgacgct gatactgctg gctgtcacaa cagtgccagc agtgtatgtg
      601 cgtttttaat agttgtaccc ctttcttaga tataatgctt t
//
LOCUS       KCLJ01000665             750 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 75089cal ultra-conserved element locus
            uce-2487, sequence.
ACCESSION   KCLJ01000665
VERSION     KCLJ01000665.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 750)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 750)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..750
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="75089cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>750
                     /note="ultra-conserved element locus uce-2487"
BASE COUNT          234 a          130 c          152 g          234 t
ORIGIN      
        1 caatataatt cagtctattt ttgctattaa tacaaatgct tcctgctgtt ctgaaaatcc
       61 accatttctt aatccagcat tattgtcctc ttaatgcaac atttcaaccc atttcgctcc
      121 attttctgtt agaaaagaaa aaggaagatt aaaaaggaac caggtatcat tggttcatat
      181 gcatatgggt tcagcatgtg aggatgctgt ttctaggact ggccttaaga tgtgactgat
      241 agatcttatt tgtctgatag agttgaccag ggaaatagag ctacagctgg ttacttcatt
      301 aggtcctctc attgattgaa ccctgctgaa gtgatgcagc aggctcctga gataactgct
      361 ggtaatagaa caaaatgaat tcttatcaca gagattggaa aggccattaa ccctggcctc
      421 caatgctttt cagaggtcac agacaggaag ccaagcggtg actgggaaaa ctgttttgtg
      481 tctaactaca ggtcatgtta gagggggtct gtgacttttt tacccttcgg cttctgtaca
      541 gatgaaactg ttacactggc agatgttaat aatcagctgt aaataaatat tggaagcaga
      601 agaagaaaaa tgagaaagca caggaatttt tttcaataaa tatttaataa aagagcaatt
      661 gtttctgtga tatttactgc cagttctgct gtagattttt gcctaatact tttccatata
      721 aattgaaaag agaaatacgt agaggcactt
//
LOCUS       KCLJ01000666             593 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 75201cal ultra-conserved element locus
            uce-7163, sequence.
ACCESSION   KCLJ01000666
VERSION     KCLJ01000666.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 593)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 593)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..593
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="75201cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>593
                     /note="ultra-conserved element locus uce-7163"
BASE COUNT          164 a          159 c          155 g          115 t
ORIGIN      
        1 caagtcacca aggagcacag actgaggggc acccgaggaa caatcaccct acagacctag
       61 ggaagtagag acaggactgc tgcaaaggga cagacaccag aaccaaagga ataagctaca
      121 gacgggtcct ctattgccca agggaaggag gagacaccac acagtggcca gctgcaaaag
      181 gccagtggga ggcaggactt actcatcttt ttacacacag ccatacaata ctcctctgac
      241 tcaaaattgt tcctgttgcc accgcagcct ccatatataa agcgaatgca ttttctcttg
      301 ttaggatcga agtaccaacg aggcatcaca gcccggcagg gccctgtcat ggcctcctgg
      361 gagcagacag ctgtgtggag atgggtgaga acatgagctg aggagcacag gccttgccga
      421 gcgatttaca ggtggctcta cttcactcta aggcacggcc tcaacatggc tgctgcacca
      481 acccaagggc ttctgtcaga catgccaaca caagctggtt gggcgtggtg ctttggagat
      541 agctaagcag ctcactcctc taaattgagc tctcatctgt gagagatttc tcc
//
LOCUS       KCLJ01000667             653 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 75310cal ultra-conserved element locus
            uce-7472, sequence.
ACCESSION   KCLJ01000667
VERSION     KCLJ01000667.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 653)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 653)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..653
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="75310cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>653
                     /note="ultra-conserved element locus uce-7472"
BASE COUNT          183 a          129 c          122 g          219 t
ORIGIN      
        1 cccactgctg gctttacatc tcagctaaat ttgaattgat gatgggtaca gtgtttgtaa
       61 tcctacatca agcagcgctt gtgtctggca tttatttgtc ctgttgcttt ggcagcttct
      121 tccagagcct cctctcatct gacatgtcag gtctacaatc aaagaggaat agtgaattca
      181 cttttacagt taggcaagct gaatgctatt acccatgtat ttgtcaccaa cctgcagatc
      241 ccagcctcta atctgccatc tggatggatg ctacaaagtt aagagccagg gacatgcatt
      301 tctcagtaac tacctgctgt cagctattat tttaaggatc ctgtgatttt cttttatttt
      361 gactagaaaa aacaaggcag ctgcagtaat aaaaaggcat atcaactagt cacttcctgg
      421 cagatttgtc actggtgtgg atacagcagt ggtatttttt gttagcaaat gtatacagtg
      481 gaatatagta ttgtaaatct gtagtgcgtt cttcacaaag gacccttttt agaaccttgt
      541 atacagtcaa caaaataaac gtatttgctc tcaccttatt gtgcacatgt attatatttt
      601 acaatattgt ccattgtgtg caacagactt tgtaaatatc gtgattttaa aaa
//
LOCUS       KCLJ01000668             945 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 75418cal ultra-conserved element locus
            uce-396, sequence.
ACCESSION   KCLJ01000668
VERSION     KCLJ01000668.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 945)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 945)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..945
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="75418cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>945
                     /note="ultra-conserved element locus uce-396"
BASE COUNT          293 a          172 c          180 g          300 t
ORIGIN      
        1 gggagtttgt tgacctcttg gctgttcata ttgtcatcag gtatgaaatt gagaactcag
       61 gagggattta ctgtgatgac agactctcac actaaggatt tggtacattt ggtaaactct
      121 taatctcctc aagatacagc aactgattcc agtaaaagat acaaataaat tagttttgtg
      181 aaaaaaatta gaagatgctg tttacaaaac catgatgcta tttctaaagc tgccagttca
      241 aacattatgt gtgatatgct gtgctattga aagggttaag cttttctgac tttcagatac
      301 aatgaaatta tgacaggaag aaaattgtgc cattttagca tgaaaatgct tgtacaaata
      361 ctgtcgttcc ttccttctta ctttctttat aatgcctcaa cgatagctaa gatgacagac
      421 atttgacagg tatctgtaag catacaaccc aggcagctca ttaaagtttt tctttctatg
      481 catcagcttt cacaaaggca aaaacccatt agcattgact attttgcaga ttagaagaat
      541 taagggcttc aaacgttggc ttataccaag caatgtcatt tgtgaagtga tgtttgcttt
      601 attatttccc tttctctccc tctgaaacca gactgacatg actttagctc aacgtagggc
      661 gtaatgtgca aaccaaagga ctggctcacc gatgaaaaga aacacattcc cttttataca
      721 tgactggaat ggcaaaaagg ggagacttta catgtactat ttaggctcat tagagtactg
      781 attatgatag ttctccggtg taatctttaa tcgactttga cactagattt gccccgttac
      841 aaatcctgtc atgcaaatta agtcatttgt gttgtttgat atggaaagat ctgctatgaa
      901 atgaaagatt agttcacaga tgaggcacca gagactgctg ccctt
//
LOCUS       KCLJ01000669             810 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 75531cal ultra-conserved element locus
            uce-7209, sequence.
ACCESSION   KCLJ01000669
VERSION     KCLJ01000669.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 810)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 810)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..810
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="75531cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>810
                     /note="ultra-conserved element locus uce-7209"
BASE COUNT          207 a          161 c          249 g          193 t
ORIGIN      
        1 tttcccctgt gtgactgcgc cggtgcacga taaggttact ctggaacttg aatgttttcc
       61 cacaaaattc acaggacttg ctcttggcct gaggctgggg aggcgtagtg ctgctggggg
      121 gcatgggggg cagtggtggg gtgctcaaaa aaggtgattt aggactcggc tggaaaggat
      181 tcaacagacg atgcataggg ttggtgcgac tgggtgagac tggcggaggg gtggaactgt
      241 ttcctgccag ctctcgaagc cttctggaga aatccatcgc tggggactca attgccatgg
      301 ggtttaaacg cataactctg tcaaaggcac tgggatgctg ggcaactaac cccatttctt
      361 cggcactaag gcgatgtgga tccagatgat gacgaggcgg tgggctgaac agcggaggcg
      421 tgtttgggag ccgaccctca ccaaagccag ggtgttcacg caggatgggt cctgtcatgc
      481 gcaaaaggtt gaaggggttg ttgtctccaa gaaaattcat cagcggggac tgtgcaacag
      541 tctccggtcc cagaggagga gggatggtga tgcgtggagt aagggaactg tttgaagggc
      601 ttgtttccag gtagatgcgg aatccatgtg tgttctgggc atgctgaagc aagaaccaag
      661 cgctattaaa aggctgcttg catgttgtgc aaatatagct tgaaggctca tctttaccta
      721 taaaagaaaa aacagaaaga acacttaaaa aataatacag cggagaacat ttaaatacag
      781 ttggcattca ctttattttg ttaacacact
//
LOCUS       KCLJ01000670             382 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 75643cal ultra-conserved element locus
            uce-4299, sequence.
ACCESSION   KCLJ01000670
VERSION     KCLJ01000670.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 382)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 382)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..382
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="75643cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>382
                     /note="ultra-conserved element locus uce-4299"
BASE COUNT          113 a           95 c           66 g          108 t
ORIGIN      
        1 aatcccaaac gcagacccac aaaaaattcc ctctgcccca gtcaacacgt ggcagactga
       61 attccaacgc ctccttccca cttgcggggt tgtgggtttt ttccttttcc agagcatctt
      121 gagcagataa tcagagcgtg ctgacattca gcagtaatca attagcgcct actttagatt
      181 aaattgagaa tatgtaaatt ggactcctca tcaggcacca cagtcaacat tgcagacact
      241 caccatgctc tgaacatatc aaacagatga aatgcagaag ttgttccaaa tccttttcta
      301 aaataggagg ccaggtgagc tatatcaacc atttaagact acttttggtt ttaacttctt
      361 agcttctgtt aaattagcct ct
//
LOCUS       KCLJ01000671             570 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 75749cal ultra-conserved element locus
            uce-6731, sequence.
ACCESSION   KCLJ01000671
VERSION     KCLJ01000671.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 570)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 570)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..570
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="75749cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>570
                     /note="ultra-conserved element locus uce-6731"
BASE COUNT          167 a          107 c           97 g          199 t
ORIGIN      
        1 ttttctgttt gtataatgtt gtgattaaat atggtggagc cctagggaat gaatttttta
       61 tttgaaggtt aagccaatat tagcaaaaaa taaaataaaa ttaatcaaat ggcccagagc
      121 atcacagcca cagttgattc caagaatgtt tggttacaaa atgagcaact gactaattgt
      181 gtaaatgctg ttaattagct gtgcagagcc cctaactggg ctattccctg taactaataa
      241 gaaatcaatt agctaatgaa gtggccatta aatgctatgc taatcttagc tgggatattt
      301 ttaatgtttc ttctgcttct tctttttttt ccttctttat gatccttcct aattgccatt
      361 gccatacgga gctcacagct ttcagcatgt ctaatgaaac atcattatat cataactggc
      421 attcttggaa gagttagtgg caaacctgct tcccaattat ttttaattgc cagacatact
      481 cataactggg ccttctacca agtagttcag atccctgcac tgtcacgtaa tatacccaaa
      541 gattgtgttt tcttttcttt gcatatgcag
//
LOCUS       KCLJ01000672             400 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 75855cal ultra-conserved element locus
            uce-674, sequence.
ACCESSION   KCLJ01000672
VERSION     KCLJ01000672.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 400)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 400)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..400
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="75855cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>400
                     /note="ultra-conserved element locus uce-674"
BASE COUNT          137 a           81 c           70 g          112 t
ORIGIN      
        1 gaaaaggtat aactttgtaa gaaagcacta tcataaattc aaaaaaagta tatcttaatg
       61 atacacttag agtaaatcat ttgccttgag agacaggagg tctctggtga cctgtatggc
      121 agccacaaga gactaccagg ctagctactt tcagctaaat gtactctcat attaatattt
      181 taaaatgcca taatgcctct ctgaaaacct cagaggacag atacatcaat ttgcgaggtc
      241 ttcactccag gaaatagaaa cagggataat ctgccattaa aagaaatagt tcattatgtc
      301 tgcttcttgg gagcacataa actatgtccc tcacatactt atgttgcaaa tcctcacttt
      361 aatgtgaagg gaaacaccat gccccagagc tttattgtcc
//
LOCUS       KCLJ01000673             912 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 75952cal ultra-conserved element locus
            uce-325, sequence.
ACCESSION   KCLJ01000673
VERSION     KCLJ01000673.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 912)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 912)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..912
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="75952cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>912
                     /note="ultra-conserved element locus uce-325"
BASE COUNT          274 a          194 c          157 g          287 t
ORIGIN      
        1 agcaataaaa agcaacactt gaaattcatt ttgcccactt gtttttgtct gagtcagaat
       61 ctaaatcaat agagatcaga ctgtagtttg tgagcaaatt tccttaacaa acaaaaataa
      121 agatacccat cctcctcata ctttatgcac agtaatgtaa gttattttcc actccattta
      181 gacttttcac cttcctttca tttaccctgt tttttacagt tcaataaata tttttccaag
      241 ctccacttgc caaacaaaag agtttagctt cagtgttact cctctgacaa atatccttat
      301 ggtgttgcac atgtgagcca ttgataaaca aattaaaatt ctgtcccagc tcagagctca
      361 gctggcccat ttcatcttgc ggtatgggtt tgtaaaggtc tgggtgtctg tcatcctccc
      421 ctaaccttgt ctttgtcaaa gggatacaaa agcctgcacg ctcggggcct tacgatactg
      481 attagtgtga gtgacaaagt ggagtagcaa gtccactcag cccttcataa taaatctatc
      541 aaagagtaat agaattccat caattctgca tcatccccga gggtcgctgt gctgggatgg
      601 aaagtgtgtt ccgctgggat tgtacaactg ttattattca attacactct tttcttccta
      661 gttaaagacc atgatatcat tatcacttaa tgaatacata taattggatc tggactctat
      721 gtttggctga tgaataccac tcactattca ttcagtctca gctcatcttc tgaccattta
      781 ttatagactt ttggctgaaa accatgatga caaagggaat ttgaaattag ctgagaattc
      841 attcaatgct cagttagaca caaaggcaaa atacaattct gacgcgtaaa tgaggctgag
      901 accacacaga ga
//
LOCUS       KCLJ01000674             475 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 76065cal ultra-conserved element locus
            uce-6863, sequence.
ACCESSION   KCLJ01000674
VERSION     KCLJ01000674.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 475)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 475)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..475
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="76065cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>475
                     /note="ultra-conserved element locus uce-6863"
BASE COUNT          170 a           93 c           96 g          116 t
ORIGIN      
        1 tttataaatt agtgctcata taatatttac aataaccagt aaatcaacag atggttccag
       61 aatacactga accaattaaa tccaaattct aaagactgca gccaagaata aaaacaacca
      121 agttggagaa acatatttaa agacagggaa agaaaacctg gcaagagtcc ctatacatgt
      181 ctgtgtgcag ttaacctctg ttgttaacac tgaaggaaat gccacccagt aaatggagga
      241 gagctataaa aataaaacaa catctgtata aattttgcta acacttgcct cctatgacct
      301 atgtattcag aaaatgccca gcgtcaaaaa agcagacgac tgccccgtgt tatttgggtc
      361 actgtgggca aaggtggagt aaacagcagt ggtatacttc cagggttctg ttagccaaat
      421 cctgcacagc tagagctctt gcagaggact ccatgggtga aaagtattac tgggg
//
LOCUS       KCLJ01000675             733 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 76171cal ultra-conserved element locus
            uce-1239, sequence.
ACCESSION   KCLJ01000675
VERSION     KCLJ01000675.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 733)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 733)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..733
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="76171cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>733
                     /note="ultra-conserved element locus uce-1239"
BASE COUNT          203 a          197 c          142 g          191 t
ORIGIN      
        1 ctcaccatcc ttcctgcccc tccctggagt gcagctcttt gggcaggcca gcctcagagg
       61 ttgggagaaa gggagacact gcccccaaat gccaccaaca acagcttctc cttcaaagct
      121 ttccaccccc tcctggactc gggaaggggt cgtggggatg gaggctggga gggtaggaca
      181 gcacctcttt cccattcacc aaggtttgat tccctttatg agcacgatcc gccaatccgt
      241 aatcaagggt taatttcaca gctcactgct tcatctagca taatatccat tcagactaat
      301 taaatctgtc taataatgtg agtgtctttg tctttgttct ttccattctt tgttttacac
      361 ccttcacatc tcatctccag aactacacgc catcacactc tgcttgacaa gcagaatcca
      421 tccctaaaat taaaacattc ctgacctatc tgcgatgaca aggcaagcaa gcttcacagc
      481 gctgcggccc atgaagggag ctgacacatt tgtttttaat ttcaaaagag tagaaagtga
      541 agatctgacc ctgtcaatca ggccctgtga caagtttaat cattgctgcc ccacaaaaat
      601 cacggctaaa taggaatgca aataatgtat cacagggctc ttataaatgc taatcaagga
      661 gaagtaatca actgacaatt tcactgatct cctttctgaa gaagtcagtc aacgcactgt
      721 ctctggacca caa
//
LOCUS       KCLJ01000676             598 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 76279cal ultra-conserved element locus
            uce-7320, sequence.
ACCESSION   KCLJ01000676
VERSION     KCLJ01000676.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 598)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 598)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..598
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="76279cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>598
                     /note="ultra-conserved element locus uce-7320"
BASE COUNT          194 a          122 c          107 g          175 t
ORIGIN      
        1 aaaacagatt gtgacacagg gcagtgattt tttttaacaa tcctattatg aaagacagag
       61 tgctcccatt tcctttgcag cttttatcaa gacttaaatt gctgccaagg gagaagggaa
      121 cctcactgct tttattttat ttttaattag ttactaaatt cctgccgaag tctcctccaa
      181 gcagagatcc aacagtatcc ctattaaatt atatagagcg agtccagtcc ttggctgtca
      241 gcgggaccca tcagtcctaa tttatcgccc caggaaacac agtacaatta tggtaataaa
      301 taataatagg attcagtaca tgacaacatg aatgatggag cctctcagaa ctcatttaca
      361 ttgctttgtg ttgcaatcac cctgcttcta atgtaatgcc aagcaaatga gcctttttga
      421 atattgtgca atctattgca agtcaactgg cacaaaactc actcaataaa tcatgttcaa
      481 acacatgcct ctaatgacag gtaaatcaac aatgaagtaa ttgcatttaa tgtattgaaa
      541 tactggacaa aaacagtgac ctcgaagtga ctttttggag aaggcttgcc gtggcaga
//
LOCUS       KCLJ01000677             675 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 76391cal ultra-conserved element locus
            uce-7074, sequence.
ACCESSION   KCLJ01000677
VERSION     KCLJ01000677.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 675)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 675)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..675
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="76391cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>675
                     /note="ultra-conserved element locus uce-7074"
BASE COUNT          233 a          112 c          114 g          216 t
ORIGIN      
        1 taattcaaag ggcaaatcag aaatcagtag aaatacatgt ctaaacctgg acaaagacaa
       61 ctggaaagga gactgagtac tacaggaata ataaaaacac cactgcataa aaaatcagct
      121 gcatggcttc atttaaaagt gttctggaaa aaatttgcta tcaattatgc ctctcctcta
      181 catacaagct tcataaatga agaatagggt tttaagagac gttttctctt tcttttgtca
      241 ggtctggagt cattaaacag agattagctg gataaataga ggaagtgatt tttaaactgt
      301 ttgcaaactt aatgtgaaga gcccagcctt gcaaattatc acatctaatc agagatgcac
      361 gcttcactgc tccagtaatt gtactagtat tagtcaaatt cttgttgtct cctcattagc
      421 catgaaaagg agactcaaga tgtacttcat tagagtatcc tgaatataaa tttttagtgt
      481 aaggaggaag agatgtgtta catactgtac tttataaaga aatatattaa gaatataaac
      541 catgttgaat cattctggtt tttgactgaa tctttaacaa ccaaaccttt tctcttttca
      601 tttttactgt gttgatcctt cttttatctg cagtgagact atagcacttg aaaatgtaat
      661 ttacaaccaa tgtca
//
LOCUS       KCLJ01000678             612 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 76499cal ultra-conserved element locus
            uce-7685, sequence.
ACCESSION   KCLJ01000678
VERSION     KCLJ01000678.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 612)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 612)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..612
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="76499cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>612
                     /note="ultra-conserved element locus uce-7685"
BASE COUNT          217 a          110 c          113 g          172 t
ORIGIN      
        1 gcttacatta catatgataa acacagtatc atggaagaaa tgtattaaaa tggatttcaa
       61 aagacagatg aaatgtaaac ctgatctcct tcctttcacc attaaataac gttatagaaa
      121 gttaaataat gcacaaaaca tacagcgatc agccaaatgc tgtctaaccc tatcaaacac
      181 aggtcaatgc catcatagca gccgtctgaa atttcctcca ctggagctgc cgaatgcttt
      241 ggaggtacag aaagcctaga attgagacag aattacacta gcattgtgta aataatcaaa
      301 ctgtgacctg tggggttaaa acctataatt ggagtgatac ttcaaagaga tgactacttt
      361 ttcagtgcta ttttgttcag ccagatagga agatggcttg ttgggatttt attggccagc
      421 aacgctactg caaaactgat attttcaaca gctgctggtg catttgtgct ctgaaaaatt
      481 agaggctaaa ttgaagcatt aaagaacatc aaaggaccaa tttaatgcaa aaaacaagta
      541 ctccaactgg atctatttta ctgcaaatta ataatgcaga tttatacaaa atgtgatgca
      601 ctgagtgctt tg
//
LOCUS       KCLJ01000679             596 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 76608cal ultra-conserved element locus
            uce-1529, sequence.
ACCESSION   KCLJ01000679
VERSION     KCLJ01000679.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 596)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 596)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..596
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="76608cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>596
                     /note="ultra-conserved element locus uce-1529"
BASE COUNT          209 a           83 c          121 g          183 t
ORIGIN      
        1 tatgcaagat ataaaatcaa aatattttta aagttacttc aactggtttg ggaaagaaag
       61 aggtggctta aaaatacatg ttctgtttca tttggggtgc aataaaaacc agcatgtaaa
      121 agttgtaagc ccagaaataa ataaaataaa agcatcagtc atttctatca ctggggaact
      181 tttttcatct aagcacatat gaacaattga tccttgtagt catatatagc agtaaacatt
      241 aataacttaa cagtctgaag tcagtgctga agatatggag cattattgaa agatggagtc
      301 gagcaggtgg cactttaata tgttcagtgt catggttgac tctaaagact agtagaatga
      361 aattacttga ggttctaaag atttaaaaag cgaactcatt ttgctgcact aaggaaatgc
      421 tactgatcag gctttctgtg tccctttttt ctaggctaga aaatattaac cctgaagaaa
      481 atgacatggt aagccattct ctgaggagat ttcttgatgt cagtcttata tcttagaggc
      541 ttaagttcaa ttgagtgggt ttcaagaact aagatgtggg aaaaagaaga attgac
//
LOCUS       KCLJ01000680             808 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 76718cal ultra-conserved element locus
            uce-4301, sequence.
ACCESSION   KCLJ01000680
VERSION     KCLJ01000680.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 808)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 808)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..808
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="76718cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>808
                     /note="ultra-conserved element locus uce-4301"
BASE COUNT          234 a          136 c          164 g          274 t
ORIGIN      
        1 atctcatgct agtcaaatgc tttaagctgt ctttgaataa accaattaat agtacctatc
       61 aatttcttat ttatatttat gtattgtaat atagatgtaa ttttattgga atttgaaaag
      121 cttggatgtt tttcacagtc ttcagggcaa acaatgaaat taaattgtat agtgatctta
      181 atctattatt aaaaggtcct ggaaaggaag attacaaggt agattcaggt tttgaatcag
      241 ttttgccatt ggtttagcag cgggtgggca ggcagatgcc tgctcagagt agaacctatt
      301 gccatttttc accattgata gagtagcctt tcagagtcaa tgagctctgt caatgtgagc
      361 ttgtcaaggc tacaacttca tagacctgag aggcggtttg agaggtcagc ccttttcagg
      421 tttgctgtga tgcaaatgaa ctttaatgct taaacaacta ttggaatttt tatgtctgct
      481 ccttgttctt ttttcttcac aaagtcattg acgagacatt cagtgctttt taaattggaa
      541 gttgcattgt gctaaagacc tagtacagat ttacggaggg ctgaaagcag ttagatcatg
      601 ttcttttcat ggtgcgatta gaatcaaatc gatttcccta cagccttcag cattcagatg
      661 gcaattttaa caaagcttgg gggctagaca agggacaaaa cgactgaact gaatgttaat
      721 tacactctgc agccttattt tcttttgatt tggagctgac tggcaactaa attaacaaaa
      781 gtgtgaccat aactgctgcc ctattttc
//
LOCUS       KCLJ01000681             551 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 76830cal ultra-conserved element locus
            uce-2587, sequence.
ACCESSION   KCLJ01000681
VERSION     KCLJ01000681.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 551)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 551)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..551
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="76830cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>551
                     /note="ultra-conserved element locus uce-2587"
BASE COUNT          192 a          109 c          114 g          136 t
ORIGIN      
        1 atttttcttt gaacttcaat tacaaaggga gacgcccctc tctttttgca ttcattcagc
       61 atttgattga agagttaatt cagctccact gaacaatgat agatgtaatg aacagaaagg
      121 tcttccaatg tgagagatat tcttctcaat tctttctgac aggcaaggga tggtaaatag
      181 acaaaacaga gtcaagctag gcagcaaact tgtaaaaaga atgactctgg taatgtacaa
      241 ggacagcatg cacatcaatg aatacttaca taaatgtctg caccataaaa tccatcctgg
      301 tatacaacac tgcaaggatg cacacacaaa gaaaaacatc catattagtg catttccaca
      361 tgcaaatgcc accaacccct gcacagctga ggttagtctc tcacaagaac agaggggagg
      421 gggaaggaag gcactcttca cattggttaa ggaggttggc agtaattatc agaagtgaac
      481 ctggaaatac atcatcttat caagtatgcc aaatgcttag tcaaaggtaa agcacggcaa
      541 aagtttgggg g
//
LOCUS       KCLJ01000682             662 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 76937cal ultra-conserved element locus
            uce-6625, sequence.
ACCESSION   KCLJ01000682
VERSION     KCLJ01000682.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 662)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 662)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..662
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="76937cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>662
                     /note="ultra-conserved element locus uce-6625"
BASE COUNT          176 a          119 c          137 g          230 t
ORIGIN      
        1 ttggagccct gaggctgttg actcagctcc tgatatattg tactgttagt gtttcagctc
       61 tctcgcaggg gattgctggt cctactttga ggtcaggagt taactacttg tattttagca
      121 gtgtactgat atcaatacgg ctcctatgga aaccttactt gacgtcattt tcggatcttt
      181 gctactgtag ctaagcttta gtaaaagtca ataagaacat tagattgttg tctgtattat
      241 tacttgccac ttcctgccag caatctacca attcattagc ggagagtttt ggaaatctca
      301 cttgattatt tatgcagtca atagcaaggc ttgtctgcat tcataattgt ttgattttat
      361 ggcctcttct ttaaacaaac attgtctatg gtaatgcgat gccctgatgg atgggaaagg
      421 ttttgtctgt gaatatcatt tagataatta aaaatgacag atgaaatcgc ctgctgtctt
      481 gacctgtact ttgttccctc agtgatgctg aggagatgct gattgctgtc aatcaaaacc
      541 cattggaggt ttgtaaattc tggctgctgt gaactctgac ctcgagtgtt gatctgaaat
      601 agataataac cttgaaattc tattagaatt taaaaactgt tcaccaaagg ggcataatat
      661 at
//
LOCUS       KCLJ01000683             351 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 77049cal ultra-conserved element locus
            uce-6107, sequence.
ACCESSION   KCLJ01000683
VERSION     KCLJ01000683.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 351)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 351)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..351
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="77049cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>351
                     /note="ultra-conserved element locus uce-6107"
BASE COUNT           97 a           75 c           61 g          118 t
ORIGIN      
        1 agcagaaatg agaatttcca tgacacggtg ctcttagcat ttataaatgc tcactcctgc
       61 aagttaaaaa tcctgggctg taattcccac tctgccaggc acttttcaat catttctctc
      121 tgctaatttt ggtgtcaccc tcatttcttc attttgagca aatttgtaaa tggccctgat
      181 gtgttctaca atttagtcaa ttactgtttc agcctgcaaa cctcctggga aacggaacat
      241 acatggcctc aaggtacgaa tttcaataat tgtttcagga aagttagatg gatttgtaat
      301 gctgtgttcc acttattgaa atgtcaaata aaactgcact ttcttgagct c
//
LOCUS       KCLJ01000684             455 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 77152cal ultra-conserved element locus
            uce-2409, sequence.
ACCESSION   KCLJ01000684
VERSION     KCLJ01000684.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 455)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 455)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..455
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="77152cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>455
                     /note="ultra-conserved element locus uce-2409"
BASE COUNT          118 a          112 c           86 g          139 t
ORIGIN      
        1 ggtacacgga tggcacctct cactgctcgg ggctctgctt tcattaagaa cattttctgc
       61 ctgttctcca agggcaccct ctgtcagaga ctgccacgca attatggctt tgaagtccag
      121 tgaatggaaa caaaatgaat tagcgttcag gtgttcctgc aacctgatta caaaggccca
      181 attcagtggc gtccttcaca ccttttcact tgtccctgca taatctctac acaccccctc
      241 ctccctgtta tccctttatt tcctaatgct tgcaggtcct ccaggaagac acaagcactt
      301 acagttgttg agtgattaaa tatttataat cagggcaatg agtgaggtgt tgaataataa
      361 atgctaaggt tgaggcggcc ttagataatt tctgcagatt tcttcatcca ctgcctcttt
      421 gattctaagg caaaattctt ttaattaaca ataac
//
LOCUS       KCLJ01000685             483 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 77261cal ultra-conserved element locus
            uce-3627, sequence.
ACCESSION   KCLJ01000685
VERSION     KCLJ01000685.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 483)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 483)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..483
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="77261cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>483
                     /note="ultra-conserved element locus uce-3627"
BASE COUNT          117 a          118 c          115 g          133 t
ORIGIN      
        1 gaggcaggaa gtactgttgg aaaagtcacc ctgcatgccc tgtgccaaaa gtgcctctct
       61 tactctgcag aacatcccct cggctgtggg gtgcgcaggt ggtttcatgc agggaagggg
      121 ctctgacgcc agcacacctt gtgctggtat aaaactatct gagccaaagt tcaggtgaag
      181 ggcagccatg tagctggaaa gtcatgtggc tctcatgttg gttagtatgt cactttgaac
      241 agctcttatc tgatattatt atgactaacc cagtgctgac agcatggaac agattacagg
      301 agccatgtga tgattattta aggcatcgct gagtataaca catggctcat attaacccct
      361 tctttccaca gcagctctct caccctgtga gctgggagcg ctcccttacc acacttgctc
      421 tatttcagac aaggctattt ttgaatcatt cctctatatc aatgtggcct tgcagttcag
      481 agc
//
LOCUS       KCLJ01000686             642 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 77371cal ultra-conserved element locus
            uce-7722, sequence.
ACCESSION   KCLJ01000686
VERSION     KCLJ01000686.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 642)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 642)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..642
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="77371cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>642
                     /note="ultra-conserved element locus uce-7722"
BASE COUNT          176 a          118 c          178 g          170 t
ORIGIN      
        1 cttagtatcc agctcccttc ccctctaccc tacactggtt aataatgaaa gtctatttta
       61 agagactgga gttcggtaat agatatctag gaaaatgtgg acagcagtgt ttaacctaag
      121 cccagttcct gggcaatggc tctgcaaaag gcattgctca gagttaggaa gtcgctgttc
      181 agggcaggga ggacaggggg atgggaccaa caggtcctca gatggggaga gctctgaatc
      241 ataaacacac catagcttta ataaaataaa tgaagtggag ccttttcaga tgagggcaga
      301 ctgtattggg gcaagccagg cttttaacgt tgggagtgaa aattgacagg ctgagaactg
      361 ggacataaac aaaaatgtca ggccctggga gtcttgttca ctggacaatg tctcaattgt
      421 ttcagtgatt tttcgcaggc agcaggggat agtgggagat ttaactcttt actggccgtg
      481 taggagctgg aggtgctcgc agagtgaaga agtggcagag aagagcagtt tggaaatgat
      541 taagcaggga aggtcacact gttctctgca tacttgtctg ctgttgaagt tgggctttac
      601 acttccttag ttttgctccc tgctgggttt ttatcagaaa aa
//
LOCUS       KCLJ01000687             663 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 77478cal ultra-conserved element locus
            uce-2298, sequence.
ACCESSION   KCLJ01000687
VERSION     KCLJ01000687.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 663)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 663)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..663
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="77478cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>663
                     /note="ultra-conserved element locus uce-2298"
BASE COUNT          222 a          111 c          116 g          214 t
ORIGIN      
        1 gattagattc agcataaaca aatgtctgaa gggaccaata gaaaccaaat ttacacccac
       61 aaacattgta tggatctgat tgagctttaa aaaaataatg aagagctgca tgttaaattt
      121 tctacgatgt catgagttat aatactgaat ccagtgtcat taaattgtat ttgtttcttg
      181 tcagctacaa caatttcagc aaagcacaat ccgtgtgaaa gtatgaataa aattcagaga
      241 gtagcatcaa ggacttctga gctcaggaaa ctgagtttgg cagtgctaat ttgtattaaa
      301 gttgttgttg catgacagca ggaaaaagat ttaatgcttg ccacctgaat caagccatgg
      361 aacattggtt tctataactg ccatgaattt gaatcaaggc caatatctct aaatttgaaa
      421 taaactgata ctctgtcttg aaagaagata caggccactt atgttgcaga aggtatttag
      481 aaaatgtatt tcaatttaat tttcagcagt atatatcttt caaattttta ggcgcttaag
      541 cactggattt ttctgtattc cagcaagtat gtagccttcc agccatttat ttgtcaatat
      601 ccattcttaa accacaagac cagagatgct ggttttactt attatgcagc tgcttacctt
      661 aat
//
LOCUS       KCLJ01000688             908 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 77590cal ultra-conserved element locus
            uce-1260, sequence.
ACCESSION   KCLJ01000688
VERSION     KCLJ01000688.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 908)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 908)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..908
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="77590cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>908
                     /note="ultra-conserved element locus uce-1260"
BASE COUNT          172 a          265 c          200 g          271 t
ORIGIN      
        1 gttgagagct caccccatcc agacttgttt tgattgcttt ggctgggtac atcgccccag
       61 ccccctgagt tctttgtctg tgtggcagag ctctcccacc cctcagttcc tttatcagac
      121 ttcccctcgg gtcgtggcat ctcttcaata tcccacacgg tatcttgctt aatttgagtc
      181 tggccccagc cggtgttgga aagcactcgg gggtccaagt cagtcctgct cagcaacgtc
      241 tgcaggactg cctggcaatc aggatgcgtg ggcctgtatg atcggcgtcc agaattgtga
      301 ctgtcactac ttcctgcttt gtggttgctt ccagtgcttt gacctccaac ctcacttcct
      361 gcagagctgg aagatcttcc ccaacaggga gcctgggaat tgccttggtt ttcaggaaga
      421 gggtggcctt tttgattgtc ccatgctcca gtgctagaat ttggttggtt tggaccactc
      481 cactctccaa tcttcagttc atcagaccca gacagctgtt tccattctcc ctgagagacc
      541 ccagatgtta atttgttccc ttcaccccat ttgctttcgt ttgcatgttg agggccaaag
      601 ttccaagacc caccacccgt agaccggtta ttgttatccc aagaatcact tcttgaccca
      661 ttaggttttt gaacagaagc tcctttccag gagtcctctc tatcctttcc attgttccca
      721 tggtttccag aattgctctg cccagagact gtttcagttc cagaagaccc cctagctgta
      781 ccccaagatc caacactccc agtctttctt tctccagtgc tttgagaagg ggtgtcagtg
      841 ctcctggaag ggttccccaa gcccatttca aagggcattc ccttattctc catagggttt
      901 ggtgaact
//
LOCUS       KCLJ01000689             449 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 77703cal ultra-conserved element locus
            uce-6779, sequence.
ACCESSION   KCLJ01000689
VERSION     KCLJ01000689.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 449)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 449)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..449
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="77703cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>449
                     /note="ultra-conserved element locus uce-6779"
BASE COUNT          124 a           89 c          100 g          136 t
ORIGIN      
        1 cagctttctg ttttgtgctt tcttagccgg tggcttgaaa gctagatacc ccagccatca
       61 attgccgaga cattttgtct tttgtgacat tgaggaaaag acaaggaagg aactaaaaaa
      121 tgtcaaaaga tcaaaatcaa tgggctgaag gaatgtgatc tgtttatcgg ggtgtagctg
      181 ctctttctgt ttgcattaag tccgagtgag tgtctttggt caccactaaa cttgctttta
      241 ttcactccct aggagatgta atacaagcat gaaacggtgg ctcacaaagc aggcacagcg
      301 gcaaataaat aaaagggctt ctttaaagac cacaaaccca ggtttattgc cttctcgtat
      361 taaacacgct tacctttctc ttgaaacttg ttgctgagca cagcaaatgg accatgttgt
      421 gttgacacgg gtgtcttgtt tctgtgtta
//
LOCUS       KCLJ01000690             567 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 77809cal ultra-conserved element locus
            uce-2909, sequence.
ACCESSION   KCLJ01000690
VERSION     KCLJ01000690.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 567)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 567)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..567
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="77809cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>567
                     /note="ultra-conserved element locus uce-2909"
BASE COUNT          194 a          128 c           83 g          162 t
ORIGIN      
        1 tattacatta tctcacaaaa ctaaaatgtc atagtcaaaa aggcaactca cagtacagat
       61 caattgctca gcatgcaaat aatagcatac cttatctggc caccactgca agtcttctcc
      121 taaagaaaca ggactttgaa caggtgtatt cttcttgtcc aggtttggtt ccccttcctt
      181 acttgttgag cctctttcat tatcaaatga ggctccatca agccaccttc gctcacgcaa
      241 acgtaaaacg gactcacgtt cacgcaacag ctcagagtct ctctctaagg gaagaaggag
      301 aactggtatg caattgggtc acaccagtgg gataaaagta agccactctc tagtaaagac
      361 ccttcaggat gcaactaaca gcagttaatc tactcacaca gattaaaaat atagtcctga
      421 catgcaacat tcaacatact aactctttca aaaatatgta ttttagaatc actaaacata
      481 aaataagcta gaaatagttt tttgcactat tttcacttac atcataagag gccaaatatt
      541 taacatttct atttaatttt atcaatg
//
LOCUS       KCLJ01000691             566 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 77915cal ultra-conserved element locus
            uce-3911, sequence.
ACCESSION   KCLJ01000691
VERSION     KCLJ01000691.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 566)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 566)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..566
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="77915cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>566
                     /note="ultra-conserved element locus uce-3911"
BASE COUNT          202 a           95 c           96 g          173 t
ORIGIN      
        1 agtgaaagtg gcatataggg ggttaatgga atgatgaggc aaaaaactgc actgccagca
       61 gaattcccca aagggtaaac aaaactctta actgttgcaa acaataaatt gtcaatacct
      121 tgtagaaaca gtggataatg aaaagttata atgcctatag ttagtaccct ctttaaaaga
      181 atttacacag gatatgaaat taaattctgt gcacagttct cttaatttgc ccttaattaa
      241 acaatactcc ataaatggtg cattcagtga ccaaatgttc agagacagca aaatggtggg
      301 tcccaagcca ttaggaatga aataaagtca gtcccctgag agcctgctag aatctggtct
      361 atctaagtga caactgatgg tttaggaaag ataattaact ttgcaattac aaaccgcagc
      421 tttcaccaat gctgtttctt tcagtattct cttctaaatg ttctactaaa agataaaatt
      481 ttttaaaaat gttgagttca taggggccca tttttcctac acaaatataa tttgaatatt
      541 ttattttaaa tatttcagat cattaa
//
LOCUS       KCLJ01000692             870 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 78131cal ultra-conserved element locus
            uce-3096, sequence.
ACCESSION   KCLJ01000692
VERSION     KCLJ01000692.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 870)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 870)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..870
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="78131cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>870
                     /note="ultra-conserved element locus uce-3096"
BASE COUNT          232 a          165 c          167 g          306 t
ORIGIN      
        1 accagtcctg gtcaaactcg gatgaagcaa atggaattat ttaaacctac aggacctcca
       61 gttcttaaaa atctggaagc agttcatctt ttgtcatgct gctgtgaaaa ccttcccagg
      121 acacagttac ttttcagaat gcttcatgtt tattttgttt aactgtacgt actctccagg
      181 tgctacgttt aactcctctt tttcttcttt agatctctgc agcgattata tttggaaaaa
      241 ctgtatatct gaacacttaa atgtgtgtga gtgcaagcag ttttacgttc agattttctc
      301 ttcctgttta gataacaaat ctcactttcc ttgtgtgctt gcactatagg tttgggactg
      361 acaatagctg actaacatgt cctgagctgt gagagggcat agcaagaagg ccttcatgcg
      421 gtaatgaccc ttttcagaga caatggtcat catggattat gcgtttccaa ttatttgttc
      481 atttatttat ttttttacat atttctaaat tagaaacctc actgcttcat ggcagttggt
      541 ttgctattgc ttccaattct gttaggatgc cattttgtac tagaggtctt tctatgatca
      601 tttttagata ggcaatgatg tagttcataa atgatttagg ccacagggtt gggtatgatg
      661 gtacacagtt gtatatccac aaaatggagt attaaatgta gtttcagagg acttctcaac
      721 tttgtggcat taaaatacaa tgcaagatca taccatataa ccagactgtg taaggggatt
      781 ttgtgttaac atcggcagtc ccttaccatc cagatggctg caggattagt atgtgcctgc
      841 atgcatatat attagtccca ttccctatct
//
LOCUS       KCLJ01000693             397 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 78243cal ultra-conserved element locus
            uce-2777, sequence.
ACCESSION   KCLJ01000693
VERSION     KCLJ01000693.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 397)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 397)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..397
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="78243cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>397
                     /note="ultra-conserved element locus uce-2777"
BASE COUNT          135 a           72 c           77 g          113 t
ORIGIN      
        1 ccttcccttt atcttcatga actgtgtcct agtgggctga aaatttcagc cacttctcac
       61 atttctagat gaaccctttc ttcaatcaaa gatgatgaag agaaatgaaa ttatgaaagg
      121 cagaaaacat agagcccaaa gtgtgaccta ggaatcttaa ttttcctcaa tcattgctgt
      181 aacggaatgc aagtctgcag cagcgggggt gaaattatag tacaaattac catgctatgc
      241 cagataaatt attctctgca gcatggttat taagtgatag ataaataact aacactgcag
      301 gactgattga caaaatataa gtgacctgga gctaagcagg gcactgtgga aataacattg
      361 cagtgccact aatattttaa tactgaaatg agatttt
//
LOCUS       KCLJ01000694             577 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 78347cal ultra-conserved element locus
            uce-2034, sequence.
ACCESSION   KCLJ01000694
VERSION     KCLJ01000694.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 577)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 577)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..577
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="78347cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>577
                     /note="ultra-conserved element locus uce-2034"
BASE COUNT          198 a           94 c           99 g          186 t
ORIGIN      
        1 taattaataa ggtataatat gcaaagcaca gtaatttcaa acagcttgta atgtctctaa
       61 tgtactttca attttttatt ttacataagg gctatattca ttatgtggtt atgataaaca
      121 tactaatgaa ttttattaca ggaacaaatt taaacatgta aatgagatca aatagtatta
      181 aaatgcaaac gatggggaaa cttattacaa actaaccttg ccaacataca tggagggatg
      241 ttacaaaagg actcgggaag ttgcacactt gatacaaagt cagtgcagtc ctttcacaaa
      301 gtcactgaaa acaagaattt gtgaactctc cataaactct gtcgaacaaa aaaagttaac
      361 tcgaatcctg ggcttgcgtg taactttggg tgacaattaa aatccctttt cttgttccag
      421 tgaacagtaa tctgtgcata attacattca aatgagatat tagcattttt tgtgcttact
      481 ctttgttaat tgcagagttc actcaccatg gtgatgcttt tgatagaatc aagcaacctt
      541 attgacctga tgctgcaagg catgtttgga aattctg
//
LOCUS       KCLJ01000695             458 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 78445cal ultra-conserved element locus
            uce-7648, sequence.
ACCESSION   KCLJ01000695
VERSION     KCLJ01000695.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 458)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 458)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..458
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="78445cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>458
                     /note="ultra-conserved element locus uce-7648"
BASE COUNT          149 a           82 c           79 g          148 t
ORIGIN      
        1 aataataata ataaatgtta atcaaaaaac tgcatgtgtc tttctgattg tgccagtgtt
       61 gtggtattca attatgcaat tttcattggc atattaatca tcttttcaac aaacaagcca
      121 gcgttaatta aagcaaacca tggataaaga catgttgccg gatcatcatt ccgtttatca
      181 cagcgcacag gctggccgtt aagtaaattc tggactgtga gatgaatttc aatgttggct
      241 tcatcttttt tgttggagtt tgaatgcaac tcatctacaa caacaacaaa cttcaggctt
      301 cacaagagaa agatgaattt atttgtaatt aatggcaaaa gaagaaagat aaagtagttg
      361 tatgctttta atgggaatta gagtatttca aactaaataa tttttgttct gtcttcctcc
      421 gctccccttc ttaccctact cagagcccca agagcaag
//
LOCUS       KCLJ01000696             676 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 78547cal ultra-conserved element locus
            uce-5820, sequence.
ACCESSION   KCLJ01000696
VERSION     KCLJ01000696.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 676)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 676)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..676
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="78547cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>676
                     /note="ultra-conserved element locus uce-5820"
BASE COUNT          203 a          127 c          136 g          210 t
ORIGIN      
        1 ttatggcttc ttgtttacaa tctgagccat aatgaattcc accctgccta ttgtagagta
       61 ctgtaagagc agccactgta aaacaagctg tcggcatcca gaatgcagtt tctcacccag
      121 aaacaatgta ataagaaaaa taattagatt ctgtgattaa cagaacacag caaaattata
      181 taaggtggtt ttgattgcag atgttagcac tttataaatt tgcattggaa tcttatttca
      241 gccactacga ctgactttca agcaacagta agcaggctat agttaaccac tgaagcagaa
      301 atttagagtc aatgagtaat tattaagagc tttccagaat attagctgtt tcagttgctg
      361 cagtgatgga atagtccatt agatatttct gtttctggca actcctgaga attgattctg
      421 atacgaaaca aggagccatt ttgatcaata ctgtaattac tcttattgat ggattgtttt
      481 acaatgatag tcatcattgc catgtgtctg ctcgggaggc accggcgctg tccgccgtgc
      541 gccgtaatgc gccacaaata tcggattcaa atcaacacac tattgagact gggctgacaa
      601 gcgtgaaatt aattgttcca cttcatgtaa gacctgcatt cttcttttga gagagtaatt
      661 tgttgctgtg tgtagc
//
LOCUS       KCLJ01000697             625 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 78653cal ultra-conserved element locus
            uce-7248, sequence.
ACCESSION   KCLJ01000697
VERSION     KCLJ01000697.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 625)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 625)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..625
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="78653cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>625
                     /note="ultra-conserved element locus uce-7248"
BASE COUNT          208 a          109 c          117 g          191 t
ORIGIN      
        1 accaaagctg ctcgtgataa attccaatct ttaccttctg acttttgcag agcaggttgt
       61 atttaccccc aaatggaaga caatttatcc ttaaaatgga tgaaggtttt ccagggatat
      121 tataggttag caagcatcga ctttttttct taatggaata aagatcacag cttctacaga
      181 aaataatgat ggaatttagt caggatgtca ggaatgaaga ccacatggtt tttgtgcgtt
      241 taacctttct cttgtggctg atgaaggcca atgtagtatt ttattatcaa cattggcagg
      301 tgatttatta ccactgtttc tactccagta aaaccacatt aagctgttct tgatgttcat
      361 ttgttatctt caaactccct atacacttac tgcatgcata attccttctt ctaagacact
      421 tcaacagaaa atggtaaata tttaagtcat gattccaaat ttatcaaaag ctcaggaact
      481 gaaatacagt agttgcaaga ctagatgcca acataaagcg agtgatgtaa tgcatctgaa
      541 acagcagcca tgcataataa tgtgtgaagg tagattcagg agtaacagaa agtaaatcat
      601 gaggagactt cagaggagaa cagaa
//
LOCUS       KCLJ01000698             706 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 78761cal ultra-conserved element locus
            uce-7975, sequence.
ACCESSION   KCLJ01000698
VERSION     KCLJ01000698.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 706)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 706)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..706
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="78761cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>706
                     /note="ultra-conserved element locus uce-7975"
BASE COUNT          180 a          164 c          177 g          185 t
ORIGIN      
        1 gacgtacagg tggcggctgt cacacctaac gggatcatct tttgtttctc ctcccacatt
       61 ttattttggt gcagtgcaca tgaacgcagt gtctaggaca gatgtgctac ctatagaagt
      121 ctttagctgt gaacccttaa tttgcagctg gaactctaat aaacagtgca tagtgtttca
      181 atagccttct gcttatatgt ttgaagattc gaaactgaat ggtgaggtgg ccaaggcggc
      241 gctggcaaac gaagactgtc cccacataga ccaggctatt acgcctgatg agggcctgcc
      301 ctttacccgc tctggcactc gggagagata tggaccctgc ttcctcttat caaccgggga
      361 atatccctgc ccgcctgatg gaggaataag aaagggtatg tggggccctg taccacgtag
      421 ctagcaactg gtttaaataa ctaagagaaa gtcagcttag ctgtagcacg cgatagtgcg
      481 cttgctgtag agatgcacgt ttgggctgga aaccaccacc tgatgtctgc atttggagtt
      541 tctaacctat ttctttcaga aagaaaagcc tgaggagctg tgctaggcag tcccacccca
      601 gctggtgcag gaagctttag tggaggatgc tctactatgt ccttaaatta gcccatccca
      661 taaggagaga ccaattaatg tatcatagca atgaaggttt gccact
//
LOCUS       KCLJ01000699             518 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 78873cal ultra-conserved element locus
            uce-3421, sequence.
ACCESSION   KCLJ01000699
VERSION     KCLJ01000699.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 518)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 518)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..518
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="78873cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>518
                     /note="ultra-conserved element locus uce-3421"
BASE COUNT          119 a          134 c          110 g          155 t
ORIGIN      
        1 cctgctcagc tcccagcctg cctgctcagc tccacacaca catggccttt cccaacaagc
       61 agcagtcacc gctattccag ggattgtaat gaattggccg cttttctcca atgcacttat
      121 ttgcctcctg cagcctccct ctgccggtct cctccctccc cgctcccatc ctggctgctc
      181 ccaggcagag ggagagagga attatttatt gtgtgcctgt tgaaaatgaa aggcttttac
      241 attttaatga gcgctaaata ggagcgagga aatattgttc attagctgta atctgtggaa
      301 ttgcttgagt gaacttcctt tggaggccgc tttaaacggt tcactcaagt aaagcagttt
      361 gtatggtaat taagggagca tttttctgtc aacatctgtg ctgctattta taacgccgaa
      421 ggtatcttat tgctccacca gagaaacatt aaaagaggtg ggcagagggg aagctgtatt
      481 ttttttctct cttcaaaacc cctccctcct ccttgttt
//
LOCUS       KCLJ01000700             411 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 78977cal ultra-conserved element locus
            uce-1759, sequence.
ACCESSION   KCLJ01000700
VERSION     KCLJ01000700.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 411)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 411)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..411
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="78977cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>411
                     /note="ultra-conserved element locus uce-1759"
BASE COUNT          163 a           58 c           69 g          121 t
ORIGIN      
        1 aagggtaaag ataaaaacaa ttccaagctg agagaaatgc aaataggtgg aaagcagtga
       61 cattaatagg aataagatta ttaattgctg ggcatatttc agcagaaatt tctgaaatgt
      121 atcaggttac acaatgaaac aggctggaaa agcataaaat gacaataatt gaaatgttct
      181 ctttgaaacc ttccattaaa aaggatcaca gcttattgct tttaatatct gtcagaaaga
      241 cattaaaggt gttttatgac atctatgcca acatttatat tatctccatg ataatgatct
      301 ctacacaaaa tgtataatac atttacaaaa attacattat acaaattaaa tgaaaccacc
      361 ttttactgat tgctaaatgt ctccaagggg tttgggaaag acgtgattag a
//
LOCUS       KCLJ01000701             706 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 79079cal ultra-conserved element locus
            uce-7588, sequence.
ACCESSION   KCLJ01000701
VERSION     KCLJ01000701.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 706)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 706)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..706
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="79079cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>706
                     /note="ultra-conserved element locus uce-7588"
BASE COUNT          210 a          112 c          162 g          222 t
ORIGIN      
        1 attcttttca gtttgagaga gtatgtatat ttaacaaagt agtagcaagc agcagaaagc
       61 tgagtcagag aatcttttat ggtaataatt tcaaagtgac aagtgagaaa atggaaattg
      121 tgggatggaa ttgctaacag tgaaagtgtt gatcagtaag gcaggaattt accaacttag
      181 ggagacagaa tgtcatgttg gaagtcaaca tattcacatt acagtcttta atgttgaaaa
      241 tacagaattg agaagtgttt cttaatgact gaagctcttt atgtggtact aatctcttac
      301 tgtttgctag gtttcggtgg ttgcatgaag gatgttaaat ttacacgagg tgctgtcgtt
      361 aacttggcat ctgtgtccag cagtgctgtc agagtcaatc tggacggatg cctatcaact
      421 gacagtgctg ttaactgcag gggaagtgac tccatccttg tgtaccgagg aaaagagcag
      481 agtgtttatg agagtgctct acaaccattt acaggtagtg cattggttcc ttgcataatt
      541 ttcattccat tctttaatct tttacctcct ctcctgtgaa gaatacctct atagggtggt
      601 tgccttaaat gaaggaggat cagtatctag tgcatggacc cacgctcgaa caagagaatc
      661 aggtaaataa aatttcaagg tttactcgtt cttatttttc ataaga
//
LOCUS       KCLJ01000702             579 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 79183cal ultra-conserved element locus
            uce-1695, sequence.
ACCESSION   KCLJ01000702
VERSION     KCLJ01000702.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 579)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 579)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..579
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="79183cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>579
                     /note="ultra-conserved element locus uce-1695"
BASE COUNT          187 a          112 c          112 g          168 t
ORIGIN      
        1 tttgactgtt gcaaaataat ccccactctg cttctttcta tgaactgtaa tacaaggtcc
       61 aatagacagc ctcagatgca tctcaggtcc agtacatgct tttcaaactt aatcaaggga
      121 atatagaaat gtatataaaa agatgaaagt gtctttgcct ttatatgtac tgaaaaaaag
      181 tgagatcttt catagtggaa ggttaagtct gatgctaatg cttatttaaa atggtgacag
      241 tctgaagtag tgaagccttg ccgggctgct ttaatttctc cctggaatag ctctctccca
      301 accttcggca gcacatcaaa gtctctggag ctcaattaaa attggattat attgaaatgc
      361 tctatctatg gaactgtgtg ctcactaaca cttttctttc agtaatactc cagatgacag
      421 ttgcccatcc caatttaaac agttgtcata gagaccatga actaaagcag cagtaactaa
      481 caatacaaag gaaaggtaag tggtaggatt tctgtgaatg aagggcttgg ttggcaaccg
      541 cagtgctcac actgcaagta gctaaatgca aaaaaacat
//
LOCUS       KCLJ01000703             512 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 79287cal ultra-conserved element locus
            uce-5054, sequence.
ACCESSION   KCLJ01000703
VERSION     KCLJ01000703.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 512)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 512)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..512
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="79287cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>512
                     /note="ultra-conserved element locus uce-5054"
BASE COUNT          146 a           97 c           98 g          171 t
ORIGIN      
        1 ttactgattg tttacaaacc ttgtgcttta tggcaatggg agggtaacat accttcattg
       61 tttataaaat gacagctcct aatggaccat attagcttta acacaaacta ttaaatcctt
      121 ttcattaaat tattctgcgc tctattttgg aatcttgtta gctctgggaa gtaggtgcaa
      181 actcctaagg aaacatgagc acacattgag actattatag ataatgttta ttaaataagc
      241 ctctgaggat gtttttcttg ggttgctctc aagcattttg aaggagtcgt gttccatgtt
      301 tgaggtccca tgtttcttcc tcttaaacta tgagcagctg tagcacatga cctacttctg
      361 tagaaccctg taatgatttc cttccttcag tggcttcagg agtccctctt ctgccctgtg
      421 aaaaaaaggg acaaatattt taatccaagc aaaatggtaa agcaggtttt gttggtttca
      481 gggaagaaac tcaatacagc tacatcactg ag
//
LOCUS       KCLJ01000704             509 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 79394cal ultra-conserved element locus
            uce-2502, sequence.
ACCESSION   KCLJ01000704
VERSION     KCLJ01000704.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 509)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 509)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..509
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="79394cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>509
                     /note="ultra-conserved element locus uce-2502"
BASE COUNT          133 a          101 c           93 g          182 t
ORIGIN      
        1 actgatcact tgctagacct gggatatcca agcagtattt aatcacttac taaattgaga
       61 aaagttgctg tcgtttattt ggagatatct tacactttgc tgaagtctcc agggcttgct
      121 gacattcctg actctttgtg aatgagttat tttcccttca tttgtttagc tctttaccta
      181 attgattttc tgtgctaata cactaaaggt ctgaagaagg cagagcctca ggtgtgacag
      241 atgaaataag gtgcttttag tcattgcttt tatcttccat gtctaatgtg ttggttacat
      301 ctgtgcagtt taacagcaaa atcaatacat catttactgc cagtatctga aagaatttgg
      361 aagcctgttg gtgctttaac tattaggttt cccctgaaag gctttcctta ccctgctcct
      421 cctgaagtca aatgttgcag gaaaacaaga tctctttcta tctcctgtgt atgcatttaa
      481 gtttattaaa ccagttacct gaactacct
//
LOCUS       KCLJ01000705             458 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 79501cal ultra-conserved element locus
            uce-1056, sequence.
ACCESSION   KCLJ01000705
VERSION     KCLJ01000705.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 458)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 458)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..458
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="79501cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>458
                     /note="ultra-conserved element locus uce-1056"
BASE COUNT          168 a           80 c           55 g          155 t
ORIGIN      
        1 aaaataatta aaggaatcat ttttagcctg gcataattag ctaatccact ttacatgcac
       61 ttattaaaat gaatttacat gttatattcc ataggtagtt acacaatagt gtttatacag
      121 gaaaaatata atgaaccaaa ctctttgtat ccagctctcc acaattaaaa cgaagactcc
      181 ccaagtaata tcaatctagg agagactaat taagtttggt ttgataacca ttcatttctt
      241 ctattgcctc tgagcaaatt gtttattaga gaaagttatt ttacacaaat caaatcaaac
      301 tgggtaaacc attatatttg agagaaacct tagccatcag tcaattaatc catcattttc
      361 tccagacact tttgtttaac aagcagatca tattatcaac aatttagata tcctttgatt
      421 caattatgac agaaaattta ttgacagctt ctctaata
//
LOCUS       KCLJ01000706             526 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 79602cal ultra-conserved element locus
            uce-1174, sequence.
ACCESSION   KCLJ01000706
VERSION     KCLJ01000706.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 526)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 526)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..526
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="79602cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>526
                     /note="ultra-conserved element locus uce-1174"
BASE COUNT          165 a           84 c           92 g          185 t
ORIGIN      
        1 aatattatac tcgctgacat ttatgtatca gagcaataag ctaaacagga aacaatttat
       61 gtcacctaaa gctttttaac aaatcgatgc aactatttgt aattgcttgt ttcacaagat
      121 taaaagtact cagccttgat cttcgcccac agttttgtgg ccaacatgac ctgtgcttcc
      181 gttgtaaaat aggagagtta gtgatcagca cctatttcca tcaagtaatc catattgcta
      241 atatttctgg aattttaatg tagttacaat ttatagccga tcaaatgtgg ttacctaaat
      301 tgctgttgct agtagacagt ttaactgtct ttattaatta cagtataatt taatgtttga
      361 gtacaggcac ttgtgttggt catttttaca gccaaagcag ttatgtgcct tatgacgaac
      421 cattttagca ttttcaatgg aaatttgcta atatgatgag tgataaaaat gtcaaactct
      481 ggtaaataat ggttattgct ttggctggaa ttaatccttg aaagga
//
LOCUS       KCLJ01000707             659 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 79710cal ultra-conserved element locus
            uce-678, sequence.
ACCESSION   KCLJ01000707
VERSION     KCLJ01000707.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 659)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 659)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..659
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="79710cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>659
                     /note="ultra-conserved element locus uce-678"
BASE COUNT          185 a          113 c          143 g          218 t
ORIGIN      
        1 aatgtttgca aattttcctg actacttgat tagaaaatgc accaagtaca ggcatcagtt
       61 gagtatgcat tatttaagtg gttggagtct ggtgacggtt tggaagctgg agtcattgtg
      121 gttgcctcta ggaaaattgc actttctggg agaaattctt tcacctttgt gtgcccacag
      181 tacagatctc tcctcatggc agctctggaa ctttgtgacc tggaaaatgt gggacagcat
      241 acacaaggtg accccctgaa tgctggggta ggcccaatta atttaaaatt ttgcttggcc
      301 ttgtctcttc caattttcta aatcctctgg aaaaatgatt aatgcgtaca ctgccaaagc
      361 gaaaatattt ttgaccctat taaaggcgat caagggtaaa ccaagtgtag gctggcattg
      421 tatcaaacta gctttattaa atttgatttg aggtttgtat gaggaaggga cagacaagga
      481 cattattttg cacagcaact cccttttaaa atactgtgag gaatacaaag tatgtacttt
      541 gggtatttaa cctaacagaa ttttacctta gtattttgtc agtgggaaag cgtattgttg
      601 gtaaagtata tgatgattgt ttcccttgat tcagaccttg ccttattttc agattttta
//
LOCUS       KCLJ01000708             551 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 79818cal ultra-conserved element locus
            uce-3970, sequence.
ACCESSION   KCLJ01000708
VERSION     KCLJ01000708.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 551)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 551)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..551
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="79818cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>551
                     /note="ultra-conserved element locus uce-3970"
BASE COUNT          175 a          113 c          107 g          156 t
ORIGIN      
        1 gtggatatat cattaccccc ataatctgaa atgtaataat tcaaaccttt acaaatttgc
       61 attgatacca tgtttctggt aactcagcct aagcagctgc atcatgcttt taaataaaag
      121 ggggcaatga aaacgcaggt aacttttctt tccgtatgct aactgagcaa tgtagtgtct
      181 gcatcatgtc ctctctccca agtccaggtg actctaatct tagctttgca ctgtgttcca
      241 gatgcggcag gccagaaggc tgtcgaatcc ttgtatacag aggtatacat caagaactgg
      301 tgaatgcagc acgtatgtgg gctctcatgg gccttcttaa cagagggcta ggactagaca
      361 ctaatttgca ctataaaaaa taatgctacc ttactgaaaa ctaactcatc aataatatac
      421 aggtttgcac tgaaagtgat tggaaattta accataagta ggaaagcacc taatttgcat
      481 gagagttcat actttacatt tgttttgaaa ctgcgccaaa gagaatggaa gctgcccaca
      541 aactaataca g
//
LOCUS       KCLJ01000709             399 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 79929cal ultra-conserved element locus
            uce-3683, sequence.
ACCESSION   KCLJ01000709
VERSION     KCLJ01000709.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 399)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 399)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..399
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="79929cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>399
                     /note="ultra-conserved element locus uce-3683"
BASE COUNT          135 a           73 c           61 g          130 t
ORIGIN      
        1 cagcacccag ccttcaaaac aagagctaac tttttttgca gttgtgaagt attggatcca
       61 attactccaa aaaaccagag ttcattttaa taggatttgt agtaaaacaa ggcatataaa
      121 aatcagatgc ataggcaaag aatttttcat ctttaatcat taagctacca gtacaaattg
      181 agccctgcag ttatttcatt cccaaaggag agcagagatt taaagaattc agaggattaa
      241 atatttgtgt ttcagtgaac atgctaagtg tttttgtggc tgctatcatt aaaattgtat
      301 ttcaacactt tatttcaaat gcatatgata cacattctct ctaaatgata gcttgaaact
      361 cttggtcacc tgtgttatat caccatcctt cccacaaat
//
LOCUS       KCLJ01000710             597 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 80036cal ultra-conserved element locus
            uce-3242, sequence.
ACCESSION   KCLJ01000710
VERSION     KCLJ01000710.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 597)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 597)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..597
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="80036cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>597
                     /note="ultra-conserved element locus uce-3242"
BASE COUNT          180 a           99 c          102 g          216 t
ORIGIN      
        1 tgcagcatgg atttcctttg ttttatacag taactcttgt atgttcataa cccctgtata
       61 aatattttta ataaaattat tccttctcta tcagagttgc taaattctct gtatagctta
      121 aacacttcag tgcatcatta tacatacttt tctattagtg gcttgcttac aagtatttgt
      181 cttagttgtt tgctactctt tttccttcac ctgtcctgaa tattgccatg aatgtttcta
      241 atttaaagcc agaggagtca gtggctgatt agaagacagg aaattggagg attaaactgt
      301 ctggttgaac ttcctttact tatcagtact gtgtaactca cactggatta taaactcatt
      361 gggacaattt ctacagtgta tcagtacttc cgttttcttt ttttgtggag aaagtactgg
      421 ggaaaatggg caatttgcag gtaaaaccaa atacttttta ataacagcga agcactggaa
      481 gattaaattt gtacaaatgt cttcaggtat gagaattcat tcaattttaa gtcaacaggt
      541 ctataatata gattaaattc agtatgtaaa caaccaagca acagatactt tcgggga
//
LOCUS       KCLJ01000711             543 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 80144cal ultra-conserved element locus
            uce-5055, sequence.
ACCESSION   KCLJ01000711
VERSION     KCLJ01000711.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 543)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 543)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..543
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="80144cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>543
                     /note="ultra-conserved element locus uce-5055"
BASE COUNT          155 a           98 c          125 g          165 t
ORIGIN      
        1 aggggaaacg cttcagaatc ggagatttat gaattcgtag taagcagttt cccggcatgt
       61 aaacaaatct cactgggctg ttttaggaag gtgggtttgg gcagcggagt aatcattttt
      121 attattctga ttttccaaat agaaatggac atatatgata aaaatgtcag gcgcgctctc
      181 cacgtcaggc tcctaacagg attacatgtc agctcttaat gtctcgctct gtttttcttt
      241 gccatgaatg gctgcattat tgctcacagg aacttcactg taatatatgg taagagacaa
      301 gtagctcttt atggccagtg attattcggt ttgaatgaaa cctgtgattt atgtccattt
      361 aactgaaaag ccttgtaaat tcccagtgct gcatttttcc tcaatagaga atgagtcaag
      421 cgaaagtgac aactaggttg gcgtggaaat gtgcagtgca tcgtggtgtt atatttaata
      481 tacctgacat gaaaaacgtg cgcacaccac gcagtcacct taagtaggag tgagagtgac
      541 att
//
LOCUS       KCLJ01000712             829 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 80224cal ultra-conserved element locus
            uce-260, sequence.
ACCESSION   KCLJ01000712
VERSION     KCLJ01000712.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 829)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 829)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..829
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="80224cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>829
                     /note="ultra-conserved element locus uce-260"
BASE COUNT          298 a          133 c          149 g          249 t
ORIGIN      
        1 tagatttgtt gattatagtt attttattct ggtaggatga catggaaaaa gaaaagccaa
       61 tacctgagtc tttttacagc taatgagatg agactgaata cagtggagag agaaatataa
      121 gggaaaattg cattctgcac tagcacaagt ccaaatacat atttgtaata caagccacag
      181 tctccttcac atttgcagca taaaaataac cctcaaacag aaacattaat tgaacagtaa
      241 ctcagattaa tgttttgtaa tattagttca caattattac tctcagctaa ggtcaagaag
      301 tatatagttg gatattcaca aagaaatgac tgatttaaaa acaaagagct ctaatggaat
      361 tcaatagtgc ttttcagtca ttccagttgg catctctatt acctgaaatg attcacagtc
      421 cattatggga gcttccatgc taatagaatg tctatcttct gtaatacaga cacatcaggg
      481 cactaactga gaatctgtca caatgaattt catctagatt tcacttcatc tcttcatgga
      541 ctgtaaaatt tgctcttgta caatgcctaa atttactgtg ggtaattgag agagatctat
      601 agatgcagca cacagtaaaa agcagttttc caaagatcta ttgtaaattg tgcagatttg
      661 gttcagttgg gaaaagatta tgaaatgctg gacaccactg gctgctaatt aaaagctctg
      721 aaaatatttt taatggatca tgatgaatag aaaagtgaaa acagcagcct gggtaaaata
      781 tctctcttgc agctagaaag gcaatgaaaa agcttttgaa atctaagaa
//
LOCUS       KCLJ01000713             592 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 80335cal ultra-conserved element locus
            uce-197, sequence.
ACCESSION   KCLJ01000713
VERSION     KCLJ01000713.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 592)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 592)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..592
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="80335cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>592
                     /note="ultra-conserved element locus uce-197"
BASE COUNT          229 a           98 c          107 g          158 t
ORIGIN      
        1 aatcaccacc aaagtaaagg gtgtttgaga aaccgtaagg gcagaataaa aatttttaat
       61 gaaaaataac atgtcagtta ataatagagc tgacctatgt ttaagagaga aattttaatc
      121 atgtgcatat taaatattaa taacctattc tgttattgtt ataataaggt taagtaagct
      181 tctccatgct taaggaaaga gaaaaagtag gaatatgtaa cagtgaaaaa aagcactgag
      241 aagcagagac ataaggaaaa tgtgtcaaca ataaacaaga ggaaatgaga aagaaggaaa
      301 agatgaaggt ggaaactaat ctctatgtgt cattatgact gccagagtac tggcaaagca
      361 gcagcatcct tttatttcaa ttttaatcat ttctgaattt taataccctg ctccttttgt
      421 aattctcctg gcattcccta tatgcatcca tcccagccaa aacaccagtg taaattaaat
      481 ggcacacaac cacaccactg atgtagttct cccagtagaa ccaattgagt gaccaaaaag
      541 cagagaaggt atgactactt tgacagacta ctggccaatt aagtgactta at
//
LOCUS       KCLJ01000714             703 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 80446cal ultra-conserved element locus
            uce-4295, sequence.
ACCESSION   KCLJ01000714
VERSION     KCLJ01000714.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 703)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 703)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..703
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="80446cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>703
                     /note="ultra-conserved element locus uce-4295"
BASE COUNT          211 a          163 c          143 g          186 t
ORIGIN      
        1 ggactgaggc tgagcagcag cctccaaccc cttctcctga aacaagctta gtctttgttg
       61 cactgtattt acttctgttt tccaagagta gggaaaagca aacaatgtag aaaaccttta
      121 atttcacccc agctggtaaa aatgatagct ggatatgcac acatcagtat aatcgtctcc
      181 taaacaaatg gcacaatgac aaaccgaggg ggcggggaga gggggagcag agcacaagct
      241 ggtgttttca atttagaaag tatgcattat ttacactgcc attattccac tcaatttgag
      301 ttcacgcttt agtcctaatt tcagtataat caaagtcaat gaatatttaa tcagcattgc
      361 ttccagaaat tgagtaatgc cattaacata atgtccccag gacttcaatg ccgattttcc
      421 tcaaaagcat gggactttca ctcttcctgc ccaccagttg atgctctgat ccccaccttt
      481 gctgggctta acaaggtggc acaaaatgca gtgaatggga gcaacacttc ccaaaagcag
      541 agatgtgtcc ccaccgatgc tgaagcccca ggatgggtaa taaaagcaga gcatttccct
      601 tcaatatggc tcagtatgga taagcatcct aataacaata atccatttgc acttctggag
      661 cacctttcaa tggaggggct ccagtcattc tgcaggcatt aat
//
LOCUS       KCLJ01000715             674 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 80556cal ultra-conserved element locus
            uce-1899, sequence.
ACCESSION   KCLJ01000715
VERSION     KCLJ01000715.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 674)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 674)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..674
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="80556cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>674
                     /note="ultra-conserved element locus uce-1899"
BASE COUNT          213 a          138 c           97 g          226 t
ORIGIN      
        1 tatttataaa atacatagaa gtctatcctt gaaataatca tatcatgaag ttttgatttt
       61 gatctctaca ccaaagatgg acaaagagtt acacacttac atattaaagt tgtgtgttac
      121 attttatatc aattaaataa atattagaca gactcccact actctttgtt tagctgtgtg
      181 gggctcagct gtgctgcttc taaccccaac tacatcactt caaattacca gtaaattaac
      241 agagtaacac tttcaacctc agagcagatt tgatccaaat agtctttaaa tgccatttct
      301 gttcctatta acctgaagat cggcatagca gatattttcg taaggctgcc cagcaataca
      361 gggcattaat ggctaagttg tgacagcact tttcatgatg atttatgatt cagtgtttaa
      421 cttgattact ccactgctga ctctgaatac tatttcaatt agtgcacaga aggtcacatc
      481 acaaatattc ctctataatc tattcctatt aacactaata cacagagtaa ccaaatcttt
      541 tcacccttgt tgattcaaac catccatagc gctaactgca gacttgttta ccagtttact
      601 tctctggaca catctgaaat ggtaattttt agtctttgag tatcattagt agctgtacca
      661 tgccatcatg aata
//
LOCUS       KCLJ01000716             793 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 80667cal ultra-conserved element locus
            uce-6885, sequence.
ACCESSION   KCLJ01000716
VERSION     KCLJ01000716.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 793)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 793)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..793
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="80667cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>793
                     /note="ultra-conserved element locus uce-6885"
BASE COUNT          253 a          140 c          130 g          270 t
ORIGIN      
        1 taatgaatgt tcctttcatt ctgcatttct gtataatatt ggaaattgtg tttttattag
       61 aagaggtatt ggatggaagc caacaatttc ttcttttaac ttgatatttt gggctctgat
      121 ctttgttaaa actacaatgg catgtatcta gtacagtcag aggtcatttc tatagctact
      181 accatttcct atcatttctg gggaatgttt gttttcaaaa caaagaattg ggttaaagct
      241 taagtatcgt atttcagaac atatttcaaa ctgaaattaa gaatgctaaa acctttcctt
      301 taaaggtcag atgatattta ttattattat aaaaatgatc tgtgatttat gaatttaact
      361 tctcgtaaac ctcctttgta acagaatatg cagtcagaag cttaacatta cattgttttc
      421 ctttgacaac gtatccacga gaccactgca gctgttcctt tactcacaat agcagattaa
      481 ttaacacaat catatgctgt tggctcctac tcaatgagta ggtctgcagt gggatagata
      541 ggtaaatcct ttaaatgtgt atgagataaa gaatatacta tagtagtttc ataactagcc
      601 agttttgctt ctgactagtc agccctatca gcaatggttc actgactaca gaagctgtga
      661 gcttacattt caaaggcagc cacacctatt acagagcaat aatgcctgaa tcattgcaaa
      721 actcaaatat gtaaaagcac aggcacgctc agaaatcacc atatttgcta aaatagtctg
      781 cttcaagcat ttt
//
LOCUS       KCLJ01000717             761 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 80778cal ultra-conserved element locus
            uce-8043, sequence.
ACCESSION   KCLJ01000717
VERSION     KCLJ01000717.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 761)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 761)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..761
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="80778cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>761
                     /note="ultra-conserved element locus uce-8043"
BASE COUNT          253 a          147 c          154 g          207 t
ORIGIN      
        1 ttgcttgaca agcatctctc caagcatgtg gagctcccta ctcatgtctc accccatgct
       61 gcacatgcac tgccacccag cacgctttcc acattgggtc actatcactc agccctagaa
      121 ggcacaattc ctattccacg tgccccactc tgaaaatttc cttctgcact gctgctgtgt
      181 ctccagctca ataaaaaatg gcacaaaaca ctttaaagaa ataacatatg catccttggg
      241 ttattgtgct gaagaaagag ataaaacagg aacaaagtaa gaaattatat tgtcagaaaa
      301 aatgtgaact ttttgattgg ggatgacatt tattttaagt gtgcaatgac ggcagggaat
      361 ctgtcagggt aagacatggc agaggtttca acgtttgtta agagcatcat gggaatttaa
      421 ctaaaactgt taaaactgac actattggct tttgttaaca cattaggcat gggaaaagtg
      481 ccagtcagca tatcctccat agcatcagtt cagttaaatc atctggaaga cgcataaaac
      541 tgggtgtgat aataaatgca acgttttcca cacatagata gaggaagcag aaagggacag
      601 gaccattttg acaagaacgg tttttaaaaa tctgcacctg ctttgtaatt tagcatgcaa
      661 gagggaggaa ggagtttcag cttttaaaga caagtgaaac aaacttacta agtgcttata
      721 gtagaaaata acttaatact agagtgtata tttatggaat t
//
LOCUS       KCLJ01000718             824 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 80890cal ultra-conserved element locus
            uce-574, sequence.
ACCESSION   KCLJ01000718
VERSION     KCLJ01000718.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 824)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 824)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..824
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="80890cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>824
                     /note="ultra-conserved element locus uce-574"
BASE COUNT          218 a          140 c          193 g          273 t
ORIGIN      
        1 gatttcaaaa cagatttgag gttccagagt gcggccatcg gtgctctgca ggtactgccg
       61 agggccggct gggctgcggt gcctttttaa cgacgtttct tgtgctcttg aaacaggagg
      121 ccagcgaggc atatctggtg ggtctgtttg aagacacaaa cctgtgtgcc atccatgcca
      181 agagagtcac catcatgccc aaagatatcc agttggctcg caggatacgg ggagagaggg
      241 cttaagtgaa ggctgttttt atggtgtttt gtagttaatt ctgtaaaata ctttggtttt
      301 aatttgtgac tttttttgta agaaattgtt tataatatgt tgcatttgta cttaagtcat
      361 tccatctttc actcaggatg aatgctaaaa gtgactgttc acataaacct cagtgatgtt
      421 gagcctcggg ctcgggagtg acaagttgct aatatgcaga agggatgggt gttctttctt
      481 gcttctcatg catgtttctg tatgttaatg acttgttggg tagataaact tgtaaggtac
      541 tagaattgat ataaatgtgt acagggtcct tttgcaataa aactggttat gacttgatcc
      601 aagtgtttaa caattggggc tgttagtctg accatgcatc actgtgatca aatgtggact
      661 tccttcagag ggtgaaactt caagtcttaa ccacagtgta acttacagtt tcctaaaaac
      721 gtaaacctgg cagctataga atacactatg tgcatttata atagctattt tatatattgt
      781 agtgtcaaca tttttaaatt aaatgtttta cattcacatg tgag
//
LOCUS       KCLJ01000719             381 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 80997cal ultra-conserved element locus
            uce-2347, sequence.
ACCESSION   KCLJ01000719
VERSION     KCLJ01000719.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 381)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 381)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..381
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="80997cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>381
                     /note="ultra-conserved element locus uce-2347"
BASE COUNT          123 a           54 c           71 g          133 t
ORIGIN      
        1 taaaaagagc gttatctatt agttcaatta gacatcagac atttactttc caatgtattt
       61 gaagactgat ttgatttggg tccaatcatt taaaaataag agagcagagc tgtgtacaga
      121 gctgtgtaca gatatctgta gctctgaagt cttaattgca aattcagata aggattagaa
      181 ggggctgtat ctctgtagac caaaggtatt tgctaatacc tgagatataa aagtggttaa
      241 attcaatatt tactaattta ggatttccac tttggatttt gattaagctt tttggttgaa
      301 aaccccatgt tattaagctg tgatgaggga aaaagctact ctttcataag cctcgcttta
      361 acgctttatt tcaaataatt t
//
LOCUS       KCLJ01000720             832 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 81098cal ultra-conserved element locus
            uce-6792, sequence.
ACCESSION   KCLJ01000720
VERSION     KCLJ01000720.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 832)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 832)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..832
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="81098cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>832
                     /note="ultra-conserved element locus uce-6792"
BASE COUNT          270 a          158 c          181 g          223 t
ORIGIN      
        1 tgatctcaac taggaaaatc taattaaaaa aaagactaaa aaaaaatagc acaagtgaaa
       61 gcaacaactc accataacgc tcagacaata atcatggggt tgttcaacag tttgcttgtt
      121 tgttttcagc aagttatagt tttgcttttt atttgaagag ttgggagcag gaaggagact
      181 gcctaattgt agtgaaaatt tatcataatc cattatttaa aatattctac tttggacagc
      241 aaggtaatat ttaaaagcag tcagcaagaa gtggaaactc tggttttgta acagttcaca
      301 tgtcagactg gcaaagtgcc cacagtgtac ggcagaaaaa tctatttaat gtctgcccca
      361 caaggcgaca tgaggcttga ttggcagaaa gcagagagtg gcttttgatc atgtgtccta
      421 acaagcagtt ccagctcctg tctcttcggc tgagcggctc cacattacct attcaaacag
      481 aagtgacagg ccactgcact actctttggc tctagtctca cgcagtggga gctatgctgg
      541 agacagagcc actgattaaa tatatcactt tttcaagaca agcaggttgt ctgaatcaaa
      601 gttggacaga atagactcaa cattattaaa agaggatata aaactggagt tgagtgatgt
      661 taggccagtg tgtacagcct cagggattca cagactgaca aggggaataa ggaacagcag
      721 aactcataaa gcagggtcag aaattagctg tgacaccttg gccattttcc catcacttca
      781 gggccactgt gtttcaaatc ctgtagtctc aaaatgattt tctgtgcgga aa
//
LOCUS       KCLJ01000721             348 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 81199cal ultra-conserved element locus
            uce-2365, sequence.
ACCESSION   KCLJ01000721
VERSION     KCLJ01000721.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 348)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 348)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..348
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="81199cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>348
                     /note="ultra-conserved element locus uce-2365"
BASE COUNT          129 a           40 c           61 g          118 t
ORIGIN      
        1 ctttttggat acttataaat gagatattat atttccatac attttatttc tggccacatc
       61 tatgaatcta atattgacct ggagttatct gtgatagaga agttattaat tttgacagat
      121 ataagggaga agctaatatc ctccttttac aaacacctaa tattaatctc tagtgatgta
      181 aacgagaact ccagaatggc ttggggtggt gctggaaatg atataagatt gaaatttgat
      241 aatgaaaaag ggaaagatta attttagaaa attgataaaa tagataaaaa attgtatttc
      301 ctatgaaata agtgtaggaa gcacaactta gatttagcat ccattatt
//
LOCUS       KCLJ01000722             364 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 81300cal ultra-conserved element locus
            uce-4798, sequence.
ACCESSION   KCLJ01000722
VERSION     KCLJ01000722.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 364)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 364)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..364
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="81300cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>364
                     /note="ultra-conserved element locus uce-4798"
BASE COUNT          135 a           64 c           48 g          117 t
ORIGIN      
        1 tgttccagat attcaggatt caaaagaact ttcatttcct cactgcaaaa ggcaacagtg
       61 aacaatccaa atgtgaatgt ttatttttgg tcagcgttct ccatgtagta ttatgtattt
      121 ataagccaac tttcatataa agtgcaaatg agaaaactaa aaaagagcaa ctccattgaa
      181 caaatgaagt ctttcctttt tataaagatc aaaaacaaat tagctgcctt gtctgcacta
      241 caatgaagta accatctaat tattccaaat aacaaattac tgaatgtcac aatgtattat
      301 ttgaatatgc ttgatctaga ataattgatt gctgcacaat ctatcactgt ttatcctaaa
      361 caaa
//
LOCUS       KCLJ01000723             672 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 81398cal ultra-conserved element locus
            uce-2882, sequence.
ACCESSION   KCLJ01000723
VERSION     KCLJ01000723.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 672)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 672)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..672
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="81398cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>672
                     /note="ultra-conserved element locus uce-2882"
BASE COUNT          172 a          106 c          131 g          263 t
ORIGIN      
        1 tttacatttt aattaagaat tgttgatgct tattttaata agacatccat tggagtataa
       61 cttagcagtg tgtcttgacg ttactcattt tcttatattt ggaattgtcc tgtgccataa
      121 catttctgat tttttctgat cattctttat gatcatgttg attcacagct ttctgaaaac
      181 ttgctttaac attaaaatat tttggaagag atgctgctgt tgtgatactg tgtttcattt
      241 tgtaattcca tctgctgctt aggccagata tgcattttct ggatgcaatc tgttggtttc
      301 caatggttta ctacatggtg ggctctatcg acaagtaggt gcaataactg ttagaccttt
      361 gtagtctcag tggtttggtg tgtgttgtca ttgcatgttc tgtgtgtgtg ttgtagttgg
      421 agatgagctg tccgctgtat ttcacatttc gatttataaa gaagctcatg aggagggagc
      481 acaagttaac atgttcaaaa ccataagatt aacacttatt taggctactt catatgtttc
      541 tttatagccc tgattctagt gtcagtctgt actgagattt cttggaattc attgactcag
      601 gctttgtaaa gacagctaga gaatgtacag tcttgaataa aagtcttcat cttacactac
      661 ttaaattatc ac
//
LOCUS       KCLJ01000724             762 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 81507cal ultra-conserved element locus
            uce-6746, sequence.
ACCESSION   KCLJ01000724
VERSION     KCLJ01000724.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 762)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 762)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..762
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="81507cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>762
                     /note="ultra-conserved element locus uce-6746"
BASE COUNT          203 a          164 c          173 g          222 t
ORIGIN      
        1 caacccacaa acaaaaccat ggatgaatct gctgagctag tttgctgatg ttagaaacag
       61 ttgttcatat taggaacacc taatttaatt tcatgaaaga gacataacat gccagtatgt
      121 gtatgaatct aaggtatgca tttcctaaaa ggaactaaaa ctctgtcatt ccaaagttgc
      181 tcttcttttt gacttccagc ttgcatgggg actgctgtct ggaagcagta actttaactt
      241 taactctaag gctgctgatg aggtctgtct gtgtgatctt cgtaagcaga taagggtagg
      301 gagacagctc agagcagagc ttgtttacag caggacagaa gaaaacagct agacataaat
      361 gagggctgac ggtttcatga agcacaattg gttgatcaca gattcaatat gactgccctg
      421 aactgagcga tgatccgtac agtatgcaaa attcactttc ttgctggtct gtgcccacca
      481 gccttccagc agctttccca gagcccctca gccacggctt tgagtggaac cagagctgaa
      541 cgcagcattg ttgtacccaa ttccttttga caacaatcac attcttttaa aaacttcata
      601 ggttttagtt gtcactggtt ataaatgacc ctcgccattg ctgctggctg ttgttgggtg
      661 ctcgctgctc tcccagagat gcgagtgctg caggttctgg tgctcctggt tttcctttgt
      721 ttatcagaaa gcagacggta aaggtttagg cccttttgag tg
//
LOCUS       KCLJ01000725             409 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 81615cal ultra-conserved element locus
            uce-2208, sequence.
ACCESSION   KCLJ01000725
VERSION     KCLJ01000725.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 409)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 409)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..409
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="81615cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>409
                     /note="ultra-conserved element locus uce-2208"
BASE COUNT          136 a           76 c           71 g          126 t
ORIGIN      
        1 gcttagctct cgaaaatcag agagagccca aatactctag ataaatcctc aactaaattg
       61 gcctcaagta tgttaacttt acacagcatg tataagcaag atttatttgt cttcacaggt
      121 ggaaacattt tctggtgtgt acaagaagct cacaggcaaa gatgtggtgt ttgaatttcc
      181 agaattccag ctgtaaaatg caaaaaatgg ctgaataaac aactattcat ataactaatt
      241 tcatttaaat tttgaattcc atattaactg gtttatggga catctccact gttgacacct
      301 gtgaaaagta ttaactttta atggtagccc tcttaggttt ttcttggcac tgttgcaaca
      361 cgaaaaagag tccagagcct gctaaaagaa ttcatactgc ctaagcatt
//
LOCUS       KCLJ01000726             414 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 81725cal ultra-conserved element locus
            uce-7665, sequence.
ACCESSION   KCLJ01000726
VERSION     KCLJ01000726.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 414)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 414)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..414
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="81725cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>414
                     /note="ultra-conserved element locus uce-7665"
BASE COUNT          128 a           78 c           75 g          133 t
ORIGIN      
        1 ctccactgcc tgccctctcc gcaaacttca gcccctcttc ttcctctgta ggaaatttat
       61 gccctttggg ttcaaaaaag gctcctagag ggaaagagaa agagaatgaa aatgatttta
      121 attttttttt tggcgtagaa atgaagctga tattgaaagt gagtaaattt taatgaaacg
      181 gtgcaaaaat gacatcattt actcagaaat cattaatttg tcagcattaa tatttcagct
      241 acaacattgc ctgtcattct gtgccagcaa tgactgataa atctataaaa gtgtgctgct
      301 aatttactga atatttatgt gcagtgtcat ttgcagagta ggatttgaat ttatttcact
      361 cagtattcag ctggagaaca tttctaacaa acccaggctg tgcttgccca atac
//
LOCUS       KCLJ01000727             685 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 81835cal ultra-conserved element locus
            uce-6311, sequence.
ACCESSION   KCLJ01000727
VERSION     KCLJ01000727.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 685)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 685)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..685
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="81835cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>685
                     /note="ultra-conserved element locus uce-6311"
BASE COUNT          200 a          113 c          136 g          236 t
ORIGIN      
        1 gaaaataata aagtgttttc tttgtattga ttgaagaaat atagtgctta ttttttgctt
       61 ggttttctag tacttattca ataggttaaa gggcaatacc atctgtttcc taacaggaca
      121 ttttgtgtaa gatttgcaag tcctacaggt acctttaagc atggataaat atgcactcat
      181 ggtttcagct ggatagtttt tcaccaccaa aggatgatta tgttgtgtgc cttgagacat
      241 aggctataat atatttcctg tccctttatt gcattttgga atcataaaca atgactgttt
      301 ggctcaaagc catttattca gcccaaaaag acattatttg cacaacaaaa atcaataaaa
      361 atgttactag gtctggctgg atactttgct taactgtgat atttgtctgt cactgatggc
      421 atgccatctc tcgtaggaga ctggggccaa aacagagcta ttgatccagt catcagtgat
      481 ggatactggc atttggaacg ggctgctgca gagaatctcg attaaaaaaa atatttctat
      541 gttttgcctg cagcagaggc aagataacct gaatgaggag attttctctt ttatattggg
      601 tttctcctct tgtggttgtt aaatgctctg gaccaaagtt cattattgaa agaattaagt
      661 caatctatgt ttagccaaag gcttt
//
LOCUS       KCLJ01000728             583 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 81946cal ultra-conserved element locus
            uce-6797, sequence.
ACCESSION   KCLJ01000728
VERSION     KCLJ01000728.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 583)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 583)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..583
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="81946cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>583
                     /note="ultra-conserved element locus uce-6797"
BASE COUNT          170 a          114 c          130 g          169 t
ORIGIN      
        1 gcagcacttc aacatttgtt gtgtttacca gtttttcaaa agcacttcaa aacagtagga
       61 tgagcctcgg gtcaatgcag ctgatttcta actttcatgt ctctcccctt tccaggggag
      121 gagctgcgga gggagccagt gacaaagagc caaagtctgt aaggttttcc caagagcatg
      181 gaacaaatgt aggagggaga ctatgaatca ggatccagaa tgcactgtcc acagcagcag
      241 ctctgaacct tcaacaagac atttttcgag caaggttttg gaattttggt gggctctgac
      301 ctgcagtttt cacttccaaa ataacttgac ttttctaaag tggtaatttc attttcatga
      361 taatgctaaa ctcaagccac atgtgcttta atttaaagca ggactcaggc agtgggccct
      421 gccaagaaac agtagagaaa catgcttatt ctactagttt gcttgaggca ttcagcattt
      481 ttgaatgcct aggcagaaat atagttttta aataagccaa tcccgtgaga gcagaatttg
      541 cattaagttt ttgttgcatt ggctggttaa ataagaactg atg
//
LOCUS       KCLJ01000729             465 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 82050cal ultra-conserved element locus
            uce-5789, sequence.
ACCESSION   KCLJ01000729
VERSION     KCLJ01000729.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 465)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 465)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..465
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="82050cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>465
                     /note="ultra-conserved element locus uce-5789"
BASE COUNT          148 a           89 c           85 g          143 t
ORIGIN      
        1 gtacgcagct ctctgacaag tagaataata acggtcatac atcactgccc tgaaagtcca
       61 atcatctaaa tcttcactcg ctgcagcctc tgagactcaa ttactttatt gacatgcaat
      121 cttcataagg ggagaaatat tgtgcatgta aggtcacttg gttatgaaga catattatca
      181 tattatctgc atgagggttg cagggctaag acctgacaga gctaattata atggtacatg
      241 atagagagct cagtacacat tatttgcttg gctgaaacta aaggtgaggt aagaccatga
      301 catcatggtt tcaaaagaaa ataattccct ttcccttaga gactattact tttattgttt
      361 aatgttttgt acagattata ttcatacact cctcatgcaa gcaagcagtg agaatttctg
      421 aattcaactg tttccatttg gaagtactta actctcgaag aaacc
//
LOCUS       KCLJ01000730             879 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 82156cal ultra-conserved element locus
            uce-949, sequence.
ACCESSION   KCLJ01000730
VERSION     KCLJ01000730.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 879)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 879)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..879
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="82156cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>879
                     /note="ultra-conserved element locus uce-949"
BASE COUNT          248 a          138 c          200 g          293 t
ORIGIN      
        1 aaaggtctgc agtctttcaa attgtcattg cttctaactg gagcttcata gaggaagaaa
       61 tcagagttgt tttttcaaag agacaaattg cagtgtgctc cagatgaaga cagcaaagcc
      121 atggagaggc tgtagtttgt gctgggtctc atgtgatatt ttggtccttt gaacatgggg
      181 ctcctgaatg tttttgccat tcatgctgac agtttgtcag gtcactcctg tgcaactcct
      241 gctgcatatg ttgcaggaca tgtggaaagc cattagttgt ttctgtctgc attactgtca
      301 ttctaaagta caatcttgcc atgcactttg cactacaagg gctagggaac cagtatcttt
      361 tatagtaatg acttccagtt tacagccttc atttgttata tttcctcaat agctgttgtg
      421 ttgagattaa ctgcataaat ggtctgcagc tggctgttat gaattaaggg agtttaatca
      481 aagtatttct aatgtacagc ataatgataa tacatggggg aagtactatt taagagataa
      541 tgatggcttc agaagatcac tgttgtaatg tttagtgcat atgccttcag cattgaattt
      601 gttgttgttc tgaatatgct taatggatca gtgaaaagct gcctaatgtg ggattgtttg
      661 atggggctga cagagctgga attagcccat tgctgtttac tgcatacagc cattaagatt
      721 aattgctgcc agataatttt gactgttttt atcttcggga aaaagtgtca ctaatgggtt
      781 tataaattgg ttcactatta ctaatagtaa ggccagtgta acaggagagg atgtgagcag
      841 ctaattctaa agataaaggt aaaaagtata aagtactat
//
LOCUS       KCLJ01000731             654 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 82267cal ultra-conserved element locus
            uce-5481, sequence.
ACCESSION   KCLJ01000731
VERSION     KCLJ01000731.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 654)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 654)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..654
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="82267cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>654
                     /note="ultra-conserved element locus uce-5481"
BASE COUNT          229 a          100 c          108 g          217 t
ORIGIN      
        1 ggaggtcagc tccttattta tacaagaaga cagaaattgc cacctgacaa aaaatggaga
       61 atgaggcata aaagttttct agtttactta ttagcactat atgtaattgg atggaagtag
      121 caggtttcaa aaatttgtct tactgtaatg accataattt tttagagatc gaaaatgaat
      181 ctgactagaa aataccatta aactaccaac ttgcttaaaa tttaaagggt aattcacata
      241 taatgctttt atttaatagc ccaatttaca aaacgtctaa aattaatgca gatcttttca
      301 ggacaaaatc agctgtaact gcaccaacta atttttgctc atttgaactg aattattaat
      361 aagagagaaa tataccatat gttcccaaaa gagctggata catttatttc aaataaaatt
      421 gccgtgtttg gtggaatata agaggtttaa atgctttcag agaaatgggt tacttatata
      481 ctgatttaat agagtataaa tcagactgca taattaggga cacagctgtt tcctaaccta
      541 aagctgccag cttttgttgg ttaagttcct ttatcacctg catggcttta atcagcaata
      601 atttgttctt cttgcggagc aatacaagtt aatcaataat tttgctgttt gtac
//
LOCUS       KCLJ01000732             696 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 82376cal ultra-conserved element locus
            uce-6805, sequence.
ACCESSION   KCLJ01000732
VERSION     KCLJ01000732.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 696)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 696)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..696
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="82376cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>696
                     /note="ultra-conserved element locus uce-6805"
BASE COUNT          243 a          121 c          167 g          165 t
ORIGIN      
        1 tcttttgtca ctgagggtga gccaggcaaa actaaataga cagcaaaagc tgacaagcaa
       61 gcgagaaaga aagggcaagg gttataaaac taatgcgagt tgtattatgt ggtgagtgaa
      121 tcatatggat tatggaccaa ggactacata attaaacatg taaggtatca aggtaaagta
      181 ccagaataca taaagaggat aatttcttta gtcagcaaat gggcaataac aggaaagaat
      241 ttttgtcttg ggatagtgag cagttgtata aacatatgat gcaaaggctt tttcaaatag
      301 acataacatt gccatatgtt ccatcaaaaa actgcagagg gacttgggaa aatcagaatg
      361 atttaagagg gactatacac atttctgcca ccacttggtt agctgaacac aggcagccaa
      421 aggtaaggag tgctgttaaa caagggcatg taaagagacc agagtgtgcc ccagagattc
      481 tcacaccgag ataatgaaag ctctcaaatg tcaccacaga actgaagctc tccttaaaaa
      541 gtggcagaga gaccatgctt tctctaggtg ctgggagctg acattgcata tgggatagct
      601 cttcccagtg gactcaagaa gcccattaaa gtggctggct atgattggaa ttatagctac
      661 tgcagcagct gagacacact gaggtgcaaa ctgatt
//
LOCUS       KCLJ01000733             644 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 82488cal ultra-conserved element locus
            uce-513, sequence.
ACCESSION   KCLJ01000733
VERSION     KCLJ01000733.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 644)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 644)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..644
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="82488cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>644
                     /note="ultra-conserved element locus uce-513"
BASE COUNT          161 a          165 c          140 g          178 t
ORIGIN      
        1 aaaattgcat ccactttctt tctgactgta attgctgcat acaaggcata ggggctcagc
       61 gcgaaggaac agccctccgt atgggcccga aacgtggtgc caaatgcttt gggaccattt
      121 gctagcatcc tacacgtgta ctgtaacctg ctgcttttta cactgaccat gctctccggc
      181 tgccctgagc gtcgcttcag gatgtgtcga tccgaggggg ttacgcacaa atcgtcgccg
      241 gcgccgcaag tcatcttccc agtagtcgag gcgccagaac tcacgaggac gactacaatg
      301 aaacagagga gccacatatg ttagcaatta tcaaccagca tggtagcgct gaatttctgc
      361 ataaagctct ccttgtttgc gctgctttcg ctttctgcaa tcttttactt aggtatgtcc
      421 ttgaaaataa caatatcacc ttccagtcta aggaactcct ttcccttttt tcttggaagg
      481 tgaaatgagc actaaataca tcattttgaa atgaattgct gacagtgtga tcagtttccc
      541 cacactctag tggcatgtgc tccgatttca gcctcatttc agcctcagca gggcaccttt
      601 ctcagtgact gcatttataa accagaatag ggaaaaggct atta
//
LOCUS       KCLJ01000734             634 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 82600cal ultra-conserved element locus
            uce-6524, sequence.
ACCESSION   KCLJ01000734
VERSION     KCLJ01000734.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 634)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 634)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..634
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="82600cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>634
                     /note="ultra-conserved element locus uce-6524"
BASE COUNT          143 a          164 c          174 g          153 t
ORIGIN      
        1 ccgtccatgc ccggtcacaa cccgatgagg ccgccggcct tcctgcagca gggcatgatg
       61 gggccgcacc accgcatgat gtcaccagca cagcccgcca tgcccggcca gcccgcgctc
      121 atgagcaacc ccgtggccgc cgtgggcatg atcccgggca aggaccgagc ccccgccggg
      181 ctctacagcc acccgggccc cgtggggtca cctggcatga tgatgtcaat gcagggcatg
      241 atgggacccc aacaaaacat catgattccc ccccagatga ggccccgagg tatggctgct
      301 gatgttggca tgggaggatt tagccaaggc cctggaaacc cagggaacat gatgttttaa
      361 gctgctacca taagactgga tgttctgatc cttgtcaaga tgagattcca agtcctgagg
      421 gcttttttgg gagcttcagg agtacagttt ggccatgcaa taggtgaaaa gagaccagag
      481 gatgctttgg gaaatctcga atgtatggaa ttacctgatt cattttaaca ggttgttttt
      541 tttttaagat ttatttttta aaaattattt ttgtggactt gggtatcccg tgacggcacc
      601 tgctttgaga atctgtagct gtattttgag aatt
//
LOCUS       KCLJ01000735             617 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 82711cal ultra-conserved element locus
            uce-2943, sequence.
ACCESSION   KCLJ01000735
VERSION     KCLJ01000735.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 617)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 617)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..617
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="82711cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>617
                     /note="ultra-conserved element locus uce-2943"
BASE COUNT          208 a          106 c          109 g          194 t
ORIGIN      
        1 cctaagatca gtatttcctt caactcgcaa acataggaca gcatgatgtt atttcagatc
       61 taaagtcagc cctgaatgtg ttaggagaaa tgttagacac atattttgat catatactct
      121 ggaggcccac taaaacagat attgccgctc tatgcaactt tttagaggca gtgtaggggt
      181 ggaaataatt aaaatgttac ctttgccaag taattcccaa tgtatcctca ctggcactgg
      241 ggtataaatg cctgccgttt tgattcatgg tccagtcaca aattctcagc tgtcaattga
      301 aacctagcag tcagatatgg atcgagcatt tttagtactt aaatgaatac atgcaaacta
      361 gtactgtaca tggcaaaatc ttactttccc aacaagtaac tttaacttat tttgagagat
      421 aaatgcctat agacttgtta tgccacttta atatgatcct ctattaataa agcataaaag
      481 agttagtgtg tagcacataa caattagcca ttattagatt acaaactgag ctggaataaa
      541 aggaaatgtt aataatcaat agtgcgatat tttaagaaag gaaataatta tgctgttttt
      601 taagcagtgc tctatat
//
LOCUS       KCLJ01000736             451 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 82822cal ultra-conserved element locus
            uce-7160, sequence.
ACCESSION   KCLJ01000736
VERSION     KCLJ01000736.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 451)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 451)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..451
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="82822cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>451
                     /note="ultra-conserved element locus uce-7160"
BASE COUNT          154 a           78 c           71 g          148 t
ORIGIN      
        1 accttagagt ggcaactgta aaaaagtctt attaaaatta atgcgcagta gtatagatta
       61 aattagaagt caacaggatc tcaatgcatt gcaactggca ttcctgaatt agctgtttct
      121 gttacaacaa gtaaaaatat ttgcagtgaa atatttgcct tttcctacta ttctttgcat
      181 gcagtttgct atagttttaa aatagacaag caaagaaagc aagatttatt tgacctacct
      241 gtaagccttg aaatatgtat ttagcacagc tgttcttttg tgtttaaact catcacaaaa
      301 atgcagcttt aatgtaaccc accattgatc tgcagtaagt ggaaacaaaa tctctcctta
      361 attagtatca tccaatcact tttttacatt tctacagaac acacactgtg aactgtttaa
      421 tggactatta tttagaagag tggcaaagag c
//
LOCUS       KCLJ01000737             701 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 82928cal ultra-conserved element locus
            uce-1639, sequence.
ACCESSION   KCLJ01000737
VERSION     KCLJ01000737.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 701)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 701)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..701
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="82928cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>701
                     /note="ultra-conserved element locus uce-1639"
BASE COUNT          231 a          146 c          118 g          206 t
ORIGIN      
        1 ctctctttga atcctttgct ttgggactcc aagatactgc agtttacttt ggaaacacgg
       61 aagccaaatg agtatagtca tgaggaaaga cttcagttat acaatccatt aaagaaaaca
      121 atagagcttg cagctgagct attaaaaagc gtagagcaat ttttatttca atggctacat
      181 tttatttcct cttctgagtg actgctaaca aagggctgct gaaaggactg gataaaaagt
      241 agacgtcaga tgcaagatcc atgagttaaa caacattatt agatacaatt tcataaaatc
      301 tagttgcctt tctgctacta gaaatcatgt ccttttgtca acttgtggtc acatcagcac
      361 ttctgttgat ataatttgct ccagctgcag agcgtagctg gcctacaaat caagaactag
      421 aatagggaca gtcaggaata actcaatggc ttggataatg tgcaaatcac cacacatctt
      481 gctattcgtg taatttattt tctctcagaa tatttggaac gtgaaaaatt tatctttagc
      541 aaaacagccg atctgacact actgagaaca gaactggctg gctagcatat tgaaacaccc
      601 tcctcccctc acatatcaca cacacataca cactctataa ccatttaagt gggattatca
      661 tatcaaaacc cttcattatc tttcattgaa ttcagaccaa a
//
LOCUS       KCLJ01000738             379 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 83037cal ultra-conserved element locus
            uce-800, sequence.
ACCESSION   KCLJ01000738
VERSION     KCLJ01000738.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 379)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 379)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..379
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="83037cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>379
                     /note="ultra-conserved element locus uce-800"
BASE COUNT           97 a           87 c           73 g          122 t
ORIGIN      
        1 tgcggagccg ggaacgctct ctcctccgtg ggcctctgca tccccgagcc acaaggtggt
       61 ggtatggtgt caagcaacaa aaaggttttg tttaatgagc ttgaactcac aagcctgctc
      121 atctagtgaa ctgtgacttt tcaaatacca acctattaat gtcaaaggca atactgaagg
      181 gaacagttct gtttgattta gacaatgtga agtccactat gctctaatat ctatcaccta
      241 tggggctcca ttcatgccta atgctttatt caagctaaga cctagttttt atatatcaga
      301 ttaatacata tctacagctt tgcacctttc tattttgatt tttttattat cagggctcgc
      361 cggggccatt ttcattccc
//
LOCUS       KCLJ01000739             670 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 83143cal ultra-conserved element locus
            uce-7532, sequence.
ACCESSION   KCLJ01000739
VERSION     KCLJ01000739.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 670)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 670)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..670
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="83143cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>670
                     /note="ultra-conserved element locus uce-7532"
BASE COUNT          210 a          135 c          101 g          224 t
ORIGIN      
        1 ttctctgata actgctccca aaatagcttg atataaaagt aagcaccagg cacaaggctg
       61 tgaaagacaa tattttgctg ccactaacaa gggctgattt ctttgtaagt gtacaatata
      121 gtcaaactga gctttatttc ccaagagacg agatacttca tttatttgtg caacttcctc
      181 agactttata ttcttgtgtg tttcaggact tcagcagttg cctccttgta atatttcagc
      241 ttttaagctg ttttcttgcc tcactgaact cacataagat acatctgaaa gctttagtac
      301 aaatttactt cgaataaagt cttcaattca ttttcatggc accaaaaaga cagctttaat
      361 aactgcaatg acaaataaac tggaaatcat tccaggcctt ttcacttaac tgacaagtag
      421 aacgctctca taatgagccg caggttttac gttttctctt tgaccataat agcttcattt
      481 aagagcgtca gaccctgaca cttcatcatt tatctacatt atttctcatc ttctttcaaa
      541 taaattatgg aatactagac tgagcacata aaaacaaagt gacttgttat ctgtaaacag
      601 caagataaat tgtccagaag ttcctcattt agttcctttt aaatttaagg gcaagttatt
      661 ggatgtacct
//
LOCUS       KCLJ01000740             507 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 83252cal ultra-conserved element locus
            uce-6516, sequence.
ACCESSION   KCLJ01000740
VERSION     KCLJ01000740.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 507)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 507)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..507
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="83252cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>507
                     /note="ultra-conserved element locus uce-6516"
BASE COUNT          165 a           68 c          117 g          157 t
ORIGIN      
        1 ttaccatggc aataagatat tgtatgttaa tattcttaca ggatttgaaa aaattggcat
       61 gtaaaggaac ttggattgat ttaggaagaa gaatttggag ttggagacat tcattcagag
      121 catggaatgc agcactcaca cacgcagcta gaggtgatgg aagatcaatt ggctgggaaa
      181 caacaagaga ttgaagaact aagcagagag atagaagaaa tgagggcagc ctatggtaca
      241 gaaggattgc aacaggtata attaccttat gttgctttct acttgctatt tggttacatg
      301 caaaaatgca gagcctcgct ggaaagagtt cacactaatg gtagctgttc agaatgcgtg
      361 tgtgatatag aagtaaatac atgtaatttc tttaagttat atgccatgtg ttctgttact
      421 tagaatggca tttccattgt gtgtcctttt ctctgtattt tgtgactaaa ttgtctttaa
      481 agtgaattct tcaaattagg aatggaa
//
LOCUS       KCLJ01000741             718 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 83357cal ultra-conserved element locus
            uce-3434, sequence.
ACCESSION   KCLJ01000741
VERSION     KCLJ01000741.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 718)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 718)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..718
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="83357cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>718
                     /note="ultra-conserved element locus uce-3434"
BASE COUNT          229 a          132 c          120 g          237 t
ORIGIN      
        1 aaaaacccag ggcttcctgg atattcttct tttgcctccc ttgtgtcttt actcctactg
       61 cttagcaaag gtgctgactt tatctctcta agctttagtt taaatgtcca acactgctta
      121 ttaatgaaag tagtaggctt ttgtttatta catgtaataa tggtgaatat gactatttaa
      181 tataaatctg acatttaaat tccacttagt tccgagattc agttgatata aacgagtaac
      241 tctttaccct agagtaaaaa ctccctcagt ctgcatttta aagcattgaa gttttcaaag
      301 taatcagttt ttttcagagg aaccaaattg tgaagacatc tgttatgtta ttaatttcac
      361 ataaatctta agctcctcaa ggcctgaaat gaggcttcat tcaagccgaa ttaatgaaac
      421 atgattgtaa gtcccttgca tggaaatgct gtcatacagt attgagttgc ttataatcac
      481 tgagtaatct tgcaggctgc caagggagag ctactttaaa tccctccata aaacaatatc
      541 tgaaaatatc agaacactaa ctatatcctg gaagattaat agcagatgaa aatttctatg
      601 aaatgaatca ttctttctca gtaaaggata caaacatttc cagtaactgc agattgtata
      661 atgtggagca caatccatga tccagatgcg aggtgcgttt aagctctgag attcgttc
//
LOCUS       KCLJ01000742             540 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 83463cal ultra-conserved element locus
            uce-441, sequence.
ACCESSION   KCLJ01000742
VERSION     KCLJ01000742.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 540)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 540)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..540
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="83463cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>540
                     /note="ultra-conserved element locus uce-441"
BASE COUNT          177 a           96 c           97 g          170 t
ORIGIN      
        1 gatattttcc acttgagtgc ttctgtcctt atgttcttca gggaatatgc attttagaac
       61 ataatacctt tatgtaatgt atgcatgcaa actaaggtgt ttcaaatgca tgagctatac
      121 catgatctag aggatatcta ggaggcctgt catacttcta ttacttcagg taaataactg
      181 attgaccttt gtggtgtgct gatacttcac taatcagaac ctgaaatctg tataacaaca
      241 cttcatttac ttgatagaca aaagaacaat tgcacttgaa gtaatgtgat ttctaaatag
      301 acactgcctg tcaaaaataa atgcattaga agtaaaatgt agctcaagga gacaattagc
      361 aaacagaggt gacactgtaa acaggtgcac ccattattcc caaagcttgt ggcaatatat
      421 tcacatcttt tagactgatg gaagatcatg tgacagtttg gtgaattatc tatctgtatc
      481 atctgactga tgaagcctgc tgcagttgca gatcatttaa aaatgcatct cacaaattac
//
LOCUS       KCLJ01000743             426 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 83571cal ultra-conserved element locus
            uce-5756, sequence.
ACCESSION   KCLJ01000743
VERSION     KCLJ01000743.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 426)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 426)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..426
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="83571cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>426
                     /note="ultra-conserved element locus uce-5756"
BASE COUNT          147 a           75 c           66 g          138 t
ORIGIN      
        1 cacatttgaa ggctacagat agcagaacac accatttacg gctttgtata tacacataca
       61 ttctatataa tataggtaga tagattcaat gatttaaaca cacatctata ctgtgtgttt
      121 caagaacatt cagatattta cactgttaga tcaccactca ttttagactc actctagtgc
      181 cagctgccag gtatacaaat caaaatatgt tacctttgtt caaacaatac tgctgttcat
      241 tatataatag aaactgtcat gcttaatctt ccaggaacca agaactggta cattcttgga
      301 tcagaggtgg cttgaaatgg tttgaggcaa aactgtaagt aaatcttgtt gataaactaa
      361 gtgcattgat gatttttagc atcatctgat ctattactaa actaaaaatg ctggaatatt
      421 ttcaaa
//
LOCUS       KCLJ01000744             294 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 83678cal ultra-conserved element locus
            uce-3156, sequence.
ACCESSION   KCLJ01000744
VERSION     KCLJ01000744.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 294)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 294)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..294
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="83678cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>294
                     /note="ultra-conserved element locus uce-3156"
BASE COUNT           95 a           52 c           50 g           97 t
ORIGIN      
        1 tttttttgct aatattttac tgttacatct gacaggattt cacattttct gtagcccgcc
       61 tttagtacgt tgaactgcca gacagagaaa ttaataccct gagtgactgt attttaatta
      121 agcaatttca tgcaaattac aaattttaga ttgccaaata atatattgca caaaaattgt
      181 aggctggctg atctgatatg catggagtat tactcttcca ggcgctgtgc atacatggga
      241 aaatgaacaa aaatgctaat ttccaatcta ctatgcaaac ggtaaaagat gcct
//
LOCUS       KCLJ01000745             365 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 83778cal ultra-conserved element locus
            uce-4670, sequence.
ACCESSION   KCLJ01000745
VERSION     KCLJ01000745.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 365)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 365)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..365
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="83778cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>365
                     /note="ultra-conserved element locus uce-4670"
BASE COUNT          154 a           72 c           42 g           97 t
ORIGIN      
        1 acagtaaaac tacactaaaa gtcatttaac aatatttata acaccataaa atacagtgtt
       61 aaaatatatg aactgcaata tgtaccaaaa ttataaaatt tgtttctcat catcagtgat
      121 taaaaccagg atcattgctc tagcttcaat actcacaacc ctggtgacag attagaattc
      181 aaatcttaat gatcaattta caattaacaa gatagaagtg aaacaaatta aaccaaccat
      241 tatatataac gagacccaat ggactcccat tgttcccctt aattacaaaa cgcaaatcac
      301 aaatacacag tgggtagtgt caagcattaa tctacaacct agaaactcag acagtgacaa
      361 tcaga
//
LOCUS       KCLJ01000746             516 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 83881cal ultra-conserved element locus
            uce-6212, sequence.
ACCESSION   KCLJ01000746
VERSION     KCLJ01000746.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 516)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 516)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..516
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="83881cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>516
                     /note="ultra-conserved element locus uce-6212"
BASE COUNT          193 a           85 c           79 g          159 t
ORIGIN      
        1 aacattcact tgcattattg aacattttta gctttattat tataatagaa ttacagtctg
       61 acataaaata aagagctttt gctaaactct gtaaagcaat acatgcttct gccataaaca
      121 acctctatta gatttaggtt ttattgccac atcactgcac tgaggtgcaa taaacattca
      181 atgtcatctt tttaaaatta tctcaggagt aaacagaaac tgtcctctat aagagtgtat
      241 cattattttc aaggaagact tactattatt acatggttta gcaaagcatt gtaaaaaagc
      301 tacatagaga ataccttgtc tttgataaac tgtgcagtca agtttataca gtataatact
      361 attggcatag actaactaag aggtgatata atgcaatcat tgcatagcaa aaagcagact
      421 aggtaagtac atctaatgtg caaaatgcag accaaaaggt agctatgaat tgctagaaag
      481 ataaaatgcc ctaaatgaac acactagttt aacgcc
//
LOCUS       KCLJ01000747             612 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 83992cal ultra-conserved element locus
            uce-1600, sequence.
ACCESSION   KCLJ01000747
VERSION     KCLJ01000747.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 612)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 612)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..612
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="83992cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>612
                     /note="ultra-conserved element locus uce-1600"
BASE COUNT          206 a          121 c           99 g          186 t
ORIGIN      
        1 ctccctgcat gcttctacca cggtggcaaa cttatttcaa aaattctgat gaaacgcttt
       61 gtaaattttg ttattctgtg atgataataa atcattatag ccttaaacac tcctctagct
      121 tggagcctca gtcacaaatt atcttgtcat tctgaccaaa acattctcca aaaaagcttg
      181 acaagtgcta aaacccagaa catgaaacca tgtgttgttg tgaaagcaag attcagaaat
      241 gtcaattaat tagattaaga ggctactttt agctttactt gtgttgccaa ataaccctta
      301 aaatatgcat agcagtggaa gtctacctca gcaatacagt acttctgtgc aaaataaaga
      361 caatggatct ggctaataga gggaattatt gtatctgtca ttcagacaag gagaatgatc
      421 tagaagcaaa tgccttgcta ctctttccac tgtatggatt cacaagcaag ataaattctg
      481 ccacttagga gtttaagcac aattttttga aatctgattc agattagaaa ataaaagtca
      541 aatcactatt atacatctcc ataagtaaaa tggataacat cactgtctgt gtagctgtct
      601 ccccctgccc at
//
LOCUS       KCLJ01000748             670 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 84102cal ultra-conserved element locus
            uce-449, sequence.
ACCESSION   KCLJ01000748
VERSION     KCLJ01000748.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 670)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 670)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..670
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="84102cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>670
                     /note="ultra-conserved element locus uce-449"
BASE COUNT          180 a          117 c          134 g          239 t
ORIGIN      
        1 tttttcagtg ggtctagggg agaaaaggtc ctttattctt tagtaacttt tctgatttta
       61 aatatatgct tgtctggtca tgaggagcaa ggtcattcct actgctcagg gcctaggctt
      121 tgtgctggtg ttggtgggag cttctctcct ctctcctttt cctccctccc tctatctctc
      181 cttttctttt tctcctgagg tgcagatggc cacatttgca ggttaactgg aacagctgga
      241 ggcacattat tagcttcctg ctgctaactc atatttgctt agattttttt taacagcaac
      301 ataatttaca agtggtaggc cagtgacaaa gctggcatgt tctaaatccg catctgattt
      361 atataatgct gttgcttatc agtgaatgaa gtcataatta ttgctttgta ccattaaata
      421 gcataaatat ataaactgtt acacaaattg cagcaaatgt ttcctctagg gagctctaga
      481 caaaatttta atgtagtgca tttgtctgtg gtggcagttt ctatggtata taataatgtt
      541 gataaatttt actgtagcaa gtgacatttt ataacattaa tcctggtggt aaaaatctga
      601 tgaatactac agctgtaatg gtaggtacaa gaagaaagag agcttttgac accaagtgaa
      661 ttgattttaa
//
LOCUS       KCLJ01000749             461 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 84211cal ultra-conserved element locus
            uce-7496, sequence.
ACCESSION   KCLJ01000749
VERSION     KCLJ01000749.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 461)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 461)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..461
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="84211cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>461
                     /note="ultra-conserved element locus uce-7496"
BASE COUNT          143 a           67 c           84 g          167 t
ORIGIN      
        1 cagggtcagg ttctgtattt gatgaaaata aatcaattat atgccggagt taatttggga
       61 ttaattagag tcagttatat aataaattat tcttgtacat aggtggagaa ctcaggggat
      121 ccatgggaaa atttccaaaa taatcaaccg ctaacatact gggaatgtgt ttatttgctg
      181 atggttacaa tgtccaccgt tggctatgga gatgtttatg caaaaacaac ccttggtcgc
      241 cttttcatgg tcttcttcat ccttggggga ttggttcttc tttatgttca aaacttgatc
      301 ctctatatct caatgttgta attaagctaa aattaattat aaaacattaa aatatgttta
      361 attttgtcct gtagataaat attttggcag agcttgtcaa attagtcttt ttcaaatcca
      421 tttaaatgat taatgcatgt gaatacatga agtgcctcaa t
//
LOCUS       KCLJ01000750             639 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 84315cal ultra-conserved element locus
            uce-7605, sequence.
ACCESSION   KCLJ01000750
VERSION     KCLJ01000750.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 639)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 639)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..639
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="84315cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>639
                     /note="ultra-conserved element locus uce-7605"
BASE COUNT          231 a          123 c           98 g          187 t
ORIGIN      
        1 gcatcctcgt ccaggcagct gcagtcccag ttactgactt ctctggctca caccaacagc
       61 atcttctccc ctacactgag aggaagatgt gacttctgca gtgtcaaaca cactctgaca
      121 gctgtcagct cccatgacac agtgcatgtt aaataactca agtaaaactc aagtaaaaat
      181 ccattttaac tttgctgtat ttatatacta tataaatttt acatgctata tatttacagt
      241 ggggcaagtg ctttttatct ttaaaaaaac aaagatcaaa catctctgaa caacacagct
      301 tgtataaacc agacagatta ttcagatgaa ctgtatttaa tacaggttcc ccactcatct
      361 cctgatgcag gaccagtgaa taataagtgc atcacagttt gatagcattt aataataaaa
      421 ataaaaatca cagtatgaat ttgtctgtaa aaaacagaca actgagactt aagacaaatg
      481 acagtatatt aagaaaatgt aatatggaac aatatacaaa tagtcttgag agatacattc
      541 agaactgcat atttgttgtt tcacaatgtc gaaaaccaga agattttctt cagatcttga
      601 atataactca aatgtgaagt aaattagttt ctagtgtca
//
LOCUS       KCLJ01000751             603 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 84416cal ultra-conserved element locus
            uce-1618, sequence.
ACCESSION   KCLJ01000751
VERSION     KCLJ01000751.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 603)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 603)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..603
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="84416cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>603
                     /note="ultra-conserved element locus uce-1618"
BASE COUNT          190 a          105 c          111 g          197 t
ORIGIN      
        1 aatccaacat ttgcagttaa tattactata ttaacaaaaa ataaagggtt tgggttcctc
       61 acactgacct gctctcctac ttaagtgttt ttggagagca attatgatct aaagaaacat
      121 tttgttctgt cttttattca cagtgaaaca tgcctgaatt ttacagatct ccactaaaaa
      181 aaagttttgt gaatagttgg tgaaagaagc ctaaggaaaa tgtgtaccta atcctattaa
      241 ctgacttaat ttagaattat taaaaacctt gatacacagg atttaacaca atctttctag
      301 cagggtgtga tgtaatctat ttttgttcct cagctagcag atggcttacc tttaagtaat
      361 ttccaatatg ttaggagatc aaaagccatc cttatgccac ggaggcagta atcgtttctc
      421 tctgctgggg gttgcttggt actgtggata tgcaaaagct gctggcattt ccaagcatag
      481 aaggccgaca tttcttcaga ctttgaagtt aataatcctt cagaagttga aaaactgaga
      541 gaccctttta atgttctata tgccatgtgc taaagtaaat atctgtaagt aatcacagtg
      601 ggc
//
LOCUS       KCLJ01000752             720 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 84524cal ultra-conserved element locus
            uce-1878, sequence.
ACCESSION   KCLJ01000752
VERSION     KCLJ01000752.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 720)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 720)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..720
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="84524cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>720
                     /note="ultra-conserved element locus uce-1878"
BASE COUNT          211 a          166 c          159 g          184 t
ORIGIN      
        1 cactggagct agctttagag gaagagagtc cctgccaagc tggaaagcag tcatgaagtt
       61 acttgagaaa taaggcccta cagtgggact ggttgtgtag ctaatccatt agtcttttca
      121 aaaggacttt gctctacgcc cttatggcta aattgaccca acaacctatc aatgctttta
      181 tttgctgagt ggctgtccat gaaaggtctc cgtgctggat ccaagctgta atcaaagcct
      241 ccatcagtac cagggccctg atgacacaaa tggccaaact ttcaacgagg ctggctggtt
      301 tccagccacg ccattttaaa gatacaaaga ggctgtgttg tgctgtggaa ttcattttct
      361 tgtttacttc ctacagaaac aagagcataa tcagcactca gtgcatcgga tcagaccgct
      421 gagttgttga cagaagcttg gagaggcttg ccagctttcc acatgaaaca ctggctttct
      481 tctaatacac cccccaccgt ctgtggccct gccaattgta gcacatcaga gcaaccattg
      541 agataatgac cgtgaagtct catgatacac tttgatgaag tgtaacattt ttttttgtct
      601 gtgccaaaat gatagagaca gctgactaaa aatcacccca tcaaaatcaa ggctgatgaa
      661 cagcaggcaa agacatgtgc ttccacagag aaaagggagg agaatttaca gccaaagact
//
LOCUS       KCLJ01000753             725 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 84634cal ultra-conserved element locus
            uce-2431, sequence.
ACCESSION   KCLJ01000753
VERSION     KCLJ01000753.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 725)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 725)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..725
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="84634cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>725
                     /note="ultra-conserved element locus uce-2431"
BASE COUNT          240 a          134 c          144 g          207 t
ORIGIN      
        1 agacactgga ttcctttata tcctgggaaa aggaacaatg gaacaaatgg gccctgcccc
       61 ttcacagaac atctggctga catgtagctt ggtaaaagag tgtaaatgat ttaaagaaag
      121 gctaagcaga aacgtacatc aagtgccatt attttatcac ccactttaat cacaggctgc
      181 tgttcaggat ggtttgggat gttgattgtt acagaagaga tttctgtacc attattagta
      241 cctctgaaca aatgcagtga gcatgggaaa aaaagacagg agagtgagag tgagaaggaa
      301 aatgtagcag cggttaaagc atagtttaat aactccaatc tcagtcactt ttttcatatg
      361 cattgtatgt gcaagtccat agtacagcat aatgtgtcat aatttggcct ccaattctga
      421 cagcactgct tgacttgggc attaaatcat tgccccgagg aattcacatt ctggcaattc
      481 ctgatggtag ggctgtcatc tcctcccaca catgacctat catttttgac atgattgaat
      541 caaaattagt cagtacattt agatgtaaat tagagacatc caagaataat aatgagcaca
      601 aaaatatagc tctgtgtaat tgacacggca acagcttagt acagtcttcc acagtgtcct
      661 cgaaattatt aatatcatga taacagaagt actgtatcaa aaaagtgaga aaacttttcc
      721 ttttt
//
LOCUS       KCLJ01000754             594 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 84743cal ultra-conserved element locus
            uce-7782, sequence.
ACCESSION   KCLJ01000754
VERSION     KCLJ01000754.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 594)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 594)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..594
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="84743cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>594
                     /note="ultra-conserved element locus uce-7782"
BASE COUNT          206 a          115 c           93 g          180 t
ORIGIN      
        1 aataataatg ctactttcta aaaagacaag acacaaagca cactcacaca taatggtaaa
       61 ctgaatttat ttccttttgg aaaacaattc cagtaatctc caggttcaga ccgcagagta
      121 aacattaata acagtaacat acaggttagt tcaactgatt caagaatttg gccatgtgaa
      181 atcattaagg aaagtcttga acactcaaag cttcaaatgg tatccaggaa aaaaaattct
      241 ttgacaaact acataacaac tattgcatat atggtaatgc tatctgtcat atcgcaaggc
      301 ttacaaatat atatacgggc cttattcaac tgtgggttcc tgctctgtga gaaaagtctc
      361 ttcatatttt ttgcaagaat cttcagcaat aaaaaatagt cttagattca tccgtttgta
      421 taccaaaaga gagatttctg gactgaagtt taaatgaaag ggaggccaaa cagagctgca
      481 atggaacata gctattactt tctccctcct ccttgctcct cacacagtat tattattatt
      541 tgtatctttc ctgaataggg cccaagtcca cttgtcttta taagaccatt ttag
//
LOCUS       KCLJ01000755             847 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 84852cal ultra-conserved element locus
            uce-1611, sequence.
ACCESSION   KCLJ01000755
VERSION     KCLJ01000755.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 847)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 847)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..847
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="84852cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>847
                     /note="ultra-conserved element locus uce-1611"
BASE COUNT          289 a          155 c          125 g          278 t
ORIGIN      
        1 attttagagc aaatactgct accaaaagcg ctgccagagt ctgcattgca caactccagg
       61 cagcatcttt tacaaaacaa ttatattttt tctagatgta gtgaaagcct tgaaaaaagt
      121 ttacttgatg tctaaccaag caatgctgca tcttcagatt tgaaggagag ctcagaaagt
      181 tagtttttta ttattcttca tttaagtatt attttttaat tgcagcgtat taaacataaa
      241 atctggtaca atctttaaaa ataaatagga cctaactata aatgggccct gttgtgtttt
      301 tatctttgac aagcaagtaa ttgcttctca aatttatcag tttgtttatg caaaaaccat
      361 ttaccaagcc tagctcaaaa gcatcaattt catcattatc atcttattaa tttagccaag
      421 ctataacaca gctgattatt cctgagtaat atcctctgca gcacatcatg tgtggcaaaa
      481 ccatctgtac agtacctatt taataaataa accctcggct aaatgtctct gtttattgag
      541 aactaatgtt tatagaaaat ataatggaac tcaataaata actcagcttc atcaacctgc
      601 atatgaatca gtatgaagaa cgctgacatc atcacctttc aagtaccaga gaaagcaaaa
      661 ttacccaaaa gagctataga gtcaatatta aggcattaaa actgcaatga aggcatatta
      721 atgcttaaaa cttcattgtt ggcagtagaa ttgccaccac ggacatattt tataactcta
      781 agaatactta ggctttatga ctgtttcttt gttgagtgcc ttgcacttaa tgtagttttc
      841 cacttta
//
LOCUS       KCLJ01000756             786 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 84957cal ultra-conserved element locus
            uce-7864, sequence.
ACCESSION   KCLJ01000756
VERSION     KCLJ01000756.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 786)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 786)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..786
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="84957cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>786
                     /note="ultra-conserved element locus uce-7864"
BASE COUNT          256 a          128 c          193 g          209 t
ORIGIN      
        1 gggattttaa aatcccatgc cctttgagaa atttccaaaa taaatgaaat gttttattaa
       61 ttctaacagc ttaatgtaca gaactaatag aggtgtagtc cattttgtct tctcccataa
      121 tgcattaatt tctttataca gacagattgc acggctatgt ttgtatgaca ccactcagat
      181 caattctaag acctctgaac taaagaaaat aatctttcta aatggaatac taattttagc
      241 taagctgctt ttgaagacta tgctcttttc caaagctcca tacaaaaggt agggagaaga
      301 gggagagtgt agctgatgaa atgcaaatga ggcttttctc agacagctgg ctgctttggg
      361 atgacatgtg tgatgaatgg ctcttaaaac atgagcaggc atcaagctcc aattcagtgt
      421 cagactggca aaaacagcag cattactgga tgcttccttt aattaatgca acacttctgc
      481 attagtccgg acagtgccga taaatgggga agaactgata tcagtggtaa tatcagaaat
      541 ccttcaacct tgaagctggg atgcattagc caaaagctgc ggtatcgtaa aaggtttaat
      601 tgtatttgta atgtaccagt gcaccatgac aaaaatggga gatagtgtag gcaggacagg
      661 gtgagccggt gataaatgag tgtgagtgag cgattgtaaa gcagggagga gtgtggaaac
      721 agacaataga cagcagaggg gaagggggga atgggggact ctgacgtgga aagcaggtaa
      781 tgagag
//
LOCUS       KCLJ01000757             581 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 85071cal ultra-conserved element locus
            uce-2416, sequence.
ACCESSION   KCLJ01000757
VERSION     KCLJ01000757.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 581)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 581)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..581
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="85071cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>581
                     /note="ultra-conserved element locus uce-2416"
BASE COUNT          187 a           95 c          121 g          178 t
ORIGIN      
        1 caacagaaat gtgttccttt cagttctaag aatggtgcag taaaggaaaa gctcttccgg
       61 gggagttttt ggaaccttcc cccacaccag gaattcactg agggaataaa gctgagcaat
      121 gcacaaacct gaaagtcaca gacattcagg ttcatctgtt tagtcctgtc ctgacagaaa
      181 tcattacgag tttgatagat ttatttataa agacttgctt caatatttaa agtacatcta
      241 ttccaacatt cctcatttca agctcggctg tggatcaaga tgaaagaaaa attaaattgt
      301 atattgaaga gctgttaatt gaactgcact gcatttagca agggagcatc agcttcaggc
      361 agtcaatact acagagaatt tttaatgtac tgtatcacta gattgtcagt ttgtattgga
      421 gaatgcaaac agactgcttc gactgatgat aaagccctgg aaacttctaa gttgttgagg
      481 ggagaaaatg ttattttgct ttgatatatt gtgacaaagt tgttgatggt agcaggaaca
      541 acaggtgaat attatttgaa tatcaaattc tgactttagt g
//
LOCUS       KCLJ01000758             701 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 85181cal ultra-conserved element locus
            uce-2312, sequence.
ACCESSION   KCLJ01000758
VERSION     KCLJ01000758.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 701)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 701)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..701
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="85181cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>701
                     /note="ultra-conserved element locus uce-2312"
BASE COUNT          227 a          128 c          125 g          221 t
ORIGIN      
        1 tccgttagta caagtcactg ccatttctat aacaaagtaa tgaaggcaca gctagtgcaa
       61 gcagacttaa acccgttcag actactgggc tgaaaaaata ctttggttgg ttcttcagga
      121 gagagttttc tctaaacaaa tattggtctc agttaacagt tctgatcatc ttcacagctg
      181 cagtctaata gctacatgac aaagacttca caagaaccaa actatgtagc aatgaattaa
      241 cattcatgct ttagggcatt tactgcattc tacatattgg cagaaaatta tactgttaaa
      301 atgctaggta gattgaacct acattttaaa ctggttctta agtgttcgat ttttttaaca
      361 aattggttac ttaattctac caagatacaa aacataaggc tgtaagtaac taatagttgt
      421 gtttaggcta ttacagtgca ggtaatccta gacacactgc ttcactgctg cttgcattct
      481 gctgggtttt gatccttctg ttgggaaata cagtttagag aaacagtatt aagaagaact
      541 atcaatattg ctaagcatgc ttatcccttg cattaattgt ctaggcaaca ctactgcagc
      601 aatattttat tttggctttg ttggcacatc aggatacaat ccagaataaa aacctgttca
      661 gaactaagtg tggtaaagta ctctaaaaga cactgtaact g
//
LOCUS       KCLJ01000759             751 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 85294cal ultra-conserved element locus
            uce-6706, sequence.
ACCESSION   KCLJ01000759
VERSION     KCLJ01000759.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 751)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 751)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..751
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="85294cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>751
                     /note="ultra-conserved element locus uce-6706"
BASE COUNT          232 a          128 c          148 g          243 t
ORIGIN      
        1 atacagaaat aaaaccaact caaattaaaa tgtcaagaat gtaaaaactt aacatgggat
       61 caacaagtct tctggtgccc atttcagatg gaacctgttg cataattcca ttcttgagct
      121 tttcctaaag cacttgggag cagaagtgta ttttgataag taggatggga ctttggctaa
      181 tcagttcttt gccactgcaa agtgctttca tagcctgcag catctgcctt ccaaactttg
      241 cttgctggta gattgttctg cagtttgttt agcaacagca ttctctaatt ctaatgtatg
      301 aaaaattgat gatgaacttc ttacctcctt taggcacata gagatgaaat ccagcgtaaa
      361 tttgaagccc ttcgtaatag ctgcacagtg agtattaaat acagatcatt gaattatttt
      421 gaaattaagg ataatgaaac aaacaatttc ctcatttaat ccttgatgac actagttcat
      481 aatgtggact tctggcttca aggtgctagt aggagctgga tggattggat tggatttctt
      541 ttaggtttca gcaattttga ggttttagtc tgatcatgaa attgtcactg ttcttctttt
      601 tggagaagaa agtaaattaa aatatctcat tgcagtgcag ctaataagaa tggtgcagca
      661 gctgaaaatg actgtagatg aaggtctttt ctgctcacaa gaagaaaaga tctacctgtc
      721 caaattctga gctacattgt agatctaggc c
//
LOCUS       KCLJ01000760             514 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 85405cal ultra-conserved element locus
            uce-4721, sequence.
ACCESSION   KCLJ01000760
VERSION     KCLJ01000760.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 514)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 514)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..514
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="85405cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>514
                     /note="ultra-conserved element locus uce-4721"
BASE COUNT          131 a          127 c          122 g          134 t
ORIGIN      
        1 tccctgcaga ggagtacgtc acctgccaca cgtgccgctc cccggacacc atcctgcaga
       61 aggacacgcg gttatacttc ctgcagtgcg agacctgcca ctcccgctgc tccgtggcca
      121 gcatcaaaac cggcttccag gctgtcacag gcaagagagc acagctccgt gccaaagcta
      181 actagctttg ctaaccaacg ctgcagaaag tgttctgggg atttgccacc cgagtggatt
      241 ttaaagcgag gttgtaaaaa ccgcattggt ctgtgaaatc cttgcaagat gcagatcctc
      301 aagctgttca catacatttg ctcattgaat atattttacc aactgtaagg agcgtggtgg
      361 gaaaggaggt gctttttaat ccgttcagac ttctgtaaaa gatgagataa attaaagata
      421 ctataacagt gagtgtcttt ggatttttcc ttcagtttcc tcaatggttg gtgtgttgtt
      481 ctgcagatca tgtcactgtg tccaagaccc agaa
//
LOCUS       KCLJ01000761             631 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 85506cal ultra-conserved element locus
            uce-454, sequence.
ACCESSION   KCLJ01000761
VERSION     KCLJ01000761.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 631)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 631)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..631
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="85506cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>631
                     /note="ultra-conserved element locus uce-454"
BASE COUNT          212 a          109 c          116 g          194 t
ORIGIN      
        1 tgccaaatta aagcaggaat tcataatagg gtgcaaaata aggataaaag aatgaaaaga
       61 gaatgaatgc ttcttagctt ggtatttctt taatttcacg taaatttcac taagtaaata
      121 cgccttaaaa gtgaataaaa ttttatttca ctttaacaag agagtataaa agttaaaaag
      181 gtcactgtag taatagacta atctcaatta ccagggcagc cggtgaaacc cacaactccc
      241 acctaatctc attcggtgca cacgcagtgc accgtttgat ttccaacacg gctaaatgaa
      301 attataaagc agtgttaaat ttattaatca tttaattagc taaatgttcc tgcaactact
      361 cgtgagatga atggcatgtc attttctaat gcaatttgcc tctcagccag gcagggtcag
      421 gagggaagct actggcatct taaatgatct tttttatatt gcaccttcta ttaagggaca
      481 gtgtgatatc gctgattata tttgagtctt gtacacaagg ccagggagtt ttcttgttat
      541 aataacaggt tatatttaaa ccaaaataaa gatggtaaga tctgaggagc caacaattaa
      601 cccatctgtg gctgtatttc tcactttggc t
//
LOCUS       KCLJ01000762             607 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 85616cal ultra-conserved element locus
            uce-4527, sequence.
ACCESSION   KCLJ01000762
VERSION     KCLJ01000762.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 607)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 607)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..607
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="85616cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>607
                     /note="ultra-conserved element locus uce-4527"
BASE COUNT          130 a          170 c          122 g          185 t
ORIGIN      
        1 ttccctaaaa cgtgctgggc ctctttcctt ccacctttaa gaaaggagaa aaccttagtg
       61 gggatggcca catgatagct ctgcaaaaaa tccttccttt cctgtgaata cgacaaagtt
      121 acaaaagcag taccttaatc ctgtttctct ctttcttctc ccttcactcc atgcccctgt
      181 cattcatttt ttactcatcc tccctcctgt gtctccatgg gactctggtt tgtgctgtgg
      241 gctcctggca cgcacacagc tcaccctttc tttctccaat caggatggcg gcctagtgga
      301 agagcccact acttcaccat ttttgccttc accaagcctg aagctccccc tttcaaacag
      361 tgcactccct aatcagaccc tgggcgggat tgcctcaggg ctgggcatgc aaaacttgaa
      421 ttcttctaga caggtaaggc tgttggggaa gatcccaatt tggctctctt ggagtagctg
      481 cagctttgtt catgtgaatt tcaccttaca ggacattgta gttaacctgc atccatctag
      541 aagagatgtg gatttacacc cctgaaccct ggtgtggctc tgccttcatt tttttttgag
      601 gcattgc
//
LOCUS       KCLJ01000763             718 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 85724cal ultra-conserved element locus
            uce-6718, sequence.
ACCESSION   KCLJ01000763
VERSION     KCLJ01000763.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 718)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 718)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..718
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="85724cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>718
                     /note="ultra-conserved element locus uce-6718"
BASE COUNT          211 a          136 c          147 g          224 t
ORIGIN      
        1 agcttttaaa aatattgcag ctgcagctga gcgggagcgg ggggaacaat catcccttta
       61 tccacggcgc aggttcccgg taattcaggg gaggcaaata cgatgcgatc aataaagcag
      121 ctccgtgcct tccacactca cggcctcctc atgaatctta accaagagaa ataataataa
      181 gtgacagaga aggtttctgg tactttaaat aagcaagcga gccttccaaa gctacgagca
      241 acattctctg gatatcaaaa ataataactg gttgtgcagc agtgcagcat ggaaacacaa
      301 gggtataaga tatactgtac tttaagctct gtttgatgaa tctgagcaca gttcctgggg
      361 gatagattac tttaaaccat gctcttttac tttctaatcc tgacttgatt tgatttgtac
      421 tttaatacag ctgcctggca attcaacagc aaatagagac tatttatgta atcatattgt
      481 aagtagtggg acaagaagaa actctctaga acctttttgg aaaatagttt gttgtacttt
      541 tttatttatt gaacagcagg gcttcgggct tttcagtgct cattataatt ggttttctgc
      601 ttgaactttc aaaaactgtc atgtcaatac tcaaacagaa tttttttgct tactatatgg
      661 ctgtgggctc tattttctca tgtgctactt ggcaaagttc ttgtaatatc ttagaggc
//
LOCUS       KCLJ01000764             458 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 85939cal ultra-conserved element locus
            uce-6970, sequence.
ACCESSION   KCLJ01000764
VERSION     KCLJ01000764.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 458)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 458)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..458
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="85939cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>458
                     /note="ultra-conserved element locus uce-6970"
BASE COUNT          137 a          101 c          100 g          120 t
ORIGIN      
        1 agcagctgca ggtggtatta aatcccattg gtctcagtgg attgcagtct aagctgttac
       61 tgtaggccag ggcattaaag cctagctctt agagtgaggc actgttcatt ctgtttgttt
      121 tctctcagtt atttagaaga gcttcatatt tttcagcttg tagcactcct ccagtcaaca
      181 tgaaagtgca gcctgtgaac aggacagcac tactggtaac ctggaaccaa ccagaaacca
      241 tttaccaccc tccaatcatg aactacatga tctcctacag ctggactaaa aatgaagatg
      301 aaaaggagaa gactttcacc aaggatagtg acaaggacct ggtaaaagca cagcatcgac
      361 cccagacata tgtatcaagc cacccttttt tcttggtaga agggggtaga ggaggaaagc
      421 ttaccttaca ggcccatgat gaattgctat ttaaatgt
//
LOCUS       KCLJ01000765             761 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 86047cal ultra-conserved element locus
            uce-3139, sequence.
ACCESSION   KCLJ01000765
VERSION     KCLJ01000765.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 761)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 761)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..761
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="86047cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>761
                     /note="ultra-conserved element locus uce-3139"
BASE COUNT          205 a          137 c          183 g          236 t
ORIGIN      
        1 aattatttgg tagagtttga actgtgtgtt tgtgttcatt attgcaatgc aacaatgctg
       61 gtaacagtat ttctgtcttt ccatttaggt ctggatagat gcagggacac aaatcttctt
      121 ctcatatgca atctgcttag gagcaatgac ttccctgggg agctacaaca agtacaaata
      181 caactgctat aggcaagttt ccatctaagg gggtttagtg ttttagctaa atgatgtaaa
      241 taaagtaggg acaatgggtt aatttttttt taattaactt gctccatgac atatgtgtga
      301 cttagggact gtttgctgct gggatgcctg aacagtggta ccagttttgt gtctggcttc
      361 gcaatttttt ccgtcctggg cttcatggca caagagcaag gggtgaacat tgctgatgtg
      421 gcagagtcag gtacgatggt gttggtggca gtggtggtgg gcactgccgc ccagcgtgtg
      481 agcaaagttc tgcagaccca atcagctaac atctaagtga taaaacagaa caaggtttcc
      541 cataattgcc agaaaataag cacgttgtct agagcagtga gggttagctg gggttgtacg
      601 tcttgattaa cagggcagca aacacatttc ctggagtgtg ctaatccatt tgagttgaga
      661 ttagagctaa gaaaccatta tccagagtcc agaatgccat tgattcaaga atttattcca
      721 tccttctttt cagactacct ttattttcat tcaagtgcaa a
//
LOCUS       KCLJ01000766             514 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 86155cal ultra-conserved element locus
            uce-344, sequence.
ACCESSION   KCLJ01000766
VERSION     KCLJ01000766.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 514)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 514)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..514
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="86155cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>514
                     /note="ultra-conserved element locus uce-344"
BASE COUNT          163 a           84 c           86 g          181 t
ORIGIN      
        1 tgttgctaac cattctttaa ataaaaatac aacatgattc taatatgcca aggagctcca
       61 cggataacca tataatttca aaatgatact gattttgttt atatgcaaca taatctttta
      121 cagttcttag tctttatttg aagcattgca aagtggattt ttatgaaagg tattataaag
      181 gactccttgt tttttcataa cagatttgaa cattaactga tcagagttca gataaatagt
      241 ctttactctc cattaaaata ttaaaaagcc tttggaagga aactggcgta aagatccttc
      301 attcttgttt aatgaacact tgttggcaag tataacactt taatagcttt gcagaatgaa
      361 ttttgtgtgt gcatcctcca tttcactgtc agacacttgt ccaggtgctg ggaatttatt
      421 ggggcaagca tatttttact cattagttct gtatttgatt acagaacagt aaaatatgag
      481 ccactaagtc cccgaggcat agctgtgtac attg
//
LOCUS       KCLJ01000767             530 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 86261cal ultra-conserved element locus
            uce-6871, sequence.
ACCESSION   KCLJ01000767
VERSION     KCLJ01000767.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 530)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 530)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..530
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="86261cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>530
                     /note="ultra-conserved element locus uce-6871"
BASE COUNT          134 a          130 c          140 g          126 t
ORIGIN      
        1 ctaggttgtt tctgctttcc tcctcctcct ttctctgctc cccaacccat gtgtaaaagt
       61 agcagggggg cctttattaa aggcaaagcc ccacggcagc agcttcccag ccaaactgct
      121 cttgtattac tttttgatga gttttcaatt taggcctttg cagacagggg gaagaaggcg
      181 acttgagaga cagagggggg aaaaaaatgc aacagatggg gccgattgtg ctctctaggc
      241 aaattaagga agacatctgt agctcccaaa tactggtggt ctaaagcaat tagtcccctg
      301 tgaaaagggg cctctctgag cctcctccag ccaatccgcg ccccggcagc actcacgtta
      361 caatggcctt gaccacaatt cactgagcca aaaaaaagaa agattaatcc aggaggagct
      421 gtgcggccag gctggagttg ctaggcttaa aagggaaggc gtttctgcct gggtttgggg
      481 cagaaaagca gggcgtttta tgctgctttc tgacggtcac ccatggcgta
//
LOCUS       KCLJ01000768             737 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 86370cal ultra-conserved element locus
            uce-3520, sequence.
ACCESSION   KCLJ01000768
VERSION     KCLJ01000768.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 737)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 737)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..737
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="86370cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>737
                     /note="ultra-conserved element locus uce-3520"
BASE COUNT          239 a          119 c          118 g          261 t
ORIGIN      
        1 tactttctcc tttgattatg tagttgtttt atttcataat cctttctcct ttactatggt
       61 tttaaaatat gtccatctat taagaattaa agttaaataa ttaacaactt ttatttgttt
      121 agcagtgtgt ggtattttcc atggtgcttt ccatgcaaac tagatacatg tagtatttta
      181 ttgtcaaaat aatgtttcaa gttgtaaaat ggcaagggaa tactgactga gctattaata
      241 aaacacacca gcttttagct ggcaaagcag ccttctttcc atcaaatatg tctcagcctt
      301 taataaagaa actcaagtgg tgtaggtgaa aaattacttt tctcacccgg tcatctgtct
      361 gtcatgtatt attcaggtca ccaatgtttg tcctgaactg tatcattctg tagttgtgtc
      421 aggtatgaaa tatgttcggt gtaattccat cagacttcac gaagttgatt agaacagatc
      481 acctttcgca tgggcacaag ttatctcagc agattgaatg aaaaagactt atttatcttt
      541 gcctgataat aaagaaagag atgagcaaat ttatccatta acttgaaaag agtcccatat
      601 tttgtgtgaa aacaaactga aggcagtaat tctattgaaa atactttaat acaagaatgt
      661 ttctttgaaa acatgtttat gtttgaaacc agcaaatata aaccttgagc cacatgcatt
      721 ataacaagct tttaaat
//
LOCUS       KCLJ01000769             815 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 86483cal ultra-conserved element locus
            uce-6872, sequence.
ACCESSION   KCLJ01000769
VERSION     KCLJ01000769.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 815)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 815)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..815
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="86483cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>815
                     /note="ultra-conserved element locus uce-6872"
BASE COUNT          295 a          152 c          141 g          227 t
ORIGIN      
        1 tctttgaagg gcaattttag tattgttatc accacacata aaccagaact tacttcctgt
       61 tctttcccca aaagaaggac ctcagatgtc agaatcacta aagggatggt tctgaaatca
      121 agacttcaca catacacaaa aggcactgac ataatatcag attacataaa aatacacatc
      181 cttttaatct cctgtacata atgtgcttac ttttaaaata caaaatctgc cccagatggc
      241 taataatgcc catttgaaaa aacacaacac cacaatatta aagggctaaa atatgctgtg
      301 aacagattga gaggcagttc atcctagagg agagtaaaaa agtgcagatg ggtgtcaaaa
      361 atagccaagt gtcagatctg ttcaagtatc tccattctgg cacatgctcc cagtcacagc
      421 tgtcagtgta ttctctgtat ccaagtgcaa ggttttctaa cactcagagc tgacattaaa
      481 acacacttct tgcttgctac tgctttaaga gaatgctgca aataaaagat ttatttaatg
      541 gtaaagctta acattgataa gggtatacat atttgagtgt ggcacatgcc attttgatta
      601 aagatgcatg aaattttaac cagcaggtag attaagtaat ttaaatgcca aaggcttaat
      661 aggttttcaa aaatgtccac tctaggcatt ccaacatttg ccaataacac cgaataatgc
      721 aaaaactgat aagattgtgt catttcagta ggagaagatg agtttcataa aacataaggg
      781 aaacatcagt ggatgaaaat tatgcacaat gcaca
//
LOCUS       KCLJ01000770             694 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 86596cal ultra-conserved element locus
            uce-241, sequence.
ACCESSION   KCLJ01000770
VERSION     KCLJ01000770.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 694)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 694)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..694
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="86596cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>694
                     /note="ultra-conserved element locus uce-241"
BASE COUNT          209 a          115 c           96 g          274 t
ORIGIN      
        1 aaaattccaa gcccacaaac ttaaaatacg cctgcagaag ctcctactca attctaatta
       61 acaaagctta cctttctctt gaccatagag gtcatcatgt aaactattta aattgatagt
      121 aatattatgc agcacgaaat taattttaca ttgtatacag tttttattgt gactttatct
      181 tgtttcaaaa gtgcttactt tctgattttg tggatattac tgactggatt acttttattt
      241 tggtttttac acaacagtta tattagaaat ttgctgtttt attcttacct tcttagtaaa
      301 aatcctttta tcacacaatg ggtaatttat atccattacc agccctttca atccttttca
      361 gtggtgctgt cagtgccttt ggcacagtaa tgattaatgt gatctaataa tagtgtgcca
      421 ttatattacc ttagtaaaac atgtaccaac atcctattca gatctaccaa attcatagct
      481 tcctataata tttttgttga aagacaggat tactattttt caaagaggaa tttttttttt
      541 ttgcctttaa catatttaat gaaattcaca attctttgcc atggtaatct tcgtgcatgc
      601 atttgggctt gatgggtgaa ttttatatca ttctgcatta ttatgatttg ttaggcaaat
      661 tgtttgacac gtaaagaaag atatgcatta catt
//
LOCUS       KCLJ01000771             352 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 86707cal ultra-conserved element locus
            uce-3514, sequence.
ACCESSION   KCLJ01000771
VERSION     KCLJ01000771.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 352)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 352)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..352
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="86707cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>352
                     /note="ultra-conserved element locus uce-3514"
BASE COUNT           94 a           68 c           71 g          119 t
ORIGIN      
        1 cttccccttt tgaatgttgc tgaaggttct ttcaaagctc caataacagg ccactgcaat
       61 ataactggct gggcttggct gccaatctat aatgttcttg gccatgatta atctgataaa
      121 taataaatat atcaatctag tcttttagac aaggacaaat tcttaccagc ggggaggcac
      181 gaggcctctt ttacagctgc ctgtagtgct ggaattaatt atttaatgct taattcttca
      241 ggaaatgaga aagttttgat taatgttgtc cagtgtcatt tcttgcttgt ttgatatgtg
      301 tcagataatt tttcctcggc agtcgctctc aagaagccag aggctactgt ca
//
LOCUS       KCLJ01000772             540 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 86810cal ultra-conserved element locus
            uce-6070, sequence.
ACCESSION   KCLJ01000772
VERSION     KCLJ01000772.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 540)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 540)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..540
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="86810cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>540
                     /note="ultra-conserved element locus uce-6070"
BASE COUNT          178 a          100 c          107 g          155 t
ORIGIN      
        1 ttttacccag gcacaattcc aacaacagtt gcttttgact tacagcattg taacaaagaa
       61 taaggacttt ttatttatta aaaaggacaa ttgcatcgac tttaataacc tttacctcaa
      121 agttcacttg aaagaaaact agtaagactt tttactgaga gaaaaaaaaa gtttagctat
      181 ggtcagccag ggtgggaaat tccattgtgg ctgcaagccc atggcaggta gagtggaatt
      241 taatgaagga aactgctgtg tttttgtgtc tttctgtatg tttttccttt aaaaccaaga
      301 gctgggcagg cttcccattt gacctgatgt gacccaagca aattgcttct tatataaaaa
      361 caactgcaga cttggagaat gtgaaaatgc actgtatcct ttttccaact cagggaaaat
      421 gaaagcctga gaaacaggac ggccctgtca atactcgttg agcaaaacta tcactcaagc
      481 cctataaaga gagattagaa caggcttcct tatgccagag ggattcatta taagttagat
//
LOCUS       KCLJ01000773             764 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 86923cal ultra-conserved element locus
            uce-6520, sequence.
ACCESSION   KCLJ01000773
VERSION     KCLJ01000773.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 764)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 764)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..764
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="86923cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>764
                     /note="ultra-conserved element locus uce-6520"
BASE COUNT          231 a          153 c          146 g          234 t
ORIGIN      
        1 ttcttttact ctgttaaatt cagacgtaat ttaggatgga aaaatacatt ttagaattac
       61 acctgcagca tgtagtatta gtatgacttt ttcaaggcat gacagtgatg tttctacaat
      121 ctatacatat tgatttaggc tgataataaa caatttgatt aggctctatc tataggctgt
      181 catttcaatc actgtcactg ttccaataga gtggaaggca gatagcagac acatatggca
      241 agatttctca aaataaaaac tctggcctga ttagagccct aggttcagtg aattggacaa
      301 gacagctcag ctgccaggtt attaactccc tcagaaaata ctctgccttt tccccggggc
      361 cagcctgaat attctgatct ggatcgataa gcaatctccg gtgtgtacag aatgccagct
      421 agaatcattt gtctcagtgc agtctcctta caaaggataa aacacctgca gtatatggcc
      481 tcctctccct cctcttttaa ctaatgaccc acaaagaggg aagaagtaac tgaatctgtt
      541 ccatcatcag gaaggctctc tcaggtttgt tttaatgatc acaatggcta cctttcaatc
      601 ttacaaaaat tatatcagtc atggtttccc tgtggcatgt ttatgtaagt aatgtgaacc
      661 acaatgtaat gacaagtgta cagatgtcat tgtaagaggg cccttggcaa gaagatatct
      721 cagaatgtca gaattttaat aaaccctgga tagggttctc tttg
//
LOCUS       KCLJ01000774             587 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 87035cal ultra-conserved element locus
            uce-4661, sequence.
ACCESSION   KCLJ01000774
VERSION     KCLJ01000774.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 587)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 587)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..587
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="87035cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>587
                     /note="ultra-conserved element locus uce-4661"
BASE COUNT          196 a          109 c          104 g          178 t
ORIGIN      
        1 tatcacccaa aaaaaagcag cgaaatggag gcatgcgaaa ttcacccaac tcctcaccca
       61 aactgatgag gtaagactgt aagaaactca tatcttcatc tcctcctctc ctaaaaataa
      121 ggggaaaaaa aaagattgtt agatggtttc tgaaaggctg aagtatttat tctgtcagct
      181 tgtcagcagt taatgataga gctgaaaaaa aattctgtca tgaaaaacag tttgaaaagc
      241 tgtttgaaaa atacataggc tttaaagtct tagctgtcac cctgtcctgt ccatgtgtag
      301 ttcttaaaca gcagtggcac taatgatagc actaaccaat caggggaact catgtggtta
      361 gtttgcctca ggcaattctc tttttgttgg attccctctg agtactgttt tctgtactta
      421 aggccatatg tgagatgtat catcacaatc aaaaatgaac ctgaatatta ccttcctttt
      481 atcctgtcga ttgaaatcaa atttctgtta attgatttag actgatgaaa aagtctaata
      541 atatatgtac ttgccaaagc aaagttcaaa actaacgcag ttttagt
//
LOCUS       KCLJ01000775             581 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 87141cal ultra-conserved element locus
            uce-1018, sequence.
ACCESSION   KCLJ01000775
VERSION     KCLJ01000775.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 581)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 581)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..581
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="87141cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>581
                     /note="ultra-conserved element locus uce-1018"
BASE COUNT          202 a           72 c          118 g          189 t
ORIGIN      
        1 taaatgatca agaggagtaa aaaggacatt ccacacacat aaaatatgta attaaaatga
       61 tgaattattg taagatagaa tattagcctt ttgacatttt aatctgagca ggagagagtg
      121 agagagtgca tttggagccg ctcaattaaa tttagaattt tcccctccat tgttatgaat
      181 aaatagaaag attctgtagc agtctgcgga attattaatt gcaagtactg tagaaggtgc
      241 atgcaccgta tcatgaaatg gagtatcatt gttagtgact atatttcttg gtaattaagg
      301 cccagactaa tgatgcaagt tttcttcagc atgattttca tctgattatg aggctgcttc
      361 attaagagca ctcagactaa cgagctgtag ctgtaataaa gtaattttct gtcttgtgct
      421 ctgattgata aagagtttct atagctaaaa ggaattgaaa atataattat aattagaaat
      481 ggttgaataa agttattaca ggattgctga agggtagtgc aattgacacc ataatgtttt
      541 ttggaagtgt gcatcttaaa attagacttt ataaaaggaa g
//
LOCUS       KCLJ01000776             679 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 87252cal ultra-conserved element locus
            uce-7357, sequence.
ACCESSION   KCLJ01000776
VERSION     KCLJ01000776.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 679)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 679)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..679
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="87252cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>679
                     /note="ultra-conserved element locus uce-7357"
BASE COUNT          216 a          111 c          115 g          237 t
ORIGIN      
        1 aatcaaccat ctgcagctgt gcagcgagtc ttccaagttc ttcagccttt ttaattttta
       61 tcggtcttgt tttgttcatg gcatatttat gaccagtggg attgagatga aatgtacata
      121 catgaaaaaa atcagtgcta tactattttt tttttttctt ttaatgatat ttcattccaa
      181 caagctcttt ctatctagac gcttaattag atatttaaat gattggagca atgctgtttc
      241 tttaactcct aactgcaaca aacacatatg aaacacactg ttggcggcat ttaatcaaca
      301 gcagtcaatt tatcattttc acagttttag tgagtggttg tgaatcacta aaatcacagg
      361 tattgtagat gcagcgttgt ggcactatca ttaacaaata tacagtgcac agagggatga
      421 cttggtaatt gagtgggact aataagaata catcatttag ctgtatgtga caaactgtgc
      481 ctcaaaacac agccatggaa aattcacgtt ttgcttaata aataaattac acagccaatg
      541 tattatacat aatttgtgtc ctcatggatt tgaatgatat ataatgcata ctccaagtca
      601 tttatttatt aagactaact atatatattg tagttgggga attttaaact ctagagtaag
      661 acctgcatag gtaactgtt
//
LOCUS       KCLJ01000777             447 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 87360cal ultra-conserved element locus
            uce-7904, sequence.
ACCESSION   KCLJ01000777
VERSION     KCLJ01000777.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 447)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 447)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..447
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="87360cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>447
                     /note="ultra-conserved element locus uce-7904"
BASE COUNT          151 a           69 c           75 g          152 t
ORIGIN      
        1 tctgtgggca gtttaaaaat gtccatcagc tcatgacgca cctttacttt cacacgtctg
       61 ctgtttacta aataacattt cagcacagtt ttcatcaaag tgtttgaaac ttggaataag
      121 tgcacttaat taaaggaagg ctgtgaaaat gtgcactaat ctgatatgac taatagcaaa
      181 gtgcatgaaa ttgctaatta gaatttcatt aaaggtgctg ctttatcaga ctgcgaatat
      241 cacaaccttt aaaattcttt caggaaagct taattccttt tcaaacagaa atattcttta
      301 aagacatttg atttgttctg aaggaatttg tagcttaggc tgaaacataa aatgttgcca
      361 gtattccacg ggagtaatat ttgaataaaa atatgtatca ggtactttct ttcatcaggc
      421 agatgaataa tttttttgaa aatatta
//
LOCUS       KCLJ01000778             695 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 87466cal ultra-conserved element locus
            uce-6992, sequence.
ACCESSION   KCLJ01000778
VERSION     KCLJ01000778.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 695)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 695)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..695
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="87466cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>695
                     /note="ultra-conserved element locus uce-6992"
BASE COUNT          217 a          141 c          136 g          201 t
ORIGIN      
        1 aatttacaca tgaataaacc aggccaaagt taggttctgc tctggttttt cagcataaag
       61 gccccgagta aaagagggat ggatgcaaac agtgtctctg tatattgtgc tgatttctgt
      121 gcgaattggt ttaacaccaa cgacacacag cacacaaaaa ctcatatggg ctcaacactg
      181 caaggctgcc aatttaattt gaaatgactt gacagaaaat ctctaggcca ccaaatgcta
      241 ttataaagca ctgtattctc attaaaggtc tgagcccctc cctgagggca ggctcctcgt
      301 gaggctgtcc ctctggcata acatgtgata gagctaatct gtcttcactt ggacagcatt
      361 gcggatatgc aaacccaggt ggcactaata ggtttacagt aataactatg gaattggata
      421 cagtatgtta cactgtgaga aattcccaca gatcaatttt tgtggtgaag gttaaccaac
      481 agacatggag ccataatatt cttttttcat gggtctgtta acaattttat ggttttctct
      541 cccatatttg gacagaatat aaatatttaa cttttcaaac atatctacaa tatatgtgca
      601 ttctcctgga aagacaactt ctgttgtcag ttattccagc acaaacctgg aggaattcca
      661 ctggtttcaa agaaagatac caagtgagag tacaa
//
LOCUS       KCLJ01000779             738 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 87576cal ultra-conserved element locus
            uce-1194, sequence.
ACCESSION   KCLJ01000779
VERSION     KCLJ01000779.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 738)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 738)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..738
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="87576cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>738
                     /note="ultra-conserved element locus uce-1194"
BASE COUNT          207 a          176 c          154 g          201 t
ORIGIN      
        1 ccgagtgaaa gagcagagtc gcagcaccgg tgacccgaga aacctcattg ctccacttat
       61 actggcacaa tgtcatgttc tcagccactc catcaccagc acggggaaaa aaaaagcttt
      121 tcctttcctt ttagtcaaag gcagtgggta agcagagcac gcggttcaga gggtcattaa
      181 aaagcatcaa aggaggcagc ctcatgatgg taataagacg gctgcaagga aataaagtgg
      241 gcattgatct gcactatcga gtgtgacatt ttaaccgaag ctaaaagcca agagcagatc
      301 tagccctctt attcatctgc ctgcctgttt tagtaaattg tctttttttt cctccaacca
      361 gtggcctcag aggtcacttc atattagctg gcttgttaat accgaggcaa tcaatactta
      421 atcaacaagt aatgggattt tgcagtcatc ctgtatgatc tttcaataaa gccccgaatc
      481 tatctcagcc cattcagagc ctgactaaag gtgcacgatt gctgcagagc agggatttga
      541 tggtctgatg ctcttaggct gatctgcatc tgattaagac accatgcagc cactgtcctt
      601 cacccttttg ttcctttatc cccgtataat gtagcatggc acagaaattc gtcatcttag
      661 cttttagatg caacagcaaa ggaattaata tttccttagt gcatcatgat ccagcctctt
      721 ggccatgata tgcaacca
//
LOCUS       KCLJ01000780             750 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 87684cal ultra-conserved element locus
            uce-6426, sequence.
ACCESSION   KCLJ01000780
VERSION     KCLJ01000780.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 750)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 750)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..750
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="87684cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>750
                     /note="ultra-conserved element locus uce-6426"
BASE COUNT          152 a          222 c          169 g          207 t
ORIGIN      
        1 ccatgtatct tcagcaaagc ttcgcaggag atgcaaggag agcactcgga caaagtcctt
       61 aggctgtgag gcccccaaag agagcgctcc aaaacacagc gagtcagagc cagactctga
      121 cagaaagggg cgagtttgct ccgccgagca agacgtggct tttggctaca agcaaaaagc
      181 cggcaaaggc ggaacactgt tttccttctc cttgcaactt ccagagtcat ttccttccct
      241 cctggatgac gatggctacc tgtcgctccc taacctctcc gaaaccaacc tcctgcctgc
      301 cagtgtgcag cactacctcc ccatccgctc cccctccctc gtgccttgct tcctcttcat
      361 ttttttcttt ctgctctctg cctctttctc agtgccatac gccctcactc tctcctttcc
      421 tctggctatg tgcctctgct acctggagcc caaggcggcc tccttgagtg cctcacttgc
      481 caatgacctg agtgacagtt cagaggaaga ggtgtgtacc tcggcatcga acacactctt
      541 tttcgtgttc agtgcttcag tcctaaccag tgttagatag tggtcctact ttcagagcct
      601 catttctgtc tgtgctgata tgttagaagg gttttttcct tctttttttc tcatgctggg
      661 agtacagctc agagcccagg gttaggcaca acactgtgta gaagaggctt ggctgtaact
      721 gtgtcagttg gttcaaagtg acttgcacta
//
LOCUS       KCLJ01000781             677 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 87793cal ultra-conserved element locus
            uce-3356, sequence.
ACCESSION   KCLJ01000781
VERSION     KCLJ01000781.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 677)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 677)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..677
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="87793cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>677
                     /note="ultra-conserved element locus uce-3356"
BASE COUNT          215 a          119 c          135 g          208 t
ORIGIN      
        1 cactccacaa gtaattgtct gcacagcagt gacagatgtg caatatagca gcttcttcag
       61 gaaaaaatta acagtttgtc cagcatgtca gctcgctctt tttagtgctt cggaggtctt
      121 ggccccatta tggatgattt agaaattgag gcaagctaag accagctgcc tgggttgaaa
      181 gccttagtta gtagccctca tctgcattcc agtattcact tacatctaga aattggtagg
      241 gcccctctgg ccacaagatg agtatgggct gacaatgcct tgatttgttg agagagagaa
      301 taaatgggtt tttcagaaga tgaggaaata tcaccattac tggccaattt acagcatttt
      361 atctgttctt caaacatgtc acttttgtta ttgttgcatg gtaattacat agtgaaacgg
      421 aaagaaaaca aattctggtt acatattcag atggattgca aaatcatata atcgtgataa
      481 atgcccattt atgatacaca cggatgaaag gttcatttta attttgaata gctagcacag
      541 ccataaatag gatataggat tagatctcac agaatctgat tacctaaaag caaatagtat
      601 ttttcttcac ttcataacca ggaaattcag tgtgtgcagg gtatttaaat aagtaggttt
      661 tccactaaaa tatatga
//
LOCUS       KCLJ01000782             639 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 87903cal ultra-conserved element locus
            uce-1868, sequence.
ACCESSION   KCLJ01000782
VERSION     KCLJ01000782.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 639)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 639)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..639
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="87903cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>639
                     /note="ultra-conserved element locus uce-1868"
BASE COUNT          190 a          125 c          125 g          199 t
ORIGIN      
        1 ataaatgtca tgagttgtta acaagcacgg tgtcaagcgg ggcaaaatgt aattctgtat
       61 ttttttaatt actggaatta acagaatatg gcactaattt ctacagctac tgcttctccc
      121 cctccctgaa catgaagctt gatttgtgtt cttattaact ttgtcctata aatgaccttg
      181 caaggagagt ggttctggag gctaagtgaa acaatgtcta tattttctga agctccaggc
      241 taagttttat taatgtaatg tctaagatct ttgaagttgt gactttacca ggaaaatcat
      301 aatctccaaa cctttattca taatgggtat gacttccagg gggaacagaa tacctgctgt
      361 gctaattatt tcaattatca gctactacta aaacacgtaa tggattttct ctgcttccac
      421 aggtaaaagg catgacatta tggaacttaa ctctgatgtt gtgaacttga tctcccacgc
      481 tacacaggaa agattacgag ggctcctgga aaaactaact gtaattgctc ggcacagagt
      541 gtcaacccac aaggtaaagg aaatcattag caagttttgc tcaaagtttt cctgctttgc
      601 agccttgaag gtcctcttcc aagtgtgggc acatcacag
//
LOCUS       KCLJ01000783             816 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 88013cal ultra-conserved element locus
            uce-5382, sequence.
ACCESSION   KCLJ01000783
VERSION     KCLJ01000783.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 816)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 816)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..816
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="88013cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>816
                     /note="ultra-conserved element locus uce-5382"
BASE COUNT          248 a          133 c          168 g          267 t
ORIGIN      
        1 tttgcataat aaatatggtg tgggtagcta acatttcatg aaagctgtag tgtgtttttg
       61 tttctactgg ttcaaaacag catttgcttc ttgaaattaa atggaatctg attgagattt
      121 gtcctttcag agccttgtct ggtacaaggt aatgcatcga ctaccctatt gatattgtaa
      181 tttttctatt atacatagaa attctcatat tgcaagttgc tgggggcctt gatatttcac
      241 aaatttggga tcattaagaa tgttttccat gtcagagcta tactaattgt gactgtgttg
      301 atgacatcca ccattctact taaattgaaa attgctgctt actaaagaag ttggaccctg
      361 agcttaagtc cttggtgact gatttgatta gtccatttga gtgagaatag ggcaacacag
      421 gggctatgtt aatggaactt aaacaatagg ccatcactaa tcagagacct caaggttgaa
      481 gtgaggttaa ttgttatgcg ggtggtattt gaaaagaagt gttgactggt gtaatgcact
      541 atgggactgt agcatttgaa catgcagccc taaggccaga ggttttgttt agtttcccaa
      601 tgaaatttaa agctacatta tgtacatctc taaacaacag cctatatttt tgatacatca
      661 caagagcaac agctaattga taacagaaat gaacccccag gcacaaaatt cagatccaaa
      721 tctggtactg gattttaatc cctttctaaa cgtggtgagg tgggaattga ttgagttttg
      781 attaagccct tcatgaaatg cacatacaag attcaa
//
LOCUS       KCLJ01000784             667 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 88125cal ultra-conserved element locus
            uce-5716, sequence.
ACCESSION   KCLJ01000784
VERSION     KCLJ01000784.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 667)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 667)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..667
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="88125cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>667
                     /note="ultra-conserved element locus uce-5716"
BASE COUNT          198 a           81 c          142 g          246 t
ORIGIN      
        1 gtgtgccata taagacttta attttctgag cttaatagag tatttaaatg tccgtgcaag
       61 caagagagta tattctttgt gccttgtatt ttgtagagct atcagtataa gctggtaaag
      121 ttttgtatga agaaaaccct gaggggagct gtatagatgg tgagatttta ggttttaatg
      181 tatttgttcc atttttgaat gtatatagga atatgttgaa aatgtagata tatgccacag
      241 agtctatgta ttgtataaaa gatggctcta gaatttcggt actttggccg gaagaaaaca
      301 aatacttgca cattaatgcg attgtttatt tttgtaccaa agacaaatgc aactgatatg
      361 gcgaactgcc agtctaagta aagttttgca cagcttatat gatactgtac tgaatgtaaa
      421 aacaaaagaa aggtcagggt tagggatctt actgaactgt gaattttttt gtttgggtcc
      481 aattatctac agaaggagca ttcatacata acaatattat tttgctgttc ttgtagttcg
      541 cttccatggt agataagttg gtggccgtct tggagtcttt ttttttctct gcacttactg
      601 taggagattt taatatattt ggattttagt aagctattgg taaaatagtt tttgactttg
      661 agaattt
//
LOCUS       KCLJ01000785             707 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 88230cal ultra-conserved element locus
            uce-3907, sequence.
ACCESSION   KCLJ01000785
VERSION     KCLJ01000785.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 707)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 707)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..707
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="88230cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>707
                     /note="ultra-conserved element locus uce-3907"
BASE COUNT          201 a          133 c          112 g          261 t
ORIGIN      
        1 ttatattcag gaaagggaat ttcatgcatg accatctgaa gcacaacata ttccacacca
       61 tttagaacta tctcaggttc tcttttcata ttaatcactt ctacttaatt taaaatttac
      121 cagacaatca ctgagaaata ttccagttta aatatttgac ttgagttgct catctttttt
      181 ttaatgacca acttttcata tgggtataaa acagtgttta aaatgtattt tgttccctct
      241 ttctgaatag acttccacta ttatttttta ccaactagtt tcattgaaag gtttccagca
      301 ttacaggtaa tgtaaagtcc attaggtcag gctcttcata gcatgacatg cagtaaatta
      361 caagtgcttc aagcagctcg gtgaattaca gttcatcact ttgaaaggtt cccactacaa
      421 gactacagat atcagatctg gcagttagga tccaattaac actttggtca gaataatcag
      481 attgcgtgtg taagacttgt ataattcgtt tattgcttcc atgcatcttc tgtctgtacg
      541 taaatttgtt gctgttattt caaagcttgg aatcagtatt tcacttgcct ttaggttata
      601 tttcaagtcc ttttgcagtg cagtgatgaa ctctccctgt tccaccaatt tagatcactt
      661 gtcccataga tattactgct tgagaaatgg tttgtttctg gtagttt
//
LOCUS       KCLJ01000786             678 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 88339cal ultra-conserved element locus
            uce-1435, sequence.
ACCESSION   KCLJ01000786
VERSION     KCLJ01000786.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 678)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 678)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..678
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="88339cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>678
                     /note="ultra-conserved element locus uce-1435"
BASE COUNT          200 a          106 c          121 g          251 t
ORIGIN      
        1 tccaatggaa agtggtttca ctactggtac agtatcagca ccgaagggtt ttattccagc
       61 aagcactgtg gttgagtgac atcacctcaa ttttttatta tccaaaatat ttcatttttc
      121 atattcttta tttataaagg aacaatgctg ctgtaaatac attttttatt tcattccatc
      181 accatgagat gcagttccct atttgttgaa ggggtatata agctttttaa tggtgtcttc
      241 agaaattttt taaatgtaaa tactgatttt gatggtcctt aagatgtgtt taactgtgag
      301 actatttaac taatggtgtg gatgtgattt gtcatccagt attaagttct tagtcactga
      361 ttttgtgtac aaaataggaa agagggaaac tgcagctttt cattacaaac tccttgaatt
      421 gccagctctc ttgagtttta gcaaactcta attatgcctc tggatagtac atcatgcatt
      481 tctctctggc tttaatttgc taaagctgtg cacatatgta aaaaaataga ttattttagg
      541 ggagatgtag ttctagaatt attgcttatg tcatttctta agcagttatg ctcttaatgc
      601 ttaaaagaag gctagcattg tttgcacaaa aagttggtga ccccccaaaa atagtaatga
      661 aattacttct gttcagta
//
LOCUS       KCLJ01000787             622 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 88449cal ultra-conserved element locus
            uce-6230, sequence.
ACCESSION   KCLJ01000787
VERSION     KCLJ01000787.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 622)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 622)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..622
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="88449cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>622
                     /note="ultra-conserved element locus uce-6230"
BASE COUNT          166 a          141 c          173 g          142 t
ORIGIN      
        1 gctgagcgag gcagggtgcg gtgggtctcc cgggccctgg cggagtttat ggatgcggga
       61 ggtgcactgc aggagaaagg cgacacgtcc cctttaaaag gaaatataat ttacagtgtg
      121 cagccaggcg ggccatagtt tcaatctcgt ttactataga gaaaactctg ctagctgttc
      181 tctatcccac aaatccgatt taatcagaca agccagccag cgtggcttga agtaaaaacg
      241 gataattagt aaacagagag ctacttcagt gcttcattgg cattcgagcc gggctagtgt
      301 gtcgcattta aaatgcagtc tgatgaagtt tacaaaatca aaccatttgt tactcctatt
      361 gaagaggctt caggccactt gcaattaaat tggaattagt gcttagaatg agatacagca
      421 aattcatact aaaaagggat ctgactttca gacatttgac ttcaagacgc cagagcacgc
      481 gtgcatgtgc tggcctgcca gccccccaga gcccctggca gcacgcccag acctgctgtg
      541 tggctgggat ggggtgactc gggggtgctg tggcagcagg acaaaaggga gaggtgccaa
      601 tgctggtgaa ctgagcccca gc
//
LOCUS       KCLJ01000788             664 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 88557cal ultra-conserved element locus
            uce-7985, sequence.
ACCESSION   KCLJ01000788
VERSION     KCLJ01000788.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 664)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 664)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..664
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="88557cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>664
                     /note="ultra-conserved element locus uce-7985"
BASE COUNT          191 a          125 c          131 g          217 t
ORIGIN      
        1 aaatggtatg taagagcagg gagactgttt ttgtatgaaa ctttgtggct tacaatactc
       61 cttctgtgag ggaatggcgt ccagtttggg actgacaggc aggctacaat ctttgtgcca
      121 gcacactaat cccttgtctg tgggttactg aaaaccttct tgcatttttg ttcccagttc
      181 accttgctgc ccaattccac atatgataaa tccagtgtct gcagaaaggc agtcacctaa
      241 ttgcacagtg aagcagaaga aagccttgca aatggtatac aattttcaaa gtgttccaag
      301 ccttaggcaa aagcctttca actatgtcta aaactgaatg ataaaatatg ttgtacaaat
      361 tatctgtgaa caggaaacat gtggtagtgg caggggactg aaatgtaaca cttgtaaaga
      421 aatgggaact gccagtcatt tatacccttt tacttttctc tcagtcacaa gttccatgat
      481 attttttttc accatcagtt gatgttcaag tttataataa gacatttatc agatctcact
      541 aggccaatta cagctttgta gcccccatat gaaactaaag gtttagtttt gtccctttct
      601 tcttttatag aatttctgtt ttatccttgc aaggatatgt gtggatggaa ttctgaaaga
      661 gttt
//
LOCUS       KCLJ01000789             699 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 88666cal ultra-conserved element locus
            uce-5441, sequence.
ACCESSION   KCLJ01000789
VERSION     KCLJ01000789.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 699)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 699)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..699
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="88666cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>699
                     /note="ultra-conserved element locus uce-5441"
BASE COUNT          172 a          210 c          138 g          179 t
ORIGIN      
        1 ggaaccaact tacccccgag ttacatccca ttcaccagcc gggcttcctc tgccgcccct
       61 cctctgcgcg cctgcctctg ctgctgcaga gaggccacat atgtctgcaa acacttctag
      121 gcagaaagca gccagtgcag aacaaagaca gccggggttg ccttcatctc agcacaaggc
      181 agccagtagc tattttcaag cttgttcgct ctccccctct gagggcaccc tgctctgttt
      241 ctcccctctt tgcctgtcca gctactgcac aacacgcatc aattattcat tgcttgtctc
      301 ccggtttcca ggcaaaacca atcacagatg gagtcttgct aatgggctca tgccgtactt
      361 gccaacaggc tatttgtgct caagctacaa ccctctagag acaataaaga gaatcaggtt
      421 aagctttaaa acttcacacg tacgcgaaca gacctaaaac ggcgatagac atgtaagcat
      481 ccctatgaca ttgcttagga gtacgtcttc ggcatacagc atggcagaag gctgctgtaa
      541 atcttccgaa agggctttaa gaaaatcaaa cactcatctc acctcagctg catgttactg
      601 atattgatgg ttctcttttc tgtctctagt gatccatgtc tcgctttccc attacacaga
      661 gagctatgtc cttctctcat tctcgtgcac acacgcgca
//
LOCUS       KCLJ01000790             690 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 88775cal ultra-conserved element locus
            uce-1523, sequence.
ACCESSION   KCLJ01000790
VERSION     KCLJ01000790.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 690)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 690)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..690
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="88775cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>690
                     /note="ultra-conserved element locus uce-1523"
BASE COUNT          216 a          150 c          132 g          192 t
ORIGIN      
        1 aaacttcttg aaatagacaa gacctcatga tacatgcttt tcttctctct tttaacaaaa
       61 gaaaagtcac aattaaatag gcattattct taagaatttc tcattttctt ccttcctttt
      121 ggcagttttc tagcctgctg tagattgaag aaaataggaa taagcatctt tcgaccacaa
      181 acagatgtgc tcgataaaga aaatgtcagc aaaaatacta aagcaatgtg tcacagcagc
      241 tttctgacag atagagggaa aaggtaaaaa atgttctatc atgtccgaca aggtgttctt
      301 tttgagattt aaagatcact gtgcaacttt aaacatgttt gtcactttgg ctctgactgg
      361 agctatctgg agcttcacaa gaactttatc agctcagcat aggggggaag aaagaagccc
      421 attcccattt atctcagcca ggttcccttc aaagccaaca aataaattac agtgtacatt
      481 tgatacaaat tgatttctta actcaaataa caatgttgtc ctcccagtca ggccatgtgt
      541 cactcattcg cgagcctgag tgaaaggctc aatctgtctg cgtgacagaa ataggcctga
      601 cgcatctcac cgaggaatgc taataacccc ggcctggccc gggcctttgt gggcaagccg
      661 cgataaggaa aatcagcccg tcctgtcaaa
//
LOCUS       KCLJ01000791             376 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 88886cal ultra-conserved element locus
            uce-5895, sequence.
ACCESSION   KCLJ01000791
VERSION     KCLJ01000791.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 376)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 376)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..376
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="88886cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>376
                     /note="ultra-conserved element locus uce-5895"
BASE COUNT          103 a          104 c           78 g           91 t
ORIGIN      
        1 gccattaagc cccaaagaaa ggtaatcaat tccaactaaa aagcacttct cccgcaatga
       61 ctgcacttca aacccctggc tggctgccag ccccagccaa cagccatcaa tgtttctgac
      121 tatcacagga gcacgagggg ccatgcataa ttgactggaa gatgggctaa aactgtgccc
      181 aatcagtgtg tgatcagagc cgtgtggaat attcagcgcc acttgattac accgcggcct
      241 cggcctctcc tcatgaaatc tcttcaaggt ccagagtact gtaataagat cattactgtc
      301 aagcgctacc aatcgcagcc aatgagtctt gggataggaa gtcatacttc acaagctcct
      361 ctggtcttct tttttt
//
LOCUS       KCLJ01000792             737 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 88997cal ultra-conserved element locus
            uce-843, sequence.
ACCESSION   KCLJ01000792
VERSION     KCLJ01000792.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 737)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 737)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..737
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="88997cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>737
                     /note="ultra-conserved element locus uce-843"
BASE COUNT          192 a          184 c          172 g          189 t
ORIGIN      
        1 tcagacccat ggatctacag ccggtcacca ccatcagccc cgccccagct ggtgtggagc
       61 agagcctggt gagctcccag tgcgtcgggg agagcatgca gtgctgctcg gagcaaggct
      121 cggtgcagct gggagcgccc tggctgccca acaacatctc ggagaattgt tcggctggcg
      181 cgggattgga tggagccgac acttaccccg agagagagct tccacctgag cagagcagcc
      241 aaacggtcac ggtagacttc tgtcaggaaa tgactgataa atgtacaaca gatgaacaac
      301 ccaggaaaga ttacacctag tgactcgtaa ccttaacgtt acacctggtc aggtgttctt
      361 cagtcagcca gtggcaatgt tcatttgttg tctagaagaa cgtatttggt gcacactaca
      421 gtggtcttag cagcaatact gtttttaagt attccctcct ctctacaagc aggagttctc
      481 ttcacaatgg tgctatccct tgctcaggca gggaacgaag cagtggcaac actgtctgtt
      541 tttgtatgtt gatttcaatc ttaacaggga tggacataac acctctgagg acccaaccgc
      601 agcttttttc tcagtggccc atgtcacaaa accctaactc aggaatttcc tctgaatgtt
      661 caatttttca ttgaagacag cttctttaca catcaaagtt ttatagctaa actgtacata
      721 ttatatataa tatatat
//
LOCUS       KCLJ01000793             591 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 89109cal ultra-conserved element locus
            uce-3105, sequence.
ACCESSION   KCLJ01000793
VERSION     KCLJ01000793.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 591)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 591)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..591
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="89109cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>591
                     /note="ultra-conserved element locus uce-3105"
BASE COUNT          165 a          114 c          132 g          180 t
ORIGIN      
        1 tgagtggccc gaaaacttaa ctgctgttgt atctgagata aaccttgctc ctcttctctt
       61 gtggctaaca gatggaggca tccactatgt cacattaaag gaataattaa aagcttcatt
      121 tacatgcaat atgaaatgtc cagaaaagat gtgctgtgat tgtaactttg gattgttttg
      181 gttttctata ataaatgacc ctccaaatag tggttggccg gaggcatgca agaagcaatc
      241 catagtgtat ggatttgctc aatggcattt aaaggaccct gattaaaatt cagcccaggc
      301 tggagtgatg agaagactgt ttactgaggg ctgtttgaag tcgtccattg cactgcagcc
      361 agaccagagg gatgcacaga ttgaaacgtt ttaccttgcc tgtctgcatc tggctgtcag
      421 cagctgatga cactctaaca ttcttgagag gtctgactgc tgctacttat gagtcttaat
      481 tttcattgag gcagacaagc tcagcatcag agatcacggc aataacaaca acctttttag
      541 ctggatctgt gtttactgct acagatgcta cgtttagata tttgatttta a
//
LOCUS       KCLJ01000794             343 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 89217cal ultra-conserved element locus
            uce-6913, sequence.
ACCESSION   KCLJ01000794
VERSION     KCLJ01000794.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 343)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 343)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..343
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="89217cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>343
                     /note="ultra-conserved element locus uce-6913"
BASE COUNT          102 a           82 c           58 g          101 t
ORIGIN      
        1 caggaatcct ttatctagat aaatatatcc tacaaatctt gaaagaaaac aaaccttctc
       61 ctaaaagcag actgtaaaac agttgctttc cagaacttca tcctcttata aagcttccag
      121 ctctgctaag ctccctgcta caatatctca gcttgttcta tttgacggct gttcccctgt
      181 catcactcat tttcagtggg caagggggag caattgctgg gcatcaaatc atcatcaagt
      241 aaaccagcct tgacactagt taaaaaggga gatggatggt cagttggctt ctacagaaaa
      301 tattctctta agtatcctat cccttgatac cagcctagtg ctt
//
LOCUS       KCLJ01000795             723 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 89320cal ultra-conserved element locus
            uce-1860, sequence.
ACCESSION   KCLJ01000795
VERSION     KCLJ01000795.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 723)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 723)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..723
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="89320cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>723
                     /note="ultra-conserved element locus uce-1860"
BASE COUNT          207 a          138 c          131 g          247 t
ORIGIN      
        1 attatgacaa caaaatgaca ccatattgaa atggattttg gaaagaaagg ctaactgtcc
       61 aaagaggtcc atgctcgctc taattaaaat tggcttaggt ggcacaacct tcataattca
      121 gactatagct atgaaggata tgcatgttga aagcgctctt tgctcattag tgctatttct
      181 gtcagacact gctacctgct cttttcttaa tgaatgctaa gccatctctt tagaagattg
      241 tgctgcttcc ctgaactgag ggaactgtct tatttcctcc caagttcgtt gagagtaaaa
      301 tcggggagtc acctctttga catttcccaa cctctgtact tatttatctc tttgagaccc
      361 tgcgctccag agatatcact gtcttaatta agaagaagga tgtgaccatg gtaaattgac
      421 tgattccatt gattaaggac tagctgtaca agtaacattg attttaacag tgggtctaca
      481 taaatgtaat tgttcgaaca tggggctgca taattatggt gatgtacgag aatagttggt
      541 ttgtcctttt caaccttcac taacattctt ttgcatggta atgtacctcg ttcaattagc
      601 agaaatctta aatgttacaa aatgtctttt gtgaaggcac acagtaatca ttatagtcta
      661 atttaatcta acagcatcag acagatacat ctctttcttt tcctttcttt gtttctagat
      721 ttt
//
LOCUS       KCLJ01000796             710 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 89431cal ultra-conserved element locus
            uce-7522, sequence.
ACCESSION   KCLJ01000796
VERSION     KCLJ01000796.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 710)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 710)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..710
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="89431cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>710
                     /note="ultra-conserved element locus uce-7522"
BASE COUNT          189 a          164 c          142 g          215 t
ORIGIN      
        1 tacagccata ttttctcttg atgagtttct gtcctgccac tcactgtggt tgtaccaata
       61 ccaggaaagc ctattgtatg ctaaatttga agttcttcca caacttctgt ttgcacataa
      121 aatgggctaa acaacaattt agttgatttt cctccttttc agttgccaag tgtgccagaa
      181 gagaaaatat ggcttccata atttttttct ttagataaac ctcaaggtct tgcagcaaaa
      241 tttctttact tgatgtgcta caagtgatct aggctctatt gtagaatttt ttttccaaca
      301 tgcttcttcc cttgcaacag gtaccgtttt gcagagattc gctaccatcg ccctgaggag
      361 acccacaagg ggcgtacagt tccagctcat gtggagacag tggttttatt tttcccggat
      421 gtttggcatt gccttcccac ccgctcagag tgggaaaccc tctcccgagg atacaagcag
      481 cagctggtcg agaagcttca gggtgaacgc aaggaggctg atggagaaca ggcactgaac
      541 gctaatccct ttttctattt ctgcttctca caggcacagg aacacaggca caccacatac
      601 tacacaacat acatacacag gaggaacata actggtaaca atgactggta aaccagcttt
      661 cagcagtgta gtgaatgttg ctttttattt ttatttcagc tagttcacta
//
LOCUS       KCLJ01000797             659 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 89545cal ultra-conserved element locus
            uce-3115, sequence.
ACCESSION   KCLJ01000797
VERSION     KCLJ01000797.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 659)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 659)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..659
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="89545cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>659
                     /note="ultra-conserved element locus uce-3115"
BASE COUNT          190 a          109 c          144 g          216 t
ORIGIN      
        1 gtgggaggga aggtgaagca tttgagtcaa ataagtctgt aaaatatgaa aggaagcaaa
       61 ccaagtggcg agataatgaa tcaggagaag tggaagagga ggattaagag cttgccagta
      121 ggaccaaaac tgtccacgtt ggtcactagt gccagactgc tgtagcatgc tccttttccc
      181 tttctatttc agcctctgat taactctgct gtctgtgtct ttccagttcc tgtggagtgg
      241 tgttgtcaat tgtgctcttg ttggtagttt tttcactatt ctgctgctat aactgatcta
      301 ctaatttgct gttttgaact cagcctttgt cggaattatg ggtaacacaa gatcatacaa
      361 actgctagac tggaatagtt tcaattcagg tattttatta gtcattcagt actacatatg
      421 ctgacagaaa ttatggcagc tcagtgaagt tattagaaat gctctaggat atttaggttt
      481 aatcatcaaa tgcctaaatg tcacgttttc atgctgttaa agactttctt taaaattaca
      541 aaacataaaa tagtattgct aagaataatt taatatccat ctggaaagct gaatgttcag
      601 atgtttcagc tcagcatatt tagggtaagt tccttgcaca gttggggtca tgtcaggtg
//
LOCUS       KCLJ01000798             774 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 89657cal ultra-conserved element locus
            uce-729, sequence.
ACCESSION   KCLJ01000798
VERSION     KCLJ01000798.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 774)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 774)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..774
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="89657cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>774
                     /note="ultra-conserved element locus uce-729"
BASE COUNT          247 a          133 c          133 g          261 t
ORIGIN      
        1 cccttacatc acattttatc acagctaatc cagggatatt gtttctctga gtaacgaaat
       61 tgttctttag tgcatgacca gagtaaggga tattgtgtct tttagacatc acgtatagac
      121 aagaagatat aaatgagagt taataaccat caaatgtgtc tatttccttt tcctataaat
      181 tagagcatgc tttcctactg aattttgcaa gaaggaaaac agactccctc ctgctgatgc
      241 ggggaagcaa tgctaaatct ccctaaagat tcactctggc ttcttacagc tgtatgttag
      301 taccttttta tatgcaattt tacttcattt agtctttaag gttgtgcctg aggttagttt
      361 aaaaggttag ttaaatgtta atggatgtta atgctgcaat taaattgtta aatcaattga
      421 aaactgtggc tccatctcta tctgtgttag tgccggcctg agttgcattg gcgtataaat
      481 taaaagctgt aaatctagtg aagtctaatt agagaccaaa tttctcattt atcttatttt
      541 cacaggactg taagcactga tagataatca acgaagggct aaaacttttt aacattaaaa
      601 aactatttta tctatttcag gactcaggtg actgattata attcagatcc aattactgta
      661 aaaggtcata tgtgaaatga agttcttaca gacactacaa gttttatttt acaagtttgc
      721 atacactgct gcaccatcta catcccaagc aaaagtaaat acactgtagg agat
//
LOCUS       KCLJ01000799             768 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 89770cal ultra-conserved element locus
            uce-614, sequence.
ACCESSION   KCLJ01000799
VERSION     KCLJ01000799.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 768)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 768)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..768
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="89770cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>768
                     /note="ultra-conserved element locus uce-614"
BASE COUNT          183 a          202 c          180 g          203 t
ORIGIN      
        1 tgagatcctt cctctatcca aaatgagcct gaacctagac ttttcttgca gaattggaca
       61 agagctgcca ggatgccttc atagtcattt ctctgcaggt cattcagtcc ctcacgtgtc
      121 ctatcacttt tccaccacct caaacatcca cgtgtggctg aggagggcca gtaccagcac
      181 ttcacaacag ataactctac tgtctacaca atctacagcg aggagcacac atgggacgac
      241 ctgcgggccc gtgggtgtgc aggtctgggg ggaagagtcc cctcacacat cctcgtacgc
      301 aggttacctc ttgcttgtca tggttacact tctcgcacat ggccggcgag gagtaatgat
      361 ggaagacgga gcccgatagg ttatcgatga tcattaactc cccgtcgaag gagtccttaa
      421 taattaaaga gacactgtcc agccataagt tctcctaggg gacaagaaag gggggaggat
      481 gggagagatc attttaagaa tgtcgagttt tgctttcaag tttcatgtga atttggggtt
      541 gggttctcca ccctgactca tctggagcag cattctgcag gtacttgcac agggtcacta
      601 catttgctcc acaaggtgtg taaaggtgcc agagttcaat gataataagg agggacagtc
      661 ttcactcact ttgctcacgt ctcccttcca gctctgctgg agtcactcac tcttgatctg
      721 ccatttactc ttctcctgag ctcccctctc aaatttgctc ctgtcaca
//
LOCUS       KCLJ01000800             751 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 89882cal ultra-conserved element locus
            uce-599, sequence.
ACCESSION   KCLJ01000800
VERSION     KCLJ01000800.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 751)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 751)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..751
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="89882cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>751
                     /note="ultra-conserved element locus uce-599"
BASE COUNT          241 a          130 c          159 g          221 t
ORIGIN      
        1 agtttgcttt tagaaagttg aagtgtggta gccagggtat cttgcaaatg tgaccatcca
       61 aaaagttacc agaactgccc tcaagggatg acctagttcc cagtactgtt ctgagagatg
      121 aaattatgcc aggttggtaa tttgaataaa gtactctaaa acaaatttga acagtgggag
      181 agaggatggt gacaggaaca cctgtccttg ggatcttatt tagaaaatgc agcaagattt
      241 tactttaacg gggtctttca ggcagaaaaa tatggcagta acatgtgtaa aggaaatttc
      301 aatatgtttt gacaatagtg taatctagag aaagtgttat ccctcttgtg gaggtcatca
      361 ttcttaatac agtgtgtgtc atcaattctc aggacaacag ggaaaatgat ctagtcaata
      421 catatgaaac agaaatcatg cataaacatg ctgcctcact ataaagtggg tgacaccagt
      481 gaaaattgga tagcaggcct ggatgcaatt ttccataact tcttattatt cataagatcg
      541 tgtgatctaa taagccacac ctcaaattac tgtccattga aggtactctt gagtgataga
      601 ttctgacaaa ccagacagag aatatattat gattaagatc tgatgccagt agtgctggac
      661 tctcagccgc tgactccttc cagctggtgt tgttctttta ttttgtttcc aaaacgaggg
      721 agcacaaatc cctagtttat aaatgcttaa a
//
LOCUS       KCLJ01000801             524 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 89994cal ultra-conserved element locus
            uce-6743, sequence.
ACCESSION   KCLJ01000801
VERSION     KCLJ01000801.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 524)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 524)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..524
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="89994cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>524
                     /note="ultra-conserved element locus uce-6743"
BASE COUNT          149 a          136 c           95 g          144 t
ORIGIN      
        1 gccatatatg cttcagtgaa aagcaacagc agcagtgccc aagccactgt acagagttaa
       61 tgtcctgcaa tttttccctg ctcctgagag tctgagggag tttccagctc cacttttcct
      121 agcagctgcc aacgttgtca gcactgatct gtcagaaagg atttttcctg gcaaaacttt
      181 gaagctcctt tctgacatcc ccaacaaact aattgttgtc tcctgcctcc gagagccctc
      241 tgaagtccca acgagttagt gtcttctcag gagatgagaa aggggactca caaaatcaat
      301 ttatcaggct attacgcatt gtcatcagcc aaaacaaaaa cctgctaaag acaggagaaa
      361 aagaaggaga aacgggtctc tgagaaaagg ttacagaaca tccatcttct ctcctcttcc
      421 aattgtttcc tttctttacc cattttcata cccatttccc tccactaaaa gacactttat
      481 gacaagcatt gtaatctctt tagaccaggg ggaacctctt cttt
//
LOCUS       KCLJ01000802             336 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 90107cal ultra-conserved element locus
            uce-1268, sequence.
ACCESSION   KCLJ01000802
VERSION     KCLJ01000802.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 336)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 336)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..336
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="90107cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>336
                     /note="ultra-conserved element locus uce-1268"
BASE COUNT           99 a           57 c           69 g          111 t
ORIGIN      
        1 agtgacctgt tcggtttcat atatgaaagg tgcacattaa aagaatatga gctagcaaat
       61 atctttactg aagcactgtt ggcagccgag atcactgaca acttcctggc tgtgattcat
      121 aatctatatt ggtgcctttg agacagcaag ctattgattt ttcccagtct ataatccaag
      181 accatataca cagcttgtta gacatctgtg ggaatataaa ctgagttttg atacaattta
      241 gggagcttct gttagcaggg cactttttgt ctttgagaaa atctttacac ttctgtgtaa
      301 tcttgaagag aaacagttaa ttcaatagtg tttggg
//
LOCUS       KCLJ01000803             410 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 90214cal ultra-conserved element locus
            uce-5156, sequence.
ACCESSION   KCLJ01000803
VERSION     KCLJ01000803.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 410)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 410)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..410
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="90214cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>410
                     /note="ultra-conserved element locus uce-5156"
BASE COUNT          154 a           65 c           58 g          133 t
ORIGIN      
        1 tttaatcatg tctagtttca tagacaaaag taatcactaa aaagccagtg gctacaaaaa
       61 ctgcaaacaa aatgaacctt taaaagctaa tgacttaagg gtgattttac agacatataa
      121 agtatgttag gggcttacac tatttgtcat taacacatat tttgaaagct cggctaatat
      181 aatgtgacac aaaattagtc aaacacaatt catgcaatat tgtttaattt tactcctcat
      241 ttaacttggt tttaagcaaa atcattatgt cacatgataa cgttcacttg aacaagaaat
      301 attttataat ggtgtctgcg tttcgaaatg agttattagg agctacatgc tgaacacatt
      361 cttaactatg aaaactataa agctaatagc ttcatcatat tttgacaaca
//
LOCUS       KCLJ01000804             428 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 90318cal ultra-conserved element locus
            uce-5595, sequence.
ACCESSION   KCLJ01000804
VERSION     KCLJ01000804.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 428)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 428)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..428
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="90318cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>428
                     /note="ultra-conserved element locus uce-5595"
BASE COUNT          138 a           96 c           60 g          134 t
ORIGIN      
        1 ttttggtgtc aaaacaatta ggcacacata aagctgtcag aaaatacccc ttttcaaagc
       61 tgtttttcac acccgtgaaa gataaaaagg tgctcattaa tgtacggggc attaccttgt
      121 aagggatata acaactcagt aagacaaagt gaaaaatgag gtagataatg taacaataat
      181 aaattatctt gacattcact ttctttatgg tccttcaagg gtcattgttc ccaatttact
      241 aagagaacca catcatcaaa atttttcttc aattatcatt tttttcttcc ttctgcagta
      301 ctgcaaatag aacaactttc ctcatgctag ctacaacact acatttccac cctttaactc
      361 agaggtctgt ctccatccaa ctaaccccga tgaaagtttt agccacctgt ctgctcttac
      421 atgcaact
//
LOCUS       KCLJ01000805             661 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 90422cal ultra-conserved element locus
            uce-4986, sequence.
ACCESSION   KCLJ01000805
VERSION     KCLJ01000805.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 661)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 661)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..661
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="90422cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>661
                     /note="ultra-conserved element locus uce-4986"
BASE COUNT          180 a          149 c          138 g          194 t
ORIGIN      
        1 catccagcct gcccttgaat acttgcaggg ctgttccctc tcattacagc aggaggattt
       61 ttgccattgc ctcggagcga gtgtgctctt tcttccaaga ctcacaccag ggccgcttct
      121 ctgcatgtgt ggtctcttgg actgcgagct cataaataaa taaggagaaa agttcttaat
      181 cttcattcga aagctcctgg tatcacaatg ctgctgcaca aaagccatct tattagcccc
      241 aagtgcaaaa tgctgccttt tcttgcagaa gctcattaat tgcaggtcac cattcaacaa
      301 gaaagatgag gcacttgagt tcttcaggct ctcattagcc accgagctga acagtatgtg
      361 tgaaattaac agtcacctga gtacctctat aatttcataa ttattaggcc taatgggtta
      421 gtctctgcca aatggtttta actccttcct agccagagct cgcatgagat gccaaggttg
      481 gcgcaaacca tttaacagct taataataat aaggagagga agtttccagg atcatgtact
      541 gtttgcattt tttaacatat gtttagcttt taattattca tatccagcgc gccaaggaag
      601 cagatagcct gtatcccaga gagtgggtga aagagctttc tctgcaaagg gattttaatt
      661 g
//
LOCUS       KCLJ01000806             415 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 90522cal ultra-conserved element locus
            uce-694, sequence.
ACCESSION   KCLJ01000806
VERSION     KCLJ01000806.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 415)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 415)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..415
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="90522cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>415
                     /note="ultra-conserved element locus uce-694"
BASE COUNT          138 a           62 c           81 g          134 t
ORIGIN      
        1 gggcgcatga tttctttcat ctcaactaat tagagcttcg tatgcttatt aaaaaagaaa
       61 gtattaaaat acaaaatcat attactatgg tatcaagaag cagaatatta caatattcaa
      121 atgctaatca tataacttag gagatgactg cagaaagttg tgtatttgaa ctgagacata
      181 aattataaat tgtaaacagt gcatagggga tatgttataa ctgtgtctca tttaaattaa
      241 ggcagaaagt tttctctgaa gcagattatg tgccttcatt aagttttaaa gtatcttcta
      301 taatgtttta ttaagatcac ttggcacagt gtttcccaaa ctgggtgtta gcaatatgta
      361 ctggtggaaa cagccacagt ggtggaggtg gctcaggtgc cttgctgcac tccac
//
LOCUS       KCLJ01000807             542 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 90627cal ultra-conserved element locus
            uce-355, sequence.
ACCESSION   KCLJ01000807
VERSION     KCLJ01000807.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 542)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 542)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..542
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="90627cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>542
                     /note="ultra-conserved element locus uce-355"
BASE COUNT          189 a          113 c           91 g          149 t
ORIGIN      
        1 ttgtctgcag agggatatat gctgttttaa atccaaagga ctgcagacat agatggtggg
       61 taaaatctgt gaaccataag taaattctta taaggaacat acaaaaaaga ttgttcttca
      121 gtcagactta agccattact ttcttcaaaa gaagaaaaga cgcaagttaa gaaaaaggca
      181 ccgccaaaga ccttctgccc aaatgtgcat ctccatgaag tttcctgctg agtgcatatg
      241 aatgcacagc gatctgggaa aaggatccaa ataggatttc aaacatccaa aaattttaac
      301 tcaaacattt aggtatttca ccatgctgct attcattcat tcactgattt tttttgtctt
      361 agtttaaaga gatgctaaac aaaaggagaa gagctctaca tgtatttaca ttccaaaact
      421 aagctcccct taccaccccc ctagtctgtc atcccttcat agctaaacaa accgtaaagt
      481 ctagccctat gtccttgaag caaagtcaca aacacagtaa cagaaaagtt tggtctttca
      541 ag
//
LOCUS       KCLJ01000808             631 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 90736cal ultra-conserved element locus
            uce-5923, sequence.
ACCESSION   KCLJ01000808
VERSION     KCLJ01000808.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 631)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 631)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..631
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="90736cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>631
                     /note="ultra-conserved element locus uce-5923"
BASE COUNT          191 a          105 c          111 g          224 t
ORIGIN      
        1 tagtgtggaa attctactct catcttctaa ctctctcctt atttgactag attcttttaa
       61 ctgaaagaca gtcccttcaa caataaatta tgaaaacttt aataaagagg aatgcttttt
      121 agatatttaa atgtataaat ctcactcatc tgacatccat tgtctcagtg acatcaggtt
      181 tgcttgtttg gaatttcata tttccaaaca gaagagaatg taagagctct aattcaaagc
      241 atcaatcaca gagaatgaac gtaacttaat gtcactgctg aatcaggcca tcaatttatt
      301 gctttgtaaa agcaatcagc aagctatcag gcaataaagt gtatgggaga agtgcttctt
      361 ttgaggtagc acagccattg acaatgatat actgatggag aatagcaact attttacagt
      421 gtagtgtgcc tattacttgt taaaagctct gagctgttca acagatgtga aatatgtttc
      481 ttattattat ggatcaatct agtttgttta atagccttgt atggcactta gattcgctgt
      541 cttatttaat gaggttatat ttgcactctc tggctctttt gttttagttg aggtatgact
      601 tttccactct gttttccaag aagcaatgga t
//
LOCUS       KCLJ01000809            1397 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 90842cal ultra-conserved element locus
            uce-1250, sequence.
ACCESSION   KCLJ01000809
VERSION     KCLJ01000809.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 1397)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1397)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1397
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="90842cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>1397
                     /note="ultra-conserved element locus uce-1250"
BASE COUNT          465 a          232 c          251 g          449 t
ORIGIN      
        1 gataaaacat gaaaaagtga gtgtgctaaa aactatgggt cattgctctt agtataaccg
       61 gtccagagaa gaaaataaat gttttcttga atgcctgtag catgatgaaa aatcattttg
      121 agaatcaaaa gaaagtgatg tcatacaaga aaactgtttg aactgataag aagcaagtgc
      181 ttatgccaac atctctgttt gttgctgagg tctctctgct ttagagtatt gaatggcaaa
      241 gcatgtcagg atagctccaa tcaaacagcc cagagtcagc ttcaaacttt aagtgacata
      301 gaattgtgac ctttcactaa taaggtatac taaatgaact tagagagctg agtgtttctg
      361 tgaggctgtg gaaaatagat atgagcgggt ttagttcctt tactaaagtt ctgaagttaa
      421 tccctgctat acagtataat ttaatgtttt ctgcctacaa caaaaatagc agctgtcccc
      481 ctatttgaaa tagcattcgc atgatcacta catattcata ttcctatgca tacgttatca
      541 cttaaaaggc tttctaatta caacaacaag acaaaaactt cttggattct ttccagactc
      601 actaaatgat aaaataagct tgtactctct ccttcttaat ctccgtaaag caccttggag
      661 cctcatctcc gaaatacatg cgaatgaatg tgaaaatgcc atttagagat gcaggtgtga
      721 catttgataa gaaacttctg gattaaatat gttctgctaa tgaggatccc agctaccccc
      781 atcagggcta actattggtt ggattgtgtg tgagctgata acattccaca tgcgaacatt
      841 caaattcatt attaataaac agcccaagtc tctatcagaa aagtctggat cctttagcaa
      901 gtgagggatg ttgcttctca ttaggagaag acatcaaatc ttccagaatt tagcaatttc
      961 atttttggaa ccaatttcta acagtgtatt aatggtgcat tgaaaatctg aacaaagcct
     1021 tcatactttt tattcatttt gtaaattaca gtaatctagg aaggtttgac taagctactg
     1081 gagcaatggg cggtaaagac attgtactga agcattgcag ttctaatgat ttttttatga
     1141 ttaaacgttt atgaggaaaa aattcatcct tggagaggaa aattaacttt cagcttgtat
     1201 gttcattatc tttgatacca aagtgaaatg tggtttcttg ttttttttta aacttgcaga
     1261 tgttaaagga aatattaaaa tgaagatatg tttcagctga tgttttaacc aaataaaaag
     1321 cttttaattt gccatcttat agttaatatt acaaatggcc agacacgtca tggtacaatt
     1381 tctatattac aaagtaa
//
LOCUS       KCLJ01000810             751 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 90954cal ultra-conserved element locus
            uce-2112, sequence.
ACCESSION   KCLJ01000810
VERSION     KCLJ01000810.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 751)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 751)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..751
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="90954cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>751
                     /note="ultra-conserved element locus uce-2112"
BASE COUNT          221 a          125 c          165 g          240 t
ORIGIN      
        1 taaaataaaa gttacgagtg ggcggtgaga ggccttttag atgaggtctt tctgattcta
       61 agaaaagcag tgactcaaat ttaataaaat taatatagat aaaatatttt aatcttattt
      121 tagcttcctg gcatgtaata tttatatata gttgtaactg ttaaactcat tttaatggat
      181 gaatttttat gtaaaagtga tgttctgtgc tgcaagcagc aggtgtgttt ttaatcttta
      241 ataggtcacc ttcctcagtg caagcaggca agctgttatt gatcaaagag gttttgttgg
      301 gtagctctca gattattgag tgacaaactt tattggattt gacttaacag aagtcagaag
      361 acagctgaag cataagagct tgcactacca tcagagtcat tttacgacag ccagggagca
      421 aagctcagag atggatactg agctctttgc tggcccttgg agattaactg aacagccttc
      481 ctaccaattc ccaagcctgt cagcagaacc aattagattt tcaaccagta gacaagaagg
      541 gtggcacttg gggacctttt tgctttaggt caaaggcttt tcagactgcg atgagatgac
      601 attgatgatg acacgttgag cattggttgg ttttaagaca agttaaatta gcagtcttga
      661 aatgattcca actgtctcct gacttctcac tgttgccata ttcagtggat cctgtcagga
      721 gcaggttgat gacttaatag tctttcttga g
//
LOCUS       KCLJ01000811             584 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 91066cal ultra-conserved element locus
            uce-6821, sequence.
ACCESSION   KCLJ01000811
VERSION     KCLJ01000811.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 584)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 584)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..584
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="91066cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>584
                     /note="ultra-conserved element locus uce-6821"
BASE COUNT          121 a          157 c          156 g          150 t
ORIGIN      
        1 aataggatac cagagaagca cagagaaaga atccaggcaa tcaccaggta aagtcagcct
       61 tactttgatt tatttccttt catctcgcct gcaagctctt gcccgaaggg agcaggagag
      121 cagaattaaa tgtctactcc tctcgttcgc ttccttagga tgggaaggtt cagcgtccac
      181 tggatatggg acaagatcgc ttggcaaccc ttgtggattc tccttcttct ggaggcgaat
      241 tatagttatg gatttattgt cccggtgcag cacttccacc aacagcagca gctttctgac
      301 tctcttcggt gacgggtatt cttgggtgga taatacggat tacgttgtta ttgcttaaga
      361 atacgcgtag tcgaggagag taccggcggc gggcaggcag gcaggcagcg cgaccgcccc
      421 cagcccacca gctggctcct cacctcctct agttgccaag gtagcacctt ttccatcttt
      481 tcctacgctt tgcaatgttt catctgtgtc tctgcccggg cggggggctc ggacgccctg
      541 tctcttgcgg atgcgtggga gcaagccggc tgggccagct cctc
//
LOCUS       KCLJ01000812             836 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 91177cal ultra-conserved element locus
            uce-734, sequence.
ACCESSION   KCLJ01000812
VERSION     KCLJ01000812.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 836)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 836)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..836
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="91177cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>836
                     /note="ultra-conserved element locus uce-734"
BASE COUNT          249 a          148 c          199 g          240 t
ORIGIN      
        1 tgcaaatctt tcactggaac agcaaggatt ttaaaaaata aattatgact gaccagaata
       61 gaaacagtgt ccacagttgc aaaagccatg ctcatgaaca gacattattt aaaccattta
      121 tgtgaaatgt atggatactg tatgtttagt ggcattgtta aaacagggtg tctgtacaaa
      181 tatttagctg tgagaattat aaaatcataa ggcgattaag ttagctagtt gtgaaattcc
      241 aatattgctt tttaaatgac ttcaggatat aggaggtgct aaggttatta tctgttatca
      301 ggaatacagc ggaattgtac gactggataa taactaaaca actgacacaa tgtaaaatta
      361 cattatcagt gtgttaaaac aaaattgcgc cctaaaggag tctacatgcc agctcagagc
      421 tgcagtgtaa ttatgcttaa ctctgataat taaaatacaa cggagatcaa cagaatcatt
      481 ttcattaaga aaattattaa tgatggtggt ataacagtaa ttgattgcag agcaccacag
      541 gataactctg tgcaggaaag ccaacatgtg taacgtgccg gtcgggttgc gttgcatccc
      601 gctgagcgtg ctgccggcca ggtggcagcc gtggggcacg tgctgcaaat cctaatttag
      661 atggctttgc aggctgcccc tcgcagggcc agggatgggt gctggtgcac cggatgatgg
      721 gatggggtcg ggtatcgctg ccgatggctt caggcgctga ctcgcacatt ttaagccagc
      781 cgtcatctca gtttgtgttt ggttttgcat ttccattagt gatttactgg tgttat
//
LOCUS       KCLJ01000813             611 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 91287cal ultra-conserved element locus
            uce-3582, sequence.
ACCESSION   KCLJ01000813
VERSION     KCLJ01000813.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 611)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 611)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..611
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="91287cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>611
                     /note="ultra-conserved element locus uce-3582"
BASE COUNT          190 a          117 c          129 g          175 t
ORIGIN      
        1 cagctccttg cagaaagact gaaacatgat cagcagagaa gggtgttggt gtcggtaaga
       61 gaaaaatgat tcaagttgca tcatctgtat aattaaaatc actgtgtgaa ttttgatttc
      121 tactttcaga catttgagga tgcagtcaag tcaatggagt tctgttgtag tggttgcttc
      181 agtgaacatt caacgctgtc ggtgagtttg gaattaaagt gaaaaccatc gaccgttgat
      241 tgtaccctcc agctaaccat cctcctcctt acttcatgct ttcaggcctt aacaccgaag
      301 atagcaacct aaccatcaca tgatgtttct ccctcaccct gccaagcttt aaaaaggtca
      361 caatcaacat tcattgctgt cggtgggttt aactatgtgg acaagctcac tgaacaatga
      421 atgcaactgt ggccccacaa tgtacagctg ctgttgagag gagaatagtg agaagcaaaa
      481 cacagttttc tggtaaaaat aatttttgag tgtgtttaac ttagctgact ttgtcctcac
      541 atcgaaaatg tgaaaacagg ataggaaaga gaaaagaata tttcgtcatt taactaagca
      601 ttgttgaaga g
//
LOCUS       KCLJ01000814             827 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 91397cal ultra-conserved element locus
            uce-4978, sequence.
ACCESSION   KCLJ01000814
VERSION     KCLJ01000814.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 827)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 827)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..827
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="91397cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>827
                     /note="ultra-conserved element locus uce-4978"
BASE COUNT          224 a          162 c          205 g          236 t
ORIGIN      
        1 taacagttca tcgcaccagt gcaacacact aatgtttaat acaacttgca tgtgactttg
       61 tattggctgt gttgagtttt aacttaccaa aaccttcaag tgcattttgc tgcttcttga
      121 aaccacttcc aaatgagcac tggcccggca acatttgcag gagtgcacat ttcagaacag
      181 gaggggccaa aatgtaatgc tcaggaggca gagcttccta aattgttctg caggcactaa
      241 tccatcctga agtgagtttc tcattaaagc tgaactgggg aagtagcgtg tggtgttcca
      301 cccagggggt tctgatgcat tccttttgaa taaatttatt gctgggtaat ttctatgtga
      361 caggagtata tcaggcgaca gctagaagag gagcagcggc acttggaaat tctacagcag
      421 cagctgctcc aggagcaggc catgttactg gtaaagcact gtatctgttt tgttcagtag
      481 ctataggatc catttatcca gccagtccta ggcttccctc agtcgggcac agctgcactg
      541 acagtatgac aacaaaggag cttgattaaa aggccattta tgctagtgtt gtgggctgac
      601 aggcacatat gagaagtgct gtatggtcac actgctttct gggcaataag aggaggcttt
      661 atgttaatgg aacagttctg gtgtggtggt cgagtttctg aacagacctt ggcattcatt
      721 gaagaactgg agtgcttgtg ttgcagatca aaagcacaca tgatatgtaa aggatacaat
      781 ggcctagtgt tggtctaaat cattgtttta tgaacttaac actggat
//
LOCUS       KCLJ01000815             683 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 91507cal ultra-conserved element locus
            uce-4910, sequence.
ACCESSION   KCLJ01000815
VERSION     KCLJ01000815.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 683)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 683)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..683
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="91507cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>683
                     /note="ultra-conserved element locus uce-4910"
BASE COUNT          209 a          127 c          123 g          224 t
ORIGIN      
        1 agtagtttct gatagcacaa ccctaaagaa acagaaaata catttctttt gatggtctga
       61 caatgacaac atgtagctct ggatccctgc atgctctatt gatctgaccc ataaaaggcc
      121 catggttcca tctcttgttt gtattcttca ttttattatc attctctctc taaggtcagc
      181 agtgctggtc tcccagagac cattagcatg cttttgctta tttaattcac taactgctga
      241 agtgcatgct gcttttagtg gcactcagac aactccaagc actgaacggt ttggtttcat
      301 gtacttgaac tcaagtgaca caaatatttc agtggtgaat caatactggg aaaggatggt
      361 cagtaaggta gggagtgttt atagaagatg tttcatcact actagtaaaa catgtcttat
      421 tgttagttca ggaggtgctg gtatttagct ctttgaagga gacttctgac aagccaacaa
      481 ctctcagcct gctagtaaaa caaaatttta aaaattgcac aagcttagaa atgcaaatat
      541 gtcttcagat taactgttta ggaattctga tttccataaa aagacacaac ttttgcaaca
      601 ctaagtatat ggaaatgttg aacatgaagt acatttttcg atttcatttg acccgattaa
      661 taaaagaata tttactcttt ctt
//
LOCUS       KCLJ01000816             537 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 91610cal ultra-conserved element locus
            uce-4222, sequence.
ACCESSION   KCLJ01000816
VERSION     KCLJ01000816.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 537)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 537)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..537
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="91610cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>537
                     /note="ultra-conserved element locus uce-4222"
BASE COUNT          179 a          116 c           82 g          160 t
ORIGIN      
        1 ttccatacag aaatgacatt caatctacct attgaactga acgtcttcag agtgtactgc
       61 aatgtaccat atgtaaaagc cagtaaggtc acaataattg aatctaaata agttgctgct
      121 gagggcaaag aaaaacttgt tctctctttc aacctttgta ttaattttcc ctcaattcaa
      181 ttccatctaa gtctggtgca ctctagtttt acaattcaat tggcattttt aaccaggaag
      241 aacattgctt aaaaacaact tatttgaaaa actacaaaaa gtaattccat agagacttgc
      301 cacttgactg acacctgtca tctcatgata aatgactcca ttttctgcct ctcttgcctt
      361 ctgccactcc ggcaatggtc atttatcatc atctctgtca gcaatggaaa gcagcactga
      421 cagtgcaagt cagcaaacat ttagcacatg gaaccacgca acacagggaa attattattg
      481 tcagaataat aatggtttag cataatttat tacaggtcca ccaaataagc aaaggct
//
LOCUS       KCLJ01000817             710 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 91719cal ultra-conserved element locus
            uce-5849, sequence.
ACCESSION   KCLJ01000817
VERSION     KCLJ01000817.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 710)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 710)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..710
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="91719cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>710
                     /note="ultra-conserved element locus uce-5849"
BASE COUNT          237 a          133 c          107 g          233 t
ORIGIN      
        1 gcttctttgg gagtggcagc tgtaaactat taaatgctta ttaataacta ctagcagtaa
       61 tgtcaaacac aactacaatt tcattagcaa tagagggaat gtaacattcc cttcacttcc
      121 tcaagaaacc attagcaatt cttttcatgt cttctggtac ttttcttgca aggatgcttc
      181 ttataatgta cagctaattt tgacaaattt acgtaattga aggagaggat gatggatttg
      241 aaactctgat cagcagctgg cagctgtgca gaaaaaagct gcttctcttc atcaatgtca
      301 aagccagaac tgatgaacaa aatttgccct tgacaattag aagacaccca tgaatttctt
      361 tagactgctg ggtacagttt tcttaaaaat gttcttgtca gactccaaca cactacctga
      421 cagcttaatt aactggcttt caaccgcaat ctcagatatt taaaacttat taaacttaca
      481 ttccatattg atgtctggct gatagatctc tgaattgcac agttgatatg tgcctttttc
      541 cttgaaaagc catgaccaat acaatatgta tttaacactg atacatattt taactttcac
      601 tatttaattc atacactata caatagatat ttaaatgcta atattgaaat gaccaataga
      661 taaagatgat agatttcctt gctcttgacc aaaaagataa tatttgaaca
//
LOCUS       KCLJ01000818             505 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 91829cal ultra-conserved element locus
            uce-5103, sequence.
ACCESSION   KCLJ01000818
VERSION     KCLJ01000818.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 505)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 505)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..505
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="91829cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>505
                     /note="ultra-conserved element locus uce-5103"
BASE COUNT          153 a          105 c           89 g          158 t
ORIGIN      
        1 tgtatggaag cctgctttta gaaggaagtc tgtcaattca aaaaagatag caaattttcc
       61 gcctaaggag aatattatgc cctcctgcac atgaaatata tctccataac tattgccatg
      121 cttgcaggca ctcctaagct atggatctgc cctagttaga ttactttcaa caggattact
      181 gcaccccctt aaccaaatgc tttatgtctt tgttcatatg gttttaatat ggttttaacc
      241 aattgcaagg ttatttataa gtttgcaact ccccagtagt tagagttatg aagcgttcag
      301 atttaagcat atccagttgt gtggtaaccc aactactgct ttcatgcggt ttccaacttt
      361 ttattcatgt acaaaggcat gatgcatggc agcatctgag accattgtga ttaactcttt
      421 gtttcagcag cgctgcagcc tacagtaaaa ttacataaag atgaagatta aaacacacaa
      481 actgtgaaat tccaccacag actga
//
LOCUS       KCLJ01000819             504 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 91936cal ultra-conserved element locus
            uce-1188, sequence.
ACCESSION   KCLJ01000819
VERSION     KCLJ01000819.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 504)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 504)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..504
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="91936cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>504
                     /note="ultra-conserved element locus uce-1188"
BASE COUNT          160 a           68 c          121 g          155 t
ORIGIN      
        1 tttccttgcc aactcattcc tgacaatgtt aatgattcac tataaagcag cttctgtgct
       61 atgatttgtg acattcaggc tggttagatg ggaggactag gcaggtttct ggggagtgtt
      121 ttggatgcag aaatgccttg aagatagcac tttattatat ttaggacaag tatgacatcc
      181 cacttcaagg aataggcccc tatacatatt gagaagggat ttctgtggtt taagtgggga
      241 ggagaaggtt agtttaaaag aatgcctctg tgttttttga gacgacataa agataggagg
      301 tagagaaatg gaggcaggag gcagaagggt tatggataat ggaagaattt tgcctgaggg
      361 tatgtgcctg ctttgcctat tcctgtataa ctagaatatt tataattcaa atacttatct
      421 ttaataatta aaaatgaagg aatattaaag acaaaaggta gagaatatta tgtacacata
      481 tgtaggcatc atgcattaaa tccc
//
LOCUS       KCLJ01000820             493 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 92042cal ultra-conserved element locus
            uce-1796, sequence.
ACCESSION   KCLJ01000820
VERSION     KCLJ01000820.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 493)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 493)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..493
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="92042cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>493
                     /note="ultra-conserved element locus uce-1796"
BASE COUNT          157 a           93 c           92 g          151 t
ORIGIN      
        1 ttaattgtct gcagatttat atgaagcaca ttagtaaaca tggagatatt agtatttcag
       61 aattcaaaaa aagcccagct gtgctggtga ctaaccaata catgaactga agctcacact
      121 ctgcaaggac ctttggttga cattcgattt tgaacctgcc agatgcattt ttgtgaacca
      181 gggatactgc atctttaatg aacaagtctc tactctttcc cctgttttta aatacaacac
      241 aagcagtgta gcactaggca ctgcaattgt caaagacaat tagactgaaa gcaggaaaat
      301 ttcacctccc tgtctcagtg atatgtagaa tgtcggcagt atgggtcagc cttgccacag
      361 agttgtgtga gaatatatga atcagtccta tagaatgtta aatatttata aaatggttct
      421 gtactacacc aaggttggga gcacattcat tccttgttgt tttataatag caaaagttta
      481 tttccaaacc taa
//
LOCUS       KCLJ01000821             613 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 92151cal ultra-conserved element locus
            uce-2868, sequence.
ACCESSION   KCLJ01000821
VERSION     KCLJ01000821.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 613)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 613)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..613
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="92151cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>613
                     /note="ultra-conserved element locus uce-2868"
BASE COUNT          202 a          101 c          116 g          194 t
ORIGIN      
        1 tgtgatgtga ggcattagta atttagcaat taatcattat gataaaggta atttattagt
       61 cagtcatcat gaaaaattaa aacaggcttg tcaacttaca attaatattt tgaattttag
      121 atttttgcta tttcccaact gactagaaat ataaaacatg aaacagatta gttgatgatt
      181 gctctatttc attttgattg gctaagacta agtgataaga ttgaagtcct tgctactgaa
      241 agccccacca gtacagaagc attaggatga aaaaagattt tcactcactg ggtggtctgt
      301 tcgctgccaa gtttttgaag tggctgcctt ttatcacttc tgctgataat cttccagttg
      361 tagcattata gaggaggcca atgaggattt ctggagctga gccatgtacc agagactgac
      421 aagaggaggt actttcactg caggacactt ctgacatgct catttgagag tcacaaccct
      481 ataaaagaga ttaaaagttc tgtgtgtctg ggaagtcaat ttttagaata atgcatagaa
      541 aattctgaaa gcaacttagt cacaataaca agttccattc aatcacccaa tatgaaatgt
      601 accttaattt gca
//
LOCUS       KCLJ01000822             506 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 92259cal ultra-conserved element locus
            uce-6457, sequence.
ACCESSION   KCLJ01000822
VERSION     KCLJ01000822.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 506)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 506)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..506
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="92259cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>506
                     /note="ultra-conserved element locus uce-6457"
BASE COUNT          189 a           73 c           81 g          163 t
ORIGIN      
        1 aaggtgttat atattgtcat ggtaattata atttggttat atgtacccaa ggtacagaac
       61 ccatacaagg tgatggcata aaagagggtc ttataaatga gactgtaggg catttaacta
      121 aacaattgca tgcagaataa agagcttaca taaaagtgtg tattatgcag atcttagaaa
      181 cctgtgtctc tgagaagaca ctattttgac cataatgcat tctgtcatgt gagataaaat
      241 gcagagaaca tttacatttc tcccactcac tgagcttcta tcacacggct tgcatttttc
      301 tcacatcaat aggcatcttt ttaaacatta tattcatgtc tgtctctctt gatggcaaat
      361 aaaattcaag aaataaaata ctttatgata aatatgttag atttaagaag cagttgtgat
      421 aaaatgttca caaaaaagat ttgttaaaaa taaataaatt taacaagact tgtacacaag
      481 ctcaaaatat attaatatat tgtaga
//
LOCUS       KCLJ01000823             557 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 92365cal ultra-conserved element locus
            uce-5133, sequence.
ACCESSION   KCLJ01000823
VERSION     KCLJ01000823.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 557)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 557)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..557
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="92365cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>557
                     /note="ultra-conserved element locus uce-5133"
BASE COUNT          186 a          119 c          108 g          144 t
ORIGIN      
        1 tttgtagaag caaaacaatt tagaactatg aattgattag tgaaactaat agtacagcta
       61 cagtactttc ctctccccac gggttttcag ttttaaaggg gaaaaattca aaaccaagac
      121 tgactgagac ttgcagctca ttaaagctgg ggtgatttcc actatacaga attctattga
      181 tctccatagt ccacagtaga caaaaaagtg tggtcaggga ggggatgatg gatgcctctg
      241 ccaatagcac tgaacaaacc tgttagctaa ttgctaccaa agacaattat ccccgcattg
      301 tttcataatg gaaacacatt acaaaactct aatatacaca cagggaaatt tgatgatttg
      361 actgcggagc catgtgcatt gaatctcatt gccgaaggcc agccaggtcg ctgctgtgag
      421 gggaagaaag tgtcagaata gaagcctgaa tatctcacag ctcattctgt aaaacgagtt
      481 tagcaactcc taacaacact gcaattcccc tgccacaccc atgtacaaca caacgcatgt
      541 atcttttaat gaaaatt
//
LOCUS       KCLJ01000824             803 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 92478cal ultra-conserved element locus
            uce-3078, sequence.
ACCESSION   KCLJ01000824
VERSION     KCLJ01000824.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 803)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 803)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..803
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="92478cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>803
                     /note="ultra-conserved element locus uce-3078"
BASE COUNT          270 a          154 c          134 g          245 t
ORIGIN      
        1 gcaagaccat gataatcaga attatttgaa gttgatattt gattaatgct ggcaatattc
       61 tataagtgat ttccactaga caacatctaa ttatttaatt atttcccatt attaatggaa
      121 tgaaacaatt caaaacaaac acctagaatg aatgttttgt gggaagctca taaacatcaa
      181 ttcatacgtg tagaaatctt actaaaataa tatcaagctg gcctgttgaa cttgaaaggc
      241 gtatttcatc ccaatcaatg caaaaattat ctataactaa ggcatgtttc tctgctgtac
      301 agttcagctg taatgatccc cacacactgc acttgcacat caattatgat aatcataatc
      361 acggtcgtta agctgaatgt tcattattat caggatgctg gtgacagcag attcaatcac
      421 cggctgcaat gggcaggcag tcacagtccc acccaagttt ctgcagacag cgttgtgcca
      481 cattaaatct acaatgtgtt ccacatccca ctccattcca aaagctgtag acggtaaagg
      541 tcaactttat gttctgtgca atatgcttag gttctctaaa ttaattcttt gcagtcctgg
      601 gtatttgtag ataataaaat cctgtttcgg gccaaaatgc ctgtgcaaat aatgaaactg
      661 agattcagtt gtactgtaat tcacctgtaa taaggcatca gagggaagaa tctatcagct
      721 atcacttcct gaattttaca aataagaaaa aagtaaatgc tgccattaaa gtcagttttc
      781 taaaatgcaa atgcaaacta att
//
LOCUS       KCLJ01000825             764 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 92589cal ultra-conserved element locus
            uce-2714, sequence.
ACCESSION   KCLJ01000825
VERSION     KCLJ01000825.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 764)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 764)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..764
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="92589cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>764
                     /note="ultra-conserved element locus uce-2714"
BASE COUNT          232 a          141 c          135 g          256 t
ORIGIN      
        1 tgtgtctgga taactaaatg ttttcttgct tttcacattt tgaaatatta ggtatatctt
       61 tcctatttac agttttcctg tccatctata agcttttggc aagatttgat acaactgtgg
      121 tataaggtaa taaagtaaag gcaagtaaag gagtaattaa tcaaaccaca taagtaagca
      181 agaataaaaa atgatgcaaa aatgacaaga atagcctaaa ctacttatgc tttggcacca
      241 ctgaaaactg accagagaaa aagttcatga atgtgctcca attaatctgt atgcacactg
      301 caatgctctt tagtttggtt catttaaatc tgaaattccc ttccctgttg atgtcagcta
      361 gttagccaag atggtgcatt actgttatga tcactgcagc gcatataatt tagatttatc
      421 tctttaggga ctcagctcca ccccctgcta gctaatatgc tcaccatgtt taatgatgca
      481 aaaaatttcc ctgagtaccg gttatttatc tttatcaggg gctgctttcg gctggctgtc
      541 agttatcagc cagaatattt gttcctaaat ggtttgtact catccatatt ccagggcaat
      601 tctgaggccc atattatcac tgatgtttgc aataaaagtg tttcagttct tcagatacac
      661 cttagtaata ctgatttatg agtctggact ggctgtattt ctgatgcagt gatatgaacc
      721 ctgaaatatc tataactgtc atggaagtga aatatctatc caaa
//
LOCUS       KCLJ01000826             629 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 92807cal ultra-conserved element locus
            uce-315, sequence.
ACCESSION   KCLJ01000826
VERSION     KCLJ01000826.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 629)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 629)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..629
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="92807cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>629
                     /note="ultra-conserved element locus uce-315"
BASE COUNT          213 a           98 c          130 g          188 t
ORIGIN      
        1 agcatttatg ccacaaatat atttcaaggt ggaaatattt aattagccca tctgcaagca
       61 taaatagcca atctacattc tcaattaatt tagtgaaaat tatgccattg accatttctt
      121 tactgcactg tctcagaagg gagaagggag agatattcgt tgcatcactg tagagcaatg
      181 agatttctgt aagtcgtgat ctgctggcat gtaataactc gatctgcttc atgcagacaa
      241 aatatattaa aagtatggac gagtgaagtt tgtgccccag ggagaaggca agataatgca
      301 ttgaaattgt tcagaggtag ttagatacct aatggtctaa tatgtgagct atgtgaggtc
      361 tggggtctgg ttctcataaa ttctggctag actgatcctg taatttcaag caaaggataa
      421 aagcgttaac cagagtcatc agtgttcaag gtccatgata ctggatatta ttcatgtaaa
      481 gattcaagaa aaacactaaa aggaaagcat atgtgtttat atgtgacaat atataaaata
      541 cgtgctgtat tccttgtgta atatgcacag gacctaaatg tctacattgg tatatgtact
      601 tgctaacaac tgaatagcca aaataagag
//
LOCUS       KCLJ01000827             524 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 92917cal ultra-conserved element locus
            uce-2716, sequence.
ACCESSION   KCLJ01000827
VERSION     KCLJ01000827.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 524)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 524)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..524
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="92917cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>524
                     /note="ultra-conserved element locus uce-2716"
BASE COUNT          162 a           96 c          111 g          155 t
ORIGIN      
        1 gggagggaac ttgcccaacc cagctgatgg caagaaatgg gtcagacgct ttaccactgc
       61 aacttagttg tgtgttttat ttattaggga aaggaacagc ttttacaggg acaaagagaa
      121 atgaaatcac tttcagtgaa agaaagaggc ctcattatag ccaccaacag cagttattga
      181 cagctacact tcctattaac aaggagcatt taagagtttg gctgttggat ctttggactt
      241 gatctaattt gctagcatta attagtttct tttgagcaca gacacttggt gctcacagct
      301 atagatttag aggactaatt aggacagaaa attgaacaga atggggtaag gcattaacct
      361 tcaaccatta ccagctgggg ctctgataaa gaccacagag tccaaatgct cctattcatg
      421 caaagagtac tttaatgaat atcaatttca gccaggttgc catatcttac aagccctgtt
      481 ttgattttga ttctcttacc tggtagagat ttttatgtat agat
//
LOCUS       KCLJ01000828             718 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 93021cal ultra-conserved element locus
            uce-5961, sequence.
ACCESSION   KCLJ01000828
VERSION     KCLJ01000828.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 718)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 718)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..718
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="93021cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>718
                     /note="ultra-conserved element locus uce-5961"
BASE COUNT          221 a          119 c          128 g          250 t
ORIGIN      
        1 tttaattgaa taaatatatt acacagcagg gcagattatt ttctttgtgg ccttgctgtt
       61 gcaatttgag aacagataca atttccttca gctgatgaag aaagcaacat ctgttcttgg
      121 tttcctgcag ctttccttca gacaatgcat ttagatgcac aatttgaatt ccttcgtaag
      181 aaatagaaaa ttaaaacttt gacccctcct tcaaagcagt ggttacactg tgacaacagt
      241 gggttgagct aaattcagct atgtcaggca agaactataa aagtagatag attgccctct
      301 aagcttcact ttattggata ttgtaattga catatagttg tcatttataa tcatctgtcc
      361 attcctgtga gttgggagca gtaaagttaa ttgtggctgc tcatttgcat taatctcacc
      421 tctgaagggt acagtaaccc attaatatca tgtcatgatg aattatcaca aataacattg
      481 aacatattga ttaatgatct ctgagatttg tatctcgtta aaacattttg ttagctcttt
      541 aaacttttaa gcagacagtc aatgtatgca ggagaggttt agagatcacc cacgaggtga
      601 tgaaaagtta tggcacacat tttgggtcac taattaaaaa ttgttttttc atattcattt
      661 ttagactgct ttttccttct aaagtataga gcttgaaggc taagaattgt cttattat
//
LOCUS       KCLJ01000829             723 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 93131cal ultra-conserved element locus
            uce-733, sequence.
ACCESSION   KCLJ01000829
VERSION     KCLJ01000829.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 723)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 723)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..723
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="93131cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>723
                     /note="ultra-conserved element locus uce-733"
BASE COUNT          236 a          111 c          130 g          246 t
ORIGIN      
        1 agcagctctg gtgtccctgt gtaacaccag tagggaatag tgatcctctg gcttggtgtc
       61 aaggaaaggt gacagaaagc ttggggattt gtttatgaaa gtgtgcggtt tggaattttc
      121 tttccataat tgttagccat aatgtgtata agacctccac cttgatatga ttcctagcag
      181 attagggata ttagataatt tccttctatt tattgtacta ctgcactgta ttatctttct
      241 atcactcaga taattactaa ggaaatctac attaattttt tttggctagc acaaggaact
      301 gctaaacact ggcatgatgt attgatgttt tacacaacaa aagttttcct cctgtcattg
      361 tacaataaat aaaaagatat ttatcaaaat gcaaagcctt tcatggattt taaagaacaa
      421 agcaaataaa acacaagatg agcatggaag caaaacctag aggcttcctt aactgaacaa
      481 aattaaggac tctgaagcct cgagtactgt acatattaaa cactcacatt caagtaagat
      541 gttgtttgct aaattatgaa tgtgtgtaat taaaatctag tggctgtttc tatgaaagat
      601 ttacaatgtt atttcatcgt ttgtcatggc taattaacaa tattagatga agtttttctt
      661 cttcaaaggt ctgatttttt ctcatttatt tatgtcagaa gtgataaaca gagtagttaa
      721 aag
//
LOCUS       KCLJ01000830             689 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 93231cal ultra-conserved element locus
            uce-649, sequence.
ACCESSION   KCLJ01000830
VERSION     KCLJ01000830.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 689)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 689)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..689
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="93231cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>689
                     /note="ultra-conserved element locus uce-649"
BASE COUNT          193 a          163 c          117 g          216 t
ORIGIN      
        1 ggccatgtga tgcgcaggga ttctgaaatg cttcccctca ttcacagttc tcctactaat
       61 atcctgggca ttattagtag ttcacaaagc cagcacattt tctttttgat aagtgtccct
      121 gttctgccct cctttgtcca cctccaaatg cctcctggta cttacaaaga ataaagccgt
      181 gctgcctaac tagcctggcg cattggattg ctacccctac tcactcggtt gcctgtaagg
      241 ggatgtactt atatcatgaa agataaatcc cagctagaaa tacaggtccc tgacaaccta
      301 atcactgaaa ccctgtcaag taacccctaa ttttaaagca agtggttaat tcccagcaaa
      361 ttgatttatg cactgtttga ggtttggtga gttgtgttgt tcatctgtta ttaccacgaa
      421 ctcagctcag cctattcatt tagaccactg acacaacaca gtgcatctcc caagaaaatt
      481 tcctttgtca gcacatctag aatttgctaa ttaaatcaac gatggcatta ttcactttct
      541 gaaaaaagca acttctctct cctgccttaa taaacatgtg tgtgcataaa catgacacac
      601 aagcatggtt ttgtaatgtg ctcaaaactt tgaattattt ttattaattg ttttagtcag
      661 accagataat ctggtcacct cagtagatg
//
LOCUS       KCLJ01000831             740 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 93342cal ultra-conserved element locus
            uce-2418, sequence.
ACCESSION   KCLJ01000831
VERSION     KCLJ01000831.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 740)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 740)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..740
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="93342cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>740
                     /note="ultra-conserved element locus uce-2418"
BASE COUNT          219 a          150 c          122 g          249 t
ORIGIN      
        1 gataattggt cttgacattt tcctggaaaa agaagaaaac ttccttgttg ctgttccaga
       61 cacagcatct ttactaccta ctgataccct ttctgaggtt aatctattgt aaaattagat
      121 tgtaaaaatg gacacagttt ccacatttac atgccagcac tgaaggactc gtggaataat
      181 tcaagtactg cacaattcct tttgcagaaa tcactgcaaa attcatttgg taaaccatgg
      241 aaattagcat ggattcttcc tcagttcaat tcatctttca gaggctgtta cccttcccaa
      301 tctgattgcc ttaagaacac agattgtctt ctcttgatgg tgaaactgct ttaatcccct
      361 tttccaaagg tcaactaatc tccagtctta agtgcaatag atgcaaatac agttctcttg
      421 ccatgttcct tctaatttaa ttctctccta agctttcatg tataaaccta gtaatggatc
      481 aagtttggaa ggggtcaaaa ggtttctgtt ccagtaaaat ttaaattgac atcgcatact
      541 gataatggtt tgctctactt tactataaac accagctact actctattgg gatatcattt
      601 tgtgcaagaa ggcagtgttc caaacagcag cagaacatat tctttgtttt tctgcagaag
      661 ttgatgactg caacctgtga tacaaaaatg cataatttta aattcactgt tgttgtgcag
      721 catctttgac caactggttt
//
LOCUS       KCLJ01000832             748 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 93450cal ultra-conserved element locus
            uce-7287, sequence.
ACCESSION   KCLJ01000832
VERSION     KCLJ01000832.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 748)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 748)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..748
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="93450cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>748
                     /note="ultra-conserved element locus uce-7287"
BASE COUNT          263 a          108 c          118 g          259 t
ORIGIN      
        1 taaataaatt ctaattcttg tcacctacta tctgtacagg aagatttgag acattactcc
       61 taattgagat ttttactgaa tatcttttaa agataaattt gttttattct ttcacccact
      121 atttaaaagg atttttcact tttttatctt ctaaaggaat tgtcaatgag aaactaaaac
      181 tgcatagact atacattaaa atcactttag tttttaagct gtcatgaact gtttcaaaaa
      241 atgctaagtt gctattgttt aatgtctgtc attttataat gctttagaag ttatctatcc
      301 tgtaaaatta ttaactgatg ctaaaattgc cttgtaagta ttaggacaat agcaattttg
      361 taacagctgg gacactgcca atgtaagata agtacatttt gctctgtaga ttcataaagt
      421 gctttgaaat ggtttgtaac tgatggatgg atgcattttc taagtgtaga aagcaatatt
      481 ttgtagaggg aaatgacttg aaagctgaca cacatgcatg caaatgccat tctcttcagt
      541 aagtaatttg ctttttcttt caaaagcata aatggcatag ttagacacat tattttgtat
      601 attgcacata acaatacaag atgcacaaaa acagcaagta caaaacattt catattgata
      661 gaggaaccca tggctgtagt atatgattag cataaatgta tacacactga agaaatgcct
      721 tcaggattaa aaagtaaggc tgaaaaca
//
LOCUS       KCLJ01000833             394 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 93560cal ultra-conserved element locus
            uce-6198, sequence.
ACCESSION   KCLJ01000833
VERSION     KCLJ01000833.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 394)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 394)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..394
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="93560cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>394
                     /note="ultra-conserved element locus uce-6198"
BASE COUNT          132 a           73 c           70 g          119 t
ORIGIN      
        1 aaaaatagca catcaagcac cttgttaaat taactctttc attaataacg tggctccagt
       61 ttactcttgt gtgaagccca taaacagttg ctaattagtc acatgtggat tcaaatgcag
      121 acttgtacgc cataaaccaa cactgaagtg tataagaaac tgtcagtcag atcaaaagtc
      181 aatccaaaat catcccattt gcagagttga gatgctgtca cagtcagtta gcccaaatgt
      241 ttaaaacagc gattttattc taattgagca tgagttgaaa ggctgcacac tttgatgtct
      301 ctgcttttat catttgtata tagctaaaaa cagcagggtg agttctctta gaaataggag
      361 acattacttc ttattgaaaa tatacaggta ggtc
//
LOCUS       KCLJ01000834             471 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 93665cal ultra-conserved element locus
            uce-4051, sequence.
ACCESSION   KCLJ01000834
VERSION     KCLJ01000834.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 471)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 471)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..471
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="93665cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>471
                     /note="ultra-conserved element locus uce-4051"
BASE COUNT          165 a           95 c          112 g           99 t
ORIGIN      
        1 atcttttgac tgcagtgact cttctctcct gagatgtatt acatttttta aagtcagtga
       61 aaaataaaaa attgcaaaat atcactttta atccttggac taaaaaatgg ttgaatcctc
      121 cagaggccag tcagggccag aaacaaaggg ggagggcaaa gggaaaggga gagagcaaag
      181 agtggttcgt ttcaaatagc aacattgtcc aaaagggtga aagggaacag atggccatgg
      241 agaatgcagc ctcaaagccc taaagaaaag ggctattttg acagatctcg ctgtttccta
      301 ttcaagcatg aacattctgg catggagagt taagacgata caaggaacaa cctctgttcc
      361 cagcaactga ctatgggcaa ctggcctctg aagctctctg agaaaaacaa catgagacag
      421 acagacaaac agatatggca gcaagcccag atcccagcca ccaggaaagg g
//
LOCUS       KCLJ01000835             804 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 93774cal ultra-conserved element locus
            uce-2341, sequence.
ACCESSION   KCLJ01000835
VERSION     KCLJ01000835.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 804)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 804)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..804
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="93774cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>804
                     /note="ultra-conserved element locus uce-2341"
BASE COUNT          223 a          195 c          175 g          211 t
ORIGIN      
        1 aatcagcatt ttcaatgaaa ttttgtttcc ctgtggcatc ttgaacaggt tttgaaacag
       61 acttataact ctgtggcaca gcagctatgc agcttgaaat ccaagtagca ctcaatttta
      121 ttatttccta tctgtacaat aagcttccca gacgacgtgt caacattttt ggtgaagagc
      181 ttgaaagact tctgaaaaag aagtatgaag ggcactggta tccagaaaag ccatacaaag
      241 gatcagggtt tagatgtatt catatagggg agaaagtgga cccagtcata gaacaagcat
      301 ccaaagagag tggtttggac attgatgatg ttcgcggcaa cctgcctcag gatcttagtg
      361 tttggattga cccatttgag gtttcatacc aaatcggtga aaagggacca gtgaaagtgc
      421 tttatgtgga tgataatgaa aatggatgtg agttggataa ggaaatcaag aacagcttta
      481 accctgaggc ccaggtgttc atgcctatta gtgacccagc atcttcagtg tccagttccc
      541 cttctcctcc ctttggtcac tcagctgctg tgagcccgac cttcatgccc cgctctactc
      601 agcctttaac cttcaccact gccacatttg ctgccaccaa gtttggctca accaaaatga
      661 agaacagcgg ccgtggcaac aaggtcgccc gcacctctcc caccaacctt ggcttgaatg
      721 tcaatgacct gttgaagcag aaatccctct cctcctccat gcactctctt tatgggctcg
      781 gcctaggcag caacagcaac agca
//
LOCUS       KCLJ01000836             591 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 93887cal ultra-conserved element locus
            uce-7811, sequence.
ACCESSION   KCLJ01000836
VERSION     KCLJ01000836.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 591)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 591)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..591
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="93887cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>591
                     /note="ultra-conserved element locus uce-7811"
BASE COUNT          171 a          126 c          118 g          176 t
ORIGIN      
        1 agaaaccaaa gtcaggcgcg caattggagc tggattccat cactcaccac tcagtcacaa
       61 cttcttttga attcctcggc tgccctgagg caaaggctca atgttgatac tgagattaat
      121 cccaaaagag ccccttattt ctcagcagag aaattaaagc ttgccagttt tcctttcacc
      181 tgtccttctg acagctctgt cagtaatgat atgccttcta catggtataa tccccatcct
      241 atggtaaaga ataatttatt aagaaattaa ggggcttagc tcctctctgt cgggttggtc
      301 ttcaaaagtt ggctgatagc agagacagca tgattatcaa tgaaaaatta tttaacagta
      361 ccttggggct tttttagaca aagcctaata agtcacatgg gtagatatca atcaaattta
      421 tcccccttag atttagtaaa tattccccga agttaagtca aattatgttg attatatggc
      481 tcctctcctt gcagttcagt gtgactgtgg ggcacagtcc tagtttaggg agaagcatat
      541 ttttagcagc acagcagcgg cgtgacatgt ttgctaataa agctgacaca g
//
LOCUS       KCLJ01000837             692 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 93993cal ultra-conserved element locus
            uce-7514, sequence.
ACCESSION   KCLJ01000837
VERSION     KCLJ01000837.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 692)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 692)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..692
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="93993cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>692
                     /note="ultra-conserved element locus uce-7514"
BASE COUNT          202 a          125 c          118 g          247 t
ORIGIN      
        1 atatccatag acatgatcat ttagactgtt gattgctttt attttatttt gtctgtgctt
       61 tgagtctctt aatccatatt tgcctactgc atttcaaaag ggaatcaaat tggttttgtg
      121 gtgcattaat gttttatgca atattccata gagaacatta aatcaaaata aaaaggttga
      181 cctctaacac ttacacccat ttcttatgtc aaactggaag atgttgaaag ccttatatgg
      241 tcgtaaccct tctatctaac tgtgaccctc cttaacatta agcaggtgac tcgattaaac
      301 ataaatcagg cataaaatgc cctgcatgag gcagcacagt gaatcaagca aattatcaaa
      361 tggcaaaact cgttctgtgc tctgggcaat gtaagctgcc agcacttata catcaaaact
      421 tcactcagtg taagattgat tttattttat tttgtttatt ttaattccct acagcaagct
      481 gtgttagttg tgtaaaatgc tgtctgcatc attacgttcc taagaaatgc tttccttgtt
      541 tagcaaaggc cagttgcaat cttaagcaac gtaatctatc taagactgct ctctgtagtg
      601 gattctagtg tggttgatat tttgtacagt actagcaaaa cttaagcttc tgtgattgta
      661 tagatctgtt tgtttgtttg tatacataca ct
//
LOCUS       KCLJ01000838             451 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 94104cal ultra-conserved element locus
            uce-4063, sequence.
ACCESSION   KCLJ01000838
VERSION     KCLJ01000838.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 451)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 451)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..451
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="94104cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>451
                     /note="ultra-conserved element locus uce-4063"
BASE COUNT          150 a           76 c           80 g          145 t
ORIGIN      
        1 tactttaagc aggtgttaca tacagattat gcttaaggaa tctaaatagg gattgtagca
       61 catggtaaag atttagtaaa tacttttcta gtccaaaatc aatgccattg attgtcatta
      121 aagcagcaag ctaatgaagt ggtttctaat tttcaggctc ctgctggagt ctgctctatc
      181 tcttcttttt ccagttaaga gcatcattaa atggtaagag caaacagcat attgagaggc
      241 caagtgtttt attaattcat catcagaatt atctcagcac attaatatta atagcctcaa
      301 attggatttc atttaggagg tgaaataaat atgctgatag taaaagccta catagccaat
      361 gaatcttttg aaatggcact taaacatagc aatactcaca ccagatttga taagtcagac
      421 ttcctttagt gtagtggcac cttccaggta a
//
LOCUS       KCLJ01000839             584 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 94212cal ultra-conserved element locus
            uce-3174, sequence.
ACCESSION   KCLJ01000839
VERSION     KCLJ01000839.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 584)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 584)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..584
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="94212cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>584
                     /note="ultra-conserved element locus uce-3174"
BASE COUNT          136 a          140 c          139 g          169 t
ORIGIN      
        1 ggctttccag cttcccccag tgacattgtc cagtcttcac agtgagataa tattgccaga
       61 aatccagtct aaaatgaatt ggcttcatcc ggtaagagca aacagggggc agtttcctgt
      121 tgatccttca ggagttgtgg ccatacctgt cactttggtt tttgcacact gccacctagc
      181 cctgtccctg gtccaggctg agccgttgtg ttttggtgaa cagatgaagt gcttagacat
      241 tcatagactg agacgccaca aattcagttg ggttctcctg tagctctaag cagatttctg
      301 ccctctgagc catgacagcc ccggctgggg ctctgaatgc tgatggcagg gccttttatt
      361 attaatcagg aattcatgtg aattaatttt cagtggaggg attggaattt cacatcataa
      421 attcaatgaa ctgaaactgt catgtgccac acggtcgctg cagctgagct ccatcctcct
      481 cctgctgatc acaggttaca ggagggtcca gggcagtcct gcagctggag tctgttcatt
      541 aatgaaagct cagatcacat gtttgcaaat tgctttgttt ccac
//
LOCUS       KCLJ01000840             653 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 94322cal ultra-conserved element locus
            uce-1358, sequence.
ACCESSION   KCLJ01000840
VERSION     KCLJ01000840.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 653)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 653)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..653
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="94322cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>653
                     /note="ultra-conserved element locus uce-1358"
BASE COUNT          242 a          119 c           94 g          198 t
ORIGIN      
        1 aaaaacacac aactaaacaa aactcacgca acaaacatct gagaatctgg acacttcaca
       61 tcagtgttta gaagtgtttc ataaatatct taagacaagt gtatcaaaac cttggcatgt
      121 ttaatttttg ttttactatc agaaagttat ggctataatg ccgggtctgc ttaatttgac
      181 ttaagagttt aatatgactt aaacattaaa agctcacact accccgaaat atataatttc
      241 acgcatacgg tgacattcaa cattcaagtg ccagtgtttt tgtactgtct tttggtcaag
      301 tttctttaaa ctttcaaaga atcactttta ggcttacaaa aataaatatt tgtcaaaaat
      361 gttcaataaa tattacacaa aactagcagc aaaaagtatc tagaaatctg tcgtgtgcaa
      421 atagttttct tcccagctat cattcccatg gtcccaaata agttttagaa tctatttcct
      481 tctccttaaa caagctgcgt tcaatctcca agagacaaaa taagattgga agttaaggac
      541 acgcacacaa gacatatata aaattctctg aatgtgcaat aaaagaagta ttttgtaaaa
      601 agttatgggc aaaatgtaca agggcctaaa cctagacttg aaatagcacc ata
//
LOCUS       KCLJ01000841             341 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 94426cal ultra-conserved element locus
            uce-7719, sequence.
ACCESSION   KCLJ01000841
VERSION     KCLJ01000841.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 341)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 341)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..341
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="94426cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>341
                     /note="ultra-conserved element locus uce-7719"
BASE COUNT           98 a           54 c           73 g          116 t
ORIGIN      
        1 tgttgcagtc caaaaatatt tgttttaaat gcattctttc tgaattatcc cctctttgtt
       61 ttctttttct aggctgaggt tcagctatgc tatctggaag cacaaagaga tgctgttgaa
      121 cagatgtcct taaaactgta cagtgagcag tacaacagta gtagcaagcg aaaggaagag
      181 tttgctgata tgtcaaaagt tcacacagtg ggaagtaatg ggtagggaac tattcttttt
      241 gttgttttat tctcactgat ctgttatact ttttctacta gttaaccagg attaggccaa
      301 gaggcaggat atatggatgc ctggataatt tatccaaatg a
//
LOCUS       KCLJ01000842             539 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 94532cal ultra-conserved element locus
            uce-3501, sequence.
ACCESSION   KCLJ01000842
VERSION     KCLJ01000842.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 539)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 539)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..539
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="94532cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>539
                     /note="ultra-conserved element locus uce-3501"
BASE COUNT          190 a           93 c          106 g          150 t
ORIGIN      
        1 aaagtgatct tgaaggttga caatcacatt taagacaaat atagaaatct aaaagaaatg
       61 cttacaagca attctgcatt ctgggcaatg atttggtttg aaaatgcatc cagttcaagg
      121 gttaaatgaa agcaaaagca atcacttcat ccatgttttt gaagaaaata aaccagcttg
      181 atgtaagcta aatgaagggg gtctgtgact taaaaggaat ggacagatag agaaaaaggt
      241 cagaagatta aattttccct aagggaaaag tcattctttg gaatcattaa cctccttcta
      301 ggtcactact gaaaaaaaca gcaggaaatc ctactgctcc tggaaagatg ggtgcatcgt
      361 ataccaccca ctgacctagc aactctatgg caaacataat tgtgcttaca aattctcctc
      421 caggcatgct tggttttact atgcccattt taaagcaata tgatctttta gctgaactct
      481 gaagtgtttc tataaagaca atattccagg ggcttgggat gttaaaaaga aggattgct
//
LOCUS       KCLJ01000843             747 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 94640cal ultra-conserved element locus
            uce-274, sequence.
ACCESSION   KCLJ01000843
VERSION     KCLJ01000843.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 747)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 747)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..747
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="94640cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>747
                     /note="ultra-conserved element locus uce-274"
BASE COUNT          208 a          147 c          164 g          228 t
ORIGIN      
        1 atcaattttc catttaagtg gaagaggtta aacaatttac agaagtctac tgaaacattt
       61 gctccaagga tagccgggca gtttcttatc ctctccctgc ttttcacttt cttgtgtcgg
      121 tcgaggccag ggtttattgt tttaggcttt tctgaacata caccagtatt tacactggat
      181 tgaaagcatt tgcttccaat gaaaatcttg tcttagatta cagcccagca gtgtaatttc
      241 cctcccagat gggagtaaag tagcagtatt tgcctaaaaa cagtaggaag aacaaactat
      301 gcattaagcc aaggctgttt ttggcttgag ctaatgatgt aacagaaacc tttatttggg
      361 ataggtcact gcccgggatt gaaggaggtg atctggctcg cgcttgaaag gtttctccat
      421 tgtatctaca taagtcttca cttaaaaaat cctgttccta atgcttctgc tttcatacag
      481 cagaaataaa caggaaaggt tctggggagt gttataggtg gaatgcagaa agcttttcct
      541 cccctaatgg aggatataat tcaggtgccc tggaggcatg ctttcaggaa ttcttttgcc
      601 cgaggtaatg ggaagctaag gctgcttgaa ggccttgatt atctattgat gcacaaagct
      661 ggaaaaaaag tcatctccct tggattatgg tagatatttc cataaattat caatgagtcc
      721 tcctcccatc aggcatgagg caatgcc
//
LOCUS       KCLJ01000844             399 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 94752cal ultra-conserved element locus
            uce-5872, sequence.
ACCESSION   KCLJ01000844
VERSION     KCLJ01000844.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 399)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 399)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..399
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="94752cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>399
                     /note="ultra-conserved element locus uce-5872"
BASE COUNT          124 a           78 c           96 g          101 t
ORIGIN      
        1 atgtctctaa aaattgtggt gtgacaccca actgatatcg agcgtcctat ttataatgtg
       61 ggccaagcac catgctgtaa accagttcct atcatgatga tcagattgag aatgaaattg
      121 catttctgtc aattactgag ttggcaactg ttcaatatat cttagcagca agatgaagag
      181 cggcgacggc agctgagaga gagagctcgt cagctaatag cagaagctcg atctggagtg
      241 aagatgtcag aacttcccag ctacactgaa atggctgcag aaaagttgaa agaaaggtca
      301 aaggcatctg gaggtgagct gaggaacctt gtatcttatt cctatggcaa cctagaaagg
      361 gtgtcacttt tactcgcact tcaaaactca tcaggtgaa
//
LOCUS       KCLJ01000845             468 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 94855cal ultra-conserved element locus
            uce-3378, sequence.
ACCESSION   KCLJ01000845
VERSION     KCLJ01000845.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 468)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 468)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..468
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="94855cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>468
                     /note="ultra-conserved element locus uce-3378"
BASE COUNT          165 a           73 c           77 g          153 t
ORIGIN      
        1 ctagttgggt tagagcaaat attgtatttt aaaactttat ggaactaatt tatagtgtag
       61 ggcaggcaca gacttgatct cctggcagca aaattttatg tttccatttc agcaatactg
      121 cctaacacaa taatatcagg ccagcaaatc ttaaatataa gttaagctaa catgatccat
      181 tgccttataa agcaaaagta ccctgtggag tcatgctgaa tatgccaagt gatttttcaa
      241 aatttaatca tcctaaatgt cagataaagg tgcttttgct gtcattcttt aaaaccaggc
      301 cgagtgtgcc ttcaagttat acagaaaact gttcgaaaat agctatgtta aaatattaat
      361 ctgcaatgta aggaaggaaa tattgacttg ttttagtgaa aaataaagaa ttgtataata
      421 aagatcacca gttttcatat caatatagat attactgttt ccttctaa
//
LOCUS       KCLJ01000846             775 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 94960cal ultra-conserved element locus
            uce-663, sequence.
ACCESSION   KCLJ01000846
VERSION     KCLJ01000846.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 775)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 775)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..775
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="94960cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>775
                     /note="ultra-conserved element locus uce-663"
BASE COUNT          229 a          141 c          151 g          254 t
ORIGIN      
        1 ttccagaatt tcttaataca aaacctacat ctattccctt acttaattaa caataccaaa
       61 ctcaaccaaa tcaaaccgga tacttgattc ttccttcaca gaaaatattt tacccattaa
      121 tgagaagttt tcttatataa aggaattcaa tttttttttg attggcgtta gactcacaga
      181 cagacagaaa taagctgcca ttcttccatt tgatagccag acgctgccag ttgttgctag
      241 ggcagtcatg ctgttaaatt aggtctaatg aacgagtaat tgctttaggt atagtgaacc
      301 atttcaaaga aaacaaggat tctaattgat ttgcaatttg tttggcacat tgcattgtct
      361 ggggctattg attagtcttc tggatttcac actgcatgtg tttcccttta ttaagggaat
      421 aacaggttac tgattacttt ccttctgggt ttaatgtagc ggttaatgtc tactttgttc
      481 ttgtgtcatg tcacaggcaa ggaaggaata atatgcaagt gggtggccct ttgctaagaa
      541 actcccctgc tgctttgagc tgtgtactct aagacatgct gaaaagcaga tcaagagaaa
      601 gggttagaat agcaggactc acaagttatg gcctgagtca ggctagaccc aggctaaaac
      661 ttggctttcc tttactatca aagcacaaaa caagtggttg gcagtagatt cgctcttgtt
      721 tgattagatg tctctaaata aggaagttta taatatttgt cgttttgctg caaga
//
LOCUS       KCLJ01000847             818 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 95073cal ultra-conserved element locus
            uce-1547, sequence.
ACCESSION   KCLJ01000847
VERSION     KCLJ01000847.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 818)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 818)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..818
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="95073cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>818
                     /note="ultra-conserved element locus uce-1547"
BASE COUNT          248 a          164 c          119 g          287 t
ORIGIN      
        1 aatatgctct aatcctctga aataatccca aattaaaatc gctttaaagc atcctgaact
       61 gcctgctttg ccttcctatc tggatataca taaatacagc tatttttatt attcagatgg
      121 aatatttact atttgatagg atacgggttg gttttttttt acctctgaga cattccacag
      181 atgctaccca acttccccta acaatattta aattgccttc caaagcttct ctaaatattt
      241 gctgtgtatt tagcatgcct aagatttgcc cgttatccca aagtcttttt gctgtaaatt
      301 gcaattttac aacttcatgc ctgtgatata ttttgacaaa gctctgctga cactctctat
      361 tggcctccaa agacaaaata gctgatactc catgagccac cagagaactc tcaatttgtt
      421 gtgagacggg ctgctacttt gccatcctca atctgcatgg agaaagatta aacattcaat
      481 ttgttacttg ataggccaca aggttcacca cttaccatac aaatggaaaa cattactgtc
      541 attcctcaac ttgcttgcct gagtatttta ttatttgtaa tatttacttc agggaaatta
      601 tgattcatgt catatttatc ttcatgaaaa atgagcatct aaatggaaat caccttttga
      661 atgtaccagg atatagtgta atactaatat gcttcatgaa ctataaaatt tagtcacagt
      721 gtatggatat attatagcat gactttaata ctctcacatc aagcaaattt tctctgtgtt
      781 aagctgatac tctgagacct gatttcagtt tgataatc
//
LOCUS       KCLJ01000848             745 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 95184cal ultra-conserved element locus
            uce-2005, sequence.
ACCESSION   KCLJ01000848
VERSION     KCLJ01000848.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 745)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 745)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..745
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="95184cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>745
                     /note="ultra-conserved element locus uce-2005"
BASE COUNT          239 a          130 c          149 g          227 t
ORIGIN      
        1 aaacataaga agaagaggtg gctgaaacaa gcaggtgttt atatctgcac atatagacgt
       61 gtccattaaa agtggagaaa tggcttctgt gctctgtgcc ttgctgtgct cacctgagga
      121 gtaggagaat atttgccctt cagcacctga gctgccacct gcatttgcca agtatctgct
      181 gacagctgtg ggacctgtta tctctcagaa agaggtaaaa ataacaataa accagggata
      241 taacaatttt aaaaccaaag ctttttctct cttttttcct cactctgtct ccaagtacac
      301 ctttccagct cattactgca aatcatttga attccagcac acaatgtcac ctgcactgta
      361 atctgattac tttatggagg aattagtatg tatatttaat gtagaaaggt tttaatcttg
      421 atgaaaataa tcctaaggaa ctgtgatagg gctgctcata tgtctggcag atatgccagt
      481 aacatgctaa taaatgacag ctgatttatg tatctggatt cttttattta taaaaatagc
      541 aagtggactg atttttgata ttaataatac aagtgaatcc actttgatta gacttctgta
      601 gagagctgtg catattcggc attacaatta aatcttatga tgtggaatgg gaatgacatg
      661 ctaatgaagc aagccagtga gcctgaacca agaatgtcca acatcattat gggatatctt
      721 agatgaagag taattataag aggaa
//
LOCUS       KCLJ01000849             810 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 95293cal ultra-conserved element locus
            uce-4819, sequence.
ACCESSION   KCLJ01000849
VERSION     KCLJ01000849.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 810)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 810)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..810
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="95293cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>810
                     /note="ultra-conserved element locus uce-4819"
BASE COUNT          202 a          191 c          174 g          243 t
ORIGIN      
        1 gcagggtgtg ggagctccac gggctgtctg ctctgcaaat gaagccacat aatatctcac
       61 ctgcccctac cgtgggacat ttcattgtgt gaccttttga aatgtacata aaattctgga
      121 gatcgtctcc tctcctgagg gcttctgtag catgaaactg aaggtggcct cacagttggc
      181 agaaagtgtg tggggctttc tgtttacatt tatttgtgta cagacactgg cttgtttgct
      241 gctctaaatt actgccctct gcattttaca tgcactgctg tttttttctg ataaacatga
      301 tgagttgaaa aaatccttcc atgtcaattc tgcagttcat attcatgctg agattgtatc
      361 taattttgaa aatcttcaca cttgtgccct gccatcatgt gtaatctttt atgcatggct
      421 acctccactg ctgctgaagc agttgctatg cgacagatga acctgctccg tggggccctg
      481 acattagtaa aagcaaattg accacaggag cactaatcta gcatgaaaag cagttggtgc
      541 cgtgcatttc ctagagaagg attacctaat caacaagcaa aacctccttt taaacgtgag
      601 ctgaattacc tgggtctgga tttccccgtt tcgcaccttt ttgctacacc aaatcaccct
      661 gaagagtgaa gcccaaaggt gtgttactca agaggagcag ggactcacct cggatcagat
      721 tcttcagctc tcaccctggc ctgctggcaa atttgtcacc tgggctgata gttgtaactt
      781 ctttctccaa ggttaccaaa aactggtaat
//
LOCUS       KCLJ01000850             503 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 95403cal ultra-conserved element locus
            uce-6753, sequence.
ACCESSION   KCLJ01000850
VERSION     KCLJ01000850.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 503)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 503)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..503
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="95403cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>503
                     /note="ultra-conserved element locus uce-6753"
BASE COUNT          152 a           95 c          117 g          139 t
ORIGIN      
        1 taacatctac tgcccatgct gaatgtatac ctgcaagcac ttaagctgca gtttttcagg
       61 ttctgccaca ctgagattct gaggactccg cccaattcag tttctgattg tttacaatct
      121 cctgctgtgc ctgcaatatg cttgaattgt acttaaaaca cataaatctg ccttcaaagg
      181 cagcttggga ggcaaaagtg tggctaggga attttaaatg gaagggacaa gcaatggcta
      241 caaagagctc gctttttagt agtaggtgtt gcagtttgtt ccaattacag cacgcactag
      301 agtgtgaaat gttcatgcca atctaataaa aggaaaaagt acacgcaatg ctgaaattaa
      361 cacctttgga caagcttctt tacccagcaa gggcagctga ggcaggttta gagaaaagca
      421 aacataaggg gttgtgggaa tctgacttga taattggaac cttccttggt ggtcgaggag
      481 aagaatttaa gagtatattg cat
//
LOCUS       KCLJ01000851            1230 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 95514cal ultra-conserved element locus
            uce-564, sequence.
ACCESSION   KCLJ01000851
VERSION     KCLJ01000851.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 1230)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1230)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1230
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="95514cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>1230
                     /note="ultra-conserved element locus uce-564"
BASE COUNT          360 a          269 c          213 g          388 t
ORIGIN      
        1 ttaggttgat aattagattt ataagccaat atcttataaa tggctaaaga gacctctgag
       61 acaactagaa acaccaagtt cttccaatgc ttacagggac aaagctgctt ccgtaacaaa
      121 atcatttctc cctctcagag aagcaatggg caagtacagt tacacaagag ggaagtgaag
      181 ggaaggtcac agagctatgt ggtacaaaaa atgccagaaa taaatgctga tcaaaaaagc
      241 ctctaatcag ttctaaattt cttagacagt ttgctttctt gctgcaccta gaaatgtgtc
      301 atttgtctat taaaaaacat agcagcttca ctggctttca ttggcctctc cccgtttaat
      361 gtctctaact tcatgccatg ttcttttcct ctttcagcac ggctgagcaa ggctgacagg
      421 cggattcctt tgcttttcag ggtattaaag ccactttccc gctctgacag cctgttctac
      481 tctgccacct tatagctctg gcttcacact tctctgggca gccactgctt cttgacagac
      541 cactgtcact tcccatcatc ctctctgtat atcctgttct ctccccctca gcacgcatcc
      601 cgactttcca accaatgcaa ttattttttt tgacaagcca tccatcagct ttaactttaa
      661 aagcactttc cgctgatatc cattgttaaa tcccttgctt tttatggagc ttgcatgaga
      721 gaatatgata tcagacattc aaactaccaa accatgtaaa tttactttgt tctcagctat
      781 gtttccaatt tcacgtccaa tttttcggta cattatgcgt agttgttgtg cttaatatga
      841 tgttgtcaaa tcccattaaa gttcactgca ttgcacggct ttaaaaacag gttacaattt
      901 gcattctata aagaaaggaa ggagtgcagt ctgaagtcaa gctgaatctt attaaaatta
      961 tctgttcaat tgttacattt gtagatggag taattttgag gcattagctg agacacatat
     1021 gaaaatgtca gtgtgccaac taatgacaat gaaagcaaaa ggaatatatc tgtgaaactc
     1081 aataaagctc ctttgctggt gacataaatt tgatgataat ccgaggaaat gaataaggga
     1141 ccatccagtt tgaataggaa ttaccttttc tattaaatca ctttgctgta tttccacttg
     1201 gcctacatct tggtcctatg ccacaatgag
//
LOCUS       KCLJ01000852             634 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 95624cal ultra-conserved element locus
            uce-3073, sequence.
ACCESSION   KCLJ01000852
VERSION     KCLJ01000852.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 634)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 634)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..634
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="95624cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>634
                     /note="ultra-conserved element locus uce-3073"
BASE COUNT          191 a          140 c          129 g          174 t
ORIGIN      
        1 atcatttaaa cttttctcct tcagggaaac acattccacc tagaaacaca tcccagaact
       61 ttgctgtaag cagccactca gtttctgcat gagcagaaac aaaattcaaa acaggatctc
      121 atttacagat ataagataga tttgaggttt gtgaattggg aattatgacc agctgcaaac
      181 agcaaaggtg gaagtgaagc actacggttt aatgttctat ctagtgtggg ttaataattc
      241 ttcttttccc tgttttggtt aaatgaacat tctcttacca tttgtctggt ttgtccgtgg
      301 ttaggcagac ctaacaaaca ggaaagagaa tagagctggt aagaccattg cttttccaag
      361 acagaaaaaa gtacaaaatc aaaacacacg cagctatgat tacaactgtg ttgttttgct
      421 cagcctgagt tgcctactga actgacttct gcaaggtgac tgagtggttt gaagagcaga
      481 ggccccaagt acaaacacgt tccactggcc cagtcccttc tccatgtact caaaccttgc
      541 ttcccactag ccacacctcc tgcatctggg gtgacattct cttactgacg tcaaggagga
      601 gaaagtagaa ggcattattc actgtcaagg cagc
//
LOCUS       KCLJ01000853             784 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 95733cal ultra-conserved element locus
            uce-6113, sequence.
ACCESSION   KCLJ01000853
VERSION     KCLJ01000853.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 784)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 784)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..784
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="95733cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>784
                     /note="ultra-conserved element locus uce-6113"
BASE COUNT          252 a          160 c          147 g          225 t
ORIGIN      
        1 ggatcagaca tttttagagc tcagatggaa aacaccgact cgaatatgtt ttgaaacaat
       61 ttccacacta ccttaaaaag cagctgtttg tagaagcatg gtttacatca atcagtacct
      121 aacaatttta tatacaacct ttctaaaatt catttgcata atgataatcc gcatatggca
      181 gggtttaagt tatttaagcg gtgttatatt tcactattta gtgttgcttc accactgctt
      241 tagcagtgaa tccttctgga gtgtaatgca gctaatgagg tagcttttta actgaacaaa
      301 ctgacaggtc ccatatctgc agaggcagct tgaaaccgtg cccaacctct cggcttccca
      361 agaggctttt caaaattcaa taaataacat ctgtaggcga tgttgggtgc agacctagca
      421 gagtgcgtca taacactgag ctggcagaac aaagaaacca tgacgactgc caagtttcca
      481 tggcaaccgc tgcgaggctt ggagagtata atagcacatc aatcattgtc caaaagaact
      541 tcattatcag caagccttta ggatctgttt agtgtgcaat tgtgggttaa ctcacctcaa
      601 agccttgctc tctagcaaaa gtggcagctt cctgaaataa taaaaaaaga acagttaatt
      661 ataaagtgct agataatgaa gaaataacac attttgaaac tcattcagcc agttttcctt
      721 ttacaggatt atctcaatat agccatatac agttgtgcaa ttctgatagc cgcaccaaaa
      781 gctt
//
LOCUS       KCLJ01000854             806 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 95846cal ultra-conserved element locus
            uce-129, sequence.
ACCESSION   KCLJ01000854
VERSION     KCLJ01000854.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 806)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 806)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..806
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="95846cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>806
                     /note="ultra-conserved element locus uce-129"
BASE COUNT          265 a          127 c          139 g          275 t
ORIGIN      
        1 tgcttatgaa catattagaa aactttatct gccactgttt tgcaaacaga gacttcagaa
       61 tactctcatt aatgaagtga aaaaaagtaa taactctctt aaggaatggc atttaaaagg
      121 agtagtgata aatatcagaa aaaagtcaaa agagttgaag aagttttaag cattatcctt
      181 ttcagcatgt ctatcaatag aaagctgaca atagtattat tgctatttac atattggtaa
      241 cacactggta tgaatttgca taacgtattg tagttctgtg ctctagggac ttgcattgta
      301 acatattggt gcttaatgaa ctctgaaaaa attgattttc cacagagtaa attaaggaat
      361 gcattatagc tgttaaagca atcttaaggg aaatctgagg cttccactgc agcaccgtgc
      421 ttagtaagta ataaattaca tgttatactt atttgcctta attcatgcta attttgtcca
      481 attaatgtat cacagtaatt cagaagcctg tcacaggaga gctaattatt tattggattt
      541 ttgtgttcag ctccctagga gtctactagc aaacaaactt gcgactgtct ttctgttagg
      601 tccacaatga caatcttatg tcttactggg gaaagaaaaa gaatgttatt ctttgtttca
      661 gttatataaa tggatcatta ctcatttttg tttacaaatt ggtgtcacgt catgacagac
      721 tgttaggatg aaatccaatg tttttcctct tcctgtaaat gcctaaacat gacataattc
      781 ttcttgaaga ccatgacagt actttt
//
LOCUS       KCLJ01000855             497 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 96060cal ultra-conserved element locus
            uce-5415, sequence.
ACCESSION   KCLJ01000855
VERSION     KCLJ01000855.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 497)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 497)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..497
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="96060cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>497
                     /note="ultra-conserved element locus uce-5415"
BASE COUNT          172 a           84 c           91 g          150 t
ORIGIN      
        1 gaagaggaat tctccttcca tatcttcctt tgaatttgtt ggatgccatt ctgaaagagt
       61 caagagttca agatttaatg ttctaataaa agtatgcatc ctgaagtgag acgtctgaaa
      121 tgatactgca tcatcagtaa agtgaatcca ccagacatcc tatacattac agtgaacaat
      181 ttcaaatctc aacttcctac agcactcaaa gtgaaatgaa gctgaataga acaaatcctg
      241 atttttcaca tttgctgtta ttaaagaatg gaacaaagta gtgccgaggg gaataagaga
      301 ataaagctct ggctattcag ttgtgaagaa agtaaattaa taatactaac ctcatttctt
      361 ttgtacatga tttcaattga tgccctggag aacaattcct ttgtagaaat ggggaatgga
      421 caatggaaac tattgctata tcttgcctca gtgctattga caaatcgtat gtcagcatca
      481 aattatagga tgtcata
//
LOCUS       KCLJ01000856             677 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 96166cal ultra-conserved element locus
            uce-3792, sequence.
ACCESSION   KCLJ01000856
VERSION     KCLJ01000856.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 677)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 677)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..677
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="96166cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>677
                     /note="ultra-conserved element locus uce-3792"
BASE COUNT          198 a          134 c          150 g          195 t
ORIGIN      
        1 aggtctcttg gcttgagaaa agacataaaa aaaggagatc tgtttactta ttttaatgtg
       61 tttttcccca ccccctcttg tcttgtctgt tcctcctgtc aaataaaggc caagaaacac
      121 caggtctttc taacagagac gtatgaaaac aacatgagag agctggagtt actcttggac
      181 agctttgcta tgtcaggcca gcggacagca ggttagttga aggtataaaa tgacagatgc
      241 atctgtcagt gttccaaagt cactacattg tgggaattct gcagatgcct cttgcattcc
      301 ctcttctcaa catgctttga tttgatgaca tgataagagc agttctcaca gcagtcaaat
      361 ggccttgcta gctgagaaag ggtgacggat tgtggacctg ctgttgtcag cccagagctt
      421 gatttacaaa tgctggggtg tatatgatcg gtcagaaaag ggctcacttg ctgtgctcta
      481 aatccaactg agaaaaaagt ccttacagta tacctgcaaa gggaacagat gttttgcctg
      541 aactgagcca aattctgagg caaccttcag caacttaaag gtcatatatt caaaaaggtt
      601 gtgtaggaca catgatgcaa cacaatactt tttgcagttg attgtagtat gttgcattca
      661 tttaatctga tacagaa
//
LOCUS       KCLJ01000857             730 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 96274cal ultra-conserved element locus
            uce-4550, sequence.
ACCESSION   KCLJ01000857
VERSION     KCLJ01000857.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 730)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 730)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..730
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="96274cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>730
                     /note="ultra-conserved element locus uce-4550"
BASE COUNT          224 a          141 c          134 g          231 t
ORIGIN      
        1 ctggcaatgt ctgtatcatt cccagctctg ggtaacagca agagactgtg ctttcctatt
       61 gctttagtga gtgtactctt caaacattta ttgtattgca ggggataaat aatgcatacg
      121 agggaagaaa atttacatta taagttgatt aaactgctta acagttttta gccactctct
      181 aaataaggaa accagattta atctatgcag tgtttcatgt ccaaagaact agcatttaat
      241 ctctgtttaa ctgaaattta gttagcaatg ttgacacctc tgcattttaa cactgggatt
      301 tctttgtgag acacaatccc tttcactcaa cttaatatcc catcttggtc tctaagggaa
      361 aataattgag tttaggctag ttctaaatag cgataaggac agggaacaca gatgggtatt
      421 tcattgatta acactaacac tggcctaagg ccttggtgtc aggcattaga ttaggacatt
      481 actaagagaa tgacagagtt ttggcacttt attcctcctc aataacattc tttcacatat
      541 taagtttatc ccaccctagg tagctacttt atcatgcaga aggccttaat ccactgatgt
      601 gactctatct gctttcactt tgatgctgcc tctgtttaca agagtaatgc agcctgtgta
      661 agacaaagta ctcgtgacaa gaacaactga ataaggcttt tagatgcaca gagctctgac
      721 ctaaaaaaag
//
LOCUS       KCLJ01000858             793 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 96385cal ultra-conserved element locus
            uce-7958, sequence.
ACCESSION   KCLJ01000858
VERSION     KCLJ01000858.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 793)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 793)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..793
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="96385cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>793
                     /note="ultra-conserved element locus uce-7958"
BASE COUNT          269 a          153 c          130 g          241 t
ORIGIN      
        1 taaaatacat gcttaaaaca gatgggccat tcaatctcag caatgatatt ctttaatgct
       61 aatttttaac aataaaagaa acactatcct cccacacaca aatagccata attatgtaaa
      121 gaatgactgc ttcagactga tgactttcaa tatgcttgag tctagcatac tggtataaga
      181 ggccagaaag gtcaacagta attcataact gctataaaat tgtgtagcat cctagggttt
      241 ctggaggatg ctgacattat catgcttctt ctgctggttt gtatatgtaa atttgtgata
      301 ggaagtgcac tgctttgcca tatcgcatgc agagcatcaa tcaggcagta gaatacatca
      361 gagtattttc attatgccta gttatttact gcatcagaag aaattaccct ggcaagccaa
      421 gcggccttct ctggatagca tgatatgacc aaccaggttt cagctcagaa gtcttgtaaa
      481 cattacagga ttaatctcac aatcacaatc atcaatcttt cctagtcctg cctgggtgca
      541 actgcggaga ttggtaacca ggcaatgtag atttaaattt aaccctgaac atcaagagct
      601 atatgtcaga tctgtgcacc atattacaaa cacctatatt tttactccag ctttagtaca
      661 aaatgatgaa aacataaaat ttttgcactt caaattcaca tctaattttt cattcccatt
      721 tttgatgcat tacagggaaa taagaaatac tcggaaaaag atatatttca taataccaga
      781 atctaatgtt aaa
//
LOCUS       KCLJ01000859             397 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 96497cal ultra-conserved element locus
            uce-1065, sequence.
ACCESSION   KCLJ01000859
VERSION     KCLJ01000859.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 397)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 397)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..397
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="96497cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>397
                     /note="ultra-conserved element locus uce-1065"
BASE COUNT          142 a           62 c           80 g          113 t
ORIGIN      
        1 ttttgcaaga gggctggtag tttcattaat aaataatttg aactaaaggg agaagaaaac
       61 cttccgagga ctacagtgtt aggcacagcc tggccatgag gttaaggagt tcacctcttg
      121 acgtggggca acataaactt ttggaaataa atgtaaacaa tggcaatgag cttgtaattt
      181 atatttattt tgcacaagct tgcatatata ctgcacatac attcagttta gagaagatgg
      241 aaggcacaca aggcaattga actactgtat cctttaagtg gtacaaagca aaaaggtaaa
      301 agtctggaga gtatacaaaa gctttaaaca cacaaaataa aatccatttt tcctgtgttt
      361 atcttaaatt tagtagctgc caagctagaa ttgtaac
//
LOCUS       KCLJ01000860             582 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 96604cal ultra-conserved element locus
            uce-1354, sequence.
ACCESSION   KCLJ01000860
VERSION     KCLJ01000860.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 582)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 582)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..582
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="96604cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>582
                     /note="ultra-conserved element locus uce-1354"
BASE COUNT          148 a          117 c          136 g          181 t
ORIGIN      
        1 aaaattgaaa tatttgtgtt tctttttgcc tgaaggtgaa attgctatga agtttttccc
       61 ttctttctct cctgtgggct ggcaatcagg tgttgtgctg gggcagttac atggcataat
      121 tcccacgaat gtaggaggag gatgaaaaag ataaagaaat tttgtttttc tgagctggag
      181 gattctctgc atgacttccc cactgatggg atcatgtgct ttcaggctga gattttatta
      241 acaattcaaa tggaaattga gggcacagga ggagcagatt ctcacataaa cttgatctgt
      301 ccatgaatgc agttctctgt ttgccctgac cctgcatggc ttaagacact gcctgtgagg
      361 cctgagtgcc agacacaaag accgaaatga aaagcaagca cattccagta gtctgcacaa
      421 aggcaatgga gcagtttcta gccgtctccc cagggagaga tcttatctcc ttctaaaccc
      481 ctttagagtg tttatttgta ctctagcacc cgaggtttat tgatatggat gctgattggg
      541 agacactgag gtttctttcc ccgatattta tccttgcttt gt
//
LOCUS       KCLJ01000861             539 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 96713cal ultra-conserved element locus
            uce-5739, sequence.
ACCESSION   KCLJ01000861
VERSION     KCLJ01000861.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 539)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 539)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..539
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="96713cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>539
                     /note="ultra-conserved element locus uce-5739"
BASE COUNT          165 a          101 c          102 g          171 t
ORIGIN      
        1 tgttcaatgc aaagctaatg tctgttttgt ttacaaaaaa ttgaaatgta ccttaaatgt
       61 gctatagtgc cttggacaga tggagctttc tctagtcaaa cctcagcttg aaagacactc
      121 agcttgtaga gctgaagctt agttggtggt gcacttcatg tccttcatgt aaaatattct
      181 gtcactttta attttgtacc ttgtttactt tctctgttac aaaagaactg ggacttgttt
      241 ttagcagctc tgattaagtt tctattgatt ttcgagatag gaaatggaac tttcagattt
      301 cccacgtgaa tttaaagcaa gtcagatatt aacctcgagg taaaacatct gccatgacat
      361 tccaagaata gacaagtact atctcagtga aaacagcatc tgtgctcaaa tctcagtgcc
      421 tgggagttgg aattggagaa agcagcagga ctgtattttc acatgtgtca cacatgaaca
      481 tactgacatt taaaagatat ggattatcat gcacacaccc ctcaaagcac taatggcta
//
LOCUS       KCLJ01000862             534 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 96823cal ultra-conserved element locus
            uce-2795, sequence.
ACCESSION   KCLJ01000862
VERSION     KCLJ01000862.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 534)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 534)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..534
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="96823cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>534
                     /note="ultra-conserved element locus uce-2795"
BASE COUNT          184 a          113 c           96 g          141 t
ORIGIN      
        1 ttttcagtag aagtccaaac gaggtgaaag aaataacagc aggaacataa acacaaagct
       61 gaaataaaaa aatgtagaat cacaaagaaa acctaaacaa ataaagtgca aacagagagt
      121 gacaagcgca ctcagcccct ggattggtta tggatgagtc gacaagtata tgatgaaatt
      181 aatgaccctc tgtcaacttt ttagatctca cttttaaaga gaatggacca aaaatcaata
      241 gcccccaaac cactagtact ccagtgaacc agtttatcat ttatcttact gctggcactc
      301 atatagaaag tgcagccaag cacagcatag gactttcatt ggtagtcatc attacaagca
      361 atgtttgagc actccagtta aaggtcaaag gtgtgcagta cagctcctct gagaagtacc
      421 tatttgaaat taccaatatc tgtgtatggc ttatccatgc tctacactat tattctattt
      481 ttttccccag ccccatgtgc atttccctgc tctgagcttt accttgaagg agag
//
LOCUS       KCLJ01000863             790 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 96934cal ultra-conserved element locus
            uce-2781, sequence.
ACCESSION   KCLJ01000863
VERSION     KCLJ01000863.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 790)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 790)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..790
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="96934cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>790
                     /note="ultra-conserved element locus uce-2781"
BASE COUNT          212 a          166 c          182 g          230 t
ORIGIN      
        1 aaagtgcaag gatataagcg tcaacttttg tgaaacaaaa gtacctttga cttttgtgtt
       61 gtgtagctgc agccttatgg gaattctgca tattttcaga gatgcacaag ggtttagtgg
      121 tctcatttag ttacctatgt gcccctgaag aagccctgct agcagtaaaa cactctggtg
      181 gcaaacagct aattcattaa ttaaccacag tatttgccgg aaaggaaagc actaaacaac
      241 gctgcagaga aagtgcaatt gtggttgttc caggtccctg tctgcagtct gtgcggcaga
      301 ggcaagcaat gcctaggctg tttctaatta ttccaattat catggcacac tatgaaaact
      361 tgattaataa cactgaagat attgttgtgg caattagcca tatggttgtg ggactttatt
      421 ctgtcacgat ttagccatta gcatctactt atgtttgtca gaacagagca tccgtgacaa
      481 gttggagttc cgctcacctt gccgagtccc tggtgagcaa caccagagaa atgtttattc
      541 ctgggagccc cgtgcctgag taaatttttc atgtggcatc cggtctgact ggggacaaat
      601 gtcaagtagc ttatgccacg acccatcaag ccaggctcct ctgcaaaagg cgcctcgttg
      661 tcagggcaga cttctttcag gggagtattt gaccagtaaa attagtgtca aatgtcttgt
      721 gttccatgtt ttcagaggtt aactgttcag acagcatgca cctaccctta tttagatgtg
      781 acgaaatgct
//
LOCUS       KCLJ01000864             870 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 97046cal ultra-conserved element locus
            uce-1573, sequence.
ACCESSION   KCLJ01000864
VERSION     KCLJ01000864.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 870)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 870)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..870
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="97046cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>870
                     /note="ultra-conserved element locus uce-1573"
BASE COUNT          283 a          149 c          161 g          277 t
ORIGIN      
        1 tcctatttca acgtataaag tggcaagcca atttatgcag cttaaaccat tgctaaagaa
       61 gatgtatcaa aaattgcctg tgatcattac aaataacagc ctgaaatgtt cacaagaagc
      121 tgtttgctta tcatattttc attaaaacat cttttcacct gattttcttt tcccatgcct
      181 gtaacctgca ttgtaatcag tcttattaac tgagaacata aatatgattt attatggtct
      241 gataatggaa gctgcatgga ccaagagaag ggatatattg tcctttgata aaatggctct
      301 tttctctcaa atagagctct atcatgagag catgcagaat gtagtgagtg attatttcct
      361 gagggtgaat gatggcagaa ccctacagaa aatcttgttg gccatgacag cctccgagtg
      421 tccccaaatc tcactgagtt tgacaacctg cagacacttt tgatgaactg tattcttctg
      481 tcagagacag cctgtctggg aggagaaaag ggaaccttta tcgtctgatc tgctattatt
      541 gtcttgatct tttataagca atctctaatg cacatgaata taatatcctt tcacagaagt
      601 gccaaacata atagaaatgt agttaaagga cccttttccc ggttatgtaa atgtcctaat
      661 accataatta gaaaagatgg attgtgaatg atagcagcaa ggaaagggta atcaaaatgt
      721 tttaacattg tctttctgtt ttaaagacca aaatctgtga taaatagcat ttatggtaga
      781 tatggggaac cagcttgtgc tgaagctttt acctaaagaa aatagttttg agtgtaaaac
      841 tgttatattt tcataaaaca cataaatggc
//
LOCUS       KCLJ01000865             536 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 97158cal ultra-conserved element locus
            uce-2049, sequence.
ACCESSION   KCLJ01000865
VERSION     KCLJ01000865.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 536)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 536)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..536
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="97158cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>536
                     /note="ultra-conserved element locus uce-2049"
BASE COUNT          120 a           87 c          106 g          223 t
ORIGIN      
        1 caaatggaaa tttttgtggc ttactctcgt gggccccctc gatcatgact gattttcaag
       61 tttgatttct ggacggtaga aagagagttg gttttgtttc aagaattcaa aactttggct
      121 tgatttcttt ttttcccttt gcttatatct agtgtttaga attttgtctt aacaaaagcg
      181 gtaagtttca ctttttattc tgtatcgtgc agttacacaa taaggtaatt agaattagga
      241 gtactcggtc actttgcgtg gataaatgta ttagttaaaa cgttaggggt ttgctttttt
      301 gctgtttaga tcagagtttt ttctgattct tctgtcctca ttgtgaacat aaccgtgtag
      361 ttgaaacagt cagacttatt tttgtaacgt atgttattgt gtgatgcagt tttttgcttc
      421 tgtctccaat attaaaccat tttcctaata cttgtctctc tactttgtgt gttgtattgt
      481 tggtggtcat tctgtgttgg taatacatct gcacacctca ctgtttcacg tgcctg
//
LOCUS       KCLJ01000866             416 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 97269cal ultra-conserved element locus
            uce-3303, sequence.
ACCESSION   KCLJ01000866
VERSION     KCLJ01000866.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 416)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 416)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..416
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="97269cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>416
                     /note="ultra-conserved element locus uce-3303"
BASE COUNT          152 a           68 c           77 g          119 t
ORIGIN      
        1 agggaagccc actcagaaca attaaaccat cagctcagga attaaattac ccccagctat
       61 cataagcaaa taacctacat gggacattgt gttatctaac tgaccagttg atgctttgct
      121 ttttccagct ttaagaaaga aattaaatgg tatggcagtg tattactctc atttccaatc
      181 ctctggagca gataaacatt atcatgaaac tggccaagga tgaaatttaa ataagtagtg
      241 actggagagg agaagagttt ccaaattaca aaaactgaca aattagttta attaactgca
      301 tattttggag tacaaggata tgggggaatt atttatttta atgtgtaatg catactcaat
      361 atttctgtaa aggaataagg tatagaaacc ctgccacaca attactaaga agtagg
//
LOCUS       KCLJ01000867             530 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 97376cal ultra-conserved element locus
            uce-72, sequence.
ACCESSION   KCLJ01000867
VERSION     KCLJ01000867.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 530)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 530)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..530
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="97376cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>530
                     /note="ultra-conserved element locus uce-72"
BASE COUNT          180 a          108 c           92 g          150 t
ORIGIN      
        1 acccacctcc ctctcttctc tataagggag gggtgctgtg agggagtctc ctgccacttg
       61 tccttcttgc taaaaataga actgaaatgg agacaggaaa gaatgcaaat actggcacaa
      121 aaggaaatac tgaattacat attggtcgag caaaacacaa atcaactcaa aactacagga
      181 gtccaccaac atgcacataa atcatttata acgataatcc aaggctgggt ccaaatctca
      241 ttaaagtata tgaatcctta atctattttg gcaaaaaaga gccaatacac attttttctt
      301 tttatcataa attacagttc tgtggcactg tgcaaatatt accaagctgt aagacagctg
      361 tgctccatta aaatgtgtaa tggtcgctga tttcttacag cacatggtca tcaggctgaa
      421 tctacagcca gtaattagga agatgaaatg tttaattgtg ccttaatttt gataaaattt
      481 atctgtcaca catcccgtag tcaagcagta tgctcacaaa tcaatgtcat
//
LOCUS       KCLJ01000868             799 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 97489cal ultra-conserved element locus
            uce-5255, sequence.
ACCESSION   KCLJ01000868
VERSION     KCLJ01000868.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 799)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 799)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..799
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="97489cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>799
                     /note="ultra-conserved element locus uce-5255"
BASE COUNT          222 a          176 c          178 g          223 t
ORIGIN      
        1 caatcttact cagagcaaag ctccatttgg aaactttaaa acaaatgctc tgcttttact
       61 taaggcttta attttttctt cttttaaaaa ggagccctta gggaagaaat gaagtaacca
      121 tgcacattcc aatgacatag ttatgacagt tcagaggcta actatgtagt gatgaatgaa
      181 acaaaaatga aacgtggaaa gaaagaaaaa aattccatgt tttaaaataa acgaaagtaa
      241 catacctgtt gggacattct gaataagagg ttagtgtcag tgttctgcca tgtccccatg
      301 aaaccagagt cggtcgctgc cgttcttgtt ccgaactgca tggagttgtc agtgcaggag
      361 tctcttaaag tcaagtctct tgccctcttt cgctctctgt gtctctgtgt gtgtctgtct
      421 ctcacatcca cttctgcctc ttctgactga aaagtgaagg tggatttttt gagcctcttg
      481 gcagcgagta gcaggagtgt agtgtagtta agaagctagc tgcactgtgc atttcatttg
      541 ggaagggggg attcagggga gagggtcaga gcttctttcg caccttcagc agagagaccc
      601 ctatcattta tgcatagatt gtgactcccc aagctcgcct ttgctcagtt taacagctgc
      661 ctgtcaggtg tgcatgcagc actaaggaga cccaaccatc agcttcaaac tctcagccac
      721 tggatgtcat tggatagcag agcaaagagt caactgcact gctccactgt caggcaccaa
      781 atgacatcct gcactaacc
//
LOCUS       KCLJ01000869             738 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 97602cal ultra-conserved element locus
            uce-5845, sequence.
ACCESSION   KCLJ01000869
VERSION     KCLJ01000869.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 738)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 738)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..738
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="97602cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>738
                     /note="ultra-conserved element locus uce-5845"
BASE COUNT          247 a          133 c          143 g          215 t
ORIGIN      
        1 atttttgtag gagccacaca atttgcttgg aagcagtttg cttttggaga ctattccgag
       61 aaaacaatga agctgcaaga ctatatttag gggtgtctga tagcctaaat ttggtcatgc
      121 taatgcttaa aaatcataat cacttcaccc tgaatatagc tctgaaattg cttgaatcta
      181 ttataaagca aagcgaagct ttctgttaac aaaggagcac ttacctgtaa tcatagttag
      241 agctgataga cttgctaagg ctgggatatc aaggttaagg ctctttaagt ttaaggaaaa
      301 gtctttaata gagtcgagcc actccccaaa tcctcgaagg cactgaagtc tatgaagcac
      361 gagtccattg cagaatacaa acttatcttc agcagtatca gacctcaaat aaaaacaatt
      421 gaaaaaatta taaatgcatc ttctacttta cagaaaaatg cataaccagt attgaagcgt
      481 ctgtcattta aaatccaagg catattatcc tgagacatat gtgggcattc acgtttgaca
      541 atatgtttct ccctcagggc caaagtacaa caaacaagct tctgtgattg cttacttggt
      601 agagttataa gcctgaggtt agctgcagca tgtggtgtag actgtctaat tagttaagat
      661 tttggtcctg cccaaaggca taaacagaga agacattttg cattaaatac tgtatgtttg
      721 aaccaaagga atactaag
//
LOCUS       KCLJ01000870             563 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 97713cal ultra-conserved element locus
            uce-4395, sequence.
ACCESSION   KCLJ01000870
VERSION     KCLJ01000870.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 563)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 563)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..563
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="97713cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>563
                     /note="ultra-conserved element locus uce-4395"
BASE COUNT          172 a          120 c           95 g          176 t
ORIGIN      
        1 ctttgctgat agactatgca aatgtcccac aataatgctt ctcaagctgt tacaagtaca
       61 aactatccag atatttagat actatggtat ctaataggat gctatcaatc ttttatagta
      121 agggaataca taaattataa acaaatatgt cctttggtct agtggaacag cataatgatc
      181 aaagacacac aatagaaatg tatttgcttc tacagtaagc tttattccct cagtgctcag
      241 tccatagtga tggacaggca gtgagctgtc agtttttgtt ctgtctgtca cactacactt
      301 acctcctgtt gttttaagta atcaatatgg gggctgaaat cacctaccac tacctctgct
      361 acctactatt ttgtccactc ataaattatg aatccctgca caacgtcaag tctacaattt
      421 cgattgcatt tgctaatcat tgatcaataa ttcaaaagcc ttttcttctt caagggtccc
      481 tagtttcctg gaacatatgg caaaaggctg ccagtgctca caaaactatt cccggagcca
      541 gggaaaacaa gttgtcggaa gtt
//
LOCUS       KCLJ01000871             674 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 97823cal ultra-conserved element locus
            uce-6954, sequence.
ACCESSION   KCLJ01000871
VERSION     KCLJ01000871.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 674)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 674)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..674
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="97823cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>674
                     /note="ultra-conserved element locus uce-6954"
BASE COUNT          126 a          192 c          224 g          132 t
ORIGIN      
        1 acgcctcgct gggcagcggc aggtgagtct tggaggaact gttgcagtgc tggacctcga
       61 tgatctccag cgcggtcccg tcctggccct gccgcaccgc gccgttgaca caagcgccgg
      121 gcttgggctc tacagtccgc cgccagcctt tgccgggctc cccgttgcct ttcttcacgg
      181 tggccggaga gagggtgagg caggtgtcgg cgattttttt cttctctgct ttctttactg
      241 tcttgcggat cctaaagcgt gccgccttga agatgcgacc gtagagcacc agcatgagaa
      301 gaagcggaat gtagaaggcg ccgaaggtgg agtagatggt gtacccgtgg tccttgctga
      361 tggtgcaggc gtcggggttc gagcggtcct ccggcgtcct ccagcccagc atgggcggga
      421 tggatatcaa gaagccgata agccaggtca ggctgatgag cacggccgcc cgccggggag
      481 ttcgcttgtt aacataatca atggggtccg tgatggccca gtacctgtcc aaagcgatgg
      541 cgcacaggtg caggatagac gaggtgcagc aaagcacgtc cagcgagatg aagatgtcgc
      601 aggtgacctg ccccagcgtc cacttgttca gcacctggta gagggccgcc atgggcagca
      661 ccagcacgga cacc
//
LOCUS       KCLJ01000872             799 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 97935cal ultra-conserved element locus
            uce-4638, sequence.
ACCESSION   KCLJ01000872
VERSION     KCLJ01000872.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 799)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 799)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..799
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="97935cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>799
                     /note="ultra-conserved element locus uce-4638"
BASE COUNT          238 a          161 c          131 g          269 t
ORIGIN      
        1 gtgcctcagg caggacatgc acccctgggt gcacagcaac atccaggtca ctttttactg
       61 cactggatcc agtgagagca gcaagttttg tcagaacgat attcaagagt cttttcatac
      121 cccactatgt tttgttggca tatatttcca agtacaaagt gcagtccatc acaataatat
      181 tttcaataaa atttcaagaa aatgagatga taacaagacc atgatatttt aaattgaatg
      241 aatttcaaga tagttaagaa ttagactccc agaggaatac tttatgtcac aagctatgaa
      301 cactactgtt taatgtacac tcatgctcca tctgtttcct tttccattat tcgaatctcc
      361 taaccagttt ctcatgcaca cttttcagct ccatgctgtg ttttctattt attgaataca
      421 tttctcactt caacattttt ccacctgagc tggcagttgt ggcttttatg gctgtacaca
      481 tgcaggtctc cgtagattat gaacttcata ttttttcatt tgcctcatgc ttcagttctc
      541 tagcttagta ggccctaaaa tgtgcaaatt gagaggtgtt ttgaagtaac cattgctatt
      601 ctaggccatt gacttgtcat caattagatt aaaacattgg tttacaaaaa taatgttttc
      661 tctttacttc ataaaaaata aaacacttgg aaaaggaaac ccagctgtgc caagaggcaa
      721 attactttat gtgagtaagc aaacattttc tggtcagagc tacaatgtat tattcagggc
      781 cattttacta catcagttt
//
LOCUS       KCLJ01000873             653 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 98047cal ultra-conserved element locus
            uce-2551, sequence.
ACCESSION   KCLJ01000873
VERSION     KCLJ01000873.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 653)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 653)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..653
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="98047cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>653
                     /note="ultra-conserved element locus uce-2551"
BASE COUNT          215 a          118 c          117 g          203 t
ORIGIN      
        1 tttgggggct ggttgcccaa tttctaactg ctttcataat gtactaacca aaatttagag
       61 tctatttctt tttcattcat tactactgtg atagagatgt tctaaatcca gtcactgtct
      121 aaaaggatgc agcagcattt taaaataata tagataatgt gagaccctaa attctaggaa
      181 ttccatttac aggcaaccta gaaaacagaa gtggttaatt tataaggaag cacagaacaa
      241 aggtaaggca cttgccaaca atagtttgtt ggtttaactt tgacttgctt tcctgggaaa
      301 gaagaaaaca gaattttcaa tgtgaactgt cagccccact tatgacaggg cttcactagt
      361 taggaattca gagttcctcc tccattggca gaatgatgta aagaaaacca ccaaacaaaa
      421 ttctttcaag tttcaactac aactctactt aaataattta ctttttagtt ttactcagac
      481 tattcttttt aaacttagtt gacattttcg ttgacaagca cattttattg cacaagatca
      541 gtagtggaat tggcagtgaa aaagagagag ctggctctac tcaatgagag aactactatc
      601 ttgcctttgg gaaaaacagt gttggcagtg accctttctg aagccagcaa taa
//
LOCUS       KCLJ01000874             455 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 98159cal ultra-conserved element locus
            uce-8016, sequence.
ACCESSION   KCLJ01000874
VERSION     KCLJ01000874.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 455)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 455)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..455
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="98159cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>455
                     /note="ultra-conserved element locus uce-8016"
BASE COUNT          135 a          109 c           71 g          140 t
ORIGIN      
        1 gatctgccaa acctatggag gaagcctcag cacaaggaac agtaaaacaa gacaaagttt
       61 ccatcaacac caaataaaat ccatgactgc ataaccacag tgaatttttt ttcatattct
      121 gaacacaaga aaagatatcc tcatgttctt accctgtgat ttcctcatgt cttttgtggc
      181 taaagcacga ttcccatgcg gaacactggt aaaatcagga ttggtcacat tgttaactct
      241 cagctcttgc cccaacgact tccgaccata agtattttcc ccagatcctc cattgacact
      301 gtagccacct gtggacaaac caattaccag ggtagtgtgt gagttattca aaattagcag
      361 ctctttagct tccttcttca cttccacatg taagtttcca ggtcacattt agaatctcat
      421 cgttaaagtt tttttgttgc atttattatt attac
//
LOCUS       KCLJ01000875             543 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 98267cal ultra-conserved element locus
            uce-1351, sequence.
ACCESSION   KCLJ01000875
VERSION     KCLJ01000875.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 543)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 543)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..543
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="98267cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>543
                     /note="ultra-conserved element locus uce-1351"
BASE COUNT          192 a          110 c           81 g          160 t
ORIGIN      
        1 atgataatac cagaattcac aagaaagagc cgtgagcctc tagcacttac cagctgtaat
       61 actgaacaga ttacacagaa aaatcaggca aaaaaaagta atatgctttc acctcacagc
      121 acgaaacgct gaagttcagg aagaggaaat gtgtattaag agagcaggtt aaaaatctac
      181 attattccag actttcatga aatcaaaatg ataggcacga tgctaagtta ttataatgta
      241 tttattacca gaattgcttt catatttaac tgatttggcc catcttgaga cctgttttaa
      301 aatgcaccac cttgtccacc tttccatttt catatgaaaa acaggaaagc aaaaactaat
      361 ttactcaggg agacacatcg actgtttgcc cgtttatctc ttacagacca cccctcagtc
      421 caatgttgac agtacatgat attccattaa tctgcctaat gaaaatttaa ccagtgttat
      481 aaacaaataa ttggctatta tcctctcaaa gatcccgaat aaattacttc tgcttatttt
      541 ttt
//
LOCUS       KCLJ01000876             795 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 98376cal ultra-conserved element locus
            uce-2016, sequence.
ACCESSION   KCLJ01000876
VERSION     KCLJ01000876.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 795)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 795)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..795
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="98376cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>795
                     /note="ultra-conserved element locus uce-2016"
BASE COUNT          239 a          127 c          164 g          265 t
ORIGIN      
        1 tgagaatgag ccaacacttt gggaatgaaa ggatgaaatg tgcagtatga aaagtgataa
       61 taaataaatt gaatgaaact atgtgtactt tacgactagt tgaagtggag attaaaagct
      121 ctgaactgat gcatggaaac aaaaatactg aattcatttt aatcctctgg tttaagtggg
      181 tgtgccttca cttctgggtc cagaaataat catacttgta tcaatctata ttgtgtgact
      241 tttgtaagct gtgaaaatag tatttttcac tggattgtca cttattattg ttcatttgtg
      301 gccactaaca tagaaaaatg tcgcagctac aatgtcagaa gaatagggac aatttgatgt
      361 tttcttttga tgctgtttgt tgatacctag accactgcag cttgattgcc taacattaaa
      421 cctataataa cagtgcaatc atagcagtat catcatgaat gtcgttacaa tagaaacaac
      481 atttacacgg cttcagaatg gtaattatca aagtttttgt catgaagcgc ttatttgcta
      541 gcattgatct gccccggtca gttgttagct cttctcatct gaggtgtatt gattgtataa
      601 tcagtagata gaggctgcag ggagatgaaa ttcagtgttg ttgggcaaat tattgtctgc
      661 ttgcctgttg acctggaccc tgctggttgt accttagaca gtggtgggat tattactcat
      721 ttcagtgacc ctactctgac agagaactcc atattattat aaaagataaa tggcatcctt
      781 ctttactgtg gatat
//
LOCUS       KCLJ01000877             666 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 98488cal ultra-conserved element locus
            uce-2775, sequence.
ACCESSION   KCLJ01000877
VERSION     KCLJ01000877.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 666)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 666)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..666
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="98488cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>666
                     /note="ultra-conserved element locus uce-2775"
BASE COUNT          201 a          102 c          110 g          253 t
ORIGIN      
        1 ctgtctgtaa acttcattgt tggacacatc acttcatatg aagaaaaatg tgtgatgcac
       61 ttattgacag agaaaagcca ataaatcaaa tttgattcaa gaagctgaga aatattttaa
      121 taactttctg acgttttctt gtagtcctta tttaccttat caatagttat ggtgacatat
      181 gattgtcaac tttttatatt aaaccaaact aataaattaa acatgttgtg tttatacctg
      241 atgaaagctg acgttttgga aaggtgttaa aatatactga caggtcttgt tcataaactc
      301 ctttggtata aatatgtaga tgacatcttt agatattgtt tgtacatagg ctgataggca
      361 ggaaacgttg acaacgtaac aaatgcaaat gtcaacccca caatttaacc tttctgtgta
      421 ggaaaagatg ttagttttaa gttacatgta tcttttaact ttattttcaa agtttttttt
      481 gagcctgtta tcattgctgt ttcatgtgcc actgaaagta acactgcaat aagaaagatt
      541 tgcacttaag agcttttctc tgtggtgttc ctacttaaat gactgcggct gagagggttt
      601 ttttcttcta attctttttt ttttcatgtt tgcctagtac cttctgaatc tctttgcaat
      661 attatc
//
LOCUS       KCLJ01000878             699 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 98597cal ultra-conserved element locus
            uce-5947, sequence.
ACCESSION   KCLJ01000878
VERSION     KCLJ01000878.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 699)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 699)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..699
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="98597cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>699
                     /note="ultra-conserved element locus uce-5947"
BASE COUNT          191 a          159 c          149 g          200 t
ORIGIN      
        1 gaccaattca acagcttgct tttaagtttt ccattgacag ccaaactgca gggtttagtg
       61 ctaagctcca cattgcagct tatctctcct taattaaaat taaaatgtga gcaacaacac
      121 agagatattt tgcagcatcc tggaagagga gaagcagaag ctcgagtgat ggttgtttaa
      181 taagattata attggagagt taaagccttg tgatctatgt gcagactggt ttggtgctgg
      241 tgcggctccg tggcaggcga gccccaggtg cctggccaag catccctcgc cgacatctgg
      301 aaccagttgc aatacatcac tgtcaaaact gctttctata cgtatctgca tttacacatt
      361 agttactcac gcagcactca tcaaaaaagc tgaacaatct tgacacagtg tccctggtgg
      421 aacgacaaag gtgaaccgaa gttgggaggc agtgtctcgc gtcactgtct gctgagcttt
      481 tacaacagga agcctgatta aaactgaaag gaaaaattta tcgtcagctt ctgctttgta
      541 tcatttttac ctgcaaaaag agtattttgt ttcatacaaa gcagttgata atgaggcgag
      601 aggtgctctt cactttcacc actcccttcc ctgctttggt gtctgattat ccacagaatt
      661 ccctctttct tgcccagctc ttgctctgaa ttacagaac
//
LOCUS       KCLJ01000879             702 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 98707cal ultra-conserved element locus
            uce-5827, sequence.
ACCESSION   KCLJ01000879
VERSION     KCLJ01000879.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 702)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 702)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..702
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="98707cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>702
                     /note="ultra-conserved element locus uce-5827"
BASE COUNT          195 a          156 c          140 g          211 t
ORIGIN      
        1 attataggaa aacatggtct tttcagccat tcttctcttc cctgtccggc cccaactctg
       61 agcccccatg tcctggactt tgttcctatc ttgatggtaa agattttttt gtttctgttt
      121 cccctaagaa aggcaaaaag gttagtaagt ctttaaactc tcagttctta tggctgttaa
      181 tatttcacat tgccagcagg gaaaggaatt aaaactgcca gcagctatcc agatagattt
      241 taaaatcccc ttccctcccc cttctctctg cctccctcag cttcagagga tattttcccc
      301 gcaaattggt tttaaattaa ggaaggtgat gaaggcaatg tgccgtctca gcattttccc
      361 aggtgcactt aatctaattt cattaaggag atcaggacag atgatcgcta cagttgaaac
      421 attaagtctg tccatttttg tataaaaaaa ccattaagtc tgtcaaagtg tcggcgggtg
      481 ggctgtttat tattggagat gaaggcacgc tttgcttccc caataaactg tcaggagtag
      541 taaaccacaa attaagtcag ctgctgccaa agatttaggc aaagatctcc aactaatttt
      601 gacacaggta tggcaaaggc caaaccttgg aaactgagcc tgtgagatat ttcaatctga
      661 ccatccaaga gtggaagact gggcatcagt tgctgatgct tc
//
LOCUS       KCLJ01000880             413 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 98819cal ultra-conserved element locus
            uce-1039, sequence.
ACCESSION   KCLJ01000880
VERSION     KCLJ01000880.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 413)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 413)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..413
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="98819cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>413
                     /note="ultra-conserved element locus uce-1039"
BASE COUNT          146 a           70 c           55 g          142 t
ORIGIN      
        1 accaatctta tttttaattt gtacaggaac atttttacca caaattccat attttaataa
       61 tactatccca actctatttt ttaaactcat tttgtcactg ttttgtaaca gaaacactgt
      121 aaatattata gatgtggtaa actattatac ttgttttctt ataaatgaaa tgatctgtgc
      181 caacactgac aaaatgaatt aatgtgttac taaggcaaca gtcacattat atgctttctc
      241 tttcacagta tgcggtagag catatggttt actcttaatg gaacactagc ttctcattaa
      301 cataccagta gcaatgtcag aacttacaaa ccagcataac agagaaatgg aaaaacttat
      361 aaattagacc ctttcagtat tattgagtag aaaatgactg atgttccaag gta
//
LOCUS       KCLJ01000881             693 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 98927cal ultra-conserved element locus
            uce-4725, sequence.
ACCESSION   KCLJ01000881
VERSION     KCLJ01000881.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 693)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 693)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..693
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="98927cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>693
                     /note="ultra-conserved element locus uce-4725"
BASE COUNT          183 a          158 c          110 g          242 t
ORIGIN      
        1 ttatttactg agcagctttt aaaacgaaca tattaattta tttcatcagt tcctcaaggg
       61 aggagaacag ttattaatga tgtttaggca acaaacatga ccaccttgaa aagaacaaac
      121 gctaattagc atcgcctaca attcctcttt ccaaaccata ctttttaacc tgtacaccca
      181 atcttttcca atatttccat taaggctgtc aaaagcagaa gtttgggaac ctttgcttgt
      241 gaccttggca tttcttctca ggcttaacgt attggcattt tttcctctga ctgcatcgct
      301 tctcatttgt catgattatt gttgaatttt tcaactgtca ttcccgaacg taaatcaatg
      361 gttgtcgact tcccctttgt catatctgca ctgccaacag cctttccctt ctaaatgagg
      421 cttcctccct ttccatccat taaaaaaggc ctgtcttttg gagaagtcaa tcctttgtta
      481 ggtcactcca tttatcattc ttccaatcag tacctgacat acttattcag ccaggtcttc
      541 aaccacacaa tcattgttca ttttgagagg gagagaaggg ggtattttgt ttatgcatgg
      601 tgttttctgc catttctctt gaccggtttt atatcccttg tatctttagg ggtccttact
      661 tgcctgaaga aaacaccaaa ttcagtagaa taa
//
LOCUS       KCLJ01000882             799 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 99137cal ultra-conserved element locus
            uce-5864, sequence.
ACCESSION   KCLJ01000882
VERSION     KCLJ01000882.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 799)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 799)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..799
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="99137cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>799
                     /note="ultra-conserved element locus uce-5864"
BASE COUNT          235 a          138 c          163 g          263 t
ORIGIN      
        1 taattcctct ccaactggca ttattatttg attgcaatga attacctttt taaaaaaaat
       61 cataagtata aattcacttg actgatcctg caaattattt atgatgtagt gttttggtct
      121 aggataacct tttaaaataa atcagttttt caataatagt tcaatgtttg cccacctaat
      181 ggtgttccca ttaagatctg catttgtcac caacctgcct tttctgcctg tgcaggagac
      241 aagtcaccgc ccctaaaccc actctgcttg tagggtaaag taaatgcatg tctttgtagg
      301 agaataaata aaaagagcaa gctgagtcaa taagcgggtt caattcctgc ctgcagccat
      361 ggcggacagc tcatttggta gatgtgggtg ttttgtttac atttataatg cagctttatt
      421 taatgctgac agatatagct tgtggcaaat gatagtcaga atgtatgagc agtcataatg
      481 cttctgtctt cttatagtgt gctgctgaaa ataagcagtt cacctctgtt tttattgagg
      541 aaaggatatg agacagctat agcttcgcga ggctatttat tgagttgttt tactagctgt
      601 gaacatgccg ctttatagca gttgtgaaaa tggactttgc tagtgtgtgg gaaaggaaat
      661 aacattgcag tatacaaggg tagtaaaaaa accctctata aataattttt cagactgaag
      721 aatattctca tttaaacagc tagagagcct ggtgattttt gccagctgcc agctcttccc
      781 aggatggcat tgggttaaa
//
LOCUS       KCLJ01000883             426 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 99248cal ultra-conserved element locus
            uce-3503, sequence.
ACCESSION   KCLJ01000883
VERSION     KCLJ01000883.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 426)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 426)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..426
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="99248cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>426
                     /note="ultra-conserved element locus uce-3503"
BASE COUNT          166 a           59 c           76 g          125 t
ORIGIN      
        1 ctcaactaat acagtaatca aataaacctg acaaataact tttttaaagc tgcagaggca
       61 tgctaacaaa tctatttgat caatatatgg gatgtgaaaa aagaggagac aagattgact
      121 gatgaataaa atggaactga cacaaatagg ctgacagcca gtcgcaagtc tctttagggc
      181 aaatgcaatt aacttagaat aatagactca aatttgatgg ttagaaatgc atttttatta
      241 acaatcacag cctgaatcat tatgcactct tatgaataaa attgtagtta tactgaaagt
      301 ctgtgtatac atgtacgtgc cttgttgaag gagagcttta tttttgtgac agaatggttg
      361 tgtgggattt aaaatataaa gcatacacaa gtataaatct aaatattcaa accagtgata
      421 taaaaa
//
LOCUS       KCLJ01000884             632 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 99353cal ultra-conserved element locus
            uce-2195, sequence.
ACCESSION   KCLJ01000884
VERSION     KCLJ01000884.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 632)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 632)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..632
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="99353cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>632
                     /note="ultra-conserved element locus uce-2195"
BASE COUNT          184 a          133 c          150 g          165 t
ORIGIN      
        1 acatgttgga aaggagccac caagagaaag ggcaccttcc cttgggagat ccttccagag
       61 cagccagcag aagctgagaa cttcccttcc tcccccttct tcagctgcta agtgcccaca
      121 ctgcacacgc ctctgagctg gggctccctc tgcactggtc agcctctggc cagagaactg
      181 ggaacaaaaa cgcctttttg aacattgcat gtgcagggat gggaggagga ggggagggga
      241 tgggggaaga ggagaggtac agacacagca ctccttggca gtgatttata gactgggtca
      301 ggcacaaatt gactcgtatg caagaaatgt aaatggaatc gagacttttg atggagaagc
      361 tcattttcag acttaaacgc tttagattaa acacactcac acacaaatgc tggcggggag
      421 ggtgttttat ataatttaca ttacaaatca attcattatc cacagaggca ggttgcactg
      481 attttcaagg atcggagatt tgatgaagag gattcatttc aagaaataaa ccttttaaat
      541 taaccgcaag atgagggaaa tttctttatt taaaaaatgc gccagcccct tctttgtttc
      601 ttttattatt attaatatta ttttccatcc gg
//
LOCUS       KCLJ01000885             641 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 99463cal ultra-conserved element locus
            uce-7282, sequence.
ACCESSION   KCLJ01000885
VERSION     KCLJ01000885.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 641)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 641)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..641
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="99463cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>641
                     /note="ultra-conserved element locus uce-7282"
BASE COUNT          155 a          157 c          190 g          139 t
ORIGIN      
        1 ggatgctggc agaatcccgg gagagccatg gggacagctt tggaaagctc ctggtgctgg
       61 gtgctatggc aggctcagcc tgcctccccg ggagctggca gcacgtgccc caggccccgg
      121 atcagcaccg ggcccatctc tgcatcgctt tcctgatcaa ggtcattcgg tacagctgca
      181 atacctgagc aaactaccta agcagctggg gtggaagttg gcctgaccac tgaaggtcaa
      241 gtgtgcactt atgcatattc aaagctgcct gcaggatcga ttgggtttta attgtttttc
      301 ctggggtttt ggaaggaagt gccaggggca ttgatcagtc ccagacaagg ctgctcacac
      361 tcaggggctg gcagggacca tcactgggag gtgcaagcag cgatgatgaa gggatgaagg
      421 cacagccacc gctggccgag aggaggagcc actgctgtgc tgcgccggaa aataaagttt
      481 tttaattaaa agtggcaatt ctgagccgcc tgctggcagc agccacacaa tcaagagcaa
      541 ggagctttgc tgtttaatat ttaaagacaa cgtttaatct ttaaacagga aagttctctc
      601 tctgactgtt aaagggaggc agaaagcgcc agtggctccc c
//
LOCUS       KCLJ01000886             770 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 99570cal ultra-conserved element locus
            uce-943, sequence.
ACCESSION   KCLJ01000886
VERSION     KCLJ01000886.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 770)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 770)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..770
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="99570cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>770
                     /note="ultra-conserved element locus uce-943"
BASE COUNT          224 a          114 c          149 g          283 t
ORIGIN      
        1 taaatcctaa aagcaccact attttagcat aataaaagaa agtccaaaga gctcctatat
       61 agactactcc agataacttt gcttcatcgg tatttgtagc ttattgtaac ttttttaaag
      121 aagtacagga tcatcatcat catcatattg tacaaaagcg ctttgattaa cacaacggct
      181 atatagtttt ttaattttag gaaaaacctg tggagacagt gacctagtct ttaagagtcc
      241 tttcagtata acgtctgact aaagacatgg cctttaatat ctgttgggaa ggaaatgtcc
      301 agacttttca accttttatt gtatgtttcc ttttccttgt ttacataggg aacaatgttt
      361 atagttgtgt gtacagtggg ggtctacaac aagaagtgta tattttaaaa caatttttta
      421 atgatttaac aattttttgt aaatcatttt tgggcttctg cagctgtaga ttctcactgt
      481 gaattccctt gcttgctcat gcataagtgt atttgcaata ccaaatatac aggtttagta
      541 cttttgcctg ttagtgattg ttttacatgt gtaacgtttt ggttgagatg ttaaatggtg
      601 gaagagtact gtggatgtga atgtgggaag taattttaat catgtgtaat tggtcacagg
      661 gcctaagttg cagtaattaa cttttgctga tttatttaac aatgccttgt tgctttgtat
      721 gcattaacgt ttgggtgtaa agattgtgtg tatatccaac agggagccac
//
LOCUS       KCLJ01000887             655 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 99683cal ultra-conserved element locus
            uce-1389, sequence.
ACCESSION   KCLJ01000887
VERSION     KCLJ01000887.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 655)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 655)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..655
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="99683cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>655
                     /note="ultra-conserved element locus uce-1389"
BASE COUNT          240 a          107 c          116 g          192 t
ORIGIN      
        1 cttaattgag gaatttaaaa acaacgactc aaaagagcac aaatttcaaa gtaaatgaaa
       61 tagggagacc ctttgaaacc caaactttag tgacagcccc tacagagagg ctattttctc
      121 aaaacatgta aaatatgact atagaaagaa agataaggag caagggaatg gcatgtattt
      181 aaaaacatgt gcacactgcc tggtgtttta aacttttgcc ttcctattgc taaaatatca
      241 agaccataaa atttcagata gtgtgcaaaa tgtttatata ttaccaaggt ctccctttaa
      301 aaggtttata cttttacttt atgacctgtc cttgatttga cacttccgct catcagaaag
      361 ggatttataa aataatcctg aaggtgagga acagacatct gtcagggact ggctgagttt
      421 cactttgcga aatttaagaa gggagagaaa tcctgttaag ctctctttag tcaccaatag
      481 acatcaaagg taataattaa agaagacaga cgtcataaaa ataaatttat gtagttcttt
      541 ataatgcaca agcactctag tgtgtaaaac atctattaga gtgaaagaaa atacaacatt
      601 ccaaacgagc aaaaatctgt tttgtttgag gttttttgcc tacttgagta acgtt
//
LOCUS       KCLJ01000888             659 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 99791cal ultra-conserved element locus
            uce-3713, sequence.
ACCESSION   KCLJ01000888
VERSION     KCLJ01000888.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 659)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 659)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..659
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="99791cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>659
                     /note="ultra-conserved element locus uce-3713"
BASE COUNT          247 a           86 c           88 g          238 t
ORIGIN      
        1 tgtacagcat gtttacttaa atatttaact tgtgaaattt aataaaataa caattttaac
       61 agataaggat taaaaaacta ttagaaacat tcatataatt aaaaattaaa attctcagcc
      121 attatcagat gtaggaaaac cacataagaa ttcataaaaa agttttcaag ctccaataag
      181 ttaggtataa tagacctttt ttgtcaaaca caaaaataaa tattattgat tttatgaata
      241 aatacatttt cttaaatgat ttagaaagct ctgtttattc atatacagac agtgtttaga
      301 atatgtagta gccagtatgt ctgcagatat atttatgttg gactgtttag attggcttca
      361 cctctgtaat aatttataac agtttcaatg taaacctgcc attgagcagg tcataaaggt
      421 cctgcatttt aaccatcata atttcagata aacccacaaa actatttctt acaggaaagc
      481 tctagttaat ccttgaatat ctttgggatg gaatttgttt ttatttagga aaatttaaag
      541 agcaataaag gctgcatttt aacagtgttt gatattccag tactggtgat aatttaaaat
      601 atatacattt tgttttgttt tacagcagta acttttcatt gacacttatt aatacaaaa
//
LOCUS       KCLJ01000889             523 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 99898cal ultra-conserved element locus
            uce-1361, sequence.
ACCESSION   KCLJ01000889
VERSION     KCLJ01000889.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 523)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 523)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..523
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="99898cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>523
                     /note="ultra-conserved element locus uce-1361"
BASE COUNT          183 a          111 c           80 g          149 t
ORIGIN      
        1 cctacagggt atgtaaaatt agagtactat tttgatgact ctggaaagaa ggaaatctcc
       61 ttctccttgc tgcaaatgtg ctctggcaaa tgttgattgg aacagaaagg gttaccatac
      121 ctctcaggac attttgataa gatattttaa taccaattta ttaaagtacc agcatactag
      181 tgatattgct gcaattcatt gtacctagaa aactcagcat tttatagagt tctaaggcag
      241 cccaataaag actcgctcca ctctaataaa gcaatactcc gggcaaattt acggttgagt
      301 tctattctaa taaatctcca attgtaaact aatgaaaaga ccccagtata cctccctcat
      361 ccactcacac aaaaggaagc aatttgaaaa tgtttgacaa agtaacactg cacatcatca
      421 gcactgaaga acctcatttc ccgtccatgg agatattgca ttatcattca tattaaagaa
      481 taacccaatg gcacttattt tcaggaaact aaattaccac aca
//
LOCUS       KCLJ01000890             507 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 100006cal ultra-conserved element locus
            uce-180, sequence.
ACCESSION   KCLJ01000890
VERSION     KCLJ01000890.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 507)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 507)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..507
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="100006cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>507
                     /note="ultra-conserved element locus uce-180"
BASE COUNT          184 a           91 c           85 g          147 t
ORIGIN      
        1 ttgaattata ggtctttctt tacctgttgt agtatgaaca ctacctagct tctaaacacc
       61 actacaaagg agatcaggca tgaaatggtc ataagtatta gtttccagta gatttcactt
      121 ttcttttcca agctacagct tgacattttg caaaatccct ggagaccaaa cagtgaaatc
      181 gagttactgc aggagtgaac tgtaaattcc atgaaaccat gtaatatatc ttaacacaga
      241 tggacacagt acattaaaat aactgtggat gataatagaa caataccatc tgttttgtct
      301 ggggaagaca acgcacatca gctacactgt cagtcatatc atatatcttt agtgtcatca
      361 tgtggtagac gacaactcta tatgtcaggc caagtgtaca cttctttagg gattactgaa
      421 aacagtaaaa agttaactgt gaaaaagaat tcataaaaat acttaaaata aacataagtc
      481 tagtacttaa caagcagaca aatgtaa
//
LOCUS       KCLJ01000891             593 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 100115cal ultra-conserved element locus
            uce-6502, sequence.
ACCESSION   KCLJ01000891
VERSION     KCLJ01000891.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 593)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 593)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..593
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="100115cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>593
                     /note="ultra-conserved element locus uce-6502"
BASE COUNT          212 a          107 c           87 g          187 t
ORIGIN      
        1 cagtagcaaa agttaaaaag gtaacatgaa aagaaagatg aaaaaggaat gctgttcaaa
       61 ttgaaggact gcagtttcaa gtttcaatct tgtatcaaaa catctccgcc tcatcttctt
      121 tctcagtcat cacaaatgaa atagtacaaa gaagtacaca aacatcagta caatgctatg
      181 tgtgtactgc tatccaaaaa tcacagttac aaaattatac ctgacatatc aaaaactgac
      241 agtcacatcc tcaagatttt cttctgttca ttcccatgga ccttctttat taataaatct
      301 gacacataaa aagcatctgt atgactaaag tgtcagttac tggaaagacc gttttgatct
      361 acttcttaac ttttagaaga aatattctct tttttatgaa gacagaatct gttcactgac
      421 tgccagcttt caaatgacca cctcttgaag tttaatttta agttttaaat aaatattgta
      481 tgcatgcaga ataattatga tgctctagag agactgtgta taatgacatt gattcttttt
      541 tatctaaaaa tgccaaaccc ttgaggcaga aaagtctgta tttgccacag ata
//
LOCUS       KCLJ01000892             656 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 100222cal ultra-conserved element locus
            uce-7297, sequence.
ACCESSION   KCLJ01000892
VERSION     KCLJ01000892.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 656)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 656)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..656
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="100222cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>656
                     /note="ultra-conserved element locus uce-7297"
BASE COUNT          208 a          164 c          113 g          171 t
ORIGIN      
        1 gggacccgac tataggaatt cttatcctct ataaagctat gtagccttgc acaaacagcc
       61 tttggcatct tgtctctggc ctacctggac agtagcaaaa catgtttatc agaccataaa
      121 aaacctgaac tgcaagcagt tactgaaggt cgctaaactg caaaattcaa acatgcttct
      181 atgctttagc cacacagaca acgataaaac aaagcctcca caaccacctg taataatatg
      241 cctattcagc cagcaattcc aaagtactca gcaacacaag gtagacattt tctgcagctg
      301 gttttacatg tacattcctg ccaaattgct gtctcgtccc ctcttacctt cacattagtc
      361 cggagtgcac agtaacatgc aaaaaacatt gcagtaaaca aggagcatat ggaccagtat
      421 tcagcgtctc tgctctgcac aaacggtaca cacacgatcc cgagcatgtg ctactaagga
      481 gcatccgttc cctctgtcag tttgaaaatg cattgatctc tgtttttctg actacaaaaa
      541 gacatgtctt gaaggcactg agtgaaagct acatatctct tcagcaacta tatatagaaa
      601 tatgcccagt aatttcaatt agcagagaat tcagcatctg aaacttggac ctcagt
//
LOCUS       KCLJ01000893             818 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 100331cal ultra-conserved element locus
            uce-6260, sequence.
ACCESSION   KCLJ01000893
VERSION     KCLJ01000893.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 818)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 818)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..818
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="100331cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>818
                     /note="ultra-conserved element locus uce-6260"
BASE COUNT          252 a          171 c          126 g          269 t
ORIGIN      
        1 acctcatgca ttgtaaatca aatacttcct taacaaattc atataagtca aatgagtgag
       61 ccttagttat gaaacactgt agttgcatgt tctcataaca taaacattta tataactggg
      121 ttattcacag atgaaaatca aatcagtttc agttcagata atcattctgc attaggaaaa
      181 tgaagaaatt aaaagtatgc tccagcaatt tactcttccc aagcagctat cctgcacgct
      241 ctgcagacga tgtcaaaacc tgctgatatc tagcagagtc aactccaagt ttgtgtatcc
      301 cggtccattc tacctttcca tcaggcagta catgtggaaa tggaaaaata gctctctaat
      361 taatcaaagt cagatctgcc tgagcgcctg gagttgctgc tgatccttgt cccagcttct
      421 accatgttct ctctctatgt tttttacctt gaaaacttct gctctgagct gggaatgcct
      481 gaagggcttg cacggtaagt caatgtgaaa ttatctcagc aggaagaagt tgcttttcag
      541 cttaaatgat ttaaggcagc aatttttcac actctcaaac tctgacaaac gcacagattg
      601 cctctcatgt ttgacttcaa aatattcaaa gaaaagctat ttttattaaa aacactctag
      661 agaaaattgt atgtcacttg ttctctgata taacttcatt tctcctgaca gtgacaattt
      721 tcacctcagt acaatttctt tatttttttc caaagctaat tctgcttaat attagtattt
      781 atacaaactc atatcaactt gtctctgtga aatgttca
//
LOCUS       KCLJ01000894             817 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 100443cal ultra-conserved element locus
            uce-7764, sequence.
ACCESSION   KCLJ01000894
VERSION     KCLJ01000894.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 817)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 817)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..817
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="100443cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>817
                     /note="ultra-conserved element locus uce-7764"
BASE COUNT          217 a          182 c          190 g          228 t
ORIGIN      
        1 aatcaaagtg aagagattct ggtagtgcat cttctgctaa aaatctccca gtaatctcat
       61 ctctcagaca ggcacacaac ccaccataat caattctgga tgtgtgggac agcctgggaa
      121 tgttaggtca tggtgagcac cattctgttc ggtgtctctc tttaaagggc cacctaaaag
      181 gccccagact atggccacac aattccttct tgcatccttc tattgagagt atcagggcct
      241 atacagtgct ctccagagtg cttccccttt aagacaggac tgtgcagtct ttatttgctt
      301 gttgaaactg ttcagtttta ggacaggggg ggaggtcaca cctgttgtgg aacttgatag
      361 aaggcttatt tataaacttt cagagcttgg gattcttgca gagctgaatg cgctgatgtc
      421 cggaggggaa ggtcaccgaa atgcttgttt ataaaagcag cagcaactgg aaaaaccata
      481 aaagtctgaa atgatgaaat taccaagcta tttgatcagg cgtatgggct atgtgctctg
      541 tggtcagcca gaaaaacctc gcacgtaaga gtcaaccctg ctggctgctg ccctgaattc
      601 tccttcagag gcgaatgcag tgtgcctgaa gagggcaaaa aataatcagc tgcttagtat
      661 ggtctacttt tgggctgctg gctggtccac tcttaatttg accttgcatg gaaaggggaa
      721 agcctactct gcacttggta tcacagctaa tccactcttt agtttcacaa cttcaaagag
      781 ctacaccact tgttaacatt cagagtgttc ttttagc
//
LOCUS       KCLJ01000895             573 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 100553cal ultra-conserved element locus
            uce-2370, sequence.
ACCESSION   KCLJ01000895
VERSION     KCLJ01000895.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 573)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 573)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..573
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="100553cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>573
                     /note="ultra-conserved element locus uce-2370"
BASE COUNT          155 a          113 c          120 g          185 t
ORIGIN      
        1 tgtgctactc taatcttaga ggctggataa tacggttgga gatttgacat attcctattg
       61 aataaaaatc aggagaccct taccaaaatt gttagcaaaa gggactggca gaactaggta
      121 cagagcgggg tgggtttttt tttttctccc cttcctttcg ctagctgtct aggaggagta
      181 aagcaggtgg ctccccgtgg ctgacttttc atgacaacat gccattagaa attgcggtcc
      241 tgttgatcaa tccactcgac atgacagctt tgccgcaagg cctggctctt tgagcaccag
      301 cgctctggct tttccctcct tttttcccgc actaattggt gaaagttttt actgtgcttg
      361 tggcatagga aattcttttg aacattgtca caatcaagtg ttgacttctt tagaattgca
      421 agtaggttaa gtgagtatca acattaatcc acaaaaggtt ttattaaagt aaaattgggc
      481 attctgggaa tcaattaaaa tattgttcct ttttttgcac acccaaagat gctaccatat
      541 ttgcatctca aaaagtagaa ttgattagtt gca
//
LOCUS       KCLJ01000896             620 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 100663cal ultra-conserved element locus
            uce-8046, sequence.
ACCESSION   KCLJ01000896
VERSION     KCLJ01000896.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 620)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 620)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..620
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="100663cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>620
                     /note="ultra-conserved element locus uce-8046"
BASE COUNT          122 a          169 c          138 g          191 t
ORIGIN      
        1 tgtcatcgga gagtcctgtc cccaaaattc ccagttcctc gtgctctcct ggaggtgcct
       61 gtgcaggctc tgggtgtgcg tcccttcccc gcgcctggcc ctcgcactga cctgcactga
      121 gtgtgtttca ctcactgcct gatctacatt tcagggaagc tgtacaccac taatggtagc
      181 aactcttcat cctcaagtag ccaccatcac gccgcagtat gcggtgccct ttaccctgaa
      241 ctgcgcagcc ggccggccgg cgctggtcga acagacggct gcagtactgg taattgcctc
      301 ccttgattgt gttcactaac tgagtttttg ttttaactta gagggcatgg aagcatgtgc
      361 catcttgtgg ctgtgttctt gctacatctt aatgtcttgt tgttttcctc cccaacattg
      421 ctgaagcact gtctgactct gacgtttagt gtggctctgt aaagaatcca gatccctttg
      481 ctagcctagt attgaaagct cttctaaact agaccctaga agagttgtaa tcattcttgt
      541 tcttcactta ctctcctatc tttgcttttg attgtggaat acaaaggaat cagtctatag
      601 cttgactctg ctacaggtac
//
LOCUS       KCLJ01000897             591 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 100771cal ultra-conserved element locus
            uce-169, sequence.
ACCESSION   KCLJ01000897
VERSION     KCLJ01000897.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 591)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 591)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..591
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="100771cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>591
                     /note="ultra-conserved element locus uce-169"
BASE COUNT          178 a          102 c          136 g          175 t
ORIGIN      
        1 tgaactgctc cttcatattg gcttcttaaa aaggaaaatg taaaaaaagt catagcaagg
       61 aagtattgaa gtactttgtg agttttaacc attttatgca aaccattcct tatcatcaaa
      121 gggttatctt ctgacattgc acggggatag aactatacag taaataatga attgtgggat
      181 gcagccaggc ttgcagaaaa taactatttg agggatggtg catgaacaga aagctgtaat
      241 tttgacaggt ggcaaggtgt cgtgtcacca agcccttcta aagcctcata tctcatacct
      301 attgattaat ggctctaatt aaggaatgaa atcaagcatg tgaagacagg ggatcgcttt
      361 aggtccttgt ttggtagttt tctcttcctg gcgcacaact catccatcta aatatgactg
      421 ctctttcatt tattacagtt ggatgatacc aaaaaggaac tggaggagga gcatgctgtt
      481 cttgtcatgg tcatgcagga acttgatttg gcaagagctg agataaggca atgtgtatga
      541 gcaccgtttg aatgaatgct acaagaccat ttgagccctt tgttggggcg a
//
LOCUS       KCLJ01000898             609 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 100880cal ultra-conserved element locus
            uce-7538, sequence.
ACCESSION   KCLJ01000898
VERSION     KCLJ01000898.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 609)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 609)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..609
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="100880cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>609
                     /note="ultra-conserved element locus uce-7538"
BASE COUNT          162 a          116 c          138 g          193 t
ORIGIN      
        1 aaagagctta ggagagattt gctgctctgg tctttgggac cacagagctc tttcaaataa
       61 atatattaaa acagaggagg agagtgagag gtgaatgaag aaaaatcagg ctttctgctg
      121 aattagcact tgtgtgactg gtgtttagcc ttgatttaat tcgtatttaa gatttctcct
      181 cccagcacat taatataatg tcagtgtaga atgcattgca tggtgtaatt actggagaga
      241 gcaggagttg ggcaagcaga ggtaattgaa cacatggctg tttattacaa caggacagtg
      301 ctcctacgct ggtatttagg gcattaatag gcaagaattg atttgttgtt ttaagatgaa
      361 ttcaatcact gttgcttagg cctttgtttg ctcagaccca gttatgcttt gtttgtgtta
      421 tgtgcccaag aggtttacac accacggcgt ggcattactc atgcagaggg cttgggagca
      481 cagagccatt tacatgaaca aaggacattt ttggctctgt ttatcttcct ctccagtttt
      541 gttgccctct aatctgtctc caccacccca aacatttcta atcaatgcag aggtcctcca
      601 ttcttcctt
//
LOCUS       KCLJ01000899             634 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 100993cal ultra-conserved element locus
            uce-5978, sequence.
ACCESSION   KCLJ01000899
VERSION     KCLJ01000899.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 634)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 634)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..634
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="100993cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>634
                     /note="ultra-conserved element locus uce-5978"
BASE COUNT          191 a          117 c          106 g          220 t
ORIGIN      
        1 cagagtgtat cactggctat tgtccttatc aaacaaagcc ctttcatcag aggttcttta
       61 acacacttta tttctctttt attttgcttt gaaataagcc gggcaacaat taatttcaga
      121 gagagagaga gagaaagaga attcaacaag gatctattac tactctccgc ttctattgct
      181 gtaatgaaaa tctatttcct ttcccttttg tgtcccatat aatttaatgc ccattttatt
      241 aatggtctga aataattacg gaaccttttg tgattctcaa gtatgtttca tttaattgtg
      301 caataaacgc ctaatctctt cctccatctg aagctattat ggcattaaaa ttaacaatta
      361 tgcagcaatg cgcccgggtc catagaaatc actccagata actagacata tataaatcat
      421 tcatgagaac aatttctgaa aagagacgaa gggagagaag ttgtgttgag aatgacattg
      481 ggaagccaag ggcctggtct ctaagaagat agcaacacct ttttttcttc ttttttttcc
      541 cttttttgtt attattattt tactaattgt gttcagtggc atggccatta gcctgacaga
      601 tattttcaga attaattaac tgttagctca gacg
//
LOCUS       KCLJ01000900             525 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 101098cal ultra-conserved element locus
            uce-5510, sequence.
ACCESSION   KCLJ01000900
VERSION     KCLJ01000900.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 525)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 525)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..525
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="101098cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>525
                     /note="ultra-conserved element locus uce-5510"
BASE COUNT          149 a           90 c          119 g          167 t
ORIGIN      
        1 cacgggtgtg atttactggc ctgtgcagtg ccacatgtct ttaaaattat agtgcccgtt
       61 tcctgctgaa ataatttcta catagagagg ctcctattat agcaagagga gcatggacgt
      121 catgatttat tattatttat ggtcccaggg tcttgtttat gcacgatggg ttaggtgctc
      181 aggatagaaa tgccattatg caaatgacat tgaatgtcct tactgagcct aaataatttt
      241 tgtgttggac gattaaacct catctgttat tgatatgggc tgcagtcggg ctattaaaga
      301 gtcccaacag tacttactcc cagtaatggg aaaattgaga ggaagaggct aaacaattgc
      361 ctcaagtgtg ctgtgattgt ctggtaggag tggaacataa cgaaccccct gaatggaaat
      421 cgtgtttact acttagggat aaataaaaac atgcaataaa ttgtgctttg tggtctgaat
      481 tcgcgcacca gagaatttgc gtactttcaa tttacttatt tattt
//
LOCUS       KCLJ01000901             537 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 101205cal ultra-conserved element locus
            uce-7943, sequence.
ACCESSION   KCLJ01000901
VERSION     KCLJ01000901.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 537)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 537)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..537
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="101205cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>537
                     /note="ultra-conserved element locus uce-7943"
BASE COUNT          191 a           80 c          105 g          161 t
ORIGIN      
        1 tgtattatca gtcattatga ttagggtgga caaagtagcg tttgcaactg cattagtaaa
       61 ctcatgattt tgcaaggctg tagtaaacat tcctgtgaag taataagaga atagaatcat
      121 agaatggttt tatgagagaa tacatagagt acactactgt gttaaagctg cttgaaaata
      181 gctgtattat ttactggtct aggaaaacat aatggactat gggtaagaca ttttcccatt
      241 cttaattaaa cttacaacag gaaaaactac cgaagatatg tttcagcctc aatcctatat
      301 aaaacagtca aaacagggat gtgggaaaat gatggagcaa agcacaggta agtgtcaaga
      361 agggcatggg tcttcaccat atgtagcttc aggaagtagg ccagtgaatc cagttgcatt
      421 tttatttttt tggattatat agttcacgat actacactac tgcacaaata aatttaaata
      481 atgttgttgt aacaatatgc tgcacaaagt acctgatgca caaattctaa aatattc
//
LOCUS       KCLJ01000902             648 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 101317cal ultra-conserved element locus
            uce-2451, sequence.
ACCESSION   KCLJ01000902
VERSION     KCLJ01000902.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 648)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 648)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..648
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="101317cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>648
                     /note="ultra-conserved element locus uce-2451"
BASE COUNT          155 a          133 c          142 g          218 t
ORIGIN      
        1 gatcctttta ttgcagcgga tctgtagcaa tttgcactgg ctgggaattt ggaccctaaa
       61 agcttgtgtc aacaaaagaa aaagcggtag aactaagtga agctgttgct gccagagact
      121 tttctattat gtaaccctaa agtagtagtg tttgagtgta gcccatttgg tcatcctaaa
      181 cagaattagg ggggaggtgt gaatgtttca aggaggtctt tgaacgtttc ttcaaatgct
      241 cattgcatct aagatcccag tgtgccttta tttgctccag aataccgctg gactgccaac
      301 aaaggagggc ttgtcctccc aggaattttc tgcattcctc tctggagtag gcatttttct
      361 cagctacaaa ggccctttgg caaattccct ctaatcattg gatttaccct gggctctgat
      421 aggtgccatt catgaacttg gtctgctgtt tgatggggct gaagcattaa tgggatcttt
      481 tcatggtaaa caaaacagag taacattact ggaggaatca caaagctgct cttgtagggc
      541 aatgtggttc tttcttgttc cgctctgttc tccattttcc tttcattttt ttcttatcat
      601 ttccttgctt ttatgaacat gcattctttt tagtggcaga tcttccca
//
LOCUS       KCLJ01000903             602 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 101426cal ultra-conserved element locus
            uce-2886, sequence.
ACCESSION   KCLJ01000903
VERSION     KCLJ01000903.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 602)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 602)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..602
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="101426cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>602
                     /note="ultra-conserved element locus uce-2886"
BASE COUNT          183 a          117 c           95 g          207 t
ORIGIN      
        1 tttctttagt tatttccagt tgaccagccc ctttcatatc catccctctt tcttttaatg
       61 aaatgtattt attaaatctt tactccaggt gattctttaa acttatagca tgaggggaaa
      121 gagagaatat ttcacagaga tgttttattg cactagttcc ttaaaatgtt caagcctgtt
      181 atattgctca acccccgggt gtagaacatg aactcctgag gttgaataga atgattcact
      241 tgtttcacta tgaattcaaa gtggatatga agcataaatc ccctttttcc ctctgtaata
      301 tagtagccat gaatcacaat gtcacgctga gtcgatcata atcttaacac ttcacgcctc
      361 agacaacaac ttgatttgtc aagagaacag gcctgcaagc tgccaatagc attgattccc
      421 attggaaaag aaaggataat taagtcctca gtgagctaat ttattttctt tatttaattc
      481 taagaaatga taaaaatatg tgtagaatca gtcttgcttc ccctaaataa cttttagttc
      541 catttccatt tgttaaattc ttgggatcat acagtagcac attgtgctac atctcaatta
      601 gg
//
LOCUS       KCLJ01000904             616 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 101537cal ultra-conserved element locus
            uce-7412, sequence.
ACCESSION   KCLJ01000904
VERSION     KCLJ01000904.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 616)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 616)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..616
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="101537cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>616
                     /note="ultra-conserved element locus uce-7412"
BASE COUNT          178 a          117 c           96 g          225 t
ORIGIN      
        1 taatctatga aataaagtcg cttttcaaga cttttctttc actagtaaag ctttttatgt
       61 ttgcactatt tacttcaatc agatgttttc aattttactt ttttcttcct gaaaatactt
      121 ccgttggtag tgaccaacag cattattctt tttctctctc ccctattcac ccacccccac
      181 actttaaaaa attgagaaaa gaagaggggg aggaagaaag aaacatcttt tcttaaatga
      241 tttgcaagca tctgtgctct aagctacttt ttatgaacgc tccttagtaa tgactcaagg
      301 taaaaaagca gaaaagcatc caatgttagg aaattgcaat ccaataccat gtaatttaaa
      361 cctgccattg cctctcctgt actaaatgac atacagatgg gtagctctgt tgcctctact
      421 ttgggaacac aattggtctt tttatgagtg tatatacatt tctagctttt ggtcgggagt
      481 gtttatttct tattgcacca tattttaatt acaattagag tgcccctgct gtattttgtc
      541 aactagtttt tgccaatgct tatcaaagtt acctgaatat tttgcaattt atgttattac
      601 tttgggcaga agtaac
//
LOCUS       KCLJ01000905             612 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 101645cal ultra-conserved element locus
            uce-3444, sequence.
ACCESSION   KCLJ01000905
VERSION     KCLJ01000905.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 612)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 612)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..612
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="101645cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>612
                     /note="ultra-conserved element locus uce-3444"
BASE COUNT          199 a           93 c          111 g          209 t
ORIGIN      
        1 ttttatgaca caaaagtgtg tcataaaaat taacatttag ttataacaag gagatgtttt
       61 tatttcactt aacatctgca gcagatgtga aatatgtaat tatttttgta aaagacttca
      121 taactttcac gattcttttg tttggcagat ctttcttcta ttgggcattt cagacaattg
      181 ataagcatta ttcagtggca tatggtctga gtctgacgtg ctttgaaaag agtagagagt
      241 actaataatg aggattctgt gaaaatggga aaaccagcac aacagatatg ctttgagaaa
      301 gtatggggtt ttagcatctt gaaacaatat atcacactca aagggacaga attgggctgc
      361 acaatctgtt agctcattct tgtccaatct ggtctcctcc tttcttttgg agccagcatt
      421 gtcatcaact tgctgaatta tactctgact ggaatgtatt tcaggcacag ggtaatgtat
      481 ctgcttaaat ggaatcctat ctttctacaa aagcttttta agtataataa atttaaaata
      541 tattctatta gcttaaagta aatggttcaa cagtttacat atgtgcagga acaaagaaaa
      601 tgactactta gt
//
LOCUS       KCLJ01000906             576 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 101756cal ultra-conserved element locus
            uce-357, sequence.
ACCESSION   KCLJ01000906
VERSION     KCLJ01000906.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 576)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 576)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..576
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="101756cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>576
                     /note="ultra-conserved element locus uce-357"
BASE COUNT          207 a          105 c           96 g          168 t
ORIGIN      
        1 agcatcactt taaattaaaa ccttcacatt ttcaaaggaa aataaatagt taatggcttc
       61 agaattatta ttcttttcta cacaataaaa atttcccaat gataaaccaa tggcgagaca
      121 cttacatatg caaatacgtt tccatgaaag agttaaagtg ctttataata taaatttgct
      181 ttcagtgcca atataattag attgtaacaa gcaaacccct gcaacataac acagtgaaaa
      241 tttgaaaatt tgattctccc tggcaaacaa ccaagtccct gcgtgtgcac aaacctgaca
      301 ttaataagct acaagagatt acatgattta gaaaagaagc acttggtgtt acaaaatcaa
      361 ataatagatc tctaggctat aattaggaga attgggattc aacaatgaag tcataataat
      421 gtaatttagc tgtaagtaac agagccatgg agtcacatta ggaggtgtga tcacatcttt
      481 cagcaaagct ctgctgtgta gacttattgc tgttcagttt agtctagtac acagcaacct
      541 gttggcacag agctcaggct gacagcctct tgttct
//
LOCUS       KCLJ01000907             773 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 101865cal ultra-conserved element locus
            uce-2344, sequence.
ACCESSION   KCLJ01000907
VERSION     KCLJ01000907.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 773)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 773)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..773
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="101865cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>773
                     /note="ultra-conserved element locus uce-2344"
BASE COUNT          189 a          179 c          217 g          188 t
ORIGIN      
        1 gcctgtctgc tgaagacccc ccattgccaa ggcaaaggtg caatgctcct acctcagctc
       61 gagatgcagc tttgagagag cagctggtcc ctaattgccc agggcctcca ctggcgtcgg
      121 actctcagca gaagaagtgc tgcacacaga gaactgcaga aagcaccttc cccacaaaaa
      181 gtcttcttgt gagggtctgg tgccattttg aaaccaaggt ttcccggggt taaaagccag
      241 catcttaatt cagagtgcca atgttcaatt ttgctttctg ctacaagact agattgcagg
      301 ccagcgagag agtctgggtt agtggcccac tgggtcacct cccatttgtt ttcctcaatt
      361 ttgtgttgtc ataaattcat tccagcccgt tgtggttgat cagtttatct ccgccggggc
      421 agggagcgct gcgagcatga tgtatggcac agagcattgt agccagcctc tccatgaatc
      481 actccagctg tttggtgtca gccccaaagc aaacagggcc cggccgctga gcattgacta
      541 cgatgagctc agtatgggaa gagacatgac gtatgaatgt ttatttaata attctctaat
      601 atttccaacg gagtgtggct gtgccttctg ggaggggtga aaggggggga ggttgaagag
      661 ggaaactcta atctgttggg gtgggtcata aatcaggcag acaacatcat taatcaggga
      721 tgggacagaa gtggaaggag gtgggactga agctgccatc ctcgctggga agg
//
LOCUS       KCLJ01000908             425 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 101977cal ultra-conserved element locus
            uce-4918, sequence.
ACCESSION   KCLJ01000908
VERSION     KCLJ01000908.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 425)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 425)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..425
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="101977cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>425
                     /note="ultra-conserved element locus uce-4918"
BASE COUNT          134 a           90 c           98 g          103 t
ORIGIN      
        1 ccctaccaaa cccatttccc ttttattaag accacaaaaa tgagcagacc cagagaataa
       61 aagctgaaac aatcaaaagg agaaaagaga gactagagag gggagaacga acaacccaaa
      121 ataaaagaaa tcaaaactaa ccagctgaat tgggagttga gggtgagtta gcctggcttc
      181 catgggctga cacgttggta gccgtgacag ctgttttggc agcataaata ttggcttcct
      241 cttgaaattt acctatgttc ttcttgtacc ggattctctt atttccaaac cagtttgata
      301 cctagagcga gttcaagaaa agacaagttt cagctctgcc aagtgaaggg ggattagttc
      361 aggtctcagt tttcccagca ccttccaccc caagcccagg aaaggtgatg ggttttgtgt
      421 gggtg
//
LOCUS       KCLJ01000909            1410 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 102079cal ultra-conserved element locus
            uce-103, sequence.
ACCESSION   KCLJ01000909
VERSION     KCLJ01000909.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 1410)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1410)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1410
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="102079cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>1410
                     /note="ultra-conserved element locus uce-103"
BASE COUNT          443 a          269 c          283 g          415 t
ORIGIN      
        1 gttatagctt aatacagaaa gagacgtgac tgtctgcatg caacataggc tcaccaaacc
       61 acaccccagt aagactcagt gcccatttat ccttctgcag atgaaaatag gcacattcgt
      121 aaaggaaaat tatttctgta tgtatctagc tgtaaagtcc cgacttgttt tttaacccaa
      181 tgacatcacc acacacaagt tgggccccac agcacagatg tgctttcatg tgcagtgata
      241 tcactttcac taaaacacta aaggcatgac tttcaagcag ttttaaaatt cagatcagtt
      301 ctgctcatat ttaatccaga catgttggtt taacaccaag ccaagccaga ccttttaatg
      361 ttcagtggcc atgatataaa atttttcact gtgttgcacc aataaattca gaagtgcagt
      421 gtaatttgct atagtcacag agactcttgt gaaatttaag caagagtgga aagcaaccct
      481 tcattttgtg ctttatttca gctcctgtgt ggacattact gatgcttgtt ttggtcatgt
      541 tgagacttaa aggtaggatg tgaaccaccg tcagactcaa gttgggaaca gctgtggcat
      601 tatttgggag ttatttaaaa caaacaatgg aaagaaagtg ccacttgaca ctgacagcaa
      661 gtatctctgt tcattttgca ttgtcaatag ctccagtggt agctctattc ttttgacagc
      721 taaaagcaga tgtgtgggtt aagtatggga gcaattcaaa tgtccatagt aaactgcagg
      781 ggggcagaga gagctcagag agcagcagct ttaaagtaat tgactaatac agtaaggata
      841 ttaaagtcat ttagtgccaa aagggaacac actgatcctt gaccctgagc cactttggag
      901 taatctagta ttcaatccag cgtgtaatga ctgccaggcc tgtcaatcct ccgggctctc
      961 cagtcaaatg cctgtggcta ctattggctt atggtaaaag gacaaaaatg caaggaaatg
     1021 cctctcaatc aggctatgat gtgataatgt tattgctcca atgtattcta tattgtccct
     1081 gcatagttta atctgttgag atccatgtca aaaattgccc ttgttcccca gaggtcttta
     1141 ctcaaccttt tagtaataca agtggatttg aaaggagagg ggtaactcac ttgatgaatg
     1201 gtttccagtt aatataaaaa ataagaggtc aactgtggct taaaggctaa ccatggaacg
     1261 tataaattag aataagcatg ctggtaatct gattagtaag ccttgctctt catttacccc
     1321 agtgggtaaa atattttcca ataaataata ttgacacaga aatttattta caagaaagac
     1381 ataattccta caaagtttac atgttgagag
//
LOCUS       KCLJ01000910             947 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 102181cal ultra-conserved element locus
            uce-882, sequence.
ACCESSION   KCLJ01000910
VERSION     KCLJ01000910.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 947)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 947)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..947
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="102181cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>947
                     /note="ultra-conserved element locus uce-882"
BASE COUNT          311 a          186 c          182 g          268 t
ORIGIN      
        1 ggagtaagaa ttgtctttcc atttttctca tgccttatct ttcaactggt atctggaact
       61 tcttgacact cttctttaac tgtttttctg ccaataggac agaagactga taggcttagg
      121 tttagcaaat aaatcaataa aaatagggaa gccatctgca aggaagatga aatctaggaa
      181 gagaggcaaa ggcatgagtg aaactctgca atgcaatttt aattagcatg ccaaatgcag
      241 gtgtacgaac taggagactg ggaaatattt tactgtaaac atacttccag gctaactagc
      301 aatgctaatg tcaaggtaac aaagaaaatc tgcctgcaca ctaatttctc actgcagctg
      361 ttggggtgtt agattagaag cctgtatacc tttctcaaga atattaaagc agactgtcta
      421 accgcctgtg tttgtcctag tagcctcatt cttgctgcta gcagagcatg tcccaactgt
      481 tgtcaattta tcaatgtaac gtgcactagt gggcacagtt tgagcagcca ttaggacagg
      541 tgcctctatc catcacagcc agtcacttat tccaccttgt caggaaaact aaatggagct
      601 tttggagaaa tgtaaacaac tctctaatgg acaatcaaag ccccactttc tgaagcaaac
      661 aagaggaagg aatcttttag tcgtatttta agtgttaata tgttgaaatt taaaaatggg
      721 aaaagaaaat aacaaaatca ggtgcataca ctgagaaaat tgggattacg tgccattaac
      781 atgctgaaaa gagcacctct ttgtctgtct taatttcgcc agcctaaaaa caacagcaaa
      841 ataggacgcc ccaaaataaa tcagctcagt atatttaggg gcttttcttg caagcttttc
      901 atcttgataa aaatacctca cgcaattagg cgattccatt taccaaa
//
LOCUS       KCLJ01000911             704 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 102294cal ultra-conserved element locus
            uce-5564, sequence.
ACCESSION   KCLJ01000911
VERSION     KCLJ01000911.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 704)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 704)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..704
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="102294cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>704
                     /note="ultra-conserved element locus uce-5564"
BASE COUNT          181 a          172 c          158 g          193 t
ORIGIN      
        1 ggagttttgc cattgacttc aaggagacaa gaagcaaatc gggccctctg cttgcaaatc
       61 cagtctttat agttctttcc agatactaaa taaaactgtg cttggaagtc atttcaatgc
      121 cagcaagctg ggccagtttg ccacggattt cccaacaatg taatgtttat taggatacaa
      181 ataaagcgtc ttcttcacag tgcaatgtgc aatttccttc tcagtaaaat ataaaggtgc
      241 cttatgtgca aacaatttta gcatttctgc catcttactg acaagaaact cccagctgtt
      301 ataatttgtc tcatccttct ctctcttgta gaacagcctt tgttcctttt tgcagtgcca
      361 gggacttgct gagctccacc tgatgtgatt tgtccaggca ttaataatgc atcttcaaga
      421 tgcaagatgc atgaattcct ttagtaacag atccaccggc agactgccgc accgtattgt
      481 gccattttcc cgagatgggg gaggcacgag ggccacacag gcataggtca tccggtctgg
      541 gagcagggtc ctcttatcgc tacattctca agatgaggtc agaatgagga taatgaccac
      601 ctcaggacac gttcctccag caggcaggtc cttggacgac ctgaggtgtc aggagagctg
      661 gcaagcagct gccccgctgg cgagtgctgt ccctaaacat tacc
//
LOCUS       KCLJ01000912             446 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 102403cal ultra-conserved element locus
            uce-2057, sequence.
ACCESSION   KCLJ01000912
VERSION     KCLJ01000912.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 446)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 446)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..446
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="102403cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>446
                     /note="ultra-conserved element locus uce-2057"
BASE COUNT          184 a           63 c           71 g          128 t
ORIGIN      
        1 atatacaaaa tttcaaagat aaatacaata tttatagttg atatgttaca aaataaattc
       61 ccttagtgac tgcaagtgtt tatgtgaaag aaagtgttgc aatggataag actattttat
      121 tccttatagc gatcataagg aataaaatct gctttaagtg gatctgaaaa aaattcaaga
      181 caagtgtata aatatttagc tacaactttg gcaaaatcac aaaagtctac aattttataa
      241 ccacatacaa aacacattag ggaagaagga tctagaagtc aaaaggacaa ttttctggta
      301 caagaaacat agacttcaca gtagcctaaa atgcaatagt atacagtgct agcaaaagtt
      361 gaaaaaatgt tgcagatcac acttaacagg aagctctagc agtggaagta tattaaacca
      421 acagacagta gcaatttctt tttttt
//
LOCUS       KCLJ01000913             433 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 102509cal ultra-conserved element locus
            uce-3533, sequence.
ACCESSION   KCLJ01000913
VERSION     KCLJ01000913.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 433)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 433)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..433
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="102509cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>433
                     /note="ultra-conserved element locus uce-3533"
BASE COUNT          131 a           77 c           88 g          137 t
ORIGIN      
        1 ttttaaagat gctttgacag tgtttcatca gttcaaaaac tcttgagatg tttattatct
       61 tctcagagaa gatgcttatc tatattttat ggtcagcagt tcacagagga gtaaataggt
      121 tgggtgtaga agaaaataaa aaaggtgttt ctacttactg ttaggtgata ctgcctccat
      181 atttctgggc aagcctggaa aataaaaata ttgatcagct aggagcatga aacaaggtgc
      241 tttacagcct gttggttttg gcataacaca gtatccactg gtgtcggtca caggaaaata
      301 agaagcttaa ctgaaagggt ctgcatttca gcttcaaaaa cccggctaga cagtttaatt
      361 gaattttaca ctggtttaac acactccctg ccattgtcag aaagccagta acagttttct
      421 ctctgccctt ttt
//
LOCUS       KCLJ01000914             394 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 102615cal ultra-conserved element locus
            uce-4757, sequence.
ACCESSION   KCLJ01000914
VERSION     KCLJ01000914.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 394)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 394)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..394
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="102615cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>394
                     /note="ultra-conserved element locus uce-4757"
BASE COUNT          116 a           58 c           89 g          131 t
ORIGIN      
        1 gtggtgtata gtatcctcag ggtaacttgt gcactaaagc tgttttcttt cccactctgt
       61 agaggtatct cattaagtga gatctgcact agtgtcatta ttaagttttc atgtgtttct
      121 cagttttgat gctaatcttc atgtgtgtga acagcaccaa tgtggttatg aattattcag
      181 aaatagagtc taaggttcga gaagcaacca atgatgatcc gtggggacct tcagggcaac
      241 tcatgggaga gattgccaag taagtgataa tttgactcag tgatgaagaa aagaaaggta
      301 cattttatat aagaatgtga aatttgatgc taaatcaact ctgtggtgtt caggctgata
      361 atgcaaaagt tgctgttttt taatgcataa tcat
//
LOCUS       KCLJ01000915             511 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 102722cal ultra-conserved element locus
            uce-3025, sequence.
ACCESSION   KCLJ01000915
VERSION     KCLJ01000915.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 511)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 511)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..511
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="102722cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>511
                     /note="ultra-conserved element locus uce-3025"
BASE COUNT          169 a          112 c          121 g          109 t
ORIGIN      
        1 aaaaattaag tgctaaatca agcaggttaa aacaaagaga ttgcgctgcg aggctggtct
       61 aacataaaaa cactaaagtt cccaagaaat tactacacta cccaataata cttgtgaata
      121 aaggaagagt ttggcccact gcacaggttt gggcacaaaa gtgcttgcta agctatctat
      181 ttcacacatg caacgacaga aggttcgata ttcattcgat cgatgactga aaaggcacaa
      241 tggcaaaatc ggacggactt cttttcaaat acagatctcc gatgtccccc tacagtctgc
      301 agtcgcacgg ctggtggtgt ggcacagacg gagcaagggt tacatcaagg ctgttctctg
      361 gaccgtgcaa acagtctaga ccaatgacct gcagcatcgt gccctttgaa gaagaggcaa
      421 gttcagtcac gacgaagaaa aatcaaggcg tacccctttt aacaataggg agcagctcgt
      481 ggctgcaaag aggtaagcag gggtaagcaa a
//
LOCUS       KCLJ01000916             723 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 102833cal ultra-conserved element locus
            uce-625, sequence.
ACCESSION   KCLJ01000916
VERSION     KCLJ01000916.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 723)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 723)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..723
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="102833cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>723
                     /note="ultra-conserved element locus uce-625"
BASE COUNT          208 a          135 c          146 g          234 t
ORIGIN      
        1 acctaaatca agcataaaca atagagcagc ttgaaaggtt tggtctacga aaattgtcac
       61 agtcgaggaa gactgtttcc tctgtttaat ctgtcactat atttctcaaa acatgacact
      121 ccttgaacat aatatacttt gatgataaac tagattaact ttcccagtac aaatgaaagg
      181 ccacctgttg ccagaatgcc catattcctt gttggctgtc ttgtagctgt catcacttca
      241 atgcaatctg cgcccaacat gctggaatat aatgaatatg tcaggagttg gaggtcagcc
      301 atcaaagtac atgaaaactt ggcttgcata cagtgtcagc atggaggcct cgcctatcat
      361 cttgtgcaaa ggatttctgc accacttgat ttgtttgcag agggcttgtt tctgttggat
      421 ggaacacatt tacggagagg ctttttgaca gcccattcaa acattttcaa tttggaaaat
      481 ggtgcttcct gtttcaagct ctataagtga tggatgctgt gaaatgccac tgtagctgat
      541 catgctattg ttattatttt agcatgaaaa gagccatgat gagccttgaa gtattttgat
      601 gagagaaaac aatagaatag gaatgcagca tactatcaaa ttctgttcct tttgtatggt
      661 gagcagaacc ttctttattc atccttggtt gacattatag atctgtttgt tagctttgta
      721 att
//
LOCUS       KCLJ01000917             385 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 102944cal ultra-conserved element locus
            uce-7929, sequence.
ACCESSION   KCLJ01000917
VERSION     KCLJ01000917.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 385)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 385)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..385
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="102944cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>385
                     /note="ultra-conserved element locus uce-7929"
BASE COUNT          134 a           76 c           65 g          110 t
ORIGIN      
        1 caagcataaa accactgcag caacggggaa aaaaaatcag cttgaaaata attaaacagc
       61 aaggcagcca cccataatga tattcagcag aacacattag ggacagtttg ctgggaatgc
      121 acaagagcac tccagttgtt taattaacat tgaaacggcg gttccacaag aactaaaaat
      181 cctgttaatt tatgtgtctc ttaatgatgc tcatttaaat actgtcaact tttctccagt
      241 ttaatattca tgatttttag tcattaaaac accactctca gcttgtggat tcaccgagaa
      301 acacaaattg tttgatgatg atgtcagttc tttaaaaagc ccttaaagtg taaatctctc
      361 aatgctcatc acgagggtca ttgta
//
LOCUS       KCLJ01000918             688 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 103046cal ultra-conserved element locus
            uce-6714, sequence.
ACCESSION   KCLJ01000918
VERSION     KCLJ01000918.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 688)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 688)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..688
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="103046cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>688
                     /note="ultra-conserved element locus uce-6714"
BASE COUNT          222 a          114 c          124 g          228 t
ORIGIN      
        1 aatcagcact gcccttctta aggtcagggg aacatatcaa aacattcata tatttaaata
       61 tgtattgtca ttttaatagg cactgtggat agtttaattt gtatctgtat taaattaaac
      121 atatggtgaa cagggtataa tagattttct ataatttagc tgccaatgtg gcaacagaag
      181 ccagttactc tcaccagcag acttgtcagt ggtttgttta ctagcttatt tgaattaaaa
      241 taaagcttcg cttctgctga ctgcacatca ttatctatga gaccataatc ctgctagcaa
      301 atcctatatc ttccagaact ggctcttttg tttgggatta ctgagagctt agcctataac
      361 aaagaggaat aaggcatccc tctcatcctc gtaattaagt gtggggagta atttagaaac
      421 aaacccagaa agatgtacaa tttggagttc tgcttctata caggattggg gaacagaaga
      481 caaacactga ttatgttagc acaatattta aactattcag gaattcagct tttaaaaaga
      541 aatagcaact atcaataaag tattaagttg ttttactctg gagacatttt ttacctgtct
      601 gaaggtatgc tggcaaattt gggtggagct tgaagaccat ttaaaactgc atgcatacat
      661 tatatcactt tgttaagatc tttatttt
//
LOCUS       KCLJ01000919             352 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 103158cal ultra-conserved element locus
            uce-4930, sequence.
ACCESSION   KCLJ01000919
VERSION     KCLJ01000919.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 352)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 352)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..352
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="103158cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>352
                     /note="ultra-conserved element locus uce-4930"
BASE COUNT           95 a           65 c           92 g          100 t
ORIGIN      
        1 gggtgcggga gcgggcggct gccagggaag atgaatggtt ttaatcacgc cgctcacagg
       61 gcaccatctg aagtttcgtg taagttatga tagcgacagt ttgcacgaaa attgtatttc
      121 caggcttcat tgactggctt aatgagaatc tttacgtgtc agatattaaa ttaagaaatt
      181 aaagagctgt ttcggtgtgt atagactcca ctgagctgct tcttccagat caatcaggaa
      241 cgcgcctcta gaaaagatgg gagaagcctt tgattttctg tcaccgggga agtgaatcta
      301 atacgccttg gcacctaatt catgttttat taaaaggcat gaggtggatg ct
//
LOCUS       KCLJ01000920             512 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 103264cal ultra-conserved element locus
            uce-7909, sequence.
ACCESSION   KCLJ01000920
VERSION     KCLJ01000920.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 512)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 512)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..512
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="103264cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>512
                     /note="ultra-conserved element locus uce-7909"
BASE COUNT          153 a           78 c          124 g          157 t
ORIGIN      
        1 aaaagagaga caggcggccc ctgtcacaca cagtctcatg acagagaaag agataaagag
       61 gagagtaaaa gagacagaga gaggagagat agaggacgcc ctattcctat taatgaccgc
      121 cattcagtta tagtccaatg aagttaactt tttttaatgt tatacctaca aattatactc
      181 tcacatagcc tgtatataag tgacaagcaa aaaaggaaag taacaaaagt tttttttttc
      241 tttctcttct ttaggtttat gaggtctgca ttgttaccaa gaagtgatat ggtttgcagc
      301 tgtatgagct ttacttttgg tatcctggtt cttttgtgcc catttggttt gactagacca
      361 gtttttgtta gctactggtg caatatacat gctgtcagag gtagagtgaa actttttgcc
      421 actgaggaga ctgtagcaaa acaggaggag aggaggaaga ggaggaggag atagagctca
      481 gagttggggg gttgtttctt tttttttctt tt
//
LOCUS       KCLJ01000921             445 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 103364cal ultra-conserved element locus
            uce-2127, sequence.
ACCESSION   KCLJ01000921
VERSION     KCLJ01000921.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 445)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 445)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..445
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="103364cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>445
                     /note="ultra-conserved element locus uce-2127"
BASE COUNT          137 a           81 c           97 g          130 t
ORIGIN      
        1 agaataaata aactaattct gtgctgatac aaaatcaaaa gcaatttaat taaagactct
       61 taagttttaa agggttttaa atgctatacg ttttggggaa atatcagaaa atgtagcttg
      121 actgacgtca gttctcatct ctgggatggg aggccatttg ctattctgtt taaggcaggc
      181 tggattgtct tattttggag ccagcttggt ggggggtttt ctttgctgct gcttcagagc
      241 tctgagcttc aaaggctgaa attaatggtg aacaaaattg tgcggctctg accatcccat
      301 gcggggcaaa cccatcgagg gttatcatta agtaaagaaa taaagaaaaa aaaaccctgc
      361 cagttccaag aaaacctcat cagataatga cctctgtgat tgggttttca ttaccaaaca
      421 gcatccagag attgtctgcc ccata
//
LOCUS       KCLJ01000922             464 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 103468cal ultra-conserved element locus
            uce-6606, sequence.
ACCESSION   KCLJ01000922
VERSION     KCLJ01000922.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 464)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 464)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..464
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="103468cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>464
                     /note="ultra-conserved element locus uce-6606"
BASE COUNT           99 a          171 c          101 g           93 t
ORIGIN      
        1 aaatccaaat tgatccatct ctgctccggc aaagctggta ccaacgcaca catccagccc
       61 tcgcagttca gcccctggct tgtgcctttg caagcacacg accgggtcac cccttctcca
      121 cccactcgcc agggacccca gccccgcact cacctatctg gatattgttg gggaaattgg
      181 cccctaacac cgcccctagg aaactggtgc agaagaaggc aaaaatgtgc tgcatattcc
      241 cttttgcatt ggcgaaaaag aagcccagtt ccaagcatag atttgatttt tcccccgctc
      301 tgctctcttt agctgcctcg cctcccctcc gctgcgcctc cgggatgctc tcccccgctc
      361 cggctccagc gctgacactg ccgctgagca gcgcctggca gcaggattaa ctgagccccg
      421 agaggaagaa agagagcccg ctcctcatct cccccgccac acac
//
LOCUS       KCLJ01000923             561 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 103574cal ultra-conserved element locus
            uce-2734, sequence.
ACCESSION   KCLJ01000923
VERSION     KCLJ01000923.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 561)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 561)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..561
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="103574cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>561
                     /note="ultra-conserved element locus uce-2734"
BASE COUNT          116 a          161 c          110 g          174 t
ORIGIN      
        1 tttatttctg taacttgatc atattggcag ggatattatt ttcttccatt cattctcatc
       61 agagaagaaa aggccttggc ctcatcccca gcaagccccc cataaggcgc tgtagcctct
      121 gccttccttc tctccttcca gggctataaa ttaatatctc atcattgacc ataatatgcc
      181 ctgtaactct gtttattatt actgcgtatt ttagacaggt ggtaagtatt ggcacttttt
      241 attatgctga taaacaatgt tggactgcca ggtgaaatct gttgtcagag tgatttctca
      301 cttccctgta gcctctcatg gatttctgcc tgggctaagg gagtgcagag ccccctgcct
      361 tctgcagcac cccctctccc gtggggcgcc agctgctgcc actccttccc acggcacgct
      421 ttcaagggac ataaagccac aaacacaagt gccttccctt gcttctgatc ctcgtttccc
      481 tcatggttac tgctgctctc tcagatccat tcctagcagc attggaggtc ctgccctcct
      541 gaactgctgt tgttcccgag a
//
LOCUS       KCLJ01000924             795 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 103684cal ultra-conserved element locus
            uce-1754, sequence.
ACCESSION   KCLJ01000924
VERSION     KCLJ01000924.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 795)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 795)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..795
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="103684cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>795
                     /note="ultra-conserved element locus uce-1754"
BASE COUNT          260 a          172 c          135 g          228 t
ORIGIN      
        1 aaacttgaac aaaaaagaga gacatctgag ctaatgaaaa taaagacctc cactcacatg
       61 agaactgggc cctcctgcca tatttcattg cacttaggag gggagacagc cccagtttca
      121 ttccctgaac cactggtctc acatagaact gaaaagcagc agaagaaagt cttctttgct
      181 gtgttactat acacatcaga catctctaat tagacagcaa caaaatttta ttaataggct
      241 ggacattatg gaatgagctt gttataaatg ggccctgtca aagccttatt cagctaccaa
      301 atgagtattc tcagttcact gctcgcatct gaagcatcac cgctggtgcc ggataacaaa
      361 tgattgctat taaccgtatt gttagtaatg atggctgaaa acaaacaaaa acccataaat
      421 aacagtctac agaaaaatta acccataaac ttgatagata tccagctgag aaataataaa
      481 tgacactttg gatcctgctg ggagaagcta gtggtttttg ttttcttctc tgtcattaac
      541 acattttctg tgctaaaaat tagattctga tatataatta tcaacgcttc cagatattaa
      601 ttctgctatc gctccctctg cttctctgct ggttgggtgt aatgttattc acagattact
      661 ctgagaaaac acatcaaaca cttaacagag caggtcaaag tgacaagcag cttttgctga
      721 caacaccaac ctgcacagcc ttttttaccc cggacgcaaa acaaatttct catattaatt
      781 aactctggtt tcttt
//
LOCUS       KCLJ01000925             750 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 103796cal ultra-conserved element locus
            uce-959, sequence.
ACCESSION   KCLJ01000925
VERSION     KCLJ01000925.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 750)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 750)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..750
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="103796cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>750
                     /note="ultra-conserved element locus uce-959"
BASE COUNT          256 a          141 c          130 g          223 t
ORIGIN      
        1 tgtgatagca tagatgttgt tattaaagga agaaatatga catcccattt aatttcctct
       61 gaaacaagac aatctggctt accaaatata gcctgacaaa gaaaaataga aatttcctga
      121 tcaaagatcc aagagtgcag tgctccacct taaatccctc ccacctatta ggtccccctt
      181 tagacaagac agagaaacaa atttctcaca catcaatgat gcttccataa tcaatttcaa
      241 atagcccctt gcatagggat gcaaatctta gctttctctt aataaagcct tttagaagat
      301 ggatgtactg atctgatatt attaaacgaa aagtggtctc tttttaatct agagatgcag
      361 gggcgttagt aacagagtga atcaaaggcc tggtctcttt ctcttcctaa ttatcaatag
      421 tgttttataa tcttattaat attgatacac agtatactga agatctgtta acgtataatg
      481 tatgtggagg ataattaacg agatccgagt cagatcaatc gcctatttga cagaaaacgg
      541 tgtgtggctt ataaattata catatgctag gtatggctag aaatgtttaa agtttcagtc
      601 caatccttcc agtacagcac tgggaaaact gatgaactta aaggcacagt cccttgcctg
      661 ttaggtttat actgtacact cagaggaata actcttattt aaaaatcaaa gagttccatt
      721 aactgccaag atctcaaagc agcacagaaa
//
LOCUS       KCLJ01000926             382 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 104007cal ultra-conserved element locus
            uce-5189, sequence.
ACCESSION   KCLJ01000926
VERSION     KCLJ01000926.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 382)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 382)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..382
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="104007cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>382
                     /note="ultra-conserved element locus uce-5189"
BASE COUNT          136 a           90 c           71 g           85 t
ORIGIN      
        1 ctccatttcc taggcagaag aattataccc ctgctgtgtt ctaatcaacc aaccatcatc
       61 aagacaatca aaataatttg cctaaattag ccaatcaaga caccctgcaa actgcagaat
      121 gcgagaagct gcaccagaaa tcatcagagt tgattattat actaataatc acgttaaaaa
      181 cctaatgaga tgaggaaatt ggaagcttgc tggagcaact ctctattacc tcaacatgct
      241 gggaactaat tatatagact gtaattaaaa caaaaacaaa cccaagccca ggcctggcga
      301 agttaatcgt tggtccagta atgaagggct gggacagcag acagggacaa acactgacag
      361 tcccaagtgc tcctctgcag cc
//
LOCUS       KCLJ01000927             493 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 104107cal ultra-conserved element locus
            uce-6263, sequence.
ACCESSION   KCLJ01000927
VERSION     KCLJ01000927.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 493)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 493)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..493
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="104107cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>493
                     /note="ultra-conserved element locus uce-6263"
BASE COUNT          184 a           85 c           79 g          145 t
ORIGIN      
        1 aagtaggtag atattaaagg ttacccagat ggtttatata ttactataat aatcttgttc
       61 atagaaactc tcacaaagaa aataattaat cataaacata ctgtgatccc cttaaagcag
      121 cgactgtttt aagttgaaat cccataatgg ctatgacctc taaccctgat gtaactgttt
      181 ctatcctggc tactaaagtg gctgctcatg aaaggccatc aaatacagaa gtaaatgcaa
      241 aggttaacaa agttagtgga ccaaacaaac ttgatactga gaatgaactt tcacatgtag
      301 caagaaaata aacaccactc ttccagactg atctacacag gaggtttgag atgccaaaat
      361 attaaatgtt attaagcaca taatctctat tttacagata agtgtttact ctgggggtta
      421 ccatcctttt atattgataa aaagtcttcg ctcaaattaa aaaagaaaaa aagttcatgc
      481 attttcagtg aga
//
LOCUS       KCLJ01000928             440 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 104212cal ultra-conserved element locus
            uce-6640, sequence.
ACCESSION   KCLJ01000928
VERSION     KCLJ01000928.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 440)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 440)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..440
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="104212cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>440
                     /note="ultra-conserved element locus uce-6640"
BASE COUNT          129 a           86 c           73 g          152 t
ORIGIN      
        1 ccttgcttag aatactaatg tttacaataa tgcagtgagt cccaatttgg ttttgattgc
       61 aataaactgg aggcaaacgt gcaaactttt gctaatttaa gttgatttta cctttatcgt
      121 tttgcatatt acatgatcta gagccacaca aacaaaggct tgtttggact taccatgctt
      181 tccttttcag aaaacagaat tcaaaaacac tttaaaaaaa tcagtatgtg taattgctaa
      241 cacctgctat gtgttactaa cagatgtttc ttacttacct aagggaactg ttataattac
      301 actgtacgct tattggaatg gcatttaacc aagatagttt aggaacttta ggtggtgact
      361 ttgtgttctt tcattcatct ttccgacagc caggcctcct attcaccaaa cttcagcaca
      421 atgctctgtg tgttcagcct
//
LOCUS       KCLJ01000929             713 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 104314cal ultra-conserved element locus
            uce-3860, sequence.
ACCESSION   KCLJ01000929
VERSION     KCLJ01000929.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 713)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 713)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..713
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="104314cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>713
                     /note="ultra-conserved element locus uce-3860"
BASE COUNT          205 a          151 c          131 g          226 t
ORIGIN      
        1 acaggaatgg cagacattta tctcactcag atcactttga ctgaggtatt tacagcccag
       61 atgatattta gatttcccat tctccattct ttcattctgt atcatatatt taggcttagc
      121 cagtgctctc tacgtggttg agatctccct ggcagtgaca aacctttgga tctagtagct
      181 ggttttcagt ctcattagtg agtgaagtag ttgtaagtta atgtaaatcc agcaatcccc
      241 acaaactgtt ctgatataat cacagatccc aggaaaagat tgtgcagctt cttacctgca
      301 gctcctttga gactctctct aagtggttag ttatcttttt tattaggtca ctatacatct
      361 gttccgaatg ctgctggcat acacacttat acacacaact gcagaaacaa atacaggaac
      421 aaacaatgaa cttacaacag tttgcaatga agggtaacac acttcaaaac atttggttca
      481 agttttaatt tagaggatta tagagttaac tgaatgattt ctaaggttgg aatgagctcc
      541 agcaggctct tagggctccc tggaggctcc agggtgtcca tcccattttt taacttacaa
      601 tgagtcctct tacagtgcac ttccaaacag ccaggacaat tctgtcaata gcacacctac
      661 ttctggcttt tgtctctcat ttgtgaatga agaaataagc aggtttaata att
//
LOCUS       KCLJ01000930             386 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 104420cal ultra-conserved element locus
            uce-3642, sequence.
ACCESSION   KCLJ01000930
VERSION     KCLJ01000930.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 386)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 386)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..386
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="104420cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>386
                     /note="ultra-conserved element locus uce-3642"
BASE COUNT          105 a           76 c           82 g          123 t
ORIGIN      
        1 acatttccac actttctcct gggttcatac aataactgag ttaccctact ggctgcctta
       61 ctgaacagag acctggtatt gattacctat cacactggca tcagaactac tcttaggatt
      121 caattttttt gttgttttgc atattttatt gatcaaaagt ggtaaatgag catcaagcgt
      181 gcaagaagac gatgaattgt ttacttgcat aaaataacct ttcaataagg gaagatgcat
      241 tgctcacact tttggtgctg ttctgctgcc cgaagcagat ggcattcagc tgctattgat
      301 ttgctcctat agttacagag cagcatgtaa caaggcatgc tcatttctct gaaagagagg
      361 tgaggttttt tgccagggtg gcagga
//
LOCUS       KCLJ01000931             605 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 104516cal ultra-conserved element locus
            uce-3439, sequence.
ACCESSION   KCLJ01000931
VERSION     KCLJ01000931.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 605)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 605)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..605
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="104516cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>605
                     /note="ultra-conserved element locus uce-3439"
BASE COUNT          182 a          124 c           96 g          203 t
ORIGIN      
        1 cagtggactc taatacctct gatctcattt ccttcttata attgctgagc acacacacgg
       61 tttaatacac gaacttgtac ctttcatatt gtcagaagaa ctatcagaat acttacacta
      121 aatccttgta cattttgcct tattttttac gtacctctcc cattcacata taaaacatgt
      181 cttttaatga tgtactttta ggaaagtcta attaaaattc aatgcataaa agcgtgcaag
      241 ggctgataac ccacagaact cagcagaccc tagttaacat tctaatgcat cctccatttg
      301 gagagagaca gtaagacttt tccacctcgg tggcagacac taatgatact tgcaaatatg
      361 actaatgtct tcattggtga aaaattaatg caccacaata atttttctac ctggggttaa
      421 tgaatatgtc agatgctgaa aatgagttgt ttgaaagtaa attactataa tctatattta
      481 gaagactctg ctcttactat gatgtgtttg atgtcccctg cttatttttg tcatgaattt
      541 tgctgtccac ccagtgagac tacactgtgc tgacttttcc aaggggatgt tttcctaaaa
      601 tgccc
//
LOCUS       KCLJ01000932             533 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 104626cal ultra-conserved element locus
            uce-5860, sequence.
ACCESSION   KCLJ01000932
VERSION     KCLJ01000932.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 533)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 533)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..533
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="104626cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>533
                     /note="ultra-conserved element locus uce-5860"
BASE COUNT          183 a          101 c          104 g          145 t
ORIGIN      
        1 gcagcatttt cagaaatagt ataaatacac agtataaaaa ggcagtagac actctgaaac
       61 agatgcactg gccccctctt atagcaaata aacgacctgg gcactaagga agcacagact
      121 caagcatgcc actaatgaag catttgcaga gtcacaaaat gtcacagatg agccacgcag
      181 cagctgacct gataggtgga attagttggc aagtgctgca gtaactgagc gattgtgtaa
      241 tttcttatac tagccaactt agcctgatgt ctccttaatc gaatgagaag caatgttagc
      301 tcttcaggct gcaggtattt agacacattg taaagaggaa attagcagtc ttcagggaga
      361 ggaactataa ttacattttt cacctcagtg cccagaaagc acttgacatg attaagcaat
      421 tatttaatta actctgcatt tggtcaaaca aaaacttgaa tcctgtaata acatataggc
      481 tttacaagat taagttctca tttgagttat ttatgcttta actaagatta aag
//
LOCUS       KCLJ01000933             388 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 104734cal ultra-conserved element locus
            uce-5974, sequence.
ACCESSION   KCLJ01000933
VERSION     KCLJ01000933.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 388)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 388)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..388
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="104734cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>388
                     /note="ultra-conserved element locus uce-5974"
BASE COUNT          126 a           71 c           83 g          108 t
ORIGIN      
        1 atcatgatta ctatggacca gttacagatg caaacatcta aatatttact ttttccactg
       61 gtaaaatgta catggcacag attactgcag tgtgccatac cactttaatg atattatatg
      121 gaaaatgtaa acttatacag cattagttac tatagagtag ttttggccca gtggcaccag
      181 taggaaaaat gatgtccttg ttcagctcat catatgggca ccttaaatct aggtgaggac
      241 aaatggggag gtgatgtgca tgtacaggca gggaacttat tgcttgacac ggatcaacag
      301 agcacttagg aaaccagtgc agtgggaaat caatatgact cagggccagc tcttactttg
      361 tgctcttttg ccaatgccaa aaaaaaaa
//
LOCUS       KCLJ01000934             800 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 104841cal ultra-conserved element locus
            uce-6703, sequence.
ACCESSION   KCLJ01000934
VERSION     KCLJ01000934.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 800)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 800)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..800
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="104841cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>800
                     /note="ultra-conserved element locus uce-6703"
BASE COUNT          266 a          155 c          122 g          257 t
ORIGIN      
        1 caactttcct gcaaatgtaa cgaccacttg ttagtgacac tcgggagaag aatacacaag
       61 ataaaacccc acagcatgta acttttcagg taatgtttat taaatataat ctttgtttca
      121 aagcagtgca ctggaagaac atctaaatga cttcaaagct tcagtgataa tttttgtgtt
      181 gtattttaac tttatcacta tagctcgcta tagatttgct tcaaatatta aatagactct
      241 ggatatagta gttagctgaa ttgtttatgg gatcaaaatc aaactaaaca ttcagaaaat
      301 tttcagcaag agattccagt taatgaaagc accatttgtg atgtgctaaa acatgtatac
      361 acataggtat tgccccattt atcagacatg agagctaatt acctcatcca ctgctatatt
      421 tcttccatcc tctgcatttc aattcccaat attaacacat aggtggtcaa gctgaccatt
      481 gaatagccta catgagcatg aatgcattaa ataatttaat gttagaagag tttattaaac
      541 tgccacattc taatcagcat gcgtacctgc cttcattaat cttgcactgg tccatggtgt
      601 gtctccacag ccgccataga gtgtgctaat gttaatagga gctcttaaca aacaggatca
      661 gttaatcaag gaaaatttac tattagccac atgaccatgc atactgaaat ctaattacaa
      721 tcagatttaa cctcttcatt actgtattca tccaaatatt ttttgttatc acttgtgaca
      781 ctaaagtatt ccaaactgag
//
LOCUS       KCLJ01000935             798 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 104953cal ultra-conserved element locus
            uce-6528, sequence.
ACCESSION   KCLJ01000935
VERSION     KCLJ01000935.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 798)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 798)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..798
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="104953cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>798
                     /note="ultra-conserved element locus uce-6528"
BASE COUNT          231 a          158 c          172 g          237 t
ORIGIN      
        1 gtctcaaaag aattttcact acctccagat aattaaaaat taatgaaaaa cgagatatcc
       61 tttctcctcc ttagagacaa aattcatgcg gctggaactg caacttgaaa gatttgaaca
      121 gccctttgac agcattgctc tgtaggtaga tacggaagtc aaattgcaaa gtgggttttt
      181 agaaagcaaa cacaaaagaa catgtcggca agcttttctg tgttttcccc attttcagat
      241 aacagtggac tcaaattatt gtgatgtgtt gattgattac agccgttaag tttcttagta
      301 atcagtttca tcacttattc tcaattcacg cttgcacctt tgatttctct tccacaacag
      361 ggtgatgtgg gttgtcgttg actaatgaag aacagaattg gtttcggcgt gagacaaacg
      421 gaatgccgac accaatccca aaatgcatta atctttaata atccacatct gcatgtttat
      481 aaatgatata accaggagtt gctaatgtta atactccccc ttccaaacag aagccgacat
      541 aggagttggt gtttgcaaac tacatgagag gcacgtggcc gtgcgtggtg cgtgtgacct
      601 tgcggaggga gctcgccaga tgaaagttct cggttgatta aaaatacatg aagaattgct
      661 tcgcttccac accggtcttt ggagcttatc gttgtcgggc aagatgaaat atggcatgat
      721 agatcttgtc ttctagggag atcagaccca ccaaatgggt tttggaagca ggtttgcctc
      781 aaggtgcttt tatccttt
//
LOCUS       KCLJ01000936             475 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 105062cal ultra-conserved element locus
            uce-3200, sequence.
ACCESSION   KCLJ01000936
VERSION     KCLJ01000936.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 475)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 475)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..475
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="105062cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>475
                     /note="ultra-conserved element locus uce-3200"
BASE COUNT          143 a           85 c           96 g          151 t
ORIGIN      
        1 tttttcagtt tgttcttcta agtcttttaa aggtttcttg aaaagataat aatgatccat
       61 tttcatcaag agctttgaac tgaaggccct gagtatatag ttagagcatt aagggcagta
      121 tgggtagaac agccaatcag agtaatgagt ctccactgct tgagaaatcc agattaatct
      181 aaatcaaata ctttccacta tggcaatttt aactaattcc ctcatgaaag tataagagac
      241 atatgaaacc cctacagtca gcataaacct cctggtaggg ctagacaggt aatacctttt
      301 aagcttgtta atgtcttatc ctgctggttt ctacaactga ctcaaagaat agctgtgtac
      361 ttctcaacct gtcattacag aggaaagcaa ttttcagcac ggggatggaa agggtgatgc
      421 tgtgttttgt atatcatggt aatgctagta tggctggatc tctctggact gatgt
//
LOCUS       KCLJ01000937             687 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 105168cal ultra-conserved element locus
            uce-2222, sequence.
ACCESSION   KCLJ01000937
VERSION     KCLJ01000937.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 687)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 687)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..687
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="105168cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>687
                     /note="ultra-conserved element locus uce-2222"
BASE COUNT          230 a          142 c          131 g          184 t
ORIGIN      
        1 ggaaacacaa tagaaaaagg accaataatt cttactgggc ttctacaagg gaagaaaaat
       61 cagttgttgg cccgatagct gagtgccctt cactgtcaaa cccatctgaa catgctcttc
      121 acctttcagc ccctcttcat tacaaaactg tttaacagca aaggtaatgt gatgcaacac
      181 atattttaca catagataca cacatacaaa caattttttg tttttgtttt tttacctaaa
      241 tgcaaactgg atgaggatcc atgtgatgaa agtgatggcg gtggcgtaag tgaatgtcct
      301 ggcgtttggc ttggcagagg catgcctatt ggacttggag aggaggaaaa tcccagacta
      361 ttgtaaaatg gctgccctat gggtgctagg ctgctactag atcttttgta caagtcagag
      421 ctagtagata gagaatctct ccttgtggca ctactacttg cagaactgcc aactgaagaa
      481 gaaataaaaa gaccctaatt acacagtgtc aactgaataa aacctatccc aaactacagc
      541 tgggcaaaaa cagatgcgat cacaataatt acagcaatcg ttatgacaaa gacaatcact
      601 gtgataacca cacatgcttt ttaaatctaa gtgggtataa acatatcact ggcaaataat
      661 ttcaccaatg tccatttcaa catttca
//
LOCUS       KCLJ01000938             884 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 105282cal ultra-conserved element locus
            uce-2070, sequence.
ACCESSION   KCLJ01000938
VERSION     KCLJ01000938.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 884)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 884)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..884
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="105282cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>884
                     /note="ultra-conserved element locus uce-2070"
BASE COUNT          276 a          180 c          128 g          300 t
ORIGIN      
        1 taatttatgt tacaatattg ctgcagtagt atcagagaca aatgtttaat tcacagaaac
       61 tcagtttcaa actacagtcc ctgaatgcaa acagcagact tcaatttctt agttcataaa
      121 aatcaatttt tttacactgt acataaaaga ctgtggcatc aattagcctt aattcttttt
      181 tttttctttt ttggaaacct ctttgtagga aaatctcata tttcagcaat ttgcattatc
      241 cacacaatct gctttgaagt tctaagttat ggtaagaaaa ggatccactt atctgcacat
      301 aaaaaatgtt caaagcttat aaattccctg aaacagatgt acattatcat tggatttgcc
      361 tttctctctt tgctgttgca tggctaatag agtttcatgt gccccctcac atcctcccca
      421 tttagcatct tttctctaca gaagcatgca ccctactgtg ccaatccaca cttcaaagat
      481 ttctgtctat ctattagaaa caaagcacaa agtgagaaca tatggcccct tttaaatttc
      541 ccacatttaa gtcaatatcg tttcttttct cctttggcaa agaaacataa taaggtttat
      601 cttctccctt cctaaatctg ctggctctct caaactgctt gtgccaattc agcagttact
      661 ttgcagtatc agacttggca gcacatatga aaacaaaatc tctaattttt aaattgcttt
      721 tatttcttca gatcaagaag atgcatttaa atgatgaaaa tgtaactgca cactttcaga
      781 taagtggatt ttaaacccat gaaagggcac aacagaaagt caacagctgt tcgagtcctt
      841 ttcatggtga catctttcta aaggatggaa gagtattgtg gaat
//
LOCUS       KCLJ01000939             863 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 105389cal ultra-conserved element locus
            uce-290, sequence.
ACCESSION   KCLJ01000939
VERSION     KCLJ01000939.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 863)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 863)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..863
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="105389cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>863
                     /note="ultra-conserved element locus uce-290"
BASE COUNT          236 a          145 c          206 g          276 t
ORIGIN      
        1 ttaaagatta atttaataat ctcagctggg tgaagcagag agcagattag gcatggacaa
       61 accataccaa agctgcagag agtgaaggtg acagtccagg gatagccact gctgacttta
      121 ttctagtggg gacatgactg gtcttttgct ctgtttgatg catggagaag gtacatctta
      181 taagacatgg tgctccttta gtaaccattt aaatgaagat taaagttatg gagttggaga
      241 gtattttgct gttttataat ttagcaattc aggctgaagt ttcttttgtg gtttttgtac
      301 aggcagccta ggagatggac atttgacagg cgacaataga ctgctccttt cccaggtatc
      361 tcctgcttgt ttcctttatc tgtgaatagg aaatggctta aaggcacctg tgttatgaag
      421 gtcccagggg cagctgcctg actagtgaat gcctgattat gtgttaacat gctttgtcag
      481 atattggcag aatctgttct cttcttttgc cttttcagca agggtaccat tgacagactg
      541 gctacccatt tatagaaatg ttgtccatca aactgtgagg aaggacaatg gtgtttttct
      601 gtgaccagtg actgtgggaa acttttcttt ggctattcag gcaatttttg tagcttgctc
      661 tgaagaggag agactgatga gtgcaaaaag tacaattaag caaagccaga cttcaattga
      721 aggctgtagt gtagtctgct tgttctcaaa aaaaatctat gggttttcac gttgctgtgt
      781 ggcattcagc ggggggctat tacaatccta aatttttttt ctagaccacc taattctaag
      841 taaaaattaa atgtaatgag agc
//
LOCUS       KCLJ01000940             362 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 105502cal ultra-conserved element locus
            uce-6499, sequence.
ACCESSION   KCLJ01000940
VERSION     KCLJ01000940.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 362)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 362)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..362
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="105502cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>362
                     /note="ultra-conserved element locus uce-6499"
BASE COUNT          118 a           76 c           70 g           98 t
ORIGIN      
        1 ccacaataaa gtgattctgc tgtggagata gcaccaggtg catgggggtg acctcacaca
       61 cacaccaaat cgggagctga catccatcac actttgaaat tttggatttc atcatttcct
      121 gatctttcta aagggatcac agcacctggc cctcacagct gtagttcatt tagaaagcaa
      181 tttaaaaacc gagaaaaaag caaatgacat cttgctgcct cagccttgtc attaagtata
      241 gcagaatggc cttcatttat gagacacatg gctaagaatt aatatctttc agtgctttct
      301 caagttgaga ttacaaaagg tttgaaagac cactaaataa ttagtactat gactgaggca
      361 ag
//
LOCUS       KCLJ01000941             634 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 105611cal ultra-conserved element locus
            uce-2252, sequence.
ACCESSION   KCLJ01000941
VERSION     KCLJ01000941.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 634)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 634)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..634
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="105611cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>634
                     /note="ultra-conserved element locus uce-2252"
BASE COUNT          144 a          151 c          107 g          232 t
ORIGIN      
        1 ctttggtgcc tttttaacaa tattttctct tttccttctc ttcccatcac ctttttgctt
       61 ttatttcatg tgtttggttg tggctattcc ttacgttctc ctcctcatcc cacctctgcc
      121 tatccacatc caccatttca tttcacctat acatccttag catggcaagg cactgacctg
      181 atgcataatc acgtcttggc tgatgatgac caatcaagtc tagactcctt gggtcgtcgc
      241 agtagccttt ctcgtttgga gccttcagac ctctcagaag actctgacta tgacagtata
      301 tggacagccc atagttacag aatggggtct acatctcgta agagctgttg ctcatatatc
      361 tctcaccaga actaatgcac ttctgagctt tttcttaaca aatgcttgtt gtatcacagc
      421 ctgcttttct tagatgtttt cttgctgttc cttgtctctt taatgtgata ttttaacaac
      481 ttctgaggga gctcctgaaa cttcagttat acctggtgga aggctctatt gtcaattcag
      541 tacacgtaca aataagtcat tctaacatat cctgttaagg atgatacttc ttgagggttt
      601 tttaaactga cagatgttaa tttgtagctc tgaa
//
LOCUS       KCLJ01000942             481 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 105720cal ultra-conserved element locus
            uce-5761, sequence.
ACCESSION   KCLJ01000942
VERSION     KCLJ01000942.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 481)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 481)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..481
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="105720cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>481
                     /note="ultra-conserved element locus uce-5761"
BASE COUNT          164 a           94 c           80 g          143 t
ORIGIN      
        1 actttgagaa tgaaaaaatg gcaagtgatt ttacttaatt gttctttact ataactttca
       61 ccctatgaca ttaaacataa gctctttttg aaaatagtca ttaacctttt gcatgatgta
      121 taactagctt tatcactccg gttccacttt gagttctgaa aagaagatcc actgggagac
      181 gcacaaatgg taaaccacac cgaaggacac aaaaaggccc ttaaaacatc agtagggtta
      241 taaaggtcta tggattttaa ttgctgtgtg ccattgggcc tttacaaagc aatcaagcag
      301 gcaatctccg aagacaaccc tgccataata catttaacaa tagagttctc gccccatcag
      361 cagactaggg tttatgaagg tcccaattgc aattaatgac cttgtatatt ggacaaaatt
      421 acttaaatta actacccttt ttggatacat atctaagtat cagaaagtgt aatttcaaga
      481 c
//
LOCUS       KCLJ01000943             523 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 105829cal ultra-conserved element locus
            uce-4044, sequence.
ACCESSION   KCLJ01000943
VERSION     KCLJ01000943.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 523)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 523)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..523
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="105829cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>523
                     /note="ultra-conserved element locus uce-4044"
BASE COUNT          120 a          109 c          139 g          155 t
ORIGIN      
        1 ttttgctgcc gtatcacagg acacgaaaat ctcccatatc ccgtgccggt aacccagaag
       61 ccgcctattt tacatattgg gggcaggaga ggagataagg gcggtgagtt gagccgagtg
      121 ggaactgctg actgacaaag tgtgtagtgc agtatttctg gctctctaat tatccttttc
      181 cttcttgact ccagtatcac atgtagccat gtgtagaatc ataaaataat tatgcagtgt
      241 acaagctttc tgggagcatg taccactgtt ttcctaattc tttatcgctc ccattgatcg
      301 tggcgtgtgt gcattgatcc aagtcggcca tctggttggg gaagataagc gtgcgagtgt
      361 ctttgcattg cactgtcact cagggagggg ggtacatttt ggctgtaggg aattacaggg
      421 gcaggattag ccctcttcct aggagtaaac tgaattttaa atgcagtgtt gcagctgcat
      481 ggaccatgtt gctaacttct ggttttgccc atagactggg tgc
//
LOCUS       KCLJ01000944             654 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 105937cal ultra-conserved element locus
            uce-750, sequence.
ACCESSION   KCLJ01000944
VERSION     KCLJ01000944.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 654)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 654)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..654
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="105937cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>654
                     /note="ultra-conserved element locus uce-750"
BASE COUNT          214 a          101 c           97 g          242 t
ORIGIN      
        1 aagttgttcc tcattgatat tttgttgctt aaagtataat ggcgtaaaga taattatttc
       61 agttagtttt gtatctctgc ttttccagac actgatctca aattgccttt ttcatgccag
      121 acaatataat tttaatagta actgaagatt taagataaca ttattccttc agcatggttc
      181 ctatatacat gcatcttttg aatcaataca attaagcttg tctcctgttg gaattcttgt
      241 aattattttt cttgaaatac ttttcctgta atgatattga agttaaagta atcaggttac
      301 tggcagatca tgtaaaattc aactcaaaat tgctggctgc ttgattttaa tttgtctgac
      361 atcaagtttg tttgaaaagg gataatatgt ggttaaacca aggagcttat aattatggtt
      421 gacatttgtt tgtttataat gaaatctaat taaagttcat acattttaaa acaccaaagt
      481 taattactga attgctcact tcacttatgc acagcagtca aattaacttg cagaacaatg
      541 acaaaagact atgcataata acaaaatgcc cagctgatct tggcagtaca aaacaaattt
      601 gccatggtaa tattctagaa gtgctttatt aataaccatc ctgtattttc actg
//
LOCUS       KCLJ01000945             456 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 106045cal ultra-conserved element locus
            uce-1058, sequence.
ACCESSION   KCLJ01000945
VERSION     KCLJ01000945.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 456)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 456)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..456
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="106045cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>456
                     /note="ultra-conserved element locus uce-1058"
BASE COUNT          143 a           84 c           83 g          146 t
ORIGIN      
        1 cccagagcct aattttatgt gcctgggagt agctatctga gcttcaggca atacaaacgc
       61 tgctattact ggggagtaaa agctctgcat aattaacaaa catcatcagc cttacagttc
      121 ctgtagaatg tagcaagttc cttgcctgaa ggctgctctc agcctagtaa gtctgtttac
      181 cctgtccaag attagattag tttaattatt atgaaaaaga ctgctaagat cttacagcct
      241 aattatgcaa atgtttctaa atgttcacaa aagtaattta tttatttgga gataaatgaa
      301 tctgttttgt cataaaccag attgcagtcc tggcaatgta caagcagggt tatgtgccct
      361 taggcatatc cttcaccaga aatatcagtg ggacccctgg attacaacat ttataaatac
      421 ataaatgttt tttagcaggt tttataaatt atagta
//
LOCUS       KCLJ01000946             619 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 106154cal ultra-conserved element locus
            uce-1582, sequence.
ACCESSION   KCLJ01000946
VERSION     KCLJ01000946.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 619)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 619)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..619
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="106154cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>619
                     /note="ultra-conserved element locus uce-1582"
BASE COUNT          204 a          117 c          105 g          193 t
ORIGIN      
        1 aaggagtcac tgaaaaatgg agtgttgatg tacatttgac ttcaaagaat gcacggattt
       61 acatgatgca aatattatcc ctataaatac ttgaatataa ataagcagaa atcaacagca
      121 ataccctcat taaaaatcaa accccaatat tttatattaa tgctgttgag ctgcccataa
      181 aaattatttt aatctgcaaa ctgtggcaat tctataaaac tacaagtttt gctcctgagg
      241 gttccttttt ttaacacctc tctctaatct gcccagcctg ctgagtagca ttgacatcag
      301 tagtacatca atttcagaaa gtggattatt tttactagac agctattgtg acatattggg
      361 tcagtcataa atgaaagata ttcatgcaag catgcaatac ttgtaatgaa gtctcactct
      421 gaccttctgt atgattgatt ctgtaattta gttttctcag gcagtgcctg aaatgaaatg
      481 aaatcatgtt gaacaagttt tgaataccca cagtgcacca ggagaagaaa aatctgcagc
      541 cccagaggct tgagagagag cagctgaacg atttatctcc atgctattat agcctttgcc
      601 agcattcaac atttctttt
//
LOCUS       KCLJ01000947             848 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 106265cal ultra-conserved element locus
            uce-550, sequence.
ACCESSION   KCLJ01000947
VERSION     KCLJ01000947.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 848)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 848)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..848
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="106265cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>848
                     /note="ultra-conserved element locus uce-550"
BASE COUNT          266 a          105 c          195 g          282 t
ORIGIN      
        1 attattggga attagtttaa attgtatgaa aatgatgctt ctgtaagcaa tagagagaga
       61 agctaataca tttatttatg ttaaaacgtg tattttgttt cagagaaaca aacagctatt
      121 aaacactaaa tcctacaatt cagggtgggt ggggaattaa gtaggctgtg gaatgctgct
      181 ctgacgtgca gtgttgtgag tttacattat agtggcagta tccaatcatt tttaattctt
      241 ttaattactg aactctcttg agtacataat ggtgtggaat atacacatgt atctgtaata
      301 aacaacatgt atcttgaaga aatggattta gttttggcaa caacgtgata gggagatcaa
      361 agagcttgct ggcattaaaa tgatttagat acatttgtca taggcagctg ttatgctaat
      421 ctcatttatg cagttgtcag ctgataggtt ctgatgagcc agcttagtgg gaaaatcatt
      481 agtagatccc tattgtgata aatgttattt attactgtca aatggtatta atgtttgatt
      541 caaagatggg aaatgggcat catctacatg aagttcatcc attcatggtc aatgatgaca
      601 aagggagctg ttgaattcca gccaaaggaa cttcatttct gtaagaaaaa agaataatgg
      661 atttaatttg catatgtttt aaaagggtaa tgaagtaata tgatgtttat cttggttgaa
      721 gagtggtaat ttttgctggc atggctccag caacatttga gtcattgtgc agcatttgct
      781 gttcagttgt tggttgtgga aggggctttt caaagcagca ggtgcataag gggggaggaa
      841 ctaaaatg
//
LOCUS       KCLJ01000948             605 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 106375cal ultra-conserved element locus
            uce-6719, sequence.
ACCESSION   KCLJ01000948
VERSION     KCLJ01000948.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 605)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 605)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..605
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="106375cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>605
                     /note="ultra-conserved element locus uce-6719"
BASE COUNT          172 a          109 c          147 g          177 t
ORIGIN      
        1 agtaacattg ctggtattct ctgcaggtag ctctgaggat gtgaggctgc cctccctggt
       61 gacctcataa tttccagaag caggtggaga tggcaattat agctatggcc actatcttga
      121 accttctgta gtaggtgatg aattgtaaat ggctagaccc agtgcacaac aataaactca
      181 aataaatctt caatgtgtaa taatgacaag actgaaagac tggcagttat aacaaggctg
      241 ctgttgtcac ccactttact gtagccttga tatccatcat tatcagctgg agctagctca
      301 agagtcggac aagaaggtct gaagaaggat gagttgtttg cgctgaagcg tccagtaggt
      361 cccatctggc agagagtaaa tgggattttt ttgcctgttc actggaccag agctgtccat
      421 catattgggc agatatctga tcacttcatg ctgtgggaca atatggcttt gtgctgtttg
      481 gtacagcaat ggcaattaaa ataactaagt ttttcattta tttcaagctt ttgttttagt
      541 tagccaaagg tgatcgtagg aagggatatt tacattagaa gagcgattca ggaagtcaag
      601 tgaga
//
LOCUS       KCLJ01000949             817 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 106486cal ultra-conserved element locus
            uce-371, sequence.
ACCESSION   KCLJ01000949
VERSION     KCLJ01000949.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 817)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 817)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..817
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="106486cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>817
                     /note="ultra-conserved element locus uce-371"
BASE COUNT          246 a          185 c          144 g          242 t
ORIGIN      
        1 ttcctgcgca tcacttagaa atgcagagac gactactatg aaccctggca tctttgaact
       61 gctttcagga aggatgtggt gtacatatta aataagcatc atgagtagga aaattaaagc
      121 aattgaaatg aaattaaatt tctggatttg gaatgatcca cttctttcaa gataaaaatt
      181 tagctgctgc cttttcagcg tgtgctgcat gttctgtcta agattaatcc cacaggaggt
      241 ttttttattt cctactctgc ctatctttca tcttcacccc agactaagca gatggatgtg
      301 aattcaaagt tttctgatct ttagcacaag ttatggaggg ttatctttgg ctgtatatct
      361 ttctgctggc agcactccct tggtgatgaa ggattaacca ccacagctgt ctcttcccag
      421 aatgatgcag tgcagcgctc ctcaacacga cagcatcact taatcttaat gtccgctctt
      481 ccagcgcagc cgcgcaggac aaagccaatc aacatcagat gccaccaaga tggacctact
      541 gcttggccct ggagtctttc accctcacac acctattaat caacatcatc cagaccaatc
      601 ccagtgttca cttctttcaa accacagtta aactaagctg ggttttatat taacagaccg
      661 agagatatag aaatctaccc gcagataaag cgtgcatagg cagaactgta gagcaaattc
      721 caatcaagtt ttaaactcct tatttacaaa acaaaggtgt ttattttgtt ttaaagcata
      781 gctaccaaaa tttctaatat tgaaattcac taataag
//
LOCUS       KCLJ01000950             581 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 106572cal ultra-conserved element locus
            uce-3368, sequence.
ACCESSION   KCLJ01000950
VERSION     KCLJ01000950.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 581)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 581)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..581
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="106572cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>581
                     /note="ultra-conserved element locus uce-3368"
BASE COUNT          184 a          112 c           95 g          190 t
ORIGIN      
        1 tcactaaaag taactgtctc actgcacatg atgctatttc cacttgcaat tagcttttat
       61 tgtacaatgc tgccaggtgt ttagaagggc ttctctagac actcagccat taaaacaacc
      121 tctgactatc aaagaggctg cttaatttat ttttgagatt ttaaaatatt cctattccat
      181 gacgggcatc ctttcaataa ctgaatttaa taaagatgta ccttatcagg ctgtgcagat
      241 aacatgaagt cctactacta atgctgtaca atattcttca aacagattag caggatgtgt
      301 gcttcagcaa atttattctg tctatctcca ctgaatcagc tgtctgctaa tgcttgtaca
      361 actcgtacac caatagtgtt atcataaaca caatttaata gaggtgactt agtgaggcta
      421 aatataatat tccaaaatga attgaaggct aaggtattgt ccgccatctc tgaaaaataa
      481 ttactacatt ttggaatcca ccaggacagt ctgtggttgt caaaatagat gtctatttga
      541 tggatatgtt tttatagttc ctgctaccaa cagcaacaat a
//
LOCUS       KCLJ01000951             665 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 106683cal ultra-conserved element locus
            uce-7125, sequence.
ACCESSION   KCLJ01000951
VERSION     KCLJ01000951.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 665)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 665)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..665
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="106683cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>665
                     /note="ultra-conserved element locus uce-7125"
BASE COUNT          182 a          119 c          114 g          250 t
ORIGIN      
        1 ggtgatactc aatgcgtggt tgtttactca aagttgcaag catcaccttt gatttcaagg
       61 gtgaggatgc cctaagagtt tgttccagaa ccagttggtt acaagtgcac ctcttatata
      121 tgccttacaa acttcagagg ccatattcaa aacagggttt tatcagtgta tgcaaggggg
      181 tgcaacccct cttctcttcc tccccaggtc aaacagtatg gacagttttc acacatatct
      241 acctgtataa ccctctgtac ctctcataac tggtcaatga ctgtaacagg ttacatcagg
      301 tgttttttct acatactttt tacacaaatt ctatgcgatt aatgtaactt aattcaatgc
      361 atcattttat tgtactagtt cttaagcttg tctttatttt tttttctagg tgactgtggt
      421 ttcttgtgat ttttattgta taaataaatg aggtggctgt tgatgcttac tctctgttac
      481 taagaatttt tacctttttg gaagaaagca ttgctatgaa ctaatgaatt taaaatgtca
      541 tttactcatt gtaaatacag tattgtgcga cccttttcat tcatttgaat tgctagtgtt
      601 aactgaattt tgtctagaca ccatttctgt tgatgaaata aagacatatc attatgtatt
      661 gtaaa
//
LOCUS       KCLJ01000952             358 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 106788cal ultra-conserved element locus
            uce-4401, sequence.
ACCESSION   KCLJ01000952
VERSION     KCLJ01000952.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 358)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 358)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..358
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="106788cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>358
                     /note="ultra-conserved element locus uce-4401"
BASE COUNT          134 a           86 c           50 g           88 t
ORIGIN      
        1 tttctgcagc cccaacagca cttttcacag tcaggattat tctccacatt gttgtctgca
       61 gtcaaagtca ctcaaaaatt cctatggtcc cagcagcact aaaaatacat aacagcctcc
      121 ttacaataat ggctgtgaat cacagcattc ctcagctgac ataagtagtt aaaatagttt
      181 aaaaaaaagt taaaataaaa ctttttaaaa gttcaagtga aaaatgaaaa aaggttgaaa
      241 aggactcccc taccgtctaa caatattaaa gtctgcctca aatttacaaa cgtactcagc
      301 aacatcaaac gcaccggctt caaacacacg cggcagcttc aaacctgaca gcttcaaa
//
LOCUS       KCLJ01000953             497 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 106891cal ultra-conserved element locus
            uce-738, sequence.
ACCESSION   KCLJ01000953
VERSION     KCLJ01000953.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 497)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 497)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..497
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="106891cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>497
                     /note="ultra-conserved element locus uce-738"
BASE COUNT          138 a          118 c          111 g          130 t
ORIGIN      
        1 tgcaaggaaa acacttccca ctctactaac agctatggca catacttcat ttctaatctc
       61 tggaacttat tggttgctaa atcatgtaga agtatagaca aaacccctag cactgctgct
      121 cttttagtgc ctgtgacctt gaagccgtga tgagccaggg agatgctgca aaatgtacag
      181 gctccaccag atgagggact ttgatgctgg ggggagctct ggggtcaagc gcagaaaggg
      241 gaaataaatg gtaaaatcac tgtctctaga ctcctcagat aaaatggaaa caagcacttg
      301 gcattttcag tgctgacaac ctggcttgtt tgttcactct aatgagcact ctggctccat
      361 taatgagcag actgaatcca ttatcatcat catttcaaaa ggcagcgtgc cactaaatag
      421 cttcccatat tagcaggcat tgcccttgtt gttccatttg atcagcagtg gcagcaggga
      481 gcccgctgta ctcccac
//
LOCUS       KCLJ01000954             700 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 107095cal ultra-conserved element locus
            uce-7629, sequence.
ACCESSION   KCLJ01000954
VERSION     KCLJ01000954.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 700)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 700)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..700
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="107095cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>700
                     /note="ultra-conserved element locus uce-7629"
BASE COUNT          229 a          112 c          124 g          235 t
ORIGIN      
        1 ctcctctgaa ccagttttta tagtgtgcat ccttaactga caataagtaa ttggaaaaga
       61 atttttgtat ttgtgagact tgaccttgac attgtttgtg taggcctcca aagcaattat
      121 tgtagaaact gagatggaaa acaaaaggca gacagaaatg cttgaattag tgcaaatcac
      181 aaacatagct gaatggtatt agatgacagt ctgcttttaa tgagggaaga catgaagtaa
      241 ttaaatcttg acatacaatt atgaaaaata tcaggtaaca agcctgctat gcaatataaa
      301 ataagagaag acattttctg aaaacttgcc tgatgctctg tcatctgaga ctgttcttta
      361 tgagtgcagg gtgaaggtca aggaggtatc tcaactccat caatcctttg gacagttaca
      421 aatgaccttt cacttttcat aagacattca atattctgaa tgggggggat acatttttct
      481 gtgtttagaa aatagcaaaa ttgaaacctt ttatagcgca caaggtgcat ttgtgtttgc
      541 atctcctgaa cagctcatcc atttttaaat gttcgttgac accaatatct catttccatg
      601 aagtaaattt taaaatgctg tctctgtttc aacatgtatt ttgacttttc atacttttat
      661 tacattaatt ttaaaagaat gtctttaaat gctatagttc
//
LOCUS       KCLJ01000955             675 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 107207cal ultra-conserved element locus
            uce-6071, sequence.
ACCESSION   KCLJ01000955
VERSION     KCLJ01000955.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 675)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 675)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..675
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="107207cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>675
                     /note="ultra-conserved element locus uce-6071"
BASE COUNT          190 a          173 c          171 g          141 t
ORIGIN      
        1 tcacctagaa ctactgcaaa gtgtgagaac atcactctgg tttcagttcc aagataactt
       61 aatgttcttt aaggctggaa gagaacatag tttcattaca actgcacata tttttgtatg
      121 aaatgagcat ctcaaggcaa gggaaagaaa gcagcattgt tccagggctg tttttcacag
      181 gcctgtattc atatctcatc cttgttgttt gcaggagagg cagatgtgaa ccagaacaat
      241 gggacctcca cgaagagccc agcggtgaca gactccaaag gcacagcaga cccgaagaat
      301 gcctggcctg aggccaaccc agctgacagg actggtcgcc cccacttgat ccgcctcttt
      361 tcccgagatg ccccaggaag agaagacaac accttcaaag atcggccctc agagtcagac
      421 gagctacaga ccatccaaga ggacagtgca gcagcttcag agaattcgga tttgatggct
      481 tcacaaaaac gctcctcttt ccggcacgga tcaaaactgg catctgcgag cactatagac
      541 catgccagac atggatcccc acggcacaga gactcgggtc tacttgactc gctgggcaga
      601 ttctttggag gtgaaaggca cgttccccgg cggggctcgg gcaaggtgag ctctgaggaa
      661 tagagaactg caagg
//
LOCUS       KCLJ01000956             616 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 107318cal ultra-conserved element locus
            uce-3068, sequence.
ACCESSION   KCLJ01000956
VERSION     KCLJ01000956.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 616)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 616)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..616
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="107318cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>616
                     /note="ultra-conserved element locus uce-3068"
BASE COUNT          190 a           94 c           97 g          235 t
ORIGIN      
        1 agttaatttg tagatattaa ttgaatacta ttttaagtta ttctcatcca gtatcagaca
       61 gttgattttg atatggaatg tcccttttat agacttggca aagaccatca gtttatggcc
      121 tgtttcgttt cttgccagta gacagcactg aaagttataa aactaaaaca attgctttca
      181 tttatatctt ttcctgatta ctctgatagc tgaaatgtct gaagaagttc agaatctgta
      241 aagcctgtca cattatagaa acatgtctct ttaaactaaa tgtgaaattc cagtaattga
      301 agtgataaat ctactgtttt tgctggggta cttttgatga gaactatagt agtaaattag
      361 aaattattct ctgctgttat atcatggtaa aagcctttcc attatctgtt gtcagtcact
      421 aggtaagggc aaataactca gttgtcaatc taacagtgga accttaagtt ctgggaataa
      481 tcaataaggc aaaaactctc tattatctta atgtaattct ttagacaact tggagttgtt
      541 ttttcccttt ttatttctgc acatctcatt tattcacaga tatattggat atcttagaat
      601 atttcatttt ttatag
//
LOCUS       KCLJ01000957             680 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 107426cal ultra-conserved element locus
            uce-4891, sequence.
ACCESSION   KCLJ01000957
VERSION     KCLJ01000957.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 680)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 680)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..680
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="107426cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>680
                     /note="ultra-conserved element locus uce-4891"
BASE COUNT          258 a          111 c          108 g          203 t
ORIGIN      
        1 aataaaattt actgttctaa ccaaagatat tttatataaa ttaagagttt gtttaaaaaa
       61 aatcgaaaat gggaactcaa ttctagacaa cacttaattt aaactaagtg ttaaaataaa
      121 agcaataaca ctgagaataa attaatgaac tacaattaac tatatttaca ataagtggtt
      181 tggttagaaa cacctattcc ctgcactgat aaaataaaac ctgcattctg caaaagctga
      241 aataagttaa atgaagatgc ttttaacaag gttattactt aagcagtgac aggtttacag
      301 attttagcac cattgggttt tcacaggagc tgcagcaagt gctaaaataa cacacacctt
      361 caggttcatt aaattcacca gtgtgatgaa ataacttttt ctatattact atagtgcctc
      421 aaagaactgc ctataaataa gatacactaa taacaactgt ttgcagtgct aaaacaataa
      481 aataattctt ccaggcttat atgcaaagga agaaaaggca gactgttagc agagttatat
      541 ctggtggctt taattctact ggtgccatgc cttcagccat ttacttatca tagaaatgcc
      601 ctataaaatg ttttatcact cattgtggca ggaagaaatt tgtttaaggg ctacataaag
      661 aggggactcc cgtcccgaaa
//
LOCUS       KCLJ01000958             893 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 107539cal ultra-conserved element locus
            uce-415, sequence.
ACCESSION   KCLJ01000958
VERSION     KCLJ01000958.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 893)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 893)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..893
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="107539cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>893
                     /note="ultra-conserved element locus uce-415"
BASE COUNT          330 a          153 c          131 g          279 t
ORIGIN      
        1 atattcaact tataatgtca cataccttga aaaacaaaac aaacatttgc tatacaaaaa
       61 gtcaacaata aattttttga aaatcatata tgtaaaaaaa atctcttaat ttgaaatagt
      121 gattacagca cctacagctt actgtgtttt tgttaatgcc atgcgacaat ctaagaaaat
      181 aaaccacagt ttttgtttat caatgtaaaa aattactgat ctcaacttgt tagtttacaa
      241 attgtagata attgtaaatt agggtaagca aagcatgcaa atctatagat tctatatctg
      301 aattcctaga ttagcattaa aaccaatcac cgcaacaaat acctcaacag tatgccttgt
      361 gtgcagaaag gaagcgatac tgaacattca atgccacaac tgtaaggttt tcggagaagc
      421 acctgtggca gtttcagcag tttctatatg gaatgctccc cctttctagg attacttgaa
      481 aaaatcaagt caattcgaat tacgtagctg taaaacattg acatgtgtag tttttacagt
      541 ttcagaatct tctgtttgat ttaaacgggc aatggtgcat aaacaggaaa cttatatcat
      601 aagggatcac atatttgcag gcaacattaa gatttacatt aacatacata aagtgctgta
      661 gcacattatt caatatgtaa gccattatca tgtgaccacc ttaacaacaa gatactaagc
      721 cttttaagcc tttaaaagca aactttcatc ctgaaaccaa tttttcagtt ctccactgaa
      781 atttatatag aatggattaa agttaccggt caactcatgg cttcaattac tttaaattta
      841 gtaggctgta tctcaaaaga attagtagct aaaaattagc agatacaagg att
//
LOCUS       KCLJ01000959             651 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 107648cal ultra-conserved element locus
            uce-3211, sequence.
ACCESSION   KCLJ01000959
VERSION     KCLJ01000959.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 651)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 651)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..651
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="107648cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>651
                     /note="ultra-conserved element locus uce-3211"
BASE COUNT          200 a          120 c          127 g          204 t
ORIGIN      
        1 gaagaaaagt tgtagtactt gttccttcca ttccaagaca tgctaagcaa gtcacttgcc
       61 cttctttatt cagagtggaa atactttgat ccagttttct gaagacaata ctcatttcat
      121 aagaatattt aatcagtaga aaatagagag gatttagttt gtttgtttag tatttaacca
      181 agtgaataag gcagattagg ggaaactgga cccataaaca aggtgatata taatattttt
      241 tttcgttctc cttttaaata aataccgatc agctttatgt tcagagacaa taggagccgt
      301 tggcttaaat ttgcagttta ctgtatttat ggctgtaata tcaaggtgct gccgtcgtaa
      361 tttcatgccc caatgagaag agcaaggtcg aagcaaatgc ttccatcggc atctgctaac
      421 acactaactc ataaacaagg cccggctgga tcaggtggca cggaataata caggctaatg
      481 aaatacagca cagctttcca ttactgttag tttttacagt gtcgtcatta cgtgtaattt
      541 atgtttaaaa aattcaattt tatacaaggc tctgggaaat aggggtctgc aggtcacccg
      601 acgactttta acggctctga gagtccttat tgcactctac tgttccaaca a
//
LOCUS       KCLJ01000960             714 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 107758cal ultra-conserved element locus
            uce-4327, sequence.
ACCESSION   KCLJ01000960
VERSION     KCLJ01000960.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 714)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 714)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..714
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="107758cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>714
                     /note="ultra-conserved element locus uce-4327"
BASE COUNT          229 a          167 c          128 g          190 t
ORIGIN      
        1 catttaaaga ggcaaacaca tcgtatattt cccattaatc atcttgcaaa agctaaataa
       61 aacattaatt agaattttat ctgtgtaggt acgtagcaac tactgacact gatgtgagga
      121 actgaacaga agacagagaa ttcagttaat catctcctta cgttgccatt ggcacataaa
      181 tttgtctcat tagcaggggc tacttagttc gctgtagtaa acaaagctgc cgatcctcgc
      241 acactttttt cctttcctta gacttctagc atgtgccata gaagagccga aacattcctg
      301 gagtgtcaca atatgtaata caataaaaca gattacaacc atacctttct ttcacagcag
      361 tggtgccaag cacaggtaca ctgtagcaat caatttgttc tgcagacagt aaggctttca
      421 tagaatacta atgcaaaatc tcttttcttt ctccttcgac ttgactcccc aatgcctggg
      481 tcccgaccaa tacaaggagg agggcagaat gtcttctgct gagataacca caactactaa
      541 tcaagtatac gtgtacaagg gcacaggatt aaacctccac cgggcttgac tcgggcaccg
      601 agagcagctc aacacatgca cagcaaggtc agaattaaac acacacacac accagtgaac
      661 taatttatac actttaccat ttttacctcg gggagtaaaa ttacatcctg gtga
//
LOCUS       KCLJ01000961             203 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 107869cal ultra-conserved element locus
            uce-2932, sequence.
ACCESSION   KCLJ01000961
VERSION     KCLJ01000961.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 203)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 203)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..203
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="107869cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>203
                     /note="ultra-conserved element locus uce-2932"
BASE COUNT           75 a           31 c           33 g           64 t
ORIGIN      
        1 accagacctg catttttgtc tttaaaaaaa ggactatgaa tgaccaaaga ctaacattta
       61 taattttatg tagaaacaag ccatgttttg catttggata gatttaaatg aattaaagct
      121 aaaaattaaa aagcacgatg ctgcaacatc tggtcacttg ttgaagacct cacttttaaa
      181 gtggttaagg cacaatttgt act
//
LOCUS       KCLJ01000962             433 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 107976cal ultra-conserved element locus
            uce-1867, sequence.
ACCESSION   KCLJ01000962
VERSION     KCLJ01000962.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 433)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 433)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..433
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="107976cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>433
                     /note="ultra-conserved element locus uce-1867"
BASE COUNT          117 a           82 c           84 g          150 t
ORIGIN      
        1 tttactcaat tttttgcaca gtatattttg caaatttgag tcatgcacag gcagacaccg
       61 agggtatatg tctgtattta ttggtatctg ccgcagtcaa aacgccccaa aagactgtag
      121 aatttcgaaa actaaggttg tgggtcactc agttgtgatc tcagttgtat ttagtgccat
      181 gtgactgaag atactttgtt agcatgtgaa tgatggaatg cagaacatct acacaccctt
      241 atttcagtaa tggagaaagt tcattggctt aattcttctg tacttcgtag ccatagctcc
      301 actgtgtgtt cagtatgtct ggtctctttt cactataact aacagaagca ccatacaaaa
      361 gtcttacaat ggatgtctta atctctctgt gtgcttttag agcattattt tgaattccat
      421 catgcaggct ttt
//
LOCUS       KCLJ01000963             706 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 108083cal ultra-conserved element locus
            uce-2903, sequence.
ACCESSION   KCLJ01000963
VERSION     KCLJ01000963.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 706)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 706)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..706
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="108083cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>706
                     /note="ultra-conserved element locus uce-2903"
BASE COUNT          206 a          133 c          144 g          223 t
ORIGIN      
        1 ggattaaact gtcacatgga aggaaactga ttgagaaagg ctacgtatct cttctaaaat
       61 cacctatgca gtgcaggtgc agcagttgtc tgcaaacagc cagttgtctt gcagacaata
      121 gtctcactgt gtgacatgcc ctaaattttg aatcttctta ttttcagact gcaatgtcag
      181 acttcctagg tgacttcttc ccccttcccc ctcctttaat ctaggaaaag tgtttctgac
      241 ttataattat taaagagggt ggtaaaactg cacatattga agaacagatt ctgtagtagt
      301 agtagtagct ggcagaaatg ttaagtgctt ttcacagtca acattcaaac agattatcag
      361 atggcatatt tcaccctgtt gttactttaa atgaagtgac catgaaatca acaaatctgc
      421 tgtcaggtgc ctgtcacgga gatagttctc cctgtcacac aatgcctcac ataacaggta
      481 atgtgttttt aagaatcagt cctgtgtcac ctcatcaagt ccttgttaaa agatgaaata
      541 agacggatgg tgttgtctcc catggagctg actgaaattc agtaaaagca atgcatgtgt
      601 agaataggct gtaagatgcc ttttttcttg tgaatttttt cctgcttggt ttctagaccg
      661 aatgggttat gtttaaattt tgtgataagg acagaaagag ttaatc
//
LOCUS       KCLJ01000964             866 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 108191cal ultra-conserved element locus
            uce-1613, sequence.
ACCESSION   KCLJ01000964
VERSION     KCLJ01000964.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 866)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 866)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..866
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="108191cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>866
                     /note="ultra-conserved element locus uce-1613"
BASE COUNT          304 a          152 c          177 g          233 t
ORIGIN      
        1 gtctgacagc ggggtttgga ggagtagagg caaacctgga gcaaggcaag ggaaggaacg
       61 cgcacgggat gtgtggaaag aggaaacaaa gagacagcga cgaggtgaaa tcctttgata
      121 tttcctcagc ttaaagaggt aattcaatgc attaaaatgg atccttgaaa tttcaaagga
      181 tgaaactcgc acaacaaaga ttgtcgagag tgctattttc taggattaga acaaaaacgt
      241 attgggattt gctatatgat cttacatcgc ccagcaagac tgtacacttg ctgttatgca
      301 agcaccatct tccaatagag aattttcata attataacag aaaggcgtaa attttctaat
      361 gcatggcagt tcaaaaagta atcaagagaa tgagcctgag ggctatttta atgtatgcaa
      421 agctagtgac ccacagtaaa tgggaggtag gcttcaatga atgcaaagta atgcacacat
      481 actaaagacc tggtctgatg agggacggct aaaattaaca cccaattaat ttccgaattg
      541 acaaacaaat gaaagccata aatctacttt ctcattaatt ttcttgtggt ataatttaaa
      601 gcagtaatat gagggcaaaa actgagcatt atccatcata aatatcaaaa aagatagcac
      661 tgtaacacca taaattatgc atattacctg ttgttaaaaa tgattaatgt attatcaact
      721 ttatcgtgca ctgtatatgt ctagacatat ctaaaatctg aaatttcatt tagtgcttag
      781 gaaataaagg gtccagaaga aatgggatta ccctcagcat atccttggct ctgcctcctg
      841 atactctcac ctcggctgga ctcatc
//
LOCUS       KCLJ01000965             503 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 108302cal ultra-conserved element locus
            uce-6412, sequence.
ACCESSION   KCLJ01000965
VERSION     KCLJ01000965.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 503)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 503)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..503
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="108302cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>503
                     /note="ultra-conserved element locus uce-6412"
BASE COUNT          169 a           98 c           78 g          158 t
ORIGIN      
        1 attattattc agatttttcc ctcaaagtga tcacatttgg atgattagac cacatttggc
       61 caacactcta ccagatagaa gagccttcct cctttgtata ttcagaacaa gtttcatgag
      121 aagtatctca gaaacatctg ccttcattat aattatattt ctatttcagc tgcaccaagc
      181 tatttacaga tgagcctgtt cataaagagc tttataatta agcaaacaga aatatctttt
      241 tataggatgc agatctaggg gtgataatca cacacaaaat acacagcaac agttgcaaat
      301 agagtgttta atgctagtta tatagttagt gatgtgctca ataaagcctg acatgtcttt
      361 gttcctaaat gtaagaaaat acggtcttta ctacacaact gtgtaaactg cctttttcat
      421 aaaaaggcca tacatttcaa ggggtatggc ttgaaaacct ccatgaaaac aagccctcat
      481 gtctccaatg caatataatt ctc
//
LOCUS       KCLJ01000966             642 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 108412cal ultra-conserved element locus
            uce-7425, sequence.
ACCESSION   KCLJ01000966
VERSION     KCLJ01000966.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 642)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 642)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..642
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="108412cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>642
                     /note="ultra-conserved element locus uce-7425"
BASE COUNT          197 a          129 c          113 g          203 t
ORIGIN      
        1 ccaggcttat atttagctgt ggaagtacct acagttaaaa ggggaatttg attgtttagt
       61 cctctctgga tgagatgtat ggaaaacagt ccattaaaat attggttgtt gcaggcagac
      121 tgctatagat ttgcttttgc aaagcaactt ttcttccata aaatcattct cttttcttaa
      181 gctacagaag cagcataaag gttgaaattt tccattatga ttgttacctg ggaagtagca
      241 ctggttctag actctgggct gccactgatg tctaaatttt cttacagtgt acacacgaat
      301 acctgaaaca cacacgcgca cagtcaatta ctagatcact ttggtaacac gtatttcaac
      361 agctgcacgt atcctacctt tgcagtggcc ctggctcgga attcggggca gccattaaca
      421 gttatggttt catgcatgta ttgatacacc taaaatgttc atgaaaataa aatgaaatta
      481 attataggag caaaactatt ttaacctccc tttccctcaa agaactaaaa tccattaatg
      541 ctgtcaatca catagtaaag tgtacttgag caggcttagg ttaacagaga acatcaatct
      601 gtgtttctca caatcatttt caaacttaac tttacatctt cc
//
LOCUS       KCLJ01000967             885 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 108523cal ultra-conserved element locus
            uce-711, sequence.
ACCESSION   KCLJ01000967
VERSION     KCLJ01000967.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 885)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 885)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..885
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="108523cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>885
                     /note="ultra-conserved element locus uce-711"
BASE COUNT          289 a          140 c          198 g          258 t
ORIGIN      
        1 taggtgttat aaaccaactg gtgggtgctt gtgtgcatgt gaaatttgct tacacgaata
       61 atcccattga tttaaatgag agcattcaag tgacgaaaac aggttcaacg tgagaatgtt
      121 cagaagacgg tgaccttaga agcgaacagt cgtctttgga agcattcaaa gggggttatt
      181 aaaacttaaa gctgggagtt ggcgtttgaa ggcagaagca gctcgagagg tgttggggga
      241 gctcacctgc cagataataa tgctaatgat gctggttaac tctgcatcaa ctttctcata
      301 cttatggggg aagggatgag ggcgagagag ggacggtgac agcaaggctg tttgtttttc
      361 tcgaaagttg tttgtgattt caggtactca tgggaaatct cttgatcaga ttcacatctg
      421 ttcctgtcaa agtgggtgct aagataccgg tcacccagca accatgtcca agagggaatt
      481 gggccgataa taacttcaaa aaggaatgac agatgctaga ttaggatgaa agacaaaacg
      541 catgaaaaat gagcttgtta gaataaaaaa attgttcaag caccttcatg caaattaaat
      601 gaatattgaa catttgcatg cagtaatttc tactttttct gttgattgag aagaaataaa
      661 gatggtacat ataaaaacat aaatgtaatt ttttttttgc accaattaac atacaaagca
      721 gtatctttct tctaaaaatg agattagcca cctgggtgct tggctgtatc ccacatatgt
      781 cacaacattt ttgtaatgtg tatgcttctg ttgaagaaac accttatcta attctttgta
      841 gcaaaacaaa caaggaagaa gccttatatt aattttaaaa tactt
//
LOCUS       KCLJ01000968             390 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 108634cal ultra-conserved element locus
            uce-1900, sequence.
ACCESSION   KCLJ01000968
VERSION     KCLJ01000968.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 390)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 390)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..390
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="108634cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>390
                     /note="ultra-conserved element locus uce-1900"
BASE COUNT          149 a           67 c           75 g           99 t
ORIGIN      
        1 gagcggggca gggagctcag gggaagcagc cacacaacca cattctatac aagccattta
       61 tttgaaatgc caactaagga taaagtcagt gttacatgct tctcagcaac agtagaaaaa
      121 tagaaccagt gaaaaccttt ttacaactgt aatggtactc aaaagagaaa tgtattgttt
      181 tacaatgcat cacacaagac tagaattcaa gtttggaggt acctaaataa aaatactaaa
      241 aaaacactat gtacaattga agcgtaaaca agttttacaa agtactggtt atgcaggttg
      301 tagaaaaaac acttgcatag gacatgaagt cagtttaaga aagttttctg agcctttagc
      361 attgaaggca cttgacttta taccagtaac
//
LOCUS       KCLJ01000969             528 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 108740cal ultra-conserved element locus
            uce-3505, sequence.
ACCESSION   KCLJ01000969
VERSION     KCLJ01000969.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 528)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 528)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..528
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="108740cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>528
                     /note="ultra-conserved element locus uce-3505"
BASE COUNT          173 a           92 c          116 g          147 t
ORIGIN      
        1 aagaaagcag cgcaaccaac actgcttggg gaagtacaat ttattcagat tgttttggga
       61 gcagggagga atttgaacac atgtaacaaa acgtggtcag tttgatctgt taaactaaaa
      121 tggcagacca gtttaagtcg acactgagct ctgacaatca agcccaggga accagtgaag
      181 gaacttgtat gaacttacag cgcaaaccgt cagcagactg ggaagagttt tgagggttac
      241 ggtaaatgtt caagagggca atggtctgaa atacaaaacg caacaacttt atattatgga
      301 aaataatttt aacaagaaac tggtttcctt tagggtcgct ttagtcgagt ctgtgctgaa
      361 agagaggtgg ttattctctc ccaagcagga gaacttctgg tgacctttct atatcaacct
      421 aacactgtaa agtaatagag atctcatgat attattgtat tcttaatttc actccattca
      481 ccaatattat tataaagggg ttttgcatga tttcagacag ctctgaaa
//
LOCUS       KCLJ01000970             394 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 108849cal ultra-conserved element locus
            uce-2846, sequence.
ACCESSION   KCLJ01000970
VERSION     KCLJ01000970.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 394)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 394)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..394
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="108849cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>394
                     /note="ultra-conserved element locus uce-2846"
BASE COUNT          132 a           76 c           69 g          117 t
ORIGIN      
        1 aaagcattac tcaacagcct gttctgtaat ttaacagata tttcaagtct ctctcaatta
       61 cataaagaaa gtattcagtc aactacaatc aaagttaaaa caaaaaagtg cctgtgatcg
      121 aaggatcatt attccagacc tgttgtgaat cagtgaaaag gagagtagca aaggacatac
      181 cttggaactg ctcccaaaac aatcaagttg gctttttgtt tgttgtttcc aattacagca
      241 tttttcatat ctctgtaaat ccagaaagaa aaacaaaccc tggtaaatta tgctgaggta
      301 ctgagggctt atctatagaa tttactattt ccatgattat caagcagttt tccacatgtc
      361 catgctgcag ctacagactg ggcagtgctt cagg
//
LOCUS       KCLJ01000971             628 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 108955cal ultra-conserved element locus
            uce-2540, sequence.
ACCESSION   KCLJ01000971
VERSION     KCLJ01000971.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 628)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 628)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..628
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="108955cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>628
                     /note="ultra-conserved element locus uce-2540"
BASE COUNT          176 a          147 c          135 g          170 t
ORIGIN      
        1 cagctagaag tgagatcgtg ctgccttttt ctccttaaac tcttggtgcc acaggtacga
       61 ctctaagtgc cccctgttaa ttgtcatcct gtttctgcct gtggctccaa aacgcgctct
      121 ccacaagtgg aaaggaccgt gtctgttcct tgtcaattcg catcagttta aggtcaggaa
      181 agctaacggg gaacaaggca ctgcagcatt tgaactcaac cttgccttcc caaggaacta
      241 actgacaatt agtacaggga tcagcatcaa aaaagagcaa cccagcgtga agcctgtcta
      301 attagtcata tgaacggagg gcttcccctc cacttcctca ggaacacatg cctgtcagat
      361 ctgatacaaa gagacttctc tccctaacat aatactgaaa ttaggttgag aacaggtagc
      421 cctgcttgtt taagcaacag gaggcttagc gatttgcaca gtttcagcgt acttacgacc
      481 atgtgcgatt gcaggatgtt tccttccttg cgttgatcat gttgctaatc ttctcgattt
      541 aataacactt cttgtttaga tggaaaaatg agcaagggga aaaattagag atgaaagctg
      601 aatgacagtc tcctaatctc agagaatt
//
LOCUS       KCLJ01000972             684 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 109067cal ultra-conserved element locus
            uce-6342, sequence.
ACCESSION   KCLJ01000972
VERSION     KCLJ01000972.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 684)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 684)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..684
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="109067cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>684
                     /note="ultra-conserved element locus uce-6342"
BASE COUNT          211 a          134 c          134 g          205 t
ORIGIN      
        1 ctaattcagt ggcttctact tttgttattc actaccaatt cctctgcacc cagcaatgcc
       61 aagaggtcaa caattaaatt aattcagaat acatcatgaa cgtaagagtg accctctatt
      121 atatcttcat tttttccctt tgatcatccc tttatttgac tgcatttcag taaattatcc
      181 atgtagtttt tattttgaca gctctcttta cagcagtaaa acaaaatgtg tgcattgcaa
      241 atggcaaaga ttcaaatttc agctatgttt atccaaaata gcactgaact gcttctgtac
      301 ttatgctata ctgcctacag ccttacggaa ggggagacag atgggatgaa tttagcaggg
      361 aaacagctgt ggcttgaaga agagacaagc aaaagttttg ctatcaggct tcattatgta
      421 tcaaggtacc agtaaaatgt gtatccgtaa ggcagccaaa aaagtgtttt tcatttgact
      481 agtgataatt accttttctc aacagctgac aatgttctaa gcaccattaa ataggtataa
      541 taattaagca ataagataag acaggcagtg ccttgctggg gattattgct cgcctcgggg
      601 gtgttgcaag gcacaaggct gaagggtgag tgacttcagc cacccgagaa atgtaataat
      661 ccctcagaaa tgcactgcct ggag
//
LOCUS       KCLJ01000973             689 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 109178cal ultra-conserved element locus
            uce-3134, sequence.
ACCESSION   KCLJ01000973
VERSION     KCLJ01000973.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 689)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 689)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..689
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="109178cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>689
                     /note="ultra-conserved element locus uce-3134"
BASE COUNT          242 a          137 c          113 g          197 t
ORIGIN      
        1 tttgtgttta aaagccctca ttccttgata ggtctgtatg tacactgcaa ttatgcatgc
       61 atacattaag cactaaatga aaacaaaagg catttaacgt taattactct agaaagtcac
      121 catattgtga tcacacacag ctccactgtt gctgcccagc tagatatccc actttcgtgc
      181 aaacaacaga accaaattga attacataaa aagaagctac atactgactc ccagcagtat
      241 gttttgacaa aacactttgt ctacttaaat gatttcagaa gctgtagtca aaagccttga
      301 ctgcaaataa tgggttcata aaacctatct ttaaaatttt acctgacagt aatgctgtgc
      361 aaatacctgc acttctagtt caccttctcc acttgtttac atcaggattt taatagagtg
      421 gctgtcacag aacaacagct aaaggccact gtttgataag ttactgtaaa aatagactgc
      481 ttaaaatgag aatttcctcc taaattcagt catcacaaaa aagtggtggg taggaaaaca
      541 ttgaagagag acaatttcta ggaggactgc aataaagtct tttcaagttc agtgacatta
      601 taacctgcaa tgactttgca agaaactaca tttcccacct gtcttcagtt ttactgagaa
      661 atgacaaaaa tcaaaggagg aaaagtcag
//
LOCUS       KCLJ01000974             680 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 109289cal ultra-conserved element locus
            uce-1766, sequence.
ACCESSION   KCLJ01000974
VERSION     KCLJ01000974.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 680)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 680)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..680
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="109289cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>680
                     /note="ultra-conserved element locus uce-1766"
BASE COUNT          221 a          155 c          150 g          154 t
ORIGIN      
        1 caggaggttc tggcatgcag cgcttgctca gccctcagct catatcagca taaacacttc
       61 atcacagctg acacgctgat atgctaaatg agtaagtgcg gtgcacaaag aggtcacagg
      121 gaagttaact aaagggatta taagggacag tcaacacact tcaaaaagaa aaaacctgat
      181 aggtgcagaa aacatggtaa atgagcccga agaatgcaaa ccctccgccg tgcactccat
      241 tacagccctg acagtccagt tccaaacagt taaatatgaa actgtcaaca agggcctgtc
      301 ttaataacca aacttgaggc cttttatcct ggaagattta tgaagtaatt ttaaagaggc
      361 ccaagcaaac atctgtcaat aaattgaatg ccggctacag gatttacaag caagacaaga
      421 atttctcatt aagtgcacat tagcactgtg gggatcataa atagtaagag ggcaggatgc
      481 tgagcctctc aagctgtcat taaaacacta tctaagaact aatgaggaag tgatggaagg
      541 atactaatga tccctcaggc tcctttcatt cagcggtgct tgtgatacat ttgccacaac
      601 tagggtttca gagcctccca acctctgtcc ctgcaaaccc aagggaccct gagtgctctg
      661 ggggaccagc aatggcattg
//
LOCUS       KCLJ01000975             814 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 109509cal ultra-conserved element locus
            uce-5451, sequence.
ACCESSION   KCLJ01000975
VERSION     KCLJ01000975.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 814)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 814)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..814
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="109509cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>814
                     /note="ultra-conserved element locus uce-5451"
BASE COUNT          250 a          169 c          161 g          234 t
ORIGIN      
        1 tcctctctga gggcttatct atgcagagtg gttgctgaga aataatgaat ttacaacacc
       61 tcagctccac aggtgggcac tcttaacatg ccgtaggaga aggtgctcca tgtgaaaaat
      121 agagagaaaa tattccctgt gaggattttg aggctgagtg cagcttcctt tgctctacag
      181 gaggcttcag ccacactata aaaataacaa cccacaaaag tctgtctgag agggtgccac
      241 tggttgtcac cagggcatag acagcctcac caactgcagt gacagagcca cccatggtaa
      301 atgctggaca actcttctga cctgttaata gctggcagac tatttgatga cagttgcaag
      361 aatctgatgc acagcagtat cctttacagc agtttaatct ttgtcatcaa atcccccagc
      421 agccatgatt aatagcagca cttgagcttg ttttgaaagt tgtatatttg gcagctatga
      481 actttgatct atggtttcgc tttaaagaat cattatgaca caaacttttc ctgtaatcct
      541 tccatctaat taaaccacac acaaatactg tgtggggaaa tatgatgcta ttgatataag
      601 ctgtgtgttt attacattat tttaggcact ttattaaagt ggatagttgt tcccagcaag
      661 atagtagata agctccccaa aaacaataac atcacccaga aagaatatat aagaaaattt
      721 cccaaggcca aattcgatta gaaactttct ttgttgatta atactgtgcc cttgaaccca
      781 ttgagggctc agatgtttta acctgggcta aaat
//
LOCUS       KCLJ01000976             443 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 109621cal ultra-conserved element locus
            uce-3084, sequence.
ACCESSION   KCLJ01000976
VERSION     KCLJ01000976.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 443)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 443)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..443
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="109621cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>443
                     /note="ultra-conserved element locus uce-3084"
BASE COUNT          135 a           77 c          111 g          120 t
ORIGIN      
        1 ttttttgagt ccaaggaggt gtaattggta gaaagcagag gagctctgtc agtaggtgat
       61 gggaagcgac ggcaggctcc aggaccggcg ccggagcaga tgttctctac ctgcctcgtt
      121 actaatttca acaagtgttc gccttctagc tgctgccagc aatggcatgg tttgttacca
      181 tgagcaattt tcttaattaa cagacattaa ttagccattt agcaattttg caagcatttg
      241 tttagcagct ttcctaaaca tgaataccac tgtgataatg gtactgatta gagggtcccc
      301 taattaacag tacagggaag gaaaattgaa atcacataaa ttaaaaaggg aggggaagtt
      361 aatgaaggca ggacatattt gcacctgcaa atcttttgta cagcggaaac ttgagtgcaa
      421 tgtaaataaa gtaagagggt ggg
//
LOCUS       KCLJ01000977             646 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 109725cal ultra-conserved element locus
            uce-7690, sequence.
ACCESSION   KCLJ01000977
VERSION     KCLJ01000977.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 646)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 646)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..646
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="109725cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>646
                     /note="ultra-conserved element locus uce-7690"
BASE COUNT          218 a          113 c          108 g          207 t
ORIGIN      
        1 acatctcaac ccatttaaaa agcacagcag tttttaggag gaatgcttgg gaataactac
       61 aaatagtaag tttccctagt tctttttgtt agttcagaca gcagaaacta ccatttcaaa
      121 tgtgatagtc atatctgtat ttcatttata aattcaacta cgttacagct atattcatat
      181 ctttccagag taaattatgg gaaataacca tttgtcttca ttgtagacac ttttgcatgt
      241 atagtaaaaa acaaacctct attcaataac tgcacagagg caccattaaa atcaaattta
      301 cagtaaacag aacctgcagc tggggtaaaa cactaactgt tagtatttta attatcagtg
      361 aagctttcgg aggtctaaca tctgctcata gccaaatgac agcagctgct tatgtacact
      421 taaaacaaca tgaatttctt ctataaatat taaaatgaat tgtatgtcgt gtgttcattg
      481 cggctatatt cctatttgtt taagtatata gggtattctg aacttctttc ttgtggcaaa
      541 ttcataaagg gctgacctcc tcaaaagaat gagaggcaaa ggcagcaaaa attcttgagt
      601 ctgtaaattg aaaatgttta gagacagtac tggaggtcac cctctg
//
LOCUS       KCLJ01000978             684 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 109834cal ultra-conserved element locus
            uce-2612, sequence.
ACCESSION   KCLJ01000978
VERSION     KCLJ01000978.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 684)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 684)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..684
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="109834cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>684
                     /note="ultra-conserved element locus uce-2612"
BASE COUNT          198 a          140 c          169 g          177 t
ORIGIN      
        1 taaagtatgt tggcttttaa ataaactgtc aagtaaaact gggcattgaa aacaccaagt
       61 gagtaagtgc ctttgtagaa gggctgacag ctcggctgtg tgtgagatag agagctgccc
      121 aggcctgagc tgggaaggct cacacatcct gcctggaagg gatgcttgct tctggattta
      181 cggctgcgca atgctttggg gtgatcccaa cccggggaac tggccactgg cggtgcatgc
      241 tctgcaagtg ctggttctgg aattagaaag tttggaggtg caaaaacata attggaaaac
      301 tccctgttta aaaggctaat tgatttcaca ggtgtttaat tatcatttgc tgtgagataa
      361 taccttgtag tgccataaaa aatggattta attttcgagt gcttgcaaaa ccattgccaa
      421 agccaagtta gagcgaaagc tagataatta ttctataaat caaacacact gcctccttta
      481 atacttggct ataatgatat ctgacgacct tgaaactaac ataaaaagga ttgccaagtg
      541 ttgaaaggtg gggtatttct ttcagtccag ctcatcactg cagccactgc tacctcactg
      601 cccaggctgc tggactccaa gggatgctac acagcagcag gcgtgaacag agacttcgga
      661 acagtggtaa atgagcacga gccc
//
LOCUS       KCLJ01000979             602 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 109945cal ultra-conserved element locus
            uce-1072, sequence.
ACCESSION   KCLJ01000979
VERSION     KCLJ01000979.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 602)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 602)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..602
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="109945cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>602
                     /note="ultra-conserved element locus uce-1072"
BASE COUNT          212 a          139 c           97 g          154 t
ORIGIN      
        1 aacttcccag acaaaacgca acccaagcca attaagacac aagtgtttaa agacatgagt
       61 agtaattaca aatgtattat tcatacctaa tttacaagat gaacttcttt cagtaaaata
      121 ttaaactgtt tacatgcatt caggaagaca atttcccaac cccgcgcgtc ctgctctgga
      181 gcggtgacta ttgctatgca acaaccccac agacttacag tgtacactgt ggagtaatca
      241 gaaaatgttt gacctcagat atctacttga ccccacagaa atgcagactc gctcgctata
      301 aaatcctaaa caatggggca gacaaggtca gagggtcaaa gcaagtatta acaggtcatt
      361 gtgcaaccca cttgggagca attacttctg gtcacggcta agtggacact tgattgaata
      421 ccactaagac agctcacatc ccacagataa caatcctcac agcgattaag aattaaagcc
      481 cccatgattc agcctttatt actcaaatga acctaactat tccataaaaa actcttggta
      541 tatgcatgat gcaaggtcta aattgaaatg ccacctcatt aaacaataat atctaatttt
      601 at
//
LOCUS       KCLJ01000980             690 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 110054cal ultra-conserved element locus
            uce-4885, sequence.
ACCESSION   KCLJ01000980
VERSION     KCLJ01000980.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 690)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 690)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..690
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="110054cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>690
                     /note="ultra-conserved element locus uce-4885"
BASE COUNT          194 a          132 c          141 g          223 t
ORIGIN      
        1 atagcttggc taaggtagac agagcaaaat acagagaata gttgctccag ggctttgaaa
       61 cccctcaagg caaggatcag gatacaatta gctcatgtct ctacctccag tctgaatcaa
      121 tctccgaaat aaaagttaaa ttaaattaac tgatcacacg ggcataaaat tgatctcctt
      181 cgaaacgtgc atatagaaag tatatatatc gcgttttttt tggtggaaaa aacagtctca
      241 ttccagccta caacttgctt tttactctcc tcttgcacag aaaagctgat tttaatcgtt
      301 gtgattagtt ttgatgtaac gtttccgcgg gcgatttctg caaatggatg gagtgtttct
      361 ttgccagaag agggaaaagc agcagatgat gataattata aggattgttg gttgtttctt
      421 tcttttcttt ttatttgtat ttagctatgt ttcttcactt tctcgagttg acctgacatt
      481 gccattgcac taaggtcgca caacttgttg attaggatca cctcccgttt tgatcgaggg
      541 atatgggata atttggcagt ggagcaacac attttctgtt cccttggcta tataacttcc
      601 caaatgacgt gtataaaaat aagcacatgg agtctgcttt gccccagtcg agtctgaatc
      661 aatgcctggg ggtgatacac aaactcattt
//
LOCUS       KCLJ01000981             643 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 110166cal ultra-conserved element locus
            uce-7460, sequence.
ACCESSION   KCLJ01000981
VERSION     KCLJ01000981.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 643)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 643)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..643
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="110166cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>643
                     /note="ultra-conserved element locus uce-7460"
BASE COUNT          191 a          131 c          128 g          193 t
ORIGIN      
        1 agttataaga gagcaaatac tacccatcac ccataccaac tccagcttcc tactccccca
       61 catcacaagc tttttgtact acatgaaagc tagtctcaaa atttcatgtt catagttaca
      121 gattaaataa tattaaacag cattacactg gaaagatttg tttccaagta gcaaacagat
      181 tccccatatt attctttact gtaagtagtt gttgttatat cttattcatc tggaaaataa
      241 tttcaaacag ccatgaaaat agcggatttc tctctgttaa aatgatagtc agagcctggg
      301 ctgctgacat atagtaacat gattcacttg gacagttact gactgcacat ccaattcatt
      361 tcttctgtag agcaccaagt tattatctga aatgcacaag gtgtctgggg gtaacatatg
      421 atcagccagg gacgcttttg acggcttgaa gagcaatcaa taaaaattgt ctccagcagt
      481 tttgtagagt atggaagttg gtggtgaaat gaagtgatgg agattaactg gtggaagtca
      541 atgccccggt gctgtgaacc ctgcttttta attaaagatc caaagctgct tttccctgga
      601 atggggtgtt gtgccagggc ctgtgctgag gaccccttcc ctc
//
LOCUS       KCLJ01000982             462 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 110277cal ultra-conserved element locus
            uce-2992, sequence.
ACCESSION   KCLJ01000982
VERSION     KCLJ01000982.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 462)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 462)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..462
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="110277cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>462
                     /note="ultra-conserved element locus uce-2992"
BASE COUNT          157 a           74 c           86 g          145 t
ORIGIN      
        1 tttttacact aagttacagt tatcttttca gctcagtaat atgaatttac agaaatcttt
       61 gggttgcttt atcttactgc aacatcaaat tggctggtga aatgatactg gcagtataag
      121 tcattacagg tctgacgtta cagttgttac acattgctga atctgtcaaa tgaaaaggga
      181 gcacaaaggg aatttccaaa tgcagctgct atttcccatt tgttaaatcc ttttattaca
      241 ccatataagt acacagctgg gaaatactat agagtaggag ttaaaacaaa atattttggc
      301 ttccagacat tcagaataca caaaggactc agtggaaagc aatgcctgat atcaaaaggg
      361 agtgaaagtt tgaaaacatt tctagccagt gtttttctga taatgaacaa tgtagtttaa
      421 aggtatctta cattacagaa agtgctgcat gccataaatg tt
//
LOCUS       KCLJ01000983             611 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 110386cal ultra-conserved element locus
            uce-6157, sequence.
ACCESSION   KCLJ01000983
VERSION     KCLJ01000983.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 611)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 611)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..611
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="110386cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>611
                     /note="ultra-conserved element locus uce-6157"
BASE COUNT          168 a          142 c          115 g          186 t
ORIGIN      
        1 ctgtcccaca gcacagacag ggtcctaaac ctgtcctggc tcaggccatt ccaagcccag
       61 tgctgccagc ccagaacgct gctgagtggg aggctgccct ttgaacaatt ccagtttctc
      121 acaagaggtt catatcaacg cagctcagat ctcagccggc tcacgtaagg gttaaaaaca
      181 gaaagtgcta tccactggtt tgctctgatg ttcctggaga tattgtcact ggatgtatcc
      241 tcagaagaat tctattcaac acctctgtct ttaagtacaa agctgtaggc tgtagcagct
      301 ttaggaaaca taagtatcct tttttctgct gcacagtatc tgtgtgtgaa attctctaaa
      361 ggggtttaag tatttaccct gaacactatc agacagtttc taaaattttc cttatcctgt
      421 tgcagaaaca cttcaaagag aatcataaac acagtctttt gtgctttcag cacacatgtt
      481 gttttggaag cttaagtctg aattccctca gaattgtaaa tacctcaaag atgtgcaata
      541 caactttact tttttacagt ttcattgtga ttctactaca gacaatgcta aatctgtctc
      601 cgatttctga c
//
LOCUS       KCLJ01000984             449 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 110497cal ultra-conserved element locus
            uce-6509, sequence.
ACCESSION   KCLJ01000984
VERSION     KCLJ01000984.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 449)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 449)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..449
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="110497cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>449
                     /note="ultra-conserved element locus uce-6509"
BASE COUNT          143 a           81 c           88 g          137 t
ORIGIN      
        1 gatgttccta aatacagtta aattaacatt acttgcagtc catgtcacat ggtctctata
       61 acatcaaatc acttaagcag tatgaattgg ttaacatatt ttatgactga gccatattaa
      121 tgagtattaa aaccagccca acatgttaga tttaataggt ttttttgtta ctgtgtgaat
      181 atgaatattc tgatgaaact ggtgtagctg ttgctttctg ttgctctctg ttactcagtg
      241 ttttcagcgc ctgggaacag atggtgcacc acctgactct gcacactcta atgtaagatt
      301 cattgtgctt cacaggaaat caaagatcaa gcaacattgc agaaggtgaa gcagtacctc
      361 agcaaccagc aacacagtat gatatagtca agtggtggag caagaaagca gaatgagaga
      421 aggaagagac acatatcctt ttattttct
//
LOCUS       KCLJ01000985             329 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 110603cal ultra-conserved element locus
            uce-6522, sequence.
ACCESSION   KCLJ01000985
VERSION     KCLJ01000985.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 329)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 329)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..329
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="110603cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>329
                     /note="ultra-conserved element locus uce-6522"
BASE COUNT          106 a           62 c           44 g          117 t
ORIGIN      
        1 tttataaaag catgctgtct ttcaattaac atagtaatga cctattgtca cctgttacca
       61 tgctaatcct gagctggtgt gaaattactt tataataaac actatgcagt tctgactttc
      121 aattaatttt tcccatgctg cgctaaatca gattaactgt accccaccct tttgaccaca
      181 gacataattc cttccttata atgaaataga ggattaattt atatgaagca tatctataca
      241 catttgcaaa taaatgtaaa gatagacttt gtaccatatt tgcactgttc acagtgtcag
      301 gttgaataca gacttaattt ttatgttca
//
LOCUS       KCLJ01000986             783 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 110704cal ultra-conserved element locus
            uce-5822, sequence.
ACCESSION   KCLJ01000986
VERSION     KCLJ01000986.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 783)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 783)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..783
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="110704cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>783
                     /note="ultra-conserved element locus uce-5822"
BASE COUNT          257 a          165 c          142 g          219 t
ORIGIN      
        1 atgattaagc ataaatctgt cctttaaata tgcatagcag taatagctta aatgcagctc
       61 aaatcatggc cagtcttgct gcatatacaa atctgcacca ggcagcgcta aattaaaaag
      121 cacctcaaaa gacaaagaaa aaattggttg taaactcctc tgcattgcaa agatctcttt
      181 tgtctgtcaa tcaacagaaa agtattattc caccatcaca aaaggcaaac ctttggaggc
      241 agtataggtc tgtgtgttgt gcaaatgtgc agttgctaag aagcaaatat gcttctcctc
      301 taatcaaata gcccagctca gcaatgctgc tggcttgggg caagaagcaa attccaccag
      361 ccacaaactt agaaacagtc ttgaattatt tgttgctgac cgctggctga accctgtcct
      421 gatgagcacc atcaccatta gccacttctc agtgtattcc atcaaccaat ggcaatagca
      481 gcatgctaca gctcaggctg caaggaattg atcaaacagg gtaatgagac tatttcttca
      541 tggaggttat tttaaatgaa tataaatatt ttctttctac ataatttgcc acaaaaggtc
      601 actgaactcc ctgcgattct aaagaaaaat gctgtggtat cccctttata tatttgagtt
      661 aggatatagc caacaaacaa ttctgggcat ttttgatgat cgtgtaaatc ttaatgaggt
      721 ggcatcccag acaattgatt agcagcaacg ttctatcttc acatttacgt acgaacaaaa
      781 aga
//
LOCUS       KCLJ01000987             501 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 110816cal ultra-conserved element locus
            uce-5123, sequence.
ACCESSION   KCLJ01000987
VERSION     KCLJ01000987.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 501)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 501)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..501
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="110816cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>501
                     /note="ultra-conserved element locus uce-5123"
BASE COUNT          130 a           95 c          113 g          163 t
ORIGIN      
        1 cttttacctg agcaaaattt actgaacagg tgttaattgg ttagaatggt tagtaggcat
       61 gaaaacctcc tcagttccta aaatgagcat gagtcatgtc tttcctggac aagtagctgt
      121 gcattaaata tgctggcaca tcttctgctt gagcaagtgg accgaaatgg tgtgaattgt
      181 taatgccttg ctgctttggt tcacggcttg tgattgatca tttgtaacta tatctactcc
      241 ttgttccatg aaatcaagta tggagtaatg ggttcatcag atttttgggt taaattgaga
      301 gtgaagaggt actgtgtgtg gaaataagag ttgccatgtt cggggctggc cttgtaacag
      361 catggaatct aaaggcgata ttcaaaacca cttcactcat cacacgctta ctgattctga
      421 atagggtcca tttgcagggg acatttggga gttttccaat gcactttatg cctctttctt
      481 cacttctacc accctgcaca t
//
LOCUS       KCLJ01000988             657 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 110928cal ultra-conserved element locus
            uce-7479, sequence.
ACCESSION   KCLJ01000988
VERSION     KCLJ01000988.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 657)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 657)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..657
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="110928cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>657
                     /note="ultra-conserved element locus uce-7479"
BASE COUNT          227 a          118 c          125 g          187 t
ORIGIN      
        1 aacactggcc agtcagaaca aactggagcc gtgtttttcc aataatattt cattgaacta
       61 gaagcaacag attaaacacc tttgtataca ctggaaggca aaaaaataat atggaaatta
      121 aaagaaattt ggttaaaagg ttgcacacct tctaaatcct gaatgcaatg cagtgcaatt
      181 atgctggaaa agccactgct gttgctgtgc agctgttgga ggagagggtt acagtgacaa
      241 acagcttccc tgctacaaag gtggcaggaa atctatcaaa ctggacaata aaattgcaat
      301 tgagtttctt tggcttttta tagcagctgc atgtatcttg atgtgtagct ctgcaaaacc
      361 tatccaattg tgtaacactg gtcctttatg tacttgttct ttatcataga atggtgttat
      421 aaattagtgg cacgaacaca gagggttata aaaataagca gtaacccaat acaattagag
      481 agaaatagga aaaacccaaa ctggttattc tcttagcaat gttaaagaaa tatttttgtt
      541 cccataatcc ccacattact ttgaaagcat gacagaaatc aaaaacagct gagatgcact
      601 tagcatcgaa caatttgtcc actgaattat gcctacacta ggttatgtgt gaatctc
//
LOCUS       KCLJ01000989             498 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 111038cal ultra-conserved element locus
            uce-2646, sequence.
ACCESSION   KCLJ01000989
VERSION     KCLJ01000989.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 498)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 498)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..498
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="111038cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>498
                     /note="ultra-conserved element locus uce-2646"
BASE COUNT          161 a           97 c          112 g          128 t
ORIGIN      
        1 agtaaaatag cagggtgaca ccgaccctgg ctgtagcaat gcaaatgagg cctcactgaa
       61 ctggagtgca caaagcacaa ctgtatattc cgtacacgag acagttaaaa atttgaacat
      121 aaggtagcat ttcctttatc atatcccata aaaatagcaa tttgctaaag cccttgtagc
      181 acagtatgga aggtggtgta ttttactgat aatgtagaga tgacagatag tcctatacta
      241 ggaggtttca atggtgtctt gctgtatagc ataataaatt gtgaggagca gagacagagg
      301 acagtgcagg caggcgctgc tccacctcca gtagccaaat aattcagccc cggctcagta
      361 attatgctgt gtgaaaatat gggattaatt agactggtac actaacacac tgtagtctca
      421 ttaaaggctg aacagcattt tcatagatac tgccacttga acagggctgc tgctaatgtg
      481 aaaagacaaa gtctcttc
//
LOCUS       KCLJ01000990             686 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 111143cal ultra-conserved element locus
            uce-2003, sequence.
ACCESSION   KCLJ01000990
VERSION     KCLJ01000990.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 686)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 686)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..686
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="111143cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>686
                     /note="ultra-conserved element locus uce-2003"
BASE COUNT          232 a          112 c          119 g          223 t
ORIGIN      
        1 aaagcaacct tctttcacag cagatttcag ttttgctcag agagctgtat agcatttatt
       61 ttaactcatg caaactttag gtctctgatt aaaaaaagta ggagctggat gatatcaatc
      121 taatcagatc attgaggaca gccaacaaga ataaatagta tgtgaaaagc cagatttcca
      181 atgaaattaa atgaaaagtt ataaggctgt ggttttagga acagcctctc ttttgtggtt
      241 tttggttgag tgtgttttta taagaacatt attgctttaa gaaaaaaatt taaaccctga
      301 gaaattactc tcagtctaac gagttctttt ccactgacta cagacatcat taggggatgg
      361 ctatagcccg aggctgtgca tgaacttttt cttctaactg tacactttat gtataattta
      421 gctttcttgc ctaaattatt caagcaaata gtgagtgaaa ataatggagt tcactgaaac
      481 cttccacagt attaaaataa aacacgttga tttgaatttt taagcttttt aatcacggat
      541 ttcaaatgga atacgcgtgt cttcagctct tctctgcttg tccccctaga agaaaggaaa
      601 cgaacttcag caaatacccc attaattaat aaatgttact tatgactgct tgaagtagaa
      661 gtaatagtaa ttaatagata cagaaa
//
LOCUS       KCLJ01000991             380 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 111253cal ultra-conserved element locus
            uce-5052, sequence.
ACCESSION   KCLJ01000991
VERSION     KCLJ01000991.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 380)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 380)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..380
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="111253cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>380
                     /note="ultra-conserved element locus uce-5052"
BASE COUNT          137 a           62 c           58 g          123 t
ORIGIN      
        1 tttacctgac actgccttct ttctgcaaca gaggagtgtt ttattgcatg ttaaaagaca
       61 agatatgtat tgaaagtagc aattttattt gagttaaaat tatttacaaa aacccaaaga
      121 catacttcat gaaactggta caaactattt ttcctgccgt tggcttttgc tccaaagatc
      181 acagctgaga aatactgtat aaaataaaaa taggattgga ttcagaaaag tactctactg
      241 ttctaatttc caattgagag tatttacaca aatatttaca atggaaaaaa tgttacttta
      301 aaactttaat ttgcaagttg acctcaagta ccctttaatg cagagttatt tgagggtcta
      361 acacacaaaa atgcactgca
//
LOCUS       KCLJ01000992             459 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 111362cal ultra-conserved element locus
            uce-4473, sequence.
ACCESSION   KCLJ01000992
VERSION     KCLJ01000992.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 459)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 459)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..459
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="111362cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>459
                     /note="ultra-conserved element locus uce-4473"
BASE COUNT          151 a           69 c           59 g          180 t
ORIGIN      
        1 cctcccagtt taataaaatt aaagtaattt atgtcatatt gatatgtcga tatgtttttc
       61 aataaacttt ttcacagaga aaattctctt cactttaaaa attataatta tatgtcttcc
      121 tcccactttg aaaatggcac aaggtgctca tttgcagagc tctactgttc aaatcttcac
      181 tgagaataga aatgtcatga ctcagttaac aatgctttat tattcacatt gatctttttt
      241 tatagtgttc tttatctcaa aaacattgta aatcagatat cttcctccca ctcttttgtt
      301 catttgcaaa tttttattat tctagtttaa aaaagcaatg gagtgtcaag agtcagtgta
      361 tattgtttat gttctttttt gctttaaaat tacttttaac tataaaaagt aagatgtata
      421 gcaggagctg catttaaaga tgcttaaaaa agaattgaa
//
LOCUS       KCLJ01000993             589 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 111470cal ultra-conserved element locus
            uce-4549, sequence.
ACCESSION   KCLJ01000993
VERSION     KCLJ01000993.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 589)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 589)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..589
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="111470cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>589
                     /note="ultra-conserved element locus uce-4549"
BASE COUNT          179 a          112 c          124 g          174 t
ORIGIN      
        1 aaaatacaag caaacaaccg acacattagt taagagacct tccattttac tttggcagtt
       61 cacgataatg gaatttaatt gtggaaaaag ctgaataatt ttagctgaat gtcatttggt
      121 tcattcaaac tgggaatcag ggacattttt aacaaaggtt ttcaaacttc ttttgaaatc
      181 aggaagctgc tgtgcacaga taaggggaga ggtttgagga ttctctatca gaaatttcaa
      241 ggttttttcc atctgctttt tcacattaac tggtaattat ccagaaaggc acataatagt
      301 gcagaaatga cagaagctga caaaggtttt cctaagatat gtaaattgtc ggtgataggc
      361 aaggtgcaac agaaaggctt tctacagcac aattatttat gccagtttca tttgctttta
      421 ggtagcactg atggttctac cccactgccg cctttatcac aggcactgca cattccctca
      481 ccaccagcac acagggaagg tggcaaaaac tgagcttgga gcttggtggt ctcctccaat
      541 gtaaatatgt gcacatgtgt gtggagatat ggtggttata accttcccc
//
LOCUS       KCLJ01000994             625 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 111579cal ultra-conserved element locus
            uce-278, sequence.
ACCESSION   KCLJ01000994
VERSION     KCLJ01000994.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 625)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 625)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..625
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="111579cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>625
                     /note="ultra-conserved element locus uce-278"
BASE COUNT          186 a           97 c          119 g          223 t
ORIGIN      
        1 acactggtta tgtaagtgga cttagaaaat aggaggatgg gggacgtcag ggaagtctgt
       61 ctataaatat gctacataac caaacttttc taaatgaagc actgccgttc tgcaagtgaa
      121 ataaagcagt tgctgttgaa tgcatactga gagacaagtc ttataatgtt cttcatttgt
      181 tgaggtttct ttgcattaat taaaaaaaaa caaagtattt taatgtgacc ttcatttggc
      241 atttgtttca acttttcttc tattttattt aattcttcca cttctgttgt tcaattagtg
      301 tttgacccct ttagcagaga tttaaattaa atgacatttc aatgccatcc catatttaaa
      361 atactgtgtt agttgtggat cataaaggat gatcttcgtt ctttagctaa tttattcatt
      421 taacaatttc cctccagaag ttccagcaga aggctctgaa gcaaactaag cagaagaaat
      481 ccaagtcggc tgaatttctg atgggtgagc cttgcttgat gagttattgc tcataatttg
      541 tgtaaggatt aattaactaa ttacagacaa atggctgtgg gcgaaatttt gctcttgctt
      601 gtcagggtgc aatttgtaat tattt
//
LOCUS       KCLJ01000995             850 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 111692cal ultra-conserved element locus
            uce-2503, sequence.
ACCESSION   KCLJ01000995
VERSION     KCLJ01000995.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 850)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 850)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..850
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="111692cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>850
                     /note="ultra-conserved element locus uce-2503"
BASE COUNT          245 a          151 c          161 g          293 t
ORIGIN      
        1 aacagtgtat ttgttttaag tgctttcttt tgtcatctcc atttcagtgg ttttgcagag
       61 atttatcgtg agtagaatga aaaggttgtg caaggttcag ttgtagtaag agcaacttgt
      121 ttgtatgcat ttcacatgct gttggtctgt aggtattatt aatatctatt tttagaatca
      181 agactgtgat gcacagagta cgtaggcaca atgtgataaa aacacagcaa tactgtttcc
      241 tttccatttc attataaagt ttctttgacc ctgtggttta ttttcaaaca tacaagttat
      301 ttgttctggt gtattcttaa acaggggttg tttttctccc tttcagaaaa tgagcacaga
      361 tggtgattga tttttcaagt gctgacatcc ctgcttgaga aaatgttccc accttctttg
      421 tgctgagcaa gtcaggcaaa ctaacatgat gatgcgatca tcagtttcat gcagacatgc
      481 agaattgatt gacagggaaa attttaacat aaaccacaca ttcttccagt gtcttcaatt
      541 ttttaatgat gtttatttgc aggatattag cagcagcagg gatttcattt aaaaacttat
      601 ttcagcaaca aggttaaatt gagaattttg ctgcactagc ccagcacata tcagtacaat
      661 ttgtaatagc tcttctgagc cagttctgaa gctaaatgct gtcactggct aactagccat
      721 tctcaggcca ttgcttctgt ttgcgtgact aaatacatac aattaaagcc tagcactttc
      781 attctctatg aactcattgt tatccagggt tcaagtactc agataatggg ccagaagaaa
      841 acaggcatat
//
LOCUS       KCLJ01000996             384 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 111805cal ultra-conserved element locus
            uce-7499, sequence.
ACCESSION   KCLJ01000996
VERSION     KCLJ01000996.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 384)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 384)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..384
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="111805cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>384
                     /note="ultra-conserved element locus uce-7499"
BASE COUNT          127 a           77 c           71 g          109 t
ORIGIN      
        1 tgaattagtt ttacagaaag taattccaaa ctgtaagcca cgactgacct aactacttat
       61 taaaaatgct aatatgcttt tgtgctttga tgtctggtga acaataaaag ggagagagtt
      121 actctgggac actgtaatcc tttatttgtc actaagttat gacacccagc agagctgtgt
      181 gacagtccaa atcaatcatc ccccgtgctc tgcaggcctt ctctgcctcc tgcagagtct
      241 atgcagttta attagctttt tttcacacta gcataatgta catctgcagc ttcagcaaga
      301 aaaagaaatg gaggatagtt cactgggata cggtgcctta aaaaaaaaaa aaaaagtctg
      361 aaagaagaaa catcacaatc cttt
//
LOCUS       KCLJ01000997             384 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 111909cal ultra-conserved element locus
            uce-3265, sequence.
ACCESSION   KCLJ01000997
VERSION     KCLJ01000997.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 384)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 384)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..384
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="111909cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>384
                     /note="ultra-conserved element locus uce-3265"
BASE COUNT          125 a           62 c           63 g          134 t
ORIGIN      
        1 taattaatcc ttaggaattc caggcatttt tcatttagtt cttagcagag gaaaaaaagg
       61 tgcctgaaca actatttgtg tcgtagagtt cataaatgag cccatcaccc tataccagaa
      121 ctgctataat tttatcggaa tgaaaaccat tctctttgat ctcttttagt tcttaaatcc
      181 agcagttgtg tattcaaaca tcaatggaaa tgtggtttca agcttcctct ttcattatct
      241 ttctcaaaga taaaaaagag caaaagaaaa aaaagttctg agctttagag atgaggcaat
      301 atttttacag taatttcttt atctgatttc atcctgttta cagaagctgc tgtttggaag
      361 agagatggtt tttctttaaa taaa
//
LOCUS       KCLJ01000998             756 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 112015cal ultra-conserved element locus
            uce-1703, sequence.
ACCESSION   KCLJ01000998
VERSION     KCLJ01000998.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 756)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 756)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..756
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="112015cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>756
                     /note="ultra-conserved element locus uce-1703"
BASE COUNT          229 a          153 c          142 g          232 t
ORIGIN      
        1 ccaaggatta ttttggaaga aacattagcg gctgtcccag cctggcgctt atatctcatt
       61 tgaaacatct actcattcct gaccaacaaa gaaaatttca ataaagtact tttactggtt
      121 taacagcagt gagctcctgg gattgtcaaa gtgctcagtc ttttccgagg agagaaggaa
      181 tcagcagctc aaatataatt aaccttccat tctcaatgca aactgccacg cacaggagct
      241 ctgcagtcta ttagtgaagt tataacggcc aacaggcaga ggcaaaattg gtcaaaaagt
      301 tggctgctgc tgtcatattt ttagaattat gattaatgac actaataatg cggatgatta
      361 ctgatacgtg tatctcctgc agtttatcat attgcactgg ctgcctacgt ccacaataaa
      421 catgatgcta tcatttacct ctttattgaa ggcaatcctt ctcttgaagg agcacattct
      481 aattactttg taatgtttta tgtcttaaac attttgcagc tctggacctt gccaactgct
      541 tcatgtctac cattgattaa ttacagaatg tttaatcaaa atttagaacc taatgcagtc
      601 atttatgaat gcgctgcaat agttaggctg ccgtcccaag cttggagagt gctgggttca
      661 aaattaaatc ccagaaatct ggaagatgcc aaagatttta cctcgagtga tttgagttta
      721 aaaatcttac ttcagttgat gaatgacagg caccca
//
LOCUS       KCLJ01000999             768 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 112127cal ultra-conserved element locus
            uce-1458, sequence.
ACCESSION   KCLJ01000999
VERSION     KCLJ01000999.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 768)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 768)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..768
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="112127cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>768
                     /note="ultra-conserved element locus uce-1458"
BASE COUNT          255 a          156 c          144 g          213 t
ORIGIN      
        1 tttgtcatcc agctgattaa gaggcaagga aatgaagtta cacggctgca gtattatttg
       61 acttttgtaa aacagaggaa gatactaaag tgacatagac aattttgttt taataaagca
      121 tctataaatg aggtacacac gttcaggtaa tcaacgtgag aataactgac aaaaaattca
      181 gatgaattgt catttccatc gattgttaga agggtgatgg tccttaatct cgcatcaatc
      241 tcaatgtgtg ccactaggac aaaagaagag atgctctgct gagatcagag cagctttgcc
      301 ctctattccc agcgtacaaa tacattgtgt ctgcagatgg gcatgagata gctgcggaac
      361 tgccatgatt tcccaaagct cacccccaca aatggatgaa ataagaagct atgtgttctt
      421 ttgctgtctc cctttgcccc ctgtacatta gcatgtaatc cagaggagaa ataacatttt
      481 ttcaatcact cgcagacatt caattacagc gccagcagac agatgcagaa gctggggcaa
      541 tccaggtcct gtagaagacc cctgacaatt tccacttcat ttctaaccca caccacttta
      601 ttagtaagga ttacttctta atcctattgc cattgtcaag attatataat taaactcccc
      661 tttcacctct attacagtat gaatgtatta ctcaaaccaa tgaattaaca atagaaagaa
      721 acatggaaaa ggctgtaaag aagctcatgg tagaaaggga ttaatata
//
LOCUS       KCLJ01001000             278 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 112236cal ultra-conserved element locus
            uce-5745, sequence.
ACCESSION   KCLJ01001000
VERSION     KCLJ01001000.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 278)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 278)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..278
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="112236cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>278
                     /note="ultra-conserved element locus uce-5745"
BASE COUNT           72 a           58 c           71 g           77 t
ORIGIN      
        1 atgtgtttat ttaaggtctt gtaggccgac tgatgagacc atctttgcct tgtctttgcc
       61 agcagggtac ttattgtctc ctctagaccc atagtcatta gaaccggaat cgctccgctt
      121 gctgtttgcg ctatgcttgg ttggcgtgcc ggggggatgg ctcacctgcc cgttcttctc
      181 gtctgaaaaa agttgtttaa ttacgtcaaa gaagttactc aatgggctgc ctgggtacac
      241 aaaacagagg agacaaaaaa agaaagaaag aaagaagg
//
LOCUS       KCLJ01001001             668 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 112331cal ultra-conserved element locus
            uce-5542, sequence.
ACCESSION   KCLJ01001001
VERSION     KCLJ01001001.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 668)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 668)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..668
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="112331cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>668
                     /note="ultra-conserved element locus uce-5542"
BASE COUNT          187 a          151 c          125 g          205 t
ORIGIN      
        1 cttctattgt ccgtgactta tcattgtcag gattctgtgc atttcatcct tatctatttt
       61 gctggaaatc tgaccatttt caaaggctca tgtagagtta ctggtttaga atgtataaga
      121 atattacttt tactggtttt tgctccaatt ctttcctttt ctcttcctct gtctcgcttt
      181 tttttaaact cttctaaagc gctataaagt aagtatcaaa ggtatcctgg gtaattagcc
      241 attacagtac tgtcacagag gcttctgcag tcaatacaga gataatttgg gcaatggtga
      301 atgacagcat tgtccagact tttgggataa tcaaggacac atccagctgt accagacatc
      361 tgtcagaccc atgaatcatt tcaagtagct ttgcaatatc caggcaagtc gagcaaagat
      421 aaacacttca gcagcacgca gccacggaaa aatactgctg ccaccagaaa gcatttagct
      481 gctcagagct gcaggcctgg ctctcagagc cacgtctctg acgcattttt ttacctactc
      541 tagtatgact gaagtgacct cccctgcaca tggtattcat tagaattaaa gagaaaacaa
      601 ggggacccaa aggctgtaat cctgataaat gcaacatgcc cccttgcaaa tactatttat
      661 gttggcct
//
LOCUS       KCLJ01001002             632 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 112442cal ultra-conserved element locus
            uce-7414, sequence.
ACCESSION   KCLJ01001002
VERSION     KCLJ01001002.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 632)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 632)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..632
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="112442cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>632
                     /note="ultra-conserved element locus uce-7414"
BASE COUNT          195 a          122 c          119 g          196 t
ORIGIN      
        1 tagacatata tgagttctgc aaccttttaa agtccttcta tcccctctgg aggagtactg
       61 taaatatcct tgacacctga aataactgga cattgttaga gtgatgctaa cagagtgggt
      121 taacagcttg tgcgtgtaca aaatattatt atgaccttgt gctgaccaca ttctatgaag
      181 tgttacatga tcagggacag ggaagttgct taatggaagt tatatagtag ctagatgtat
      241 ccttgtcaca cttcatctaa actgatacat tgcaatggtc cgcgctgctc agacctggca
      301 attactgtcc aattccaatc tattccacac tgccactata atgaaaaata attaggaccc
      361 cgaaaatgag ttttcacatg aaatggtttc agtacttgga cacaatcgcc tttggcagat
      421 ggctttgggt ttgctttaat ataataaaga cagttaatca tctctaaaga gtgcacagaa
      481 tgaataaact tttaacacta ctttctcctc tgaaactctc atattgatca gatgaatact
      541 atagagttca agtttctatg gatggtgttc cacacattct tttacatcct ggcgaagaac
      601 cagggccaat tgtggagttt agaaacaaat at
//
LOCUS       KCLJ01001003             694 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 112553cal ultra-conserved element locus
            uce-1514, sequence.
ACCESSION   KCLJ01001003
VERSION     KCLJ01001003.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 694)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 694)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..694
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="112553cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>694
                     /note="ultra-conserved element locus uce-1514"
BASE COUNT          154 a          157 c          165 g          218 t
ORIGIN      
        1 aatataaata aagtgatagg ctggcttttc ttcctttcct ctgatttaca aaacagctcc
       61 aacaagctgc ctgtggccag aaagccgggc ttacaccggg gttaggacgt tgttatgtct
      121 gtttacagtg atttgggaga ctagagggga aaagtttgaa tcaacaaata ttttctactg
      181 gtaactcttt tcagggtggg cctcccttgt ctgttacaag ttatgatgtg tggatgaagg
      241 ctttttccca tgcagtaatg actgtatact gagatttcaa ggggctgttc atgacaatcc
      301 cattttctgt gtaatttcat ggttgtcttc ttgaatgaag atattggctg ctctgaagca
      361 ggaggtcaga tgctcctgct ccctttcagt attgttccgg agtatgtttc ctttcagctg
      421 atgaaaagta attcatcatt tacacccttg aattctgcca gcgttttttt gaacaacttt
      481 tctttccccg tggtaccttg ggcccatgaa agagataaat aggttcaata cggcgccggg
      541 ccccggatcc tgggagcagg ttcggccttg gaggccccga gctgcccctt tctcatgatg
      601 gagtttgtca cctttctacc tcgggaagtc aaatcctgtc gactcagcca tctctcagcc
      661 tctctgaagt ggctttggca cccactgggg catg
//
LOCUS       KCLJ01001004             601 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 112659cal ultra-conserved element locus
            uce-377, sequence.
ACCESSION   KCLJ01001004
VERSION     KCLJ01001004.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 601)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 601)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..601
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="112659cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>601
                     /note="ultra-conserved element locus uce-377"
BASE COUNT          194 a          113 c           90 g          204 t
ORIGIN      
        1 ctttatagtt aacagatagc ctacacattc ctttcagtac atgggctctg cactgattag
       61 gaatgctcca aatgcttaat ttatagcggc tgtatatgta agggttttag atgctaggat
      121 aaatcaccac tttcctaatt ttaaatctgt atttaatgta tatgatacat ttaaataatt
      181 attaaactgg ctgatgctta aacgggattc caattccaca tctgatattg ctctgctttt
      241 caagctgctg taataaaacc attcttttta tagcatgcca ttattagaaa ccaatttcag
      301 aattatttat aacctggaat ggcttattaa gcagcaatgc gagaatcatg caaattacgc
      361 gatcaaatgc aatataataa gcataatcat tagtctctag cacggattaa ttaactttca
      421 atattttatt tacataaaaa ctaaatcagt gaaataactt ctgcacagtc aggcttgcct
      481 tccaatattt tatatgaaca aaaataatgt gctgtaattc cattgaccgt gtcccccaca
      541 atggtcccgt cacctgccac atcttaatag gggacaagct gagagtattt tctagttttc
      601 t
//
LOCUS       KCLJ01001005             738 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 112766cal ultra-conserved element locus
            uce-1858, sequence.
ACCESSION   KCLJ01001005
VERSION     KCLJ01001005.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 738)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 738)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..738
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="112766cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>738
                     /note="ultra-conserved element locus uce-1858"
BASE COUNT          228 a          135 c          152 g          223 t
ORIGIN      
        1 tgcactagat ctgacaagac tgtatgcatt actttatttt gatactgaca tttaaacaat
       61 aaaataaagc catttaaaac aaatagtggt gcttcaagtg tctgagctgt caagatatca
      121 aattatataa cttgaaaaaa tcagaattca ttgttaatgg tatgcactta acacaaaggg
      181 tcgctggagt actaaccaga tatatattca gctaccatgt tggagctaac aggctgtatt
      241 cctttagata gaattgacta tattcactta aatggacttg actccagtac aatcactgta
      301 ttcaaatgtc aaaaaaaaga gaaagaggat gtcacgtagg gtcacaaatt atgttggatt
      361 ttgacagatt gtagccttgc tttacaagag cagtaacatc tcatttgtca ccgtttgatc
      421 tgtaagtgcg ggaatgagag cggaaggccc tccatctcca gcgcaattta atcgctctga
      481 ggccggcggt ggcagctaaa gccacctgcc catgcactgt actgctgatc tgttttaatt
      541 taatcgtccg tcagctggga tgaaagcata aatcgtctcc ctttgatctg caaacggtgt
      601 ggctcttttg taaagcctgg tgcagattca gggagacagt tttcacattt agtgcaaccc
      661 agacaacatg ggcaaaagct tgtaattgat attttgctgt agtagtaagg aagaagttgt
      721 tctttttcta aatttata
//
LOCUS       KCLJ01001006             565 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 112877cal ultra-conserved element locus
            uce-7977, sequence.
ACCESSION   KCLJ01001006
VERSION     KCLJ01001006.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 565)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 565)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..565
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="112877cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>565
                     /note="ultra-conserved element locus uce-7977"
BASE COUNT          210 a          102 c          102 g          151 t
ORIGIN      
        1 cagtaagtta taataaataa actctgatga ctcacaataa tttcatatga aaggtcagca
       61 ttctaatatg tgacactttt gtgatcccta tataatagtc acagataact tttgatttga
      121 tattatgtac caacattaga tgagcagcag atttgtgctt aaaatccctt tccattgtac
      181 ataggtgata acaataagaa tccaaaactg atactatcta ttactctact gaaagcatta
      241 ctatattggc aaagaagctg cagacacaat gcagtggaaa aatgcatatg ccattatgaa
      301 caatgaaagc cctaaaagga ggctagggca aaagtacaat atatatggca gaaggtgaac
      361 aacaagcacc ttgcttcagc tctcaaaaag gcaattctga gcatggcagc tacaactaat
      421 agcacaacag aaaaagggcg ctgtacagat aagatactgc agagccccaa agtaattaca
      481 taatcttttc ccagctagtt attaaagtcc tcgtggaaaa ctgtaagctt ttgtacagtg
      541 aatagtataa agtgccgctg ggata
//
LOCUS       KCLJ01001007             640 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 112985cal ultra-conserved element locus
            uce-119, sequence.
ACCESSION   KCLJ01001007
VERSION     KCLJ01001007.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 640)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 640)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..640
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="112985cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>640
                     /note="ultra-conserved element locus uce-119"
BASE COUNT          178 a          134 c           96 g          232 t
ORIGIN      
        1 agagttgata ccaattcaag gaaagtaaat tggcacagtt cttaaatgca ttaaaccctt
       61 tgctttgtta tgactccttc aggaagcacc tcaagatgta ctccatatcc atagacatat
      121 atatgtacag tagtttcaat aatccactaa tatttagact tagcatgcct attagcttta
      181 cagaaatact tctttcctgt tacatataag cttttctctc agttgttcta aacttactaa
      241 gaattctctg ctctaacaat agtaaaatgt ctgtatgtca ctggttctgt taattctaat
      301 gattggtcct aggctgttcc tccccttcct ttaggaatgg taccttccag tctctccatg
      361 tgcatgaaaa gtgacaagca tgggtcccca tatttctact tattgggcca ccctaaagac
      421 acggtttgta aactctgcat gtatattttt gtttctcaca actgtttaga gagtattttc
      481 cagctacatg ctagcttcaa cttttctttc ataactgatt atctaagaca tcacagcagc
      541 tatgcattct gcaaatgtat tttttgcatg ttatactgct gctagtgtat atttccactc
      601 atgacaaaaa tttatcttct gaatatgcct tttcaggtag
//
LOCUS       KCLJ01001008             569 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 113097cal ultra-conserved element locus
            uce-4775, sequence.
ACCESSION   KCLJ01001008
VERSION     KCLJ01001008.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 569)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 569)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..569
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="113097cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>569
                     /note="ultra-conserved element locus uce-4775"
BASE COUNT          189 a          119 c           88 g          173 t
ORIGIN      
        1 ccaactcctt gcatcccttc aacccaaaat ttccattaca cttcaaccaa cttgtgcacg
       61 ggcaagcaga aaacagccta acagacctcc caagccatag atatttagcc taacttgatc
      121 tcctgtaatg atcagggttt cttaagaact atgatttaga tgttagaaga attaatgatt
      181 tataaatttt ctacacaatg tgccccaaca cctctatctc caattgacac agaacatagt
      241 tatacatacc acagtttggt ggttaacttg aatcacttca tccccagcat ggattttctt
      301 gcaccgatct gcaggtgact gaatttaaaa taaaagagat gatcaagaat acaggtctta
      361 ccggtcatca tctctctttc agcagtatga ttgctaagct atgtaaatca ggttagattg
      421 ataagacatt ctactgtgaa ataaagaaat atttaataaa tcagtttgtt cttgcgaaat
      481 gatatgcact attctacaca ataaaatgtt aagaaaggta ttgagtccta aggatttctc
      541 tgaatttcac cctgccaaaa ggatgcttt
//
LOCUS       KCLJ01001009             666 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 113205cal ultra-conserved element locus
            uce-1093, sequence.
ACCESSION   KCLJ01001009
VERSION     KCLJ01001009.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 666)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 666)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..666
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="113205cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>666
                     /note="ultra-conserved element locus uce-1093"
BASE COUNT          231 a          137 c          127 g          171 t
ORIGIN      
        1 aacagaacat ccgtattatc atttgaaggg aggggatgga ctggcaaggg aaagcttccc
       61 taatcaatac agctgtagga atcagcctct taaaaaaata ctttaaaaat tctgcctctc
      121 accatagcaa ttacttcagt tgctttcctt gcctttagtt aaaaatttat atatgcaaat
      181 atacatctac atatagataa tcacacacat acatatgatc agactttaca cgctgcggaa
      241 gacaaaataa ctttggaggc gtaaatctta atgtcaatga caggaaggct ttggtgaacc
      301 attaccataa atctgacaaa cgctaatttg atgggtggct gtatctgtct gctgcaagac
      361 cagtctagac agtctattga gaaatcctaa aacacaactg tttgttccct gtaacaccat
      421 ctggatatgg caataagagc cgacccagtg ccattcacac atggatcaaa gcacatgcta
      481 atgccatcat gaagtcatac acataaaaaa ttcaatctga gaactctatg caattttcct
      541 aagtcctcag tgaagaaacc tcagacttag cacaactcaa gctaagtgca tgaagagggg
      601 gagagggtgg aaaaaaagaa gagaatattt aatgagcttg gccttcccga ggaatgttag
      661 gccacc
//
LOCUS       KCLJ01001010             561 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 113313cal ultra-conserved element locus
            uce-1808, sequence.
ACCESSION   KCLJ01001010
VERSION     KCLJ01001010.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 561)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 561)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..561
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="113313cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>561
                     /note="ultra-conserved element locus uce-1808"
BASE COUNT          188 a          102 c          106 g          165 t
ORIGIN      
        1 atacatacca aataaaatga aatgctactc atgaatacca tatacagaaa catggaacaa
       61 ttgattattt taaaaaggtg gtaaattaaa atgtattctt attttaaact cactcacttg
      121 tgaccaatct catgtgcaat ggtaaaagct gaacctaggc caatatcttc attaatgctg
      181 cagctccttt caggctcaca cattccagcc acagaggcca agcctgaata aacagaagga
      241 gacacaaagg gtcatgccaa ggtgtttcag tcttaaaagc cctagttata aatgcctgga
      301 ttctttttaa taacttctat gcacagaagg agcagttggc aaaaggttaa ctttctagtc
      361 atttgcaaaa tcactggggg gaatttcact ttgccggcta gacattaata ttttttgaac
      421 tgcagtcagt gctggaaaat gtctagacta ggggttagat ttataaattt tacttctggt
      481 aacttgggac cacctagtaa cttgagccag gagagggaat tcaagaaagt atttctattt
      541 taacattctt ggcctgaaga a
//
LOCUS       KCLJ01001011             782 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 113418cal ultra-conserved element locus
            uce-7399, sequence.
ACCESSION   KCLJ01001011
VERSION     KCLJ01001011.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 782)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 782)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..782
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="113418cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>782
                     /note="ultra-conserved element locus uce-7399"
BASE COUNT          194 a          145 c          172 g          271 t
ORIGIN      
        1 agtcagggta ggttgggcag gaaaacggga atgaggaagg taaataactg cagcaaaaac
       61 aggttctgag gaatacacat aattttgtct gctttagatc acaatagaat ttttaataaa
      121 taaatttctt tttctttgta aattttgaaa cagtagattt agcccagtca tttgtgtcat
      181 tttttttata aaccatcttt tgttgtcccc ccaccccacc ccttataaat gttttagatt
      241 tgagtctctt gaacattgtc tttcgagttc attcggatca ataacggttc atgcactgaa
      301 ctgtgtattg aatttattgt gttaactgtt gttgtgtggt tgaaaggaga tttataagag
      361 ttatagtgat ttaagtgctc atgctctatt gctggcatgg gcaaatgact ctctatgggt
      421 gtgtcacctg taagctcatc atccacatta atgatctcta cagtccgtgt tggagcatga
      481 tggctctgcc ggtgatgctg tttcctcatt ttgtagaaaa ttaccagcat cacagcagcc
      541 atgagagtga tagccacaaa acaaccaatt atgattttgg tagtcttcat aacctcatct
      601 attcctggga tcccgttgtt tgcgtccgtc acaggaatgg tgaacgtttt ttctgttgat
      661 cttgtgctct gtggagtgag tgaggttgtc atgttaatgg tttcccagtt ggtaactggt
      721 gtgggtccaa cctgctctgt ggtctgtgcc tcatcctgag aaggttccac agtctctacc
      781 gt
//
LOCUS       KCLJ01001012             530 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 113528cal ultra-conserved element locus
            uce-3479, sequence.
ACCESSION   KCLJ01001012
VERSION     KCLJ01001012.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 530)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 530)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..530
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="113528cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>530
                     /note="ultra-conserved element locus uce-3479"
BASE COUNT          163 a           95 c          124 g          148 t
ORIGIN      
        1 tttcaaatca tattttagtc atggtcagag ctctgtgact ggtctttcta tttcctcatc
       61 tcagaaggtg tccactaagg attcccactt aaattgagca gcagaggaca gtgcagactg
      121 aatacaaaga gaagtggaac aaggttagcg aagtgtgcag ttggtgagat tgatgttgat
      181 acccttcact gccaagtgaa atgccaataa tgcttgtata gcattttgtg agggcaatgg
      241 gagtattgat tcctgagcaa taataaagaa tgaagctgct ctctcaggta taaaaatatt
      301 ggcaactgtt acaaagaatt gactcataga ggcctgagtg ttggcctatc ttaatacaaa
      361 taattcaggc ttcagaagga tttcaagagc agccaggcat ggtcctcagg cacattctct
      421 gctattaatt tatctgcagc tttcacaagt gtccagcaat tgggtacaga gacaaaaatg
      481 gatttctgaa ggcttgttgg gagacaatat gaaaagccag ctgagccatg
//
LOCUS       KCLJ01001013             481 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 113640cal ultra-conserved element locus
            uce-7649, sequence.
ACCESSION   KCLJ01001013
VERSION     KCLJ01001013.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 481)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 481)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..481
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="113640cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>481
                     /note="ultra-conserved element locus uce-7649"
BASE COUNT          127 a          122 c          102 g          130 t
ORIGIN      
        1 ttcctcacgt agccctgccc accctcccag aaattgtccc ttccctctga agccctctcc
       61 tgcagcagtg cgaggtcagg cacacaaagg tgctgtcccc tgattgcagc aaacaccgcc
      121 atgtgttgta tgtttgatga attaaaagga tgctgccaac ttaattacac tgtaaccctt
      181 caataaagga agggcagagc tgattaacta gtgaataatt gggggctgat tgatggcttt
      241 ctccctcact gctaaaggct gtatatataa ttattttgcc tgtgggccta attttgccac
      301 tgttagcttc cacttttgtc atcagctgta atttatggat ggggcctgaa gccttaaaaa
      361 gggctggaaa atgaaatagc cccaaatccc cagatatgtc acctggaaat ggccagcagg
      421 cagcctttaa catcaacatt tgcagccatt tagcagcatt aacacctcat gcttagccgg
      481 a
//
LOCUS       KCLJ01001014             721 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 113749cal ultra-conserved element locus
            uce-6569, sequence.
ACCESSION   KCLJ01001014
VERSION     KCLJ01001014.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 721)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 721)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..721
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="113749cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>721
                     /note="ultra-conserved element locus uce-6569"
BASE COUNT          227 a          146 c          119 g          229 t
ORIGIN      
        1 agatgtagtt tacatcacta tcattattaa gcgtgtgtct ttgtatgatc cacagcacac
       61 ttactgcagg aaccaggaat aataaacaca ggggtggggg tctttgcatg gaaccttagc
      121 aatgatgaca tgaattcagc tttccttgat aaaaactgat tttccatgca cacacgttta
      181 tcaacagtga ctagtcaccc cttcctctgg cagcagtaat tacgagtggt ctttcatctt
      241 ctttaacaag ctctgcttcg cacgcaaagt ctcagtgacc tcctcaaggt gtgagtcgtt
      301 tatcagggcc cattcagcag cagcagtctc tttccagtac agtccttggt atggctaaat
      361 tccattgtcc ctttttcagc agtcaaaaat ccatgataaa ttctgtacaa cactgtagtt
      421 aatataacag cagcaccaga tattatatta attcatttgc taaaagctgt ttgcaattat
      481 ctctctattg acaatattta aaagtaaatc aatgtacatc tctaaatatc agaaatgtat
      541 actttgataa ctacattatt gtacaagaat tctgacatgc aggtcatgct attgggcttg
      601 gcaagaacat gttacatggt caacaataaa tttaatttct tttcctaaca aaaaagtaaa
      661 acatgacagt cagatattat tcaacaattt caaggatcac ttaagatttc agtcattatg
      721 g
//
LOCUS       KCLJ01001015             400 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 113858cal ultra-conserved element locus
            uce-2313, sequence.
ACCESSION   KCLJ01001015
VERSION     KCLJ01001015.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 400)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 400)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..400
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="113858cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>400
                     /note="ultra-conserved element locus uce-2313"
BASE COUNT          146 a           81 c           53 g          120 t
ORIGIN      
        1 ttcctgtttt gaagctaaat ttgacaatat ctaaagaaca gtagctataa atcttacagc
       61 taccaattaa accacaatgc ctttatgaaa atttttttct gttctcttat ttattgacag
      121 attttttttt aattacaaca caatgaaacg atggtaagta cataagatgc aatagtataa
      181 aaagttttaa cccttccctt ggttaagaca cttacagcag acaagaactg ccccacccca
      241 attccccctt tctcaaatga aaacaaaaaa taaatataaa ttaataaata taaaacaaat
      301 cactgcacag cccttaactc tttgattgcc atggcaagaa ccacaatgat gattctaccg
      361 tgtgacgttc gatggttaaa ggttgccgca gcagtcaaag
//
LOCUS       KCLJ01001016             871 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 113965cal ultra-conserved element locus
            uce-342, sequence.
ACCESSION   KCLJ01001016
VERSION     KCLJ01001016.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 871)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 871)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..871
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="113965cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>871
                     /note="ultra-conserved element locus uce-342"
BASE COUNT          322 a          169 c          131 g          249 t
ORIGIN      
        1 tttccgaagt tttgaaggtg aaacagaaaa atgaaactga aataacttat aatgcactat
       61 ttaagtgcat taatgaggat taaacttaaa gaatagagga aaagacgcac gtatgcgcac
      121 ttacacacat gacacgagcc atacctacaa aagacttcct cccatggcta caccattgct
      181 ttgcaaacaa caagctaatt tgggttccta tcatgcatct gatcggtcat acagcaatac
      241 aaaacagaaa taagtaaaga cgaccatctg cttgttagct gaaactataa aagtacatct
      301 ttttaataaa caataaaatt agtttgacag ggcagagacc acctgaatag aaaatcaaat
      361 atttcatgtt atttaaggtg tatgtctgct ggctattaaa atactcctct ttaatttatt
      421 acagcaacac acacaatact catgtcatcc tcattttcta aatcaataat cagcacagca
      481 tgcttcatta acagtgacca atcacgaatg agctggggat ctcattttac aacatgagca
      541 ttcctaagac ataaaccatc tgctacttgt agtaacagaa aaatcaaatt aatccattct
      601 tatcatgcat tcagatttta aagcaattaa agatgctctt agtgtaatcg cagccacaga
      661 agtagttctg taatgaggaa agcaaactct tcactgaact ttctgtcatt ctcaatacat
      721 ttgaaaactt tacaagcttt ctgcactcca gtgggccatt gttctctgaa cacagatgtt
      781 gaaaacaaca agcaattttt attaaacatt taatctttgc acatttgaag gagtttaaat
      841 actgaacagt gatcaaaaaa gggcataaaa c
//
LOCUS       KCLJ01001017             522 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 114077cal ultra-conserved element locus
            uce-7107, sequence.
ACCESSION   KCLJ01001017
VERSION     KCLJ01001017.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 522)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 522)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..522
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="114077cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>522
                     /note="ultra-conserved element locus uce-7107"
BASE COUNT          153 a          110 c           92 g          167 t
ORIGIN      
        1 cacagagtga gcggcataat ttaaaaatca aagaaattca tttcagtagt aaaaggttaa
       61 cagcctttag gaggaacact ttttaatcac ccacgtctag actctatcac tcgaatcacc
      121 ggcagcagga gtgaaatatg gctaagcccc catcaccaaa cagcacctaa agactgttgt
      181 atttaatcat gtctgtgcac tagttatgga ttttcattat gattcccgat gctgttgcgc
      241 tgtgtaaaat attaatatcc atagtaatga tgcatgaagc ttggagtgta atttcttcac
      301 tctccttgtc tgatattaaa ttgttaccac tttatcattt gtgtagaact gcacgtttca
      361 attaatcttt ccgtatcagc agccctgatt aatatagatc atgattcata agcttatcgt
      421 cactatagtt ttaacagatc atttataaag atcttaaatt tcagggcctg ggaggcgcag
      481 ccactccgtc caaggctttt ctcacttctt gctccagcag gt
//
LOCUS       KCLJ01001018             534 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 114188cal ultra-conserved element locus
            uce-5834, sequence.
ACCESSION   KCLJ01001018
VERSION     KCLJ01001018.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 534)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 534)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..534
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="114188cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>534
                     /note="ultra-conserved element locus uce-5834"
BASE COUNT          150 a          112 c          105 g          167 t
ORIGIN      
        1 ttttattgcc ttgttttcct gtaaagtcaa caagttaaac aacaagattt aaaagagata
       61 acacatcctc ctcctgcttc ctggtctcct ggaggtgctc cagctcaact tattggcctt
      121 ttgcaggtga tttatagaac ccaatggtta ttgtatggct aatgattcat ggagcttcat
      181 taaataccaa gtatgtgcct gcttactgtc tgtgcacact gcatattaga acctttgcac
      241 tttgcaaatt gcccccatta aattcgcaga caaaaggtcc tctcagtagc ttacatattt
      301 tcccacatgt gagagagcaa ttggaaactt cctcttgata actttttgaa ttagaattta
      361 tgagaagggt cttttggtct cgttgcctaa gggctgaaac agatcccagt gtgtacaagc
      421 gttcctttga tgcgtggagc tgcacagggt aacatttttt aacaggatca aaaagcctaa
      481 tgcagggaca atatgtctct gacacaagga gtttttccaa ggctaatcca aaag
//
LOCUS       KCLJ01001019             504 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 114295cal ultra-conserved element locus
            uce-7513, sequence.
ACCESSION   KCLJ01001019
VERSION     KCLJ01001019.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 504)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 504)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..504
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="114295cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>504
                     /note="ultra-conserved element locus uce-7513"
BASE COUNT          156 a          102 c           88 g          158 t
ORIGIN      
        1 tttcataagt agcatattcc taccttagtg gtttcccaca tcttgagaca gctcttagac
       61 aaggatgcat aaaattagct agtacaagca ctttacttgt tcactggaca tcaggcagat
      121 gtggggataa aactgtcaag tctgaaaaca caaagagaaa tattgctatt ttctattatt
      181 cacattcttc ccatgagctg tttgctcagt tgccatggca taggcggtga gattttataa
      241 tttttcccct gtctgccatg tgctcataca acaatgtgaa tttaatcagt ccagacagtt
      301 ggttgtgttt tgtccatgtg agtggaataa aacttttctc accagctaaa cccacaaagt
      361 atctaaaagc cataaataat cagtaactcc tatgacttgc acctgcttgc tttatttgac
      421 caaggataca gaaaggctca tataatgaac agtgttccca agcattaatc acctctgatt
      481 gcttataaaa atcaaagtag atgt
//
LOCUS       KCLJ01001020             719 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 114404cal ultra-conserved element locus
            uce-2553, sequence.
ACCESSION   KCLJ01001020
VERSION     KCLJ01001020.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 719)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 719)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..719
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="114404cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>719
                     /note="ultra-conserved element locus uce-2553"
BASE COUNT          237 a          122 c          155 g          205 t
ORIGIN      
        1 cttccacaac attttgtgct tacaaatata ttagcaaatt caaaatctac ccaaatattt
       61 gctataaaca cgggctcatt cctgctccta tctatttctc acccatatgc atgcagataa
      121 atgtgtacac atataccgca tatgtactca ttccctaggt aatcagagac acagataaaa
      181 taaagcttct agagtgacag acattctgca gacagggttg ttagtttatg ttggctatag
      241 gcagagtgga ctggaaaatt ttgatcactt taatttacta tatccagcat gcctgctgta
      301 ctcgtccagc acttttatca agccctgtga ggtggtattg atttttttat tttctatgta
      361 ggataagaag acagagagtt aggagcaaga gtgaatgaag aactttcctc agattactgc
      421 tattctctag cttattgcat cctgtcgttt gtagtttcag atgatgtcca gtatgtcagg
      481 gttgcttgaa gcaataaaca gggtgaataa caatggaaag gctagatgag aaagattgaa
      541 aaaggagaaa gaggcagcaa agaaagtaag aaagtgaatg tgagaaatag gagcagaggt
      601 tgagaaaaag tgtcctaggt gtagagagct tgataagtgc attcctttaa agaaactgta
      661 accagccatg gcagtttttc gaccaagagc tgcacataaa accagaattg tgaaggact
//
LOCUS       KCLJ01001021             586 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 114514cal ultra-conserved element locus
            uce-4339, sequence.
ACCESSION   KCLJ01001021
VERSION     KCLJ01001021.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 586)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 586)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..586
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="114514cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>586
                     /note="ultra-conserved element locus uce-4339"
BASE COUNT          173 a          117 c           98 g          198 t
ORIGIN      
        1 tttgtcagga aacatctaat tataagcaac aatactcaca ctgccctgtt actggcctga
       61 ggcatgtgag aaaaaaaaat tctaacagct atgtctcacc tttatgggcg tacaccaaag
      121 aggaacggaa actacatagc acataatttt gcatttttat tataaggttg aaactaaaca
      181 ctagaaaatc ttgtcagtgc ctgctaagct gattccaatt aaagcttctg gcagagttcc
      241 agctgtttta ctacctcaaa tagcactgaa cataacaagg tttatgaagc attcaaaagt
      301 caaataccct attaacataa acatgtagtg aaatcaactc ttctacgatt ttcagcttgc
      361 tttctttctt tcatttaggt tggactaatc taagatgatg tctgttttct ttgtggcgtc
      421 gttttttctg cttgctggaa tgcaaaacaa gattttgtat ttgaacggtg cctgatttgc
      481 ttgagaactt actccctttg caattttatt acaacgcttt cgatcccact gtatttctta
      541 gcagtatgct gaaggtttgt tccctgctct gcttttaact acaaaa
//
LOCUS       KCLJ01001022             826 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 114626cal ultra-conserved element locus
            uce-1598, sequence.
ACCESSION   KCLJ01001022
VERSION     KCLJ01001022.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 826)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 826)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..826
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="114626cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>826
                     /note="ultra-conserved element locus uce-1598"
BASE COUNT          231 a          159 c          173 g          263 t
ORIGIN      
        1 ataagggaag agaggctttt tcgaagtcat tttcagggat ggttaaaaca gcagacaggc
       61 agtaggattg caataaataa taaactgtgg gccacaacag ttagctcacg gaaaatataa
      121 aatacagttc tcaagcaagt aacgggggag ggggggggga gagaaagttc ctgtgcactt
      181 tgttcaaggt tctgcacctc tctaagcagc tgtcacatcc gtacattatg gtacattgaa
      241 tctgaatgag gctctccaca tcaaaacctt gcatccatta tgatatcatc tcctgctcta
      301 agctgtaatg cttattaatt ctgcacccat actctccaag cttcagcaaa tgtattccat
      361 cagcctagca tttaatttaa ttagtacagc tgggctctca ttctcctttc tgtgtcagag
      421 gtattgtcag cacgttctgc tataacacaa ttactgattg cttttagata ggcagaaata
      481 tgattagggt attgggtgac tgtatcataa gccttattag attcatttga aatctggaga
      541 taaataggaa acttttattt gcagtgtaat gagattatgc ttattaggcc aaggcctcac
      601 aaccttttgc aaagaacata gtgtatcact aggattatac tctggaacca cactttttgc
      661 ttatagcatc caagctattt ctcagcagct ttgagattta actgttgtag ccctgtacac
      721 attttagaat tgttttctgg ttcagtggct ttctgctttg tgtgtggacc ttccaccgtg
      781 tgttttcttc tgcttaaacc ggaggatgtt ttgctcgaaa gaggaa
//
LOCUS       KCLJ01001023             790 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 114737cal ultra-conserved element locus
            uce-7352, sequence.
ACCESSION   KCLJ01001023
VERSION     KCLJ01001023.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 790)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 790)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..790
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="114737cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>790
                     /note="ultra-conserved element locus uce-7352"
BASE COUNT          243 a          165 c          135 g          247 t
ORIGIN      
        1 caaatttgtc cctgactgtt ctgctctcga tggaagctga caggtcatca ttcaccttat
       61 gatgtcgttt caaccccatt atcttttcca ccttgtttta gcacctctct ctggcaaagg
      121 tagtgagtaa gatgttgaag aactgaggtg gtatttcagg ctatctgcca gcaagtgctg
      181 aataataatg gaatttgttt gcttacaaat tgagcaattg aatttagaca ttgagggggt
      241 cacctctgtg atttgtccca tccccagatg gtcaaaaagg cagaattaca gggtcagtcg
      301 tggaaccctt ttgtggtagc acaacatacc aaccatacaa ccactaggcc atcccccaca
      361 gttacaagta tttcaaggtc aatttatcaa tttaacagct tcatcttctt aatcactaaa
      421 cttctgtctc tttgagcttg tgctgaaaga ctgtggctgc taattaaaat ggagctttac
      481 tagcaagtac acaaattaga tcctgtcagt aagtttattc taactattgg tcatttctaa
      541 atgccttttt aatcccctaa tttttacatt aaaattcaaa agcctaacaa tcttaatcac
      601 ccctacatca aattcatcat taagaacagg aagccagatg gtataatttt gatttaccgg
      661 acttcagcgt gaattaatgt actgagtgcc gataatgaat acatcaaacc tgatattgca
      721 gaaacctatg aatctggcat gttaaattaa taacacactt tgcacaatga aagcatgtaa
      781 gctcatataa
//
LOCUS       KCLJ01001024             617 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 114847cal ultra-conserved element locus
            uce-7032, sequence.
ACCESSION   KCLJ01001024
VERSION     KCLJ01001024.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 617)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 617)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..617
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="114847cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>617
                     /note="ultra-conserved element locus uce-7032"
BASE COUNT          153 a          125 c          138 g          201 t
ORIGIN      
        1 acctggcagg tgtttccagt gagcagctca caccagggtg ctgacttctt actatctcag
       61 tgccttgaga agttgttgaa aggattacaa ggtgccttca tttttcatac gcctgccagc
      121 gaaatattgt gcctaacctc acatttgggc atcgcccatt ctgcagtgca tgtctagtgt
      181 ttatttcagt atctgtcaga gacccagggt taaaactatt ggaggtccag atgacatctg
      241 gcttctcagc tcctccagaa tattggctgc agtgtttatc agtgcattat tcatcaaaac
      301 tgatgatgca aagtacaaca tgctgtctgc agctcagcgt aagagtggaa agaagttggc
      361 agaaatgcct agtgttctgt gagcagcatg taatcaatag tctgggtgct tgttcacttt
      421 atgttgatga ctattccctc tggtacgtct ttgtatattt ttgggttctc tgtattacca
      481 gctgtgcgat ttttctctct cttttcttga taccagcttt gatagaacag aaggggcaac
      541 cttttgtgca gtagatgtca aatcaaataa actatttgca caaagcctgg aaatgagagt
      601 catttagttg agatttt
//
LOCUS       KCLJ01001025             539 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 114956cal ultra-conserved element locus
            uce-913, sequence.
ACCESSION   KCLJ01001025
VERSION     KCLJ01001025.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 539)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 539)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..539
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="114956cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>539
                     /note="ultra-conserved element locus uce-913"
BASE COUNT          152 a          110 c           97 g          180 t
ORIGIN      
        1 tgttagccta acccaaaatg tgttcactgg atttgaagag agaactccca ttttaccttc
       61 acaatggtgc tggaatggtt gaataaagtg ttgccctgct gcccatatgc cattcagctt
      121 ctgtctgtct ttttgtttac actgggaata caataggaac tatagtcctt ccaatgcatc
      181 atttataagt gtattctacc tctgaatgta cagacagaac tggctctgtg aatgagctct
      241 gtgaatattg ccaagacact gtgctttgtt cagcattatt cttcacaata gataccacac
      301 tttggaagta attttaaaaa gggaatcaaa atagtggtac ttttagcctt tgtttctttt
      361 ataccacact gcattctctg tctctcactc agctgcttct attatactga caaattaaat
      421 aaaccactcc attgctaaag aggcttgggc gggctgggct tcggtacact gctgcatgag
      481 gaagtcgaaa taaacattta taccagtttt attcttaaca aatttaagct aactttagt
//
LOCUS       KCLJ01001026             608 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 115065cal ultra-conserved element locus
            uce-7833, sequence.
ACCESSION   KCLJ01001026
VERSION     KCLJ01001026.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 608)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 608)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..608
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="115065cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>608
                     /note="ultra-conserved element locus uce-7833"
BASE COUNT          188 a          106 c          138 g          176 t
ORIGIN      
        1 ttaactggtc ctgtggtaag cattacagta caggcattgc taattattta tttcctgctg
       61 ttaagcagaa aacaggcttg actgccctga caacagctgc agcattacaa tgtgtgaagc
      121 actgtgaact ttatgtgcta gctgtcctgg agagctctgg gggcaatggg tattacaagc
      181 aggtagactt gttgtcagaa gagccttccg aggagtccta gtgcatcagc agcaattaat
      241 gcaggtggta ttttagacaa gggagctaat gagctttaat atgcatgcag gtgagggagt
      301 gctgaatcag tagagccatt aatgaaccta tgacagccta attagctaca atttaaaatc
      361 tatggaatct aatcagaaga gctgaacact gctgcaaatc tgtgtatgaa tgagtctttc
      421 taaatactcc aatctgttgc ttagtcactg attgatagta attgccctcc attgtgtata
      481 ggaaaatgcc caattttgtt ctgatagagg aggacacaac gttgaagtta aatgcctgag
      541 atatttgact gcttaagttt taatcaggag aaaaaaaatc aaagtaaaat taatttccag
      601 ccctgaat
//
LOCUS       KCLJ01001027             406 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 115178cal ultra-conserved element locus
            uce-7661, sequence.
ACCESSION   KCLJ01001027
VERSION     KCLJ01001027.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 406)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 406)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..406
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="115178cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>406
                     /note="ultra-conserved element locus uce-7661"
BASE COUNT          112 a           82 c           92 g          120 t
ORIGIN      
        1 ggggtcagac accaatgatc atatctcatt ttctggacac aaaccctcca ctgatgtcag
       61 ggtaaggaac cacaagcaag ggttagttca gaggtgtacc cacagacaaa agctgaggta
      121 ggtaacccac tgggcacagc tgattggctt tagtaggtgt tgattacact gctcatattg
      181 catgaaatta aaaagcttac aaatgttatg agccattacc cttccattta ggagatctta
      241 tgacaagtta gcaagatcta atgaaatccc ctttaaaatg ccataggcac gagattttgc
      301 tttgaaatgc aacttgtggg gttatttctg caagtttgcc tttcctgcac atctttggga
      361 tgctctgatt tggaagctgg tgggatattt cagttccctg ttgtgc
//
LOCUS       KCLJ01001028             464 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 115283cal ultra-conserved element locus
            uce-3610, sequence.
ACCESSION   KCLJ01001028
VERSION     KCLJ01001028.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 464)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 464)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..464
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="115283cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>464
                     /note="ultra-conserved element locus uce-3610"
BASE COUNT          117 a          133 c          111 g          103 t
ORIGIN      
        1 aattagacct caggtccctc ctcttttttc cattcactgc tttcgacaac tgggcaaata
       61 tcactcccca aagtcccccg gggctttatt tgtgaggttt gtggctcggc agccccgctc
      121 ccctccccca gcagcgcact acaaagcgtg ttgtacaggg actccattaa tcctacattt
      181 cctagatggt atctgaggca cagtgggttt ccacagaaat taatttgtcc tgacaacagg
      241 cctaaagatt ggagtccagg gatcacttgg caaattccct ttaaactgag cacaataata
      301 aacagaaagc tgataacgac agttctgaaa gaccacacag aggccggagc ccgagccgag
      361 cgctcgccgc ggatccgcgg atgccgggag ccggcagctc gaacgcctga taggaaaatg
      421 agctgattta tgcacaccca gcactgggag ggcttgctcc agct
//
LOCUS       KCLJ01001029             323 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 115391cal ultra-conserved element locus
            uce-3859, sequence.
ACCESSION   KCLJ01001029
VERSION     KCLJ01001029.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 323)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 323)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..323
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="115391cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>323
                     /note="ultra-conserved element locus uce-3859"
BASE COUNT           83 a           89 c           87 g           64 t
ORIGIN      
        1 agaccagcag gacggagcta ctggtgggat ggagctgcgc cacattttga caatctgacc
       61 caaactcatt ttgtggtgct acgctgctgc tgaaaacctc agaaacttac catctaagag
      121 ctccagagtt acagtgccat caacgtattc ccaccagtgc ttcccgtccg tggagactgg
      181 gatctcccag ttggaccact tacaggccag gtggatacag acgcaggcca caacgggagg
      241 ggtgtactgc aggctgaagg tggtcaggtg caggctgaca aacaaaaatc catcaactcc
      301 tgagctgcag ggcagctcca tcc
//
LOCUS       KCLJ01001030             758 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 115490cal ultra-conserved element locus
            uce-1776, sequence.
ACCESSION   KCLJ01001030
VERSION     KCLJ01001030.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 758)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 758)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..758
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="115490cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>758
                     /note="ultra-conserved element locus uce-1776"
BASE COUNT          214 a          160 c          155 g          229 t
ORIGIN      
        1 gaagctgtgc cctgatttct gctgcctttc ttcccctgtg caagcaggga ctccatctcc
       61 ctgctgctgg agcacacctt catcgccttc cccccataat taaggctgac ttatcttatg
      121 tgggccattc acctcttatt tagcctgcta aaagagctga gaggtttaca ggaaggaagc
      181 agttaaatga taaaaatgtg aaatgttatg cagcaagctg tgtacaatta actggaattc
      241 aaatatacac cttgttccaa tccaagccat ttatgagata aaaatagtct gctagaagaa
      301 tgtcatgatt aatgaggtga gactccagct aattactgtt tcctccagaa gtaattaggt
      361 tggcattgct aatcaagatg aacgaacact ctgacccgct tttttaaatg taaaactatg
      421 agctgcagca gcaataacat catttagttc aggcaatgta gtctttatta ggcttgtagt
      481 ttgattaaat tcttttgtta taccaggctt tccacacatg aacagatgaa tgctgtgatg
      541 ttcaaagagt ttgtcaccct taattaaagg ctgaaaaggc ttgttcaatt cacggggcag
      601 cacacaggac agctctaaat tgatagcttt taagtggggg tgagggagtc agagggtttc
      661 ccatctgcaa gaggatccct cctcctccca tagtttcctg tctagctgga aaatcagata
      721 tttgtattga ttccattagg cactctcatt ccatctga
//
LOCUS       KCLJ01001031             516 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 115601cal ultra-conserved element locus
            uce-1570, sequence.
ACCESSION   KCLJ01001031
VERSION     KCLJ01001031.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 516)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 516)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..516
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="115601cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>516
                     /note="ultra-conserved element locus uce-1570"
BASE COUNT          172 a           89 c           80 g          175 t
ORIGIN      
        1 tttttagtag ttgcaatgga ttataaacct tttgtacaga ccttaaatgt caccaatatt
       61 actgaatgca aagttaaaac agctgagaaa tgcctttaga acagcagcag tgaaatttat
      121 atgaatttct gttatatgat aaaatgaatc tattttttta aacaaaggac agccagtctg
      181 agatttacac ctgatttgtg ctatagtaat ctttgaaatt aagaagtgta tccttgcatt
      241 tcattaaatt ctggctaatg agataactgt cttcccaagg agggagtgat gaagtactca
      301 tgccataaag cataaattaa tgctgcaagg ttaaacactg gaactaactc atgtttcaac
      361 aaaagcccct accagcagtt aaattaactg acataaatac cataaaatct gtctttattt
      421 tagtctcaga tgatgcttct ttttacaccc ctgctttcag tttgtataac tcatttttgc
      481 acattattgc atgcatcatt tgccatttaa aggatc
//
LOCUS       KCLJ01001032             474 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 115703cal ultra-conserved element locus
            uce-3499, sequence.
ACCESSION   KCLJ01001032
VERSION     KCLJ01001032.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 474)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 474)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..474
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="115703cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>474
                     /note="ultra-conserved element locus uce-3499"
BASE COUNT          159 a          107 c          114 g           94 t
ORIGIN      
        1 cccgtgccca gagttcattg ggggagggtg aatgaggtgg agcaagctac aaaagtcaca
       61 gggcaggcag gactgaggac tgaacaaaat ggggttctgt gagacatttt tgtcatgcca
      121 gcatggagga catgcagtat tagaaatgca gaattccccc cactcacttg tgatatcata
      181 aacaacaact gcaacagtgg agtcacgaat gtagctagga atcaagctcc tgaaccgctc
      241 ttgacctgct gtgtcccata attgcaaccg tacctaacaa aatcagtcaa acaagcaaga
      301 aaaataagac aaaaggtcaa aaaaatacct acttgtgata tcgtaaacta ctacagcagc
      361 agcagagtca cggatgtaac tgggaatgag gctacggaaa cgttcctgac ccgcagtatc
      421 ccacagctgc aacctgatct gtgggtggga gaataaaaaa gccaaactgc cact
//
LOCUS       KCLJ01001033             875 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 115809cal ultra-conserved element locus
            uce-2147, sequence.
ACCESSION   KCLJ01001033
VERSION     KCLJ01001033.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 875)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 875)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..875
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="115809cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>875
                     /note="ultra-conserved element locus uce-2147"
BASE COUNT          285 a          148 c          174 g          268 t
ORIGIN      
        1 aaaattctaa aaggaaatat actgaggcta catgtcagat gtttctctct tcttttctct
       61 ccctctcttt ttatgcacac aacacccata tgcacatgca catatattaa tatatataat
      121 atatgcagat attgatggaa ttctatgagt tgaaagagag ggaagatgtc tttaaggatc
      181 catatctctc acagcagata tatgttatta tcactgaaat gtggccttca gtcttgaaac
      241 agttaaaaga gttctacggc cacaaaagaa gagatttctt cagaattatc tcccgcctca
      301 catttgctct taggcaagca gtttaaaaaa gcccagtgat tgagccagtg atccaatttg
      361 aaatgcagaa atgattagag ctgcttgcct catttcatat cgaaattctc tgatttatga
      421 cagggctgca gccaagatct atctccaaag ggaattagtg tgcaagtttg catatttttg
      481 ttatttaggt ttctgatagc agctgctagc tagaaatact gaactgggag gtggtggtgc
      541 agggtttttc agccattgga gcaaagaaag ataagagcct tatgtttagg acatttagac
      601 cccttgacca tctcaccata cagtaatttt taaacttgga ttgcagtaat acaggaatcc
      661 agcggaatgg ttaattgtag ttgtggagaa aggaattacc aaaattctgt ctccatgttt
      721 taactagggg aattttaatg aggcataaaa cttcaatcat gcgactgacc tgtggggcag
      781 agtgtagaac atataatgaa acagaaatag aattctgaaa aaaaattatt accttatctg
      841 gaatttacat gaagtgttaa caggaaatta tgcag
//
LOCUS       KCLJ01001034             652 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 115923cal ultra-conserved element locus
            uce-2843, sequence.
ACCESSION   KCLJ01001034
VERSION     KCLJ01001034.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 652)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 652)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..652
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="115923cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>652
                     /note="ultra-conserved element locus uce-2843"
BASE COUNT          192 a          105 c          125 g          230 t
ORIGIN      
        1 tttttcaaac ttgaacttct ttttgtactt ggacttgtat ttccttttga ggtgtaaggc
       61 aagaatgtgt gctttccatg ggctaaacga atcaggctcg aaacttttat ctggatctgt
      121 ggagcttgga tataaattga aaagatcaca gctgtgggga aaagacctat actgtaaagg
      181 cctttctgca tagattatga acatcataac tcaataattt tttttccaaa ctatagttat
      241 aattggaccc aatgggggtc tctctctttg atcagatcac agtaactgtg actttacact
      301 ggaaaatgtc actactgtga aggtttatca cctgtagagc tggtcttttc tctgatgccg
      361 tgttcagttc tcattagcat tattcaaagt ttagttgtta attaggttga cacttcaatt
      421 acaatcatca tctacaagag cagtcaggac tgcttgcata aagaaacaaa aaattcttgc
      481 attatttcca aaatgaaagc tgttttggtg ataagtttgt atttataata ttccttttaa
      541 acagtaactc agaatgttat ttagggactt aaataatgct ctacaaaggg gtgtagaaat
      601 gtgtattctg tgtaagtaaa gttgacttat ttccaggtgt ccctcatgat gg
//
LOCUS       KCLJ01001035             705 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 116031cal ultra-conserved element locus
            uce-627, sequence.
ACCESSION   KCLJ01001035
VERSION     KCLJ01001035.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 705)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 705)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..705
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="116031cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>705
                     /note="ultra-conserved element locus uce-627"
BASE COUNT          210 a          130 c          142 g          223 t
ORIGIN      
        1 tgctctgtta gaaaaacatt gtatttctga ggctgtggtt taatgtatga taactctgtg
       61 tttattgtgt gtcacttttt aaaatttcat ttttatactg atcacacttc acatatgttt
      121 ccaattgcat aattctgtct caaaatggaa gagatgtgat aaatggccat ttatacatct
      181 gtgataaaaa gatagagcaa acagccagta atttacatat ctgctgaaat actgcagcct
      241 ggctttgtca gtgctgctga gtccatttca aggatgtcgc ccttagtcca ttagtttgga
      301 taatgagccc tataaagtac atttataact cgtggcactg caaggagatg gattctaatt
      361 ttcatccttt tatccagaca cattgaaaga aggtcaatgg agggttggct gtgattcatt
      421 gtcgcaacac agatcagatg acagagacct gataatgtca gtgcaggagt gtttgctgca
      481 tgtggaagca ctacttgaaa gaaattttct cagcatcacc ctttgaagta aagtgggaaa
      541 tgaaaagctc tctcgctcag tttaaaatct taccacacat atgacctgct gctattcctg
      601 aacaaaggag aggaaacaac acttagcagg aaaatagtgt tgttgctttc gctggctttg
      661 agtgatgcaa catgacattt aatcaacctt tccccttcca gaatg
//
LOCUS       KCLJ01001036             579 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 116141cal ultra-conserved element locus
            uce-5968, sequence.
ACCESSION   KCLJ01001036
VERSION     KCLJ01001036.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 579)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 579)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..579
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="116141cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>579
                     /note="ultra-conserved element locus uce-5968"
BASE COUNT          205 a          114 c           87 g          173 t
ORIGIN      
        1 agaatttctg ttaaatatat atatctattt aattgagctg ggaaggccaa gtttagaaaa
       61 actgcaagca ttcccaaagc tttaaaatat taacgggtat ttggttaacc agctgtggtg
      121 ttgcaaatct catgtacact caaagcactt cttacaaaca agaactgcag aactaaacta
      181 acctcggtct gcggtcacaa tcctttggta aggatggaca cgcatatcgt gccttcgaac
      241 tttagtagcc accgcaccta gttaaattgc aattaccaag acaaaacatt cacagaaaac
      301 attaacagca ggtttatcaa aatggattta aatgatcatt aactacaaaa gttcaaaaag
      361 caacaagtta aggcacagta gtttcaaatc ttaatcttaa aaagaagttt atctgtgcag
      421 attaatattg catttatttt aaacatcctg gccttaacct gtttaatcca ttcatttaca
      481 atcccaaaat tacagtattt catgaaatct attagaccca agcacattta agctttacta
      541 gtcacatatt cactgaagtg cctttcttgc agcaggact
//
LOCUS       KCLJ01001037             564 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 116252cal ultra-conserved element locus
            uce-4899, sequence.
ACCESSION   KCLJ01001037
VERSION     KCLJ01001037.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 564)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 564)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..564
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="116252cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>564
                     /note="ultra-conserved element locus uce-4899"
BASE COUNT          181 a           85 c          123 g          175 t
ORIGIN      
        1 aagtgagcat gtgctgcatg ggcaccagtg gagctgacaa aggattcctt tagttagagc
       61 tggcatatac tgaattttga actacctttt aaatacttaa attgtcaagc aagcatttgc
      121 aaaggaaggg ttttcagtat ataattcccc aatgtaggtc aattaaagtt ataacacttt
      181 cctaaatttg aatcactaga tcaagtgagt tgtacatttt ccctctgtgc atttatttca
      241 aatgttaata aagttttcat ctacaaaagg cttagaattg acagaacaaa actctttctt
      301 tttaaatgat gacaactact actgtttctg tctgcaggta gtggaggaca tgctagagga
      361 cgaggaagaa gaggatgaca gagatgacaa ggtaattatc tttcctagca cttgggtatc
      421 tggggatggg agaatttaga catgacactg tttttaccga cagttaaaaa agcagttgat
      481 gtgttttagt ccagaaaatt ggacaaagtt gtttatcatc cggtatagca tgttgaggga
      541 aaggttagag gactataaat cctg
//
LOCUS       KCLJ01001038             624 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 116358cal ultra-conserved element locus
            uce-4400, sequence.
ACCESSION   KCLJ01001038
VERSION     KCLJ01001038.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 624)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 624)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..624
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="116358cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>624
                     /note="ultra-conserved element locus uce-4400"
BASE COUNT          196 a           95 c          120 g          213 t
ORIGIN      
        1 aaaaataaag ccaaatatat taaaaatcag attgtactgc tgctgttggt tttctacttt
       61 cagggttatt cattgctagt tagagttgct aattctgtag ctgcttcatt ctgctgtaca
      121 aggaggttaa tctacaatta aacaatattt cctcttggcc ctccattatt ttctgaaaca
      181 gatggttcat catttcctgg gctgttaaac acagcaaggt taaggttaga ctcttgggaa
      241 tcagctagtt tggaatctta ttaggctgta gaaggaaaac taataagaat actccttaat
      301 atcattttgt gactgtaaac aattatttat tagcaaacaa ttgatcccag aagggcaaat
      361 tgtttgagtc agtaatgagc tgagaaaaga cagagcatat ctgtgtattt ggaaaataat
      421 tgtaacgtaa ttgcaatgca tttagacagg catctttttg gacctgtttc tatctttaaa
      481 tgaatttctg aaaacattaa cgaggtttat atgcttttct gacatttaca agttgcttgt
      541 gccaaccggg cactaagaat gatgggtata tagtgtgagt catctctggt ttattctaaa
      601 aataagttac ttagggcaga agac
//
LOCUS       KCLJ01001039             518 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 116468cal ultra-conserved element locus
            uce-3067, sequence.
ACCESSION   KCLJ01001039
VERSION     KCLJ01001039.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 518)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 518)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..518
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="116468cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>518
                     /note="ultra-conserved element locus uce-3067"
BASE COUNT          132 a          118 c          117 g          151 t
ORIGIN      
        1 gccccagtag aaataattgg ccaaagatta gattgaatgg caggggcttt gtgtaccaaa
       61 caggggcttg tctttgtctt tacaaagtat ccggcgccgg gtgtcaggga ggacaagttt
      121 tttaatcatg ttaaaatgat ttatttaaac gtcaagccat gtcacctcac ttcctttcat
      181 ttttcaaact gtttgtgttt tttctggatg ataaatttat cttcagacag cctcaatatg
      241 actaattaac tttgaaatat aagaaccaga tgtgtgagct ggagagcttt ctgaactcat
      301 gccaggctct ctcctctcct actgaaattg ctctgcagac actcagggca catggaaaaa
      361 ccagagggat ggacctctct gccccttcct gccctgccca ggtggtgttt gctggcctgc
      421 agggatgtgg gaacccagct gcctctgctc ctttgccaca tgaaatcaag gctggatgtg
      481 acacaaagtg acttctttga aagaaaaccc tgccgtgt
//
LOCUS       KCLJ01001040             559 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 116573cal ultra-conserved element locus
            uce-866, sequence.
ACCESSION   KCLJ01001040
VERSION     KCLJ01001040.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 559)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 559)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..559
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="116573cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>559
                     /note="ultra-conserved element locus uce-866"
BASE COUNT          160 a          126 c           85 g          188 t
ORIGIN      
        1 cccagcactt cagttgcatg tacacaaaat aaatgttatt aaaaaaagac tgaatgaaaa
       61 ttttcattaa tttttctgcc tatgatctga ttccaagtta aaatatctag aatgctacta
      121 ggtttacata gccgaaagca gaaccacagt ttgttcacag acgttgcttg ctgtctgcaa
      181 tttttttatc cctttacaaa actttgaacc ccatccagct ttgacacact gcctcttcag
      241 ttaataacta tcaagtttcc ccttgtctcc tgtctacttt tctttgaggc aattgcgcac
      301 tcagcacccc gagataataa cacacatcta taagataaaa gcaatggcat taatgtaatt
      361 gtctgccttt ctctctttag cctaatcttt ttttttcttc agttttgact gcctctgtga
      421 cacctgtttt tgtctcctct gatcctacga caggttttcc gctgacaagg ttttgacaga
      481 gattctgcca gacaagaaca taataaaata tgaagaactg cttgtcagag tttctgccaa
      541 tgctcacatg aaatggatg
//
LOCUS       KCLJ01001041             655 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 116685cal ultra-conserved element locus
            uce-2151, sequence.
ACCESSION   KCLJ01001041
VERSION     KCLJ01001041.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 655)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 655)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..655
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="116685cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>655
                     /note="ultra-conserved element locus uce-2151"
BASE COUNT          190 a          139 c          121 g          205 t
ORIGIN      
        1 tactctacct ctaaaaatat ttcagccctt gatgtgtttt gtgtttcacg atacatcatg
       61 tgttttcccg gcgagcagct cgacgtttta atacaattac tgttttgcaa tgtgagccct
      121 tcggatcctg gtacatgcac cacagctgca gatggatttt tttattgact taatactagt
      181 tctaactaga tcccgaagat taagttggtg gagcacatac cactttcaag caggaatggg
      241 aaaaaactag catatcttat tgtacctgaa acactctatg atatgtacta aatattatga
      301 ctactgcgag ccctgcaata attgattcac ccacacagcc atttagtctg tgagctgttc
      361 gttttacaaa ttctacaatc ttttagaaat tctttcagtg aagaagattg ctgcctggcc
      421 tcagattcat tatggtgatt gaatcctctt caatagagaa ctgtttaaag agagcacatc
      481 cctgtgtgtc tcactcagag tgaaggcaca taggttaaaa gcttgtctgg gtggcataat
      541 tcactgctgc tgtgccaaac aatcacatct tattgtgacc ttcataagat acaaaaaggc
      601 aacagtatgg agctagtctt taaccacggc acaattttag ctacccaaca tctga
//
LOCUS       KCLJ01001042             593 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 116794cal ultra-conserved element locus
            uce-1842, sequence.
ACCESSION   KCLJ01001042
VERSION     KCLJ01001042.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 593)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 593)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..593
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="116794cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>593
                     /note="ultra-conserved element locus uce-1842"
BASE COUNT          180 a          126 c           95 g          192 t
ORIGIN      
        1 aactctattt gtgccgatta tcccagacaa tgctgccaaa ggtgtaacac aatttggatt
       61 ttcccctctg cagctttcct gtgtgcagag acacagttac cagtctgtct tcagaaggac
      121 tcctaccatt ctaaaaatac tgtcccacag ctgtttaaaa tttatttttt tagaccatag
      181 caccactgtt tggttgtttc caatttctga aaccacaaat agtaaaagtg tactcagtct
      241 actgcaaaca taaatagcaa atgcacgctt cagcactttt aaaaggatat ggaaattggc
      301 aacaaaaatg cagttcatgt tgaaaattta cgagggccct gccatatttc ttcagaaata
      361 caatcaggta aaaattagga agatctctac cagctgggtg gcatttttgt gttttcttta
      421 cttacaaact gaaagacttt cattatgcaa cttctggcac ttgataaaat agagcatggt
      481 acctttgctc aaaccacagc ttctttggtt atgtttagca ttacacaaac atctttcacc
      541 ttagatatcc tcttgcatta gtgtgtttca tttcaaataa ggcacattac ctt
//
LOCUS       KCLJ01001043            1055 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 116906cal ultra-conserved element locus
            uce-200, sequence.
ACCESSION   KCLJ01001043
VERSION     KCLJ01001043.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 1055)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1055)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1055
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="116906cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>1055
                     /note="ultra-conserved element locus uce-200"
BASE COUNT          309 a          215 c          201 g          330 t
ORIGIN      
        1 aaaagattag ttaaaacatc tctaaccccc actctccctg ctttaaaaaa atgcgattaa
       61 attatgtaca gcgcttaacg ttgtacataa agatgtggcc ccatctcctc ttgttctggt
      121 gctactgtgg gaatttgtta attcagcttt ccaagggcta ttgtgaggat agtcacaatg
      181 tatacatatg ttaaagagaa tatatatatt ttgcacaaaa tccttgcact gtattaaaat
      241 atgtaagcaa attctagtgt taagatattt ccacattatg atttattcca ttatcatttt
      301 ttccatctca gaatgcaatt aatatggttg tgtgttaaat gattcagtga aagtaaatct
      361 tttatattca ggtaagcaat tcagccttgt aaggttttat gggaattaga ttttttgaag
      421 tctgtgttga gcatgcccat aactctgaca gagccctgca ggctcttgtc ttcaccttca
      481 aatcataaga cagagaaatc aagctccctc tgtgctctca attataccaa aaaacacgga
      541 gcagaagtct tcagtaattc aatccctgtg gaagcttctt catactgttt gcactgttgg
      601 aactgctgac agcagcaatc ccagaatccc tcctggtagg ctgtcaaagt tcctcgtgcc
      661 gtgtgagcgg cactgctctg tcccaccgct cctcctccag agacctttaa gcacatgcat
      721 gacttttgat gcttgctcga tacagtggcc aagaggccaa aaaacatcac aaggagagtt
      781 ctcatactct tacaaggtgc tttgtactca aactaatagg atctgtggct acatgtgggc
      841 cagggctggt gtaatttaat cacaagtaca gctgcataaa cactgtacta aggaatgtct
      901 gcctgcaatt ggattctttc tttgaaagtg cactgtagaa aattcctgag tgccattttc
      961 catatggtta atgaggaaat gtatcatggc cagcttttaa aagtaatttg aatttatgag
     1021 ttgcggtgat tctaacacat gtgcacaaga aacac
//
LOCUS       KCLJ01001044             553 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 117016cal ultra-conserved element locus
            uce-5288, sequence.
ACCESSION   KCLJ01001044
VERSION     KCLJ01001044.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 553)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 553)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..553
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="117016cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>553
                     /note="ultra-conserved element locus uce-5288"
BASE COUNT          156 a          106 c          100 g          191 t
ORIGIN      
        1 agctaaaatg caagaactct aagtaaattg ctccttaccc atcgtcagtc cgggaagaac
       61 actccttgta gcaagcagtt gaaaaaaaat tcctaaccca caaaaggatg tagaatgtgt
      121 tgttctcctg gatgctcttt ctcagtgtga tcaagaggct ttcgtttagt gaatccattt
      181 gctcactcag ttttggagag tcgcccttca tttattcttt ccctttggaa gtactttcga
      241 gtgcaaatta ctgctatcag aagccttgaa ctgagaggct attattctcc atgctcagat
      301 taaattaatt ttgaacagtt taatgcagca tgtccgagct gcaagtccaa gtggtgtcaa
      361 atctatttct ctgctttttt aagctgcacc ttcaagggca gtatgattca tggtaaatgt
      421 gttcttctaa tgtcttttgc taggcattat tattttcttt gcaagtcatg aggataaaat
      481 gttaactatt ttcctcctaa aattatataa agaatgcaca atttgatagc agccaagatt
      541 attatatttg ctt
//
LOCUS       KCLJ01001045             438 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 117125cal ultra-conserved element locus
            uce-5108, sequence.
ACCESSION   KCLJ01001045
VERSION     KCLJ01001045.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 438)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 438)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..438
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="117125cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>438
                     /note="ultra-conserved element locus uce-5108"
BASE COUNT          163 a           68 c           52 g          155 t
ORIGIN      
        1 gaattaaact ttaacaaata gatctttcaa aaactaaatt aataaacttc cttatttctc
       61 cactaagttc atagccttta cttaatgatg atgcacttga ttaaataaaa tgaaagaaaa
      121 atggaagttc tttcagacgt taaaattaat aatgagttta gacttaatcc aaaagcaatt
      181 taactttaaa cattcatatg aaattaaatg tgccattgaa tttgctatat aagcaagcat
      241 taatcttatc aatctatgaa gactggaatg ttatacagtg acccattaat ttcaaagcct
      301 aatacaaggt ctgtttaatg cttttagtct attaaaaagt gtcatcctac aatataactg
      361 ctttttcata aacgtttaaa ccccaattca ttctgttact gcgatcattt gataatctgt
      421 tctgacaaga ttatggtt
//
LOCUS       KCLJ01001046             830 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 117233cal ultra-conserved element locus
            uce-4666, sequence.
ACCESSION   KCLJ01001046
VERSION     KCLJ01001046.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 830)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 830)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..830
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="117233cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>830
                     /note="ultra-conserved element locus uce-4666"
BASE COUNT          265 a          121 c          161 g          283 t
ORIGIN      
        1 agcactgcca ttggtaaatg ctataatgtt tcccctcact attacttgtt ctctgtttac
       61 tttgatgctc aaagattgcc ctgttttaca agcatatttt cttaattgtg tcaccttgta
      121 ctgtaagtgt gtcagagggg aaacatttgc aagtgattag atatggacct ttgtgtcacc
      181 aaatgtatga ggtacatacc cttataggat ataattgtga tcttttaata tgcggccatt
      241 gacccggact tgttattatc tattatagtt tataataatg tatctcttta tgattaaatg
      301 atgatgcctg gcagaacact atgattagca tttcagttat ttatagatta tgtcagagca
      361 gtaataaaca taaaatgctg ttaatgtgtg gctaatgaaa tctggacatg aacaagttta
      421 tgaattgata taattcattt gagtgttcta actgagctgc tggttctcgt cataattcaa
      481 aagcttagca gggttcaccg attaggtggt agactaattt gctacaaaaa gtcaatgggt
      541 tttcatcgtc ttgggctatc atacacagca tggctgattg cataaggact atacaaagta
      601 attctcataa atatatttat taagcttaat atgttttgtg aggttaggat ggaatcagcc
      661 agtgcacaac atatgtggaa caaaatcgca gtgtgttaga tactaaaaag atatgttcag
      721 taaaatcatt caggagccga tcgatgaggg agttatttga attttaaaaa gtgagcaatt
      781 caatatcaaa tataaatgag agccataaag aatgatacat atgattgact
//
LOCUS       KCLJ01001047             721 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 117343cal ultra-conserved element locus
            uce-322, sequence.
ACCESSION   KCLJ01001047
VERSION     KCLJ01001047.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 721)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 721)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..721
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="117343cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>721
                     /note="ultra-conserved element locus uce-322"
BASE COUNT          202 a          158 c          149 g          212 t
ORIGIN      
        1 tttgctgctc ctgcttctcc acaggcacct catggtcctc cctgggcagg gggcttggga
       61 ggaaacaccc aaaaaataca gggttaatga agataaataa aaatacacag aacaggtact
      121 ctgcctttgc tcacctgtta ttttcaccat gtctaaggga aagcttataa atgctctgct
      181 cgggtttctt tatggaaaag ctggaatgaa acaacacaga gtacaagcag aagtttcaga
      241 ctcgctggat gtctctttct gtcagatgcc acagtgtcag gctcaaagcc atttgtcatc
      301 cctgaatttc attatctgct ccttccctgt ctttcagtct cactttgcta ggacatttgt
      361 tcaccgttga cctccctgac aaataataca ccttaattat gttggcaaga ggggatatgt
      421 cattcctggg ccactttaat tgtctatccg acaggcatcc tgctgcgccg tggagcttcc
      481 ctggtatttt caccacgatt ggatttctct ggccttatgg taacatcact tagtgatttc
      541 tttaaacaat cttttattat atttttataa gggtggtgtg aaatggggaa agggtgcaaa
      601 actgggcata acaaccaagt ctttgtgtag gataaatatt gaaataacta cacaactgag
      661 gattaagcag gaggatctct gaacatacct ttggaaaaca aatataaagc cctgagccaa
      721 a
//
LOCUS       KCLJ01001048             690 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 117451cal ultra-conserved element locus
            uce-1877, sequence.
ACCESSION   KCLJ01001048
VERSION     KCLJ01001048.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 690)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 690)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..690
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="117451cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>690
                     /note="ultra-conserved element locus uce-1877"
BASE COUNT          207 a          136 c          126 g          221 t
ORIGIN      
        1 acttcgaccc agaagcaatt cgagacttga ttttgcagct ggactacccc tacactcagg
       61 gctcacagga ctcagcactt ttgcagctgt tggagattcg ggatcgtgta aataaactct
      121 ctccacccgg ccaacgtcgc ctggacctct tctcttgctt gctccgtcat agactcaaac
      181 tgtctaccag tgaagtggtg aggatccaat ctgctttgca ggcctttaat gccaaattgc
      241 caaacacagt ggattatgac acaaccaaat tatgtagtta accataaatg tgaagcacaa
      301 cacaaaactt tgaaggagtt tttacagtgc ttttgtggaa cagtttatgt ttggaagagt
      361 aaatttaaat tgtcttttca atatctgtct tatatcagtc aatactgttg gatggcaatt
      421 tacacacatg aacttgctga caatatatta tacctgcagt tttggtttat gaatgaaata
      481 aatactgaca ccagtctaga agacattcta ctttttacaa taaatttcat ttgtaatttt
      541 atatgttccg tggcaatgct tttgtgcatt acatcctcta gagggaacat agaaggagac
      601 caataaaatt ttgtagctga acagttatta caaagaaatg ctgtgggatt cttttttctt
      661 acacaaaagt agtaactttg atacactttt
//
LOCUS       KCLJ01001049             639 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 117560cal ultra-conserved element locus
            uce-6102, sequence.
ACCESSION   KCLJ01001049
VERSION     KCLJ01001049.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 639)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 639)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..639
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="117560cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>639
                     /note="ultra-conserved element locus uce-6102"
BASE COUNT          217 a          121 c          121 g          180 t
ORIGIN      
        1 ccagtaccga aattaatatc cagtgtcagc taactctacc ttcaaataaa gagtgggatg
       61 aggaatttga ctacacctgc atagaaaggg ctcccaggat ggtagtggca cactcccaac
      121 atctgctcct tccattgaac ttagctgtaa attgaaattc cattgcaatg tttttagaat
      181 cagttgaagt aaggagactg tcagaaatcc tctttaaact cacccttatc caaacaggaa
      241 gctgacccct aacccccgga cgtaacagta caccagtgga aatttcatta tccccgtttc
      301 ggctgtacta agtgaaaatt aattgtgtaa ttatctggat gagcgcatgt gtaaaatttt
      361 acaatgtgcc agttagatta agtaacgtgt tagtggcatg gtttagtgca gagtcaaggc
      421 tgtcttataa aaacggcata agaagtccaa caagacttga aggaaaagag catatgtctg
      481 aacaaacatt aacatgagaa agtaatgtaa tatttaaaac cataacctga gtaagatctt
      541 agcctcctct gatggaaatt tatctggcaa agaagggatc ttttgtctat cactttaaac
      601 tcacttgatt taatggacaa aatatgatta caatattaa
//
LOCUS       KCLJ01001050             705 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 117667cal ultra-conserved element locus
            uce-544, sequence.
ACCESSION   KCLJ01001050
VERSION     KCLJ01001050.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 705)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 705)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..705
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="117667cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>705
                     /note="ultra-conserved element locus uce-544"
BASE COUNT          224 a          104 c          123 g          254 t
ORIGIN      
        1 tttttcaggg actactgtaa taaggagtct aaaatttcat ttaactgaaa tttaagattt
       61 aaaagataag tactgttcag ttgactaatc aaatagtcat aaaagctctt ttctgaacta
      121 taattacatt tattcagttc tgggtttgat ttatttttta ttttaattgt cagctctgct
      181 acaccatgat gctaatagaa atgttattgc agccaatatg ggctaaaatg atgtctgatg
      241 attattaatg agagcaataa gaaggtatct tcatataaag tcagcattaa aggagtaatt
      301 cattttacct gatataattg gattgtagca tttaaatagc ctgggacttc ctcttaattg
      361 tgattagttg tagcttcttc cttttagtac catatttaac tcttcctcca ctactacttc
      421 tgtttcttct atgaagtaat taaacatgaa ttgctcagtg ccttttaata aatatatcca
      481 aggatttagt agctgttaaa tggaatagct gcctgttaga agtagttatg cacagtaccc
      541 atagctggag atgtgaagcc atcacttcgc tataatgttt tatatggcac atcattatac
      601 aaatgcatca attgttgctt tggttgcaag aatcacagca ggtgcctttg tcaggagcaa
      661 ttgtaaagca gaattttatg agaatcaaat gaaaggaggg taatt
//
LOCUS       KCLJ01001051             650 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 117776cal ultra-conserved element locus
            uce-998, sequence.
ACCESSION   KCLJ01001051
VERSION     KCLJ01001051.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 650)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 650)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..650
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="117776cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>650
                     /note="ultra-conserved element locus uce-998"
BASE COUNT          197 a          142 c          116 g          195 t
ORIGIN      
        1 ctgttcctga tgtggctctc aaactactcc ccttctattt taattttaaa gtaagttagc
       61 aaacacttcg ttcctaatcc ctggggacta tctgtatggt gacacaaacg cacaaattta
      121 tgacagtaac ataaatgctc ctccgaagta atgtgcaaca ttaagtgaaa tcgtttcctg
      181 gaaagatatt ataggtatct atattttatt taaacatatc tgggtcttta tgaccttatt
      241 tttaaaatgt atttcctttt tacatttcct ggtgcaaatg gactgcataa ataagcaatg
      301 tgctatgagg cttcagacta gccgataaac cctttcaatt ttcatgccag cttcttcttt
      361 tgtaattcaa atctggctga aaactggcag ctctgaaaac tgaaacaagc actgccacaa
      421 ataccttgta atgctatcga ccttgtctgc ccatgcagtg agaaaggggg atgcatatgt
      481 gtctgcagtc atccagataa cacaactcat ttttttgggg ggataacaga agctggaccc
      541 gaaccgcgca cccaaagcag tcattaccag gcaggctgga gaataagtct cttcaaaata
      601 cacagcgaat ttaaaaacca tatacagggc tcagccactg ctttcattac
//
LOCUS       KCLJ01001052             551 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 117883cal ultra-conserved element locus
            uce-931, sequence.
ACCESSION   KCLJ01001052
VERSION     KCLJ01001052.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 551)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 551)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..551
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="117883cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>551
                     /note="ultra-conserved element locus uce-931"
BASE COUNT          177 a          107 c           99 g          168 t
ORIGIN      
        1 aacttgaaaa ctatattaat aattaagacc cagatcctga gtgaatcaaa ctcctctttc
       61 tctcaatagt taatgatttg aaatatgttt ctggctgaca acaacagaaa aatctcacta
      121 agactaggaa gttcctgcag gaatgaaact ccctttctgg cttacagggc tatgttttcc
      181 tatgcaaatg cagcaaagcc cagaaattag caatgactgc taaattaaca cacttgaaga
      241 gcttggctgg tcctaatagg cagtcaaatg gtcttgttac attgtaatgg tgccaagcta
      301 attgaagtga ttactgttgc tcatgagcag cccttttgaa gtagaagtct tttaaattat
      361 ccatagacgt taaatgtcag acactattgt gtaattatac tttgtaaacg ctgaatgtca
      421 taaggcatca caggtaattg aggtttacag agaagagctt tatctaaacc taattgggca
      481 tcaactcttt gtcactattt ctaaacctaa ttgggcatca aatttttgtg ccagggacac
      541 tccaacacct c
//
LOCUS       KCLJ01001053             527 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 117993cal ultra-conserved element locus
            uce-7607, sequence.
ACCESSION   KCLJ01001053
VERSION     KCLJ01001053.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 527)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 527)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..527
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="117993cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>527
                     /note="ultra-conserved element locus uce-7607"
BASE COUNT          160 a          112 c           88 g          167 t
ORIGIN      
        1 tacagaaggc agccctctaa ttctgtctcc catatcttaa ctgaattcct tgccatttca
       61 tgggcattac tgtagatttg ttttacacga tcaggaagca aatatgtgtt atgcattaaa
      121 tatcacataa gcagggaagg agtacagtaa ttttacagac tcttgtttct aataaatttt
      181 cacagctacc ctaaactgaa ttagcaagtt ccagtttatt gtcaagcttg tgcacaacat
      241 ccctcagtga catgtcaaat ccttaccaag gcagctgaac tcctaaagct gtcctcattg
      301 gcaagaaact tgtcagatta aattgccacc tcttgtcagg taaagattta tgatcagata
      361 tccccctgct gctgatgaca caaacagtcc tttcactttc aagtattatg aatctccagt
      421 gttactatga gcagagattg agaggaaata ttccaccact ttcagcatgg tttattaaaa
      481 atacagacac aggaacactt tttctcagtt tcagggtatt tgtttat
//
LOCUS       KCLJ01001054             568 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 118102cal ultra-conserved element locus
            uce-5853, sequence.
ACCESSION   KCLJ01001054
VERSION     KCLJ01001054.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 568)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 568)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..568
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="118102cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>568
                     /note="ultra-conserved element locus uce-5853"
BASE COUNT          149 a          130 c          104 g          185 t
ORIGIN      
        1 aggaggggca tttcggtagc tgcttcttca cctctctcac gtcactcttc cccgctccct
       61 gctcccagca caggggccct gtgaactcct ggccatggga gccaactcca tcacaaaggg
      121 actctcctga cgtgttttca cagcatggaa cccatttcac accgcccctc tccttcaggt
      181 ttccatcccc ttgggcctaa gtaacactac tgtggcactg acttcaataa gtaacttttt
      241 attgtgtcta atcatgtgca aatgtgttaa aattggtagt ttttagcaaa cagttatgga
      301 acatattacc gtaaggcatt tgttcatggc gtgacaatga ttggctccat gccacttaaa
      361 tgttttattt aataatgtgg gaatttcagt gtgttttcct ttcattattt ttaacttgaa
      421 aacagaaaca gaaagcccct tctttaaagt taaaacttta ccgcctagag tctgtcaaaa
      481 gcaatataag catctggatt ttaaaaaggg agcttttgca ggatgttaat ttaatatact
      541 ggcatatttc atgcatactt tttatatt
//
LOCUS       KCLJ01001055             650 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 118212cal ultra-conserved element locus
            uce-1713, sequence.
ACCESSION   KCLJ01001055
VERSION     KCLJ01001055.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 650)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 650)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..650
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="118212cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>650
                     /note="ultra-conserved element locus uce-1713"
BASE COUNT          174 a          140 c          138 g          198 t
ORIGIN      
        1 cacaaaaacc atccagcgtc cttgtcagaa aaaatcagct tgacttgcag ctgacagaac
       61 gcagagcttg cagtgcacct agcgctgcta gcagctccag aagcctcctg caggaggaaa
      121 atttatttct tctggggtgg cacttaaaaa ttaaaaaagc gtcacctgga gttctcatta
      181 gagcttcagt ggttatcagt aacccataag ccttgttttg ctggctgctt actggtgcat
      241 ttaataaaat aaagatcact ccgtggtgcc gtgggcagca tgcaaggtga tagccatatt
      301 tgcttactgt aaatacaagg ggaaatcaca cacaaacggg ctgtagtttt gacaagtatt
      361 aagatggctc tttacatctg tactcctgta ccaaagtgca attagttttc ctcgcacaag
      421 gatttctgtt tatcttattc tgcttgatta cttgagcata atcgcgccgt ttgcttcatt
      481 gctcctggta gtaagctcca gtttaaaaag gggaggatga gtgtgtgtaa atatacagaa
      541 ttctgctgta agactctaat ttatgcatct ggatgacagc gtttccttct cctttactct
      601 ttctttccac aaggtttggt tcatgtacat cagattcctc ggctcaatag
//
LOCUS       KCLJ01001056             692 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 118324cal ultra-conserved element locus
            uce-2811, sequence.
ACCESSION   KCLJ01001056
VERSION     KCLJ01001056.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 692)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 692)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..692
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="118324cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>692
                     /note="ultra-conserved element locus uce-2811"
BASE COUNT          228 a          143 c          121 g          200 t
ORIGIN      
        1 taattagttc ttgttacttc ccgaagaatt caaacaccct tatcattcaa atatcaatta
       61 ctttttaatg ttgtttcttt acacaagctg aatgaccttt tgatgttgct agatgatgaa
      121 tattggttca acatatacag aattacagga ctgagggcct cagacagatt agactaaatg
      181 tcagctgttc ctccaagcta ctacttctgc caatccttgt gcctggtatt tatttttctt
      241 ttgtgtttac cctacagggc tctatgaaaa ctatccaacc aatgcagaac cagaatgctg
      301 tgatgtcaga tggggactat tatcagatca tcaacccaaa gggactataa aaacaagtgg
      361 ctcaacaatg tgtcacagga catcgctcac agtttcatca gcatcaagac tgtgtaacag
      421 cagacttaaa ctgtgtgttc ttgtattaat tctcttacat acagtactta cagtctcagc
      481 agcacagaac tcaacaggac tgggctttgg aagcataaca actttggaag ataattcaac
      541 caatgaggaa taaaagaaag gattcatctt acatgataga aacacaacag gcccaaatta
      601 ctacagtaaa aatggactga gtgctttacc ctcagagctc ttcttgaatg actttgggta
      661 aaatgaaaag aatgggccac tacctaaaca ac
//
LOCUS       KCLJ01001057             426 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 118434cal ultra-conserved element locus
            uce-297, sequence.
ACCESSION   KCLJ01001057
VERSION     KCLJ01001057.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 426)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 426)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..426
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="118434cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>426
                     /note="ultra-conserved element locus uce-297"
BASE COUNT          122 a           59 c           72 g          173 t
ORIGIN      
        1 gctttacttt acataatttg ctgattatat ttaaaagaaa tacaattttg caattactgt
       61 tctttctggt gtgctatcta tgcatcattt tctttttatg tttatatatt tctccttcat
      121 tagtgcagtc tgaagggtga ttagatccct tcaaacattt tacagaggtt aaacgttgat
      181 taagatttaa ttattactgt aaatagcttg gaatgacata tggtgcaaaa acctgacata
      241 tgtgcatttg aataaatgaa gtgctatttc ccatgatgct tcagtagctg tttaacagct
      301 ttgctgaagg gttatgttgc acctcatgtt aagattgctt tgatgttata ttttgttggg
      361 tttttgcagc tgaaagctaa gaacagtttt tccagttttt aaaaacattg aatattttaa
      421 atacct
//
LOCUS       KCLJ01001058             858 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 118540cal ultra-conserved element locus
            uce-1813, sequence.
ACCESSION   KCLJ01001058
VERSION     KCLJ01001058.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 858)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 858)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..858
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="118540cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>858
                     /note="ultra-conserved element locus uce-1813"
BASE COUNT          246 a          179 c          214 g          219 t
ORIGIN      
        1 atgtgaagga attaatgaac taaataacag ggaaaccttt ctgttcagaa gaactggcat
       61 ccatatagcc acattctctt tcagctaacc tttgtgggag agaaacttct gctgatgtca
      121 aaggagctgg aggacattag cagctgaggc tggtgggttt gtctccccag caccaggctg
      181 gcttccctca ctcctgccag tgaccttgca aacagctccg acaaaggtcg gaatggattc
      241 attgatcagc caggccaagc atatgacagt ctgtgcctta attgaatccc aaaagggggc
      301 agactgggtt tttattacag aggccagacg atagcactca ttaaaagctc cacagactgt
      361 gtggtttact aattagttta ttatacagac accttgacga tgggcaaagt tgtcattttg
      421 ccctttatcg cacaggggat gttgttaaaa gtttaatcag ctaacactga ccaacttagc
      481 ttggcaggct gtggacagtc attaccgagg tcacccctgc tgtagcaatt ctgacagggt
      541 cacagcatga atctccaata aaaagcacgt tacataaggt aagagtgcac ctgaaaggga
      601 accaggagaa gagatgtgca cagtggggag tgggaaacag atggactgtg aggacaagcg
      661 aagcctgtta gggtttctct ttgcttacat tgtttaacat atgctttttg gaaatatggg
      721 gagctctgag ctgttgctgt gatatgttca ttagaacaca agatagccta aaccaagtgg
      781 tctgtgaaca ggcactaagt ggctctgctc ctgcaagagc agggatgatt ttgctagtta
      841 agcaaagcct aacaccca
//
LOCUS       KCLJ01001059             532 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 118650cal ultra-conserved element locus
            uce-5908, sequence.
ACCESSION   KCLJ01001059
VERSION     KCLJ01001059.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 532)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 532)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..532
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="118650cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>532
                     /note="ultra-conserved element locus uce-5908"
BASE COUNT          186 a           91 c           96 g          159 t
ORIGIN      
        1 gggcagatta agctctgtga acctcacagc tgaaacctca caacactggc aattttcagt
       61 gattaaagta atttacttta tctataaaat gtaaagatat ttcataatag ccatacagca
      121 agtacaggga ggtgtagctt tcctggagat aatcagacct ctggggataa agggtcctgg
      181 ctgcacctca tgcattgcga gacccagagg gctttattat ctgatgatta ccacaccccc
      241 atttccatgt ctttttgctt aattaatcac agtaacatta ttgcccaact tcagacaaca
      301 aaaataatga gaggggcttt aaaagattca aagactagag gaaaaacaag agatcccata
      361 ggaaagtacc catagtgaat ctggggttta caaatcactg aaatctatta aaaatgatgc
      421 ttacattttg taaagtgcct tctttaatat aaatataatt atgttttaaa tattgtaaat
      481 gtgtatatac aatataaaac atatacttgt tttgatcaga ggagatgagg tt
//
LOCUS       KCLJ01001060             782 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 118756cal ultra-conserved element locus
            uce-2700, sequence.
ACCESSION   KCLJ01001060
VERSION     KCLJ01001060.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 782)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 782)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..782
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="118756cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>782
                     /note="ultra-conserved element locus uce-2700"
BASE COUNT          238 a          140 c          179 g          225 t
ORIGIN      
        1 ggctctggta agtacataag cagccattat tgcagcagtg tcccccataa acatcatctg
       61 gggccaggct gggggtgagg gtgcattcac tgctgccagg agcatattct cacaacacaa
      121 gccaaggagg tccatttcat gcctccacct cactggtcta agaagaaatt aatgtggcgc
      181 agaactcagt gatatacttg ggtctgggag ggctggatta caatttaatt ttcgagctat
      241 tgggttctaa gcctgcacag tcttaagctt gcagctattg gcatgtttga cattttaaac
      301 tatgaaatac caacctattt tgaaattgtc caaatcatta gttgtggaat tttcctagca
      361 cttcatgaat accactgtta attgggcaat taactcgaaa ctacagaata tgctgtgatg
      421 gcatgatatg atataagcca tgtaaaagaa ggaacagcca agcaactcag tatgttgaaa
      481 gatattaatg aagtggcaaa atctgccaga aaaataataa tgggtgattt taactacccc
      541 aatattaact ggttgaataa cacatctgta catggtttgg agaagcagct tattgatact
      601 ataaatggct tctttttgga gcagctcctt ctggagcaca gaggaggagg agttccactc
      661 agttattaat ttgtgtgtgt gtttgtgtag aaagcaagca tgggtgttct gctaagcaac
      721 aatggccatg ggacaatgag tttgaatcta tgatgaagta tttcaagtgg taaccaaata
      781 gt
//
LOCUS       KCLJ01001061             632 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 118868cal ultra-conserved element locus
            uce-2168, sequence.
ACCESSION   KCLJ01001061
VERSION     KCLJ01001061.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 632)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 632)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..632
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="118868cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>632
                     /note="ultra-conserved element locus uce-2168"
BASE COUNT          204 a           96 c           96 g          236 t
ORIGIN      
        1 aaagtaatgt gggataaaat actgttttct tttctagatt ctgctcttca ggaatagtta
       61 atgtctagta ttatgttttt atgtaggtat tatagattaa aataatcttg ttttaaaatt
      121 actgtttacg tcttcctttt aaatttctta ggaagcttaa attacatgcc agtcatacta
      181 taatatccaa aaattacttt ccaaaaagta aaagtggttg tcaacaaccc tgtcagaagc
      241 caggaaatca ccaagcaagc ctgctaatta ttcttaatgg gcaagatgag cacattaaga
      301 aacaaatgaa tacatcagtg aaatgtaatt gaaaatcgac ctggcaatag tgcattgcat
      361 ctgagaatct gcctttgtat tatcaacatc atcataatta ttgttgtttt tgttgttgct
      421 atcactattc agtgagcata actaacagct ttgctttgtg aaatctcagg cttttgagga
      481 tttgattttt ttttgacatg ccatttcata ctgccacatg aagtattcac tatgtatata
      541 tcaatattag gatacgttat tgaaatgttg gtttaaaaat ttttttaatc aaataattgt
      601 tgccgttcta accctctcat tttgaaatat ac
//
LOCUS       KCLJ01001062             618 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 118978cal ultra-conserved element locus
            uce-7184, sequence.
ACCESSION   KCLJ01001062
VERSION     KCLJ01001062.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 618)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 618)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..618
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="118978cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>618
                     /note="ultra-conserved element locus uce-7184"
BASE COUNT          172 a          104 c          125 g          217 t
ORIGIN      
        1 tgacactctt ggttgacctt aggtatgcag aggaacacga aatgcatcat taaaatgctc
       61 agtcttagat ttcgttaatt ttatgactgt aaaattgtca cctacgtttc caaaggaaat
      121 gttctaataa ggaagacagg tttatgtggt aaggctttgt agttcttcag ttcagaccat
      181 acttgaaact ttttcactct tcctttaggc aaatccctta gaagcagaat gtttcaattt
      241 tacacatttt gtgtcaattt tccagacaga aaagtagccc ctagacatca gacatttagc
      301 tacggaaagg cagtttcctt agttttattt gattactaga agttagattc ctgctgatag
      361 ttcaggactg ttagtggtta cctgactatt tgacagaaaa catttcctct cctttgttta
      421 acctttgact catgaatgta aaagttttat cagagctgta gtagaagcac gggttaggtg
      481 gaagtctact tacggcaaca agggttgtgt gtgactttta ttcaaagtct gagttgtggc
      541 tcatttggat taagcgaaaa tgctaagtat gtttttaatt cttggtctct tgcttttgtg
      601 acagacggag ctatactt
//
LOCUS       KCLJ01001063             582 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 119082cal ultra-conserved element locus
            uce-4850, sequence.
ACCESSION   KCLJ01001063
VERSION     KCLJ01001063.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 582)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 582)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..582
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="119082cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>582
                     /note="ultra-conserved element locus uce-4850"
BASE COUNT          201 a           93 c           97 g          191 t
ORIGIN      
        1 aacttaagag taaaaactaa cttgtcaaag cagaacactg tttacagtga aaaaaaaaca
       61 ggtagaactt gcattttaaa caaactatca gtgtaagaaa aacagcttat aacatatgtg
      121 caaccaagag cttttcacaa tattttcttc aaactcttta aaattatctt ttaatgacaa
      181 ttatatttca gttggacaca aatgtattta ttttacccta gcaatagaac aaaatataat
      241 ttctttagcc attttttcat gagaacggtt cattgtacag ttgaggaaat atatgaaata
      301 aggcctgtgg cttgattgct agtggttaga catgtattca atctttgccc taatggaaaa
      361 gatttgcagt gaactgcaaa ttgatgcaga atatctctcc tgcttttgca agtcttgtca
      421 ggaacagtaa ggtacagtaa atttgtccca caggatttta aagcctacgc cttgtatata
      481 atacaatgta ggcctaggtg gtgcagccat atttacaaat ttagttcaca aactgctgca
      541 gtaaaatggc tggaaagtgt ttatttctct tttgttaaat tc
//
LOCUS       KCLJ01001064             370 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 119192cal ultra-conserved element locus
            uce-7310, sequence.
ACCESSION   KCLJ01001064
VERSION     KCLJ01001064.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 370)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 370)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..370
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="119192cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>370
                     /note="ultra-conserved element locus uce-7310"
BASE COUNT           94 a           87 c           85 g          104 t
ORIGIN      
        1 gtcagctgca gcgcacagcc cacttttatt tatttgtagc ttttgacacc caccacctcc
       61 ctgccagcct ggtgtggctg atcaagctgt tcaaacaact ggaagacatc agaagttaaa
      121 cactcattat tttaatttga tgctaatcat gtgttaatga gactaatcct tgcaatgatt
      181 caggtaattt gcttaatggc tgcccagagt acagattaca gcaatcagtc acatctgata
      241 agatgtctgt tgtggaggat cctgtcaggt gaatgaggtg ggaagatctg ataagtcggg
      301 aaccttcctg ccccctgcac acggtcctct cctgcctgga gaagactcgc acgaggtcat
      361 ttgggtcatg
//
LOCUS       KCLJ01001065             701 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 119301cal ultra-conserved element locus
            uce-7081, sequence.
ACCESSION   KCLJ01001065
VERSION     KCLJ01001065.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 701)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 701)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..701
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="119301cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>701
                     /note="ultra-conserved element locus uce-7081"
BASE COUNT          177 a          159 c          154 g          211 t
ORIGIN      
        1 gggaatgctg cccatcgatc aataggtgta tgatgaagga actccgtgct gctccccctg
       61 accagcggcg atgttttccc aatgattccg caggagtcag aaactcaaca aagcgaatcg
      121 cggccgctgt aaggggagca tgctgctcat gtctgtgacc actgtatgca aagcttggca
      181 ttagtcaccg ccaggccgcc tctgacagcc ctgaagtgag ggagattaat gtgaggcagg
      241 ggcactttat tattgtcatt ctgttctttc acactctgcc tctgactttc aattttgctc
      301 cagaattaat tgtctgctcc ctacagtatg actgatgtag aaggatacaa gtaacatagg
      361 cacctggttc tggccttgac aatctgactc gttggtgcag gatgtattgt gtacagtcaa
      421 attcagggac agacgggcat ctttcaaaga aatcagccaa tgtttctttt gacttcaatc
      481 agatttgact gtagattatc cttctctaag aacaattttt ttcttgtaga gatgctaaca
      541 aaatgccagt gccgttatta agtaccacta catgatacta ttgctccgct ttatgcagtc
      601 tcatatgagg cctttctctc caagctttgc tttttatgta gtaaggcagt aaattagtca
      661 tgtagcagtg tttaatccct accctctcag agttaagcat t
//
LOCUS       KCLJ01001066             493 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 119408cal ultra-conserved element locus
            uce-5963, sequence.
ACCESSION   KCLJ01001066
VERSION     KCLJ01001066.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 493)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 493)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..493
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="119408cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>493
                     /note="ultra-conserved element locus uce-5963"
BASE COUNT          124 a          118 c           88 g          163 t
ORIGIN      
        1 acactccctg cagccaagag gggaggagag gaagttccag ggtgcatcag tgagatgtgc
       61 cctctgcagc atgcatagat tgactttaca gcacttgaac tccacgaatg caaatcatcc
      121 ccgtgaagga aagagcatgt aacactgccc ttgctctttc tccttctttc ctttcacttt
      181 atcctgtcag caccgcatat atcaaactag agctctgggt tttaactagg ctttactgtt
      241 tcattctgct tcatgaattt ttcagtgttt acacttatgc ttaatataat aagattgata
      301 atgcagctgc ctgatagatt ctcatccagg cttctcagct agagagattc ttattctttc
      361 tccctaattg ctgtaatatc caaaagttca ttttcacctc tcgcatcttg atgctttttt
      421 tcatctttca gctattcatc tcccaaaaca gtgtcttcaa ggtaacaaca cctgatggat
      481 ttatatggct ggg
//
LOCUS       KCLJ01001067             580 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 119515cal ultra-conserved element locus
            uce-258, sequence.
ACCESSION   KCLJ01001067
VERSION     KCLJ01001067.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 580)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 580)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..580
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="119515cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>580
                     /note="ultra-conserved element locus uce-258"
BASE COUNT          185 a          115 c           98 g          182 t
ORIGIN      
        1 gctggatgct gggaaggcta acagttagca gtagggacat ggccctgctg accacattta
       61 atcaaccttt ctgtaaacaa ttcaacattt tcattgttct ctaaaaacta ataaagagaa
      121 acaagcactt ttcattcatc ttgaagtaat tttctgtcag gtttgagccc cttgtggctt
      181 acagcttgtg cattgctagc tgtgtgatac aacaactatt tcaatttatt ttacaaactc
      241 tggccattca catgtcagtt agtgctcacc aagccagcat ctgaaattgt gcagttaacg
      301 agttttacaa catttctatc aagagaaact gtttagcata actgactctt aaggagttat
      361 tatacctcta aaaatccatt ttaaggggca ttatttaaat aaaatagaaa aacggttcac
      421 tgccttttaa aggggctaca aaaaaagtcc atcagatcca gtgcagtaat cctcagctta
      481 aagcactctt gagagcactt ctgggaatta tcagcataat gaaatgtttt gtgaaatgtc
      541 cagatagatt cctctactca acaattttac tgcactatat
//
LOCUS       KCLJ01001068             545 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 119624cal ultra-conserved element locus
            uce-2600, sequence.
ACCESSION   KCLJ01001068
VERSION     KCLJ01001068.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 545)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 545)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..545
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="119624cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>545
                     /note="ultra-conserved element locus uce-2600"
BASE COUNT          148 a          138 c          115 g          144 t
ORIGIN      
        1 ctgtctgaac tttgtctcgg gtacgaaagg ccttcagaga gctcaggaca tgtttgtggc
       61 aggtgaaatt ttctgtccag gcagccattc taccaggcag catcagctgc ccgaggcaca
      121 ctgccttcac actcttttgc tccacagctt tagcttattc cttttctcag aagagctcct
      181 tctaatgtct acacaccagc aaacaaaaca gatggggtgg tggaaaatga ataattagcc
      241 tctgcaccac tgagttcaag ctaatactct gaaccaggta tgacatcaaa tcatttccag
      301 tgggacaaca aatgtcatga tggagatgag aatttttcag atgcctcttg tcagaagcaa
      361 acacgagaaa ggttttaact cttccagtag tctgcaagtc ccaaaggttg tgttcgttgg
      421 ctacaagatg gaaatctctt cttttctcag cgtagcaatg gccgccacca gcacaagtaa
      481 tccctcaggg cccagctttt ctacctcagg cctaaagact tctaacacag ccttggcatg
      541 catag
//
LOCUS       KCLJ01001069             595 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 119734cal ultra-conserved element locus
            uce-6447, sequence.
ACCESSION   KCLJ01001069
VERSION     KCLJ01001069.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 595)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 595)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..595
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="119734cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>595
                     /note="ultra-conserved element locus uce-6447"
BASE COUNT          197 a          123 c          111 g          164 t
ORIGIN      
        1 atacctggaa gggattcttg ccaccaagct ggtaaaaagg acacatttat aaccttctct
       61 acatgcatga taattcagca ttacagattt ccagttaaat gattgcaaag tgatgccaat
      121 gttctgaaac tgacacctta cttttgcgac cattctctgt gttggagaag ttcctctatc
      181 cagagccatt tattgagcaa acacacatga tctaatagga catcatctga tcaaagctgg
      241 atacctgact ttggagtatg agaatcataa acttgcttac ggtctatctg gtctgcaaac
      301 acttccccat agatcatcca gtaaggcatg taaaaaatgt tttttgccag cttccacgaa
      361 ggctcctcat tggggaagag aattgcctgt cttgccacac caaagctcat cagaaccacc
      421 aacatgatga tgacaaagta catcatgtct atcatctgaa tgtaatgaca ggaaaaagga
      481 gagaagagag agaaaggaca acaattagag gaactttttg tccatattcc ttatcatgaa
      541 ctgctctgtg aatcttagaa acagaatttt cagaaacaaa ttttgaaaag ccgtt
//
LOCUS       KCLJ01001070             869 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 119839cal ultra-conserved element locus
            uce-1456, sequence.
ACCESSION   KCLJ01001070
VERSION     KCLJ01001070.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 869)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 869)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..869
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="119839cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>869
                     /note="ultra-conserved element locus uce-1456"
BASE COUNT          275 a          121 c          178 g          295 t
ORIGIN      
        1 ctgtagtaga gatggaaaga gttaaattaa ctgggtcaga atgctaaaac tgatattcct
       61 tcatctcaac ataccacatt aaagagtagt ttggggtgcc tggcatcatc atgactagta
      121 atatacgtaa tatcagcagt attgaggatt attcataatt gaagcacaat aaataaataa
      181 ataaatacgc attatgtgtc tttgtgcata ttagagatac ataataggca gtatatgttg
      241 aaatctatgt ttcacatcaa acctctatag catgcttcat gagggagaca agacccatgt
      301 gttttgcaga agcttttaaa gctgtttcat ttattttatt agcctttaat gaatgtaatt
      361 agaacccaag taattaaatg caattgtgct cagtatgttc ctgttgtaaa ttgccctaaa
      421 caatgtgcat ggtgtgaaca aatttgtggg attaatagag gatagataat gtttttggat
      481 agtatttcac actaaacggc cgcagagaga aacaaagaag ctggcgcagt gtcattaatc
      541 ttagtcaact ggcagttctg gtgtaatttg catgacttag gcagtgacac aagatggggc
      601 tagcttggga tgggtgttag atcactagga tacgtatata tttatttctc tttagtactc
      661 tgatttataa gtagaaagaa gtttgtttta agaaactgat tcattctggt ttcatctttg
      721 tcttagatta atagaattac tggcagtata ttgtatgtgt tcctttgttt ttatagttag
      781 catattggtt tatggatatt aaaaaacatc tgtgcatcct tatcaccaca gaagaaaagc
      841 agatgtcctg tgattggata gtgtgttgc
//
LOCUS       KCLJ01001071             743 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 119951cal ultra-conserved element locus
            uce-5422, sequence.
ACCESSION   KCLJ01001071
VERSION     KCLJ01001071.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 743)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 743)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..743
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="119951cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>743
                     /note="ultra-conserved element locus uce-5422"
BASE COUNT          247 a          145 c          117 g          234 t
ORIGIN      
        1 aagaggaaaa ttctgtcctg aaatatgact gggtgattat atttagcctc agaaagatcc
       61 actgaagaat catctgcttt actgggtata ctcctgacac tggtacagta ttcatttgca
      121 acctagcaaa tcattgcaat gtaggattat gaacatgcat taaattaaat atttttatgg
      181 agtttttctc ccaccttagg atgcactcaa cactttcctc cttcctgtct gacaatatgt
      241 tgccatgcta taaaagctct aatgcccatt tcaacgatta gctgtacatc agcattacta
      301 cttcaaatcc acaagtttca catcaagcat taaatgggat gaatattgat ctgctaaaga
      361 ggatttattt atttctagct ctatccaaag atcaactact agcagctttt ggtggatctg
      421 ttgagctctc acagcacaaa gctactgcat acatgacacc ggacttgaca tttcagttct
      481 ggaagaaaac caaacagtaa attcactgca ataatcctag ataaatgaga tgatcactgg
      541 aaaagctgag atagttaagt ggtctatcag aaaagtccaa aggatgatat tgaattgttg
      601 ctacataata acctatctac atggcacaag atcatctgcc aatattttca ccttgattat
      661 cttggaatac ttcacaatta tgttctgagc tgaaaatttt atactcagat tataatcaga
      721 tacatatcaa tatcacaata ttt
//
LOCUS       KCLJ01001072             694 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 120063cal ultra-conserved element locus
            uce-7617, sequence.
ACCESSION   KCLJ01001072
VERSION     KCLJ01001072.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 694)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 694)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..694
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="120063cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>694
                     /note="ultra-conserved element locus uce-7617"
BASE COUNT          242 a          127 c          112 g          213 t
ORIGIN      
        1 atagagcaga gtatactgaa taaagaatta tgcatacatc cacaaagtcg tcttcttagc
       61 caagtggggt ttcatctccc atgctcctaa gtcaattata attaacatct ggagtctctt
      121 taaggcaagc attgtttgta ccaacattac ttaatcttct ggttagcttg tgcttaaaca
      181 gtccacagag gaccaataca gcaacgaaga gtttatttct cgtaaagtaa ctagagtctt
      241 gttatcctaa agtgctatca gttaatttat gactatcaga gtgggtcaga ctctaatcaa
      301 attgtagaaa catttccaaa gtgattattc aatcaaatga ctaacatggt taattaggag
      361 ccataaacat tgctctgaag ttcatcaaag taatgacttg cccagaaaaa ttactgctaa
      421 ttaaattgcc tgctgctttc atttctacct tatctaataa aaagtccaac caatgaaatt
      481 tagtattgca gttttaaatt gtactaaatg cttgactaag acccagaagt atttttacat
      541 gctaagcgga gctacttcaa aagaaaacat tttagtgcag aaattacaaa gcaattatat
      601 gtttccttct tcttaaacca ttgtttcaag acaacaaata agacagaagc aggcatgaaa
      661 tacttccagg gcaagatcca agagatgact gatt
//
LOCUS       KCLJ01001073             620 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 120173cal ultra-conserved element locus
            uce-5889, sequence.
ACCESSION   KCLJ01001073
VERSION     KCLJ01001073.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 620)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 620)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..620
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="120173cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>620
                     /note="ultra-conserved element locus uce-5889"
BASE COUNT          197 a          112 c          103 g          208 t
ORIGIN      
        1 aactcgtgac atccctccat atcaaaatgt tttggttatc attctgttta aatagtaaca
       61 ttttattttt ttaagcactt agattcttga tctgaatcca tattcatgga ggtctgctgt
      121 aatccacttt accacttaat gttgcaattc aaatgttcag taagaagcaa agccctccag
      181 aataaagcat gaatattacc gtgtgggggc tgtaaagaga agactattag aatatatcac
      241 caacacacta ggggaccatt tagtgcactg ctctaaatac atcatttaat tacaatggag
      301 acattacttc atgtttctac tgatgtaagt attattagaa ttcatgatat tcgcaggcta
      361 ctgtgggcca ttacattggc cataagctat tccataagat ttactactaa aggcccgcaa
      421 gggtatttga gcattcatgg attctgtggc agtaggcttt tatctaagac acataagtga
      481 gggacaaccg agttattatc tctaagaaac atagcttaat attttggatt ctaaaggtta
      541 aggtaccata aatcctgaat tactctgaga tatcacataa aaagacattt ttattttatt
      601 ttactctact ctgcctctta
//
LOCUS       KCLJ01001074             571 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 120282cal ultra-conserved element locus
            uce-5072, sequence.
ACCESSION   KCLJ01001074
VERSION     KCLJ01001074.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 571)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 571)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..571
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="120282cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>571
                     /note="ultra-conserved element locus uce-5072"
BASE COUNT          167 a          101 c           97 g          206 t
ORIGIN      
        1 gcactgtaag tacttcacac atctccttct aagtaggata tattgaacat ttcacaaaat
       61 gacctgcaga cctttgtggt tttagatatg ttccatgtgt acttatagga caatatctac
      121 atactcttct aatatatggt tttagtctga agtacaaaag tctgatttat gtaagaccta
      181 ctcagataca ttaagtcagg ttaattattt ttcttatcag gagatgagag ttctttaact
      241 ctcccgaggt catttctgtg ccttctaacc taaaaagaat tcttaagagc tattataaga
      301 tctttattat tcacttgtgg cttattccat tggagctact tgaaagaaat caagggtccc
      361 taataatagc tgctatccta acctggtaat aggtagattc atctttgtta gagtggtttg
      421 ggagtgcaca ctgtaatatc tctgatttgg agcagctttt cagactgtca ataatgtaca
      481 actcaaaata gcagtttttt aattaaaggt tttgagctaa tgcccacatg aaaattttct
      541 tttcccttat gcctgcttag gctgcttaat a
//
LOCUS       KCLJ01001075             551 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 120389cal ultra-conserved element locus
            uce-3637, sequence.
ACCESSION   KCLJ01001075
VERSION     KCLJ01001075.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 551)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 551)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..551
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="120389cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>551
                     /note="ultra-conserved element locus uce-3637"
BASE COUNT          204 a           83 c          104 g          160 t
ORIGIN      
        1 aaaatttatc ataggatagt gctaatgcat ttatgcgcaa tgagagtcag tttaattata
       61 gtacatttaa gatttgccaa gggcaataaa ctttgcaaca tacaaaagtt taataagcat
      121 gaaacataag aacaatgtag actaaacctt ccttgcatcc gaaaagctga aatgcaaaga
      181 agtttttatt tattgcctca ggtaaaaaag tctgtagaaa cagataagtg atgacaaagc
      241 tttgatgtta ataaacccaa atggaagtaa aaatcaaagt gtgtaaatgg ctaggttata
      301 aaaagaaaga tgacagagtt ataccctgta attaggcata atttgtgctt ttggtgcact
      361 atttgtcctg catgaatgag aggttgtcct tgtccctgta taatagaatt gcagggcaca
      421 tcccacttaa aacctccctg ggacaataag tatttgatgg aagcactgga gccagttcgc
      481 ctttcctagt acttgaaaat aatcataagc tgagtgttta taaaacacta gaaacaaagt
      541 aataatttta g
//
LOCUS       KCLJ01001076             727 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 120499cal ultra-conserved element locus
            uce-6642, sequence.
ACCESSION   KCLJ01001076
VERSION     KCLJ01001076.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 727)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 727)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..727
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="120499cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>727
                     /note="ultra-conserved element locus uce-6642"
BASE COUNT          206 a          222 c          132 g          167 t
ORIGIN      
        1 aaccctttca ttgccacctc aggacctggc cacttgtctc atgtgcccca gcagaatccc
       61 agtatggcac cttctttgcg acactcagtc cagcaatttc accaccatcc ccctactgct
      121 ctccatgggg aatcagtagc ccacagtccc agattctccc ctaatcctcc ccagcagggt
      181 gctgttaggc cgcaaacact taattttagt tctcggagcc agacggtacc ctcacctact
      241 ataaacaact cagggcagta ttctcgatat ccttacagta accttaatca gggattagtt
      301 aataatacag ggatgaatca gaatttaggc cttacaaata acactccaat gaatcaatct
      361 gtaccaagat acccaaatgc tgtcggattt ccatcaaaca gtggtcaagg actaatgcac
      421 cagcagccca tccaccctag tggctcactt aaccaaatga acacgcaaac tatgcaccct
      481 tcacagcctc agggaactta tgcctctcca cctcccatgt cacctatgaa agcaatgagt
      541 aatccagcag gtacacctcc tccacaggtt agacccggta gtgctggaat accaatggaa
      601 gttggcagtt acccaaatat accccatcct cagccgtcac accagccccc tggtgccatg
      661 ggaattggac aaaggaatat gggccccaga aacatgcaac agaatcgtcc atttatgggt
      721 atgtctt
//
LOCUS       KCLJ01001077             978 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 120611cal ultra-conserved element locus
            uce-353, sequence.
ACCESSION   KCLJ01001077
VERSION     KCLJ01001077.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 978)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 978)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..978
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="120611cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>978
                     /note="ultra-conserved element locus uce-353"
BASE COUNT          262 a          192 c          211 g          313 t
ORIGIN      
        1 ttgggagctc gagcacaggt gagtggacag cattttaagt actgtgttta ttcaatgttc
       61 tctaaccagt gttagataat atgtatttac aaagccccat tctctgcatt gcccaccttg
      121 gcagcattga tgccattgaa cgcagcagca gtgaggggtg gctgtaaatt ttgcctcatg
      181 tagacaaggc ttacaaggta agcaggcaga cccccagctg caactgcgtg cctgggaatg
      241 gaacctttta tttgctgtca tagtgatgac ttttaattgt cccaataaac aagcttttaa
      301 aaagcttcta aaatgttctc taataacaca ctttggtctt tagccataga aatgcagaaa
      361 taattagaag tgccattgtg tacagtgcct tctggactgg gctgaaggtg aaggagaaag
      421 tatcatgcta tccttgtcag ctgcaagggt aattactgct ggctgaaatt actcaacatt
      481 tgtttataag ctccccagag catgctgtaa atagattgtc tgttatagtc caatcacatt
      541 aaaacgctgc tccttgcaaa ctgctacctc ctgttttctg taagctagac agagaaagcc
      601 tgctgctcac ttattgagca ccaagcactg aagagctatg tttaatgtga ttgttttcat
      661 tagctcttcc ccgtctgata ttacatttat agtttgctgg gcttgaagac tggcatgttg
      721 cattgctttc atttactgta gtaagactga atagctttat ttctggaagc tgtatgcaac
      781 agttgatggg aattttggaa tagcaaaagc gtgggaatat ctacaggcaa cttgttctcc
      841 tcttgggcaa tgtttttctc tttgccttct aaatgctcct gcactggttc cagcagtggt
      901 cacttgccta aattgtcctt taaaggatga ggagtatttt cataaaaggt tagaaagaat
      961 gtattttcct tagcactg
//
LOCUS       KCLJ01001078             449 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 120722cal ultra-conserved element locus
            uce-3249, sequence.
ACCESSION   KCLJ01001078
VERSION     KCLJ01001078.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 449)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 449)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..449
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="120722cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>449
                     /note="ultra-conserved element locus uce-3249"
BASE COUNT          150 a           88 c           76 g          135 t
ORIGIN      
        1 tttctgcacg ctcctgaata cacttgacat atgtaagcac aaacatggat gaaaatattt
       61 ccaaagggga aagaacacat gctcagatat tatctaaaaa gatgcattga aattcctctg
      121 tgatgaatag acttctcctc agggtgacct ctaccttcag aatatgatgg ttttattatg
      181 attaataaat ttcatttcca cagaggaaag gaacagtgtc agcttaaact taaagcaagt
      241 gggtttcttt ttaaatgcta atttttaaac acgcccttgc atgacaccaa atttagaagc
      301 tcagaaggtt agcagaatag attctgattt ccaggctgaa aataggaagg atttaaacta
      361 tattgtcaca ctgcaaatca gtaagctgct tcagtcccac acacactgct tcacttactg
      421 ctaactcctc attacaatta gtggcattt
//
LOCUS       KCLJ01001079             648 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 120829cal ultra-conserved element locus
            uce-5901, sequence.
ACCESSION   KCLJ01001079
VERSION     KCLJ01001079.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 648)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 648)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..648
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="120829cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>648
                     /note="ultra-conserved element locus uce-5901"
BASE COUNT          217 a          128 c           95 g          208 t
ORIGIN      
        1 ctgagattgt gatacaagat tgcattcact tttacctgac cctaagcaat acaactctaa
       61 aggaatatat actatgcact atcatattat aatctaaaaa gaactggcac agctacaata
      121 aaatcatcct tttttgaaac ttgttctttg taaattatcc aaatgctaga gttgaggaga
      181 gcctttagtt ttttcacgtt ggcactgtaa accccctctt gttcgagact cacatatccc
      241 tcaacttctg tcaaaagcaa gaacaaattt cctaaccaaa actgaaaagt ccttggcttt
      301 tcaaatgact ataaattgca tggctaagtg catatggcca cagggctgtc acagttactt
      361 ttcctgacaa ttcatcatag catactaatt ctgtaatatc attactgtgt ctcttctcac
      421 tgtactgatc cagccagtta atttaatcaa ctaataatag attcagaaat ggatgcaaag
      481 ggccctagca cttcaaatta tattactaga gatgcacagc agtgaaaaca atgtattcta
      541 tacttgccat taaatataac cccagtaagc tatattcttt agttggagat ttttctttaa
      601 aaggaaaagt atttctacag atttagaaaa ggtgcagttt atttcaca
//
LOCUS       KCLJ01001080             615 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 120938cal ultra-conserved element locus
            uce-6087, sequence.
ACCESSION   KCLJ01001080
VERSION     KCLJ01001080.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 615)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 615)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..615
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="120938cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>615
                     /note="ultra-conserved element locus uce-6087"
BASE COUNT          182 a           84 c          115 g          234 t
ORIGIN      
        1 acagaagtct tgtgtaatat gggtataatt tttaattgtt tgcattattt tcaaagttca
       61 aattatcact ttgagattac tataaataca cttaaaatta tctattttaa attaagaaaa
      121 tattagagat attttcatgg gttcaatgac ctttcatttt ataagcaatg ggcatggtac
      181 agagtggctg tcatgtaagg tacttgaaga ttcttagttt aattctattt ttgcaataac
      241 cttgactttt ttttttgagt tgtgcatgta atgagtccag taaatgctga aaatggggaa
      301 gagtaaagta tttatctaaa ataaaagcta ttggggaggg gaaacaatga atgtatccat
      361 ctgtacatga tttacatgct gtggatgcct tgtaaacatt ttcctatttg tttaaactgt
      421 gtttcagcga ggatgtaatt gcccttgtgt gtagttttaa gctaatgaca gtcatcaact
      481 ggttttgtgt gaaattaaat tcatggtatt tttctgtaac tttatcccca tggtgagtct
      541 gtaaaaacca cacgctcttt catactgatg ccgaaggcca gcttttccag tcattttgat
      601 tcactgtgta tctga
//
LOCUS       KCLJ01001081             366 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 121049cal ultra-conserved element locus
            uce-6330, sequence.
ACCESSION   KCLJ01001081
VERSION     KCLJ01001081.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 366)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 366)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..366
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="121049cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>366
                     /note="ultra-conserved element locus uce-6330"
BASE COUNT          129 a           68 c           61 g          108 t
ORIGIN      
        1 gtgacacagc atgagagctt atggtatagt tatctgaaaa acttacccac tccctataac
       61 atgtttagat tgctttttta gactctataa aattttagca agcactaaac atagaacttc
      121 attcatcatc atgcaagcaa aggctgccaa aggaagccta ctcttcctga gctaaaagtg
      181 gcaacactcc agtattggca aaaatcaaat gaatcatttc ctgcttttag ttttagataa
      241 ataatcaaaa aagattgtct agagtctgat ccaaaagtaa tttttcatag caaggaataa
      301 aactgcagct acaaagactt taagtgggga atgttatcct gttaattact tgactggaaa
      361 ggccct
//
LOCUS       KCLJ01001082             749 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 121151cal ultra-conserved element locus
            uce-2518, sequence.
ACCESSION   KCLJ01001082
VERSION     KCLJ01001082.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 749)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 749)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..749
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="121151cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>749
                     /note="ultra-conserved element locus uce-2518"
BASE COUNT          122 a          220 c          250 g          157 t
ORIGIN      
        1 ccccagtgca tatgtgggtt tctacctctt ccgcagggaa ggatgctgtg ggaaggtgtc
       61 tccctagcag gcatgacctg gaaaattttc tctctgtcct cacagaaggg tcgaggatat
      121 atcctccctg cggtgccaga gtgcgtgggt agcatgtctc tgtgcatgcc cctctttctc
      181 tcctcctctg cagtgagtcc ctccagagga gaggaggtct cggggcactc tcacctgacc
      241 ttctcactct cagtcatttc ccaaagtccc aggttgagca ccttgaggca gggcagctgg
      301 gtgatgcgct ccaggccccg cttggtgatg cgggtgcagc cgtagaggtc gatgcccgtc
      361 agctggctga ggtgttcggc aatgagctcc aggcccttgt cggtgatgcg gacgcactgg
      421 ccgatgttga gggtgcgcag cccgtgcatc tgccgcacca tgcggttgat gccctcgtcg
      481 ctgatgtggc aggagcagag ggacagcgag cgcagcccgt cgaggccctg tgcgatgtag
      541 gctaggctct ggtcccccac cttgtcgcag aaggagacgt cgaggccgga cagccgcagg
      601 ctgcccatgg ccaggtgcat gatgcccgtg tcgctgatgt tgtcgcagga gcgcaggttg
      661 aggctccgca ggctgctcat gtgcgacagg tgcagcagcc ccgcgtccga gatgcccccg
      721 cagaagctga ggttgagctg gcggaggcg
//
LOCUS       KCLJ01001083             641 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 121263cal ultra-conserved element locus
            uce-6827, sequence.
ACCESSION   KCLJ01001083
VERSION     KCLJ01001083.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 641)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 641)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..641
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="121263cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>641
                     /note="ultra-conserved element locus uce-6827"
BASE COUNT          194 a          125 c          129 g          193 t
ORIGIN      
        1 aaatgcaatt gggctgctcg cactgtagtt tacaattaaa agcaaaaata tgacctgtgt
       61 ttttagttct gtcaatctta cgtttctcca atgagactgt gagaaaagat atgtgatcat
      121 ttctgacagt tcttggcagt tgggcaggca agcattggaa aggatctctc tctcctgatc
      181 caagattaaa tttggactga aacacagggc tcatttaggc agcaattaaa ggaccttata
      241 gactgaggga gaatgaaatg ataaatgcaa agaggcttat ttaatgggga tattaagtaa
      301 actgctggta aaaatgccca tttatcatcc actgattcct aattggtttc ctgttcctgc
      361 ctgcatgtgg cattttcaga aggaattacc ttcctttagt gcgactgttg caaatgcaat
      421 aaatcaaggc catagatttc tagctaattt agatggagac taaattggag ccaaagcatg
      481 taagagtgct tgcaattaat gttcattaca acttttagct tcggaaggat cattttaatg
      541 caccattccc aagcaaggac actgcttcaa gacttggcta ccctttgtca gctcaacaaa
      601 aatcactcgc ctttgtaagc cactggcctt cctgaaacct t
//
LOCUS       KCLJ01001084             807 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 121374cal ultra-conserved element locus
            uce-3, sequence.
ACCESSION   KCLJ01001084
VERSION     KCLJ01001084.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 807)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 807)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..807
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="121374cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>807
                     /note="ultra-conserved element locus uce-3"
BASE COUNT          261 a          144 c          183 g          219 t
ORIGIN      
        1 ctctgttccc tgcacacagc tgctattcaa aaaatacaag gagctttgca ttatcatttt
       61 taagctagca accgtagaac agcgcagaat agatgacaca cttactgtaa tgtcccatga
      121 agcaaagttc ccatctagag agagaggcac tcttattcca ctccctgcaa aagggttaac
      181 cattatgaag aaacattatg ccagacatta gcagacagcc tacttagata ttacattttt
      241 ccatacatga taaatcctga gtaaacctgt ttttcttttt aaacaccttg cagagtgaag
      301 cctagcactg catctagttg ccaaagcaca atcaatatgg aaggagcggt attttatgat
      361 tggagaagtt gttgtgtttt tggtggtgaa attcattatt tagtatctga accctcagca
      421 tttcagtatc atttattcat aaagtccctt tttgccagga ggaaatggat acagctgtag
      481 agagagagag tgcgagagag ggagagggag agggagtgag acggattgat gatattgatc
      541 aggtaccatc ttgaaacaaa ggctaggtgc tctattttag ttgacaactg tgacacataa
      601 aaaacaagca agagaggggg aaggctaggg ccttgaacat cacaggcttt aaaaagcgtt
      661 tgaagaaacc attatgacaa gcaggtctag gcaagctgct gcaaaaatgt attcagaaga
      721 gtcattaaaa aatgatgctt tgtttgcctt gtgaatatga ggtttgtagc tagctgcaga
      781 gcactctcct acagaggaaa tgatgag
//
LOCUS       KCLJ01001085             626 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 121486cal ultra-conserved element locus
            uce-5902, sequence.
ACCESSION   KCLJ01001085
VERSION     KCLJ01001085.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 626)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 626)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..626
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="121486cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>626
                     /note="ultra-conserved element locus uce-5902"
BASE COUNT          205 a          120 c           94 g          207 t
ORIGIN      
        1 tccagcctcc ttcaagatgt gctacctttt tataaatagc tcattatttt ggttttgatt
       61 caagaatagc taaagttgtt tctgaaggta gttcacacat tccctggcca gaatacagta
      121 gctgatattc gttccatcat gtgactggta caatgaactg tagtgggtca aatagtgatg
      181 actaataacc ctaataagac ttattctatg ttgaagctaa caaatccttt atcagtactt
      241 caaccattct gcttacgtgg cctcattgtt cagattatgc ttttcatcta tgggaactaa
      301 tccctttcat atacaatttt agcaagaagc ttataaaatg tgtattaaag catattgact
      361 tgtccaacaa taaaaagtac aattaggctt ccaacacaga gcattactaa tttgcataaa
      421 aacctctcta acccattcct tttactgcat aatataacca agaggttaca ttctgtacca
      481 cgcaccagta atttactgca aaatcagtag atagctgtac ctgtgtaata gtgttcactt
      541 tctttgtgca aatcttttaa aagtgaattg acatgccgaa tgtatcaata ggaaataata
      601 taaaagatca ttacactgaa tgatca
//
LOCUS       KCLJ01001086             537 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 121594cal ultra-conserved element locus
            uce-4518, sequence.
ACCESSION   KCLJ01001086
VERSION     KCLJ01001086.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 537)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 537)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..537
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="121594cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>537
                     /note="ultra-conserved element locus uce-4518"
BASE COUNT          168 a          120 c           83 g          166 t
ORIGIN      
        1 tttgagaagg tgcatctata ataatcctgc aagttttgaa atgtggcata ttattcagct
       61 gtagttcttt gatgtgtgtt tttccctcaa tccatgctcc aacaattctg tcatacagag
      121 aactgaaaat taagttattc tcaccagcaa tactagaatc tatcaaacca cagatataaa
      181 cctcagaaca atccctgcca ggtttctcat gcaaatgacg cagaaaaact tacaagggca
      241 ctttaagata ttgagaaccc ttcaatacaa cccagtataa taacttttac ttgctaattt
      301 ctatgggtca gttgcaaagg aatagacctg tcaatctttt tcagatgtag cagaatttgt
      361 ctgtctgcaa acagggatgc tttgttgttg ccatagatac taatcctcca ctttccttct
      421 gttgacacag ctagtcacac tctaaactac ctgatcacac ttttaatagg cagctgactc
      481 cagtaccata aaatgctcaa atcaagttca caacacttga tgcatccact gttgcat
//
LOCUS       KCLJ01001087             826 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 121706cal ultra-conserved element locus
            uce-4201, sequence.
ACCESSION   KCLJ01001087
VERSION     KCLJ01001087.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 826)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 826)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..826
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="121706cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>826
                     /note="ultra-conserved element locus uce-4201"
BASE COUNT          230 a          168 c          158 g          270 t
ORIGIN      
        1 agcaagatcc attttctttc ttttttacat gaaacataga aaaaacacaa gcgagacatt
       61 ttctgataga aacaggcaca tacatgcaaa gcatcaagct ggaatattta ttatccttaa
      121 ggaccaaacc ccaccaaaga gatttccagc ctaagagctt catggtctcc agctttcagt
      181 tactcattca ggatagctgc aggttcaaag tgccaggact gacttactgt gttaaggtat
      241 tcttaaagct ttctcttcct acactgccag actgaacgtc accctagaac tggtttgtaa
      301 ggtacaatga gagactgaac ctgccatgtg accaagatga catttttcat cctcaaagaa
      361 gccacatgta cctttctgac aaagctgtgt gaagtattag aatctgatgc tgtagaaaga
      421 tcctagttgc ctttgtgtat atttactgcc tgcttgagtg tttctctgtg tgggttttct
      481 ctgtatcttg tagaaatgtt tggggtgttt tatcctgcca tatcgctcgt ggcccgcgag
      541 ctgacaactt tagccgtatt ttaccttcat ttttgatgag gtggtttata ttttgtttca
      601 ctttgtgtag tgactcccca cagtagagtt ttccaattgt cgttaacata catattacac
      661 agatattcaa taaaaatgtt ttatttcctg ttgatgtttt ctcttttgat ctaaaatttt
      721 gaaaagacaa tatcacatac tttgaagtgt cacaagaata gcacagcgtt tcgaggggct
      781 gtgaaaagct gctttcatca gtaagacagt cacagccagc agcgct
//
LOCUS       KCLJ01001088             705 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 121926cal ultra-conserved element locus
            uce-2704, sequence.
ACCESSION   KCLJ01001088
VERSION     KCLJ01001088.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 705)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 705)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..705
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="121926cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>705
                     /note="ultra-conserved element locus uce-2704"
BASE COUNT          202 a          144 c          169 g          190 t
ORIGIN      
        1 aagctgctgt ttggacaaca tccatttgat aatgaagcaa gatgcaggct agacagctgc
       61 ttttttctca ctcatttcac tccgttattg gttaacttag tggaaaaatg taaattttcc
      121 agggacttta ggttggaggt atcccagcca aggtagatgt gtgcttgact tgaggtctaa
      181 tttaactcct gtgtcgtata gacccgcctg gcccaccagg gagcctcaga gccctcctct
      241 gccaaaggta gacaatgggt tgaaagtaaa gtgtaataaa tgcccctgtc cagtcccatg
      301 tcgatatcca gctgcttttt ttttgctgtt ttgagtgcat cagtatttca cgtttattgt
      361 agtgtgatga aacacctttc aggatggccg gagggacact cagcagcagg catttaggca
      421 gtacaaattg gagtgaacag gaggacagtt agcagggaat atttctgagg tcagagcgga
      481 ttggagctga atcagctgca gagttgagag ctgcagtacc tactgcaaag taaatatgga
      541 ttacattcct ttagacaaat tgatctgctg caggacgata gctctcccag aaaaagaggt
      601 tgctacataa atattttatg ctgacaaaga acccttaaaa acagcagcca gagatgtatc
      661 ctggagagcc catcccagat cctcacagga cagaaagatt taaag
//
LOCUS       KCLJ01001089             629 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 122036cal ultra-conserved element locus
            uce-7048, sequence.
ACCESSION   KCLJ01001089
VERSION     KCLJ01001089.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 629)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 629)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..629
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="122036cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>629
                     /note="ultra-conserved element locus uce-7048"
BASE COUNT          154 a          178 c          127 g          170 t
ORIGIN      
        1 gtgcacacat attctgagtt cttaacactt ctcattttct aactaagata attgaatgac
       61 tcagtgagca tggctggcat taaaatcttg ggggagggaa aagcagaggt agcaagctct
      121 aaatcctctg ccaaatcccc ttttcataat ttatagtctg tcaccagttt atcaccgaga
      181 actgtccctc tttttctcat tcgccaggct cctttcccag tggacagtcc atgccagctg
      241 tctcggcagc aggaacgtcc tttttttccc aagcctcgac ctgtgggaaa atcttcattg
      301 gccagtaatt gattccaccc tgccagctcc attactttag cccacagtca aactgccagc
      361 aggctggaga caggcagccc cagccctccc tgctcccgct attgagccgc tcctgccggc
      421 ctgagcccgg ctcgcagccc ctgtgtcagc ccgccctgca attagcacta atctgaaaat
      481 tggcctttgc tagcaaagcc aagcacctga cagctaattg ttgatgtcag attgatgtgc
      541 atttaatatg gaaaggttat ttatcaaaga gtacttattt tgtccctgta ttgccacagg
      601 cgcttacagc ccacagacca ataaagatc
//
LOCUS       KCLJ01001090             700 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 122145cal ultra-conserved element locus
            uce-5093, sequence.
ACCESSION   KCLJ01001090
VERSION     KCLJ01001090.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 700)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 700)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..700
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="122145cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>700
                     /note="ultra-conserved element locus uce-5093"
BASE COUNT          234 a          107 c          120 g          239 t
ORIGIN      
        1 aatgttaact ttttatacac agaagagctt gtgagcactt aggtctagag aagaaaccca
       61 caggcccctc cttacaccat ttattttttt gaactgagta gaaaatatgt ataagaaagt
      121 gcaactaaat atacttctga cagctcaaat gatacataaa tataagggct gacaagggtt
      181 ggtttgtcat tgtagttcac ttcgatcaac tctacatggt tctgtaggac aatgaaattc
      241 aatgcactta taatttccaa aaaagtgagc tcagattctt ttaaaagcat ttctatgtga
      301 aaacggatca tttacatgcc aaaagcactt ttaatgtgac atatttagca catgtattat
      361 tgagaacgaa agctgcttga acttagtgaa ttttaaagtc tataaaatgg caccctgctg
      421 agcagaaagg tagctgttca gtgaatttcc cagttatgtg attattttga ataatagact
      481 tgtacataac ttttttatga aattaaaggt atgacatttg ctttagttca gtcctgtaaa
      541 ttgcacttta gaacataaag aatgggctga tgtatgaatt tgttgttcct ccaagcaatt
      601 ttgctgattt tttaaagaac agttttatgt ttcatctatt gagtaacaca tcaaacagtt
      661 atcttagtag atttaatgag cattcatgta tatcttaaca
//
LOCUS       KCLJ01001091             553 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 122256cal ultra-conserved element locus
            uce-7946, sequence.
ACCESSION   KCLJ01001091
VERSION     KCLJ01001091.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 553)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 553)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..553
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="122256cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>553
                     /note="ultra-conserved element locus uce-7946"
BASE COUNT          128 a          156 c          120 g          149 t
ORIGIN      
        1 ggccatgatt atcacaacta attgcctcgt tgttagggag cagcctgaaa ctgtgttcag
       61 atgtccgtct gtggtagcaa attagggcca catcaggcta ttcctgccat cacaaggggc
      121 tcttgtcgag cgatctgatt taccctgcgc ctggcagcac tcggcccaat caaagccccc
      181 tctacaaagg cagctttgaa gccagcacag cctagaaacc cgctccatat gcaggccggc
      241 agactgcact tcattaggcc tgttgtcaca ttttccctct tcttattcta atgatcctat
      301 tttaatacac ataggaacct ctcctaattg atgtcaagtg agtgacttcc acattcatca
      361 ccggcgcaca tcaaacgcgg acccgaggca actatggaaa gcaggtattt cggcattacc
      421 tgtttaattg ggattgcacg gccgcttcca atgctgtctg ttctgctctc caggaccttc
      481 ttctctttgt ctgggtcact ccctttccga gactgcagag cgaaaagttt gtgctccatt
      541 gcacacagag gat
//
LOCUS       KCLJ01001092             654 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 122362cal ultra-conserved element locus
            uce-80, sequence.
ACCESSION   KCLJ01001092
VERSION     KCLJ01001092.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 654)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 654)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..654
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="122362cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>654
                     /note="ultra-conserved element locus uce-80"
BASE COUNT          215 a           95 c          111 g          233 t
ORIGIN      
        1 agattgattc ctaaacaaaa gaagggatgc attacacatt tttctagaga ggatataacc
       61 tcttaggtgt ctcctttatg tattttttta cccttagaag aaatagtact ttactaatat
      121 ttgagtgaga aagatagttg ttaaaaaaag aaattcatgc tgagaactgt tctagaaact
      181 tggatagata agtcagttga tggaaatgtt tctcactctc aaatctctag ttgaagttca
      241 tttgacaaac ctattataaa atgaataaat gtagctctgt gtgatttgtc cattgtcaac
      301 atgttaacac aatttatttg aaggtagatt gatgaaggat ggctgaagga gtttaccctc
      361 ctgagttaaa gaatagaaaa tcctttttcc ttagcatttc tctttttttc ttagaagttc
      421 acaagagtag atatacaatt atcctcgact tgctgatgca aaggaacaga gcatttagtt
      481 tcttgtcact gtctctgaaa ttcctaaagg tacaattagc atttcatttg acataatgtt
      541 gaaaggttca tagattgatc ttccctaaaa tgcagcaaga attttttgaa atgcaaattt
      601 tgacatttat taacttttat tccagatctg tttatagact gtaaaactgt gcat
//
LOCUS       KCLJ01001093             606 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 122473cal ultra-conserved element locus
            uce-5224, sequence.
ACCESSION   KCLJ01001093
VERSION     KCLJ01001093.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 606)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 606)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..606
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="122473cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>606
                     /note="ultra-conserved element locus uce-5224"
BASE COUNT          198 a          128 c          110 g          170 t
ORIGIN      
        1 aaatgcacta atttataagt tgaagcaagc cttgagataa tgtcacccac cattcatcca
       61 aatttgtcac tagcatccca ttaaagccat aattattttt taattaaaac taaggaagct
      121 ggcatgtgtg tgcctacttt atacatctgt tatgggttaa aatagctttt aaaaaatgtt
      181 tctttagacc gcagtctttt gtggccatgg cctatgccaa agaaaacgca aacttgctta
      241 ttttctccat ggggcgcaac actgcctatg tgtgcctgaa cagattcgac tggccgtgaa
      301 aagaattcta aataaaacac aaacatggaa tttggcaacg ccacagaagc gagcttaaga
      361 ctaattccag catgcggacg gctctcacac agcaagtctg gctccactat aaatgaaacc
      421 aggctctgta aaatcgccag taaagtttga gttaggattt aaagagacag cactcttatt
      481 ccaaggtcta agacacacac gtgcacgcac acacacagct tattaaggaa attcatgctg
      541 gctcagtaag tccaaactgt gtttattttc agcagtcatt tccattttaa aaaatgtgaa
      601 gtttaa
//
LOCUS       KCLJ01001094             642 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 122582cal ultra-conserved element locus
            uce-6152, sequence.
ACCESSION   KCLJ01001094
VERSION     KCLJ01001094.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 642)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 642)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..642
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="122582cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>642
                     /note="ultra-conserved element locus uce-6152"
BASE COUNT          212 a          116 c          104 g          210 t
ORIGIN      
        1 ccaagtctaa tgggttaaat gcttattata ccactgtctt atttgtaaca taaggcacct
       61 actataagcc tactcttcat gcaaaattgc caatttatag caatattcct tgtttagaaa
      121 acaaggctat ccaaacacta taattacaat atgcaccagc aggcataacc ctgcattaat
      181 gcacagactc cagatacatt cgtcaaatag agtttttttt ctctttgcct tcttctcagg
      241 gtacttttaa gttcagggac agagaacatg tcttcattag aaacattaac attcacaggc
      301 tgtagtaaat tttgacagtg aaaaggtctc tgtaaccttt agttgtgcag aaatttactt
      361 cccaagaaaa ttacagctgg cactgtctta attaatgcta gctttctttt ctgaaaattg
      421 tgggcttgtc agtaaaaaag gcagaaaaac ctgagtttaa aagactggac acaaaagacg
      481 cctagaaata aagccctgca aaatttcata atattgctct gtttttgttc tacagtaagg
      541 agatgaaaag atctaatttg attttgccaa atggagcaac atatatgtaa tatagaaatg
      601 atttgcattt tctcttttgt ctttgagttt catcatgtaa ag
//
LOCUS       KCLJ01001095             684 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 122695cal ultra-conserved element locus
            uce-5100, sequence.
ACCESSION   KCLJ01001095
VERSION     KCLJ01001095.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 684)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 684)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..684
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="122695cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>684
                     /note="ultra-conserved element locus uce-5100"
BASE COUNT          196 a          124 c          162 g          202 t
ORIGIN      
        1 caagccagat gggactggca gaggcatgtc aaggaagtgc tgaaaaggtg acttgggtct
       61 ctggcagcta gtctggagct catttctatg tgaaatctct gggggctcct gctttgcaat
      121 ttctcaggaa tgtttaattc tcctcatcct tttgctgagt ctctctggag aggtcatgga
      181 ggcctgtgac atccctggag ggcactgcct aactaaatta gcatgagata actttggact
      241 ctcttccaaa caagaaaata caagggagag aatttcatta aaagcagaag actaggtgat
      301 ccaagttaat cccagcccag agctgctgca gaaatgttct ctgtttatat tttgacttta
      361 ctctctgtta cagagttcac tgactataat ggaagctgtg ttaagtgcac aacttgacct
      421 cagttgacca aatcttagtt tcataataaa gaaaaagtgg gttaggcagc tctaaaaggt
      481 ctgattagtt actgttttgc ctgtgtgtga ttacgtaggg cactgagtga atggtaaaag
      541 ataagcactg atgtactaga tgagcttttt aatcaagaaa tatgaacaac actactataa
      601 tcatacgtgt gcaagtccca aacatgcatt tagttttctt tgggtttctt caatggatgc
      661 tgggacaagt tggagtagag ggaa
//
LOCUS       KCLJ01001096             520 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 122805cal ultra-conserved element locus
            uce-4172, sequence.
ACCESSION   KCLJ01001096
VERSION     KCLJ01001096.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 520)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 520)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..520
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="122805cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>520
                     /note="ultra-conserved element locus uce-4172"
BASE COUNT          152 a           95 c          127 g          146 t
ORIGIN      
        1 tgttccttac ttttaaaaca gagaggcaga cggggcaagt ttaaggcaag atgtggggaa
       61 aatctaacgc gaaggtagaa agaaaaattg agcttattta tacagtaaca cgtgagagta
      121 atgcctccct tcctcggcta tgcgctcccc catcttctct ctcacacacg tatatacaca
      181 cacactttaa ctgtgctttt gtgttttgtc agaattaatg agaaaagttc ccttgcccta
      241 ggggtaatta gtgtccttgg agttaaataa gctaatactt agacacctct ggcacaggca
      301 attatgtttg tgtattgaat aattgattca aagagggggg gaaggggctg ctaatcagat
      361 ctgagcataa tgaattgatt taattaacag gggaatctga gggtccctgg gaaatgtgtg
      421 catttattca gcagcaggag agagtgcaaa gcacataaat tgagcgagcg aggcaggcgg
      481 caagtgcttt tgctttcagt gataggttca catctttcct
//
LOCUS       KCLJ01001097             398 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 122914cal ultra-conserved element locus
            uce-4394, sequence.
ACCESSION   KCLJ01001097
VERSION     KCLJ01001097.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 398)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 398)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..398
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="122914cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>398
                     /note="ultra-conserved element locus uce-4394"
BASE COUNT          147 a           59 c           73 g          119 t
ORIGIN      
        1 ttatcctgtc atttaaaact caaaatcaat ctgagttacc ttaagtggca atactatgtc
       61 tttaatcctt gattcatttg ttgtgaaata tagtcaaaat aataatttgt aagggaaatt
      121 tgaaaatatc agatagtaaa tgcatatttt acttatttta atgtttgttg atttgaggct
      181 ttgagggcaa cacagtaaat attcagtttg gctggcacaa actgtgcagg aatctaatag
      241 aaagcaatat tgttgaaaat ggatatcaat tgaaaacaga gagcagtgtc aactattccc
      301 cactgggagc agacaacaat aaaaccagtc aagcactaca cagttgagcc tgccaaatgt
      361 cattagagtg tagaaaaaaa gtataggcac atacgaag
//
LOCUS       KCLJ01001098             717 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 123024cal ultra-conserved element locus
            uce-7500, sequence.
ACCESSION   KCLJ01001098
VERSION     KCLJ01001098.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 717)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 717)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..717
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="123024cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>717
                     /note="ultra-conserved element locus uce-7500"
BASE COUNT          225 a          131 c          112 g          249 t
ORIGIN      
        1 tttattaata aataaagtat gagttaaatc cttttaccaa catagtggca ttttttccag
       61 ttcaaacaga tacggtccta attgcataat gccattttat ctgctgaaga taaaagtgcc
      121 gataaaaatg cacattaggc aggagatttt tcagaataga tttttttttc aaataaccca
      181 cttgcattaa caaaagattg caatggcttc caaattatag ggtgttattt ttagtggaag
      241 tagttcaata ttcatattgg agcagatgta gcagtttaac aaaacagctc ttcaaatcct
      301 gcacaaattg aaaacaggaa aactgattgc attttctctt atcactttcc ttttctgaat
      361 tgacactttt ggccttctga aaatttacac atggctttca tctcaacagc acctgctgat
      421 caaacagaaa cctaacattt tcaggaaaat ggtataaagg actagttttc tttttaccat
      481 cttaaagggc atcggcagtc cacttgatgg caacaattgc tgagtagatg acacacaaaa
      541 tacattttat attttcagtc cacttacttt taaaattagt ttcttctgta tttgctcttt
      601 gtctgcttta aattaatttc tatctctgcg ttaccctgtt tcattctaca gtcagctaga
      661 ttttaaagat gatgtgaaag cctctgaaat aagcatgctc tgcagacagg ggtcttc
//
LOCUS       KCLJ01001099             419 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 123135cal ultra-conserved element locus
            uce-7021, sequence.
ACCESSION   KCLJ01001099
VERSION     KCLJ01001099.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 419)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 419)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..419
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="123135cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>419
                     /note="ultra-conserved element locus uce-7021"
BASE COUNT          141 a           87 c           75 g          116 t
ORIGIN      
        1 acaaagtcac tggccaactc actcttcact ccactcctca acagagctgt taggaatgaa
       61 gaggaaaata ttaactgaaa accagattta agcaatatgg aaggagttag actccttttg
      121 tttttccaac taatactctt gcacagctta aaattatcct gacagaaaaa caatcgaggc
      181 agcttttaaa ctaatgacac aatcccatgg ataatttccc ctaaatagca cagagatgtg
      241 actgaatgat cctatatatc attgtgggaa gcaattttcc tcaatgagtt ctacctactg
      301 gatattgcaa tgcattacag agtgagtgaa atcagattca aactggcttt ggagcaaaac
      361 ttaaaccctg agggtggaga gccatgatta taccctttga ttcacaggtt ccacatgtt
//
LOCUS       KCLJ01001100            1007 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 123243cal ultra-conserved element locus
            uce-717, sequence.
ACCESSION   KCLJ01001100
VERSION     KCLJ01001100.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 1007)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1007)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1007
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="123243cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>1007
                     /note="ultra-conserved element locus uce-717"
BASE COUNT          313 a          200 c          187 g          307 t
ORIGIN      
        1 tgacacctca atatatagca aaggacaccc tgaaatggtc attgctattt caaatgaatg
       61 acatcagtac accacattgt gaaaaggaat tatccacaaa accaaggcat ttgaaagctg
      121 aacttccaca tagttatggg attttatgca gctgagaaac tgatagcaat aggaaataac
      181 tccatgcagt gttttacatg gacatgtttg aattacacat acaacaagag ccttccattg
      241 ttcactctgc tagtgtgagt atataatttt cccgctgtct ttttcttttg ttcttttcag
      301 ctattttgtg attaacaccg tctggggaag aatttcagta ttttctctgg tttagcagga
      361 tgtgagcgag gtggtactgc tgcatgaatc ttttaaaagc agcctaagaa atatttaaga
      421 ccttagtcta ggaggaacag ctctcccagg cataattttt ggtgctggtt gcagcaggga
      481 gcgtatgctg tgaggaaagt attatttttc taaatggaag gtgtcagatg gtcacgcaat
      541 gtgactgcat gttcgagatc actgcctccc atctgcaatt tgtgacgtgt gaaagattct
      601 gcccaaatgt gctcaccaac tggaaaccct cggcactttt tttttcttat caggagagac
      661 caagataacc aatggtttta cagatcaggg atcctatcaa attaatatca ttctaggata
      721 aaatctgctt taaatacaac cactaaactc cagcaaagtt aactagtaca tacaagttca
      781 ttcaactgat taaaaatccc tactagtaaa acaagaaaat atacatggac aagaaaagta
      841 ttctgctcct atcttttagc tgaaggaaaa catgacagtc ttttccagca ctaattaatg
      901 ccacctaatt ataacactta ctaggctcaa gccaggcatt aatatattgt gaatagtttc
      961 tccttgtcca gcttcccgct ggatcacaca agatgattgc tttttgc
//
LOCUS       KCLJ01001101             707 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 123355cal ultra-conserved element locus
            uce-1359, sequence.
ACCESSION   KCLJ01001101
VERSION     KCLJ01001101.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 707)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 707)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..707
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="123355cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>707
                     /note="ultra-conserved element locus uce-1359"
BASE COUNT          206 a          139 c          140 g          222 t
ORIGIN      
        1 aggtgactcc tggacaggcc atgccgtaga taatgttgag cagccaggtt tctgcattaa
       61 tgtacgggta ctaaacatta ttcaggatcc attatatatt tatccttata gtcctttgtg
      121 gaaaatgatt tctgtaagta ccctgttacg gttatgaaag cctaaataag catcagtctc
      181 aaaccctttg acctgtctgc acagaatgga gatctgtttt gaaaaggact cctttatatc
      241 tgtttttact ccatgccctt ccattcattt gcctatacaa agcaataaag ggtaaaacca
      301 aagtaacata aattggtctg tcttcctgaa tccatgtctc gctaatgtac ccagattaac
      361 tcaactgtaa attgtctcct ttggatgtcg tgtcttgcta aaagtttcct atatgattca
      421 tgatttggat tgcttttaac agctattggc taagcaatat ggtaaatgta caaggtgatg
      481 caattggcat tagtgagagg atgcacagga gcatgtaatg cagtcaatac tgcattaact
      541 actgatgccc aattacagaa actggaagag tggcttttag gagcattagg acttgcagaa
      601 gagctgagat cacctgccgc tccttgccta aaagcttcac cctttacgcg ctgggatcaa
      661 agcaaacatt tagttgctat tttgtcatgt ataacaacta aggtatt
//
LOCUS       KCLJ01001102             719 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 123468cal ultra-conserved element locus
            uce-6432, sequence.
ACCESSION   KCLJ01001102
VERSION     KCLJ01001102.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 719)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 719)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..719
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="123468cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>719
                     /note="ultra-conserved element locus uce-6432"
BASE COUNT          235 a          166 c          124 g          194 t
ORIGIN      
        1 atgttcttcc tgcataaatg cactcatttc actgtatgct cctggcctat catggtttaa
       61 attgatagtg tccctcgaaa aatcaaggaa ctcaaaccaa gttattcttc gcacatacat
      121 gaaaaactct cttgctggag ggtcacttaa atgtctgtta ttttaaccaa gtcaatcaag
      181 ccctacctac acaactgctg tggttatacg tttccttaga catactgcat acaatttata
      241 tatgtgtata cacatatact caaatatgga acaaacagat tgcagcctca atcctatcaa
      301 aacttaccca agggtgttgc ctgccagtct gcccagagtt tcagaaccag acagaaacca
      361 tggggagtca ctagtcctgc ctggcctgga tgtccttcct gcccctgagc cactgctcaa
      421 ctttgaactg aaagtaaaag atggtaaatc agtcacaaaa caatcccaaa tgggttaaga
      481 acaaaacctg gaatcccagg ttgaaattct cagggactta gtctggtaac ataccagctt
      541 aagcaacacc cttggggaat attccaaact aatctaactg taaaagtgga aagcatgcct
      601 aacagacctt acgtacatca gcaatccata atagcacaga tgcaaataca tattaagcta
      661 attagagtta gccactgtgc taaagtatat gtacaaattg taatcagcag gtgttctat
//
LOCUS       KCLJ01001103             801 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 123580cal ultra-conserved element locus
            uce-1206, sequence.
ACCESSION   KCLJ01001103
VERSION     KCLJ01001103.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 801)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 801)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..801
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="123580cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>801
                     /note="ultra-conserved element locus uce-1206"
BASE COUNT          266 a          144 c          173 g          218 t
ORIGIN      
        1 aataagctaa ttcagatcaa gctgccgtgt cactttgtgc atgactggta catacaaaga
       61 tccattttgc cttgaattta ggcggaaatt ttctaaacaa actgttacat tccttggaca
      121 aagaagctta acacttgcag catgataaca gctgaagcat gccaacaaaa agctgtgtta
      181 acattcatgt tgtctgaaac ttaacacagt aaaactttta gcaatcggtg ataaaatgaa
      241 aaccaaaata gactgaaaca agtggaaaat tcatcaaggt ctgatgatgc aatgtttcca
      301 gccaatataa gtatacttta acaacttgtt ctttactgta atccaattgt taacatactg
      361 aaacaatttt ggggcagctc ataagattga tcgtattcat tagtattttt tctgacagat
      421 actcaggacg ttacatttac ttctcagctg gaaactatat gcaagtctgc cagatatggc
      481 aaactgcgag tgtttgggga gggggaggct ataaagctgt taaattgcct acggttctga
      541 tacagcacag aacatctggt ctggagagct tgaggaaaca ccattaaata ggcagaaaag
      601 aaaaaaatct ttgtgctaag aaacagtcca ggttttgtat gcttctgtca gaggtataaa
      661 aaaacttggc aattcgtgtg atgattggtc agtcacgtac agagccagac acgctagcaa
      721 gcggggtttg ttagacatct ggtcgggttc caccagcccc ttccacgagg gaggggagat
      781 gaaggaataa aaatgaagca g
//
LOCUS       KCLJ01001104             629 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 123692cal ultra-conserved element locus
            uce-5331, sequence.
ACCESSION   KCLJ01001104
VERSION     KCLJ01001104.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 629)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 629)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..629
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="123692cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>629
                     /note="ultra-conserved element locus uce-5331"
BASE COUNT          177 a          136 c          171 g          145 t
ORIGIN      
        1 agttgagcaa gaggaattgt gagatgcagt gagaaataag gcctttaaac atgttcagaa
       61 gagctgagag agtcccagca ggctggagaa cggcggcaca aggacacaaa cagctcggga
      121 tggagaagga gggaaacagc aatcacagcg ccgaatcccg gaaggggcgc ggggaagtgg
      181 tcacaggtga ttgtcatgtg tgataattat tattactgta cacctgctcc tccgcactaa
      241 ttaactttgg atatgcaaat caatcctatt gcatcatgcc cctgctctcc tcccctacag
      301 ataagaagat gttcagctgc tggatttaat taggataatg aacggcaggc ccactgtggc
      361 ttggcagggg aggagagggg ggagaagctg tgactgacct tttctcccaa aacgttgaca
      421 ttttctatag cttctgagca ctccgagtca cctccatggc tgggacgttg ataggagcgg
      481 attgatgagg tgtcattaga ggagaaacac catggcccca gtgtttgctg ggagaataca
      541 gcaggtgttc tgacaaggac acaagccatc actgttattt gccaaacaat tctcttgatt
      601 cactaaagtc aagcacgcca gcatttctt
//
LOCUS       KCLJ01001105             720 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 123801cal ultra-conserved element locus
            uce-3656, sequence.
ACCESSION   KCLJ01001105
VERSION     KCLJ01001105.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 720)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 720)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..720
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="123801cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>720
                     /note="ultra-conserved element locus uce-3656"
BASE COUNT          237 a          114 c          128 g          241 t
ORIGIN      
        1 gtggcaaata tagaaaataa aacagggggt agagctctgc aaatggtaat atgcattaaa
       61 atattatttt aaaaaaatct gttctaagaa ggcaaatatc tttgttttat aggtctctgg
      121 ccatctgaag aagtgctggc ttactactgc ctaaagcata atgaaatatt caggtacaga
      181 gttaaacatt tttccaatct cttagtttta ttgtatctgc atggtaattg ctatgattta
      241 agtcttcaga ttaaatttaa aatgttcaag gtgaaagcat gttgctctta acaaagaatt
      301 ctcagctgcc tttgggtact aatattgcac agcaagcttt ctgctatatg tcaaagactt
      361 ttgatttcca ctcaaggcgt tttatttcac tttgattttt gggaaacaaa agtgaagctc
      421 caatcgatcg gtgctgattg tgaaggtcag gaaaaataag atattcttta aactgacatc
      481 tgttgcaaaa gcaagcaaaa tattatctga tgaaatacat aaaaatcact gcttatagtg
      541 agaggaattt gcacccattt ttaaatgttg tgaaacagtt ttgaaacatc cttaaacttg
      601 tagaagtcag ctatcaagac ttctaaatat aaaatctgtc ctgcatcctt ccttccccct
      661 gactatacta aattttgcac ttggaaatcc ttgaagtttc attgtttggg ggatgaatag
//
LOCUS       KCLJ01001106             682 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 123913cal ultra-conserved element locus
            uce-234, sequence.
ACCESSION   KCLJ01001106
VERSION     KCLJ01001106.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 682)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 682)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..682
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="123913cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>682
                     /note="ultra-conserved element locus uce-234"
BASE COUNT          245 a          103 c          123 g          211 t
ORIGIN      
        1 aatcactttg actgtaatat cagtaaatct aaaaattctc tggccatatt taacccctgt
       61 ctgcgataat gtaatgtgga aaataaaagc tagttcctgt aggaagtaaa agagatctct
      121 tctgcagcaa attccggaac ttcttaatta tacacagact tattatctgc attcccagtg
      181 ttataaagta ccagaacttc attagaaaaa ttaagatgga aaaatgaagg cgctactttg
      241 taaatttcca gtggaaatta gctggaagaa gcagaggaat actggatcaa aagagggtaa
      301 tcatgcttaa ctgtgcccta gagcacccgc atgtataata cgatttgcac agtaactacc
      361 tctcctatta ctgcttgttt ggagtattct gtgttaatgg ggttagctaa tttagtattt
      421 taacttaaaa agactctgct gattaataaa tgttgcacac tgtgctagta attaaaataa
      481 atggaagagt tacaaataga agttgaattg ttaagaaaac attatctgaa aatatatgat
      541 aatccctgtt tatcataata caataacagt ccggaaaata tgctaattgc tgaagttgca
      601 aagcatatga caaactaagt ataatttgaa aaaagttttc agatgtgctg tgtttgtatg
      661 acaaaaaatg tagcggccat tt
//
LOCUS       KCLJ01001107             623 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 124023cal ultra-conserved element locus
            uce-861, sequence.
ACCESSION   KCLJ01001107
VERSION     KCLJ01001107.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 623)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 623)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..623
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="124023cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>623
                     /note="ultra-conserved element locus uce-861"
BASE COUNT          198 a          120 c          119 g          186 t
ORIGIN      
        1 gtcaaaatca ctgttaacat gaaagttttt tacctttatt ttcaatatgg catttttgca
       61 tgggaatgcc ctacaagacc ctcaacagca cgtttgccca gaagtgctct aattaactgt
      121 accaaatggc ctactccact gtcatgttaa tgccttctat ctggctgttt gctggccatc
      181 atgtatcatt gttcagcaaa tgacagcagt caggttatta aaggtgtaga tattaaatta
      241 acagcagtgg taaacattgt agctgtactt cacatctcag cagagccaat gaagtggatg
      301 acactgcatc catgctgata tgctgcaatg acagatgggc gtcatttaac acaatacatc
      361 agtgggcaac ccacgtacca cagctgtcct ccactaaatg aattagatct gggtaattaa
      421 tctaaggcag aaagtattac taaagtgggt cctaagcgga attagaaacg aataaaatat
      481 cctgttaggc tcattgcagc atgagtgtgg aaattattat taagtatttt aatttgacac
      541 acatgtctta gtgtgaagga tatataatag gcaccttttt tgtcaccagg aaagcaatat
      601 ttgatactaa gaaaatccta tca
//
LOCUS       KCLJ01001108             503 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 124135cal ultra-conserved element locus
            uce-7046, sequence.
ACCESSION   KCLJ01001108
VERSION     KCLJ01001108.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 503)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 503)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..503
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="124135cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>503
                     /note="ultra-conserved element locus uce-7046"
BASE COUNT          166 a           78 c           82 g          177 t
ORIGIN      
        1 tagtttatca agcagaaatt tcaagtacgt aatttcagtc taccaatgat tggattttta
       61 acttacatca tttattgcta agaatcttag cagtgatgag gataagcaat gtagcataac
      121 acattgattt tatgcagatc atcaccttta tgttttggga ggtctgctgt attagtgata
      181 tataaaaact gattactttc tccaacattg cctagtaatt gtttattatt ttcctattag
      241 acaaacaaga cagatcaata ttcctgaaca ccaaccagac tatgagtaac atcactgtaa
      301 atagatttgc ctcagacctc agtggtgtat tcattttaat gatttagaca atgtgagtcc
      361 aatgacaaag cgctcaagct aagtttaaaa ttaaattaag aataggaatt gcttgctttg
      421 ttcctttact aattgatagg gccttgtttc tttgctgtta gttcctagaa aatagcataa
      481 aaataggtaa aatgttattt gca
//
LOCUS       KCLJ01001109             607 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 124243cal ultra-conserved element locus
            uce-4525, sequence.
ACCESSION   KCLJ01001109
VERSION     KCLJ01001109.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 607)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 607)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..607
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="124243cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>607
                     /note="ultra-conserved element locus uce-4525"
BASE COUNT          182 a          125 c          119 g          181 t
ORIGIN      
        1 cctttggctg acacccaacg aggctattag tttaaccatg ggatgcacta ccaaatgtac
       61 aagagtcagc agaacttttc cttctgaaaa ttgcttgtaa ctttctgtga agaagccttc
      121 gaaagcccag aaagaataga cggaaaaatc aggcaacaag gggctgactt attggcttcc
      181 gataactggc atggcttcag cttccagttt cttttcaaca atgtccgctc actatagcaa
      241 ccccagatcc catttaaatg tcatgctgcc ctctgttcta taaacatgta tcatccatca
      301 ctaaatattt agatctgaat tgttggagct gagttctgtg ccaggggtaa ggggattaat
      361 tcctttcaag gccctcacat gatggatttt tcactgaagt aaacatccga gaagagctca
      421 cactacggcc ataaaatata taaataaagt ttaaagttta attaagtcaa cattatttaa
      481 agtggttgtc atattttatg gtgaactctc tgtgtttatt ttgtatgact cctcataaat
      541 agtctctccc tttcagacaa aaggcacggc tgggttaaag ttaagggtcc caagcatggt
      601 atgggaa
//
LOCUS       KCLJ01001110             480 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 124352cal ultra-conserved element locus
            uce-1488, sequence.
ACCESSION   KCLJ01001110
VERSION     KCLJ01001110.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 480)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 480)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..480
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="124352cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>480
                     /note="ultra-conserved element locus uce-1488"
BASE COUNT          167 a           99 c           83 g          131 t
ORIGIN      
        1 ttccaatctg tacttcaagg cacatgcacg tgcctgcaca agcacacgct gaccctgatt
       61 tacaattaag acaaaatagc aggctggtga caaaactcag caatttccaa ttgcacagtc
      121 accctgtaac gggaagaact gtttacccca tgttccttat taaactgaag tattttattt
      181 aatgagcatg actcatgcaa ggtgttccca taaatcatca gctggtttac aaactcaata
      241 actaggcttc ctgctataac taggctgtgc acaccttaaa ttattaacac gccagggcct
      301 taaggcagat ctttgatgat gatgatataa acactgtgag gacaaggtgc tctctcagca
      361 aaagattatt gactctaatt accatttacc acaggaaaaa gaaaagaaaa gacaataaaa
      421 tatgagggag aatttaaatc tcagatttaa ttttatgagg agttttaaac tcccaaaatt
//
LOCUS       KCLJ01001111             439 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 124460cal ultra-conserved element locus
            uce-2850, sequence.
ACCESSION   KCLJ01001111
VERSION     KCLJ01001111.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 439)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 439)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..439
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="124460cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>439
                     /note="ultra-conserved element locus uce-2850"
BASE COUNT          133 a           85 c          101 g          120 t
ORIGIN      
        1 gtatgtgtgt gccgggagca cacagacggg ctactcacgt ttgcagccgt aaataactta
       61 gaagccgctt ttaaaaaccg caggttaaag gatgagggct gccatgacgc acacagaggt
      121 tgagatcaga ggagcagcta agaggggtca ggagaaacaa tgaatcccct tgttctgagt
      181 catatttatg agtggtccat tgcacctaaa gttcatattt attggctagg ccatagggtt
      241 tccctatttg ctcatctctt aaaataacac ccctggttaa aatttcctat aaaacacaga
      301 aatgctacag caggcagaac ttgtcaaccc tgacaactac attatttaag tttgtgggtg
      361 gggtacacca agcaagaact ggtttgtgtt ttgtactgaa ttatgaattt ttctgtacaa
      421 aacatgactg taatagaag
//
LOCUS       KCLJ01001112             658 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 124566cal ultra-conserved element locus
            uce-1378, sequence.
ACCESSION   KCLJ01001112
VERSION     KCLJ01001112.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 658)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 658)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..658
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="124566cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>658
                     /note="ultra-conserved element locus uce-1378"
BASE COUNT          181 a          138 c           99 g          240 t
ORIGIN      
        1 ttactgtcct ttttcaactc aaggtccttg tgttaggttg cagaacagta cctactatga
       61 ccaattatat tattcacttg agccactgta ggatttatag cacgccaccg tgttttgttc
      121 attcttgctc tttccttcac catctctctg aaaataattg tttcatggct gtatgctctt
      181 attgctgaga tatgactgaa aactgcatgc agtacagtga agcacattca ttttcatcta
      241 gtacccgttt attgccttga gcactgtaaa tctgtcagct cttcacgatg ctttcacctc
      301 tttcttcatt tgctccagct tctagtttga caatgttccc ctgaggcaga attctaatct
      361 gcttccaatt agttgcaaaa tgtgactcaa atttccacat tatggccgca cacatctaga
      421 aacaaattaa tgctcttgaa tatttatttt tgagccttca gatttagaaa atttgccaac
      481 tacattcaaa ctacatccag gattttttct caaagtgaaa tatatctttt tcaaatgctt
      541 ttcacaaacc cttttcaact ggttggtaat tattgagggt acattgtatt gcgataaatt
      601 aaacaagtta acaatacaca taatttttaa atatggatgt gactgctgtg tcagttca
//
LOCUS       KCLJ01001113             428 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 124675cal ultra-conserved element locus
            uce-7191, sequence.
ACCESSION   KCLJ01001113
VERSION     KCLJ01001113.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 428)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 428)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..428
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="124675cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>428
                     /note="ultra-conserved element locus uce-7191"
BASE COUNT          137 a           85 c           74 g          132 t
ORIGIN      
        1 atattcatgg aaaatgtgca gtgtcctttc ttttgctcta atcctctgta ttacctgtac
       61 aaagaacaag gatttgcacg ccccctcttt ttttttggct tatctatgct gcagtcctac
      121 tgtcattgtt tgattctgct taaatccctc tgtacctaaa ggtacagcct tatcaattga
      181 aaagctaatg ctatataaga agtgaaaaga acacagaaag gtttcctagc aactactgtg
      241 aatccttcta aagtaagtca gttaaaacca tgtagtacgt gcaaggggtg taaattaggg
      301 agctaagctg atcctcagat ttacagatgc ccactataaa gtacaataaa acccctaata
      361 gaaggtgaat tgctcaagaa gaaaatcaca tcagtcttga cagctttatc attatttaaa
      421 tgatccag
//
LOCUS       KCLJ01001114             518 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 124776cal ultra-conserved element locus
            uce-4990, sequence.
ACCESSION   KCLJ01001114
VERSION     KCLJ01001114.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 518)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 518)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..518
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="124776cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>518
                     /note="ultra-conserved element locus uce-4990"
BASE COUNT          172 a          101 c           96 g          149 t
ORIGIN      
        1 aaccgtagct ctgaacaaaa atggcattgc tttgggtgtt tacagcactg gagcactcct
       61 tggtttgtca ctgtgtttaa ccactgctct aaagccagca aagtacatta ctggtagtaa
      121 cagctcatga aaaatacagc gaagaaactg ctagtggcag aagcatttaa ctttcttgtt
      181 agcagcctcc cccatgtggc actttagcac cagcaagttg tttattatgt tctgtgccag
      241 gcaaaactga ttaaatgggg ctcttaagaa tcaaagcgtt ataaattcat ggaaatacag
      301 caagcaataa attccatgga attaaaagct tactagtgct attagcattt cagggtgttt
      361 gcattgttaa tagtgatgtg caaaaatgat gttcctataa gacaaggcaa accaacagaa
      421 catatgcttt agctgctaca tttttatacc atgtcatcat caatggcaat tataaaaagc
      481 tcattaataa actgaatcaa accaaggatt tacatccc
//
LOCUS       KCLJ01001115             432 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 124881cal ultra-conserved element locus
            uce-7324, sequence.
ACCESSION   KCLJ01001115
VERSION     KCLJ01001115.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 432)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 432)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..432
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="124881cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>432
                     /note="ultra-conserved element locus uce-7324"
BASE COUNT          150 a           82 c           72 g          128 t
ORIGIN      
        1 aggccaaagg agcccggccc tctacatccc cagtttacag tggtatatat ttgcttatgt
       61 attacctaat attacaggaa gcaacacaag gaagtatatt ttgtgctaaa attgggaatg
      121 cactttcaaa tatacttaac aaggaaattg aatgtcttat taaatccgta ttatcaaaac
      181 actgttcaaa aatttaaaga aagtagcttt tcattttatt catcgaggaa tccattaaag
      241 cctaagctct gaagtagtat gtaaattatg tgcctttcaa ggtagagcta gggcaaattc
      301 actccatcaa ctaatgatga acctcattat gtgcagggag tattcataat gaggaaacaa
      361 gccacccgcc attccatgtt ctaacataaa tccctgtaaa atgtgaatat ctccacgtct
      421 aattaaaggc ta
//
LOCUS       KCLJ01001116             544 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 124992cal ultra-conserved element locus
            uce-3811, sequence.
ACCESSION   KCLJ01001116
VERSION     KCLJ01001116.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 544)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 544)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..544
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="124992cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>544
                     /note="ultra-conserved element locus uce-3811"
BASE COUNT          169 a           91 c          105 g          179 t
ORIGIN      
        1 ccatgctggg taacacttga taattaccca caacaaaagt agacacacaa tgctggtaaa
       61 ttacctgacc ctttgcattt taatgagaca acaaggattt catgaagtga tgttgtttca
      121 gtggttaatg gtgtcagcaa tgtaattgta ggctgaggca cattagctgc acaaccacat
      181 gtaggaaggg tttctctcaa caggcccttt ggagaataga atagggtatt atcattaagc
      241 ctatgtcatt tgcatgctgc taatcactta ctttattatc ttgtgtatcc attgtcttgc
      301 tttaattgct ctttaaatga aaattaaaaa tagttccagt gcccacgata cttgtgatag
      361 cgtcttgatt atgaagataa cttcaagaaa atggaacata tagataatat attgcaggaa
      421 tacaagatag tttgaaagta atgtaccaca gcaggcagcc tcatgagcgt aattctggtg
      481 tctttctttg cttcactacg tattgtttgc ttaataaatg gttatttata ttcataaagg
      541 tgat
//
LOCUS       KCLJ01001117             739 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 125099cal ultra-conserved element locus
            uce-660, sequence.
ACCESSION   KCLJ01001117
VERSION     KCLJ01001117.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 739)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 739)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..739
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="125099cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>739
                     /note="ultra-conserved element locus uce-660"
BASE COUNT          233 a          154 c          124 g          228 t
ORIGIN      
        1 ctgcatactt ctttctttcc tgcaaatatt tctgcagcca agtcaaatag actgacacat
       61 gctaagaaag gggcagtttc tacccaagga ggagaaaacg ttctttactt ttgaggactg
      121 acatgtcctc atatgataaa catgtcaaaa gtgttaccta acattgttgt ctgcatcgca
      181 atctgtctcc cagtaactct gtctgagtag cagtaataga attaattata cttcattttg
      241 ctgtctttaa cagtattgac caaatttaag aacaaatgag aagcgcttat caagcttgaa
      301 gaaaataatc catcagtggc acaatttaaa ttctctgcag ttctcttatt aatcaaagta
      361 acacttacta tcctatcttc acttcccatt aacagtcatt aagcactgtt gctgattgaa
      421 gcaatttctt tagggatctc aacctcattt ttaagagaac cttctacagt ggaaaacaat
      481 atcatacagg aacagcgact tcaagagagg aagaaggttc ttcaatcatg ttctgacctt
      541 gacgtttccc tgcagcagaa gttcactaag tacacaacca acatgctcta aacttctgac
      601 ttcattctta cagcagcacc agtgctcctg tattaatcag ggaggaaaac atcacttcaa
      661 aagatggtta tagcaagcag gttaagtgtc tttaattatt gtactggcct gcattggtga
      721 ttaatattta cagagcctt
//
LOCUS       KCLJ01001118             484 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 125212cal ultra-conserved element locus
            uce-2388, sequence.
ACCESSION   KCLJ01001118
VERSION     KCLJ01001118.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 484)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 484)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..484
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="125212cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>484
                     /note="ultra-conserved element locus uce-2388"
BASE COUNT          137 a           94 c           96 g          157 t
ORIGIN      
        1 gttaaacttt gaacttcaat ctgaatttcc tgcacagcca ttttagggca tggattaaat
       61 tgcaaaatcc tataacaatg aggtacctaa cagaagtact ttctctgcaa ccagtaggcg
      121 tgaaaattag cagctgccag actaagaggt ttattattta tcttccctgt tgcagtgtcc
      181 atgtggcagc actgatattg agcagctgga cagattgcac cctggagcca catctgtagc
      241 tatatagatc aacaccactt tcattgcctc tttatcttct gtcgttagat ttactaccta
      301 cttcatgaat tgttaaggat tttcctttcc tctcctccaa tttgattttg aaagcatgct
      361 actgtaatct ggtacagctg attgattgag tatttgcatt aatagggatt tccagttggg
      421 tttgcaaaga tggatctgga atggtgaaaa gaataaacat gactgctcaa tgaaactggg
      481 aagt
//
LOCUS       KCLJ01001119             838 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 125322cal ultra-conserved element locus
            uce-3926, sequence.
ACCESSION   KCLJ01001119
VERSION     KCLJ01001119.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 838)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 838)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..838
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="125322cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>838
                     /note="ultra-conserved element locus uce-3926"
BASE COUNT          262 a          137 c          155 g          284 t
ORIGIN      
        1 tgcacaggaa accagagcag tttctgatct ctcctccacc taaaaaatta gaacatcaaa
       61 accagtttta ccagcaataa acgaagctac tttgaaaagt gaggcaaagg gatctatctg
      121 gagtcagtaa gacattgtta ggatctcttt gatcgggagc cttaaatgaa aattatcaaa
      181 tggcgcttta aaacatacac ccttttgttt gattagcctg ctgcagataa cctttattaa
      241 acctgatcta aaattacagc catgcactgg tggttctttg atgccttggc tgtttcattt
      301 cctgtttata ctatgataca cgttgcacta ggagataaag cacttctgaa ggatattaag
      361 acatgaaagt cccttggcta tttgctggca ctgttttgat gttttcttgc tctctagaaa
      421 ttagcatatc cttttcaaag actgcctctg atgagagtaa tcctttgcca tgatgtattt
      481 gctaaaagtc ataaatgata gtatattgtg taaagaaatg acacataaaa gggacgatgc
      541 tagattattg ataatgaggc aacttgtgca actctgcttt tggcttttat aaaacacatt
      601 tttgacacca taaatacatt gagcttatat taatgaggat ttaatacttc tgagatttta
      661 gaaacttgct tagaacaact tttcaaaaga aggggaagtt taatgttttc actaattttg
      721 ataagatatt ctgttaagca cgttttgctg ccttcataat gaggaatgat ggaaaggttt
      781 ttagcatggc tttgccagaa ttaaactgtg ctggaatatt tattttatta atttgtat
//
LOCUS       KCLJ01001120             495 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 125434cal ultra-conserved element locus
            uce-2086, sequence.
ACCESSION   KCLJ01001120
VERSION     KCLJ01001120.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 495)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 495)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..495
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="125434cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>495
                     /note="ultra-conserved element locus uce-2086"
BASE COUNT          172 a           75 c           84 g          164 t
ORIGIN      
        1 gatgaaagaa ggaaccagat ttctcagtaa caggtataga gttttagaga agacttcaag
       61 gcaaaaagaa aaaagcatag aatatactgt tatggtgtta tttttgtctt tcatttttat
      121 gacaacttat ttgtacttaa aggaatcttt ccaaagagtt aagaagcatc attaaataaa
      181 gactgtgaaa tgtgcaatat ggcttattta tttaaatgtt aattggtcca acgaacactt
      241 ctaattagct ctatatttgc ttagcaaaaa gttttacaaa ttccaattgt gaaaagcagc
      301 tattttgagc tggtaagcat gttgcagaat cagctatgat ttttctatag ttctcagccc
      361 ttgaaggcac aatttaattt ttcatgtatg catactagca acggtaaaca cttgcgagtg
      421 taaagaacct tctttaatta gctgcacaac aattaaagga ttcacaaact aaattgaacc
      481 ctgtctctgt gctta
//
LOCUS       KCLJ01001121             537 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 125540cal ultra-conserved element locus
            uce-4386, sequence.
ACCESSION   KCLJ01001121
VERSION     KCLJ01001121.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 537)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 537)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..537
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="125540cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>537
                     /note="ultra-conserved element locus uce-4386"
BASE COUNT          160 a           84 c          103 g          190 t
ORIGIN      
        1 ctctcatact tttgttgagg tcataagttt caaacagatc tttccatatt ttgctccaga
       61 cattttttct gctttccctt gacagaagaa tggaccacat ttgtggtatt cctaaattaa
      121 ttatgctttt ccaggcttaa aatattgtga cagatcaaca aaacagtagc agaaaactaa
      181 ttccttcaaa aaatatgaaa aaaggaagtt gtgtaagatg gtgtaattaa tcttgcaata
      241 aaaataattg tttacagtta aaattaatgt aacatgcatt cctcagcaga taataaatta
      301 tgggttttct cattagcatt tgaattgatt tcctctaatt tctgaggaac acatgagcat
      361 gtgactagat taagtttaat tggactacag ctggcactga ttgtgtgtgg atagggtggg
      421 ggttttgact gatttggcat cttcctgcat tgtatttcat tgtccttcct gttcaacctt
      481 ttctgcacag gttataaaaa ggggagctgt ctgaagtgtt tttagaagtg gcgtcag
//
LOCUS       KCLJ01001122             550 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 125649cal ultra-conserved element locus
            uce-507, sequence.
ACCESSION   KCLJ01001122
VERSION     KCLJ01001122.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 550)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 550)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..550
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="125649cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>550
                     /note="ultra-conserved element locus uce-507"
BASE COUNT          176 a          113 c           87 g          174 t
ORIGIN      
        1 gggggaaaaa ccttatctgc atttctcttc caattccatt tggacaacag tatttgctaa
       61 acgtagccta ttcactgctg gatatgtaat taccttcagt tcatagtcta gacattaatt
      121 ctttcgtagt atttaagact ccttgtaaca tgcttgctgc tttaagtaag caaggctaaa
      181 tcttgaccag ataaattagc gaagaatgca ataaaagctg caataaaaga actttatcct
      241 ccaaaccttc aagttgctgc taaatgagat ttctttgaaa tgcagatcag ttgaactaga
      301 ttagtgaatt ttagctcctg tcaacatcat aacaaaatac aaatacaatt gttcactggc
      361 cttatctcca tgcttccatc tgctgccttg ttatttactt tccttgattt actatgcaga
      421 tctaaataag acacatcaag gagggcttac aacacaatgg cttcttaagc tttacatcaa
      481 ggtatttgaa actgaagccc tgaaagggct gccatcaaag acatatctct aatgaacttc
      541 catatcagag
//
LOCUS       KCLJ01001123             592 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 125758cal ultra-conserved element locus
            uce-128, sequence.
ACCESSION   KCLJ01001123
VERSION     KCLJ01001123.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 592)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 592)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..592
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="125758cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>592
                     /note="ultra-conserved element locus uce-128"
BASE COUNT          208 a          117 c          108 g          159 t
ORIGIN      
        1 gagaaaacat cagttgcttc tttgacaatt ttgccattca ctgatttact tctaatgaag
       61 acgcactcca accagccagc tcgaaaggtc aaagcaaatg cctcacaaaa tcaaggcaaa
      121 tgggaaaccc gcaaagaaac cttctcataa agtggcgtgg caattaaaaa gccgtcttcg
      181 gtaaaaagta aaagaaatta agctgccact actgtaacag gttagatgaa aatcaaaatt
      241 taatgtattc tcccttgtgt catcttgttt tgtcaagaca tcaaatagaa ttggaaagta
      301 caaaataaca agcccttgag aaatcacaga agccgacctt tttgatgttg ttggtttacc
      361 ttgttctcag ttatttgaac aatgatgttt cagatttaag ggcaagataa agcttaaaaa
      421 ttaaaaagtt tggggaggac tgtccctccc aaataacaga gcatctatca atgaaggcaa
      481 atccgtccga aactagtgca cagaacaatt agcaattcca cttatttgtt caatattcag
      541 tctgggttct ataacattcc tgctagcaca ggaaaccgca ctggaaaggt ta
//
LOCUS       KCLJ01001124             604 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 125864cal ultra-conserved element locus
            uce-7872, sequence.
ACCESSION   KCLJ01001124
VERSION     KCLJ01001124.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 604)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 604)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..604
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="125864cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>604
                     /note="ultra-conserved element locus uce-7872"
BASE COUNT          203 a          103 c          118 g          180 t
ORIGIN      
        1 gagaatttgt ggcatgaagg tctgagtaag aggaactgta cttcccattg catcactgat
       61 gtatcagtcc agagccccac atctcataag ctgctttgag cccgtgcagt tagcagagta
      121 aaaggaatta aaaataaata ttaaagcacg taagaattaa atatcaccta ttcaaatagc
      181 aattatgccg ttgaaaacaa gatcaccaca cctgtacaag aaaagacaac caagcctaaa
      241 acatctgttt ggatccacct gccaagcacc tgttcctctg tttcaatgcc atttgattgc
      301 tggagatgta gaggctcttg tgaggtaatg agtgatttta cattatgcat gattgaaaac
      361 aggtgttcta atgctgtaca attctatgca tgaataattc agtttgttta gagcaagatc
      421 tttaaaagaa atatggtctt taataaatat taaggttatt ctctgcaatg tatggtggat
      481 ggtcttttca gcaggctcac tgatgaccat ttttgtataa ttttatgggt aggaaataac
      541 accgtgaaag gtaattatac ctaaagcaca taagcaatga aaattgaaag ctttctttag
      601 caag
//
LOCUS       KCLJ01001125             447 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 125972cal ultra-conserved element locus
            uce-3891, sequence.
ACCESSION   KCLJ01001125
VERSION     KCLJ01001125.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 447)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 447)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..447
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="125972cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>447
                     /note="ultra-conserved element locus uce-3891"
BASE COUNT          144 a          106 c           71 g          126 t
ORIGIN      
        1 ttcagaaagg gcttttgaaa gcacgaccca tcagttctaa tttttaaaac ttatcctttc
       61 agtcaagact agaaaaaggc ccattccaac ttttatctcc actacaaagt gctgttatct
      121 tgggctgttg tcaggagctc tctctctctt tctgctgaca agcagagact agagagataa
      181 gattgggaac gaatctcact tctctgagta aataaataat caatactcat ctaaatgtaa
      241 atgagaaagt atccccctct gataacaggg ctcttatcaa acagccaatt ttctgcagac
      301 atttggcctc aaccaaatca ccatcattca gccccagcct aatggctaaa aatcgtaact
      361 aaattgaacc gatcaccaga gatcaactaa gttcagccat ggctactaca ggttcaaatg
      421 tttggaatgc aatttttccc ccattaa
//
LOCUS       KCLJ01001126             766 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 126082cal ultra-conserved element locus
            uce-3331, sequence.
ACCESSION   KCLJ01001126
VERSION     KCLJ01001126.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 766)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 766)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..766
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="126082cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>766
                     /note="ultra-conserved element locus uce-3331"
BASE COUNT          241 a          114 c          145 g          266 t
ORIGIN      
        1 ttcaatgaag agtaaaaaga gcagtctccc tgcatataat gcatttaaat accaattgtc
       61 tgccacttct cagcaaccta acattgttaa attgcctttt aatcactctg tttgatattt
      121 gatatgtagc agtaaaatgt ttatactgcg aattgtacag taaaccttca gtttaggagc
      181 aaattaatag tctggaaccg tgagaatctg actgtatctg aatattgatg atctcacttt
      241 ctgagtctct ctgggattgg gggtgtgagg tgttgatcat tgcttctcac tgataagcaa
      301 aatatttcca gagcgtgaag aattctgtgg tgtgtgagaa ggataaacca taatctgcat
      361 caacacacta acttctcctc tgccatttgc attgaaaatc aggtagaagt tatgctaagc
      421 tctctattat agcctcatgt atgtgaaagg tcttcccctt catttgaata aggcctctta
      481 tgcacacatt taaaaggaag gttcctttaa ttagggtggc atttagaatt cttaaatgtt
      541 cactttttgt gatgctaaat tgtggagtat tttcaaatat gttgtagtag tcattttcat
      601 tagccacttt tatttttatt tatttttaaa aggaaatgac atgctctaca atatggagtg
      661 aaggagtaga ttaatatgac tagctagatt aaggaaaatt taaatcagag tgtttgatga
      721 aatgtaggaa aatgtttaaa tataggatta gacttacaat atagaa
//
LOCUS       KCLJ01001127             568 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 126194cal ultra-conserved element locus
            uce-4902, sequence.
ACCESSION   KCLJ01001127
VERSION     KCLJ01001127.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 568)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 568)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..568
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="126194cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>568
                     /note="ultra-conserved element locus uce-4902"
BASE COUNT          187 a           81 c          102 g          198 t
ORIGIN      
        1 aagttgccat cttagtgtaa ctgctagtaa atatagcagc tattttataa gtattgctgt
       61 cattttcttt gactaaagtt acagaaattc tttgaatttt atatagggga ctaaatttgt
      121 aatggaaaat gatgtttgat ggtgtttaaa tgcagagtat gtcactgtat aaagcatagg
      181 gctcttttaa gttttttttt ttaacttctt gacatgtgtc acaatttgga attctgctct
      241 catgggataa atgccagatt acatggtgta gtatttttat cctctgtact ttcactgtag
      301 aagcatacaa catcaaagaa gaggcagatc actcacatca gcagaaaatg gaataggact
      361 ataatatgct tgctttgatc tctccttcta ataattatct tggctacatg catacattga
      421 aagtaagatt tgaattaata aggccaagag accctggaaa atgtaagaag gatatctgaa
      481 tactaacttt gactatcttt aacaagataa actgcaattg agcctacaaa gttgtggatt
      541 gttaatttaa ggcaataatc cttaaatg
//
LOCUS       KCLJ01001128             753 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 126303cal ultra-conserved element locus
            uce-378, sequence.
ACCESSION   KCLJ01001128
VERSION     KCLJ01001128.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 753)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 753)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..753
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="126303cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>753
                     /note="ultra-conserved element locus uce-378"
BASE COUNT          236 a          129 c          124 g          264 t
ORIGIN      
        1 ttctgctgct taaaggcaat ttcaacatag ttttttgtag ctttaatgca atgtaggttt
       61 tttcctaaaa tgctggtgaa tacacaaatg cataaatttt ttttttggtt ccctaagact
      121 ccttattttt tcatagcttc agcagttaat tatgtcatca agataagaga aatcaaatga
      181 agccagaagg aaggcaaagg acaacaagaa taagaaagat ggaatctgtc acaagcttga
      241 attatgaata taattatgca tgattatttt atactgcaaa gatgttccct ttttctgcac
      301 atttataact aatctaaata agtagcttgc cggcagacaa cgtatttcat gatttatata
      361 aaatggtcga gataaggttc acgactgaag gaaatatgat tggaggattt ttatcagcct
      421 ctgcatgaat tactgtttga aaatgcttat gcaggagcat ttcattaatc atttaatcat
      481 aatcctagca ggatgtttga actgatttca caaataccct ttcatttcac tacttcatta
      541 tgctcgctaa tggatccaat atattatata tatcataaat tatatcacat cttcactgac
      601 catgtaggtc actgtcacta agcattcctc cgtgcttagc ttggtagttt agcaaatgtt
      661 gctccagctc acttttggaa ttccactttt tgccatttac tgcaatttga agttttctta
      721 tcggtcagcg ggggtcttaa ttaaaagaca act
//
LOCUS       KCLJ01001129             552 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 126390cal ultra-conserved element locus
            uce-3901, sequence.
ACCESSION   KCLJ01001129
VERSION     KCLJ01001129.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 552)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 552)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..552
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="126390cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>552
                     /note="ultra-conserved element locus uce-3901"
BASE COUNT          184 a           81 c           85 g          202 t
ORIGIN      
        1 aagattacaa gttatttctg gacctaaatg tcacttataa gtacttttaa aaattctagt
       61 tgtgtgacat tgtgatgaga caaaaagctc ctgagctgca ttttaataag catagaatct
      121 tttaaattta tcataaattt atatgtacag atttaaaatt tatacctggg gactttaata
      181 tcacacaatt catgttcaga tgtcattgaa catgtaattg tttctacatt tcacattatg
      241 ctgtactttc agattgtact ataaatcttt tgtgaccatg acggttattt cggaatgttg
      301 ctaacgctga tttatgctca ttcatgttac tttaatttga acatactatt tctaaagcag
      361 acacttaatg cagctggtac ttagaaagac atgaatatcc cataagttaa aaatttttac
      421 atttcaatta caacagcttt acaggaagtg gaacgttttc cagtagatta aattgtaatc
      481 acaaagatat gttaaatcat ttgttagtaa gttatgcatt aacgtgtctg tctttgaaag
      541 gtgaggaacc ca
//
LOCUS       KCLJ01001130             686 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 126495cal ultra-conserved element locus
            uce-7462, sequence.
ACCESSION   KCLJ01001130
VERSION     KCLJ01001130.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 686)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 686)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..686
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="126495cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>686
                     /note="ultra-conserved element locus uce-7462"
BASE COUNT          232 a          118 c          135 g          201 t
ORIGIN      
        1 aatgggtatg atttaggcaa gtaataaaag agaaggttaa ctttatctgg tctcagagtt
       61 gccgtgtatt catgtgaaat tacagtgtgt taaataattg cacaaagtat aggccagttt
      121 taatgtctat actttatgcc aaaaatacat tccttttcac agaataagca aagcccagga
      181 atagtgaagc agcttagcat ctattctaac aaacattagg attcaggctg catacggatg
      241 ggacaggacc aacaggattt ccaactcaat gtaatagctg tgcgtatttg attacttagg
      301 acggacaaaa tgaaatacca taaggaccac aataaacatt gatagactga acaaaaacac
      361 ggtagtgacg tgcttcaaga cagatagcag agagtgattt tttgtgacaa tctccctaag
      421 gcttttgtgc tgttaccttt atatcctatc ttgtctgctt ttatggccaa ggagggaaaa
      481 tttgggaaac aattaacata atttaatata tccaaaatcg ataatcgttt tcagtctaac
      541 attgcattca gtatctgtca cttcctagtg atgaaatctg gcatgcagcc aacatgatct
      601 gtatgagaat gacaacgcta taaatatgta gatttcggtg ctccttatct atgactgtga
      661 taagacactg acagaagcaa gtacag
//
LOCUS       KCLJ01001131             558 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 126607cal ultra-conserved element locus
            uce-3603, sequence.
ACCESSION   KCLJ01001131
VERSION     KCLJ01001131.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 558)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 558)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..558
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="126607cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>558
                     /note="ultra-conserved element locus uce-3603"
BASE COUNT          176 a           99 c          101 g          182 t
ORIGIN      
        1 ttgtgtttct gaacaagcaa taaggctcca gccttagatg agaatagctg ggattttgga
       61 actcattgtt ttctcttgga agatggatta aattgatcat tttttcctag acggagtgca
      121 cttcaggctc attttgcttt gtaattaaga agaaagccag aaacatcatt tacacattaa
      181 gaatttaata gatatatttt tctagcttta tgcattagca caggacagcc cattaatgaa
      241 ataagtcttc cttcagggtc aatttagatg ggctgtaatc ttctgcaaat atattgcaaa
      301 tgaggatcat ttaatgatct taaaactaac tgccagaaaa ggattgttat aactctccag
      361 acaacaaaaa gagattttgg catgacttgc agtacctttg taattagcaa atgtttaatt
      421 tcaacccacc agatcataaa atttaaaata ttatcttctg cggaggtcag tttcagactc
      481 tgtgacctga ggtgttaatt ctgagaaacc tgaggttgtg tttgtcactc aataaacaac
      541 agctccagct ccctgctc
//
LOCUS       KCLJ01001132             653 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 126715cal ultra-conserved element locus
            uce-1285, sequence.
ACCESSION   KCLJ01001132
VERSION     KCLJ01001132.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 653)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 653)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..653
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="126715cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>653
                     /note="ultra-conserved element locus uce-1285"
BASE COUNT          170 a          170 c          128 g          185 t
ORIGIN      
        1 aaagctatgg agagaatggt gcagttctct ataagctgct ctgagaccct ttatttattt
       61 attttttgct ttgggcacca gctagttctg ggccacaagg ggttaaccac aaaagctgct
      121 ttctctgcct tcactctacc tcaatttcca ctgctcccat caccttcctc ccccaccccc
      181 tgatcttatg aaaaaaaccc atcaaaataa ctattttatg tctccaaata tgcagatcat
      241 tttctttaat gaaagatgct tgacgtctcc gatccaatta atatgcaaat gcaggcgagg
      301 atttatttgt gacattctgt ctgggtgaga gaaaacaaaa aaggcctgtt aaccaaaaca
      361 ctaattgctg tgactgattg tcacatatca tcattttcat aggatctcct ccatccctgg
      421 cttgcaggga gctgtgaacc aggactcgga gactagtaga caccaaggag aaacagggca
      481 accagctacc tgcctggcac gctcggatga gccgaggcct ccttcctgct gcccctccag
      541 cttgcatccc tccccagccc aaccagcaga ggtattggaa gcagtttttt tgtgctttct
      601 gggcaagata ttctgttatc cttcaaaagt caggagttac cagtgtcagt ctt
//
LOCUS       KCLJ01001133             152 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 126826cal ultra-conserved element locus
            uce-6218, sequence.
ACCESSION   KCLJ01001133
VERSION     KCLJ01001133.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 152)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 152)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..152
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="126826cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>152
                     /note="ultra-conserved element locus uce-6218"
BASE COUNT           35 a           37 c           39 g           41 t
ORIGIN      
        1 cacagctgat tttagcagca actgtcctca ctgctcacct gaagcgttta aggtgcagcc
       61 ggaggacctg aggtagtctg tagatcagca actgcttttt agcttcactc agaacaagag
      121 gtttgggaga agattttcgc cgtttgcctg cc
//
LOCUS       KCLJ01001134             721 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 126923cal ultra-conserved element locus
            uce-2109, sequence.
ACCESSION   KCLJ01001134
VERSION     KCLJ01001134.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 721)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 721)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..721
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="126923cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>721
                     /note="ultra-conserved element locus uce-2109"
BASE COUNT          217 a          133 c          119 g          252 t
ORIGIN      
        1 tttatctctc ttgctgtgga gatcaatcta tgccattttt ctccttttat agctttattt
       61 ttccttcttt gtccagcatt atcaaactat gacacaaatt caattatgat gttgtgatgc
      121 caaacctgtg gtcctggcaa agtgtatcat gcagcatatc taggtaagtg aattaaaaaa
      181 gcatctgagc aggtatctgg tgtgtgtcac tgctcattct tccataataa actatgttct
      241 tcttctcatt catttgtcaa tcacagtaac taaagattat tatatgctgt atgtacgtga
      301 caccagcaat ttgcaaagtc tgttggcaag aaaatcaggt tagaatgaca gagtgagaaa
      361 ttaagcagaa gtctgatgta attagctata acaatcagtg ctctaatttc tgatttattg
      421 tttcctgttt tcctgctgct ttcagtccat gcatactgta tgtgcttcat ataggtcaaa
      481 caattgtctt atcagtcctg gcaaaccaag aggtcagagt taacaatatt tatttaaaca
      541 tgcaggatgc ttcccactgc aattaggaaa taactattac taatagatct ttggtgctat
      601 ttcctcattt ataagataaa aacaataggg acaggcttct tcataaatat ttcttgcaga
      661 tagatttact tgatgtttgt taaactgacc acactgtcca ccaaatgaca atctgataac
      721 a
//
LOCUS       KCLJ01001135             359 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 127034cal ultra-conserved element locus
            uce-1568, sequence.
ACCESSION   KCLJ01001135
VERSION     KCLJ01001135.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 359)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 359)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..359
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="127034cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>359
                     /note="ultra-conserved element locus uce-1568"
BASE COUNT          101 a           55 c           71 g          132 t
ORIGIN      
        1 aaggacccca gtgagattgg acactgagag gtgcaccaga cttcctcctt ttgcttggca
       61 cttctctttt tattctttga ttaaagtctt tttcctttac ttacatcctc cattaagatg
      121 tctcagtgtc atttagggtg ttaattgaga ggaggtttaa gctcatcaag gcgattataa
      181 gtgatagtta aaaatttcta tatatggcct atgctggaat cagcacagta ggatgccatt
      241 tttcttttat ctaagtgaca ttggtaataa tagatgaaat tattactaaa tcgcagctgc
      301 agagatgata tcatgatttt tttgtgtaat ctttgatgaa aaattaattt ttgagaggg
//
LOCUS       KCLJ01001136             362 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 127135cal ultra-conserved element locus
            uce-4753, sequence.
ACCESSION   KCLJ01001136
VERSION     KCLJ01001136.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 362)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 362)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..362
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="127135cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>362
                     /note="ultra-conserved element locus uce-4753"
BASE COUNT          108 a           52 c           70 g          132 t
ORIGIN      
        1 tatcttaaac tgtttgagat tgccctgttt cagcctttct tcttataatc tactagaaaa
       61 tattctagtg ggagtcttta atgtaccctt ttgcccgttg ctctctgatt ttgattatgc
      121 attgcattgc gggtgaaatt tgggttaaag ataattgtaa atatggtatt gatattaaat
      181 gatgttttcc caacattgca ataatgcttg ttttgtttgc tggagagttt attacttttt
      241 gatcaatagc atgtgagatt tgtgagggaa attagcatag tgaataacaa ttaggagaaa
      301 aatcaatggc attcagacaa ataagtggct tgaaaaagtc ccataggcac acatatactc
      361 ac
//
LOCUS       KCLJ01001137             421 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 127234cal ultra-conserved element locus
            uce-7490, sequence.
ACCESSION   KCLJ01001137
VERSION     KCLJ01001137.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 421)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 421)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..421
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="127234cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>421
                     /note="ultra-conserved element locus uce-7490"
BASE COUNT          141 a           73 c           71 g          136 t
ORIGIN      
        1 gcagtggagg gagaaatgtt attggttttc tcagaaggat tttcttttat acatagcttt
       61 atcctataat tttgtccctg ttgggcacac tgcctaaatt taaacacaaa cagtcaagca
      121 atgaagaaac attaccacat ttactgtgaa caaaaactcc cagttgtaca gtgaaatttt
      181 aatacatttc aacttatctc ttttactaat ggggagagta caaaccctgc aggaattcgc
      241 tctgcaaact ggtaattaca gtagactcac ttttttataa tgcatatgta tagtcagaca
      301 caagaaacat agctgccctt ttgatgtagg ttacaatagg aatgtttatg aaaatctgca
      361 attctaaagg aatgcactat ttcatgggaa gttgtccttt agctatacta aataatacaa
      421 t
//
LOCUS       KCLJ01001138             362 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 127341cal ultra-conserved element locus
            uce-4455, sequence.
ACCESSION   KCLJ01001138
VERSION     KCLJ01001138.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 362)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 362)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..362
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="127341cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>362
                     /note="ultra-conserved element locus uce-4455"
BASE COUNT          103 a           70 c           75 g          114 t
ORIGIN      
        1 tgttctgtaa gcgaagccag cacagctata acagatgaga gtacaccaga aggggttcct
       61 gctccaaaag cccagtcata tgcatctgac tcctttaaca tctcctggac taagcctgag
      121 tatccgaatg gtaagtgaac tcttttagcc tcaagttaaa aagatgatta gtaaaggtaa
      181 attaatattc taaatggcag cttatatgtg gtgcttaatt tttaatgatc attttagcac
      241 ataaaatacc tgagatagta tcattgtctg cagctgggag attgtggttt tcagcccaac
      301 gtgctgtttc agtggctcaa aagtgctccc ttttgatagt tcttgtgtac tgcatctcat
      361 tg
//
LOCUS       KCLJ01001139             833 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 127439cal ultra-conserved element locus
            uce-7801, sequence.
ACCESSION   KCLJ01001139
VERSION     KCLJ01001139.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 833)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 833)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..833
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="127439cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>833
                     /note="ultra-conserved element locus uce-7801"
BASE COUNT          265 a          132 c          170 g          266 t
ORIGIN      
        1 gatgtttcac tgcttctgtc tgacataaac taatgatgta gactggctaa acctggtgac
       61 atgattaaac agtgatgtta attagtggct tccgtgagag atttgattcc ttcagcagta
      121 tttgtgcaca cagccaagtt aaagagactt ttctttacag catctgttaa taccactaag
      181 agttcagaaa aagcatttaa attatttggt gaagctcata aggtccatct tcatgccctg
      241 tggttgtgca aagacaatat ctttgtgtga agggaaatgg caattttctg caggcagtaa
      301 tcatctgtac tattacttag atgtcatgta ttgatgatcc tatttcaatc aaacatatct
      361 cattcagaga gcttttgatg ggaggaattt ttggaagggt ttaggaaggt taaatctgcg
      421 agacatggct tccatctgga atgcattagc tacaaagatt tattagccag agtgccgctg
      481 cataatgttc catggaaagc aaagccctgc atctaatttc cagcatgatg tctatatgag
      541 aagtgatctt tgaaatatca taggtgacaa tcaagtttgt tataaaaata gtaaatgcac
      601 aggattttca tggcagctat tttaaatccc tcatgagggc tgctaaacag gtagttgatt
      661 tgttgacaaa ttataaaact gtagaaatag caacatgcat gacattttta aacaggatag
      721 actctttaag cagtaagagt cacatcagga aaattatcaa catttagtgg ttgcttaact
      781 ctgtgaagga tgacattagg aaataataga ggcaatattt aactttctgt ttc
//
LOCUS       KCLJ01001140             699 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 127552cal ultra-conserved element locus
            uce-7521, sequence.
ACCESSION   KCLJ01001140
VERSION     KCLJ01001140.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 699)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 699)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..699
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="127552cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>699
                     /note="ultra-conserved element locus uce-7521"
BASE COUNT          216 a          115 c          123 g          245 t
ORIGIN      
        1 aaatccgtgc ttctggtgtc aactacagta acaaaatgaa catgcaaagg aatcaggtcc
       61 ttgctcatta cattctaaag gatattatta tttggctgta aaccggttta gttaaggctg
      121 aaatcaaatt tatacagctt tcagaaagtt actggaacta aagtagttgg tgatgtaatg
      181 tgtgaagtca aagactgttt tgctatgctg gagaaaacta atggaaacat tcacttgggg
      241 taagacaaat ggtattaaat gagaaaacac accatgaatt gcaaatggag ctgagttaat
      301 ttgttgctac agtagtgttg ccctactgtt aaatgaaggc tgtgtaatta tcttgctggc
      361 agagataatg tcaaaacctc atttctcctt acatgcctca tttttacatg agggctaatt
      421 gagctgcaag gtgacaactg attatatata gctatcatca ggtcctcttg ctcaatttgc
      481 aaataatgtt atctttttta agtgatgatt tttatcacat gtcaaattaa ggcattaaaa
      541 aaacttttta aagctatttt agttttgtag cactgcattt ctgtcaccat tttatttata
      601 ttaattcttc tttcaagatt cttgacatcc atttactcag tatcccttta tttaaagcag
      661 ggagtactag tcactttttc atgcctcctt atcatcatg
//
LOCUS       KCLJ01001141             747 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 127662cal ultra-conserved element locus
            uce-710, sequence.
ACCESSION   KCLJ01001141
VERSION     KCLJ01001141.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 747)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 747)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..747
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="127662cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>747
                     /note="ultra-conserved element locus uce-710"
BASE COUNT          249 a          158 c          134 g          206 t
ORIGIN      
        1 gaatgtttca aaaggggaac ccaaaaaaac agagaagtga tcattgagca aatcactctg
       61 cataagttac catctatttt ccatgaaaca cagggtaaag catgttaatg taaagtacag
      121 atattgcaag gcagggtagt attacagtgt gcaggagagc cccgcggtct gcggcagcct
      181 gaagccgtgc acaagtgctt acagctgcag tgacatggtg ctaagcatgt tttaagacta
      241 gtcccagtcg agcggcatct tatccaacca gaaacaatcc cacaatccag ctctttttaa
      301 gtgatcatcc ttgtatcata acagatttag gttgcagcta ctttggatta tggttaatct
      361 aacctttatc cattcacatc ttcacctgaa acttacaagg accaagagtc aattgccagg
      421 gcataattca caatgacact gatctctcct tcctcactct aattatctgg attaagaata
      481 acacttttga gtaattattt tcacattgga taaacattaa gctttcctgg atttatctga
      541 gctttttctt aacatgaaat agatccgacc aggcttataa gaacataact gacagcggtg
      601 acagcttaat caaggaaacc ctaaacaact aaaacaatag gaaatgtttg tttcacattg
      661 ttttgaataa tcaagagcca gtaacttgat aacccattgg caaactatct actcatagac
      721 caaagcaata tccaggcaga tcaatta
//
LOCUS       KCLJ01001142             617 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 127770cal ultra-conserved element locus
            uce-5710, sequence.
ACCESSION   KCLJ01001142
VERSION     KCLJ01001142.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 617)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 617)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..617
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="127770cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>617
                     /note="ultra-conserved element locus uce-5710"
BASE COUNT          211 a          117 c          117 g          172 t
ORIGIN      
        1 tgacacaggc tgcacctgaa tccaatcact ccctgggctc tgagaagatt cacacgcgag
       61 gactaaattt gtcacaaatg ggttggtttc cgatcctccc gtagccaact tgctttattc
      121 tgacccccgt ttaacaaatc aacttaatgg gcactgggag tgccataaaa cttaacaatg
      181 gagtgatttt aacttttaaa atatagttat gaagcaaaat gttggagagc tccttcaata
      241 ctggaaatca aattaaaact agacattttt taacagtctt gacagatata atcctagtta
      301 ccatgtaaat ttatggtaag ctgctgtgat attagccaca ggtgctactt ttaatatatg
      361 gcctgcatct ggctgggaat aaaatatctc aagaggactg aaaatgacct cactatcaga
      421 caatggagaa gccacaagac cgctgtggca tataaaaagc tggagatgtg gtccacaact
      481 gaatatttac cataaaattc attttaactc tgcagattgt aagttaaagg atataatgtt
      541 ttcaatacat acaaggcgtg gacgtatttt agacaaacag ccaaaagaat aaagtggaaa
      601 aagtacactg cctatat
//
LOCUS       KCLJ01001143             419 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 127882cal ultra-conserved element locus
            uce-7033, sequence.
ACCESSION   KCLJ01001143
VERSION     KCLJ01001143.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 419)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 419)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..419
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="127882cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>419
                     /note="ultra-conserved element locus uce-7033"
BASE COUNT          123 a           84 c           81 g          131 t
ORIGIN      
        1 tgagggctca cttatctgag ttacagcata ttccatgaac ctgattgtgc cctaatgata
       61 gcactgtcct ttagcaaagc cctggggcca cgcaaagtgt tcagtgccgt ggacagcagc
      121 tcatgttttg ctcactgcct aaggcctaaa taggcctttc atatacaggc cagatgttca
      181 ctctttctta ggccagctta aggctagaac aaaccttttc aaccagggtt tatcagagtt
      241 tctaaattac atgctgggaa gaaatttaat tggtttaatt aagaaagttt atttcatggt
      301 aattcagttt tgttatgctg caagacttaa tgtgtcctct gataggagtg atttgttata
      361 aatattcata gcaatcctct tctcatccaa gccaaaaaaa tcaaatagaa agttgcaaa
//
LOCUS       KCLJ01001144             621 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 127989cal ultra-conserved element locus
            uce-7269, sequence.
ACCESSION   KCLJ01001144
VERSION     KCLJ01001144.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 621)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 621)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..621
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="127989cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>621
                     /note="ultra-conserved element locus uce-7269"
BASE COUNT          211 a          115 c          112 g          183 t
ORIGIN      
        1 ttttcagcat tttcctttta ctcttccttc caaaatgata atgaaataag ataaaataaa
       61 taaaattatt aacttaaaag caaagcagga gagaaaccaa ttctgtttcc actgctgcta
      121 attttaatgc cacccattgt tcagctctgc agtctaattt tatgttaata tcctgaaagt
      181 tgtcaaatct tggcaaaacc tatgcataaa ttacacagaa agtagctcac aggaggggga
      241 aagtaatgac tgtcatggtt agccaaaccc attaatagtc tgacaagcaa taacccaaga
      301 gctctggtca actgctgcag acatctgtga aacttttgca attaattttt ttggaggagg
      361 tatcagctgt gaaatagcac ataagtgact gattattatc agctctgctg gtgagggcag
      421 aactgatcaa ctccaagcat tcatccttct accacattat tggtttatga ataaaaattt
      481 taaaggcact ctaatctcca gaaagggaaa aggaggagta gttgcagatg agcagcactt
      541 acacatgatc tttcatgtca gcagtttcca aagaacttta cagaggtcat tagcattatc
      601 tctgtctgta aagtgaagaa a
//
LOCUS       KCLJ01001145             477 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 128102cal ultra-conserved element locus
            uce-4542, sequence.
ACCESSION   KCLJ01001145
VERSION     KCLJ01001145.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 477)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 477)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..477
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="128102cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>477
                     /note="ultra-conserved element locus uce-4542"
BASE COUNT          168 a           80 c           85 g          144 t
ORIGIN      
        1 gggctgaaat ctgcttctca actttgtaac atttaaatat caaaaacttt gttttctaat
       61 gagcgaagta ttgagggggg agaaatgaat tatatgcttg atgtatactg aaggctggga
      121 aaattaaggc catttcccat ggtgagaatg cagtgatttc agtttgtgag aataaattaa
      181 acctttggga gaatttgtct tccattaaat tgaacagcta aacaggcaca gaagatttta
      241 atgtcaccac cagcaaaccc caaaggttac aaaaagaaac agtgttttct gtttggaagt
      301 tctctctacc taagaaaaga ttcaaactgt aaatgtatgt tgagacacaa agactcttaa
      361 agatcataat tccattccta taccatatgc tattaatgtc tgtcaacact gtttagccag
      421 caactgctga cagaaccata tttgctatct aaatacatca taaataaatc agtaatg
//
LOCUS       KCLJ01001146             590 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 128313cal ultra-conserved element locus
            uce-2223, sequence.
ACCESSION   KCLJ01001146
VERSION     KCLJ01001146.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 590)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 590)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..590
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="128313cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>590
                     /note="ultra-conserved element locus uce-2223"
BASE COUNT          184 a          128 c          126 g          152 t
ORIGIN      
        1 gagagagaaa gaaagagcaa gagagacaga cggagagagg gagagagagt gcaccaggaa
       61 ttatctatgc ataaagaaat taaaagagaa tatttttcca gagcaattga agcccatctc
      121 ctgaacaatg acgacagctc ctcattttcg acaacaatag agggcacgta ggagtcagct
      181 cattagaata tctgtggctc ttttctgttc tctctgcatt aagcccccat aatgtcagtt
      241 gtcacttatt aatgacaatt aactagtaat cagcagtgag actcttcgag gtggtccttg
      301 cctgacaggt gaagaaagag aacattgcgt agtgccatgc agtgacatgg aaccttcaaa
      361 gggagcacgg catttccata aattatttca gaaagaaatt ttcttttaga cattctcttt
      421 aaagcattag gatctttaac cctagaagga ctatacggtt gcagctgtcc tccctccccc
      481 ctccccttat cgctagtatt ggataaaatt ggaaggcagc ctgatctgtc atgtaaccca
      541 attcccatct ggggctggaa cagctatcaa cccactctgc tgaaactata
//
LOCUS       KCLJ01001147             699 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 128414cal ultra-conserved element locus
            uce-2477, sequence.
ACCESSION   KCLJ01001147
VERSION     KCLJ01001147.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 699)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 699)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..699
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="128414cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>699
                     /note="ultra-conserved element locus uce-2477"
BASE COUNT          200 a          158 c          120 g          221 t
ORIGIN      
        1 aacaagagca acctctgtgc ttctagcagg ttgaatgata acccttaaag gcatcccatt
       61 aaaagccaac aaaaagattc ttcacctctt tctcttctct cctctatccc cttaaaatga
      121 atgctgcaaa ttattagcca acgctggcaa ttggagaacg aagcagcttg catgtgggta
      181 tattttcaca gtgattctaa tctgagaaat ttacttgctc ttccccttct atctgataaa
      241 ctatacattc aagcattctc attagtgttc ggatcaccaa agagagctgg agatgaatca
      301 gtccatccac ccctcctctc cctgctctgt cgagattatt tcattgaaat gttcattttc
      361 atccctgctg gcaacattag aatggaagta tttaacctgt ttccattact tatacaaatt
      421 accattatgg ggtaggacag atgttagaat catgccacat aactgacttc catacattct
      481 ttacagggag gataagaaga aggaaagctg ttagatcata ttatccagtc tcaataatgt
      541 tctctctcct cccagattca ttaacttcca acatcaacgt ttccctttct ttctgtgtga
      601 aaatgctccg tctccttgag ctcatttaat ttggagcagg aaatctttgt cagaaataat
      661 tttttgatca ggtgctctaa ctaaggggcg aagggggtg
//
LOCUS       KCLJ01001148             712 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 128523cal ultra-conserved element locus
            uce-1360, sequence.
ACCESSION   KCLJ01001148
VERSION     KCLJ01001148.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 712)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 712)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..712
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="128523cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>712
                     /note="ultra-conserved element locus uce-1360"
BASE COUNT          221 a          141 c          127 g          223 t
ORIGIN      
        1 aatgggtgct cactactgta ccagagatca gggattctta ttcttactaa tgaagaaaat
       61 gataacagac atggttgaag tactattatt cccctttctc tcttcttgct gtcctcagtg
      121 ttatttacat tgatgtgaat tgcaagtaaa ccaatattat ccatctctct gccctaattt
      181 gttgacttta ataagtctta aataagcact tcctgaagat gaagtaagat atgcaagcaa
      241 gtagtccttt tatcaacaat tttgccacag aaacacacaa acatttcaat ggctcttcat
      301 tagcaaacaa atcaacaagt gatattttaa tgcatgactt tattccatct ctgtggggac
      361 cgtagttgag agtgtgatgt acagtacaga gaaaggaatc atcagccaca gtgtcccagg
      421 gctctatcca ttgaggactt ctcagcctct gcttaaagag tgcatttaat tgactgatag
      481 acagtagctt ctttgttcac agaagacagc gaagtaatgg cagcttgaaa atcgtaccat
      541 ctacaggatc tcctgagact agtaacaggg ggatatgtgt caggaataaa taaataatct
      601 aattattaag ccacttcctg tcaagttaac tccaatttgt tggcttttga aggcaacaaa
      661 acgaggcatt tttcctcatt atgcttctct ttttatacca ctggtaatca ca
//
LOCUS       KCLJ01001149             852 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 128631cal ultra-conserved element locus
            uce-1822, sequence.
ACCESSION   KCLJ01001149
VERSION     KCLJ01001149.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 852)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 852)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..852
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="128631cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>852
                     /note="ultra-conserved element locus uce-1822"
BASE COUNT          233 a          160 c          156 g          303 t
ORIGIN      
        1 attcggcatg tggtgtgctg tgcttttcca gcaggctgct ttttgtcatt atctctccac
       61 ccaagtgaat gttcaggatg ggcatgttct ttcttcaatt attgcagagg actaaaatgt
      121 aagcaataaa tgctaaagcc agatttttct aacacaaaac atcaagcctt tgtgttctca
      181 tataattatt ctgaaagagt tacatgcctg gaaatatact actgtgtctt aaaatatgaa
      241 gcagtgtttt ctttcaggat aaggataaga atgtgattta agttttcttt atcccatttc
      301 ttcactgtgt tgtgctgaca tgattgttca aagaaattgt gcttttggaa ggaaaaggtt
      361 aaagtttgct actgatattc atcaggagat ggatatttaa tctttaatct cttgttctag
      421 gcccctactt cggatcaact cattatcccg aataaacgat gtgtcattcc cattatttat
      481 gtttcactgc agccaaagta tctggacctc gttttggtaa gcaccattca tttcgaccca
      541 ttcagtatta atctcccttc taacatcttt cctgtcctat gtgctgtccc ctatttgctt
      601 ttatgttttc cgcagagtgt ttataaaagg ataatctttt acaaagcaga cagaattttt
      661 gtgtataaac tgctctgttt gaatgcctca ttgatatacc atctaaactg aagtgttcag
      721 caagattagt gcatccactg agccactgaa ctgggtaaaa atatgggaac tgctcctttc
      781 tttatagcga gagagggtag ctaatgatgc catcttcttt taaataggat acttttagca
      841 gatggactct ga
//
LOCUS       KCLJ01001150             785 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 128743cal ultra-conserved element locus
            uce-4607, sequence.
ACCESSION   KCLJ01001150
VERSION     KCLJ01001150.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 785)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 785)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..785
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="128743cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>785
                     /note="ultra-conserved element locus uce-4607"
BASE COUNT          274 a          152 c          173 g          186 t
ORIGIN      
        1 agcatctggt tctctcagat cacgaaggac ttacattgcc acgccaaaga attcgtgttt
       61 ggctgtggag atgacaacat cagctgtgca cagagctcgg aaatagtcat ccttgctggg
      121 caagtacccc cagtgcaaga cggacgatcc caacacctcc ctggcctctg aaaagatatc
      181 tttaacggga gaaagaggaa agtcaagtat ttaatatggt gtaaaatgat ataagatgtc
      241 agcagtgtct catctgaagt tcaggttaat tagctgctgc ttattttaac gaacttcttg
      301 gagttgtttg cttttataat caaggcacag aagcagaacc aaatgttaag gtgccaaaaa
      361 aagctgacaa aagcaaaggc ccgcctcgcc accctccccc taaatgaaaa gccaactgtc
      421 tgcttcataa aactcgctta gcagacactg aaacaaaatg gactgtaaag ttcgttagat
      481 gaaaatatta aaaaagaatt aagctaatgg agataaaatt aaaagaaatg aggcaacaaa
      541 cacatcacac caaaaatggc attgcagtga cagctaagat tcctaatgac ggactgcatt
      601 cggaaaaatt aaatggcatt ccgtgcttaa atttctttgg aaagtaatga tccatgaatg
      661 atgctcactc caggcacttc agaaggagtg aaaaaagcaa agtgttctga aataacaaag
      721 aaatatgggt tgcagagtgg aaggaggttt agacaatgcc atgggaggtc tcctaaatgg
      781 ggctg
//
LOCUS       KCLJ01001151             866 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 128856cal ultra-conserved element locus
            uce-990, sequence.
ACCESSION   KCLJ01001151
VERSION     KCLJ01001151.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 866)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 866)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..866
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="128856cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>866
                     /note="ultra-conserved element locus uce-990"
BASE COUNT          274 a          180 c          170 g          242 t
ORIGIN      
        1 tatttcagtc tttgggcaaa acaagcttga catccctgtt ggcatctctg ctgagaacag
       61 acactggccc tactcagaaa acatcaaacg tgactttctg ctggctgtgg caaagctgaa
      121 tactgaaggc aggggaggag aggtcacaga ggaagcagta gttaacgggg tgaagtgagt
      181 gttataatcc ccaaattgca gtaggactga atgtttgcag acaatctgcc tgtctatacc
      241 aagacagcct catttttctt tcttctagga gagggttaag tataatctga agcctggaaa
      301 atggctgctg ttgatactag tgaggccttc tctttaacta gatccttcag gaaaaaacaa
      361 attaatcaac agccagctga agtgggttta atgattgcat tctgcataca atcagctttt
      421 cccttttcaa gggccatcaa tatgtcaagg gaagacatat ctgaaggata tagctcttaa
      481 catcaaggtt atctattctc cacaaggctc ccactcctta ctgggctgat actttacact
      541 gcctgtgtct aacattttca tcaactctgc aatcaatcaa ggtaataatg ttgtgcaaaa
      601 aatcaattaa caacgcaatt aaactttcct tattatctca aagggctgaa ataataccta
      661 aagggaagat agactcactg aatgcagaca tccataaccc aatgtgaaag tgaattatga
      721 ggttagacag atgcaggcat gtactggcgc tgttattttc aaagggatat atctcatcca
      781 ggcagtgtat cagtcaccac caatcccata ccctaaaatt ccaaattact tttaagaaat
      841 atacgatgtg caatatccat ttcata
//
LOCUS       KCLJ01001152             514 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 128969cal ultra-conserved element locus
            uce-3225, sequence.
ACCESSION   KCLJ01001152
VERSION     KCLJ01001152.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 514)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 514)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..514
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="128969cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>514
                     /note="ultra-conserved element locus uce-3225"
BASE COUNT          183 a           69 c           89 g          173 t
ORIGIN      
        1 ccattagtta ctttagaggt aaaaaataaa aggatgtttt acctaccaaa ttttgctagc
       61 tacccatagc ttaacttaat gatttgtata agtgatagta attgctgaaa ctacagttga
      121 gtattattag ctataaaatg aacatggtta tatgtccaac acaactagca aggaacagaa
      181 atgcagttgt atccaagaga aaataattac agcaataatc agtgtaattc atgataatgg
      241 ctgaattgaa tttcacacca tagctccaag cacttacatt taatgaatgt agtttgtgct
      301 tgtttactaa aaaggttttt agcagaaaat cgataatgta acttcagtgt ttctaattgc
      361 aaatgcaaaa aaagtagtgg ttcaataagg attttgtagg gaaaattaag gtatgtgagt
      421 gcagcaaatg ctgttgcttt aattaggcta cctgcacatt agtgctatag ttccttaata
      481 tttatttatt actccatatt gattaaaatt ggtt
//
LOCUS       KCLJ01001153             580 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 129077cal ultra-conserved element locus
            uce-2645, sequence.
ACCESSION   KCLJ01001153
VERSION     KCLJ01001153.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 580)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 580)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..580
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="129077cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>580
                     /note="ultra-conserved element locus uce-2645"
BASE COUNT          145 a          123 c          150 g          162 t
ORIGIN      
        1 gaaaggtgca aattgcagct gcacaattaa atcatggggt gtgtcccggc ctcgcagctc
       61 agccctaagg aggagacagt ggcattacta atcagggctt tgacctttac atggctttta
      121 tttaatacac attccacact tccccaaact cccatccaaa acattgacat ttccgctgat
      181 agattgggtc agattttgga gtagttgggg gactcaattc actcttacaa tggttaaatt
      241 cttacagcta aatgggctta ttcagttagt gcagcagctg gtgtgatttc gagaagaaaa
      301 taaacatttc cttcaaatat tttgattggc aactggacaa ctgaagtact caagctcgga
      361 ttgccagggt ccaaaaaagc aaatgggggc tggacagcga gtaagcgagg aggcagcact
      421 acggagcaga tgtgtgtgat gtgtgctggg gaggagggga ttttcgccca atttgagctg
      481 tgattccttc acccactgct tgttccctag ctttgccagc tgcttgctcc gcgctgctgt
      541 ttgatctgtg gcagagcttg ctgctgagtt aggtggttat
//
LOCUS       KCLJ01001154             487 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 129184cal ultra-conserved element locus
            uce-7940, sequence.
ACCESSION   KCLJ01001154
VERSION     KCLJ01001154.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 487)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 487)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..487
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="129184cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>487
                     /note="ultra-conserved element locus uce-7940"
BASE COUNT          149 a           93 c           90 g          155 t
ORIGIN      
        1 tttttattag actagtcagc cttgatatta gtcttcccaa agctactatc cattacactg
       61 tcaggaaagc aagctgcctt acagtaggcc aagtgtcaac agaaggtgag gcagaaaatc
      121 agccacaatc taaagctaat taccctgcct agaagttaat taaatacttg ttaggagcag
      181 cagggtagat cctaattaaa cttgtctaat aacagtatgc tgacatactc tgacactggg
      241 aattcctaca gggtttaaat aattgtacaa agggcaataa tacctgtcac atcatggtgt
      301 gcaggcaaac cctgaagatg cacatttctc agtattttct gtattaattt gccacatatt
      361 gtgcacttca catgtgttta atttacacat gttttaattt tcgtgccctg gatcttttta
      421 aatgactttg cggttgctga tctaaaaggg agatggtcat tagtatttca ttggaccatt
      481 taataca
//
LOCUS       KCLJ01001155             863 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 129291cal ultra-conserved element locus
            uce-1819, sequence.
ACCESSION   KCLJ01001155
VERSION     KCLJ01001155.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 863)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 863)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..863
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="129291cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>863
                     /note="ultra-conserved element locus uce-1819"
BASE COUNT          279 a          134 c          172 g          278 t
ORIGIN      
        1 tcttcagctt tgataaatac ttaaaaatgt atttttaaaa agtcattaac ttctggaata
       61 taagactcag caatcacact tgcagcatgt gaagctgctc tgaaatttgt agcaaaatat
      121 ataccacatt tttaatcagg gaactgtgta tcataaagtc ctaatacctg taagtgaatt
      181 aaagtatttt actcattcaa atattccatt cattatatga tctaagagga aatctatgga
      241 atcctattat aaacttagaa aaaggataac tctgagtttc agccataaac tgaagtaatg
      301 cagatgaact ggacacatat gttgcacaat aggtgattca gagcaatata gcacatgctg
      361 ttttatgata tggaaagcaa tcaaatctta tttgcaaaaa attcagatca attgaatttt
      421 aatgagaagc aggtgctgga gtgtagcatc cacaaagaat tctgggaatg tttaaaatta
      481 gtcccatatt tgccaggaga cagttgggta cataaacttt tttatttctt gattcatggg
      541 tctgttcgga ctgtagattg ctctgccatt ctgagttcag caatttgaat aaattatgct
      601 gaaaatcact tggtggttca ttttgtgtga aattatattt tcgctggaaa ggttaatttt
      661 gaagggagct tgaatggctg gaaattgtgc agctggggag tctgcatgtt cagaaggcag
      721 cagttattaa aagcgattgc atttcctccc agatttctcc tgagaccaga atcagtggag
      781 atgttaaacc ttgcttgaca ccccagttgg ataattgtgg gtgtgggagc taatcagcag
      841 aagatgtctc ctcaatttaa atc
//
LOCUS       KCLJ01001156             350 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 129401cal ultra-conserved element locus
            uce-4752, sequence.
ACCESSION   KCLJ01001156
VERSION     KCLJ01001156.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 350)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 350)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..350
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="129401cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>350
                     /note="ultra-conserved element locus uce-4752"
BASE COUNT          122 a           65 c           59 g          104 t
ORIGIN      
        1 aagacagtaa atctctgtgt atgaacccac ttcaagataa aatccaaact tggagcacag
       61 atgcatatgc atcctggaag ccacataacc cagtcatatt ttattcacat cacactccaa
      121 ggagctcact gactggaatt caatagaaac tgttctctgt gtgaaagtaa tttcagaaag
      181 taatctagtt tatggaaatg aaaggcatca aaacacaaaa aacactgttt ctgtacaagt
      241 gctttgcttc aaatatttga catggaaatt tatataatcc ctctggggca catgggtttc
      301 acgagtgtta acatcttttg aaatgaattt cacaaatgtt tatttggaat
//
LOCUS       KCLJ01001157             800 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 129508cal ultra-conserved element locus
            uce-4658, sequence.
ACCESSION   KCLJ01001157
VERSION     KCLJ01001157.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 800)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 800)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..800
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="129508cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>800
                     /note="ultra-conserved element locus uce-4658"
BASE COUNT          210 a          170 c          191 g          229 t
ORIGIN      
        1 ggaactggcc cacggtttgt catcaccatg ggaggactgc gaggagggac accaattgga
       61 ggcacaatgc tagcaggtgg ctggacagaa actggtggaa tatttggatt ctcactgatg
      121 ggaataggtt tgggaactgg cgtggggatt ttagtgacag agcagttggc agtgtcagac
      181 ggagaggcag tggtagacgc tgatggtcca gggccttgaa tttggccagc tgcagacgct
      241 ggggatgggg cttttctccg agcatctgct agcggtatat tccaagaatc tggagtcagc
      301 agctgcaccc cagtgccttc tgctttattt tcgactggag gatgtaatgt actgcacagt
      361 ccagctggaa gattggcctg tgtctctttg tagaaaatgt ccattttgta ctgattgaga
      421 cattttgcac tgcagaactg aagccttctt tccccgtccc caaaatccag atactctttt
      481 gtgtgtctta tgtgcttaca ccagtcacat acctacaaca cagtaataaa atcaaatcag
      541 gtaagaaaag caatcttctc ttcatagtgt tattttaaaa gtaatttttc agttgctttt
      601 tctaacagga agtcgcattt gtgaaaactg caccatatta ataaaccctt ttctggctcc
      661 tcagttctac cttataagat gctttatatg tcttaaaccc aaagcacaga aaagaatcct
      721 cagctggcat aaactgttat aactaagcat gcaaagtcca tatgagtatg gctgtgatca
      781 ctccttgcct gtgccatctg
//
LOCUS       KCLJ01001158             499 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 129621cal ultra-conserved element locus
            uce-642, sequence.
ACCESSION   KCLJ01001158
VERSION     KCLJ01001158.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 499)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 499)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..499
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="129621cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>499
                     /note="ultra-conserved element locus uce-642"
BASE COUNT          154 a           81 c           86 g          178 t
ORIGIN      
        1 ctttcagtca aaatggggtg ggagggcagt cagtatttta aaacagctgt aaaaaaaagt
       61 tttgcaagtt taatcttaat aatctaaacc cagcagacac actctgtcat aaaataacta
      121 ttagtgacta gtttgtatcc tataaatcta acttgagttg ataatatggt ccattaccag
      181 ctaactgcac agagtatttt tcattttaca ctcttcagtt actttttagt gaagtgttaa
      241 aaaatatgaa gcttttctcc tctctaaaat tgcacactgt ctgtctgtta ttagggagat
      301 aacagctctt ataaatgttt cagtaagcgt taagtagaca gttatgtgca ctctcattcc
      361 acgcttattt gcttactgta ataaactgat aaaatatgtg tggtttgtct gtgtgtatct
      421 gcaggcatca tgagtcacat agatttcctt tagaaataat gttgtgtctg cagaattgat
      481 tggttatttt cataaacca
//
LOCUS       KCLJ01001159             754 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 129730cal ultra-conserved element locus
            uce-4428, sequence.
ACCESSION   KCLJ01001159
VERSION     KCLJ01001159.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 754)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 754)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..754
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="129730cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>754
                     /note="ultra-conserved element locus uce-4428"
BASE COUNT          140 a          183 c          227 g          204 t
ORIGIN      
        1 ggaaaatgat ttggttaatt acttttacct tgtactgaga ctcgcagttt tcgttccagt
       61 cggcgactcc aatccctccc ctggctttga ggatttctct ctgttcattt gctggagtat
      121 tgagttcaat tcactaatga cattagcctt ggggcctgag agaatcgggc ttttcacctc
      181 cggcacgtcc ccccaaagct tggatgtcct ttgggggaca gctttcgcca ggttgggctg
      241 ggcactgatg ggaggcgggg gcggagcggg aggagggatc acaaagctgt ctacagtttc
      301 ctcgatcagc gcgtccttgt aaagtgcatt gcttttgttg attatgggct tcatttttgg
      361 cttaggaggt actgggggtt tgtccaccag aaatgtttgc ccatctgcat agactgtaca
      421 agtatccacg ttctcccccc cttccgagga taaggtagag atgctggaca ccgttgagat
      481 agtgctggtt gtctctaggt gatggtcact gctgctccga ctgtcgacct cctcgatccc
      541 agagtcggcg acgttgtcga agctgtcggg gggtggcagg aaggatgcag gcaaacagtt
      601 tgagagaccc acttgctttt tgccatccaa ggagtttgct ggctggctgg ggaaggggtg
      661 ccattcttcc tctgcgccat caggtctgtc agcgccgagc cgggcaccgc gcggtcgtcg
      721 gggatgtcga agctgttggc aaactccaag ggag
//
LOCUS       KCLJ01001160             355 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 129843cal ultra-conserved element locus
            uce-5702, sequence.
ACCESSION   KCLJ01001160
VERSION     KCLJ01001160.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 355)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 355)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..355
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="129843cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>355
                     /note="ultra-conserved element locus uce-5702"
BASE COUNT          130 a           56 c           53 g          116 t
ORIGIN      
        1 taagatcctc taaaatcaat gagaaagcag agcttgaaga aagcacgaga gagggaacca
       61 tctcatttac agctggggat gcctttacag atttttattg atggcattta tcccatggtt
      121 taacatgtta attatactgt aataaacatg gctttaatat taaacttttc cttattatcc
      181 aaagtcacca cagtccattt cagtaaatat aaaaatatat acttaatact ttgtacaata
      241 ctggtttttg gtccaaacaa aaatggatca gaaaagccaa taaacttact ttaagaattc
      301 ccaattttaa agattttcta aatggattta ggcaactttg aataatggga tttac
//
LOCUS       KCLJ01001161             578 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 129945cal ultra-conserved element locus
            uce-2447, sequence.
ACCESSION   KCLJ01001161
VERSION     KCLJ01001161.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 578)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 578)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..578
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="129945cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>578
                     /note="ultra-conserved element locus uce-2447"
BASE COUNT          192 a          112 c           98 g          176 t
ORIGIN      
        1 gaataactgg ttaaaaagca acaggttcac ctaaagcaaa tgcaaatacc caaccacagg
       61 ccaaaacact gtacaagtga aaacattcat tctccaccta tcgtttgcta atctattgca
      121 aactgcgcta tctgggtttg gaacatctgt ataacaaatg ataatgtaga atagttgttc
      181 tgggccttta tgaggcttgg tgttgataat ctccaaagca cacccatgat tctttaaatt
      241 aaacataaga atcttgtctc acagtacagc taggttatcc atgtgtaaga gcccaagcca
      301 agtaattaca catccgctca aaggattaga cacataagat ttctttaaat ttttaataaa
      361 agtgcacagc tgttgtactc ttttgttcta gaaaaaaacc attaagctca aagtgattca
      421 cagttatgct tcgagaaaag tactttcaaa gtatttctgt taggcacttt ttttagtaga
      481 tttaacatca ctttaacctc atggcaacag atttgagcca ggataagctc atggagaggt
      541 atttggtcaa gttttaaaga acactctgct tttccctg
//
LOCUS       KCLJ01001162             592 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 130053cal ultra-conserved element locus
            uce-5888, sequence.
ACCESSION   KCLJ01001162
VERSION     KCLJ01001162.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 592)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 592)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..592
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="130053cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>592
                     /note="ultra-conserved element locus uce-5888"
BASE COUNT          217 a          103 c          127 g          145 t
ORIGIN      
        1 ggacacctca gagagaagtg ccaagcttga ggaaacagcc aaagggaagc cggagcattg
       61 tggtcagagg caaagctgac acccatcaga gccaatgaca gccagctctg agctcagtga
      121 agaggaggag atagtccgca gaatgcttca cataaaacgc tcactactaa ggaagtgaga
      181 ggcgagagaa atttttttga aaggagagga aaagccagac gtttattctc atcatcaaag
      241 ggaaggaaga agcaaatgaa tcagaaatca aagattgaat atcattggtc ttgctgacaa
      301 agcaatcagc aattccctca cagcaagtat aggggtttgt tgaacaaagc aaaggaattt
      361 gaaagtcttg aacaaaatac ctttccattt ataaaattag acgtaatttt agaacaacat
      421 tttgatttag gagctgtgaa gaatttctgc attaaaaaaa tccaaatttt gtgatgtgca
      481 attaataatg actttgtcca aaccctcagc ctcctttgta attctcttaa gaaagcatta
      541 aatgagggta ttttcactta agttgaaaat caatgacact tcaatgaagc at
//
LOCUS       KCLJ01001163             552 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 130161cal ultra-conserved element locus
            uce-7129, sequence.
ACCESSION   KCLJ01001163
VERSION     KCLJ01001163.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 552)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 552)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..552
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="130161cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>552
                     /note="ultra-conserved element locus uce-7129"
BASE COUNT          164 a          101 c          104 g          183 t
ORIGIN      
        1 agggcaactt taagaagaaa gataaaggaa acagtgaggt tttttctgaa aagcccagtt
       61 cagctttacc ccttgcagag caataattta ttcaaactac agtttaaatg tctcctcaaa
      121 gagtaaaatt ataaaaacga tcatgaaaga aatgcccatt tatacagaaa ttatagagaa
      181 gtctctcgtc tttatcaagt ctcaagtgta tttgcactta aaagcttctt tgccaactag
      241 aaacaatagt gcaggtgcat tgcccttcag tgaacaatgt atttatcctg ggaggcagga
      301 agttggtttc acacctgttt cttcttttta tttgttcttg gcctggctaa tttgccgaat
      361 gtcatgattg gtacagctga ggctgtcaga aagaattacc actttgtaac atgacggcct
      421 aattctggca gttcagattt tacaatgatt tgccttttgt tctttctttc tgttttctgt
      481 actgcacaca aactgaatct gatcagtagt aacagaaaat aggctgcttt attagatgac
      541 tgtccctttt gg
//
LOCUS       KCLJ01001164             525 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 130272cal ultra-conserved element locus
            uce-7308, sequence.
ACCESSION   KCLJ01001164
VERSION     KCLJ01001164.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 525)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 525)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..525
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="130272cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>525
                     /note="ultra-conserved element locus uce-7308"
BASE COUNT          152 a          118 c          124 g          131 t
ORIGIN      
        1 tgggtgtgag ctgcctggca gaactaaatc tgggcttggg tttggattgg ggtgtggatt
       61 attaaccctt cacacagcag caccacaatt aggattgtcc ccctctggca gacacaacag
      121 aagtttctga aaaaatgagc aaataaacag aaatcaccaa atgtcttgcc tgcttttctc
      181 ccacacttac ttcccctccg tgtcaacacc aaacaagaca gactaaaatt aatggggaaa
      241 gcagcaatta gcaaattagg ttagcagcgt gttgcagtgt gccatggctg ccaggtgtga
      301 ggggctctgg caggatattt attaatggct gtcagaaaag tgacactttg atgaatgaag
      361 ctgggtaatc ggcaccctcc gacagcgagc actgagaggc ctcaacatgc taaactgcaa
      421 aatcaaacct ttctgaactg caagaggagc acggttttcc attagggatt tgaatgcact
      481 tctcctctaa atgctcctgt aacagctcta agttgtcagg ttgaa
//
LOCUS       KCLJ01001165             666 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 130380cal ultra-conserved element locus
            uce-2638, sequence.
ACCESSION   KCLJ01001165
VERSION     KCLJ01001165.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 666)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 666)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..666
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="130380cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>666
                     /note="ultra-conserved element locus uce-2638"
BASE COUNT          207 a          121 c          125 g          213 t
ORIGIN      
        1 tcaataacat cttttttgta gactcgttac ctctttattt acccttcaag atatttgctt
       61 ctgttttata gcacaatatg tattgaagag agacataaac tgggcaggga aatgccattg
      121 aaatgagaaa atagaaagtt aatggtgaaa ctagagtagg ctaaattaat ttactgatta
      181 tatgaccata tcccatcagt aagacatgaa ttattttgtt tacagtcttc aggttgttgc
      241 ctggccctgc tacccttcgc tgttttcaat ttaaactgca gtgattgtaa agagaagaga
      301 aaataaacca aatgttccca ttccacttat aaattttatg tttataatct cgtagccatc
      361 catggaaacc atgcctgtta ttcaagtgcc tcgcctcccc aagctgagca taattattac
      421 tgatacatct ggatgtttaa ctacctacta cagactcttg aattccttcc agatataaaa
      481 tatccattaa tagaggagtg gagaagagtg gagtcacagg gggaagaaga gaggggaggg
      541 tttatgtcta ttacttcaat tctcagagga tttatgcctt gcttagcacc acagggagta
      601 aaacactatt acctaagctg gtgtcattca gataaaagga tgtaatgtgc ctctttccac
      661 tttgtt
//
LOCUS       KCLJ01001166             435 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 130491cal ultra-conserved element locus
            uce-1506, sequence.
ACCESSION   KCLJ01001166
VERSION     KCLJ01001166.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 435)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 435)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..435
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="130491cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>435
                     /note="ultra-conserved element locus uce-1506"
BASE COUNT          158 a           96 c           70 g          111 t
ORIGIN      
        1 tatttctgag ctgttttatg tgcaaaacac aagttctgta aggtcttctc cacttagaga
       61 tacaagtata aaagttccaa acatcaatag atgagtgcaa tgatattcaa tctaagttaa
      121 tccccagaca tccaaatcca tgaataaaaa ttcatcagtt ttaaatacac tgagcctatt
      181 aagcaagaac aaaagcatat gcacaaaaga gcttttaata tatttcaaag cccacaagag
      241 ccacggtctc attaaaatta taaattacac aaacatggaa taaagattca aactgcagtg
      301 cagctaagca gattacagca aaccccgcgt tccatatgat aacacaccat ggccctccca
      361 gatgggggct tggaacaaaa aggccatcac tgcagctagg gaaaacctcc ttgtgatctc
      421 tgctttctgt tcagc
//
LOCUS       KCLJ01001167             526 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 130594cal ultra-conserved element locus
            uce-3366, sequence.
ACCESSION   KCLJ01001167
VERSION     KCLJ01001167.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 526)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 526)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..526
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="130594cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>526
                     /note="ultra-conserved element locus uce-3366"
BASE COUNT          153 a          110 c           98 g          165 t
ORIGIN      
        1 gctaatttca cagggtgccc ctaacactta tttcataggg aagcaactca aagtttttag
       61 aagtgcttat cctggatgaa atagaccagg acaccacaag cccagtccca ctgcttgcct
      121 ccccccagta taagcctgtt acacctgaaa gatttgttcg gaatgtccag tgggaacctg
      181 gaaatcgtaa taatttgtag tatcgattgt gtgaagctat gcagctgggg cctctagtga
      241 atagacagga atagacattt tattgattaa cttttacagt catattttca ggactctgct
      301 gcaacataat tttcacttcc cagctttgtg ctgctgcatc atgaaacttg gattcttctc
      361 tcttaacatt tacccacctg agagaaacag tacagacttg tctttttata gctgtactcc
      421 gcagaaatgc ataatatttg gtgtagtgaa ttcttttaaa tttcccctct gctgtcacaa
      481 taaaatgaaa aatcttcaca agtgatgtta gtaagtattg aataag
//
LOCUS       KCLJ01001168             759 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 130701cal ultra-conserved element locus
            uce-2013, sequence.
ACCESSION   KCLJ01001168
VERSION     KCLJ01001168.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 759)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 759)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..759
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="130701cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>759
                     /note="ultra-conserved element locus uce-2013"
BASE COUNT          198 a          199 c          146 g          216 t
ORIGIN      
        1 ttcagcctct aggactaatg gaaaacaggg ggctgcgctt atctacgtga ccccgaaaga
       61 atatgacatc tcactgcaat atatactttc ccatctgctc cctcctcctc atgacatctt
      121 tcactgcaac caagttcctg actaaagaaa taaagtgact ccatccattc ccagcagtta
      181 aggttaaaga gatgcactcg gttctaaatc tcagctgcta acgctctctt gacctttgac
      241 tcgccttagc atggcgaagt ttgatgggcc catgccaagc cgtcttctgt aacccatgag
      301 ttggttaata tactcccatt tctcattcag acagccaaca gaggcaaaaa aggcagcagg
      361 gcaacaaatg ctgtctcctg caaatgctct gtaataaatt gctctttcag tagtgcagaa
      421 gacagatttt tcctttgctt ctttcctcct tttgcacaga agtcaccaaa ggaaagctct
      481 ctttcccacc tggccccagc tgactgtgcc cataaatttg cctatgcaat gcctgtttac
      541 gggtcgctgc tggaacacgg agacgggtgc attttctaag cgctgggtag ataatcacag
      601 taattgatgt ttggagctac tcactcctag gagcataggg tctctttctc ccagtgaggc
      661 cctgctccat gttatcagtc cagcccataa ttaaatatca ctcttttaca atatgtttca
      721 ggttccttaa tgagtctaaa gcagaaatag tcacctctt
//
LOCUS       KCLJ01001169             377 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 130809cal ultra-conserved element locus
            uce-4257, sequence.
ACCESSION   KCLJ01001169
VERSION     KCLJ01001169.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 377)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 377)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..377
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="130809cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>377
                     /note="ultra-conserved element locus uce-4257"
BASE COUNT          116 a           88 c           73 g          100 t
ORIGIN      
        1 ggcggagccc gcaccagatg gatgcgggaa ccgtcgatcc caaaggataa gagggcttct
       61 accgtggtgt acgtgtcaat tgtgttccca tagacaatga tgttccctgg gcgaaagatt
      121 tctaagacat acaatgaaaa ccttattagt ataactcaga tgataataac gtggaattgc
      181 actctttgac cctcttgttt ctctgatgct atgaagcaaa caatgttacc tagcaacagc
      241 agctaagata attcagtgaa gaatctgtac aaaacatccc acaaagtagg cttaacacag
      301 aattcatcct gaccccataa tctgaatttg aaaagcctct attttgttct ccccctctcc
      361 ctaatttcaa aggactg
//
LOCUS       KCLJ01001170             306 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 130911cal ultra-conserved element locus
            uce-7567, sequence.
ACCESSION   KCLJ01001170
VERSION     KCLJ01001170.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 306)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 306)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..306
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="130911cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>306
                     /note="ultra-conserved element locus uce-7567"
BASE COUNT          105 a           67 c           60 g           74 t
ORIGIN      
        1 gcatagtaaa ttttaaagga aaaaaatgtg tcaggcaggc atgagctgtt ccctccctcc
       61 ccccctcttt cattagctca ctggcagggt ggcacttctg aacctcatta ctgcaggagg
      121 atttatgaag ctgaacccaa tggcaaagaa aaggcatctg tcaataattg tagggagctg
      181 cactcacagc tttgaaatct cattaagtat gcagttatca ggcataaaga tcaaaaacat
      241 tactcaactc cgacagaatc ttatggagga acattaatta gcaacaggcc tacagtacaa
      301 aaaaaa
//
LOCUS       KCLJ01001171             817 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 131015cal ultra-conserved element locus
            uce-3135, sequence.
ACCESSION   KCLJ01001171
VERSION     KCLJ01001171.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 817)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 817)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..817
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="131015cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>817
                     /note="ultra-conserved element locus uce-3135"
BASE COUNT          208 a          174 c          169 g          266 t
ORIGIN      
        1 atctcattca cttctgcatt gtgtcattgc tgtcatggag agaacaggca acttggagaa
       61 tttcctttgc tgttacctga tataccatta ttcacctctt atcattttag caaagtagtt
      121 atactgctgt cagaggtaat ggagagcatg ccgctaagaa aattggctgt aatttattta
      181 tcaattgttt ctgcatacca caaaaagaga ccatctactt tatggctggg tctaaggtat
      241 ctgagagccc ttgaagttca tggttttccg gtattctaag ttctacttat ggcttttcct
      301 gtatatgaca cacaacacca cccctgtggt cttcaaggct gatttcttct ttgctttctt
      361 tagtcacaaa tcattctgag gcgtccctta agtgcatttg tattgttaag tgcaccggcc
      421 tgatttggtg ttaattcaat ttgagtgccc ttaatatctt gcgggagtga ggcaatgcat
      481 gagagctgta ccttgtaaaa acaggttcca ggtctgcctg agagcaaagc acctttccca
      541 cagcaattta ccaaagttgc tgataaaatt ttcataagga aaccttttta gtctgaccct
      601 attgtgttgt tctaccatta agagttgggg aactgagact atattctggt gacagtgtat
      661 cactatctcc attattttag cgtatagaca gcctactgat gggtcacagc ctgcatcctg
      721 tcctctcaca gtgtggaaat ggctttcaga gctggagccc agaggcccaa gtatgccagc
      781 tgctgcgttc atatgtcaat acaactgaag tgaactc
//
LOCUS       KCLJ01001172             514 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 131127cal ultra-conserved element locus
            uce-560, sequence.
ACCESSION   KCLJ01001172
VERSION     KCLJ01001172.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 514)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 514)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..514
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="131127cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>514
                     /note="ultra-conserved element locus uce-560"
BASE COUNT          162 a          104 c           84 g          164 t
ORIGIN      
        1 tcacactcct caaggaccag ttggctgtgc aaacatttgc ttctgcatct ctttgaacta
       61 tcctcaaaac acccgtgtta taattggata cccttacctc cgctggcctg cgctgcatgg
      121 gtcatatatg taaacatcaa gctcaaataa caacccccaa atttaattta tttctaccta
      181 aacaagttct tttatcataa agcaataaat ttgtcttggt gctagcaatt tgttgcgggt
      241 gacataacac tgcaaattga ttaatcgcta ctgtacacga caaaatgaga aaagcaagga
      301 attattatga atagcgtcca tctgatacag tagggattca ttattcaaaa gtgttagcta
      361 gtggttagct atccccttgt tgcagattac attcatttgc agaatcctac atcatgctta
      421 cacaaatcaa caaacatgca tttattaaga catggaatga aagctattaa aatgtgaaaa
      481 attgcctttt tctttttagt caagttttgg tggt
//
LOCUS       KCLJ01001173             472 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 131237cal ultra-conserved element locus
            uce-235, sequence.
ACCESSION   KCLJ01001173
VERSION     KCLJ01001173.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 472)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 472)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..472
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="131237cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>472
                     /note="ultra-conserved element locus uce-235"
BASE COUNT          173 a          103 c           77 g          119 t
ORIGIN      
        1 aaactctaat aaaacaaaat tctatgaact gaaatggtat caactggtaa tagaaaatga
       61 aaacgagcta ataaatgtaa gaaataaaaa ctacactttt aacaagatgg taagtcacta
      121 caataacatg tgaagtcacc tatactttct taacacgatt gaaattacat tggtatgggt
      181 tttaacccgt aatgtaataa tctaaggctt taatagatgt acagtacaat caggaaaatc
      241 aacacatcat tcttatctat aaagcatctc tctcaagcat aaaaactcgc ggtaaactcg
      301 gagtatggcg agttctagaa ccgaacccgc gcctctccct ccgcccgggg cctggcccca
      361 ggcagcccct ggctgaacag agcaaaaata tcctttactg gctgcaacat ccaaaccaca
      421 aaaaggaatt cctttggatg aatccattct tagaacttga atgcacatct at
//
LOCUS       KCLJ01001174             701 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 131344cal ultra-conserved element locus
            uce-1371, sequence.
ACCESSION   KCLJ01001174
VERSION     KCLJ01001174.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 701)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 701)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..701
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="131344cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>701
                     /note="ultra-conserved element locus uce-1371"
BASE COUNT          223 a          132 c          134 g          212 t
ORIGIN      
        1 caggaaggaa ctgggctgtc agcttcatcc cctcaaaaag ccttccagtg ccatgagctg
       61 aaggcaggtt ccaattgtta agtcattctg gcccgagctg aatttaaagg caagctcctg
      121 tagctaacgg aagttgctgg aggcaactcc tcagcaaagg cattaaaatc atatgtctca
      181 taattattct tttgactcaa ttacccattt actctttatt tttatatcca gtggaacctg
      241 agggcagcaa atggggaaca aatcctgtat aatagttctt gttttggtac attcacttag
      301 tggtgattta ttaagggctg ctgaataagc ctgattaaaa tgcataaaca gttctgaaca
      361 gtaaacaacc atgtctaagg atgaaaaaat gggacccaca tgctgtgcat ggaaattgcc
      421 cttaacaaca tggcctattg ttgaacagat aggaagccaa aggttgcttg taatcaaatt
      481 tgaagtttcc catcacttat aaaagcaaca cttccttgtg taaacgtttc aatttgttgt
      541 tgttgaaaac tgcttcctga cttaatccct acaggaacac acaaattctt tgattgtcag
      601 gtagaaagac aattttagat aaagtaactt ttagatttag actaagtaaa ataaatatgc
      661 tgcattcctg cagcagtaaa atcttttctg agattaatta g
//
LOCUS       KCLJ01001175             841 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 131453cal ultra-conserved element locus
            uce-3541, sequence.
ACCESSION   KCLJ01001175
VERSION     KCLJ01001175.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 841)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 841)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..841
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="131453cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>841
                     /note="ultra-conserved element locus uce-3541"
BASE COUNT          226 a          236 c          177 g          202 t
ORIGIN      
        1 cacgaggctg cccctgcctg gccgtgtatg aatgaacaga agtgcctttc atcccccact
       61 tgcctggcgc ttcaaaagga attacaaaaa tagcagccac aaaaatccag ctgcctgcca
      121 aaaggcccgc acacgtccca ttctcacagg catgcaaaag gttggagagc tcagcagaat
      181 ttttatgtac gggagcaggc ccaaggaaaa ctcacacgcc ataaccaatt gtggacagag
      241 gatcatctat cagcagacaa atgcaggaac tccagaatgt ctctcctcaa atgaaataat
      301 atatctttga aagccaatgc ccgttttagg cctgaggccc atatatcaag cctgagaggc
      361 ttgtggatac gctccagggc cattaacctt ccacctgttt ccccttgtcc ttcaggatga
      421 gaccctgccc ttgattttac tcccttcccc tgttcatctt ccgacagagt gtaaatgtaa
      481 agcagagggc ctgcgaaata attcaaaggc aatggaccag ggacatggtt acaaatctct
      541 gccactggca ctgtgactta tgcaggcagt ttgtcacaca tgagccaggt gacctctgtg
      601 acataacaga gaaaaatatc gcccgagatc aaaagatgag attcagagca ctctaagtaa
      661 ctctggtgta cacagccacg ctgtgcggtg gccaagggtt cctctcctcc ccgtgctgct
      721 cgctccctca ctagcgggcg agacacactg ctgctaattt cagtaatctt tttccctcat
      781 ctctttggaa atctttcctg taacctgaac atcaacattt gtctccttct gaagcccctc
      841 t
//
LOCUS       KCLJ01001176             642 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 131565cal ultra-conserved element locus
            uce-5593, sequence.
ACCESSION   KCLJ01001176
VERSION     KCLJ01001176.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 642)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 642)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..642
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="131565cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>642
                     /note="ultra-conserved element locus uce-5593"
BASE COUNT          181 a          152 c          139 g          170 t
ORIGIN      
        1 agaaatacca tgggtgggaa ttaagacgtt ttcatttcct ctttcttgtt tgttacttgg
       61 tctttctctg gtaaaaaaac aacccaacaa caaaaaaccc agctgcacct ggggttttac
      121 ataaatgttc tcttgcactt caactcgttc acctcctggc aacactaaaa tacggtgtac
      181 tctctcttta agagagactg ctccctgccc agctgttgac ttgcctgaag gtgagacctc
      241 tgcttaaatt catggctcca gctgtcaaaa gcaaagaaaa gcagcttttc cttggcggct
      301 ctctgctttg ggtagaattt gacatcttcc tcagtcagca gaatttaatc agcatcaagt
      361 gcccacagcc actcagctcc accacggctg gggctggggc taaccagacc tgcgaaggag
      421 aagaggggga gagtcttcaa cacagcagac acaggcacaa tcacatgttt ctatgggaaa
      481 tccaaagctt gtcaccatct agggagaact tcattatccc atttgactta agaattgctg
      541 ttatcatgca gtaaccttac ccggttcagc tgagcagctg agagcagtaa atggagtgag
      601 ttattgacag ctaacaatta taagtaaagc tggtgaaatg gg
//
LOCUS       KCLJ01001177             573 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 131677cal ultra-conserved element locus
            uce-3476, sequence.
ACCESSION   KCLJ01001177
VERSION     KCLJ01001177.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 573)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 573)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..573
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="131677cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>573
                     /note="ultra-conserved element locus uce-3476"
BASE COUNT          177 a          112 c          113 g          171 t
ORIGIN      
        1 ttgtaacaag cagaagtgac tcagttcctt aaataatggg acatgttttt tatttcttcc
       61 actctttatt tacttgcagc ctccactgtt ttactgcaaa aactgtttgt aaagcaggaa
      121 ttgtgctgat ctcatcaaaa ctcattaata taacttgttt ttccattatt agcaccatct
      181 gagcctgttg aaagccttaa ccagggcttt aatttttcca cagagagctt taaattaatt
      241 agtggtttac atgctaacaa agaatctgat acattcataa atcaatctaa tgcagaagga
      301 ttaccagagg gtggaaactt attcagtggg gagcacacat tcacttaaca tggtgtgttt
      361 tcaacaaaag ggtgcaggtg tgggatggat gggcaccagg aagagcccat gataatcact
      421 ttgcatcact taaaggcgca gcaggacaca tggtaaatca gagcctaggg cccaccctaa
      481 gtgaaaccca tgtagatata aaaggcagta gcatcccact ttaaccttca cagctaaatt
      541 gccagagtgg tgcaatttct tttatgtagg tta
//
LOCUS       KCLJ01001178             695 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 131787cal ultra-conserved element locus
            uce-648, sequence.
ACCESSION   KCLJ01001178
VERSION     KCLJ01001178.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 695)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 695)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..695
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="131787cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>695
                     /note="ultra-conserved element locus uce-648"
BASE COUNT          219 a          132 c          130 g          214 t
ORIGIN      
        1 ccttgaatgt ggacatttat gtattctcat tattcagacc ctcctgatgc cacaatctcc
       61 cacttctata gtttataaat gtttgattta aaatatagcc attttatcat ttgtaccaca
      121 tttacctcat cttaccactg ttctgactgg atgagaagct aatgtagcct acactgtctg
      181 gtcaattatt gcatggacac cagggaccaa ttaatgccat ccataaaagc ctgaatcatt
      241 ctgtcaatta actagaacta actatgtcat cagatatatt actggtgagc aagtctattt
      301 ggttgcaata tgtcttgaag gagagcagta tcaaatgaat cacaattgac ttggacaact
      361 gctagcataa tttcagaaga tgaaaagaca aatgtggtag ttattagtgg tcccctgagg
      421 aattacggcc aagcaattgt aatgtgctaa gactgtacta gcaggtgccc acagcacaaa
      481 ccaggcagag ggttaaatca atattttcaa tttcttggga tcaattcagt gtttgaacaa
      541 gatggaaact tgttagcaat tggcagaatg tgtaaatgaa aagccaaact tcttattatt
      601 tgttaaaaag gaatcagtgc tctgcatcat gcccttggca caaggtaatg ctttcatgat
      661 ccagttgctt gggcattcac taaaaatcta gcagt
//
LOCUS       KCLJ01001179             714 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 131900cal ultra-conserved element locus
            uce-337, sequence.
ACCESSION   KCLJ01001179
VERSION     KCLJ01001179.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 714)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 714)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..714
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="131900cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>714
                     /note="ultra-conserved element locus uce-337"
BASE COUNT          243 a          128 c          128 g          215 t
ORIGIN      
        1 tttgcagaaa ctgatgcaga gattattttc ttcagaacta atgaaacatc aagttcattt
       61 atccaatttc caccaaatgg aaaacaaaaa tcactctgca gtggtgacat ctcaatcctt
      121 tgactgtgtg atttagtcta gccaggattt tgaattctga attctgtagt agcacttttc
      181 tgttaatatg gacttattac ccacttgcca cttagtttat cagtcagtgg ttaaatccag
      241 ttctatcagt gaagtaaatg cctacacatt atcactctgc agcaggctgc caacagagac
      301 agtcttgtcc tagtcattaa caagcacaat gtatgcagaa caccagaggg gaattaaaac
      361 cacaaaaaat acctcagggt ggtattttta atatgagaat ttaatttgta atttcacaga
      421 ttaagaattt tggctgcatt aatcctttta tcagctcaca gcaggttatt tgcagaagca
      481 taaccataag gcgatattca ttggcagaaa cacgtctttg cataacgtta aacatcagga
      541 gcagtgaaac cttttgaagg ggggagaata aagatgaaaa atcattatat tttaaagcaa
      601 ggttcttcta aatgcctcca gtaaaatttt gagttacaga aagactattt ctgtgtctag
      661 gagataatca ttatgaagca taaatccaga tgcaagaaag gacaatccca gtat
//
LOCUS       KCLJ01001180             921 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 132011cal ultra-conserved element locus
            uce-2042, sequence.
ACCESSION   KCLJ01001180
VERSION     KCLJ01001180.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 921)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 921)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..921
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="132011cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>921
                     /note="ultra-conserved element locus uce-2042"
BASE COUNT          305 a          139 c          165 g          312 t
ORIGIN      
        1 gggattgaaa ttgcttaaat ttgttgataa ctcccaacat ctgtatcaat agctttattt
       61 ccatctgata atcattgctg cttggttgtt atcaggactt ttggggtgct gcatatgtta
      121 gttttatgtt gccattgtta ttacagtctt atacaacaga ttcagaatat taaacaagta
      181 caattgtttt aactactgtg aaattgacag atgaagctga aaaccaaaag cacctttcat
      241 gggattttaa acactatttt cctccatatg ccatcccaat tattatttag atattacatt
      301 cctaatttac tgttaaggtt gattagaatt caagcctctc aaaagcatgc accaaaggtc
      361 ttgggctgtg gaaaacattt ttataaaata atccattaat gcagaggagt gcaactaaat
      421 tagttagcaa tttgctgagc atgaattaat gaacagagct tctcccagct cccagagttg
      481 taattttcat aataacctca gacctttatt tggcaggttg tttagttttt tcgtttgaag
      541 gttttcatta gtctaatgag gactgtgcaa gggcgagcag tcagcacaat ttacatgggg
      601 aagctatcat aataaatgaa gcaatttgaa taacacgcaa gggtttatgc aacaagataa
      661 gaagagattg tagagtgaga tttagaggta accaatacat tagaccaact aataactgaa
      721 gtaatcccaa taaaaggctt aagtgaaagg aatgaaatta atgatatata caaaactgta
      781 atgatatgat acatgattca ttagattaat aaaataagtg ttcaattgtt tttagtgctt
      841 ttagtccaag ctttgtttgt atcaagcact ttaattagga ttgttcactg gatcactttg
      901 cttagttaag ttttagacca t
//
LOCUS       KCLJ01001181             403 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 132124cal ultra-conserved element locus
            uce-3742, sequence.
ACCESSION   KCLJ01001181
VERSION     KCLJ01001181.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 403)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 403)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..403
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="132124cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>403
                     /note="ultra-conserved element locus uce-3742"
BASE COUNT           85 a           82 c          132 g          104 t
ORIGIN      
        1 tgggatgtct ggagcgggag ggatttgatg ccataaggga gcaaggtgct gtgcgaatac
       61 tctgtctcgt aggagttcat gtccagtttg ttggcgctgg gctgctgcac gggcgtcacg
      121 aaccagcgct gaggagagct ggccacctcc tcgttctgct gcggggacag caggccattg
      181 ctctgaggga cagttctctc gccgttgtaa aacctggctg ggggcaggtt gttgacaaac
      241 tgttcctgga agaatggctg catgctgtat cgggcaccag ggacgatctg gtgggatcta
      301 ggagaatccg tgggagatgg agttaatctg tcattttcgg aagctgtgta catgctacac
      361 aattgcgcta cttaattaga aatttaattg gtgatttagc aag
//
LOCUS       KCLJ01001182             722 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 132232cal ultra-conserved element locus
            uce-6468, sequence.
ACCESSION   KCLJ01001182
VERSION     KCLJ01001182.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 722)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 722)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..722
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="132232cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>722
                     /note="ultra-conserved element locus uce-6468"
BASE COUNT          223 a          139 c          127 g          233 t
ORIGIN      
        1 agacattcat atggacactg gaattaatca gactcaagtt tgccttccct taaatcaaag
       61 ggtcatgtga aggtggggag aagaatttgc agaggtaagg actgcattcc taattttgca
      121 tgagataact cccagtgcct tgaactgctg attattacaa tcaccaacag acatacatat
      181 tcctctcaca tttgtattca ttttattttg acttgactgg aatcataaaa ggaatgtgca
      241 aacgaggaga gcctgttgct gaaatgaagt tgaatttttt ccccacagaa acttgggttc
      301 atgacagctt tttgttgggc aggacattag ccttttgtaa tttattgctt ttagattaaa
      361 tcttgggaaa ctcaatattg cagttgaatg attagagcaa taccccttgg agtaataaat
      421 tttctttggt gctatgcatc tcccgatcat gtttcccttc taattacatt tacataaatg
      481 atattctgca aaattaaatt aacattcaaa ccgttatgct ggcaaggaga gacaaaaatt
      541 agttacaaac ttaaaaaaat gaaatgacac ctcgttcttt ccacaaactg aatcatatct
      601 atcccccaaa gtgtctcaca tgcaattcat tattctagtt ggttaatcac gacctagagg
      661 ctctgcttcc cctttttcag aagtttaata gtgcaaggaa ctgctttcca cagggtctca
      721 tt
//
LOCUS       KCLJ01001183             493 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 132343cal ultra-conserved element locus
            uce-6407, sequence.
ACCESSION   KCLJ01001183
VERSION     KCLJ01001183.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 493)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 493)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..493
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="132343cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>493
                     /note="ultra-conserved element locus uce-6407"
BASE COUNT          164 a           80 c           88 g          161 t
ORIGIN      
        1 aaaaacttaa gaacaggtat gcgatggtgt tcaaagaaaa tgcagtttag cacaagaaat
       61 gctgaacctc aatttttagc agtgacattt taatgatagg aagtctgcaa aattatttgc
      121 catcaattgt gaaggcaata acaagccttg gtggtttttc acaccctctg tgttaagtgc
      181 tttcagaatg acagcgtaaa ctgtgttgga gaactccaag gaagtaaaac tgattaaaat
      241 gttcatgctt gaatggtgct gatggaatag ttcatttgga ctttctctac ctcctgcagc
      301 tcaagctgaa atattaaaat tcagtgaatt taaatctctc tcccctcagc tcaggaaaaa
      361 aacattacat tttaataggt tttaaactca taattcattg gtttggagca gcgctattaa
      421 atctatttaa atattacgtg tattactaag gaaatgattg aaataatttt tctttaccat
      481 tctatgcatc tga
//
LOCUS       KCLJ01001184             764 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 132455cal ultra-conserved element locus
            uce-1304, sequence.
ACCESSION   KCLJ01001184
VERSION     KCLJ01001184.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 764)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 764)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..764
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="132455cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>764
                     /note="ultra-conserved element locus uce-1304"
BASE COUNT          208 a          170 c          201 g          185 t
ORIGIN      
        1 cccccagctg attatcaact tcatgcatag caaatgacag agcgggaggc gcctccaccg
       61 ctctgcccga ataaaatatt tacagactga caggctaatg gacactttgc caaagagccg
      121 ttcgaaagaa gtagtaaatg ggcccgtgct gatgcagggc agcgggcccg gtcagggatc
      181 aggacacacg gcaccggatc ggataacatc taattggcag gtcacatcca aatgagtgta
      241 gtcatgcatc atccggaagg ctttctgctg gttataaaga cacttgtaaa caattcagcc
      301 gctgaacatg gcaataatat gttgatccgg catgtaatga ggtgttcctg gaatcaataa
      361 gctagtcatg aagagcaggg agcaaggtca gcgcctgcct ttttgatgac ctttgctggc
      421 tggtgaggac atcatatact ctgaagagga cttttctcat attgcagaag gcgccgagtg
      481 tcagaacttc cattcgcagc aagcaaatga acagccgggc tctgcatgct aatgaagtcc
      541 aggctatttt ccaccttttc atctgcacat tatgctcttg actttggaga aggtgggaat
      601 taggttggac cctcgtgtca gactgcctga tggctcggct ccggaaaact ggtaattgaa
      661 gctgatgact gatgcggagg aggcctgaat ttggaaataa acagtttcaa gcactgcatg
      721 tcatttctag agagactgct gagtgaatgg aaatgagctc cgtt
//
LOCUS       KCLJ01001185             850 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 132566cal ultra-conserved element locus
            uce-3198, sequence.
ACCESSION   KCLJ01001185
VERSION     KCLJ01001185.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 850)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 850)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..850
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="132566cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>850
                     /note="ultra-conserved element locus uce-3198"
BASE COUNT          236 a          183 c          157 g          274 t
ORIGIN      
        1 ttttggaata ttactgtaaa aaactggaag ccacacttgt attcatttta gtggttatca
       61 ctgtaacagt taacaaaaga cacaaagaca tccataccca aaacagcata tgaagattta
      121 attttttttt taaatggcac atacatttaa atagctccta catttggcaa ggccattgtt
      181 gtggctaatg tatgtatttc tgaaaacaat gatacatttc cagtagtatc ttccacaatt
      241 ttttttcaat gagcaataaa ggaggttgag gtgggatgtg ttttatccca ccacattata
      301 tcattcctct ttttcctctt tgttggatgg caatcaggaa ccctcatgcc aagcttggga
      361 agcaacagca tctggttcct tggcagattc tgcaggcggt cttgttgcca gcctttaagc
      421 tgtgtctggg tctgctgcat ggtttggctg cagatgggct ctctgggttg ccttgtgctt
      481 atgggtgcca gttttggctt acctttgatt ctgaggactt tactcatttt tattcatttg
      541 tgaataagga cccatccaaa tgcttcatga aaccaatatc agagtgtacc aatatttaaa
      601 atgaaaaggg aaggaggtcg tttcccttcc ccctcccctc cccaggatga aacattataa
      661 tagcatctgc aaatggatct ggatctatca gtatttccat tataaatcag aggcttagag
      721 cttagccatg aatattcctc ccagaatgaa atgcaatgcg gccacttgta tcaaaacaac
      781 actgaacgtt ttttcagacc atctagcatt cccacactca cttccccttc cttccatttt
      841 gaagacacaa
//
LOCUS       KCLJ01001186             623 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 132679cal ultra-conserved element locus
            uce-3565, sequence.
ACCESSION   KCLJ01001186
VERSION     KCLJ01001186.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 623)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 623)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..623
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="132679cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>623
                     /note="ultra-conserved element locus uce-3565"
BASE COUNT          181 a          141 c          119 g          182 t
ORIGIN      
        1 tgctgagcaa tacacacagc agcaataatt atgaaagctc ttttctatac aaggaagctt
       61 caggctgact tacaaggtgc tgagtcaaaa ctcacccctc ccacagctga accctgccag
      121 gcaggatgct gtggaaattg tatggagttt gattataaaa ctgggcagtg gagagctgcc
      181 aggtcagcca tctgtcaaaa ccaaaagggc tctgcttttc cactattcta ggagctgtac
      241 aaacatcagt gacaagggaa caaaatggaa cctgtgttgt acaaacagga actttttgaa
      301 gtatttctac tttgaatttc ttccgtgttt gcacagttgg gaattttttt gccccttctt
      361 tgattgtact gacatttgct tcctgtaaag tgcacaaaaa ctttactgac cttacatcta
      421 ttgcttaaag catttcacca cctactcttt ttatgatttt gacaatgcta acgagcacag
      481 gaagagatgg tctgtgagct gcagcaatca caacagaaca tccctgttcc aatgctccca
      541 aagcagtttc aatgcagact tactcatcca cttctctgag gcctgtactt tcactccaaa
      601 gagagatgaa ttttcaaata ttt
//
LOCUS       KCLJ01001187             602 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 132790cal ultra-conserved element locus
            uce-6645, sequence.
ACCESSION   KCLJ01001187
VERSION     KCLJ01001187.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 602)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 602)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..602
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="132790cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>602
                     /note="ultra-conserved element locus uce-6645"
BASE COUNT          157 a          124 c          124 g          197 t
ORIGIN      
        1 atcaaaaagc agtaattaaa accttctgaa tgaaaggaac tttgatacca acatacaggc
       61 atatttgcta ctccttctcc ttaattatcc agcttcatgg caatcgggtt ctcatttctt
      121 gtgttttgta attgcgtatt cacccagctc tcatcacaaa gctggatgct tcggctttgt
      181 tttccctccc ttaaataatt tgtatgtaag gttcagcaaa tggaaccttg ctacttgtgt
      241 gaagctgcca tttaaccatg aagtgaaatg cttttatcga gtttgccctg cagatacggt
      301 ccgctgtggc actgctgtcc atatttggtg gctgtgcaag gagagccagg tggtgctgca
      361 aagcatagca cagtgaagcg tggacagatc taggtttgac atttgtcatc ctgtactgct
      421 aaagggaaga gaaaaatctg cttttccata tgcttatgct ttaatttttg cctgcagttt
      481 tgtccagatg gccctgtgaa cattgtttac tttaagatgc tgtcccagat gtttttgaat
      541 gccgatggat aaatgcaaca actgtggtat actaatacac aaattatttc cacaattctg
      601 gc
//
LOCUS       KCLJ01001188             622 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 132899cal ultra-conserved element locus
            uce-1191, sequence.
ACCESSION   KCLJ01001188
VERSION     KCLJ01001188.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 622)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 622)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..622
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="132899cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>622
                     /note="ultra-conserved element locus uce-1191"
BASE COUNT          207 a          116 c          110 g          189 t
ORIGIN      
        1 ttttttaaga cttacaacac acattgcatt tttaaaataa catcagggaa actctgaagc
       61 ttcttttgaa ggattacatt acagtttgat ttttatttat aaaacataaa ggactaatat
      121 atatcagtta ggacattttg cttccaaagt gcattgtaac aaaataattg gaaggcagtt
      181 gtggtgtgaa atatatgaca gctttacagg acataaaaag cagctttttc tttgtaatag
      241 tgtaattgcc ttaaaccccc caatcataat tgttatcaaa aaataatccc aaggaaaggc
      301 taatataagg tgagcagact attataagag ctctatacac tcaattcctt gaacggcaaa
      361 tgcagcccct caatctccca gtgcttttag tgtcagtcag agagcactca gtcatttctg
      421 tgcatcaagc ctgcagtatt gatttttcca ctgactgaaa cagccatata agcataaatt
      481 ttgcatgagg ctttcacttt gtagactctc ctttggtcag atgacacatg atgtgaacat
      541 gaagactgta taataacaat gcacggtcaa cctgcaggca ttaaagcgtg gtctctcaca
      601 gctttgaagg acaaaagctg ga
//
LOCUS       KCLJ01001189             799 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 133009cal ultra-conserved element locus
            uce-3104, sequence.
ACCESSION   KCLJ01001189
VERSION     KCLJ01001189.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 799)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 799)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..799
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="133009cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>799
                     /note="ultra-conserved element locus uce-3104"
BASE COUNT          245 a          180 c          146 g          228 t
ORIGIN      
        1 ggtttaaatc ccagtaacag gtttcatatg gtcgctataa catctcagtg tattaattag
       61 cccccaagca ataaaaatgt agccattcaa ggtcacagtt tgacttactt acaattgatg
      121 tataacttgg caaactctgc attcagctac ttcgtacaat agaaaatata ttgtcattca
      181 ggttaacaaa agactctttt ctttgccacc tcactacaat ggccctgcaa atgaacatcg
      241 cctgaataaa atcctaacca cattttcact ctcattaacc acagtagggt atcacacaat
      301 ttgcctggct cctacttaga ccactgtgca ccattttact agcagcagtt tgatgggttt
      361 tatggcaggt gatatatgga gtgggagttt cgggagtcgt aaacagaagc cacagtgtat
      421 cacaatgtgg tttagggata taatgactgt gttgtaaagc aaaggatgac aatactgcac
      481 taggcttgag gtagtgaacc aatagaccaa acagctcaac ataattcaag ctacaaacag
      541 agcatcctag gtgtgtgctg gccttcctat atctttcatt aattacccct gatgaatttg
      601 aataagaacc actaaaactg aaataaatct gcagccaaga gaaaaattat agagtttctc
      661 cttgtatttc ttggaagaag ttgctctccc cgtgcattca cagaccccat attgccagtt
      721 cttaaccagc cttttgtatc tccagctaga ccgtcccctt ggctgctggg gctgcgctca
      781 ttaacacacc agaacaaat
//
LOCUS       KCLJ01001190             342 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 133120cal ultra-conserved element locus
            uce-7581, sequence.
ACCESSION   KCLJ01001190
VERSION     KCLJ01001190.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 342)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 342)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..342
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="133120cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>342
                     /note="ultra-conserved element locus uce-7581"
BASE COUNT          115 a           43 c           61 g          123 t
ORIGIN      
        1 atacactttc tttcatcatt agattgttgt tgattacaat tagaaaactt atagctttga
       61 aattatcttt tttatgacct tgtggtagtt taaaagcaat acctcattgg ttaaataggt
      121 tttagttcat gcttcctttt agttaatgat ctgaaaacat attatcctga tttacacata
      181 aaatcatgct gaaaagcatg tggcattcac taggatatgt gtgtttaagt agaattaaat
      241 tagcagtgag agttattaaa gaaatcttcc ataccattgt ccagtggact gtgatctgta
      301 gagaaatgaa taataaatga agcagtgcat atgagagaag tg
//
LOCUS       KCLJ01001191             550 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 133220cal ultra-conserved element locus
            uce-5773, sequence.
ACCESSION   KCLJ01001191
VERSION     KCLJ01001191.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 550)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 550)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..550
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="133220cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>550
                     /note="ultra-conserved element locus uce-5773"
BASE COUNT          155 a          124 c          102 g          169 t
ORIGIN      
        1 cccactgtgc caggaggttt gtaagaacaa acgtggcatt ccacaactac ggcatctcgc
       61 taacgggctg aggcaccaga gttcagtaat gtaatataaa aagtaatggt gttagctaac
      121 acatccttaa taagatattg tctgctgctc tgccatatgc taccgagcag gctttccctc
      181 tgtggggctt ttgagttctc tcaataagat tatttcaaat actctaatcc tgaatcattg
      241 acatgaatac aaaagcctag tgacatctaa tagatgcctc ttagctttgc ttttcctctt
      301 gttcctttcc tttttcttct ctttttacct gacaaaaagc ttatagacac ttgggctctg
      361 tctctcagta ccagcatgtg ggtcccctca tgaaatataa aggaggaaaa agggctgaca
      421 tagggctgat aagccacaaa aggaccatag aattaaaagt aaatgccagt aaatcctacc
      481 ctgtacactc agttgttctt tttttcttta attcttccac tgccatgctg ggctaatgaa
      541 aaatcgtgct
//
LOCUS       KCLJ01001192             783 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 133333cal ultra-conserved element locus
            uce-3416, sequence.
ACCESSION   KCLJ01001192
VERSION     KCLJ01001192.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 783)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 783)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..783
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="133333cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>783
                     /note="ultra-conserved element locus uce-3416"
BASE COUNT          298 a          128 c          124 g          233 t
ORIGIN      
        1 cataagaaat tctagcctaa tcatgcaacc ttcatgttaa tttaaaaaat agtccttgat
       61 tttgaaatga agttgaaagt atagtgtcag aacaaagtga aagagttatc attagccttc
      121 aaatgtgaca aataagaaag acacaaacaa gtgtcaggat aattaaaaag gcattgttca
      181 ctttttagaa taaaaaaatg aattgcacga gaaatattaa gctaacaaag aaagagcaaa
      241 tatgagtaga aaaaatgaca gttatctgca aaattcataa atgtgtcttt tgtataaccg
      301 taatgatcat attttatgct gtcattttac atttaattgc tcaccctggt actttacttc
      361 atagcagcca tcagtacccc acagagccag atgctgaatt gcaaaaaaac atactgtgac
      421 cacagactta taggaaagta actttgctga gctgtggtgt atgacaagtt aatttttgca
      481 attatacttt ttccaagaat aaatgaaact gcaggtcatt actattctat atcattaaaa
      541 agaggcagaa aatgttcttg atcataaagg cctcaaactc attttatcat tacgttgaca
      601 tatgaaagca actttacaag ctgcttttgc tcaatgtgac ctaatgaaat aagcaccacc
      661 tcagctgaaa tatgtaaaca tcttgataca ttaagaagca cataactaaa gaatattgtt
      721 attattacac agtgctaacc catcatatgt caggagagaa atgctatatg ggctcagctt
      781 act
//
LOCUS       KCLJ01001193             753 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 133443cal ultra-conserved element locus
            uce-408, sequence.
ACCESSION   KCLJ01001193
VERSION     KCLJ01001193.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 753)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 753)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..753
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="133443cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>753
                     /note="ultra-conserved element locus uce-408"
BASE COUNT          214 a          154 c          170 g          215 t
ORIGIN      
        1 ctgccatcct cttccttcta gcccaagagg aggaaaacag gctcagattg gatgctcagt
       61 gctctgcccg agcaaaggag gggaacttgg gcatcacctc tcttaatatt cacgcccagt
      121 ggaccaggaa ctggattgca gttgtttttc agaatgaggg acatgtaaat tacatgtaaa
      181 tccaacatgt ttagctccac aagtttttat tatctttctc tggttaagaa gctttcaaaa
      241 tattacccag tcactgaagg ttctttaaga aaaatatgac tgctcgtgta aacaattaat
      301 ggttgttaag cgtggcagtg tatattatga caaacaacac atgctacatt atgccagctg
      361 gtgtaatgat gtgataatgt ctgactcatt aactctggca cacagtttac gatgcccttc
      421 tatgacagga ttaattgatt cacacataca ttaaaacaaa aataactaaa ctgaaattca
      481 gctggaagcc tggcttctca tttgtcatca gccctgttgg tggctgcagc cagtctgggc
      541 ccagtgcaga gccagctgag gtttgtcccc tgacctctgt tcaacaccat gagtatcttg
      601 tggaagggag gaagtgatac tgaagggccc ctgcaaggac tttcagttat tctgggactg
      661 tttggatcaa gtaattaagt tgaaaggtga aaataccttt ttgcctgagt aaagccaatg
      721 catggcgtct gtatggagct gagagctagt taa
//
LOCUS       KCLJ01001194             691 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 133555cal ultra-conserved element locus
            uce-2471, sequence.
ACCESSION   KCLJ01001194
VERSION     KCLJ01001194.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 691)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 691)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..691
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="133555cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>691
                     /note="ultra-conserved element locus uce-2471"
BASE COUNT          223 a          115 c          132 g          221 t
ORIGIN      
        1 ttaaatccat tttacatgat attgttaact tttttaactt gggcaccttt tgaggtcttt
       61 agtttgttcc atcagagttg ctttgaatta aaacacaagt aatccatgaa atgcatgata
      121 aaaagcacct gacaatttca agaggttaag tggccatgat ctgcactgta tgtactgcag
      181 ctggaaaaag atgcagtttg acacagtatc taatttgctg tgacattcaa gttttaaggg
      241 atatttaagg agatggaagt cctggctcta aacatatccc aacgtgtgct ggtctcctgt
      301 ctgttaactt actaatgaac catgattgag taaagtaatg aagagtttac agaaagcccc
      361 aggaaaccaa tttccaattt tgcaaccagc aggctttaac ttcactgcag tcttttttgg
      421 ctaggaggga acttggatac taaatgccat ttctgctttg tgaatcagac agacttttcc
      481 agtccctgaa tatttacttg ctaatgaatg tctcttctac agatccattt tatttccatc
      541 tgtagttgtt aaaaataggc tgaataacta aaaatgatta ctgagagaaa tgaaattata
      601 atcacaaaat cagaggcact gttagaatca tggtgagaag gaaattttaa tcttctctgg
      661 gatgaaccat ggaaataggt gaaaaatata g
//
LOCUS       KCLJ01001195             686 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 133664cal ultra-conserved element locus
            uce-1919, sequence.
ACCESSION   KCLJ01001195
VERSION     KCLJ01001195.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 686)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 686)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..686
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="133664cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>686
                     /note="ultra-conserved element locus uce-1919"
BASE COUNT          233 a          122 c           97 g          234 t
ORIGIN      
        1 tttttcagcc tattaagttc ttcagtatca aaatgaagcc tgctaaagtt agtaaataaa
       61 ggctttcagg agagctttat taaatcactt atgacttatc aagttaaaac tcccactcag
      121 atatcttaat aaaactttca gagaatatat ttaattttcc tggaaatcag aagccaatta
      181 ctaacttcag tagttactgt tggctacgcc actgatcaat ttgccaacaa cttgaattag
      241 ttctctaaag tttcggtttc tgaaggtcaa ataactatgt aactgcttaa taaagaagca
      301 aagaagtacc tctaaatatc tccaagctct gatgggctta tattctgctc cttaggtgag
      361 gtattagcaa agcttattta ttttcatttc caaggctttt atttgctcat tcccttgtgg
      421 taaagctgat ttccatgatg attcccttct taattttaat acccttttta ctcatcatat
      481 agacataaga attttccata aaataatgaa acccttccaa aggaaatgaa gacaactagg
      541 agaggaaagt aaactacagc ttactttttc ccaattaatt gatccactgt catatgcata
      601 tatgaaagat taaatgaaag gaaaataagg ttaattaaca taaaaaccct cactccttga
      661 gatgttgaat tttgtatttt atccat
//
LOCUS       KCLJ01001196             608 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 133775cal ultra-conserved element locus
            uce-1478, sequence.
ACCESSION   KCLJ01001196
VERSION     KCLJ01001196.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 608)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 608)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..608
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="133775cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>608
                     /note="ultra-conserved element locus uce-1478"
BASE COUNT          195 a           95 c          110 g          208 t
ORIGIN      
        1 gcttgaagga ctgaacatgc cagtagcaag ttctgcttca gacttcaaga gttagtgtat
       61 atctgttagt ctaatttatt cagtgtcgtt gctgtatcac aaccttctgt ttgattttct
      121 tataaactaa taatttcctg aatgaactaa tactgccata gccactagta cctctttttt
      181 tattgttgtg tatgcaacta aattgaaata tctttcactt gaaatattga ctttaatatc
      241 tcatttgaaa aattcatgaa gcctttgatg ttaaatccat actcaattta gccaaatgcc
      301 attagaatat gcaatatgcc tgaatacaga gagcattatt gtctgtgttt ctgcagaaga
      361 attacatttt atgactgtaa cgtcaggatc ttttttggat ttgttcatga agaaaagaaa
      421 gagaaaggca gcacattaga agcaaaatga aaagtggtat tgattaggtt ctcatttacc
      481 ctctctttgc ttgaatccct aaatgcatgg aaataagggt tgtgccagag caagtaacaa
      541 tgctctgtaa tgaatggaag aatctttaga aaattagtgt aaacacgtat gatagtgcac
      601 agatgttg
//
LOCUS       KCLJ01001197             343 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 133882cal ultra-conserved element locus
            uce-3341, sequence.
ACCESSION   KCLJ01001197
VERSION     KCLJ01001197.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 343)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 343)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..343
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="133882cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>343
                     /note="ultra-conserved element locus uce-3341"
BASE COUNT          141 a           54 c           46 g          102 t
ORIGIN      
        1 tgtgaacaat ttgtgccagc aaaagttaaa gcgtcaaaga aacctcttta aaatgctaac
       61 aaatttactt acaaacacct atatttatta tttcataaat aggcgcaaca ggttccataa
      121 aaaagattaa atacagacac agtatgaaga aacaataata catagccata tgtagaggtt
      181 ataatttagc tgtctccaat ctgtttctgc atctaataaa atatcaggta agcataaaag
      241 gacttaaatg acgtttacta accagtacac ataaagtgat tttcaaaaaa aaagcatttt
      301 ttaggcagta caaaataaat gtgtttgctc tttatcaaca tta
//
LOCUS       KCLJ01001198             532 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 133990cal ultra-conserved element locus
            uce-7704, sequence.
ACCESSION   KCLJ01001198
VERSION     KCLJ01001198.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 532)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 532)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..532
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="133990cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>532
                     /note="ultra-conserved element locus uce-7704"
BASE COUNT          185 a           87 c          104 g          156 t
ORIGIN      
        1 tttttctact gttttaagaa gtagaagaag agaaaaaaaa tattccatgt tcttggtgga
       61 gaggtacaga gtggatatta tctaaacttc cagtgaatca cagctgacag tgttgctatt
      121 tctaggccag agaatcactc tttgaacaaa atgcaattgc tgtgtctttt caacctgcgc
      181 ttcagcagag tgaaacagca ggattcccgt actgtataat aactgtcaga aacaatttct
      241 gctctgtaag tgaggtgaag caaaatgtca aaatatttga atacatttca ttgaggatat
      301 cttcttttaa attagtgaag gctagaggaa gagaatccta ttctctcaca taataaatat
      361 gcatggaaga gtggggccaa gtgaattcta ataaagctgg gtccttgctc attaatgtgt
      421 tagagaacaa caacaataaa acacaataat tattagttaa agaaatgcca gcactggcct
      481 tttaccaaga ctcctgaaca tataaatcgc aataaattta ggctgtctga ag
//
LOCUS       KCLJ01001199             362 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 134100cal ultra-conserved element locus
            uce-2510, sequence.
ACCESSION   KCLJ01001199
VERSION     KCLJ01001199.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 362)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 362)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..362
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="134100cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>362
                     /note="ultra-conserved element locus uce-2510"
BASE COUNT          119 a           71 c           63 g          109 t
ORIGIN      
        1 atgtctagaa atctggtctg tattccattc ctgcataaac tttaagaatc tttaaaagta
       61 tgttcaaaat tatgtgaagg gtaaaattat gaagttcccg cttggaagaa agtggcttaa
      121 attctatcca attatttgcc atggcaacca gctaaacaca aaaggactgg aatggatgta
      181 gagtactgcc tctataatca tcactgtatg tccttcaaat catggatatg cagcaccact
      241 atcccaatct acttcagggc cataaaccta cacggtaatt atatgctttg gaacacttca
      301 cttaagtgca ccaataatat agtgagcgaa catgttcttt aattctgcac ctgtaaatgg
      361 ga
//
LOCUS       KCLJ01001200             612 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 134204cal ultra-conserved element locus
            uce-7831, sequence.
ACCESSION   KCLJ01001200
VERSION     KCLJ01001200.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 612)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 612)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..612
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="134204cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>612
                     /note="ultra-conserved element locus uce-7831"
BASE COUNT          146 a          135 c          135 g          196 t
ORIGIN      
        1 gtgcttctgg attgcatctt tgcatatgaa atttcagcct agagctaatt gttactgttg
       61 atgaattata aactgctttg aacttctggc acattcttga gtacagtagc atgatcttgc
      121 tttcctggta aataagccat ataagttctg ttaagtcatc cacagttttc aaatcctcat
      181 gcatttcttt catgattccc ctgtggagtt atccttgtgg ttttgaaaag gatagtctca
      241 agtctgagcc tgtacttcca agtcttgctc tctgttgcct taggagttta caaaggttta
      301 gattgcatct tttcaatgca ttatggcact gcagcctaaa gccaatgctt gttttttaac
      361 tggcaacctg cctgtacgaa tggaggaagc agattgcctc tttgctgaac acttagacaa
      421 ggtactgatt taacaacagt ggacaagcag ctgggagctg ggctgtcagc ctgtcacaca
      481 ctgacaaatc tgttgttcat attcaggcag gatgttccag ttagattgcc atcagtatca
      541 tccatctacc agaggcgtgc gaggcgcgcc ggcgtctccc gcgctggtga ttcagctttc
      601 tggggaacct ca
//
LOCUS       KCLJ01001201             569 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 134307cal ultra-conserved element locus
            uce-6613, sequence.
ACCESSION   KCLJ01001201
VERSION     KCLJ01001201.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 569)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 569)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..569
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="134307cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>569
                     /note="ultra-conserved element locus uce-6613"
BASE COUNT          165 a          103 c          116 g          185 t
ORIGIN      
        1 tcactgtcct gaatagccaa tgtcatccac tgagtctgtt atttgcaaaa ttgcaataaa
       61 ccaaaaatgt tgtgtttgtg gaaatgaata gggggtggac ctgattttca tggcatgaaa
      121 gtcaagtgga gtttttaatt gactccaaca ggcgctggat caggcctgtg gggtgtttgg
      181 tgctcagtta caagttagtg ctctctctaa tcaccttgtt ctctaaagga aatagatact
      241 aaacaggaac catctggtaa tacattctgt acctcttaat tacaatgttt tgagtggcac
      301 ctaaataaat ttcatttaca agcacatgac tgcttgtcaa aagctctgtt gataatttta
      361 ttattgtagt ttaccttctc gcttaatgac cccggcccag taaagtcagg aatattcagt
      421 tccattgcag tgattgtctt tagaaagaca caaattccat ctctcatggt atgtttctga
      481 ttattttcaa attccacgtg acatggggat ggatctgcaa taaaaattac caaaattctg
      541 atttcttggt agagaggaga agctgaggc
//
LOCUS       KCLJ01001202             453 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 134417cal ultra-conserved element locus
            uce-4167, sequence.
ACCESSION   KCLJ01001202
VERSION     KCLJ01001202.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 453)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 453)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..453
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="134417cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>453
                     /note="ultra-conserved element locus uce-4167"
BASE COUNT          169 a           67 c           73 g          144 t
ORIGIN      
        1 atttttatac tcaaacttca gaggataaag acaatagaaa gtgcaaaaat cagctgaaat
       61 attttcagaa ataatttaat tctcatgtca ctgctgactg acagctctaa taaattccta
      121 cattttaagc agacttacat ttcacatgca tttgctctcc actgctgagc agagtggaac
      181 atctattgtc aaatgcataa aataacatta gaaatgcaaa cttaatgtag ccaatggtaa
      241 tgtgttattt aaaacttatg agcctgaata agggcttatt ttctctaaat tgaaatttat
      301 agtttcattt taaagtacta acttgaatat tgatgggctt caggcatgct gttataaaat
      361 gggaaagaaa aacaaagcaa gtaactatga ggcataaagc tgctattatg gtaatatatg
      421 gaaacttata taaaaagtgg atcctagtta cct
//
LOCUS       KCLJ01001203             552 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 134522cal ultra-conserved element locus
            uce-7793, sequence.
ACCESSION   KCLJ01001203
VERSION     KCLJ01001203.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 552)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 552)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..552
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="134522cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>552
                     /note="ultra-conserved element locus uce-7793"
BASE COUNT          156 a          105 c          111 g          180 t
ORIGIN      
        1 tatttatttg tggaacctgt ccctctgctg tagggttata ccttctagcc taatttaatt
       61 tttggggatg tctgaatatc accctgccct tgacataaag agcagtgtca gcctttgtgc
      121 cttgttgtgc aaaagcagag aatggtttct tatattcaaa gcataaatgc agcagcccct
      181 gagactgctt ggatgaggac tagataagag agttacatta gggcagaaat tcgggtcaca
      241 tcatatcaaa ctgaaagcat gaggccaaag ataggcttgg ctaataatat ttacacacaa
      301 tcatttaaaa tgtgaaaact tctgccatgt aagaagtctc ctttcagtct caagactgtg
      361 caggcatttt caataccact gtttgctaag catttgcatc ttctttgcat tatttattgt
      421 tatcctgcag gctggattgt cacattaagc atgatttatg tcactgaatt ttatcagctt
      481 ctgctagatg atattttcaa gtggtgccta ggaagagaaa tgtcagtgca agtcttttac
      541 acctgttaca ca
//
LOCUS       KCLJ01001204             593 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 134628cal ultra-conserved element locus
            uce-3309, sequence.
ACCESSION   KCLJ01001204
VERSION     KCLJ01001204.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 593)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 593)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..593
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="134628cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>593
                     /note="ultra-conserved element locus uce-3309"
BASE COUNT          193 a          116 c           93 g          191 t
ORIGIN      
        1 aaagtaacac atgctcagag atggataaca ttaaaataaa agtaggtgca atatccaaga
       61 tgaacatttc tcatgagcag acatcacgcg agaaagcatt ccacaggcat aactttgcag
      121 ataatcaaag ccaagtatta atacattttt atcagtccac cttctaaaca atatttcagt
      181 agatttcctt tcacacagtg atatttgtaa taaatgttct gcctttgttt taaagtcagt
      241 ccgtagaaag atgacatcag cttagcaaac aataaagtgc ctgtaatatt gtctccagag
      301 ggctgttaca tttactttgt agcagtaaaa ttcaattttc aaaaaacact acatgaatga
      361 tgttaggtta ttaaccctat caccaccgta aaacatcatc attgtgtgca gaatgtaggt
      421 cactatctag gagctagaag ttgctttttg ttaaataatc catttaagct gcttttcttt
      481 cctatagctt gggttgtgtc ccttcccttt gcaaaccaaa aaacagtctc atttttaatc
      541 tcaaggctct gagcaagcgt ccttattaca catctcattt taaggtgttc ttc
//
LOCUS       KCLJ01001205             839 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 134736cal ultra-conserved element locus
            uce-1490, sequence.
ACCESSION   KCLJ01001205
VERSION     KCLJ01001205.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 839)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 839)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..839
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="134736cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>839
                     /note="ultra-conserved element locus uce-1490"
BASE COUNT          254 a          142 c          184 g          259 t
ORIGIN      
        1 taccaatttt atgaaattag ttctgttcct ggatctctca ttctctgtgt gatgccttga
       61 cctggaaatt attataacag atgctcctca aagagtctca gagaggagct ttatattaaa
      121 atcaagcaat cagctagata gtttagttgt ctttatttga gaacagtaaa tctttttagc
      181 aagtggaata aaccagtaag aataactagg aaggcattta gggaattaca caaagggtgt
      241 gtggtttaga ccttttctgg aacgcaggct gcagtttagc tgtcgagtca ctatcattct
      301 cctcaaaggt gaaatgattt agaggcctag agaaacttaa tttttcttga tcaccatgtg
      361 caacctggaa ttttaatggc aggcataatt aattcttctg atgttaatca tcagggctgg
      421 gctccacaat tatcagccta gtgcagctgg ggcatggtgc agacatgaaa aattaggaaa
      481 atgaatcagt aatagggtgg cagatttaat ctgcatcatg aaaacaaagt taaaaagagg
      541 gagatcgaga gaatttcagc tgaagctttt gtgccaatga gcactgacag aactgaaaaa
      601 tgttgccgat gtccaaagtg attggtaatt accaagccat tgaatttttt attgtcaatt
      661 tatcattgcg ccagaggtta aatttaacat cttcttctaa agccatcact ctaggaggaa
      721 ggcaagcttt gcatcacgtg gaccaggagt cagtgaaagg ttaatcaggt attcctttag
      781 tttgtgtgtg cttccaaatc agtccttttg tgtcctttat gctgcataat accgtgggg
//
LOCUS       KCLJ01001206             367 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 134849cal ultra-conserved element locus
            uce-2083, sequence.
ACCESSION   KCLJ01001206
VERSION     KCLJ01001206.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 367)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 367)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..367
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="134849cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>367
                     /note="ultra-conserved element locus uce-2083"
BASE COUNT          139 a           62 c           52 g          114 t
ORIGIN      
        1 aaaccctttg tagttgttct tttattatta tttatgaaca cctaggcagt gaaaaccgtt
       61 atgttaatac atacatagac acacccaaaa catacaaaaa tactattatt tcaaactact
      121 aagaatagga caagttcagt tatctccatg ctatgacttt aagagcatta cactgaaaca
      181 aacaagaatt taaacgacaa ttttttaata tcccagaaat ataccaaaat atacatctaa
      241 gctttggaat tactgaggtt agactaatgc aagtgctggg taatcgtact taatacacaa
      301 gtctaaggtt ctgcaggaaa gaaattatct ttggtatctg catcaggcta ataatattaa
      361 catttgg
//
LOCUS       KCLJ01001207             703 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 134954cal ultra-conserved element locus
            uce-1480, sequence.
ACCESSION   KCLJ01001207
VERSION     KCLJ01001207.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 703)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 703)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..703
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="134954cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>703
                     /note="ultra-conserved element locus uce-1480"
BASE COUNT          211 a          168 c          128 g          196 t
ORIGIN      
        1 aaaagcttga ttttacaaac tatttaatgc actctaagga tactgttaaa agacagtggc
       61 atgctgatgt gagttgtaca aaggtcagtg atttggaggc tctttcagac aatttgccag
      121 gattttggca ttttgtaagc acacatagga cagctctcca gcaagctgac cttgacagtg
      181 aattggataa ataaaccttc aatttacccc ctccagctcg atgctagccc agctgatccc
      241 tctggagcct tcacctgtcc atatcgttca actgcctgca acttccaact gacgaacatc
      301 cacggcttta caggtcctgt gacaaacacc atctaaaaga taaggcttct gaaaagtcaa
      361 agtcaatagt gtttccattg aaaatttaat gctgcttcca tctttaccca tcattcttcc
      421 tactgttgca tgtatcccag gaggcacttc aagcaaaagc actactccat aacaggtaat
      481 gacatggcat ttaatgatac tgtccaaagt gatccaagcc catggaaagt aatgtgcact
      541 catgtaccag ataagcacag ctgaatgtac tagaacagca gtatctctca ctgctctgtc
      601 actagataca atgtgacata tgctctgcca ttgtacctgg cttttccttt tacttcacca
      661 tcagaggaaa agagcatttt cagatacaga gcaccaaagt gtt
//
LOCUS       KCLJ01001208             438 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 135067cal ultra-conserved element locus
            uce-5273, sequence.
ACCESSION   KCLJ01001208
VERSION     KCLJ01001208.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 438)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 438)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..438
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="135067cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>438
                     /note="ultra-conserved element locus uce-5273"
BASE COUNT          103 a          127 c           85 g          123 t
ORIGIN      
        1 aaatctctta attaactgtt acccccctga gccatatggc caccatgggg attttaatac
       61 actgctccat tttatgtcat cagttgcaag ccgtggattc actctcagct ctgaagtgaa
      121 aacacggccc atctgttggc gatagcgcgt attcttttct acatttcctg cattgcatac
      181 gatttcaaat atttgctctt ggaactgcaa ggtgtcctac tgtcataaca gtcaagttat
      241 tcattaagct gtcagcacct ttttccattc cccctcactc atcaccgagc gcggcccctc
      301 agaacgggtg caactgagat cctcatgtca acagaaaagc cctacctttt ccaccgccac
      361 ccccaatttc cgagggcact aatggagggc cagctctgat gcagttcttg gcacgcactt
      421 ctgagggccg tgaagtct
//
LOCUS       KCLJ01001209             697 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 135178cal ultra-conserved element locus
            uce-4138, sequence.
ACCESSION   KCLJ01001209
VERSION     KCLJ01001209.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 697)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 697)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..697
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="135178cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>697
                     /note="ultra-conserved element locus uce-4138"
BASE COUNT          236 a          117 c          114 g          230 t
ORIGIN      
        1 tcaccatttg cataacagtg cctaaaagaa attaaaaatg gaattggaac tttggcattt
       61 ttacttaaac gcagtacatg aaatgaagac attgcatgac tgctcatttt aatgtaacat
      121 ccattttgat tcttcatcac actgtacatc tgcccgcttt ccccagctat ctcatgttct
      181 gtagcatttg tattgtgctc ctgaggatgc tttattggtg aactacatta aattcatcta
      241 gaaagaactt taaaaaaaag ccttttcata tgcccttagg attacttggc tagacttgaa
      301 tcaatttatg catttgatgg ttagtttcag ttgtcatgga taaacaaaag ggtaactgtc
      361 tagaatatat caaatattgt ttcattttga aatgtatgtt tccagctata cacatctcct
      421 accctgtttt gtaaaagtat tctgctgata aaatgtagac ttatgtttga cagcttttta
      481 atcaagttca aagagaataa ataaaactaa tccagtgtgg taaagagtct gtctggttat
      541 cgatttgttc ataaaatgaa aaataaacca tgtaaataag atgtgtgaaa cacagatcca
      601 gaagcaaata tttaaagcaa ttaaagaccc caaaacatag gattaatgca taggtctgct
      661 gtacatgaga gatatgtctt caatatcacc tcagcag
//
LOCUS       KCLJ01001210             611 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 135283cal ultra-conserved element locus
            uce-6356, sequence.
ACCESSION   KCLJ01001210
VERSION     KCLJ01001210.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 611)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 611)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..611
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="135283cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>611
                     /note="ultra-conserved element locus uce-6356"
BASE COUNT          188 a          134 c          115 g          174 t
ORIGIN      
        1 taagtttgcc gctgatccat gctgtctttg aagctctgga ggcagctgac aacatgcatt
       61 taagggatgt cccccagcct ctgcccccac cagcctgcta ttaactcagt taaaatgtat
      121 atgaccatag aataagcatg gagcatgggt gagtaggaga gagggaggac ctcagggcca
      181 ggcagtttac aaacaggcat cacagccact ctgtcctttg ccccctctta catttcttat
      241 tacagtacat taaaaccctt tgctctgtca aattgacaaa ggcagctata aaaggggtcc
      301 tttctaatac acagtaatat aaactatgtt tgtacactta ccacataatc cctaattact
      361 tccatacttt tatgtgtgga gagctttgac gcttgcattg ctggatactt agtgaatgaa
      421 ataaaaatca gaaattattt ctgtataact atggggtggt atgtgaatta gcttctaggc
      481 tggcgacaga gctcacattt cagaataaat atactaagtg tcattgatac cctaagtgtc
      541 agataaaaaa ctatgacacc aacaaaactc tcatatgacc ctgacattcc tccagtactt
      601 aaagtaatta c
//
LOCUS       KCLJ01001211             667 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 135394cal ultra-conserved element locus
            uce-4179, sequence.
ACCESSION   KCLJ01001211
VERSION     KCLJ01001211.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 667)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 667)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..667
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="135394cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>667
                     /note="ultra-conserved element locus uce-4179"
BASE COUNT          195 a          157 c          167 g          148 t
ORIGIN      
        1 cagttctggc caccctcagc gcagacagac cgactgtatt ttatttcgtg cggatatcga
       61 cagatgagaa aattactgtg cccataaatt gaagctttgg tcacgtcagt tcaagaagca
      121 gaatagagcc aagaaaccag cttgtgtcag tcaggctgac gagcgcaggc gccaacaaac
      181 acacccctga gagacgcaag cacccgcacg catgcagaga ccccgctcct ctccatctat
      241 tctcagcaac tgtttgtctg aggccacatg caactggatt tgtcaagccc ccttttaaca
      301 acttcttgtc acagtccatt accaaattgc atatagttat atattccact aattaggctt
      361 ctaaaatatc attaacatgt ctcttgatca ttagcataac gtatgaggcg tcctcgttag
      421 gcacgactcg agtttgttaa tgcggtaatg aaaggcacgg ggctggtact gcaggagccg
      481 tgcagagata ggaggctggg aacatcaaaa gcatcagtgc caggcttcaa caagatcagc
      541 aagaagcagg ggcagaagcc aattgctggg aaaccagggt gatgtggaag gtgaaatctg
      601 gatacagctc aggtacagga ggatcacaga aggatctgag taaaatggga gctgtggcca
      661 gggtcca
//
LOCUS       KCLJ01001212             543 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 135504cal ultra-conserved element locus
            uce-7653, sequence.
ACCESSION   KCLJ01001212
VERSION     KCLJ01001212.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 543)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 543)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..543
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="135504cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>543
                     /note="ultra-conserved element locus uce-7653"
BASE COUNT          164 a          121 c           83 g          175 t
ORIGIN      
        1 gaagttctgc tgcacctgca ttcttagcca gttcctggtg ggtgacttta ataaaattgt
       61 cctgctccaa ttcttcctga aaaatacagt ttagagggag tattgtcaaa aattctgctc
      121 tactttatta tcccctcatt ttttttgtca tttaactcca attatgggat gctaagtgct
      181 tttggaaatt tcattgttaa tatcttctta cagtgctatt aacgtaaatc aacgttaata
      241 gtgtcccagc aagtacaaaa gcaatcaaaa attcagtact cacgaatcat tctgtaattt
      301 cagcataaaa tgttaataga aataaaatcc aataccataa aatatcagca aattcaactt
      361 taaatacatg tgatgaatgg ctttaccatt ctacagcatc ccgtggactt tgcaggggaa
      421 gcctcttctc agcaaaggtc ttgccccatc cctccctcct ccattgcctt cccagcacaa
      481 ggtgtgccca ggattttaca tttccagaaa ttaaaaatac atcctcactt aggatgtggc
      541 atc
//
LOCUS       KCLJ01001213             513 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 135615cal ultra-conserved element locus
            uce-4180, sequence.
ACCESSION   KCLJ01001213
VERSION     KCLJ01001213.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 513)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 513)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..513
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="135615cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>513
                     /note="ultra-conserved element locus uce-4180"
BASE COUNT          161 a          111 c           76 g          165 t
ORIGIN      
        1 ttgtggacct tcaaaatatt gcaagccaga atccattatg ctttatttgt attgctttgc
       61 aaggaaagcc tggattaaac tgatccttca cttttctgca ttcataggaa gttatgattt
      121 tgataactga gccactgtca attattcaat ccctgtaatc catctccaaa tgcatcttct
      181 ctcattacca aaattatcaa tcacctttgg ccaatgaaga aaactttgaa atttaatctt
      241 catctaccta catttgcagt ccttctggtt tttcgcaagt tcaaagccag gtctacattc
      301 acaggcaacc ccacctttgg gtgtctcccg gcagatgtgt gcacacccat gatctttatt
      361 catacagttc ataccctctg taaagaaaaa taatattagt attaaaattg caagcatatc
      421 cagtcataat tttatctgta acttttatct ggaccgtgtt ccacaagaca aaagaacaga
      481 gctgaaagga gatatatagt cataataaaa gac
//
LOCUS       KCLJ01001214             705 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 135725cal ultra-conserved element locus
            uce-1995, sequence.
ACCESSION   KCLJ01001214
VERSION     KCLJ01001214.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 705)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 705)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..705
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="135725cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>705
                     /note="ultra-conserved element locus uce-1995"
BASE COUNT          193 a          142 c          154 g          216 t
ORIGIN      
        1 ttttcccaat ttgacttgct tacccaatcg tatttttact tcagccttta ggcttgaaaa
       61 agcatgtgca taatcagttc attttgtgtg gtctaggcta taaaaatgcc ccctctgttc
      121 tttccatatg aaaaacgtgt ttttaatttt ggggaactta tataattttc tgtgctttct
      181 tttgtatctc agattaaaaa caaatgctcc cttcccctaa ctttgcatgt tccaattatg
      241 gagttgtgaa aataagtcat ccttcagctt ttgttacttt aaaacagcta tcggtgatgt
      301 cagagtcaat actaaaagca ttaagaatgc tggcagaatg taatgcagct gcaatccaac
      361 atgatgttgg aaatggggtt gagagcataa aggctttcca tattcccagg gcgcacaact
      421 gctcgcggcc ttggctttga tctcttcaaa ggctgctgcc tcctcctaga tggagagact
      481 tggctgccac tcgctcgcat tgaaaaaagg cagaggtctc tattcaggca gaaatcaatc
      541 actgtgcaga aacaattatg tgtaattcaa ccatcatgaa aacagggtga gattatgggt
      601 ttgttacctg agtgactgcg tggagatggg gagcagcgga cgcaggagtc ctgctgacat
      661 gccacatctt gatgacaatt atagacacat gaatgatgtg gcggg
//
LOCUS       KCLJ01001215             457 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 135837cal ultra-conserved element locus
            uce-7928, sequence.
ACCESSION   KCLJ01001215
VERSION     KCLJ01001215.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 457)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 457)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..457
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="135837cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>457
                     /note="ultra-conserved element locus uce-7928"
BASE COUNT          125 a          129 c          111 g           92 t
ORIGIN      
        1 tccgtgtgcc ccagggccgc ggaacatcac tactcgagag ctatggggca ggatagggag
       61 aggtggggct cctctcgttc gtcccccgat atctcaagtt gtgcgttgcg gtgagaaaaa
      121 gtgcagaaac aaggtggttt gtgaaggatt aatcctttgc ttgcttcaaa tctgaacagg
      181 aatctccaca caaatgcccc acatgtggaa gaacctttaa tcaaagaagt aacctgaaaa
      241 ctcaccttct tacccataca gacatcaagc cctacaactg tgagcagtgc ggcaaagtgt
      301 tcaggcgaaa ctgtgatcta cggcggcaca gtctaactca caccccgcgg caggacttct
      361 agagcagcca gggacccgcg cccgctccgg cagctccaac ttgcccactt tactcaagga
      421 gtgtattgta ggaactcaca gcacacacac acacaca
//
LOCUS       KCLJ01001216             386 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 135948cal ultra-conserved element locus
            uce-4081, sequence.
ACCESSION   KCLJ01001216
VERSION     KCLJ01001216.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 386)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 386)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..386
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="135948cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>386
                     /note="ultra-conserved element locus uce-4081"
BASE COUNT          137 a           79 c           58 g          112 t
ORIGIN      
        1 taaaaataag gataaaagtc tagctcatta tctccaaagt ctgggaaaac ctagactggg
       61 gaaactaaat ccagctacct ctttaacaat aatacagcag ggtgaaaaga tcaggaccac
      121 tttatacaca ttgtgctaat tactgtaagt acttaaagtt gtaattagct tattatactg
      181 cagagaacct aacatggcat ttctttcaaa aaaatttctc tccagatcat tagtgggaaa
      241 gctaacaaca tctgcttcaa ataaaatcaa ccaattagca caggcaactt cgcatagttt
      301 gcaatcagag aattatattg tgccaagtgc taatttcaat gtgaattcta tctccttctt
      361 atatcccacg cttatctgcc agcaca
//
LOCUS       KCLJ01001217             670 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 136056cal ultra-conserved element locus
            uce-6095, sequence.
ACCESSION   KCLJ01001217
VERSION     KCLJ01001217.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 670)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 670)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..670
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="136056cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>670
                     /note="ultra-conserved element locus uce-6095"
BASE COUNT          183 a          138 c          128 g          221 t
ORIGIN      
        1 tggtgtcatg ctgcatttga tacaaaaact gaatattcta ttagacaggt cctgtgaagt
       61 taaaaagagg accgggttga gttatctcac catgggaaaa aggcatgccc aatcagatat
      121 ttaacactcc tttgcaatta tgggaatttt tattctctcc ctggtaggga acatagcatt
      181 ttactgcagt gtttcaagtt tgcctccaat ggtatctgat agaagtgctt ttatcccctg
      241 aagatacagt acaaaataca aatcatcatt ggttttatct cagctggagc tgcctatttt
      301 ctaaatgagt ttactctgtg ctactgccca tcaggcacat ttttcatcct tcatccccgc
      361 tcttttacta tagctgggtt taagtccttt cttctgtcct ttgttccttc agctcagcga
      421 agtaaacagc aggattgatc ttacactgca ttttggtatt gttccaactg ctcatcaata
      481 gacatgggct gggaatgcac tgactggaaa agaagggcaa gattgaaatt cactttttgt
      541 tctttgtgcc ttttagtgtg cagcggaatg tccctaatct gaaagctgct acactgactg
      601 cttatcaaca tgcaaattaa tcatcaagtg acgagtccca tattcaaaag tctttaaagg
      661 tatctatgaa
//
LOCUS       KCLJ01001218             657 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 136166cal ultra-conserved element locus
            uce-2572, sequence.
ACCESSION   KCLJ01001218
VERSION     KCLJ01001218.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 657)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 657)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..657
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="136166cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>657
                     /note="ultra-conserved element locus uce-2572"
BASE COUNT          182 a          125 c          155 g          195 t
ORIGIN      
        1 tttattacag agcaattgga atgagattgt tgacaatttc gatgatatga atttaaaaga
       61 atcccttcta aggggcattt atgcttatgg ttttgagaag ccttcagcta ttcagcagag
      121 agctattatt ccatgcatca aaggtatgct taatatcaag cattgtgaaa ttacgttgtt
      181 taactaattt caatcttcat tgaacaagtg atatgatggt acaccatctt tcgggactga
      241 cctgaaatgg agagacctca gtactgatca cttaagggga attaagtaaa attgacccgt
      301 gtgggagcag taaatgtgta tcctactttt tttagggtat gatgtgattg ctcaagctca
      361 gtcaggtact ggcaagacag ccacatttgc tatttccatc ctgcagcagt tggagattga
      421 tctcaaggag tcccaggcac tagtattggc ccctaccaga gaactggctc aacaggtatt
      481 gatagtgtag ctttgtgtgt tgcataggtt tcaggtttca caactgtgag acaacattac
      541 cagatccatt cagaacccca aactgccttc tgtcccacaa gtcctccagg ggtgctggag
      601 gcagcctgtg ctgtgtgaag tggagggagt cttcagcaga gtgttctgag tggaaac
//
LOCUS       KCLJ01001219             493 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 136275cal ultra-conserved element locus
            uce-6179, sequence.
ACCESSION   KCLJ01001219
VERSION     KCLJ01001219.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 493)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 493)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..493
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="136275cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>493
                     /note="ultra-conserved element locus uce-6179"
BASE COUNT          110 a          117 c          124 g          142 t
ORIGIN      
        1 atttgcacaa ttataagcca gaaggataaa gctccccacg ggctagacaa gcacagggtt
       61 cactgtatct cacactgcac taggacaagc cagggggaaa accaaaggtg ggagccaggg
      121 agcaggcggg ctgcgtggga aggatctaag cgaccccttt gtagctcttc agtgttggtt
      181 ctatttatac gtttccttgc ttgtgatgcc ttgttttttg tacagtttta tgtacatgca
      241 ggtgtagctt ttctaaagga gaaatcctat ggcagagtcc cccactattt ttcagatggt
      301 gacgcctctt gctaaggttg tacctcaatg tgtgatgcat ttccctgtgc ggggaagcct
      361 ttttttcccc gggcgctgtg agcacccctt tctgttcgga gccgtgagca tgacaccgtc
      421 gtgatgccct cgtttgctga gctgtcaaga tgaccaattc cattgtaatt agcccttcct
      481 aaagctttac aat
//
LOCUS       KCLJ01001220             476 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 136380cal ultra-conserved element locus
            uce-4696, sequence.
ACCESSION   KCLJ01001220
VERSION     KCLJ01001220.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 476)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 476)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..476
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="136380cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>476
                     /note="ultra-conserved element locus uce-4696"
BASE COUNT          169 a           86 c          100 g          121 t
ORIGIN      
        1 gatcctaacc aaactggcaa gcataaattt ctgttagagt attccgtcaa gattatgcta
       61 aatgatgggc tatccagact taccttcaaa ctaacacact taactgctgc cttagcatca
      121 ggacacagat ggatgggaaa gatgaccctg acctccataa gacccacatt cctgtgcaag
      181 gatagaagca tgataatcag gaaatgatgg ttattagtta cagaaaatgc attattgtga
      241 aaaccaggag aaaagtgctt atgagaggaa gtgattggat tatgggggaa tgagagaata
      301 agactaggtc atttctccag agtaaattgc tgtgatttat aagagaaagg gggtagtgat
      361 atcacggctt catactgacc agattcattt cacaaacaaa cctaaatcag aatgcggcaa
      421 ccaaatcaaa cacagattaa ggacataata catgtcagat acctttcatt ttctgg
//
LOCUS       KCLJ01001221             737 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 136491cal ultra-conserved element locus
            uce-1741, sequence.
ACCESSION   KCLJ01001221
VERSION     KCLJ01001221.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 737)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 737)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..737
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="136491cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>737
                     /note="ultra-conserved element locus uce-1741"
BASE COUNT          198 a          148 c          188 g          203 t
ORIGIN      
        1 ttttatttca gcagatagcc cccaaaaaag gcagggatgt caaaggcttc gagtcccccc
       61 tttgacattc acgcagtgct gagagtcagc cggggtctca gctctgacaa atttgcatct
      121 ctttgaatgt gacgcttgaa aaaagccaga gctgctagat taaatttttt tttttccatc
      181 gagaaaatga gaaaagcctc tatctctccg ccgagtctac tgggaagatc tttattctga
      241 ttcttgttag aattgtttat caccctgaca gaccagactc ggacgagata aaggcgctgc
      301 tccatcacgg ggcctgacag tggtaggaca tgcagagaaa tgaaaggagc aggggaaaat
      361 attattaata gatgccgact tgatttgcct ctatggcacg tcaaggaagg aagggagggg
      421 ggagccacgg cttgattgca agcctatgaa gttctgtcca aaaaagaagc tatttttcat
      481 taagtgatag aagggctttt ttcatgttct ttcctgagga gctgataact tatgcagttt
      541 attctaaccc tgctgatttc tgtcagggaa agaaaactcc tgaaagatgg ctccagctcg
      601 tccttttcag agaaggaggc tgtcttgtca aaaatggtag caaggcatta aagcctcggc
      661 cttgactcct gcaaggtccc ttggatgtga ttggagtgtc tgtgagcatt ggggaaggag
      721 ggtgttattg tgtaccc
//
LOCUS       KCLJ01001222             657 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 136602cal ultra-conserved element locus
            uce-4557, sequence.
ACCESSION   KCLJ01001222
VERSION     KCLJ01001222.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 657)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 657)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..657
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="136602cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>657
                     /note="ultra-conserved element locus uce-4557"
BASE COUNT          233 a          125 c          111 g          188 t
ORIGIN      
        1 agactgtaca ataattagca ttgtcaatta ctaattatac catggccaca gatttatgaa
       61 aatgcagcaa agtaacagct ttgataattt caaagaatta caccttctgt cacatttgaa
      121 tatttctact tttatctatt cttataaaag cagaaaagca agaacaatag gtaacatttt
      181 caaagccaaa tttaaggaca cgctgttcag accccttgct gctcaaagaa catgttcccc
      241 tcattgttaa atataaacaa attaacttcc tatgcatgtt gcttctgaga gaattttttt
      301 agagtggttt tccatcacta caaacctttt cctttccctt atgcaccagc aaacatactg
      361 atacaattta aaggtcatgt tcttttcaaa ctgacagggc cctccaaaat tttgacgaga
      421 gtccctccaa gaatcacacc atacaaacgg aaaggaatta agtaaagcat cacttgatgt
      481 aggctcaatc atgtgaactg attagaaaat gtaaccatgg agagaggtga ttcaaagtgt
      541 gacggacaac ctttcaaaga aaggagatgt catgttgata ataataagca agtacctgac
      601 attgaaggag ggggtgaaca cagagggtca ataaagatat aattgccttc agctact
//
LOCUS       KCLJ01001223             764 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 136713cal ultra-conserved element locus
            uce-7628, sequence.
ACCESSION   KCLJ01001223
VERSION     KCLJ01001223.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 764)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 764)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..764
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="136713cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>764
                     /note="ultra-conserved element locus uce-7628"
BASE COUNT          244 a          154 c          152 g          214 t
ORIGIN      
        1 tgtaagggtt ggcttctggc aaaggtttat ataattgtac ataatgcaaa attcagtcac
       61 aacatcaaaa ggaaaattat ttttcctttc atgaggtctg ggattttact gtttgttcac
      121 tcatttttgg caagagcccg catatacaat cctgccataa accgaatcag gggatgctga
      181 aggaaatgaa ctgtgaaagc aggatagtat ctttttgcaa acaatccatt tgtcactttc
      241 atggacctgg gttaattaat attctataaa ggtcttccaa aagttgaata cctctcaagt
      301 tctgaattca tggggctgac cttagacttt ctcagaatga tttttaatgc agtctgttat
      361 cagcaaaacc cgtttaaaca catgccccat ctgccagtac cccatttgca aaagagcttc
      421 ttatacttgc agacagtaaa gcttctgcct gcttccctct ctcctctaaa taccagctgt
      481 atggtaatga gcacaaacag ctgaaaaata ctgcacagta acaaagctgg tacgaagcgg
      541 gcagaacaac gcatccactc aatgaggcag ttgtagcatg aatttagcag attagctatt
      601 gaacaagggt ggggggaggt ttggaaaggg tctacacaga tagcaagaaa atgaaaagag
      661 accaaaaggg caggctacca aagaaaagcc caaattctaa agtacttttg ttgaactgca
      721 tgaaccaatt cttcaaattt tctaaggctt actcgtcctg tact
//
LOCUS       KCLJ01001224             699 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 136822cal ultra-conserved element locus
            uce-5937, sequence.
ACCESSION   KCLJ01001224
VERSION     KCLJ01001224.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 699)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 699)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..699
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="136822cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>699
                     /note="ultra-conserved element locus uce-5937"
BASE COUNT          226 a          121 c          121 g          231 t
ORIGIN      
        1 taaaagctat caagcataaa accatgatgt tacaccagat accaattact gtggtttctt
       61 aatgtatttt ttttgtccca catttattaa atatttagat gttcaactgt agatattttt
      121 aatcaaaatc agaattttct cacaaaatgg gtgattacat catttgcaca tttatattgt
      181 aagacatttt aacgatataa gcattttttc atttagacag caaccataat aaattgaaat
      241 aaaatccaac cttgattgat gttctacgtg tcatgtacag ggcaagtccc atctataaaa
      301 tgtggtttgc caaggcagca atattagtag catttgaatg tttttcttat taaggagaaa
      361 aatggtcagc aacatcaata ccgtctgctc caaagaccat ggtaaatgga aactgcctgc
      421 agcacatttg aattcctcac tgtatttggg atgaaggtat gatgcaggca gtgagaatcc
      481 ttgaaaatta ggatagacta ttacagttct taggatgaaa gagagaggct gattacaaca
      541 taatggagtg taccatattc atctctttga aatatgccct cactcggcct tttccatttt
      601 acaatcgatt ctctcattcc cttaatgaac ctgtgcgttc atgagtcttc cttggaagta
      661 tgcacatgaa gtattacagt agcagagagt aattgtctg
//
LOCUS       KCLJ01001225             590 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 136932cal ultra-conserved element locus
            uce-2908, sequence.
ACCESSION   KCLJ01001225
VERSION     KCLJ01001225.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 590)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 590)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..590
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="136932cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>590
                     /note="ultra-conserved element locus uce-2908"
BASE COUNT          186 a           91 c          102 g          211 t
ORIGIN      
        1 tttaggacaa aggttgattt gataatcata attgcatttc tactgtatct attttcttaa
       61 gcgttagtag atttattaga cttttcctgt ataacctatg gctgatttgc agcttccttg
      121 gtaatttctt agtaggcagt agcaatttct tatatcttca gtaatgtctt gaatgtacat
      181 tttttatatt aatgatctca ccaggagaaa aagtgtactg tgaatgcatg atggccatat
      241 ggaaaagaca atgaagttta gtaattaaaa ctgaaaaggg aaagaactat gcagtaatta
      301 gaacactgat taatcagctg ataattttat cttgattaat gctgctgatt ttcctcttct
      361 tattgaccta ggaaaggtag gtttagacca attaaatata aattattccc ttttttcaca
      421 ttccaggcag cttccagtgt tctaagtcat actacactta agatgcagca ctgaattgct
      481 cttactaaat tgggcagctc aacaaaaggt aaaataaggt ttatgttcca aacatgctga
      541 tgcttttatc taaggcagaa tcggacagaa ttggttattt cactattatc
//
LOCUS       KCLJ01001226             472 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 137041cal ultra-conserved element locus
            uce-7457, sequence.
ACCESSION   KCLJ01001226
VERSION     KCLJ01001226.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 472)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 472)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..472
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="137041cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>472
                     /note="ultra-conserved element locus uce-7457"
BASE COUNT          135 a          101 c           85 g          151 t
ORIGIN      
        1 gtcttgcctc taatctgcaa taacggattt tcaatgttaa aaaagctaat aaaattgatt
       61 caggtaagat gcgcttaata aaatagtgac ataattacag tttgtacata ataatacatc
      121 tgtagtatta taaccttggc tatgagttat gaaatcagtg tataggccaa ttagccacat
      181 acgaactaag acactataaa cactggtttt aaatgtccta attagttact tgctcattaa
      241 ttaactttct gattaattgt gtagcaatct aatttgcaga tgaggcactt aaacagtgat
      301 accttgtaac tctttaaaat tcgtaattaa aatacaggtc cgcaggtttc gaccccttgc
      361 aaagtttggt ccccttgggt ggtgctgcgg cgctgttccc tcacccttca caaacgcggg
      421 gtggccccga gccctatccg ctcggtgtct catccttcgt ttttcgcccc tc
//
LOCUS       KCLJ01001227             549 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 137148cal ultra-conserved element locus
            uce-3922, sequence.
ACCESSION   KCLJ01001227
VERSION     KCLJ01001227.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 549)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 549)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..549
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="137148cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>549
                     /note="ultra-conserved element locus uce-3922"
BASE COUNT          174 a           87 c          106 g          182 t
ORIGIN      
        1 tttattgttg attcacttgt acttcttgaa atgtaagaag ttctgcctct aagattttca
       61 ttttggaatt tgagatcata aattaagccc tcttaaagaa aataagaagt ttgctgttgt
      121 ttttaataag attttacggt aagtatggca acagcaagtc tgtcagtccc agctttactg
      181 catgtgtgta gtttgagacc cttgaaatat ctggttttag gacatcagca gggggctaat
      241 gaaaaggctt tgttgatttt aacgaattgc aagccactgt agccaaaata aatataatct
      301 gctttttgga ttagttgtca cacatgattt tacctactaa cagtgattaa agaaccctgg
      361 tggaccagaa gcatagctac tctctggtga ctcttgctaa aatagcaata aacagaagta
      421 aataaagtgt tagggcatta gttatcttta ataaacactg acactgcata taatgaggct
      481 tcaaaaacat tgagtacagc agtgttactc tttctagcac agaaagcatt gatcatttta
      541 gatgtctgg
//
LOCUS       KCLJ01001228             694 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 137259cal ultra-conserved element locus
            uce-5879, sequence.
ACCESSION   KCLJ01001228
VERSION     KCLJ01001228.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 694)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 694)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..694
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="137259cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>694
                     /note="ultra-conserved element locus uce-5879"
BASE COUNT          218 a          152 c          134 g          190 t
ORIGIN      
        1 aaacatttct tgaccttaac tagactaaac tcatgagaac cacttgtact ggcagcctaa
       61 aaggagacaa gaacaggtga ccggtaaaat cagccctagc acccacaggc cgtgcactgg
      121 cttatggcat taaacataac agcaccactg ccacaaaagc aaaatggagc cattttatta
      181 ccaagaatct cgctgcagac aggaagggga gggctctggt tattgttgca gaccccctct
      241 ttctccaggt ctttaatccc agacttggct tgttgcgctt caaattgaaa tatcctgaac
      301 agatgtaaaa acacatgtga gccactgctc acaagctgtg caaagctttg tttcatctgc
      361 tgatgatgtg agcctaaagg agatcttttt aaaatttcat cactattcaa aaggataatt
      421 aatacgtacc cccaggcttt gattatgcta tacccagtgt gtactgctgg tacaaaaata
      481 atgaggctct catcaggccg aatgaatact tgcagcaaac attcagtttc cataagaaat
      541 ttaagattca gcggcggtac catgtaggtg gcttaatcta attttaattt gtaacacaat
      601 acaatagata agatcatttg tttgtaacca gcacaggcat tttgtttaca tgaaacccca
      661 gtcagcattc agcagatggt ctttttaaag gctt
//
LOCUS       KCLJ01001229             767 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 137371cal ultra-conserved element locus
            uce-3097, sequence.
ACCESSION   KCLJ01001229
VERSION     KCLJ01001229.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 767)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 767)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..767
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="137371cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>767
                     /note="ultra-conserved element locus uce-3097"
BASE COUNT          241 a          150 c          153 g          223 t
ORIGIN      
        1 taagacaggc ttttacacgc ttccaaactc ttctccctga aaattaaccc cgttgattct
       61 tcaaatgtta agggtctcgg gcaaaagtaa accaaaggct gaagtaaaat aaccatcccc
      121 ttggaacgaa aacttatatc caggagggat taatttcata ttatgtatgc catacacata
      181 tatatgaaat taaaatagag acacacatga cttgggcatc agaaggggac tgctactttc
      241 atacattcat aaatagctgc tgaactctct actcatgaag aagctcttgt aggcagtttg
      301 gggatttgaa aatctcaggg acctcactgt ccagcttaca gatgaccttg tatatggcct
      361 tcttccagga aggatcaaca tctttgcctg cgataatggc attgaaaaac tcccgtaacg
      421 tgatctgagc cacttccagg aatctctctg gaacctgctg atacaaggag acaatggcat
      481 taatacagtt ttcaatttca agtctctggt tcttcaaagg aaactgagct aagttctttc
      541 tttcagaaag gggcttacat agcacctgca ttttctaaat gtggcagccc tctattctct
      601 tatgcaaagc tgttatatat agtactatag caataacttt tataacatgt gttagagatc
      661 tttgtaaagt ctactgacag aatgtaggta acaaaatgtt actgtctgag ttgggagagt
      721 aggggtagga tataattagc aggaggggaa acaagcacaa ttgtctt
//
LOCUS       KCLJ01001230             693 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 137482cal ultra-conserved element locus
            uce-34, sequence.
ACCESSION   KCLJ01001230
VERSION     KCLJ01001230.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 693)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 693)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..693
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="137482cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>693
                     /note="ultra-conserved element locus uce-34"
BASE COUNT          213 a          124 c          142 g          214 t
ORIGIN      
        1 aacatgcctg agaaagctga ataacataaa attcaactgg cagtaccttg aataatccaa
       61 cagttaagat ggagacaata ggaatacttg atggaccaga cagggaacag aaaggatttt
      121 agcatggttt tctttaacag caggccataa tagacccttg catttattca gtgctgagag
      181 aattactagt ttgataacga ctaggaatgt tgttattaaa acagtatgtg cagttcattt
      241 tcaacagttt tgaattagag tctgcactaa tgaaacggat acggtttctt tcacaaaggg
      301 cagatctgtt agttaatata gctgcagcag tgccttgtgg accatgcctt tagctctatt
      361 tgtatttcac agcatgataa gcaaagagtg ttgattttca aggatcctgc tgatgaaagg
      421 taatggcatt attacatctt tatctcaaaa acagaactgc atggtaaatg attatttttt
      481 ctccccaatt gctgttgcac aaaggatttc ttgcttagaa tccttatttc tttgaatgat
      541 tttagccttg gaaatgatat gttattattt aatgtctgca cagcaagcct gagagcacct
      601 aatagcgaat ggattggaag tgaagtgcct cctgctcaca gatatggatc ggctcagtca
      661 cacgctgtac cagctgtcat ctcagccata ctg
//
LOCUS       KCLJ01001231             583 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 137590cal ultra-conserved element locus
            uce-6850, sequence.
ACCESSION   KCLJ01001231
VERSION     KCLJ01001231.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 583)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 583)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..583
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="137590cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>583
                     /note="ultra-conserved element locus uce-6850"
BASE COUNT          153 a          124 c           81 g          225 t
ORIGIN      
        1 cagccccttt gtcagccatt ttgcctttgt ctttgtcaac ttggggatgc taattcgatt
       61 ttccattgag aggtgcggat atctatatta ttttcctaaa actccagaga atattataaa
      121 tttcttttta ttgcttccag ccatgttatt taaagtaatt aaccttaatt tataaatttt
      181 tatatcaaac tgccttttaa cttttagaac tggcaggaga agtccatttc ccagggctcc
      241 taatagttct ccatttaatc aaaattcatc catcagattc cagtgttaaa tcatctttta
      301 attgggagtt acattctggt taatagtttt ataattcgcc gcctctaata gtttttacca
      361 cagggatcta ctccattttt tctcactcta ttattcctgg tgttcagcag ggacatttta
      421 aaaacgttca cttcccctgc ctgttctttg tgatctcatt aattcttgat agcaagttcc
      481 ctttctcctc attactggag cataactacc tttatcacta ggtgaaacct tgcttgtttc
      541 tacaagtgct gtccaaaaca atctgcaatt tatttcagaa aac
//
LOCUS       KCLJ01001232             861 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 137699cal ultra-conserved element locus
            uce-1172, sequence.
ACCESSION   KCLJ01001232
VERSION     KCLJ01001232.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 861)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 861)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..861
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="137699cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>861
                     /note="ultra-conserved element locus uce-1172"
BASE COUNT          301 a          156 c          161 g          243 t
ORIGIN      
        1 atcatgctaa tctttaatag aagggtttag aaaacttctg tggctgcctg taattttccc
       61 attgatacat attttccata tagaaaactg actctggaaa tccagctccc tttaaagcac
      121 tcctaaggat attaacagat aaagaaaaga gatttcacag caaaacccac ataaaaacca
      181 atattaggaa tgataccaaa cttaaagaat gttgtaaaat gagcatggaa aaatgtacaa
      241 aatgaattca tgcccattta catgctttca gtcaggctac cagataacaa agcctctgtc
      301 tttgtgttaa cactgcagat taggtcaagt ttttacccct ctgagctctt ttcctgtaaa
      361 tgacgggttt tgatgtgaaa caagcaacat gtcaaagcaa gttgaaagat gtaggcattt
      421 tatgccatgt cacaatgaca ggccggtgaa tatttgggcc attaggggct tattagtgaa
      481 taaatgacca gatggttcag tgatgcacag agatggacag aactggatgc tactaatcag
      541 cactgtctgt acttgatgtc aaatcacatg acacagtaac ccatggatac cgaataaaag
      601 ttaccattag caagtcaatt tgatttctgt gtggtgtaaa cagacttata actgcacttc
      661 agagctgcct gttgttaaga agaaataatg gtagggtatt taaataaaca cactctatct
      721 tatcaagtta tgataaatat aaatagaatt tcaattccca ggacctcgtt ttgaagaaac
      781 atttacatat tagcctatct ccacagacaa aaaggctggg ctggaatgct gtaaaagaga
      841 agcaagaggc acattcttca a
//
LOCUS       KCLJ01001233             744 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 137812cal ultra-conserved element locus
            uce-6367, sequence.
ACCESSION   KCLJ01001233
VERSION     KCLJ01001233.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 744)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 744)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..744
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="137812cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>744
                     /note="ultra-conserved element locus uce-6367"
BASE COUNT          236 a          136 c          145 g          227 t
ORIGIN      
        1 acagaactgg ggttagaagg gcagaatggg actgcttgtt ttattcagct gaaccacgca
       61 aattggcttc caactgaact gttgctgtta gctgaataac tggataatct ttgctgttta
      121 gagataaata ataatacatg ttactgaatt ccactgacaa ataaataatt tatatataaa
      181 caccttgaga agtaaagctc ccttcagtcg ataacaggac agttttgtaa accacttaaa
      241 gctgtgataa aatcctactt gactggtcca cgagcagatg tgacaagttg aatttatttc
      301 ctctcttacc aggaagcttt gcaggaaact cttaacatat ggtgcttttc acttccatct
      361 agagctataa atgttattgg aaaaggatgt tcccaggagc agcaagtttc tgacgtttct
      421 gccaaatgga ctccaaatga tccttctgtg gttcagaatt ccccaagttc ttaggagctg
      481 gcagccaaga atctctgatc taaacacaac tcactaattt aattatttta ttatagatct
      541 gtggaaagct cttgcagacc agtgattttg catctgtatt ggatctagct agacaggaag
      601 tgcaagttag aagagtataa atattttgtt tcttaactgc tttttgcttg aaaacttgga
      661 aaccatttca cacacaaatc agtcacgcaa gtgtgaatgc agaggaatgg gaaataggca
      721 taaaagtaac atcagcttgt actt
//
LOCUS       KCLJ01001234             715 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 137924cal ultra-conserved element locus
            uce-1794, sequence.
ACCESSION   KCLJ01001234
VERSION     KCLJ01001234.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 715)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 715)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..715
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="137924cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>715
                     /note="ultra-conserved element locus uce-1794"
BASE COUNT          221 a          135 c          150 g          209 t
ORIGIN      
        1 ataaagcaaa cggatattgg aaagagttgg ccatctgcct ttattttctt ttacttttgt
       61 taaggaaaga aaaaaaataa accccaccac agcctctgaa aggagaaaga gcacagccat
      121 gaaactgata gtgacaaaaa acaccctttt ttatcaggtc aaaatctcat ctaaatgcag
      181 ttctgatgaa tggtaaaaag cttgctttgt ggatttggag tgggtctcaa gaccagcaat
      241 gaagtctaat gattatttaa tggtgccgca cttgaagcag gattatgtga gactctcttc
      301 cccgttaaga gtttgatgaa taggttttgt gacagccatt taggaataaa caagaattca
      361 tcagtctgca taagaagaag ccagtttata gattaagttt cttgaggtaa ttcatgaggt
      421 cagtcccatt tagatgtaga ctattagggc tcagcttttg agagcggcca tacaagggag
      481 ttactccaaa tggacctctc taatacaaag ccccctttca gagggaagcc tgaaattttt
      541 atgaccctgc tgctaggaag cacatcaact tgtcactgtg aagatctgct ggggcaagac
      601 ctcatcactc tattaaagag ctctgtgacc ctattgattt gaagtattta aagcaggggt
      661 gaagttcaaa gcaatttctt ttctatacta ttactcagcc tctctgtgtc ttggc
//
LOCUS       KCLJ01001235             667 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 138036cal ultra-conserved element locus
            uce-7390, sequence.
ACCESSION   KCLJ01001235
VERSION     KCLJ01001235.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 667)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 667)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..667
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="138036cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>667
                     /note="ultra-conserved element locus uce-7390"
BASE COUNT          218 a          126 c          115 g          208 t
ORIGIN      
        1 gctcccactc acattcatat ctgaaggaaa acatctacta gaaggccgct gttttatagt
       61 tgccactctg gagtccacag ttgcattgtc tgcaattctt gatggcttgg aaactggcac
      121 tatttcatcc accttatctg taatataaaa gcattcagta aaataaatat cacttgttca
      181 aagaactgga aaagttaagt attgcaaggt caaaggaaga gatttacttt tcaaaaaaat
      241 gcaaagaaaa atttttttgg cattttaaca aggcaacgct tgagcatcat aagtcgtgca
      301 agccgagcac tttttattgc tgctacataa catgcatgct ttagttttaa gcctgcatgc
      361 atttaatgtt tacttagtgt gactcgaaaa acaatcctct tcttcaaacc ttcaaaatgt
      421 gaagggagaa tatctatata gaaatggaaa gaagaccttt agaaatagcg aatccgtaga
      481 gcactgtttc aaatagagat aagcagactg tacttagtca tcagaatttc actgatattt
      541 tggacaataa caagtactcc agaagtgctc tttcatgcct atgctcctaa taataacatc
      601 ctgatttgtc acactcttgg acttgtaggc tagcctgcat cctttgttta aatgaaactt
      661 ttatatg
//
LOCUS       KCLJ01001236             723 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 138148cal ultra-conserved element locus
            uce-4202, sequence.
ACCESSION   KCLJ01001236
VERSION     KCLJ01001236.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 723)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 723)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..723
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="138148cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>723
                     /note="ultra-conserved element locus uce-4202"
BASE COUNT          195 a          138 c          144 g          246 t
ORIGIN      
        1 tatctgaaaa ccttttaaag cagagattaa attgtttagc tcaatattta atctgttact
       61 tcctctttaa agatgcccag tggaatttgt catacactga gctgataaca cgtaatattg
      121 atcagtcata aacataaaac agagaaatct caggaagtct tctgcaatcc ttttcttttt
      181 aattaaattt tgatctgaac tgcttttgat taattttctt atttgtaagt atgtgaattc
      241 tgggggccag caagtttctt aagttgcctg gcattggtct ctggtgagtg gcttagctca
      301 ggaacagtat gattgcattt ttatggtttt cagatattta atagcttctt cctgtcattt
      361 tctgaatgag tgaataaggt ttagccctct gggagccagc acagcatcag agagtggaga
      421 aaatgagtcg aatctgtgta cttgactgat tgccttagtc ttaattgttc tcttaattag
      481 ctgcagtagc aactgcatct ggggagagat cacggtattg gtaaacagct ccaccttgga
      541 gccctgtgta atgccttttg gaaacatgac aatgagctct gcatctccgc tacacaaacc
      601 tgccaaatct tctgcccctg aagtcttgtg tgatctgtca ctttcgtctg tgagatgcag
      661 gcccccaact gtttgttctt aaacaaatta agctttaata tgccaaaagc cagctttatt
      721 gag
//
LOCUS       KCLJ01001237             661 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 138259cal ultra-conserved element locus
            uce-3161, sequence.
ACCESSION   KCLJ01001237
VERSION     KCLJ01001237.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 661)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 661)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..661
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="138259cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>661
                     /note="ultra-conserved element locus uce-3161"
BASE COUNT          229 a          105 c          113 g          214 t
ORIGIN      
        1 tatttcataa attaaacatt atctgaataa atacatgtca gtacagaagc atttgtgtct
       61 catatctttt ccttgattta aatgggttca tccaatatca gctaggtagt gaactttgaa
      121 gcagagtcca ctgtaataat agtaaagttt aatgatgcat agctttgtga gactgacaaa
      181 ttcccagcca aagtattgat tcctggagaa tttatgaagc acaggctcta ttctatgtca
      241 ttacggtcca tttttggctg aaagaatcat gtaaaataga tttttaaatg agtggtaata
      301 gccagacata aagaaggtat tgatgtgtgt catgaagggt gaaatagcat gccaggtaaa
      361 ggcatataac aaattgcaaa caacagtgct gaaactcctg caaatgtaaa tttgttttta
      421 gttttaatca aacctttgtt tcagtaagta caaattttgc catggaactg caccctttta
      481 aaaaacataa ttatttacag ttcgatttca tgcttcacat tggaatgtgt ctataaaacg
      541 catatctcgc ttacagacct gttaatcaat atgaattgtg tactacatta caacaaaact
      601 acatctgaga ttattaggga aaaaatcaaa tgcacacagt tctgcttact tgagcaatat
      661 g
//
LOCUS       KCLJ01001238             606 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 138365cal ultra-conserved element locus
            uce-823, sequence.
ACCESSION   KCLJ01001238
VERSION     KCLJ01001238.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 606)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 606)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..606
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="138365cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>606
                     /note="ultra-conserved element locus uce-823"
BASE COUNT          176 a          113 c          124 g          193 t
ORIGIN      
        1 ttacatgcct gattattttc atcctttgga attcagatga ttcctagtgt tggccacgtg
       61 agagcaagct tagtgctata ttttaaggaa gggtgctcaa taatgtaaaa taatgttatt
      121 ctaagggaga ggaagatggg agaaggtgat tgttcaatga tttaaacaag tgccctgtgc
      181 ttattttgga aaaagacagg gcctccctgc acccatttct actccaattt aatgaagttg
      241 ttaaagtagc aagactgaca ggttaattat cctttataaa agggggacaa attgaactgt
      301 gtctttccat cattttttga tatatcaaga agctcctgag gtgctcaggt gccactctgg
      361 tgaatagaac aactaatcca ctctgctatt ctttgctgac cctggtcccc ccatcggggc
      421 cttgcagtat attgcagttg ctttttgttt cacattcaac agattccact ttattataaa
      481 ttcagaagga tttttttcct ccatatgttg gctgacagct cccctgaaat aactgatggc
      541 taaatttaaa ctctgatgaa aattaacccg agtgttaaat gcaaacagga gctgcttgga
      601 aagaaa
//
LOCUS       KCLJ01001239             574 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 138474cal ultra-conserved element locus
            uce-5140, sequence.
ACCESSION   KCLJ01001239
VERSION     KCLJ01001239.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 574)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 574)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..574
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="138474cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>574
                     /note="ultra-conserved element locus uce-5140"
BASE COUNT          169 a          106 c          127 g          172 t
ORIGIN      
        1 gtgtctgtgc ttccaggtgg gtgacactgc ccacaccact gtgtccatgc atccctctgc
       61 ctgcaatgct gttttgcagc agcaggatta gagttatggc agcaaggata ttgttggagt
      121 aacttggcaa tgctctaggt gttctgacac tggttctttg ctcaagggca agggggattc
      181 tggatacaaa ccagtgagag aaataatgtc agaagggttc agaagatgaa agcaatgaca
      241 gtaaataagt ctgaaattat tttaggttta catactttaa gtcctcagtg actgaaaaca
      301 cagccaagaa ttgcttcagc aatattcctt cataaatctg cataataatc tctcagaggg
      361 gctttggtga aattacaagt attcatttac taaattgggt tcagtgtctg tatcatacgc
      421 tgtatgaata ttcagtgcca tgaattcatc caaactatat cgaagttagt gtgttctctc
      481 tcaaatagac agtaagcatg ggcagaaagg gctttccttg aaatattcca ctataagtta
      541 tattcccgag aatggcaatg tgaaatttct gatc
//
LOCUS       KCLJ01001240             522 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 138586cal ultra-conserved element locus
            uce-5051, sequence.
ACCESSION   KCLJ01001240
VERSION     KCLJ01001240.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 522)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 522)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..522
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="138586cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>522
                     /note="ultra-conserved element locus uce-5051"
BASE COUNT          156 a           90 c           86 g          190 t
ORIGIN      
        1 gaccagtcct ctgtcattct caagataaga agattgggac ataattaatt atttttaata
       61 gtttttggct atgttgcacc agcacccaaa gttaaatctg aaaatgtggc taggtgtttc
      121 tccaaaagat tagctttaaa ggtgtcccat gcatgccata cttttgttct ttaaaatttt
      181 ccattaagat gcaaatgcaa tacctttttg cctggaggaa ctaggttttg atttgctttg
      241 acaaggtggg aaagtgcttt ctttatgttc ttttctttca tgctttgcag cacagcagat
      301 ggaagaaaag tctctaatcc ccattctttt ctgcaataaa agtatttaat ttcacattcc
      361 tgtgatgatt atttatctaa agactggtga ctacgatgcc aagtgaatga ttacctgaaa
      421 acagaaggag agttgatcaa gtccagaatt ttgcaatatt tcttaaattt aaacatttta
      481 ttttttttaa aatgataaat aatctctctt ctaccccttc ca
//
LOCUS       KCLJ01001241             514 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 138696cal ultra-conserved element locus
            uce-2541, sequence.
ACCESSION   KCLJ01001241
VERSION     KCLJ01001241.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 514)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 514)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..514
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="138696cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>514
                     /note="ultra-conserved element locus uce-2541"
BASE COUNT           94 a          130 c          139 g          151 t
ORIGIN      
        1 gatgaccagc agcctccaga gaatgtgagt gtctctctca aatcatttgc cacctccctc
       61 ttctttggtt ttctggacaa tctgaccgga gctggcagtg ctggggtgag cgctgagtgg
      121 tgtaggtgct gtgtgaggtg tgctgcgcac gaggcttttt ctctctgtcc ttctctgagc
      181 cgtttctctt tccccttttc tttcgcctcc tgtagattca gaacattctg aaggtgctgg
      241 tgtcagacct taaccgctcc aatggggtag ccataccctc attggacaag aggaaggtga
      301 ggcagtgctc gtgtccctcg cactcgctct ccctcctgca tgcttcgggt tctgctcact
      361 ctgagctctc cgggatggag ccttgttgtc agttgcttca gtttcatgga gctcaccgtc
      421 cttctggttt gtgtcaactc aagaagttct tgagacagct gagcttggag gaaaacagga
      481 atttggggtg aggcaatata acagctgagg aaaa
//
LOCUS       KCLJ01001242             640 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 138803cal ultra-conserved element locus
            uce-1751, sequence.
ACCESSION   KCLJ01001242
VERSION     KCLJ01001242.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 640)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 640)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..640
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="138803cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>640
                     /note="ultra-conserved element locus uce-1751"
BASE COUNT          215 a          109 c          105 g          211 t
ORIGIN      
        1 ctttgtgcta gtttgacaag aactaatgtg gatacttaaa tattttaaag gctgcacatt
       61 tcagaatgat aaaatactca actgatcttc ctttcctgtt gaatttgtgg ctaatgataa
      121 aataattttt tctataagag atttttaaca acaaacatta aaagttctct tgagatcttc
      181 atatagggcc atgcaatgac actttttaac tacagttgtt ttttattcag ccataaaatc
      241 tatctttcat atagaaaccc acttacatgt cttacttcag tgaaggttat ttgtagactg
      301 aaggtctttt cttgtcaaga tatgatgaat accatgtgtg aagacagaag agcatcagga
      361 cctgtattag ccggaaaacc cactgatctg tgaataacct aaaaaagaaa acctgaagat
      421 tagcaacgtc gcttttagaa tgatccatca aattcaacaa gcagattcac agagatgaat
      481 catctagttc cttttattcc aacaatacag taaaggttat ttcccttcct tacaaacaga
      541 agttctgaaa tacaagaaat agagacttgt gagtcctttt tcagtcataa ggcaatgaat
      601 ctattctgtg tggtttttaa acaattgacg taggtgtggc
//
LOCUS       KCLJ01001243             709 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 138914cal ultra-conserved element locus
            uce-2521, sequence.
ACCESSION   KCLJ01001243
VERSION     KCLJ01001243.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 709)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 709)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..709
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="138914cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>709
                     /note="ultra-conserved element locus uce-2521"
BASE COUNT          239 a          115 c          106 g          249 t
ORIGIN      
        1 acagatgaaa taaataatat taaaggcatt tgctttattt catattgatt tctgactgta
       61 tcaatgtcct ctctattgtc acacttgtct atctggttcc atgtaaactg actatattgt
      121 atgaaagtta atataaaatc ttctcttgga tgataacaaa cacagtaatt tgcatttaaa
      181 tgacaatgca agcagtcatg aatacaacaa aacaacatta tttgcattta aatatagatt
      241 tataaatgac aggtatgctc tattgttcag taggaatttg ttattcttta catgttgttc
      301 ttttttcagt aatgtatttt tatggtaatt tttgtaacaa agtcattaaa ttgtgcaatt
      361 cttaccagat acagccagta gagtgttagc atcaactgga atggcccatt gtgctattcc
      421 tagaacaaac agttctctcc aagcatcttc caaaagcatc agctgtcata caatagatgt
      481 acaatataac atagtgtata atttatagat ttataaacaa tttaaatatg taaatttctg
      541 ttattttaaa aactacttta aatgcctgtc atggtatttc ccccacagca tcttctctta
      601 gccttttgag aaggtgtcta gaaaaaagtc tatgcattgt ggactgtgtg gaccaaaagg
      661 gaaggaaaga attctttttc cagagcattt gcacacaaca tgaacacac
//
LOCUS       KCLJ01001244             400 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 139024cal ultra-conserved element locus
            uce-1798, sequence.
ACCESSION   KCLJ01001244
VERSION     KCLJ01001244.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 400)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 400)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..400
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="139024cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>400
                     /note="ultra-conserved element locus uce-1798"
BASE COUNT          138 a           66 c           98 g           98 t
ORIGIN      
        1 aaaatgcaat gaatcggaat gcctcacaga tcatagcgga atcagacttt ccagcaagga
       61 aaatcttttc atggtgaatt aagtggtgga ggaagaaaaa tggtgatgaa aaaaggtagg
      121 cacagatcac aaacactggg ctcagggctc gctgctgaag atttaagaac cttagctaaa
      181 gctatgcaga atagaatgtg gaaaattgaa tttactaaac aattaagcat tgaattaatc
      241 tacatcccgc acagtagaaa agtgggggag ggagctgaac agagctgaat aaatcagggg
      301 agctcattaa aagatagtga atatatcagg tctgttgttg cataaaggag ggccgtttcc
      361 tggtataatt cttcagtccg gagcctcttc ttttctgcac
//
LOCUS       KCLJ01001245             367 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 139127cal ultra-conserved element locus
            uce-2439, sequence.
ACCESSION   KCLJ01001245
VERSION     KCLJ01001245.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 367)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 367)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..367
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="139127cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>367
                     /note="ultra-conserved element locus uce-2439"
BASE COUNT          125 a           78 c           57 g          107 t
ORIGIN      
        1 cccatggagc ttctgttcca ccagagatcc agcaatgaaa ttgtactgca aatggaggaa
       61 ttatctcccc tctagttcaa ggtttaaagc ttcaatcaca ctataaaagc accaagtgat
      121 cacaaaacac caaaaaatac tgggttttga agcaataaaa ctttagagtg cagttgccct
      181 cccttaaatt tattcatgaa cctacattaa gatgtatggt tctttttaca cagcatttat
      241 agcttaattc aaatgaatgt ttctggctaa gcacaagtgc ctctacacac tcaagtataa
      301 atcaaaactt caaatctatt agcagatggt ttctcaatag actctctgac ttggctacag
      361 tagagaa
//
LOCUS       KCLJ01001246             377 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 139234cal ultra-conserved element locus
            uce-4733, sequence.
ACCESSION   KCLJ01001246
VERSION     KCLJ01001246.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 377)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 377)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..377
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="139234cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>377
                     /note="ultra-conserved element locus uce-4733"
BASE COUNT          112 a           73 c           58 g          134 t
ORIGIN      
        1 gtcaagcact acaaattctc catgcttgcc catcaagcat aagtaccatt ttagtaagct
       61 gcattttagt gaaatgtgac tgctactgtg tactatttta aaaatggctt gacagaattg
      121 ctaatgttct cattccttca ggatattttc taatacttgt agtcttttca tgtttctaat
      181 taggccagta atggtccctg aagttaaacc aattaaaatt atttactgtg acacatagtg
      241 tggagataat tatctgatat ctgaatccaa cttctgctta cttcgcaaca ttacttaata
      301 gaaaacaggg aacctgatgc ccatgctttc attttacttg tctaccaaat gtgtttgcct
      361 tatagcaaac tgttcaa
//
LOCUS       KCLJ01001247             637 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 139337cal ultra-conserved element locus
            uce-7657, sequence.
ACCESSION   KCLJ01001247
VERSION     KCLJ01001247.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 637)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 637)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..637
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="139337cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>637
                     /note="ultra-conserved element locus uce-7657"
BASE COUNT          192 a          146 c          122 g          177 t
ORIGIN      
        1 aattacagcc cttaatgaga ctcagagcct ctcaagttca taatttttca tttgtctata
       61 cactttgctg agatgaggca cctgcctcta caggagttat gcttccttcc cttccacccc
      121 ctcttacaca taccactgca aatctgaagg aatatttcaa tcaccacttt gataaagaag
      181 atcattttgg catataggtg atctcctaac agattaagga tatttacttt cttcctgatg
      241 gatcattccc agagatcagc acaacacaac ctacgcaatt agttttcaca ggtggctgtt
      301 ttgcctccag taaaactgct ttctttctcc tcctgcaagt catagcagag caaatgtata
      361 taaaaacatt tcagatatga aataaacact ttcataaaag cagctgtgat gcaatgcatc
      421 atttctgtct gacctgagct acggaatgaa cttttgttgc cagaatcaaa gatggtaagg
      481 agagagtgga ggacagaggc caggggggga agatcagggc tcagaatagc acagtgtaaa
      541 atgacctcaa acactcaaag ggtaaatgcc tgtttggtgc aagcacacac tctctatgta
      601 ctctgctgca caatctgtgc aaacaggctc atgctgc
//
LOCUS       KCLJ01001248             735 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 139449cal ultra-conserved element locus
            uce-166, sequence.
ACCESSION   KCLJ01001248
VERSION     KCLJ01001248.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 735)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 735)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..735
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="139449cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>735
                     /note="ultra-conserved element locus uce-166"
BASE COUNT          228 a          117 c          148 g          242 t
ORIGIN      
        1 aaatagaaac gtgggtttag ctgcctgtct tgcagtagtg tgtagtgtct tttgtttctg
       61 gtctctagtt atgttggtac cctattgaca tagaaggtaa ctagattgtt ctattactga
      121 tttctgacaa acagaaattg tttgatatgc taaagctctt tctgacagaa gatagaaagt
      181 tttgacaaac atgcatggca cagcaagtgt ccaattctaa agagcaaaat aaatgcaaac
      241 caccattatg gggaacacaa acagcctgaa agcaagttat cagtaagcaa ataattgttg
      301 aactgttatg aatggaatag gatgttgaaa tagggcatga ttggctgatg ttacatatgt
      361 ccttgattac cttccttgtg cttttatcct aataagtgac attctttgta ttcccttgga
      421 tggctagaca gtctgacact gaagaagaat aaatattgca tgtggtacac attaagctgt
      481 catctaggac agcatttata aaaagtaact agaaaaattc ataagaaatt ctgcagtgct
      541 acagtttcct ggctccagtc ataattgtca aagttcttga cacattcagg tcttctgaag
      601 tgatttgggt ttacagctac ttggtgtatg aataattatc aaggattcat tttttctgat
      661 aatgcagact gttaatgttc tcgaaatgat gcattttcat tgaagaccat ggactgatat
      721 gtagccagat ctctt
//
LOCUS       KCLJ01001249             527 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 139560cal ultra-conserved element locus
            uce-4564, sequence.
ACCESSION   KCLJ01001249
VERSION     KCLJ01001249.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 527)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 527)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..527
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="139560cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>527
                     /note="ultra-conserved element locus uce-4564"
BASE COUNT          176 a           71 c           92 g          188 t
ORIGIN      
        1 taattagggt ggtaatatgt ttgaccatta tttttttagt atgacttttt tctgttacta
       61 ttataacaga aatgatcctt tcaaagacaa ctaaagtgct aatgatagct aagaaggtca
      121 ttcctaggag gttaaactgg tttaattaga atttatgaga aggttactat aggagtgcag
      181 aaagatgtta aggggttaac ctataagaga ttacattgta gtcagtgttc tgttaaagtt
      241 tgaattaatt tttcccatgg gtttttcaca ttctaatttt caactaaatg agacatctgt
      301 ttcagaaaag gaaaatttgc tatggttgtc atagcaacta tcattctgta agaaaattat
      361 tccaatggtt actttagaac agaaagatag aaattcagta cataaagcaa catccgattt
      421 ctagcactga taattcagcc ctttttgtgt ggcagattat ttggcctgca aaacttgttc
      481 aaatgtttta aacataagct gtaaacaaat tcacctctga tatattt
//
LOCUS       KCLJ01001250             718 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 139667cal ultra-conserved element locus
            uce-370, sequence.
ACCESSION   KCLJ01001250
VERSION     KCLJ01001250.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 718)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 718)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..718
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="139667cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>718
                     /note="ultra-conserved element locus uce-370"
BASE COUNT          243 a          144 c          136 g          195 t
ORIGIN      
        1 agggcctcaa gcaaggctaa agttaggaaa caaggatcgg gctctcatgg cagaactagg
       61 gattactctt ggttcattta aacttaatta acctgcaatt atgattaact caggggaaag
      121 tctttctaaa ttaaatacaa aaaatatatt atttcctaag tctgtccaaa gttcttatta
      181 tgttaatatt aatattcata aagaagcact aagtggcctg aaacatctct aaccttgaca
      241 gtttttttca ggggtaataa taatccgcag caaatgcagg ccaaccaaaa accacttaac
      301 taattagtag ttgcagtcac cgagaaaaca tgaatcaaca ctgttattac aagtggcaca
      361 tttgagtggc atctaattat gacttgatga gcacgatact tgcattatca acattactac
      421 tgcatcccat cagggactaa aagccgctga tggcattgac tgcgagaaac tccccctcaa
      481 tggtaccgca gcacccaaca atctccttgg caggggcacc ctcactaaat gacatgttaa
      541 gcataattac tggtagacat tgtaaataaa caggattgga agtgaaaatt gtaccaagtg
      601 cataagacac aatctgacac attggaagtg gcagccttaa ttgagagttt ctttgactgc
      661 tcaagatcat ttcaactgca tttctcggag gacagtgatt ataactgtgg agacagac
//
LOCUS       KCLJ01001251             400 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 139777cal ultra-conserved element locus
            uce-4119, sequence.
ACCESSION   KCLJ01001251
VERSION     KCLJ01001251.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 400)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 400)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..400
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="139777cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>400
                     /note="ultra-conserved element locus uce-4119"
BASE COUNT          107 a           73 c           99 g          121 t
ORIGIN      
        1 ctggtgattt ctcaactcaa aggacgggaa aagaactgtt ctcctgtttt ctacctgcgg
       61 gccttaagaa gttttagaaa acaaaagtgt cagagtcact gaagcagagt gccctgctcc
      121 tggaaatgga gtgatttaca tttagcatct gttttgggct gagagtggga attggctttg
      181 taatttcttc tgtcatgcca ctgtcagaaa attaagctgt ttacgccaga ctatggaagg
      241 ttaatggctg ttccagcaaa ggtcaagtgg tcattttaaa ggaaggctat gctgaataat
      301 cgaaaatggc agaaggataa ggcataaaat cttagctgac tgctcatcct gccctgtctt
      361 tgctctgccc agaatgtgaa ttgcttcttg tgatggtgtt
//
LOCUS       KCLJ01001252             749 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 139884cal ultra-conserved element locus
            uce-5679, sequence.
ACCESSION   KCLJ01001252
VERSION     KCLJ01001252.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 749)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 749)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..749
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="139884cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>749
                     /note="ultra-conserved element locus uce-5679"
BASE COUNT          259 a          157 c          121 g          212 t
ORIGIN      
        1 cctgccatca acactgccat catttggtgg catctgtctc tgcacttata tctgcattac
       61 aaaccagcca ttccactctt ctgtgctatg gctgactgca aagtctccta cacagtagga
      121 aatattaagc acatacctca atgacttgaa ttgcattgaa agtaacaagg cgaatattat
      181 gtagtgttta ttgcatttta aactctttaa agatatctaa ttctgggcag cactgcatcc
      241 ctacacacag ttgaaagaaa attccattct gttaacatca gatttttttc actagcttca
      301 aaatcaaaac acaaaagtaa gcttaaagat tacaggcaac agcattcaaa catggatgtg
      361 ggtagagaaa ggagtacctg gcatgagtac ctgcttagtt tgactgaatc cttgattttt
      421 aatttggctt ttcatgggcc gctcacaaca ccaacgctgt gtgaggtatg gtagtcagct
      481 gcaataattc ataaacccta cacttccatc aatccaatgc tactggctct cgagttacag
      541 aacaaactgc attagaatgc aaggcaataa agcactagaa acatccttga caaagaaata
      601 ctagcagttt atatgaaagt agtccaacat gtgcctcaaa tattaagcaa aattttctgc
      661 tgatgtacca acacaatatg gacttaaata caaaaccagt tcaaaacaaa atccctaaaa
      721 ataaaaaagg ataattaatt tttctatgg
//
LOCUS       KCLJ01001253             574 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 139996cal ultra-conserved element locus
            uce-4616, sequence.
ACCESSION   KCLJ01001253
VERSION     KCLJ01001253.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 574)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 574)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..574
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="139996cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>574
                     /note="ultra-conserved element locus uce-4616"
BASE COUNT          192 a          104 c          108 g          170 t
ORIGIN      
        1 atccttcatt tccaaggact tccgtgtctt atctttccag aagattgcta cagctagctc
       61 aattattact ttcctgggat gtcttgtttg cttccaccag acggaagtaa tataaaatta
      121 tgtaaatcag ctttcttgaa gtaaagaatc atggaccagt caataatgtt tatgcattaa
      181 gaaagggcag ctcctcctgg aagaaataac acagggagcc gatcataagc aaacatttct
      241 aaacagacaa agggctggtc cctgcagcac aatatattat catatttcca cataattagt
      301 ttgttttcca cttgaaatca gaaaacgatt cgacattgca ttctgtgcct caggatggtg
      361 catacagtac aattctcatg tgcaggttca tatgttgaat aattagtaag aattaatctg
      421 ttgaaattaa agtttggaat attatagaac tcatgaatag tgcatggaac catcaagtaa
      481 attaaaccag aaacagaatt taggaagcca gacaatagca gatgactgct ggcaatctgt
      541 tttttaatca gtgcgttaca agccagaggg atga
//
LOCUS       KCLJ01001254             474 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 140106cal ultra-conserved element locus
            uce-6824, sequence.
ACCESSION   KCLJ01001254
VERSION     KCLJ01001254.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 474)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 474)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..474
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="140106cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>474
                     /note="ultra-conserved element locus uce-6824"
BASE COUNT          154 a           89 c          101 g          130 t
ORIGIN      
        1 tgttagacat taaggctgat ctgtaccact acagcagtgc agaagagaaa tgtaggagcc
       61 tcaggacctg aaaagtacac ggaggcattt attaaaaaac agattgaaga gttcaaccta
      121 ggaaagagac atttagccaa catgatggga gaagatccag aaacttttac ccaagaggat
      181 attgatgtaa gtacagttgc tctgttggag aagtaattta ctgtagagtt tcagatattg
      241 aaagcacttt acttcagcat gagcccctca gctctctgtg aattttaatc aaactgtcag
      301 aataagcagg aatgctgcta tacattgcaa acattgcaac tgtgactgtg aatagacatt
      361 ctacttctgc taccatgtga ggtcacacat ccctgtatag agctgcatac tctatctaaa
      421 gcacggtagg ttcttttgga aaatgctaat ggataatccc cttgatctca ggtt
//
LOCUS       KCLJ01001255             611 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 140216cal ultra-conserved element locus
            uce-939, sequence.
ACCESSION   KCLJ01001255
VERSION     KCLJ01001255.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 611)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 611)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..611
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="140216cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>611
                     /note="ultra-conserved element locus uce-939"
BASE COUNT          185 a          138 c          133 g          155 t
ORIGIN      
        1 aagtctgaag agatttatgc taattaagtg gtttgcttgc agcatttcat ggaaaggcaa
       61 tgacaaaaca gtactatttt cctcgcctgc ttccacaaaa tatgttttat attctaagca
      121 gcactcacct agcagcttcc aggagttcgt ccttcttgta ttcacctaaa tgattgcaaa
      181 atatcatgct gttagcattt ggcagaagac agattaagaa atgcagtagg aagcaaatac
      241 agaattaaaa cagagaagag gagagcccac accccgctgg gtgatggagc tgtgacgtta
      301 gccagcttgt ggaggcagca tcaccagtac cttggagacg ggcagcaaat tgacgcatct
      361 tcttgtccaa tcctcagatg gaaaggcttt cttcggacaa ccaatgactg cgaaatcttg
      421 tgtccagaaa cacagtcccg ctgatagcag catgtcagct gaagacaatg tccccacccc
      481 ctgccctatt cagtatgtca cattatactt gggaagcata ataaattcca agacaaagca
      541 aggcagtgcg gcttttgaaa aggtacagat tactgatctc cgaggctctc acctgcctat
      601 ttgaatggta a
//
LOCUS       KCLJ01001256             653 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 140325cal ultra-conserved element locus
            uce-41, sequence.
ACCESSION   KCLJ01001256
VERSION     KCLJ01001256.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 653)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 653)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..653
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="140325cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>653
                     /note="ultra-conserved element locus uce-41"
BASE COUNT          219 a          128 c          105 g          201 t
ORIGIN      
        1 tctggcctat aaaattgctt tcaagtatgg caatcgttag gcttcctaac ataagtgtaa
       61 acgatttaca ttacactaat gtgcactacc tctgctcctg tagcttgtct ccaccttgtt
      121 cacatttctc aaatgaaagt gcaaacccat gttaattgtt agccatcaag ggttttactc
      181 tattaattaa aatatgtttt aatagaagga aacatagtac attttgataa cagccttcta
      241 aggctgaaaa gtatttacat tgttgcattt tagggctgct gtgaaagccg attttgtgct
      301 attcagggac cacaataata acgctttaaa attcctcact gggatgcaat gtagtccttt
      361 tgatggaaag actgtctttc tcattcggca gaaataaatc cattcatttg atcatgtagt
      421 cattgagggc aatacaaaac aaaccaagtg tgagaaattc tatgtgatga agtaaacaaa
      481 acaaaacccc cccaaaaagg ggaaaaaacc atttccatga caaaaagatt ctttgtcctt
      541 aatctaccca ccatatgcaa gcgtttcttt ttagcatatc tcttgttcta atctcgggtg
      601 acatggctac atagataaga ttcacaaaac aaaacaaaaa cctagtttaa caa
//
LOCUS       KCLJ01001257             537 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 140434cal ultra-conserved element locus
            uce-1205, sequence.
ACCESSION   KCLJ01001257
VERSION     KCLJ01001257.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 537)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 537)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..537
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="140434cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>537
                     /note="ultra-conserved element locus uce-1205"
BASE COUNT          130 a          100 c           98 g          209 t
ORIGIN      
        1 atttaaatta ttgctgttcc gaaacaagag ttgtctgctt tagtaccatg cttaggtttt
       61 tggtctctcc agttatttgc tgttgacttc tcagtgacca tctcttaaac ctgactgcta
      121 aactgtgctc tgtgtggtgc acttttcctt ctcctttgct gcttgtgttc cctcagttgt
      181 tgactgtgac tggaaaatag gcgtacaaag cattttgcat tctctgaatg taccacacag
      241 taattctgct gtctgaaaac tctgtaatgt caataattga tgcacttgag aagtggtaat
      301 taaattagtt aattatgctg gtaaaattac atgcaattat gtgactgcag ggtatgttta
      361 gtaaattagg ctttcccata ctcactacat attgtggtgc caattttgtt ccttgatgat
      421 taggtagctt ttgatacttc ttaattgatt taatacctgg atcttcatta gccctcgatt
      481 gctatgcaat gtatgtctga catttttctc tctgatattt cacggaatat cattcat
//
LOCUS       KCLJ01001258             623 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 140545cal ultra-conserved element locus
            uce-345, sequence.
ACCESSION   KCLJ01001258
VERSION     KCLJ01001258.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 623)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 623)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..623
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="140545cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>623
                     /note="ultra-conserved element locus uce-345"
BASE COUNT          217 a          107 c          118 g          181 t
ORIGIN      
        1 gcatcgtgtc cttttcattt cgccagcctg taggagagct gggttgggag gcagaaggaa
       61 aacatcatgg caggaatatt ggtgtatttt ggatgcaaag cagaagctta tctgttttac
      121 tactgcagca ccagagaaaa tcaattttga cacagaactg ccactttaca agaaaataac
      181 tatactttcc aataacctaa tctgtgcaaa gcctactgaa aattccctaa agaaccagta
      241 gttaaaacct ccattaaatc aaagggttta atatgggaag ggaagagagg atgcagtttg
      301 acttgggaat gtaatggact cagtggggaa ataaatatgt tgttttatgt gtacagttac
      361 agaatttgag aacacagcat tcatttcaaa gggaattctc ttgctgtgca acttattcct
      421 aaacagatgt gatttttgct tattcaaaaa catttaggta acaattacag cataataaat
      481 tataattgcc atcatcttcc agctatgcta tgacttctat gcaaacacaa agaaaatgca
      541 attatataga actgtaaatc ctattttcag gtagcttaga gcactgacag aacacttgcc
      601 ttagaatgaa caatacttta aaa
//
LOCUS       KCLJ01001259             408 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 140656cal ultra-conserved element locus
            uce-142, sequence.
ACCESSION   KCLJ01001259
VERSION     KCLJ01001259.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 408)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 408)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..408
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="140656cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>408
                     /note="ultra-conserved element locus uce-142"
BASE COUNT          121 a           77 c           90 g          120 t
ORIGIN      
        1 ccgcaaacga caaagaacga catgatgcaa tcttcaggaa agtaagaggg taagtccttc
       61 gttactgttt tctgtgtacc taagaaatgt gggccttgag gaactgtgtc cagtaattat
      121 tgtaagcaga ttagtgaatc tgaagatcta aaattgcaca taagttgagt catagcatgc
      181 ttatctgtat atttcctcat tagcatacta aataagctta ctcctgaaaa gttcgacaag
      241 ctatgccttg agctcctcaa tgtgggtgta gaatctaagc tcatcctaaa aggggtcata
      301 ctgctggtaa gctggttgca ttgttttgat gggatacaga agttttggat tatccccacc
      361 cctgcaaaaa ggatctacag tttaatggaa gtctccccag attgggct
//
LOCUS       KCLJ01001260             826 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 140756cal ultra-conserved element locus
            uce-24, sequence.
ACCESSION   KCLJ01001260
VERSION     KCLJ01001260.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 826)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 826)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..826
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="140756cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>826
                     /note="ultra-conserved element locus uce-24"
BASE COUNT          281 a          151 c          147 g          247 t
ORIGIN      
        1 tatttgtgca tgtatgtgca tacattgtat aattaaattt tccattgact acgacaacca
       61 tagaagaata atgatagaaa attaatcaac atatcctgaa gtttattttt cctctgaaaa
      121 acatattaga aaggtcactg tgatctgaga aaagagctag gaagtccctg atagcacctg
      181 gttatatata aataattttt catccccctt tacccctgaa gcaagagaag acctgctttt
      241 ttatcttgtt aatagaaacc gcaatctctc attaatatgc agggctagtg tgctgcttct
      301 caagaggaaa acctgcagca aggctttgcc attaatcaac ttcagcccag cagttcagtg
      361 agacatgatg atacatgttt ttaactctaa attaatgaat atctttacca actgtcaata
      421 aatgaagaaa aacactggtg aggaacacaa gttgaggtgg gaaatttcca aacacaacag
      481 agtgatgggg aagtgggcaa ctaacaagaa taataatgct gtcacacaca aacaaggctt
      541 aacatgatcc aggccctact caaggaaagg gttgtgctgc aatgataaat ctgccaaaac
      601 ctaattattt ttgacacatt agatgcatca gggaatcact gtgattcctt atcaagtagt
      661 ttttgcatta gaaagtgact gaacctgcca gccatctctt gggctacact cttcaatgaa
      721 agaagtaact ttgaatttta aaaggtacag attgctttaa tattcactgc aaaataactt
      781 attattcaaa ccttattggg gagactctca attttgtttt gttctg
//
LOCUS       KCLJ01001261             716 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 140861cal ultra-conserved element locus
            uce-1512, sequence.
ACCESSION   KCLJ01001261
VERSION     KCLJ01001261.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 716)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 716)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..716
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="140861cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>716
                     /note="ultra-conserved element locus uce-1512"
BASE COUNT          241 a          131 c          143 g          201 t
ORIGIN      
        1 tatgaacaga tcataacaat ccagtcaata attaggagat tacaagtttc tgtgttttag
       61 tgcatctatt tcaatgttgc cagacccgga gctgcatgaa ggagagggac attcagtggt
      121 gtgtccgtga gggggaaaca gtgaaaaata ataacccatt agcagtccat aaagttcaat
      181 ataaaatatg tttgtgctaa agtgttaaac aagtagaaca aatagcgtgc tagtagcata
      241 caaaattaaa acgagtcaca aatggatatt ttctatggca atttatttca caattactct
      301 tgtggaagct ttcatgaatt aaatatgagt tctatcttga aattaggtgt tataaggcta
      361 aattacaaga ggcagccagt aattgaggtg gctgaaacac ggggtctagt gaactaatct
      421 cttgctgtgc cacgtggctg tcccctcgcc aatgggaaac ctccccatga caaaaacaga
      481 ggcagctgag aaaaattgat ttctcatctg agccatattt gatagctttt gaaatcgaaa
      541 attgaaatta actaacctaa gccccattgt aacaaaagag caaattaaat atgcaacatg
      601 gcttcctatt ggcagcaaga gggcctgcca aggtaaattt gtaaatagag tttaagatgc
      661 aatcctcccc cctcctcttt ttcctttctc tcagtgcaaa aagtataagt ctgcaa
//
LOCUS       KCLJ01001262             641 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 140973cal ultra-conserved element locus
            uce-6479, sequence.
ACCESSION   KCLJ01001262
VERSION     KCLJ01001262.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 641)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 641)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..641
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="140973cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>641
                     /note="ultra-conserved element locus uce-6479"
BASE COUNT          174 a          129 c          141 g          197 t
ORIGIN      
        1 gtggtcagtg cagtcagtgg ccttgggcag acagtctgtg agcacagctg gcactgtcct
       61 tgtcacaggg cacagcagcc tgccttcact aaattcagag gtctgcaagg catacaatcc
      121 cctgattctt cacaataaat ctatggtgat ccaaggtaaa aacctctttt gctgttttgt
      181 gacattctcc tttgcaacct gtccacccct gtgaattctg cagagcattg ttggagggtt
      241 aattaaagca gtctgtttct acagcacgtt ctgtctgttt cttcttttca ttattagatg
      301 tgatgacaca tttgcctgtg tggcttcccg cagatggcac ggaaattttg tgatcaaatg
      361 ttaagagtaa accaactgtc agaactgatc acagcttcct gtattgctct gctggtgcag
      421 gaataccatt ttaataaagg gctcctgcaa gtgatagagt ttgcagcaag gatgaagtct
      481 gagagtaagt ctagctcaat attaacagat tcagggctct attgaggagc tttatgttcc
      541 atttatttgc aaacacttct aatacaaagc gaacattatt agtgattgcg gtttaattta
      601 caggcaatta aactgaataa aatacaaaat aatgtgggtg g
//
LOCUS       KCLJ01001263             298 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 141083cal ultra-conserved element locus
            uce-4050, sequence.
ACCESSION   KCLJ01001263
VERSION     KCLJ01001263.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 298)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 298)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..298
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="141083cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>298
                     /note="ultra-conserved element locus uce-4050"
BASE COUNT          104 a           59 c           47 g           88 t
ORIGIN      
        1 tttttataaa tctaaatcta cacccagagg tcactggttg gctgaactta aaccgtttta
       61 cttagtaaat ttaattaaga aaatacagtg caactcataa gcaaatgaga aaccaaacca
      121 ccctctcgag tgctgattgc ctcgctcgac ccctggtgat acagaaacag gcaaaattaa
      181 aaaggacatt aaagcttcat taaatctgaa acacatttag tacagtgaca tatctgcagg
      241 ctatttcggg gaagattaca gactcttttt tcttaattta taataccttg acaatgtt
//
LOCUS       KCLJ01001264             689 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 141189cal ultra-conserved element locus
            uce-1985, sequence.
ACCESSION   KCLJ01001264
VERSION     KCLJ01001264.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 689)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 689)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..689
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="141189cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>689
                     /note="ultra-conserved element locus uce-1985"
BASE COUNT          206 a          133 c          132 g          218 t
ORIGIN      
        1 ggaagaagga ggagaacaca cagttatcct ggatgtattt atattattag gctgagattt
       61 tttactgcag gcttcccttc tgtttgcagg tgaggtcctt ccccaggcac gcgcgccccg
      121 gcgctacgcg gggctctatt aaagccgctg ttcaatagtt tggtgatatt cagacaatat
      181 tgaaacattc ccaaatgaac tttgcaggga gacattttca ttcgctgcct ccctcctcat
      241 gcatattaac aaatggtatg caaggcctca tttaattcac tgattttaca ttcggatcac
      301 tttctctttt acagctattt ttaccgggct tcattaatct ttgttgaata caatggcata
      361 catctttaat gcggccgctg tcaagtcata tttcagtaag agctgcaaac tgaatgacag
      421 caagcaatat taataaattt aacatagact atatcaattt ttaacagaat gaatgtggaa
      481 agctaaatgt attatttttc gtttaaatca tagggtttat caccggttaa gtagcagcga
      541 tttcaggaaa cttgtgacgt gccgtacaaa tagatttaca tctcattaat aagtaaatta
      601 ggcaaatgcc tttcaagttc agacaagtac ataagtgtaa tctccatatt aaaggagtag
      661 tctttgataa accactgagg aattgcagc
//
LOCUS       KCLJ01001265             725 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 141298cal ultra-conserved element locus
            uce-5969, sequence.
ACCESSION   KCLJ01001265
VERSION     KCLJ01001265.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 725)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 725)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..725
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="141298cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>725
                     /note="ultra-conserved element locus uce-5969"
BASE COUNT          225 a          120 c          120 g          260 t
ORIGIN      
        1 ctttaattat atttaccatt tggaccatgg tatatttgag tgactcagag ttatttagaa
       61 gtgtttcatt ttcacatgtt tccacaattt ttctatagat aaattagaaa agcttgggaa
      121 attgcatact gaaaattgaa ataaggacta taaaatccat tttgagactt gccttttggt
      181 gtttacttca aagcatgctt ctgtgtgtgt gcttgattta catttagcaa tacctaagtg
      241 caaatagtaa tcatacacca aagtaaactg gactatatgc aattgcttcc tctgtttctt
      301 caattgcagt tgcaatccca tagattcaaa tcttgacagg tagcataatt agaaaattcc
      361 ctttgtctta ttaaatgtga ctcttctcaa tagaattcac ttcattgcag gcaaagaaca
      421 gaaaatatac ttcaaatcta aaatgggaaa tcaaggggga ctgttttatt tttatctgtc
      481 tttgtgcaag cgacattatt atcaaaggat attgtaatgc tgaaaatgta cttttgggat
      541 ttaaatcacg tattagcctg gaaagcaaaa agtgctgtag ggcccatgca atatattttc
      601 tcattaatct gattgaaaga ttatccttcc tatagctatg aaaagtctaa tacccatata
      661 tccatctttc ctgctagtaa aattcagctt tgtgcgtagt cattgtctct tgtgtctgag
      721 gtcct
//
LOCUS       KCLJ01001266             443 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 141408cal ultra-conserved element locus
            uce-458, sequence.
ACCESSION   KCLJ01001266
VERSION     KCLJ01001266.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 443)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 443)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..443
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="141408cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>443
                     /note="ultra-conserved element locus uce-458"
BASE COUNT          116 a          108 c           97 g          122 t
ORIGIN      
        1 agaaatttct tgaacctaaa gacataatct ggtgatccaa ttctccccac tgtgtccatt
       61 cccgtgaaac tccatttact ttctcctatc cgtcaccagc tcccccgcat cccacctagc
      121 caatcctcta ggtttcccac attgtttccc cttttgtctt ttcagtccaa acagaagaac
      181 aacagacaag gtttcgaagg gcagggagca tcaggggctg gaagagaatg gctaagatga
      241 gggtcagagt cccagcccta ctgccaacag ttactagggt ttgtgctgcc tggctgggca
      301 gtgttcaaag actttgctgg gctttgttcc actgtgtagg gattaggcct ggcggtctga
      361 gaatttgcct tctaattaaa aaggataaaa gatagaagta gcattagact aaaacatagc
      421 agtgatactt cacaggcttt ttt
//
LOCUS       KCLJ01001267             697 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 141514cal ultra-conserved element locus
            uce-4784, sequence.
ACCESSION   KCLJ01001267
VERSION     KCLJ01001267.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 697)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 697)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..697
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="141514cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>697
                     /note="ultra-conserved element locus uce-4784"
BASE COUNT          219 a          107 c          111 g          260 t
ORIGIN      
        1 taatttacag aagcaatttc ttttcaaatt aatagataca ttttgagttc agaaaattaa
       61 ctgtacaata taatgaatga tatttcaaga gctaagacaa cataatttaa aatagtcagc
      121 ttaagattca gaaatataat tttgcttttg ttgcagttga aaaatgaagg tttcttttat
      181 atactgtata tcccaggatg atttcaaagc actttcactt agagaagcta gctgctatta
      241 catatgaatt ttcaaagctt gccaaggctt tggaaggaat gatgaaaatt actattgcac
      301 gaccttcagg ttttctttgt ttcataaaag gctaagatag catttttgtc atttttcttt
      361 cagctcaggt ctttcatcat aaatatcaaa gcatgcaatt atgcctgctc atatcctacc
      421 gtattctgcc tgttttctat ccatagtgat ggtgttctct ttaaggatac ctttttcttt
      481 tgtttttcac aaatctgaaa gaagtcccat gtttttgtcg agtgccataa attgttcatg
      541 aaatgcatgt tgcactgatt aagaagaaga gttgattctt ttattctttt gttctaagca
      601 aaatcctaaa gtaatgtgta agtgtcaatc ctaagactga tttggcctac aggtggaatt
      661 tttaaatagt gctcattaaa ataggacaat cttctat
//
LOCUS       KCLJ01001268             457 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 141625cal ultra-conserved element locus
            uce-7038, sequence.
ACCESSION   KCLJ01001268
VERSION     KCLJ01001268.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 457)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 457)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..457
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="141625cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>457
                     /note="ultra-conserved element locus uce-7038"
BASE COUNT          102 a          122 c          113 g          120 t
ORIGIN      
        1 caccaaccag agtctgacaa ctggcaggtg gctgggatgg caagccacag ccacagccag
       61 atgggaaagg ggctggtgtt atttacctgg gactaaactc aggcaccgtt tgctaaaata
      121 gaagctgggc ttaaattgat tcctagtgtc tatatttcat gttgaaaatt ggcttgtaaa
      181 tccatgtttt gatctatgag ggccgtctcc ttaagaaaaa gcaagagtaa atgtgtaatt
      241 tctcccttga cagcacacgg cgcagaggcg atccttcttc ccgctcccct ccgtttcggg
      301 acagctccac tcgttccgat taccactctt tcttcctcgc cccacgcctt gatgtctcca
      361 tttcattacc gcccgcccat ttatcaagct gttaccgtaa gggtgacttt gcccacttgc
      421 gtgtggcagc ggggcctggc tgacacgggg agagggt
//
LOCUS       KCLJ01001269             501 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 141736cal ultra-conserved element locus
            uce-4190, sequence.
ACCESSION   KCLJ01001269
VERSION     KCLJ01001269.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 501)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 501)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..501
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="141736cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>501
                     /note="ultra-conserved element locus uce-4190"
BASE COUNT          150 a          111 c           91 g          149 t
ORIGIN      
        1 ctcctaactc cttgcctgat aaatgatagg aaagtttgac agatcagaac gatacgaagc
       61 agcctaaaac atttggcaca atgtgtgtct ggcacacaga gactgcttgt caaatgccta
      121 tgactccata cagcagctag ggaccctatg gagcagcaga tggaccatta aggtagtatt
      181 aatgtagatg ccatcagttt tcagttctga ctgggacata ctctttagaa ctatgagcag
      241 ctgctgccat ttattgtgac agcttcctgc taacttttgc caactggcac aatctgactc
      301 tttgtacctg agctattaaa tgtgtgattt ccacaatttt attcctccag agaactcttt
      361 taataatcct ctgaaaaggg aataaggcat ttatcatcaa agttaataca cataccatat
      421 aattctattg tcctttcaca cttctgtgga ttttacatca ggagtaagca taagcaagat
      481 tcccatgcct tacacaatgc c
//
LOCUS       KCLJ01001270             698 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 141841cal ultra-conserved element locus
            uce-5260, sequence.
ACCESSION   KCLJ01001270
VERSION     KCLJ01001270.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 698)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 698)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..698
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="141841cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>698
                     /note="ultra-conserved element locus uce-5260"
BASE COUNT          209 a          148 c          129 g          212 t
ORIGIN      
        1 ttcactcttt ttctctcatc catcatcaac ttatctgccc gcaagttaaa atggtaccaa
       61 ttattaatca aggccagagg cacccgttcc tgcataggag caccatgttt caactgtcag
      121 gtggcatcca tcccagcctc tctttgtcag caataaagaa aatgaaattg gactaatatg
      181 aatctcattt ctgccctgat taaaggccta cattttccct aggcattgcc tgaccaggtc
      241 ctgacttgtg agatattcaa tgttcttgta atgtcattcg gacacagcgt gcctgtctcc
      301 ttaggtcatt gttcttcaga ttcacttgtt ttacatggaa tataggctag aaaatctaga
      361 cttcctttgg ggtgttaatt aagagaagca tccaaaatta atcagcaaat tcactagggc
      421 gaaggggagc tgtctgaagg cctcgatata aaatgcactt ctagtacagg gaaatgagcc
      481 ttcggctatt gacaaagaaa aaacaagtgc acagacggca atctgacata aaaattcata
      541 tacgtataca attttacatt cattttcctt gtcagcttgt cacctttaat tataaaggtt
      601 gatttgctat ttggcagatc tggaaattgt aaacgcttgg ccatttgaat atcatcatat
      661 ggtcaatgtc ttcagaaaag aatgacacag gacatacc
//
LOCUS       KCLJ01001271             743 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 141951cal ultra-conserved element locus
            uce-2920, sequence.
ACCESSION   KCLJ01001271
VERSION     KCLJ01001271.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 743)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 743)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..743
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="141951cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>743
                     /note="ultra-conserved element locus uce-2920"
BASE COUNT          255 a          131 c          119 g          238 t
ORIGIN      
        1 aataatactt agaacactac attgaatttg ggagatttca ttttcctttt aatacaaact
       61 tatgtaaatc aggttctttt aaatcctata gagttttctt taataataag ccattgtttt
      121 gacattctac ttaataaaca aaaatttgtc aggagtgata cctacataca aaagttcctt
      181 aatttaaaac tgaaagacag agaaagcatt gcaaatttat gaatagtatt gccataattc
      241 tattataaaa gttattgtaa tactgagcgg gtatggtctg ctgttaaggt gcttctgtta
      301 tataccccgt agtttgccat ttgtaaacac atcttttgat gttgctgcca acatcctggc
      361 aacaaagcag tgcaatttca aatgagctaa ttaacttaat tgttgatgaa gcatgaaaca
      421 gttcattcac cctgttagct gcaccatgac aacataagag tctcagcccc tgaagttact
      481 catctatata agcctatctg tagctttcca ttaagatcta ttgcatgcca aatgagtatg
      541 gctcttctaa caaagaccag tccataatgt acataggcta caaatcagtg ctgttgttga
      601 aaattcaaat gaacacagaa ataaatactt tgtgcagaaa cccattgcag tttgaaggaa
      661 aaggaaaagc tgtgtcacta aatgctaaga tttagaaaat agctggctaa accaaatgct
      721 gtgacatcac ttttcattcc tga
//
LOCUS       KCLJ01001272             566 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 142062cal ultra-conserved element locus
            uce-7756, sequence.
ACCESSION   KCLJ01001272
VERSION     KCLJ01001272.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 566)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 566)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..566
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="142062cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>566
                     /note="ultra-conserved element locus uce-7756"
BASE COUNT          127 a          155 c          153 g          131 t
ORIGIN      
        1 ctgcctacac ctttggggga ccaaggacca ggctgatctg ccggtgcccg agggtgtccc
       61 aggacgcaga tcaacaggaa gaggggaggg gcggctttcc ttcccccgga tcgcctttca
      121 gcccctgtgc caggctgggg acgctgatgg tacaagagtc agcctttaaa agggagaggt
      181 tgcatcatgc ggggctgggc gggccttggg aggcagaaac ctcatctgtt aaacatatac
      241 cgctccgccg gggaacattc aatcctctct ttgatggacg tccaagaaaa tacttcttcc
      301 acatcctaaa cttgttagca ccagttaatc atcttaacct tcttgaacac acactccaat
      361 gagtttccca tcgctggcag ctgttaaaga cgcagcgacg ctttttgcgc cagccttcgc
      421 aggcgaatta aacctccagg ctgcaggtgg gacagcagca acccacaccg tgtgctggga
      481 tgcactttga actgtatcgg gtttgggtcc ctctgtgcac agcctctttg attgtgaagc
      541 agaagccctg gaaaatattt gtttgc
//
LOCUS       KCLJ01001273             443 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 142172cal ultra-conserved element locus
            uce-76, sequence.
ACCESSION   KCLJ01001273
VERSION     KCLJ01001273.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 443)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 443)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..443
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="142172cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>443
                     /note="ultra-conserved element locus uce-76"
BASE COUNT          122 a           96 c           90 g          135 t
ORIGIN      
        1 tgtgtgcatc tgtttcttcc tctgtgcttt cccttctcta ctcatccttt atctctttcc
       61 cactctttct cttttttcca attccattaa cgaaagtaga taataacttg tgaattcaag
      121 tggaacttca tttctgaaac cgtacactcg tgctggaacc cattaagctc gatagcgaga
      181 aatgagagaa atcataatta tcaggccagt aaaatacatg aaacataaaa tttgtcaggg
      241 aaagtaattg aaattattgg agcagttggg tcctggtgct gtgcagaccc tcagtgataa
      301 tggaaaggtt acgggcaatg tttagcaatg ctgatgaggc ccaaggtgac tcaacaccac
      361 cacagtcagc aactttatgc tctgcttaca ttaatttgct aatccatctt tggaaatggc
      421 caggctgagc agcgcgtcgg ggt
//
LOCUS       KCLJ01001274             357 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 142279cal ultra-conserved element locus
            uce-6206, sequence.
ACCESSION   KCLJ01001274
VERSION     KCLJ01001274.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 357)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 357)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..357
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="142279cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>357
                     /note="ultra-conserved element locus uce-6206"
BASE COUNT           75 a          105 c          103 g           74 t
ORIGIN      
        1 ctctccccta acctaattgc gcggtgtctg ggcgcggatc gatcgcggct gctgcaatgt
       61 taatgccgcc cgcgcgccgc tggcagctcc aattaatctc aggtaacgcc gcgctcgacc
      121 ttcgcctccg agccggggca gcagccaagc gatgcttatg taattacacc gtgaagtgtg
      181 taatcacctg ccctaatccc cgaggcctcg caattgggct gccaagtgcc ccgggccggc
      241 ccgcggatga atgagggaca attaaagcgg cgtgacgggg gctccgaggt gtccgctcga
      301 tcgtaattag ctgtaatcac ggcgagtttt ataagaagca atttaggaaa tcaagtc
//
LOCUS       KCLJ01001275             533 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 142388cal ultra-conserved element locus
            uce-3472, sequence.
ACCESSION   KCLJ01001275
VERSION     KCLJ01001275.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 533)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 533)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..533
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="142388cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>533
                     /note="ultra-conserved element locus uce-3472"
BASE COUNT          169 a           80 c           97 g          187 t
ORIGIN      
        1 caaagctggc aggaatttta catgaagaag tgtcagggta gaatttatac aatcttatgt
       61 gtgtttaaac aatacagtga agtaagtatt actttgtaag tgatgttgtt tgcatcatga
      121 tttaaacttt gtttaaatac ggtgatagca ttattgcact ctgtgcttgg ttaagccagg
      181 cggggttgat tatcattaag tgttatttat ttctatttta ttaagcctcc ttttacattc
      241 atgttacagg ttaatttata cttttatttc atgcactact tggctttact gattaatatg
      301 ccccatggca ttcaataaag ccaggcagtg gaggaaataa gagtggtatt aatttctaac
      361 attgctataa atttgcctta ataaaactag ctcaataaca ctgcggtagt agtacaatgg
      421 atgcttccaa attgttagca aagacacaac tgaaagaaca acacagaatt taagaatgcc
      481 tttttactag tgttcaaatt aggctacctg taataatact gagtgctctt aca
//
LOCUS       KCLJ01001276             547 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 142497cal ultra-conserved element locus
            uce-5898, sequence.
ACCESSION   KCLJ01001276
VERSION     KCLJ01001276.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 547)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 547)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..547
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="142497cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>547
                     /note="ultra-conserved element locus uce-5898"
BASE COUNT          175 a          105 c           94 g          173 t
ORIGIN      
        1 ttcaggttta ttttccccag ctctggaatt tgtccatggc ttgtatgctc cctgcagcac
       61 cagagtcagg agtcaatgct gtttgcacag ttcactctga ttatctctgc agtgccagta
      121 acctcagagc agtaaaccag tggcatatat atagttgaac aattatatgt attgtgacta
      181 aatttccccc aaagatctca ttcaggatgt tagagtgaaa ggatcataaa atgaattaat
      241 agctgattca ctgtataatt tcctagttca atatacttta gtgtaccagc taaatgagcc
      301 atacacagca ttcagctcag ccagttaaca gctttatcat tgagatctca ggcttagaaa
      361 taaaagcaat tcttctgaag taattgcgtc taattaaaag aaacatttaa aaagtgtaac
      421 caaaaggaat tcatttcaaa tggaaaatta atgctgaaaa atagccctga gctctcttgt
      481 ctttgctaat agctaagcat tctcagaata attaaactgt tttgagatgt tgataccttt
      541 ccctgct
//
LOCUS       KCLJ01001277             785 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 142607cal ultra-conserved element locus
            uce-837, sequence.
ACCESSION   KCLJ01001277
VERSION     KCLJ01001277.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 785)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 785)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..785
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="142607cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>785
                     /note="ultra-conserved element locus uce-837"
BASE COUNT          232 a          153 c          155 g          245 t
ORIGIN      
        1 acagtcacaa ctttaaatgt tttttaaatg tagttactgt ctttgatatc aagggactat
       61 gtgttcagat atacgctcac atgtccaact aactgaaagc ctcaatttgt gaggagaaga
      121 aaagcgaggc tggggacact gtacaaacgg tgtttacacc actgaagtgc ttttgaaatg
      181 gaaagactct gcatgaggag gcttgcagct atgccacagc cttgccgata ccagtgagga
      241 gctcatcttc aatgtagtgt tgaacgtagg tggcaaaact gtaatttctc tcttttttta
      301 aaactatttt ttcttctttt atttttgaaa ttttcatcta agcggcagtt tcttgtacta
      361 tagtgactcc tgctgggaga gttaagttga agtagctgaa ggtctcttac agatatatca
      421 actcccggcc agtaaaaaga tgtcctaaac gcaggagatg gagttaaact gttcccctac
      481 cttggacgca atggcttctt tcatcactaa gaacaaaccc ctaggtttta caattgagac
      541 tgagaaacta gtacagtact tgtacaattt ttgatctaca gcatcacgac gtgaagctgc
      601 aacaattaga tgtaaagggt ccattcatga ggaataacat cactttgacc ctttgtgtta
      661 gctcctactg ctaatctttc catacgcgtg aacttacttt caatttgaag aagatgaaaa
      721 agtcttttgc aaaaccccaa tactgttttc tgatctatgt acctgaatgt agaaacgtag
      781 tctta
//
LOCUS       KCLJ01001278             901 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 142718cal ultra-conserved element locus
            uce-5383, sequence.
ACCESSION   KCLJ01001278
VERSION     KCLJ01001278.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 901)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 901)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..901
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="142718cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>901
                     /note="ultra-conserved element locus uce-5383"
BASE COUNT          266 a          186 c          183 g          266 t
ORIGIN      
        1 tggcatttta gtcatcatgt taatgtcaac aaacaaggca gattaatgct tataatcctg
       61 agctgtctca cactctgctt attagaactg taggcagatc ttcattagga tgaatgacat
      121 ctgaatctat aagctcatca caacagaggc accttcttgc tgtggtgtca ccccgcagat
      181 gacaatgtcg gccattatga atgacactcc acaattcgtt gcttcctgcc tcaaattgca
      241 gttaatcttt catccaaact gtacacatgt gcagctttaa gtgggctatc acagcaagta
      301 tccagtaatg ctgcaagcac atggagaatg acagaaggta aattgcttgt caggaggtct
      361 gtatttcaat tcacagcata ttccaaacac gttgtggtga aagctctcca caacagctgc
      421 tttcattgct aactattttt gatgtaaatg tcaataaagc tccaggccct ttcatatttt
      481 tggccaagac tgtccatctt tccctatgca ggctggcagg ttgagctcca tttatctact
      541 cttaggaaca tgtcctataa taatgattgt ctctggagac cgtttagagt gattgaaagc
      601 agtgattggg acaataggct gctgaatttc attgctggat tgggttgaca ggtgactgct
      661 tttatatcct ctggaggaga gatggaaata aaaacacagt tatatctaat caacagacag
      721 gcatctacca attttaaatc tataccttca gtttaccctt cttatcagaa caacttaacc
      781 acaaattatt acaggactct catatttctc cagtggtcag agggttttca agaaaggaag
      841 atggggaaga tatgtgttgc ctcactagaa gtgagaagta gggaaagaac acgtcacagg
      901 c
//
LOCUS       KCLJ01001279             710 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 142830cal ultra-conserved element locus
            uce-7427, sequence.
ACCESSION   KCLJ01001279
VERSION     KCLJ01001279.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 710)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 710)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..710
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="142830cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>710
                     /note="ultra-conserved element locus uce-7427"
BASE COUNT          235 a           99 c          139 g          237 t
ORIGIN      
        1 ggaagttcag gattttttct acaagaaaac tccaatgaat tagtggtgac tagagagctg
       61 tgaaaaatac cccattagga gatgatgggc taaatgtagg tccatttctc ttagacaagt
      121 aggataacct ttaagatgca tggaacaaca taaaaatcgg gaaaactaaa gctgacattt
      181 gtttccaaga aattctgtga gaactatcta tggaaaagac atcagtgatt gagaataatg
      241 tactgtttga aacttgtgta tccatttctt taatctcata ctcttcagtg aacggtacac
      301 ttgtgttcag ttttatgatc aaaaacaaag accaaagaag gccagcctca tttgattgtg
      361 tatattctgc ctgtcttaat tatcaatagc tgtaaggata cagtgcaagt gatctggtaa
      421 ccagtggttc tcgtcctttt cttatagggg gaaaaacaat tttaaaatgt ataatttatt
      481 gctcagcaat aaccatgttg ttaaaataaa aaggaattag caacatgtct taatttccca
      541 atagcattat tatatgttgt atttcagttt actgtatatt gtgtttttgt atttatttgt
      601 gtttggaggt cttgctatgt ctttaaatgc taataaacaa ggacagtgtg taagagtgta
      661 gaatgctgaa ctctgaaatg ctaaactgtg ttattaaagg taagtaggaa
//
LOCUS       KCLJ01001280             417 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 142941cal ultra-conserved element locus
            uce-3849, sequence.
ACCESSION   KCLJ01001280
VERSION     KCLJ01001280.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 417)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 417)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..417
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="142941cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>417
                     /note="ultra-conserved element locus uce-3849"
BASE COUNT          141 a           76 c           63 g          137 t
ORIGIN      
        1 tctcactaac attgacatga aagtcaaaaa cccatccatc agagtagcca cagttacatt
       61 tgtatgctaa tcacataaga agcaaaaata ggcttagatt ggaaatcaaa gattggttgt
      121 atacaggtaa tagagtgctt gaatgcttta ttttaagata gaaggctctt gaaccaggct
      181 ttattattga actaagacta tctatccttt ttgacacttt ttaaattaag ttcttcctct
      241 aatttatgtt tttgtcagct ttcctccctt acctggcttt aaactgattc tctcaaagta
      301 ataaactact tcggagagga cagaaaaaaa ttttaatgac cctaggaatt cagattaaca
      361 aaatggatca tttgtataca gctgcagaat tacgaaacct tttacactgc ttctaca
//
LOCUS       KCLJ01001281             568 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 143043cal ultra-conserved element locus
            uce-2861, sequence.
ACCESSION   KCLJ01001281
VERSION     KCLJ01001281.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 568)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 568)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..568
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="143043cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>568
                     /note="ultra-conserved element locus uce-2861"
BASE COUNT          173 a          135 c           96 g          164 t
ORIGIN      
        1 tttcacctct ccctgcaacc atttcctaca cagacacaga atttatataa aaggctttcc
       61 tcagctttca tcaaatctag gttgcaggcc tatttcgtaa cattaattct ctccctcacc
      121 aaccgccaca tcaattcagt actttataaa ctatttcagg gatccgattt atcaggcctg
      181 acagagcttc acactgaaat aaacagcact gcctctgctg agctcgctca gtggctccta
      241 tttatcatta tttaattcaa gggcctaaaa ttctctgaca ttattaatag taagatgaat
      301 cactggaaaa ctacagaatc tgtgaccaac gaggctgaaa taatccattt tggtgaaaat
      361 gtctacgtgg aattgcattc cctgatgggt agctgctctg tcattagcgg ctccatatgc
      421 atgggtggta aagaactgaa gcatgaagtc cccaaagagt gggatacttc cattctcttc
      481 ccaacactta acaccaaagc agaaaataag ggaatgcagc acagctctaa tgcctctgtc
      541 agttgaattt aaatgtacta atttaatc
//
LOCUS       KCLJ01001282             580 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 143152cal ultra-conserved element locus
            uce-6291, sequence.
ACCESSION   KCLJ01001282
VERSION     KCLJ01001282.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 580)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 580)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..580
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="143152cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>580
                     /note="ultra-conserved element locus uce-6291"
BASE COUNT          178 a          129 c          126 g          147 t
ORIGIN      
        1 gattaggatc caaacacata attaagaaag tcagaaaggt aacctcgctt tatccagtaa
       61 ttagggctgt tagaaatcgg atactgtctc ttaaaagtgt tacaaataca cggcactact
      121 aaataacctg cactgctggg aaagtatact cgctatcaag ggcaaagctg ctatacactg
      181 aggtaacagt aaatgacaga ctgttgttca agtccattag ctgctatgtg ataggagcac
      241 attcactagc acacgacctg tgaaaaatct tagatctctt taaatctttg aattggattg
      301 ctgcattaat tcttaagaac tgcaatcctt caaccaagtc aaattaccct cattaacagg
      361 ggaaaaactg cctctgcaat aagttaaaaa aaagagatat ttattaccta taatcacttt
      421 cacgtacttc acctggaagt aaactgggac agaggctggc accagttcag ctgctggtgg
      481 ggccggggtg gaggggacac ggcgtgcgcg tgtcaccctc cgtgcctgcg cgcgctcctg
      541 cgccgacgtt cagcgggaat gcttcttaaa aacctcaatg
//
LOCUS       KCLJ01001283             690 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 143261cal ultra-conserved element locus
            uce-1634, sequence.
ACCESSION   KCLJ01001283
VERSION     KCLJ01001283.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 690)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 690)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..690
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="143261cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>690
                     /note="ultra-conserved element locus uce-1634"
BASE COUNT          238 a          108 c          119 g          225 t
ORIGIN      
        1 attcttttgt tgggatctat tcaacataaa ctgaaaaatt taacatttta cttcctagaa
       61 aggaggatga ataaacaagc atagactatt tcataagatg tgtctgtcct ttcctgaatc
      121 aggactccag gtttaaataa taaattaagc atagcctaaa atgcaaatga agtttctctc
      181 aataacacag tgagctatta agagaaagtg taaagggtta tgataatttt aaagtattat
      241 gaactacaga aaacaaataa aaagcatttt cagtgaatat gtccaattca ttgaactatt
      301 ctctcaatcc acttaactac ccacatgtgt acaataatga tttatagaca ttatacctaa
      361 ttatgcatat ttgggctgtg ttagagtgcc taacaaaagc tctagaaagc aacaattacc
      421 tctgttgctt agctacatag tttaaaatat tcctattaag tgcagattat tgtggagggg
      481 aaaaggggga caaaaatgca catgtgcacc acaatgcatt tcactttact gctgccaaac
      541 tgttagcatt ttgggtcatt tccagtttac ataattgttt ggttcaactg tttgttatat
      601 gttaaaagaa aatattgatt aattcttatt cttcttcaga aaattggact catgcaggga
      661 ggggtggcct tgtgcactgt atgcataaag
//
LOCUS       KCLJ01001284             596 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 143370cal ultra-conserved element locus
            uce-25, sequence.
ACCESSION   KCLJ01001284
VERSION     KCLJ01001284.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 596)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 596)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..596
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="143370cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>596
                     /note="ultra-conserved element locus uce-25"
BASE COUNT          200 a          126 c           95 g          175 t
ORIGIN      
        1 aaccttcagc cctatattgt aaatgtctta tgtctgtcca gatcgagtaa tttgcgtcaa
       61 gataaacata ttgcaggtac tgcaaaaatg ttggtaaata aagaccatat gcatatattt
      121 taaatttaag gaatattcaa ctattaatgg atatcaaagg aaagggaatt ttaatcatct
      181 ctccattcag tctcagttgg gtaaatcata tctaagagat ttgcataaat ataaaccatc
      241 aaagactttt catcttcaaa gggggtttca agaccctata agctttgtac tgtaatcatc
      301 gcaggtcaca accctgcagg aataaggctg ctatggcaac ataaaaaact aatgcttaag
      361 gcttagcata atattctgac taatagaaag gaaactcatt ttaaaagctg gcagcctatt
      421 taccagaagc tggattagag gtgttatttc cccttttagc ttccccccac cacccctccc
      481 caaaagaagg aaaatctaat cacccagatc ttgcaatttg cagtaacttt acaattaggc
      541 caaaataaat cacagctttc tctgatgaag cattctgccc ccctacctct gctctg
//
LOCUS       KCLJ01001285             704 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 143479cal ultra-conserved element locus
            uce-4681, sequence.
ACCESSION   KCLJ01001285
VERSION     KCLJ01001285.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 704)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 704)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..704
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="143479cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>704
                     /note="ultra-conserved element locus uce-4681"
BASE COUNT          220 a          152 c          154 g          178 t
ORIGIN      
        1 tggagggaat gggcagcctt gcaatgttcc caacaactcc tggagccacg agcccaaagg
       61 gaccaatgtt gctggggcca agagtgaccc agggtcttgc ccttcagcct ctgtgcctgt
      121 tcctgcatat gcagcatccc tggctggcag ccttccctga gcaaacaaag cgaatgctgc
      181 catcaccccg gccactcacc gtccaggaga gaaggggagc ggcgtgcaca gcaatacagg
      241 gaaaaaagcc aatttcatct ttattagaag gagatttctc ttttagtaat aagcacactt
      301 caaataatta gcgtgtttta cgtaataatg aaattatgga aatgcaggcc acttattcaa
      361 acaagtcacc attaccatat ttttaaatat tagacttaat tagagtttat cacttcagag
      421 aagtacgagg agtggagatt tttttccttt acaaaaaaaa tcctcataaa gtgtttatta
      481 agagcgggta agaaggggat aatgatctgt ttggaaatta aggcaatcaa acatttaatg
      541 ctctgcactc ctgtaggcaa aagcattcaa atgagtcaat tatacatcca ttatccaggc
      601 acgattaaac aaggcaggac ggggaatttg tcctccgcat catgcgattg tcgcgaggac
      661 ttatgtccac ttaaaggcag ctaataaaac actaaacttg ggaa
//
LOCUS       KCLJ01001286             667 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 143587cal ultra-conserved element locus
            uce-1802, sequence.
ACCESSION   KCLJ01001286
VERSION     KCLJ01001286.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 667)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 667)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..667
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="143587cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>667
                     /note="ultra-conserved element locus uce-1802"
BASE COUNT          192 a          121 c          147 g          207 t
ORIGIN      
        1 atacccagaa atttgtggaa ttttgtcctc taacctcttc ccagttatga acaaaaggat
       61 gctgggctga gtttggtcac aatgatccag ttaccagcct catgccaggc cttaaaaggg
      121 ttaaagacgt taatggtgcc gttaaaaatc cagcttgcca atgagctatt ttgtgcaaat
      181 ggtataaata taagatacac ttgtctggct catttgcaag cattcttttt gacttctttc
      241 acacaactgg tgtttttgtg tttaatttaa caagaaatga gtagtaaatg aaagctgctg
      301 cctgaaatcc cactgtgagc gtgttttgca cttggctccc cagtgaaaag gcaatttgtg
      361 aaattatgtg atagagtaat tagatgaagc cggggcttct gattgttgcc atgcgtatgt
      421 ggtaaaggtt tgctggggac acggattatt accctggcaa gttggctcaa ggcttcttca
      481 tttatttgta aacagaatat ttagtgaccg cataggaagt agctgtaatc accagctcgt
      541 aaagaaacca cagcagagct tttggatttt tacagagtgc tcatgtaaaa tttaagctgg
      601 gaggcagaat ccctgttaat gtaattagga tctaatttac caccctttgc acacagatgt
      661 aataatg
//
LOCUS       KCLJ01001287             610 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 143698cal ultra-conserved element locus
            uce-4083, sequence.
ACCESSION   KCLJ01001287
VERSION     KCLJ01001287.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 610)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 610)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..610
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="143698cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>610
                     /note="ultra-conserved element locus uce-4083"
BASE COUNT          207 a          107 c           97 g          199 t
ORIGIN      
        1 aaaacatttc cacagatgca gaatatcatt tataactgct cagtattgtg ctataaactt
       61 aaaagaaaat taaacaaaat atattcttta ttaatgttat tgtgaaaatg tgttccataa
      121 tcgaaacatc tactggaaac atctactcag ttcctgaaat catctctatt agattatgta
      181 gataccatct aagaaaatac ttctaaactt aatctgtcaa gacttcaaag agtctataag
      241 caaatactta gatttgcatt agatttttga ctttgaaatc cattattgta agttccttgc
      301 tgactttgat gtgctgcctt tacacctcct ctctgagaaa ggaagtgtaa aggcagcaca
      361 ttagtttata gatgttcgca gactgttttt cggataaggc catttaaatc tcttttgaag
      421 gtcaatccca gctcttatca ttcaagaagt aataataaca gagagagtct gcctagacta
      481 aggactgctt taaaacacaa aatagcaggg gtggaatgaa cttacttaac tcttgaccta
      541 gcacaatatc agcattctag tgttttgctg tgacaatgcc ctgctaaggc atagtgtgaa
      601 atttcaatat
//
LOCUS       KCLJ01001288             619 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 143804cal ultra-conserved element locus
            uce-3632, sequence.
ACCESSION   KCLJ01001288
VERSION     KCLJ01001288.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 619)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 619)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..619
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="143804cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>619
                     /note="ultra-conserved element locus uce-3632"
BASE COUNT          174 a          139 c           88 g          218 t
ORIGIN      
        1 aaaaatgcaa aggaaacaaa aaataaccaa aattcagaca ttcaaactcc tcatctgaaa
       61 tcccttttag agagatttct gccttccttt ccctacataa ctaagcaaga aggaaagcct
      121 aaccaggatg ctttcctcct gcttaaaatt ttctctttgt ctatccatat atttgttctc
      181 attctcagca gaaaaacctt taagccttga agacttttgt ttttttgctt tggtgtcagt
      241 tgatttctta tcaaagtgtt tgatttgcaa tttttttctt gtcgtttgca gaagccgaaa
      301 gcggtatgcc ctcttcgtta cctttccttc caacctcaat cctaccttca ctccttctaa
      361 cttcaggact aattccttgc caagaacaca ggaagataac atctttgtct atctttctct
      421 gtatatacac acacatatat acctgtgtat atatttatat atgagccccc agtctcaaag
      481 agaacatcat tttgtctctc cagtgtttct tgtgactcat gcactaactt ctttgcagga
      541 agtacaaaat aaaacttttt taggccccct ttgtggagtc attggtgtat cagattgttg
      601 catttgaaaa gcagatttc
//
LOCUS       KCLJ01001289             688 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 143908cal ultra-conserved element locus
            uce-2849, sequence.
ACCESSION   KCLJ01001289
VERSION     KCLJ01001289.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 688)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 688)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..688
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="143908cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>688
                     /note="ultra-conserved element locus uce-2849"
BASE COUNT          206 a          127 c          154 g          201 t
ORIGIN      
        1 aaattaaatt gatctattat agtgcatggg ggggggaagc tttccagttg tctttctaat
       61 gtgtacttta ccaaataaag atagaactgt gagaaagcaa accccatgtg ccatccctgc
      121 ctcgcagggc aggcagaatt gtctttccag gggaggacat taggagaaaa gtaaatcaag
      181 gcaatctgat agggaatcgg gactctgtca ctcagaggcg agatattgtg ctgtgtccat
      241 atactttgtt tacttttatg agttgtaacc tgcccatgca agctgttaat gaggctaaat
      301 ctttctgctg gaggattgaa ttacagcaca cctctgggct aatggttata aacagaaagt
      361 cccattaggg ctgcattctg atgcagtcat ttgcactatt gtgccgagaa caatgctgag
      421 taaatagcta caaacaaaca atttacatgg aaatggataa aatgtaccta attagtattt
      481 tgttgtttta ttaatgattg cttaaactaa atagcactta gcaacagctc tcaccagcct
      541 ctgcaggtgt gggatgctca agtttctggg gaaggttgcc agaaaattag gcagtttgtt
      601 atattccact tagttcaggt caacagcctg tacctgggat ttcaggtcat tatgtcaata
      661 atacataaac ttatcggcaa gccaagca
//
LOCUS       KCLJ01001290             738 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 144021cal ultra-conserved element locus
            uce-7692, sequence.
ACCESSION   KCLJ01001290
VERSION     KCLJ01001290.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 738)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 738)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..738
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="144021cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>738
                     /note="ultra-conserved element locus uce-7692"
BASE COUNT          227 a          154 c          150 g          207 t
ORIGIN      
        1 taataaaatt ttccctaatc gggctctgtc agtgaggtgt cttatcgtgg ggaggaaaat
       61 gacaccgatc ctatcgaaaa acagagacga tgtcacagtg tccgcaatca cagctactca
      121 gcctccatat ctaccttctc cacaaacacc aagcactgct ttttcataag aacatcaaaa
      181 cccagcgaag tcattaaaat tgcacccgcg tagagttgca gggatcagcc gcactagcgc
      241 aaaatgggat gtgggaaaac agactctcta aatgtgctaa ttccattgtc acgtgtttac
      301 ggcttaattt taatcagtta aaaaagccac acattgcaat aaattggcat tatcttctgt
      361 gacaccagag gacacagttg gttcaaggat ttagagggtc gctggcaaca gtatatagtg
      421 ttacagacaa agtattttta cgcttgaact acggtagcta aggtgcaatc cccagttaag
      481 actgcaaaca aagactataa cccacacagt cctaagttca acatgcagac caccttcagc
      541 ctggagacag tgtagaatgc taaactgaat agtgcttttt ctaatttaat ggttaaaagt
      601 aatttgctgg ccagtataat tgaggttgca gttcagtagc gttctcttat gtgtcctgta
      661 ccataatgaa gaaagatctg ttggaaaaat ccctttgctg tatttgcatt cagtttctaa
      721 attggtggtg cttgttta
//
LOCUS       KCLJ01001291             346 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 144132cal ultra-conserved element locus
            uce-3126, sequence.
ACCESSION   KCLJ01001291
VERSION     KCLJ01001291.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 346)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 346)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..346
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="144132cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>346
                     /note="ultra-conserved element locus uce-3126"
BASE COUNT           97 a           72 c           72 g          105 t
ORIGIN      
        1 agtgcagtag aaaaccgagg tggcaatggc ttgtttgttg ttccactcgc tgagaactcc
       61 cagtctccgg cagctcggct ccgggaacgt ggaggcacaa cacccaaact gttgtgattt
      121 gttgccatga tgacagtgtc aacttaacta cagctgacaa acagttttta aatagaacat
      181 ttcaattcat tatagtactc tccatctgtt ttttttcacc gtctgcatac atgcaaaaca
      241 tctgagaaat gctagtttag tttacttatc tagccactaa cattaattag ttgttgagag
      301 tggtagttta gggagcaagt aaaatgatgg aattctcccc tcagta
//
LOCUS       KCLJ01001292             491 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 144232cal ultra-conserved element locus
            uce-4939, sequence.
ACCESSION   KCLJ01001292
VERSION     KCLJ01001292.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 491)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 491)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..491
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="144232cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>491
                     /note="ultra-conserved element locus uce-4939"
BASE COUNT          162 a           88 c          108 g          133 t
ORIGIN      
        1 ggggagtgaa tttgtgtgaa gagtgacaga acgctttgtc cagcgcagct ttggctggtt
       61 gtaacaagcg tcaggacatt agacgcaaca aaagctggat tggcagtatc atcaatcaca
      121 gctctgacag tcgacttcag tttgtttgtt ccactctgca taataagtga ttggatcagg
      181 tttaattaga tattgggtaa tcaatcattg ccaacaaggc aacccagctt gggatctaga
      241 tgctgcaaag gggggaaaaa aagcaaatct catccaggat gcataaatac tcaaacctat
      301 aagcacatag ggtgaagctt cagaggaaag gtataaagat gtctgcaaga tggcacataa
      361 tagaatcgtt cacatctgta ctacttgtta ccagacatct gcagtttgac attttacttt
      421 cgctgcataa ttacttttca atataatata atatactgac ctgagggaga aagacaaagc
      481 aattaaatta t
//
LOCUS       KCLJ01001293             725 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 144339cal ultra-conserved element locus
            uce-5757, sequence.
ACCESSION   KCLJ01001293
VERSION     KCLJ01001293.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 725)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 725)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..725
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="144339cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>725
                     /note="ultra-conserved element locus uce-5757"
BASE COUNT          188 a          191 c          172 g          174 t
ORIGIN      
        1 agtttaaaat catcacccct tgtccaatca ctataggcca tgctaaaaaa tctttcttgt
       61 aagcctgaag aaacactgaa agctgctctt ccctgtgcct gtcgttcatc acggaggagg
      121 aggggagctt atttcaagga aaccaatgga tccaaactct tcgccaaagt ggactcagtt
      181 ccccttgaca caacatccta attcgacttt ttcagtatct ttccttcaac aacctttttt
      241 ccttcctccc cttcctaccc agcaactgcg catttattaa ttcatgaggc actaattagt
      301 tctttgttta attttgtgtt aaacagactg accggaatga taacgacttg cagcgttgca
      361 ttacggtccc caaccgcccc tgttttctga caacaaggga gcgcagtgag actggcgtga
      421 tgaaccccaa ttcccactcc agttgcactt cattaagtca aaatgtgaca agaagcttag
      481 agagcaactt tcagatcgga tcgcacataa caattgggca ggaaactttc caagggggaa
      541 gcgcgagagg cactcgcagc gaaggctggc accgcgcgcg gtcccctggc gtgcctgcct
      601 taaaggagcc agctcaggct gtccaggcag gagccagggc atgtgctggg agcagcgagt
      661 gccagaaggg cagcaagaca agccaaaggc aggcggggtg ctccccttca atgatgggtg
      721 gtgtt
//
LOCUS       KCLJ01001294             702 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 144445cal ultra-conserved element locus
            uce-1313, sequence.
ACCESSION   KCLJ01001294
VERSION     KCLJ01001294.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 702)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 702)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..702
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="144445cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>702
                     /note="ultra-conserved element locus uce-1313"
BASE COUNT          198 a          152 c          137 g          215 t
ORIGIN      
        1 ccgggcgagg ctgctgaacg ctgcactttt ggattcaatt aaagtgatta tctgttgtgc
       61 caaataaatt gtgtccagca tctatcctgc aggattttac acctccagcc tcattattcc
      121 ctaactgttt cctcctgttt atgctctctc caattaaatt gctgataata tccaaaataa
      181 aaaacgagcg caccttgtcc ggagaaaatt gattccccct gcaccgggcg attgccaggt
      241 tttatatact ctgttcctgg cgatcattag taattcaatt ttctttttat tagccccctt
      301 atctgctgag caatatagtg gcagagctga cctctttctc cctgattaat tttgccagtt
      361 aaggaaaaga ggagaaatga tccggctctt tgccatcaca atgaataaag cttaatgttg
      421 attgtgatgg aatttctaat gccaaggaaa ttgattgaac gcagcaatta ccccgcaata
      481 ggaactccag ggaaatggga tggccccggc cgtagccttt tggttattta aaacaatcca
      541 atttgcaagg ataattatat attagtgttt tatctgccac cgggaatgaa catgggaatt
      601 ttgatactgg cccggcatta gcaggttatt gctgcaaatt actccagatc tgctttcttt
      661 cacataaaga cgaaattagg ccatcaataa ccagaaaaag gt
//
LOCUS       KCLJ01001295             888 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 144536cal ultra-conserved element locus
            uce-692, sequence.
ACCESSION   KCLJ01001295
VERSION     KCLJ01001295.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 888)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 888)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..888
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="144536cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>888
                     /note="ultra-conserved element locus uce-692"
BASE COUNT          292 a          122 c          151 g          323 t
ORIGIN      
        1 taaattaaag taaagcatct aattcctcaa atgcagcttg ggaaggtgat attgttggtt
       61 tcaagaagtt tcttgtaagg aattttcctg tgaaatgctt gattgagtca atcaaaagat
      121 gggatattac acatttgata attttgcaca tgacagacag tatttcgtac cggtaggtca
      181 tttgattctc tgcaggtggc tctgttggtt tctggaatat tatactgtga attacatgtt
      241 acacaaatga aaggctgtta taattctgga taacattgta tttgattcta taaacatctt
      301 taggcctaat gcaaagatcc ctttgaataa tttatccagc taagtgtctg tggtcccaaa
      361 cttctaattt aaaaatgttg ataaatgaag tatctcttta gctaataaat gaagtatctc
      421 tttagttatc ctttgtcagc aacattcatt ttaatggaaa gtgagtttac agggttacat
      481 gattgaacta ctgagccaag tcagtgttgg caaatgatgg gctaaattat tgatgttaca
      541 cactaatgaa ttctgatgag aaataaaata cagacattac atttcaagtg gttcataatt
      601 atttttgcac tttaaaagca attttattct ttttccaaat catactggtt ctgtaaaaca
      661 aaaacatagt tagtgattat aagcaaaatt attgagtttg aagcaaaaat gcttctgtaa
      721 gttttcttat gcaagtataa tgctattcac tctaggattc tgatttcttc ttatacttct
      781 gggagaggat aattaaatta aatgtctaaa ttttttaacg gctgtcttta aacaaaataa
      841 tctacttttc aaccataaga gttcagtaga tgagtttata atctatga
//
LOCUS       KCLJ01001296             660 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 144649cal ultra-conserved element locus
            uce-7009, sequence.
ACCESSION   KCLJ01001296
VERSION     KCLJ01001296.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 660)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 660)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..660
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="144649cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>660
                     /note="ultra-conserved element locus uce-7009"
BASE COUNT          177 a          144 c          105 g          234 t
ORIGIN      
        1 tttcttgggc agcctgttcc aatacttatg tttcgtaatg tatttgccac tgagtatact
       61 agtcacagca agatctttca tgcatattaa gctatttcac tacttatttt cagccaaatt
      121 caaaattgca ttaccaggat tatgatgagt cacagattct ccattttgaa atacatctcc
      181 agccacgttc attctaccag gattgaaagg tcctacacca gtcttggtct gtgaagtcaa
      241 agatggggtg tatgtttgca aattaacacc aaaattatct gactgcagtc cgttagatac
      301 atctcccaag ctggcattgt gcagtgacgt tacatgtgta atcattaggt tcatgtcacg
      361 cccgtcacca tcattttcta aatgaccaac actgacagat ctcatagcac ctgtttctaa
      421 tgtagtaaca ttagcaatct gaatttctga gtctggttct gtggttatac cactattacc
      481 tatccctgaa tttaccttac ttcttgaaaa actggaaggt gagaattcca tttcgttggt
      541 tctattttta cactctggaa gtcttcgttc attaaaactg gaagcattct tctcttgtcc
      601 ttgatttgtt tcaatatctt cttcatcgtc aataataata gtttcactta tactcccctt
//
LOCUS       KCLJ01001297             584 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 144750cal ultra-conserved element locus
            uce-2247, sequence.
ACCESSION   KCLJ01001297
VERSION     KCLJ01001297.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 584)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 584)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..584
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="144750cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>584
                     /note="ultra-conserved element locus uce-2247"
BASE COUNT          154 a          114 c          149 g          167 t
ORIGIN      
        1 atcccggcaa ttcctcgcct tcgggaggtt cgcagaaggg agatttttga cattttacaa
       61 ataaaaagag atgcgggtta tttatgctgg gatgttgctg caaagtcctt atctccatgt
      121 ggcactaaac aaggatttgt tgtgggattt gagagggctg tgtagtgctt cagtgttaag
      181 cacccaaaac tctgggggac tggcactaat ttcctctctc tcgtaaaaca acatagtatt
      241 cataacaact cgagaggctt gacataagta atgatggcat atgcaggcga agattaccac
      301 cccaacagtg taatcaaggt gctaggtact aatgcaagtt aaattgagac aataatgctg
      361 aaacttgcat tgtgggatta ggagagtact tgaaatgctg acatcggcat ctcctggaag
      421 cgcgcctgtc ttcctttcaa ttcctgttta tacttaatga cctcaaaatt tgtatgtcgt
      481 taacaccgcg ttctgaagtg ggagagaaca aggtttggga gggagaagat tccctgcctt
      541 cgttgacttt tgtctctcct ggtaattggc ggcggctggc gggg
//
LOCUS       KCLJ01001298             651 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 144859cal ultra-conserved element locus
            uce-4931, sequence.
ACCESSION   KCLJ01001298
VERSION     KCLJ01001298.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 651)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 651)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..651
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="144859cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>651
                     /note="ultra-conserved element locus uce-4931"
BASE COUNT          190 a          113 c          139 g          209 t
ORIGIN      
        1 aaaaaagttg ggatgggatg cggaaaagtg acttggagga aatactttct ttgccagtta
       61 ccagaatctg cactcaattt ccaagtcctg gttctattaa attccagaca aataacacag
      121 actgctggag cagcactggt tattttgcaa ttggctgtgt gaaagctgag gttataagaa
      181 ctgtttaaga tttgaaatat ttttgttcag aaatctgaca tgatttgcta gttgtgacaa
      241 ctggtttgac aatgaccagt gatttaggtc tacctgtaat aagtgaatta atctgagtta
      301 aaacatagtg atctgtcatg tttagagata cctcaacagc tggctgactt gtcctctgtc
      361 aagctagttt gtcctgtgca aatcttctgt caagtacaga aaagaactgt tgagagaaaa
      421 ttacatggca gtttcagagt tagtgatgaa tttttctccc aacataccag ctgtgccagc
      481 aatgctgttt tttgtggcat taatcaaata tcttgcctgg agcaccttct cttttccaaa
      541 ggctagaaga tgaatctgtc aaaaaatttc actgggattt gccaagagct tttcctaagc
      601 tcaggtactt agtccatgca cttcgaaagt ttgaattagg gatggtgttc t
//
LOCUS       KCLJ01001299             539 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 144970cal ultra-conserved element locus
            uce-3227, sequence.
ACCESSION   KCLJ01001299
VERSION     KCLJ01001299.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 539)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 539)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..539
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="144970cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>539
                     /note="ultra-conserved element locus uce-3227"
BASE COUNT          194 a           86 c           95 g          164 t
ORIGIN      
        1 aggcagaaaa ctaaagaaat aggggtcaaa ttccttctgt gagatctacc ttgtaaaatt
       61 atccagaatg taataatacc atgttattga tttaagcaca gttccctgtg acatgctgca
      121 gctgacctgt aatttttatc ctacatgttg ccagcactat taaaatgaca cttgtgaatg
      181 taaattaagc tcacaaaggg gacagattgt atgattctgg tttctctcag atgcctgtag
      241 gctatcacag gttccatatg tgaagtaatt atgttcactg aaggaaagaa taaatgctgt
      301 caaattgtgt actgagagag aaagcagcta ttatattaca gtagtcactg gagcattgcc
      361 ttagaaagtg aaaagatgta taagaaaata ataaaaaaga aaaactggag cagagctata
      421 ttaaatataa cctttaaatg agtatctgct tttgaataca tattacacaa agctaatatc
      481 tcacaaataa aagcatttta cctttttaat cacattttct ttctcacatc tagagggca
//
LOCUS       KCLJ01001300             646 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 145077cal ultra-conserved element locus
            uce-2048, sequence.
ACCESSION   KCLJ01001300
VERSION     KCLJ01001300.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 646)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 646)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..646
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="145077cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>646
                     /note="ultra-conserved element locus uce-2048"
BASE COUNT          189 a          117 c          138 g          202 t
ORIGIN      
        1 aatgaggaaa tatggtaagt caacagatat taattaaatg ttcaaggcag gttttaaagt
       61 acctttaata tatgttgctt ctaatgacac tcaagtgtgc ttaagggagg tcagagattt
      121 ttagatcccc caggctctcc aaagatgcct ttccataacc aaatgctttc atatgggtaa
      181 tcgaaagaaa cctttactca accactgggg agtctttaca gcctggcttc gattggagtc
      241 tgagtggagg cctgtgagca ggatttgtaa gcatttctaa tggcattttg atgtacatgt
      301 acaaaattga tgtcggaagg atcattgtaa actcccaaac agtggaatat tgaggacatt
      361 ttcaggtggc agtcagattc tggctgggtg agcccagtat attttctcat gtcacagttg
      421 attaggttca cagggaagtg gaaagagtaa aaaattctct tattactgca gcaatgccat
      481 atcagcctct tttccctttg aatgcaacat tagtttttgt ccagaactct aactgctttc
      541 tacagtttgg ggaattgtaa agcagaaaca attttcccag ctaggctgac cttcacagta
      601 atgagaaatg actggaattt ctctctattt ctctaacatt tggtga
//
LOCUS       KCLJ01001301             657 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 145187cal ultra-conserved element locus
            uce-6165, sequence.
ACCESSION   KCLJ01001301
VERSION     KCLJ01001301.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 657)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 657)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..657
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="145187cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>657
                     /note="ultra-conserved element locus uce-6165"
BASE COUNT          203 a          139 c          123 g          192 t
ORIGIN      
        1 ggagcttgcc tgaagcttgc ccagccaaag ccacaaccat atcttgcccc taaccggtgg
       61 agaacttggc agccaagcac acctgcagca ccaaaagtca gtgctgaaag cagacaagtt
      121 ccaccaccct cccagagaca cagggagtgg gcagggaaag ggagaaggga agggaagaaa
      181 gggacttagg agtacatgca cccacatgta aagctctgac aaacagtcgt gtgatttatc
      241 atcatactcc cacttgtaac tctaacctaa cagtgtgtca tctttacttt tcatgttatt
      301 tatttacaag tgcattttca gtatcaaccc tttcattcat taatcctaat gtggcctttt
      361 tcaatgtcta cttaccattt taaatactta ctataattta cagggctttc ttgaacacat
      421 ccaaggtata ttatatgggg ctagcttaat ggaaagtctt gtacaccaaa gcaggaaaaa
      481 agcacattta atttatgatg gctttgaatt ttgctcataa tttacttctg gagaactatt
      541 catataaagc cacaccaatg agaattttca gtgacgatgt agaaggcaat aaatgctgat
      601 cttattattc atttttattt tgaaaacctt cccatgttgc attctgggat tatgtaa
//
LOCUS       KCLJ01001302             665 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 145294cal ultra-conserved element locus
            uce-4151, sequence.
ACCESSION   KCLJ01001302
VERSION     KCLJ01001302.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 665)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 665)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..665
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="145294cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>665
                     /note="ultra-conserved element locus uce-4151"
BASE COUNT          216 a          111 c          141 g          197 t
ORIGIN      
        1 aaatccaaat cagattctga attagagatg tttcttgatg ctgtggcaag ggggagggaa
       61 aacagcgctt gtaaaatatt tttactgaaa cttaaaggca attatttctg aattcccatt
      121 ttcttaatta aaagtgtcac cgatttggat ttaatcagca cttaacaagc cttattgtga
      181 agggaaagag ctaaacaatg tctgtaatag actgggaggg ttagctgaac tttgtttaaa
      241 tataaaggga gtagtgcatc tgctgaagaa ctaagccctt tcaaagttta ggacactcac
      301 cagcaccata gagcataaat cacagtgcaa actgtgtgat tataccctgc agggaaatag
      361 actgtgtgtt tatggggctc ttcaccaagc acttaggaat aatctgatat aaagcagcag
      421 gggaggagag taatgacaac ttcaaattag tttaatgaat gtttacatta aaaaaggctt
      481 ttctacaaac ctgaaaacac aaagtgacag tttcctctcc agacaaaaga aaccccctct
      541 acttttcctt aaaggactgg caatggggga agacattgta aatttaactc tttctgtggt
      601 ggatcattgt atgtttatgt gctgtgtttt gctgtcatta cagtgacagt tgctgggaat
      661 ccaat
//
LOCUS       KCLJ01001303             636 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 145408cal ultra-conserved element locus
            uce-3614, sequence.
ACCESSION   KCLJ01001303
VERSION     KCLJ01001303.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 636)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 636)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..636
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="145408cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>636
                     /note="ultra-conserved element locus uce-3614"
BASE COUNT          123 a          124 c          234 g          155 t
ORIGIN      
        1 cctgctgaac gtctgcccaa atcagaacca ccctggtgag tactcacctt gtaatttccg
       61 acgatggaag cgaggagacc ccaggaaact attcttgatg gagttgagcc gtgtcctcca
      121 aggcattcct ccaatgctgg ggctggatgg tggtgttggg ttgggtgtgc ctgctgggct
      181 ctcctttggc gtatgaacag gtgtcccctt gggggtaggg aggggacttc cccttggaga
      241 ggggtgaggg gtgacctgta tgatggggat agatttggtg cttgggtcag tactagaagg
      301 gagcaatcta acaggagaca tagggttggt ctgcacttta ggaacagcca gctgtgggtt
      361 aaagccggca gcaggcgagc ggccctgagc gttctgcaca gggttgttct gggaagaggg
      421 ggcgctggca ttgctggcag ggagtgggtt ggatttagta gactggagtg gtttttcagc
      481 caatttgctc ttggatggca aagtctgcgt ctttgggttg ggctgaagtg ctggctttgg
      541 ttggagtaca tgtccaggcc tggaggcgtt cctacaagca tcagggtcca aggagacttg
      601 gggtcgggga gagaaaggga ggtcggaggt ctgagg
//
LOCUS       KCLJ01001304             513 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 145513cal ultra-conserved element locus
            uce-2841, sequence.
ACCESSION   KCLJ01001304
VERSION     KCLJ01001304.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 513)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 513)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..513
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="145513cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>513
                     /note="ultra-conserved element locus uce-2841"
BASE COUNT          157 a          118 c           99 g          139 t
ORIGIN      
        1 ggtgtgcaca agtggttttt atttagtatt gtatgaataa cagtttttat gcagaatcag
       61 attcagtacc tcaagcaagt ccagcagcct agtgttgccc aactgcgatc aacaatggta
      121 gacccagcca tcaacttgtt tttcctaaaa atgaaaggtg aactggaaca gactaaagac
      181 aaactggaac aagcccaaaa tgaactgagt gcctggaaat ttacgcctga taggtaaaca
      241 aaacaaatac tccccagtca agacttccct gacagtccca ctacgagaat gctatggtgg
      301 gacagccaag tactcgtttc cacaccaaga ctcagacgtt ttgaggcaaa agccacattc
      361 ttatactgtc cagcttgtaa tgcttaatgt aaaacttacc agatgaacct tgtgtttcag
      421 cttttttctc ccctttgctt cagaggcctg acaacgtcgg actattctga agaaatggcc
      481 atcttcgtct tttctagaac atgtagacat tgc
//
LOCUS       KCLJ01001305             453 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 145626cal ultra-conserved element locus
            uce-6968, sequence.
ACCESSION   KCLJ01001305
VERSION     KCLJ01001305.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 453)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 453)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..453
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="145626cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>453
                     /note="ultra-conserved element locus uce-6968"
BASE COUNT          140 a           86 c           88 g          139 t
ORIGIN      
        1 ttatcaccag ctttgccata aaacatccca ttttaataat caaattagag ccgaggcaaa
       61 cctgcacagg tgagaggaaa tgtgtgagcg tgatcaaaac cacatttctg attcaggacg
      121 gaatcgcagg ctacagggag gtacatctgt aaattataca ggaagctttc ttcaacaact
      181 gattcaccct gacagtttta ctggagtata tgaaaattag tattaaagat gtgatatgta
      241 ggcttctttc caggaattcc aatctggttt caataaaatg aaaacactga ttggaagtga
      301 agttgccttc cggttttgcc tttggctatt atgtgttcat tcgtgaaatg actgaattcc
      361 acaactactt ttaatattca ccttttgagt tcatctccag tactggacac attggaatga
      421 ttaaaatagc actgactcct gaagctggat tct
//
LOCUS       KCLJ01001306             563 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 145732cal ultra-conserved element locus
            uce-3007, sequence.
ACCESSION   KCLJ01001306
VERSION     KCLJ01001306.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 563)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 563)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..563
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="145732cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>563
                     /note="ultra-conserved element locus uce-3007"
BASE COUNT          142 a          122 c          114 g          185 t
ORIGIN      
        1 ggggtgggtg tgttgtcaga gccttgtgtg gattactgag aaagtgcctc cacttcagag
       61 aaatctggcc ttatggtttt gactggagca tcatctcttc cttaaaaagc tctgaccaaa
      121 ttattgagct gataaacgat ttcccttggt tttacatgtg ctggcatgaa ttatccttga
      181 gtgctgcata ttagggttgt tttgtactaa aaggtgttaa acacttgtaa taaatatttt
      241 tccttatttc ccctaggaca ctgttccatc tctggttggt gaagcataaa aaagagctgt
      301 catgcccagt tttaataggc aataggattt caagccccca gagttgtttc acagtctggc
      361 agtggccata atgaaactgg ccactgttgc cacaagactt tttcctctca tgcgttctcc
      421 cctgttacct cccacagctg cttgactggc aggtctcttg caaaccacaa acatatttac
      481 attggagcca gtagtatttc agctatctga gccatcttta ttttcctttg cctagataga
      541 gactcaacct taattttaaa gaa
//
LOCUS       KCLJ01001307             611 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 145841cal ultra-conserved element locus
            uce-7871, sequence.
ACCESSION   KCLJ01001307
VERSION     KCLJ01001307.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 611)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 611)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..611
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="145841cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>611
                     /note="ultra-conserved element locus uce-7871"
BASE COUNT          182 a          108 c          113 g          208 t
ORIGIN      
        1 ttgaaggaaa atgcctttaa cctggagaat gaatacagcc tgggtgattc agcagagtga
       61 aatttaattc aagaacccag taaggaaata gaaaaaaata aaataagtca caacctccag
      121 agaggagaaa gtgaactaaa ctaatcctat taaacatggt agcatgtttc tgtgcagctc
      181 gctgagagat taagcacagg aaaagggata agtgctgctt cagtttcact aaactaatgt
      241 gacaacttgt cattggaaat ctttacagct tgttagcaga tgactagctg attcagatat
      301 gttttctacc atttcctttg tgtctggggg tgatgttttt tctttcctgt tcctttctta
      361 tccatactgc tttattttgc tttttaatcc ttcatgtctc cttcaagtca aaacatttaa
      421 cttgctttaa tcaatatttt gttttgaaga tgtcccttga ccttttgttt gtgcaaatta
      481 accttcaagg gcaactcatt cattcattaa cctcagtggg atgccatatc ccttgtacat
      541 ggcattttag gatgcataaa acatttatga atgtttagac atattgcagt gaatgactgt
      601 gatactgctg t
//
LOCUS       KCLJ01001308             648 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 145947cal ultra-conserved element locus
            uce-3027, sequence.
ACCESSION   KCLJ01001308
VERSION     KCLJ01001308.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 648)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 648)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..648
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="145947cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>648
                     /note="ultra-conserved element locus uce-3027"
BASE COUNT          206 a          127 c          124 g          191 t
ORIGIN      
        1 tgcattacag gcaggaaact attcatgcct gggacgactg cattattagt cacagcactg
       61 tgacctctca ccccaagtga taaagtacac aggtcagaat tgacaataca tactcatggc
      121 tgatcatggc tgccagttat tgatcgaaag agaaaaaaag aaaactttgc aggaaaaaac
      181 attgctctga attacaaaca tgcattctcc tgagactcag caactctctg ggtttttccc
      241 actggagctg gaaagcaaaa agtgagttca gccagtattt aatatcaagt gaatgtggtg
      301 tttaatcaat actattctgc ttttgttcca cgatgtggaa agcagtgtct attcattcag
      361 taaaggttaa tgccaagggt caagtgattt cacactctct gtaggatcca caacatttca
      421 gtagttcaga tgccttggac aatgatgact cagttggact gatttattgc cacgctaagg
      481 tcctgcttaa tactgaagtg ctatcttatg ataatacctc agaaaatagc actgatgagg
      541 ctataattac ctacattttg aagtaatgtc ttcatctcta acatccgata aagatgtaat
      601 gtccatttaa aatgatatgc tccttgtatt agcaagtcag ttaaatca
//
LOCUS       KCLJ01001309             742 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 146057cal ultra-conserved element locus
            uce-1841, sequence.
ACCESSION   KCLJ01001309
VERSION     KCLJ01001309.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 742)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 742)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..742
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="146057cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>742
                     /note="ultra-conserved element locus uce-1841"
BASE COUNT          179 a          147 c          154 g          262 t
ORIGIN      
        1 tctgtggtac aagtagccat tattagctct agagtctgat gtcatactct tgtaacaacc
       61 ctactgaaac taatgaaaca ctgcagtgag tattgtgaca ccgttgagca gaggattttc
      121 agacctgcag atttatctcc cacgaacagc agtgaaatcc ttcagcagct cttggcactt
      181 ttgcttgttt gtatattctt catgtacaca tcatgtgcat ctgtgtgtgt ctgtgtgtac
      241 gtatatatga tatgtgtaaa agtacttttt atatagtaac tttctgcata gggcaaccca
      301 aacagctgtt attccttttt atagcttctt taatctatgt gccaacaagt cagtttacaa
      361 aatctgtttt gttgatgact gctgcgataa taattgtggt gttttgtggc ttggcaaaag
      421 cctggggtct cctccgagga ctcttgccaa agcctttgaa ggggttgagg tggattcact
      481 gccaaaatga gtcaccactc tctattttat ttagtgtcct tctgccaagg ccttagacac
      541 tttctgtttt cattcttttg taggctttcc ttcccacatt gtggtttcct tcacagccag
      601 agtaatgtgt ttgccagcat aggtgagaga gtgtggctga ctctccaaat gccactgcta
      661 gactctgctt aagggttagt ggtttagcta ttgtgctttc ttgaatgtgc aagatttaat
      721 tatatgccta tgaattataa at
//
LOCUS       KCLJ01001310             625 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 146170cal ultra-conserved element locus
            uce-3864, sequence.
ACCESSION   KCLJ01001310
VERSION     KCLJ01001310.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 625)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 625)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..625
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="146170cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>625
                     /note="ultra-conserved element locus uce-3864"
BASE COUNT          217 a           94 c           91 g          223 t
ORIGIN      
        1 ttatcctact ttggctatct aacaaataat taatttctag gagaaaagtg gatcattttt
       61 tcttcttatt agcacatgct ttgccctttg tcatggttta atttgaatac aactacaaat
      121 ttaaaagcat tttattttta ctgcagctaa ttaaatcaat gttgtatttg tggagctgct
      181 ttaaagtatt aaagtaactt gatcccaaat gaacttaaaa ttttaattca ttttacctta
      241 tgctggctgt ggaagaagtc aaatttttaa atgcaatatg acatatggct gttcattatt
      301 tatacattct gtagcagact ataaatttca ctttggacat atatcgaagc actgaaacca
      361 tttcagttgc aaacacataa atcatagtta cagttattag tctaaatgta atgccaccca
      421 ggttctagat caaaaccttt aaaatccatt ataattgacg tctgctgcat aacttatgtc
      481 tgattttatt aaaggagctc attattattt atatctttga aacattatat tcatagctgt
      541 gtaaccagtt aaatgtgaaa gatttcagga aaggaacaat agtctataaa ccagaaagaa
      601 taaggctata gcagaggaca aaatg
//
LOCUS       KCLJ01001311             532 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 146280cal ultra-conserved element locus
            uce-6231, sequence.
ACCESSION   KCLJ01001311
VERSION     KCLJ01001311.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 532)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 532)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..532
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="146280cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>532
                     /note="ultra-conserved element locus uce-6231"
BASE COUNT          149 a          125 c          110 g          148 t
ORIGIN      
        1 gagctgctct cctccccagg tacagataat tcccttcccc taattgccat ctcctggtca
       61 ttagctatgt gagctgttta ccccaaaaca cgtgcttcat cctaggagag ggttaatctc
      121 ccgctggatg caggatgccc tcatgggaat ggaatgtgta gtgttggtaa gtggttgtgc
      181 cccagaagcc tttgagagcc cactgactac tgcatgctaa cgattggtat tattaaagaa
      241 caattgatgg cctgtaacca aacaacagaa actaattact ggaaaacttt tattgtcctt
      301 taattactgg gcctctttgt caattagcag aagagagagg gagagggaca acaataaatt
      361 ttccaaaact acactcatca gtagctgcag aagcgagtct attaacacac aatattaagg
      421 cctgatattt actctggctg ctaaatggag gtgcttctct cctgaaaaag tgcagagctc
      481 taggaatact aatcactgct gctgcctagc tctcactcat tttacccctt ca
//
LOCUS       KCLJ01001312             925 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 146386cal ultra-conserved element locus
            uce-1683, sequence.
ACCESSION   KCLJ01001312
VERSION     KCLJ01001312.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 925)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 925)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..925
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="146386cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>925
                     /note="ultra-conserved element locus uce-1683"
BASE COUNT          247 a          164 c          162 g          352 t
ORIGIN      
        1 agacaaggga aggaagaatg aagaaaaaaa attccctcga tggatgccac aatagcatgt
       61 ctttcattat cgccctgtgt caaggcactg tgtaatgttc attgtgcatg catagtaaat
      121 tactatttac ctgccagtgc ctttgataag tcagtctttt ctccctcttt tcgtccacac
      181 agcatggaac agtgaaacct ctttgcctat aattcttatt aaggtgatac cttttctgaa
      241 taagaaagta cacacttcca aaggaggcat tctcttgggt ttttaagggc cattgttttt
      301 attgttttcc ttttatttct cccaccctgc tgtgttttaa tgctatagtg acttctgtgt
      361 atacaactct catattgaaa tgtctgccgc agatatatgc aatattaaag agtgcttatg
      421 aatttttgac atctaattag tcgctaccca gttaacatgt caagactcag agggattagg
      481 gagtcagccc tttctgaata agttaaagct atgccctgtc cttttcatgt attattcttt
      541 aatgtaggtg gtgattattt tgctgtgatt aattgatgaa gctcattggt ctggcaagtg
      601 ttacagaatt caccattcct cacttttatt tctctctgta gggctttccc gcttatttga
      661 aaggaattgg ttctattcgg tctgtgaagc ttcattgtct tttctcaata catgcacatt
      721 ggtttctctt aagattttat ctatttaatt ttatatcttt aaaggaagca gataattaat
      781 aatgcttgtt ttattttaag ttgcatgtta caaacagggt ttctctgatg tgttattttt
      841 atttttgatt tatactttta gacaaaatta ctgacatttt gaagtataaa aatagatttt
      901 cccccacatt caacaaggct tggtg
//
LOCUS       KCLJ01001313             457 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 146496cal ultra-conserved element locus
            uce-7614, sequence.
ACCESSION   KCLJ01001313
VERSION     KCLJ01001313.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 457)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 457)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..457
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="146496cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>457
                     /note="ultra-conserved element locus uce-7614"
BASE COUNT          150 a          103 c           55 g          149 t
ORIGIN      
        1 taaaattcac ttcacaagtg tctaagaacg gactgaatga acaagataat tacatctaag
       61 gtttaccaat ccatactatt taacacaacg ttcttccact cacactcact gcaaatcaag
      121 taacaaagca actcaatcca agggtagcat cacatgaaat aaagacgacc acaaggatca
      181 aattatttag ggactaaaaa gatatactta catctggata ttcttttaca ggcacatata
      241 gtttctcttg taactgtaca ataggtccca cagcatctgg taattctgca cttctcttct
      301 ccgtactacc atttaatgtg tcgttataca tgtctttccg tactctgcta atttctgtcg
      361 tatattaggc attaaataca gtaacagatt ataatctaac atgacaatct tctcttttca
      421 ttatttccca aatctcaatg ccattttctt cctcttt
//
LOCUS       KCLJ01001314             688 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 146607cal ultra-conserved element locus
            uce-2586, sequence.
ACCESSION   KCLJ01001314
VERSION     KCLJ01001314.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 688)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 688)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..688
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="146607cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>688
                     /note="ultra-conserved element locus uce-2586"
BASE COUNT          194 a          100 c          135 g          259 t
ORIGIN      
        1 attgaataac ttcaggtgat gcttatggtt cctaaaaatg caagtatcaa ctggtaagtt
       61 ttttgaaaat tgaatataaa atcatagaaa aatgctttat ttgattctct gtttatggga
      121 aattcatttt atttgacttt tttatttgta atatcaacta tattgcagag cagagtttct
      181 aggtgctccc ttatggtacc attcttctaa attattaatg ccgtactgtt gatatattgt
      241 cagccttgta catacattct atgaaaatga gttttacagt aggctgggat ttataacaaa
      301 gcttgacata tgcagctaat tcacctagac agtcttgtca gttttaggtt cataaataat
      361 tgatactcag ggcttggagt tcagctactg ttagtgctcc agctgttaaa tttcagcagc
      421 ataatggatg aatatttgtt tataatttct gtacatggac ctgatgtcag atccctggtc
      481 tcatttacat aggtagattg agatgttgga agtgtaatga gcatatgaag atgatgaatt
      541 gttttcctca gtgctggtgc gtttctgtaa atgtttgatt agttttgaat ggattactgt
      601 tagattatct ggttcagggg ttaaagtgag cagctctttg ctcccaaagc tttcgtgatc
      661 ccttgctgac agattttaaa attcatac
//
LOCUS       KCLJ01001315             474 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 146714cal ultra-conserved element locus
            uce-5426, sequence.
ACCESSION   KCLJ01001315
VERSION     KCLJ01001315.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 474)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 474)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..474
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="146714cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>474
                     /note="ultra-conserved element locus uce-5426"
BASE COUNT          133 a           75 c           95 g          171 t
ORIGIN      
        1 ggtttgtgtt aagtaaaagt taaatcacac tgcaagctgt aggaagactt gttctagaaa
       61 cacccagtga tagagacttg attaatgagg ttgaactgtt actgtttaac aatttgtaga
      121 cttttttttg ctttggattt ctctgctaca ctagttggcc atgtagcaat tgcactgtgc
      181 aatattacaa tatgaggact gggtttttta tggatgtaat gtctcttaca gtttgcgata
      241 gtatttcttt ctagttctca gtgatttaaa tgtgaccaag ccttctgtac tttgtcacaa
      301 aaagcgggtt ttccaggtga ctattttggt gagtgtcaaa ataagaattt atggtgtatt
      361 actgtcaaga ttcactttga attaaaatat atattgcagc agatgacttc tggtggcttt
      421 taaaaattca cattcatctg agattaccat cttcagtgca gccacacctc gaag
//
LOCUS       KCLJ01001316             383 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 146817cal ultra-conserved element locus
            uce-2371, sequence.
ACCESSION   KCLJ01001316
VERSION     KCLJ01001316.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 383)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 383)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..383
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="146817cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>383
                     /note="ultra-conserved element locus uce-2371"
BASE COUNT          136 a           73 c           64 g          110 t
ORIGIN      
        1 ttttcccaaa tacaaaatga cctgttagag catcccaggg agaatatgaa ttagcccagg
       61 tcaataggag gtcaaataga cagggtccta aaatcccttt actactttgt agtatcttat
      121 gctaattcag ttcccttctc tgtgataaac aaagccagtt gaaagtagat agcatcacac
      181 agtgatgggt cccaaagcta caatttaata caaatctagt aattccatta tacaacacat
      241 ccagttcatt tagaggcaac gaatacttaa gaaggtccag gattgaaatg cctcagctga
      301 tactttaaaa atataaataa tccagtaaaa tttcatttgt cactaaacct aatagtgtgt
      361 gtgatggaaa tggtcctttc aaa
//
LOCUS       KCLJ01001317             405 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 147020cal ultra-conserved element locus
            uce-629, sequence.
ACCESSION   KCLJ01001317
VERSION     KCLJ01001317.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 405)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 405)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..405
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="147020cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>405
                     /note="ultra-conserved element locus uce-629"
BASE COUNT          145 a           71 c           67 g          122 t
ORIGIN      
        1 ttgtaaccac agaggataaa cccagctttt atttttccct cttcaactaa agggcagctc
       61 ctttctcttt taatggcaac agcttgagag ggacaaagtt tgaatatcct tgtgccggag
      121 aaaagagcag agcgaaagcc ctgctaatta caaaagttgc tttatgaaag ataattcaaa
      181 gcaataattt agcaaacata atcaagtagc gcagatgggg attttgatga atagtttgca
      241 acatgcaatt agcagctctt gcagttacat atcattaacc ctcagagcac aaaaattatt
      301 ttctcattat tagatgaaaa ggtaaaatta agctgactag acagtaaagg aacaaactac
      361 aattaattac cttcatttat tacagtcatt attttaaact tattt
//
LOCUS       KCLJ01001318             538 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 147128cal ultra-conserved element locus
            uce-7982, sequence.
ACCESSION   KCLJ01001318
VERSION     KCLJ01001318.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 538)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 538)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..538
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="147128cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>538
                     /note="ultra-conserved element locus uce-7982"
BASE COUNT          178 a           95 c           99 g          166 t
ORIGIN      
        1 acccatataa agccatgtag atgcatatgc acagataaac tcccctcctc cttaaatgcc
       61 ttaaatcatt ctctgcagtt tccaaggaac cacactccag atgtggtatt taagagtgaa
      121 tgtggctaac gtttattaga cttgaactgt attgtgggta attgtccagt aataaccttt
      181 ggtaaattat atgaagcctt tactttactt aacagggaag gcaggctccc caaactctaa
      241 tattatcatc attcaagata atgagcaaca caaaccattc tattaccaat ctaaaagcaa
      301 taaatgtcaa agtaaagaac tatgcaatat tctggcctgg aagaacaaag gacaaaagta
      361 atgataatgc ctttttatat ttgcagtcta ttatatcatg cataacaaat gaccctgtaa
      421 ttgtgttatt tcaacaggtt gtaaagggaa aatgctgggg gtggaatgct gtagggctgg
      481 taaattggaa tgcctgatga tttatttgaa ttttatcctg ctggattatt ctgaagct
//
LOCUS       KCLJ01001319             651 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 147236cal ultra-conserved element locus
            uce-2875, sequence.
ACCESSION   KCLJ01001319
VERSION     KCLJ01001319.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 651)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 651)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..651
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="147236cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>651
                     /note="ultra-conserved element locus uce-2875"
BASE COUNT          221 a          114 c          108 g          208 t
ORIGIN      
        1 caaaacacaa aaagcagagc ctcaattatg tgcattttaa ctggttcttt gcatagtctt
       61 atacccaact atctttgcct gttttctatc ccctgttaaa aactgcgccg ccttaatgaa
      121 ataattttgt ctgatatttg catgatgaca atattcaaga caaaaattgc aagatgacaa
      181 aatcttaata tgcagtttgg taaagttcta gtcagtccct gaacaacatg tttatctatc
      241 cagtaaagct tgtgttaatg cgatgtaaga gtttggcaaa ttcaactcta atggagcata
      301 aaagtgcttt tgcttgaaag tgagatcatt tttaaaaatt caaagcatga tctcttttcc
      361 ctttttttgc aggaacaatc tgatacaagc agcaaagctt aaataaacta gaaacatttc
      421 aaatgatcca taaaggatta ataagcactg caggaagtcc tataggctca gagtatacat
      481 tttccatctt tttctcctgc gacaggcatg acgtgaaatt ctaaacagaa ctcaagtttc
      541 aaagtcactg aatgttaagg tctgcagctt tgataccagg gtagagtggg gtcaccatct
      601 tggaatattt aatttaaata gataacaaaa atattgattt tattagcata a
//
LOCUS       KCLJ01001320             513 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 147345cal ultra-conserved element locus
            uce-6920, sequence.
ACCESSION   KCLJ01001320
VERSION     KCLJ01001320.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 513)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 513)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..513
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="147345cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>513
                     /note="ultra-conserved element locus uce-6920"
BASE COUNT          173 a           81 c           83 g          176 t
ORIGIN      
        1 cagttttatc acgaatataa aatcacatta tctattaaaa gcataaattt gtgtcttgca
       61 gacttaaaac tgctggatac tgcaacaaaa atcatgtgtg tgttggtttt tattattaac
      121 tctagctttg aattagaatt ccctacatta cagcttggag ctaaactctg tttacaaaac
      181 agtatttaca cttgactaat tttgcagatc aaactaatta aatcaattaa actggtgatt
      241 aaccaaatga aggctgattg caaaaattag tgggtttatt ttggaggact ggaagtaagc
      301 taattactgc agtgattact tgaacctgga gtactctaaa tgtggtataa attgaaacct
      361 catagtgaat tagactggga attcattaca gtttaaagca ctgttaatac tattcaggct
      421 gctactcctg tgtgaaaatt tcactcagta ttttgtgtac tgataaacaa tcatttagtc
      481 tgtgtccttt taaataacac caagcaattt cac
//
LOCUS       KCLJ01001321             584 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 147456cal ultra-conserved element locus
            uce-3463, sequence.
ACCESSION   KCLJ01001321
VERSION     KCLJ01001321.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 584)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 584)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..584
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="147456cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>584
                     /note="ultra-conserved element locus uce-3463"
BASE COUNT          163 a          104 c          136 g          181 t
ORIGIN      
        1 tggaaggaaa tactcatgga aacacagcac aatttagatg ctgttcccca gggaagctgg
       61 gtgcccacag ggctccaatg gggtgagaaa tcctcctgtt tcctctgctt ctgctggagt
      121 gggccctttt cattccacac tggcagttcc ctgtgattga aatttgaaag catgtagctg
      181 ttaatctggg agtgattaaa gagcctcatt tcttggaaga gtcagtactc atcatctgcc
      241 gtgctgaatg agcctctaac atcccctgat cccattatat tgtgattaat tgtgccagtt
      301 taagtcaata attcatttgt taaaaatagg cctgcaaagt atcatttgtc tcaggggaga
      361 tatcagaata aaaaaaaaat tcatttgata cttctcatta aattagtgtt gggagttcta
      421 ttgaagggtt ctgttcatga aacatttatt gcaggcttat ttgataagaa gttgtatttg
      481 tctagaatta tgcctgctaa cagatgtaag ggcctgcttg ttaatgaaag gatcagtaaa
      541 caagtgcgtg actgggggtc tgtgctgaca ggaacagaga tttg
//
LOCUS       KCLJ01001322             387 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 147561cal ultra-conserved element locus
            uce-5130, sequence.
ACCESSION   KCLJ01001322
VERSION     KCLJ01001322.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 387)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 387)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..387
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="147561cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>387
                     /note="ultra-conserved element locus uce-5130"
BASE COUNT           77 a          125 c           44 g          141 t
ORIGIN      
        1 ccccagctgc ctctgcacag ccacagcgcc tgtttcaaga gcccccaacc tttaataatg
       61 gtttctgctg ctatctgaac acttcctaat tcatcccctt ctgtccctga aaatctaaat
      121 cctatttaag ttaatgccct tcattttcat ttataaagac agatacaaaa taattatttc
      181 ctatctctgc tgtttcctta tcttctgtcc taataattcc tcactgtctc cctttcatca
      241 tctgtctgcc gtacaagaaa cttttctgtt agttaaaata ttctgtgtgt tcttttcctc
      301 ctctttcata tctcgctgct cctgccccgg ctcccccctc cccagcctgc ccctgctttt
      361 catgctcacc cttcctgttt gcatttc
//
LOCUS       KCLJ01001323             624 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 147668cal ultra-conserved element locus
            uce-7210, sequence.
ACCESSION   KCLJ01001323
VERSION     KCLJ01001323.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 624)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 624)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..624
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="147668cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>624
                     /note="ultra-conserved element locus uce-7210"
BASE COUNT          190 a          104 c          126 g          204 t
ORIGIN      
        1 gcagcaggaa cacgtcaaaa gctgcagcat aaccctgaaa attgtccttt gtggaagaaa
       61 attagcaaag gcctgaactg tgggatctct ctatttttgg ctcaagagag aaattctgaa
      121 gctgctgatg atttgaaatg ggtcctgaag agaaggaagg aaggtttttt tttaacttac
      181 aaaattgtct tgcctgtgta ataacactga gcatgactgt cactccgaag acatattagc
      241 tcatttaggt aattagtgtg agcagcatgt ttccctgctt attccattca attatagggt
      301 gctcactttg tcattactgg agtatcttaa tgtgacttgt aattagtgta attacaatcc
      361 aatgttaatt atatctgcca cttagacata attttatata gtaatggtct tattctcaat
      421 aaccttatta tgttgtttat tcaaacagga atttagcctt ctttcatgcg tcaaatatgg
      481 agattacgta ctgcctgtca tttttgtagt tatgactcgg ggagcttaaa atcatatttg
      541 gggcaatcaa tgaatggagc aaaccaaatt ataggcttag agacatgctg aactcacaga
      601 aatgatttgc acaggaggca catt
//
LOCUS       KCLJ01001324             486 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 147775cal ultra-conserved element locus
            uce-4947, sequence.
ACCESSION   KCLJ01001324
VERSION     KCLJ01001324.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 486)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 486)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..486
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="147775cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>486
                     /note="ultra-conserved element locus uce-4947"
BASE COUNT          150 a           89 c           72 g          175 t
ORIGIN      
        1 aaaagggatt tatttttgta tagatttcaa tcttgtctga aaatgcaatc ttcatcatct
       61 cagtgacaca agttatactc aaacatttag aaacctgcct ccattacctt tcctcctgtc
      121 attacttcat ttaatttcat ttttttcaac agtttttgaa tgtttcagat agcaatattt
      181 cattctggaa taaaagctaa tgatccataa atacttaatg ccatattttt atggccagta
      241 aattagtctt aaatgagttc agtaagttct ctgacacatg tcattaattg ctaatggtgt
      301 tttaactaga taattgttgt aaaaggctct ttatcatcac cctttgactg ttcttgcaat
      361 ctgtcccgcc tggtgctgaa ctttgtcttg tgtacagcaa agagatcagg ggactgtgaa
      421 gcataattta aatatcaaat tcaaacacat ctagtggaca atgaacctac agatcatcag
      481 acttag
//
LOCUS       KCLJ01001325             483 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 147877cal ultra-conserved element locus
            uce-5147, sequence.
ACCESSION   KCLJ01001325
VERSION     KCLJ01001325.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 483)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 483)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..483
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="147877cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>483
                     /note="ultra-conserved element locus uce-5147"
BASE COUNT          160 a          106 c          121 g           96 t
ORIGIN      
        1 aaaaatgagg tttaggtgct gagctgttac aaagaggagt tcactcggca tgtggacagt
       61 gttaaaactt tttaatgcgg atgctagtgc agaacccggg ggttaaagag acgcagagct
      121 cccacatgca ggagaaggag gttgcacagc agcccgctcg cccagcaccg cggggacagg
      181 catagcaacc acaagcccaa aagcagaaaa gcgcatacct tcagcttgga atgaaaatca
      241 cgagatttcc ttctggcaag aacctgaatg tgactagaca cctgcagggt aggggaaggg
      301 aggaaacaaa ggaaaagcct gtaaccatgg agatgaaaag ccccctacaa ctgggcaagc
      361 caaacgtacc ttaatggcgg cttgaatttc tcgaactttc tttcttgcta agacctgtat
      421 gtgactagac acctacattg ttcaggttta tacaacaaac aaaagaaaaa gcaaatcaaa
      481 ttt
//
LOCUS       KCLJ01001326             731 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 147983cal ultra-conserved element locus
            uce-4098, sequence.
ACCESSION   KCLJ01001326
VERSION     KCLJ01001326.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 731)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 731)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..731
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="147983cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>731
                     /note="ultra-conserved element locus uce-4098"
BASE COUNT          217 a          135 c          120 g          259 t
ORIGIN      
        1 aacaacaaaa ttttaagaac aacctactgc ttcttactct gtataaggaa gatccttgtt
       61 gattccactt tttaggcttc taagagctgt aaggaccaac aattctataa atatgtgtag
      121 gtacttatat catgcatacc agaataacta cattccttaa gttatctcaa caacttaaat
      181 gccacatcta tctttggctt cattacattg ttgcaccaca agaaaactat agctggcatg
      241 tgaattactt tgcttctctc tctctctatt ctcctaggcc tagtagatgc tgcaatcgat
      301 gcagcttccc aagcaggtgt gtttgtatgt tgcatggcca atctgtaact gggtggaaga
      361 ctgacacata ctgacactgt taatcaggat tattgggctt ttggcttact gatgttactt
      421 gtcattctta ctggcctgca gctttgatgt tgtatttcat actcagttct acattttgct
      481 aacatttctt ataatttcta aacataataa gcaaattcat caataaccat catcttattc
      541 acctatgaat tacagttact tagatggtat ttgagagttt ttgtagtatt tccaaataca
      601 gctgagtcat tcacttgata attaaacatc ctattgtatt gatatataat ggttacctag
      661 aaatgagaat tggttaaata cgatgtaaga tgatggtgcc tgaaggatct ttcttctgta
      721 gtgaaagtaa a
//
LOCUS       KCLJ01001327             572 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 148205cal ultra-conserved element locus
            uce-5704, sequence.
ACCESSION   KCLJ01001327
VERSION     KCLJ01001327.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 572)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 572)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..572
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="148205cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>572
                     /note="ultra-conserved element locus uce-5704"
BASE COUNT          154 a          108 c          101 g          209 t
ORIGIN      
        1 ttttgctgtt tcccttattt acatatcaca taaagttact ttttagattg atcttttcag
       61 aaatctgccc aggctaggtg tcattaaaag ttatttcttt aaaggtttgt gcttggatag
      121 ggcatttacc tgcctcactg ctgatattct aaaaatacct ccatgtccat actattatcc
      181 attcttcacg tccaattgct ctgttatggt aatagtcaga agcacaccat gtagtaatta
      241 cttacagctg acttaagaaa agaatattca actcccccac tgttccacta gaaggtcttt
      301 atgcgctatt aactcattcc tgtttattaa tactctactg gtaattctgg ctgctgcttt
      361 ttaggtttgt aataggagga ctattaaaca gcaattattg accatatggg ttagtggata
      421 tttgtggtgg ttgttgggtg gttggtttta atgtttgtat ttttaaggag ccacatcaca
      481 atatagtggt gcaactttac atctgcctgg gattaacaac tttggcagtg ttccccacct
      541 agaaaatgca aattccatac ttcagaaata tc
//
LOCUS       KCLJ01001328             555 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 148314cal ultra-conserved element locus
            uce-5289, sequence.
ACCESSION   KCLJ01001328
VERSION     KCLJ01001328.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 555)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 555)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..555
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="148314cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>555
                     /note="ultra-conserved element locus uce-5289"
BASE COUNT          187 a          101 c          116 g          151 t
ORIGIN      
        1 atcaaggaaa acatttctaa aaactgtttg gcctggtgta ttggtgttag ttcatattac
       61 tgttacttca gaaaatttgg gatattctgt tcaaaactat ttccttggtc aagtgaagat
      121 atcaaccaga caaaattagt atctaattac ataccttgct atgtgcataa actacagaac
      181 ctaacaattt ccaagtgcct cctcttcggt ccatgcgcac catacgaagg atctgtagga
      241 aacgaagact tctcagtgct gatgttgcaa aaatgttacc ttgagttttt gcagaaacaa
      301 ctgctattga agcgatgaga acaatgatgt ctgaaagaaa tacattacag aaagcattaa
      361 ttgtcagtaa aaagtacaca catctacatg agctgaatga gaaggacaag tgggtgggaa
      421 tccaaaacac agagattcct ctttgagcag ggatgtgaga tcagagctgg tgtcaaaagc
      481 tacctcagga gtctccagga gcagtcttga agaaacctca tgtaggagct ttgaaacctg
      541 atgtagcaaa ctgta
//
LOCUS       KCLJ01001329             457 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 148422cal ultra-conserved element locus
            uce-4845, sequence.
ACCESSION   KCLJ01001329
VERSION     KCLJ01001329.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 457)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 457)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..457
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="148422cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>457
                     /note="ultra-conserved element locus uce-4845"
BASE COUNT          132 a           80 c           70 g          175 t
ORIGIN      
        1 ttagtagtta cttctataaa caattacatc catgtaaaaa gctttatgat tttattttca
       61 tcattgacag gctgagctgt gtagctgtca tactttgcag tcttccctcc agtgacaacc
      121 acactgacaa catgttatac tccacattga ttttacagtt aaggagctga ttgtgatata
      181 tagggatttt aagaattcag ctgagaggat gacttttgcc ttttatcatt ccattaaaat
      241 tttataacca tctttttcat gtcatttcat ccatgaattc ttactttaga aagtgatagc
      301 tactgctgcg agcataactt ttttcatgtt cagagctttt tattgtatta gcaaactatc
      361 ccaattatag ttaatactca tgttttacat aattgtggtg accctttcaa ccaagcagta
      421 ttgtgctagt tgatttgtac atagaattag atgattc
//
LOCUS       KCLJ01001330             697 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 148531cal ultra-conserved element locus
            uce-3430, sequence.
ACCESSION   KCLJ01001330
VERSION     KCLJ01001330.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 697)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 697)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..697
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="148531cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>697
                     /note="ultra-conserved element locus uce-3430"
BASE COUNT          203 a          149 c          115 g          230 t
ORIGIN      
        1 atgaatgggg tttgctcatt ttagtttatt atcttcatct gtttctctcc actaaagaag
       61 agagaaaagt cccactcatg ctcctgccct cccctcacag agaaagtggc aattgtacca
      121 ttaagcctgg agtgctttac atatgcaaac acaaacacag tgcagatctt tcctatccat
      181 atgttcatct cctttccttt acctaaacca gacgattacc tcagcaactc agctgtgtta
      241 ttgagacatt tcagcgtgaa atttgttttt cctcactgaa ctttaagcgg aatttcaagt
      301 gccaagtctc caaagccaag tggggctatt aagagataat tactaattat gctaatttga
      361 gaagttatgc tatttctttc cctggtcatt ttatctgcag ctctcctgag agaacagtcc
      421 ccattcaatg ttaataacct ttccaggcta agcattcaat ggaggacagt gtgtcctaaa
      481 cccaggaata ttttacagtt gatctagata tgtgcctgta aattagaaag agaagcaagt
      541 tgcactaatg ctaatgactt acgttattaa ttttttagca gaaatatctg attcctctcc
      601 attcatatat tgatatagct gatggtttta gagtcctcga tgatgaaata ttcagaattc
      661 caacaatatt tctcagtgat cattttctaa ccctacc
//
LOCUS       KCLJ01001331             620 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 148641cal ultra-conserved element locus
            uce-5955, sequence.
ACCESSION   KCLJ01001331
VERSION     KCLJ01001331.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 620)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 620)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..620
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="148641cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>620
                     /note="ultra-conserved element locus uce-5955"
BASE COUNT          197 a          121 c           80 g          222 t
ORIGIN      
        1 tttaacatga attttaaaag acttaacaac ttcaatttac attaattgtt gaagcttcaa
       61 actgaaattg gcaagatctg cttcttagca ttgcacccaa acaaaatgtc ggtgtcgata
      121 aaatccactt ttaaaatcct tgcaaatctt aagtactgtc atctcatcac cctgttggag
      181 tttgattgat tacgcctttt ccttatgttc attaatctca tcaccttatc ttttacacca
      241 cttcatttta gcagaaaggc aataataaaa ccctcatcca ttatcctttt acacatctag
      301 tcaagcggaa atggttaata acatgctaca aattgaactt caatcacctc attttctcct
      361 ttgtcgaatg cacattaaag tatattccaa aagtgcaatt tgttttacag gggaatttgt
      421 gttatattgc tacagacaac taaaattaag tgtttctcag tttggttatt aaatatatcc
      481 aactgtcctt ttatctctga tactaaaata ttaactcatt ttattagggt gtaataatac
      541 aagagcctta tctcccagaa cacagggaca tctagtctgc ctaatagtaa gtgttataca
      601 atgggtcatt tatctttttc
//
LOCUS       KCLJ01001332             555 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 148753cal ultra-conserved element locus
            uce-7415, sequence.
ACCESSION   KCLJ01001332
VERSION     KCLJ01001332.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 555)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 555)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..555
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="148753cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>555
                     /note="ultra-conserved element locus uce-7415"
BASE COUNT          187 a           87 c          113 g          168 t
ORIGIN      
        1 tttttttttt aaggtttcta cttaaagttc tgtgccaaag ctacagtact tatacatttt
       61 ctaaatgtgt tttaagcaat aagttgtaca acatttttag aacatgtgtt aagctatttc
      121 tctaagaatg aagctcttaa caaaacataa gcactctgca tgagatctta gcagcaaagt
      181 gcttaaaaga taaagtaaga attggtacca tgggaagaac accagctgta gagcacacag
      241 gtccattatg agaagtatgg tagtgggtag ggagaaaatg atttaatcag gagtaaaacc
      301 aattttatta taagggcacg cagggggtgt ggcaccatag tgagagggac atttcaaaat
      361 atctgacaga tttcaacaat gtgaaaaccc accctgttct ttaaagtgac agtaaacccc
      421 atcaggtctc tctttttgat gctattgtta acagttgact gtttaaagct ggcctgctaa
      481 gatgctgtcg atctagttca atagtgtgtg gcaaaataaa aggctaattg ttgaaatacg
      541 atcaatcaaa tatga
//
LOCUS       KCLJ01001333             760 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 148861cal ultra-conserved element locus
            uce-6138, sequence.
ACCESSION   KCLJ01001333
VERSION     KCLJ01001333.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 760)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 760)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..760
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="148861cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>760
                     /note="ultra-conserved element locus uce-6138"
BASE COUNT          189 a          194 c          166 g          211 t
ORIGIN      
        1 tcctcctcct ccttttcctc actccttttt tctttcctgg ggcaaccatc ctgctagcca
       61 tttcttctgt gaagaaggca ttccatctgt tgttggatgc gtcccagaca cctgaattga
      121 taaaacaagc tgccccagga tgcagagggc ttcatttcgg atcataagaa aggttatctt
      181 tcttctacaa tggggtcaat ctgggtggcg ggggggaaac ccaaacaaac ccacctgtgc
      241 caagactgct cctgcctgtg aaaagcgtgc ttgcatccac tggaaagaaa aggctggagc
      301 cccgctgcgg gctgtttgta tgattgtttc tttccacagc tgtgtttttt tgaactgctc
      361 ttcctgtgtt ctgttataga atagtcttac aggaaccaat cattagcgct aaaatacctc
      421 aggtaggagt gccagtgtga cctgccaacc aatcagattg tggattgcag tggaaaaaac
      481 tgaattatac taaccattcc agcaccacat tagagatggg aacagaggct tttttagagc
      541 agcgcagact cacgtgtgag ccaagccccc gctgcagcag ggtggcgtgt gtccagattt
      601 cataccaagt ggcatttcac tcaaaataaa aaccaacttt aattcagaac aaggtcatgc
      661 ttgtcccatt accatgtaga agcacctgct gcaatggaca ctgttgtcct gtcacctctt
      721 ctaattcatt catgctcatt cctggtgcac gtatgccacc
//
LOCUS       KCLJ01001334             753 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 148971cal ultra-conserved element locus
            uce-1014, sequence.
ACCESSION   KCLJ01001334
VERSION     KCLJ01001334.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 753)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 753)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..753
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="148971cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>753
                     /note="ultra-conserved element locus uce-1014"
BASE COUNT          245 a          133 c          135 g          240 t
ORIGIN      
        1 aaatgctaga ggaaaatact gttctactca tatttttatt tgagttcatc agccactagc
       61 cttttataac ttatttggtt gttttagaaa atttcttcac tgcattaacc acattttctt
      121 tagaataaga tcaacaccct aggctaaatt taaatctcag gaaaagtaaa agaatcttta
      181 atttatgaaa ctgaacaagt agacttatct aaacatctct agggctttaa tgggggatat
      241 ctataattct ctgaattgta ttcctttcac agtgatattt tgtaattcca ttctattacc
      301 cttgcttaac attaatgaga taaaaagatc acattatggc gattgatgtt cttcaaatta
      361 aatgcacgtt tccatgtaca aagctgtctg ctaatttaaa aaacatagca tgtaacatag
      421 aatcatgacc atggtcatca ctcagctggg atcagatagc attttttatc tattcattgg
      481 atttaacaag gcatgagatg gaagcagaat acaaagtgtg ggtagattat cccatattcc
      541 cccttttggc cacttcttgg caatctcagc aaggaaactg aggcttcatg ttgccatgga
      601 aataaacctc aaggtcaaag gggcatatgg aaggtcaggc aatgacaaag gaacatctga
      661 gaggccatct ggatgagtga cctgacataa ttagtcatta atcccactct tgggaacaat
      721 agagttagcc gagaatgtgt ttggactttg atc
//
LOCUS       KCLJ01001335             366 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 149076cal ultra-conserved element locus
            uce-4118, sequence.
ACCESSION   KCLJ01001335
VERSION     KCLJ01001335.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 366)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 366)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..366
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="149076cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>366
                     /note="ultra-conserved element locus uce-4118"
BASE COUNT          112 a           69 c           83 g          102 t
ORIGIN      
        1 atccggtcgc cgactttcag cttcccgcag cggtcggcgg ggctcccttc aattatccga
       61 cctattttgt gaggcatggc cacacatgca tttcccgctt ttgtatcggt tgtttacgta
      121 tgtgggaata tggtgaaggg gaaaaggaaa aaaagggttg aaaagggaaa gagaaggtta
      181 agggttaatt aattaatgca tcaagcaaaa gttattatag gatagctttg ctgccagtgt
      241 tcaaaacatt ggcaatcaac tagttgagtg cacaaacctc ttccacgaaa attttgttaa
      301 accctcaagt ggatttctgt taataaatgg tttagcagct ccatcataac ccaaataaaa
      361 aaattg
//
LOCUS       KCLJ01001336             650 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 149178cal ultra-conserved element locus
            uce-7016, sequence.
ACCESSION   KCLJ01001336
VERSION     KCLJ01001336.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 650)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 650)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..650
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="149178cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>650
                     /note="ultra-conserved element locus uce-7016"
BASE COUNT          209 a          118 c          109 g          214 t
ORIGIN      
        1 tttatattca acaaatttaa tggccttaaa actttaaatc accaataatt tgtcagttaa
       61 tcacctttta gtagaagtta agcaatgaat ggagtttaag cagtagaaag cacaaacatg
      121 tagctacatt aattcaccac agagaagagt aatgcagtta atatccatct accatttggc
      181 ctctctgcct agcattctca tggagatgat aaaaaaaatg attgagcatt caggattttt
      241 tttactatta cattcaaata gatttttgtt gattgattac taaaatcatt atgaattctg
      301 tttttaccta gaagaatctt tgctattact tgtatttggc ccttttaaaa gcgcagactg
      361 aacaagacca gttaaactgg caatctgttt ctccatggct tgtatcctct ctctgtaaga
      421 caagagaacc gtttgttaaa gccagatata tttgctttca gacttgttag gtgaatgatt
      481 accacaggat tggaaagaca ctacagagtt tgtgcaaagg cccttgggta cagtttgcat
      541 ataccttatt gcagcagctt accacatctc agtttggaca gctttcacaa gacaggcacc
      601 taaaacaatt tgttaatgcc acttggaact agtgattttc agcattacat
//
LOCUS       KCLJ01001337             415 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 149286cal ultra-conserved element locus
            uce-5226, sequence.
ACCESSION   KCLJ01001337
VERSION     KCLJ01001337.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 415)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 415)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..415
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="149286cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>415
                     /note="ultra-conserved element locus uce-5226"
BASE COUNT          148 a           65 c           73 g          129 t
ORIGIN      
        1 aaaactggaa taaacccaac ataaatgctt actattggtg aatataaggg catagaaaac
       61 agggcagtaa agtcactata caatatcagt aaaaccatta aaaaaatctg gaaaagcatc
      121 aagatggctg gcctctttgt agtttcagca cagttgagcc ttatttctaa atattttccc
      181 tagtgggaaa taacagcttg aaaataatcc cagatgtatt catttgtgca acatttttct
      241 gcttgcaaca tataggcatg gaaaaattat tgaaggtttc aattctggac ttgtatttta
      301 aaaatgtcaa gcttttgaaa aacagcataa tttttcctta aaagctattc atttacctgg
      361 aatgttggcc agcaggcgta cattatggac ttggtttagc taagattgaa aaatt
//
LOCUS       KCLJ01001338             598 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 149389cal ultra-conserved element locus
            uce-6762, sequence.
ACCESSION   KCLJ01001338
VERSION     KCLJ01001338.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 598)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 598)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..598
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="149389cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>598
                     /note="ultra-conserved element locus uce-6762"
BASE COUNT          152 a          126 c          123 g          197 t
ORIGIN      
        1 aattattgaa acactgtatt gctagagtga aaatgatctg ttctctccta cctcttaaaa
       61 agagactttt ttttatgtgc ctttaaagtt actagttgtt atggacacct gaggagttca
      121 tgggtttctg tgacctttta ctgtggacct gtttccagtc aattcatgtt ttcctcatag
      181 ccagacagct gtttattatc gtgtcttctc gcattctcta caatattttc tactgagacc
      241 tcgagcagct tgttagtggg aagtaaatat tgatttggca tcctgtcaat gcagaaagaa
      301 tgaaaaaatt tccaccagag gcccctcaaa cattttccta tcgacatttt ctgggcagag
      361 aggaaagctg catagaggat gacaagtctg agactagcag aaatccctga ggggtccatt
      421 gagactgctg ctgtgacctg tgtgatactt tttcttctct ttcaagtctt taatacacac
      481 agagtctgct gggatgctcc cctcttgtaa gtgatcaagg gcagtttatt ggcaggtgag
      541 agcccagctt ttctacccat agtcagcttt tgtttggaca tcactgacaa cataccct
//
LOCUS       KCLJ01001339             683 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 149499cal ultra-conserved element locus
            uce-175, sequence.
ACCESSION   KCLJ01001339
VERSION     KCLJ01001339.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 683)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 683)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..683
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="149499cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>683
                     /note="ultra-conserved element locus uce-175"
BASE COUNT          222 a          133 c          116 g          212 t
ORIGIN      
        1 gaaattaaat gattcattag gcctaatgaa caatactgat catatcttct ctaaaatgca
       61 gtcagctgac attgatatat acatagttta actcgttctt cccaacttta ttaggtacat
      121 atgtctacag cagacacaaa tggaacattc tacaactagg ctccaagcca aaaactaatt
      181 tattctttaa tgtgctagtg attacttggt ggttccttga gcagagatga caggtctgag
      241 ctaatggagt tgtaccgtaa gttaatataa atcatgacag agcaattaat tacagaaacc
      301 actgtaaatc cctttgttag ttttccccat caccagaagg atttaataat gttcattttg
      361 ctaagttcca gtgacattta caagtcttaa aacattttta atcaaatcaa tatctctggc
      421 tgctaaattt agttgtgctt tgctagcaag tgctggaatg catggctggt aatgtttcct
      481 accttctgtt caagtaaatg gtgctggagc cccacacttc ctctgcagct cttacaatga
      541 gtttttctta atgagcagca taagaagtga gtgcatccaa aggaatttga gcgagacaga
      601 tataaaaata ccagcgctta tgatgcatct caaatttaac caaatttccc ctaattagca
      661 gaaaactctg caaaccaaag gac
//
LOCUS       KCLJ01001340             664 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 149608cal ultra-conserved element locus
            uce-7453, sequence.
ACCESSION   KCLJ01001340
VERSION     KCLJ01001340.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 664)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 664)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..664
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="149608cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>664
                     /note="ultra-conserved element locus uce-7453"
BASE COUNT          212 a          130 c          159 g          163 t
ORIGIN      
        1 gatctaataa cagataaaca ggtacacagc aaactttcat ttaatttatg gatggagcaa
       61 gacgagatct ctttacaaca tgaggcttga aggaacattc cacagaaatg ggcacatgca
      121 gcggagtgag ttttggtgcc aagcacacca atggaactga ggttataaac agctttaaca
      181 caggttcatg agcagagaag gaagaaaagg agccaaagag aaaaagacag aatatggtga
      241 ctgggaacat ctgacctgtt agctggtcgt cgcctgcagc aggggcgatg cgaatgtatg
      301 gtgttgtaag ctgagtcacg attatcgcag ctaaggcaaa ggaagaggtc caggtcagca
      361 tgcatgaggg aaaaaaaagc cagactgaag ctacgccagc aagaagaatc ttggtcagtc
      421 gtttattgtc tgaacttcac agatgaaaac caaactccca caagttcctt ttcatcttta
      481 gtagttagtg cggttattct gcaatagtaa gctgtggctt caggaaaagg actcactgca
      541 tttgagcaaa ctggagactc ttcggctctg ccagtcacag cactaagctt cctaagtgaa
      601 aacagctgat tattgagtac tctatcagct tctccaattt gagctagttt caattttcct
      661 attt
//
LOCUS       KCLJ01001341             467 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 149718cal ultra-conserved element locus
            uce-1050, sequence.
ACCESSION   KCLJ01001341
VERSION     KCLJ01001341.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 467)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 467)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..467
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="149718cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>467
                     /note="ultra-conserved element locus uce-1050"
BASE COUNT          156 a           78 c           96 g          137 t
ORIGIN      
        1 tttactacac atttatattg cagagtaagc aataaattat tatttcaata tttattggaa
       61 tctcagaata agaaagaaga cagattacgc aaatccatct tagttgatta atgggtactc
      121 cagcaaaagg catacactga tggagtgggt cagtatgcag actatattac tgaatatttc
      181 agctcagttg taaatatagt atctgtttct cttagggact gtcacactga gtgcagtata
      241 aaaggcaata aatttcaaca gattaattaa ctctttggtt actggggctg tgtgtcacct
      301 atcctggcac ctaataaaaa atcctttaat gccaagacat aaagaagggc ctctttgaaa
      361 atgagttatt aacagcattt cgtgaataga tggagaaatt gtagcccagc catttaagtg
      421 tcataaagtg cagcaaaggc tgctggaggc ctctgaggga cgccagg
//
LOCUS       KCLJ01001342             512 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 149828cal ultra-conserved element locus
            uce-366, sequence.
ACCESSION   KCLJ01001342
VERSION     KCLJ01001342.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 512)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 512)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..512
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="149828cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>512
                     /note="ultra-conserved element locus uce-366"
BASE COUNT          145 a           96 c          101 g          170 t
ORIGIN      
        1 aagtcttacc aagtcaaatt ctttaatttc tcctcctgcc atttattaag ttctcctttt
       61 aatagcccat gtgtatgtgc aagtttgact tcaggtgcac agtcctgaaa tcttaatatg
      121 caactttttt ataaacaata caaagaagtt gacaggtctc aaaggggctt gcgtgaaaag
      181 ataattaagt gctttagaga gtgtcaagag tcaatagctc agcactgtca gcattctcga
      241 gtgttacagg ctataattag atggcatgga ggtgtaagag atgtttggca gtttattcca
      301 gcatgatctt gagagtaaag agctgcctcg acactatgag tgaggagagc aggaacatta
      361 aaacctcaca ctcttttagt gacttagaca gattgctcct ttgtggagat gccactctgc
      421 aatattttca tccatctatc ttatgcgcca aatttcaatt gtgaggtcac tggtactttt
      481 gctttttgtt cttgacttac taaattactt ca
//
LOCUS       KCLJ01001343             594 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 149940cal ultra-conserved element locus
            uce-1540, sequence.
ACCESSION   KCLJ01001343
VERSION     KCLJ01001343.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 594)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 594)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..594
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="149940cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>594
                     /note="ultra-conserved element locus uce-1540"
BASE COUNT          193 a          132 c           96 g          173 t
ORIGIN      
        1 gtgacaaaat gttaaaaata aaccttcatg tgtgaccaca aagagtctgt tacctttaaa
       61 cagagggaac atctgtctgt cttccacaaa caacacaagg atgtagacgt tacagaaata
      121 cagttgcatt tcacctggca gtttgatgca gcgtacttgc acatgacaac acattgattt
      181 tacttctacc tccatgcaga catctacgta aagaaatcca ttaggcagac agttctcatc
      241 tctattgact gacagagtga caatcgaata cttttcacct tccaaactga ctgacagcta
      301 gacacttaaa caagccttca agttgcaata atagtatgaa acactttcaa ttacctgaat
      361 caaacaaatc catgatccca ctagttgaat gtatttttct gtctgctgct atgcctggct
      421 tggtttacac tgttgtttgg gcaagtcaga atgctgcaag caaacagcag cccagggttt
      481 ctaaacaatg aattatacct catgtagtac acatctttat aaatgcagcc agcctttgga
      541 attactttct ttttaaccta gcaatgaagc aaatctctta aaccatcatt agat
//
LOCUS       KCLJ01001344             664 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 150049cal ultra-conserved element locus
            uce-5521, sequence.
ACCESSION   KCLJ01001344
VERSION     KCLJ01001344.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 664)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 664)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..664
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="150049cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>664
                     /note="ultra-conserved element locus uce-5521"
BASE COUNT          218 a          134 c          133 g          179 t
ORIGIN      
        1 atgcaggtgt gcaaaaagga caacatcccc agcacctcaa tttcaagttc agctacaaaa
       61 aactcaaact cctaacagtg atttaaaaag caaccaccaa accaaaaagt gttcagcttt
      121 tgcaagaaat ctagaggaaa agaaaagagc agaatctttc cttccaaggg aggattgcga
      181 attgtctccc aactgcactc ctgagcgtga atcaattttc ttccagtcga taactagcgc
      241 aaaggttcta accttcattt gtgctccaaa tactcaatcg gggatgtaga acacatacca
      301 attaagcaat tcagctaaaa taagaaggcc gtgaaccaac atcgttgctg cagctgcccc
      361 tgagggatcg agggttagca gcttggggaa aaggtaattt attgagctta atactctgcg
      421 aaatgttctc atgataataa gattgtaaga tcgttttaat atctgaagtc atgttgaaaa
      481 ggtcatttct cactttttac gcctacctaa gtcatgtaaa ttagagctac tcaaacagag
      541 ttgaggatgt ttgcagccta agtttttctt ttggatgaca gagaatgtca gtaatcccat
      601 gtggtggacc catgagtttt agaacagtaa cagtaataga gctgtgcata catctttgac
      661 ctag
//
LOCUS       KCLJ01001345             692 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 150158cal ultra-conserved element locus
            uce-2293, sequence.
ACCESSION   KCLJ01001345
VERSION     KCLJ01001345.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 692)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 692)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..692
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="150158cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>692
                     /note="ultra-conserved element locus uce-2293"
BASE COUNT          224 a          128 c          142 g          198 t
ORIGIN      
        1 atcagggtag ttccctactt ctaagtacag ctaaggagat caatataggg atggcgtcca
       61 aaccttgaat atatatgaat tactatttga aaggctaact tttattttct aaattagcac
      121 agtaaaggct atggaagagt attttaggaa attatttatg aaatgtagat gggccttcaa
      181 ttgggaatag ggctgggcaa aatgttagtg gttctttgtt cttgcagctg gcctgtcgaa
      241 ttacacagag ccagcacagt aaataatact actattgtct gcctgtgtca gagacagaca
      301 gaaggtacat ttggacttgg tccaaacacc acaagggcca ctcatagcca cagtgtccaa
      361 ttactgcttg cttgactata aaatgcactt tttttgcaga gctaatttaa gaatggcagc
      421 ttttaatggg gtttgtatta aacggggact gctgctctgg cttttgcctg cgttctagtc
      481 tgtacaggaa gcaacaaaca catacacagt gaaaataatc agagtgtgat aacattagca
      541 cagcaataac aacagtgata acaaagtcaa tgctttgcaa aaaaaaaaga tcaagccctt
      601 ctggaaatag ccctcaacta gattatctca aatgatgaaa caagtgcatg cactcagtct
      661 ctgcagatgt gctcatattg caaaactttt ct
//
LOCUS       KCLJ01001346             662 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 150266cal ultra-conserved element locus
            uce-88, sequence.
ACCESSION   KCLJ01001346
VERSION     KCLJ01001346.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 662)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 662)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..662
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="150266cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>662
                     /note="ultra-conserved element locus uce-88"
BASE COUNT          188 a          151 c          119 g          204 t
ORIGIN      
        1 tggatcgtgt tcccttccag ctcagttcct tcaaggatgc tgctgctggc tccagaatcc
       61 ccactctccc agctgtgatt tcaccttctc cccagcatct cgcttctggc ttgtgagctg
      121 caggtcagtg ccacaagaca ggccagtcct tcccctcaca ctgctacttt ggaattttgg
      181 atgatcagac cacctcaggg tggaccagag gtttgatagc accctagcca aaggcaagca
      241 gagcatgtac acagcagcaa atgaaatctt ctctgagcca actgttccac ctggacccca
      301 ctacaaatta ctgttttcaa ttaccacctg tgtactcctt cccatgcaac ttattgatgt
      361 aaaattacaa caacactggt ataaataagt tatgctgtgg ttgtaaaatg gaagaaattt
      421 tgttgtagca attatgttca gcaagatgac aaaataaatt tccagtgctg tgcttgcagt
      481 aacctgggga atttaaacct cataatttcc attcatttca gataatttgg agtaatttct
      541 atatgtaata actttgtaat gaaaaacaca gcggtactga agtgatttca actctttttt
      601 ttttcctatg gtatacatgg cacaaaataa ataataaaaa taatatttcc tttttgtatg
      661 tg
//
LOCUS       KCLJ01001347             650 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 150376cal ultra-conserved element locus
            uce-6620, sequence.
ACCESSION   KCLJ01001347
VERSION     KCLJ01001347.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 650)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 650)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..650
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="150376cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>650
                     /note="ultra-conserved element locus uce-6620"
BASE COUNT          203 a          145 c          127 g          175 t
ORIGIN      
        1 tttacaacat cttagcatat ctctaacctc agcttatccc ctcgctcaac acagctaaac
       61 aaatacaaac catcacaccc atttttaatc tttcaccttg gcttctactt ttaaaagata
      121 tttaagagga agcctctcag gctatatgga aaggaaaaag gggaaataaa ttgaagacaa
      181 ttttacaggt cctacttcag ctaaaccttt cagggccttc aatgagaaga taatctttct
      241 gtgattatgg ccaaaccctc tcgttgcttg gcaacacata attaaggaat atgttttcag
      301 atccgctttg caagctggcc attatcagat gaaattactg gagcaacaaa tgtcatcctc
      361 atgcaaatga gatggtcgtg ggcaaaagaa gacagcacag aaatgctgct ggcttcctct
      421 tgctgtgtac cagtaattct ggtgaagaga agggataatt taagattttt agagaacagg
      481 gtttgcagtt gaaatgagag ccagggaagg agggctccca atccctgtgc tctgaaggtc
      541 cttcagccca gagctgtcac tgcgtcggca tcgaccgctc aatcagacac agcgcaaata
      601 aatgaacata tttgtgttcc ccacattatg ccaatttaaa aatactgcct
//
LOCUS       KCLJ01001348             379 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 150483cal ultra-conserved element locus
            uce-3968, sequence.
ACCESSION   KCLJ01001348
VERSION     KCLJ01001348.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 379)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 379)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..379
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="150483cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>379
                     /note="ultra-conserved element locus uce-3968"
BASE COUNT          127 a           78 c           76 g           98 t
ORIGIN      
        1 gtgccaacca gttccacttg tccccaaaga cgatcccatg cagagctcaa agccaggcct
       61 gtgtggctgt gaggcacagc ttaccccaga gttcctggta ataaactcta tttgaagact
      121 ctcagtgaaa agtgtgttcc taatagagga taacatttca tggtcattat gcgatacact
      181 taactttaaa aggaacaaaa atgctgagaa agtaattttc tgaaaaggac tcccggattt
      241 cattactatg ggtcaagtgc ctggggagaa gaattaaaga aaaacacgaa cttgtgcaca
      301 aattaattaa agatatttcc actaataaat tgtccccata tcccaaggca gagccttcag
      361 tttgcaaaat gtggtaata
//
LOCUS       KCLJ01001349             839 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 150587cal ultra-conserved element locus
            uce-7168, sequence.
ACCESSION   KCLJ01001349
VERSION     KCLJ01001349.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 839)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 839)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..839
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="150587cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>839
                     /note="ultra-conserved element locus uce-7168"
BASE COUNT          226 a          193 c          216 g          204 t
ORIGIN      
        1 ctgacagccc aagattttcc agagggcaac ttgcaactcg acagtcaaag tcttcagaaa
       61 ctccttccag gtggtggagc aggaaggaag cgtggcagta cagccttgtc cactgtgcac
      121 tttttcagcc ctgtcctttc tcaataccca ggaaagatta actcctcttc gcacaccaga
      181 gaaagttatt atcattaatg aagaattaaa agagagtgat taataaaggg cccttatctg
      241 gccatgagga ggaggctgga caatggaagg gagaaaatga aaaacaataa atatgaagcg
      301 taaaaggagg cgagcactgc tcccacttgt tagatcgcag ctgcatctcc tgagggggga
      361 aggctccaaa ttgctaatta ctgcctctga aaagacctcg ctctgatatg ttttctgctg
      421 aaaggttccc attaatgaag cagcgatgat gccgtttccc tttgacttgc cttcaattcc
      481 ctccctgagc ttcctcccaa gccgggaaca atgaggccct gggagctggc ggctcccaca
      541 ggcctctcgg agactaggcc gggggcagcc gagtgagggg agccgagccg gctgtgaaat
      601 atggaggggg gagataaggc aaagacagag gaaagaggct cactcccagg agcccaggga
      661 aaatttgcag ttattatgaa ggagatgaga cagattaaaa gcccttgtgt tctgcgctgc
      721 ccttttattt agtggcttca tctctgagat gaaagaagtt ggaaatgact ttctccgcat
      781 tttgctgcaa gaagcttcac ggcacatttt ttgactttat tcctcccttt gtctcttgt
//
LOCUS       KCLJ01001350             638 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 150695cal ultra-conserved element locus
            uce-919, sequence.
ACCESSION   KCLJ01001350
VERSION     KCLJ01001350.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 638)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 638)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..638
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="150695cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>638
                     /note="ultra-conserved element locus uce-919"
BASE COUNT          171 a          132 c          145 g          190 t
ORIGIN      
        1 gcatgacaga acttttcatg acatatgagc agagaggcag caaatcactt tggttcagac
       61 aacggaatcc cacctaaaca atagatgttt aagtagaaag tgttccagct ccttctgaca
      121 aagagcctcc agaggattac aatgcagtca atgttgcttt aattaaattt aatgctgtgt
      181 gaaatgcact ctgagaaact ttgatgaatg actggggcaa ttcatgtggc tcactaaagg
      241 gcatccagct cttgcagggg tgtcaaacca cgatgaattg gttagtacag gcatgtttat
      301 agactgccta aggaaccttg tatctgtgtg gtaatgtcag agataatgtt atgattctct
      361 ggaccttggg gggctttggt gacatggtta atgagccagc ccagggagtg tcccagtagg
      421 ttacttgcag acctcccaca tcaaaaggag cagctttgcc ccttcagagc ctgctgtcct
      481 ctagatctct cagctggccc ttgctttctg tagggccact ttttttagtt cttagtcaac
      541 attaactttg gctgctgaaa ttcaaaagtt gttagttttt aagttggttt ctctgaccca
      601 cctacacaat ggctttcaaa gatttttata ggaacagc
//
LOCUS       KCLJ01001351             672 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 150803cal ultra-conserved element locus
            uce-4954, sequence.
ACCESSION   KCLJ01001351
VERSION     KCLJ01001351.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 672)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 672)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..672
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="150803cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>672
                     /note="ultra-conserved element locus uce-4954"
BASE COUNT          205 a          135 c          139 g          193 t
ORIGIN      
        1 ccacaggaaa acttccccat aaattcacaa aacgttctgg cacttggtat ggttttacac
       61 tctgagaatt tattattcat gaaatagatc ttttgaagta caatttctaa gtactgatgt
      121 tttatcttta agcagtgaac atgagcagag gcttaaaggc ccactgacaa tcactcagga
      181 atagctcaac tgctcatgtc tgggcgaggt cttccccaca cagggaacct tttgtaaata
      241 ttagttacta gaatcacaac actaatacat gtagttaata attatcacaa tgtgccaaaa
      301 ctgcacagtt tgctccctga ttacaatatt aaattgctat tgagctgtgg tatttgcttc
      361 aggcaatact actgagaagc ctccaaagac tttggttggc ctccctgcac aagcatggga
      421 aatgcatgct tacacagaaa gcagaggcag tgctggggtt tgccagaaaa caaacaaagc
      481 tcagacaata gaaggaaagt tttatcagag ctgaagtgtc ctttcacttg ggaactgtca
      541 tctcatgaaa gtaaattgat tagggcttct gtggcagacc attaccaaga gtgaggtgat
      601 tcaagctgtg tgtggagcat cctgcacagc cagctctagc tttgttttag ttgcttttga
      661 tggcatctaa aa
//
LOCUS       KCLJ01001352             521 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 150914cal ultra-conserved element locus
            uce-3568, sequence.
ACCESSION   KCLJ01001352
VERSION     KCLJ01001352.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 521)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 521)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..521
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="150914cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>521
                     /note="ultra-conserved element locus uce-3568"
BASE COUNT          133 a          126 c           96 g          166 t
ORIGIN      
        1 cctttataat tttacagcac ataaagggat gacagtgctc cgagcttttg catttctgag
       61 ttggttctgt taattggaag gagggttaag aacctgcaag gtcgtttcaa tctccatctg
      121 accttcagag taatcctcta tgccaacacc agagcatgtc attaaaatga ggtccacatc
      181 ccgccatccc tttattctct ccttgtgcac attaattgct cataagttga tttgatctcc
      241 ctattctgca agaagtaaat tgccctctta tttcgccatt ttcatcctgt tttcttaatt
      301 aggcccttaa aaatctctag ggcctcaggc aggcctcatc ctgggaataa attttgatct
      361 gctgataaag agagcccggg ctggaacaat gtcatgggct gccctccctg ctattctcct
      421 gacatgaaaa ggctatcact ctgtgttaat ataggaaata attcacactt caggcgttgt
      481 tctctattta gtgctcgcac tcccctgata aatcaaatca g
//
LOCUS       KCLJ01001353             773 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 151015cal ultra-conserved element locus
            uce-6047, sequence.
ACCESSION   KCLJ01001353
VERSION     KCLJ01001353.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 773)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 773)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..773
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="151015cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>773
                     /note="ultra-conserved element locus uce-6047"
BASE COUNT          248 a          143 c          145 g          237 t
ORIGIN      
        1 caaaatgtat gtaggcactc ctgtttagta taaatattta ccaagagtta aagactattt
       61 acattaacat atatttataa aacagtgtgg aaaggggtga aaaacaagta tatgccatag
      121 tacaattcta attttgtttt attattcctg ttcaatgtag ctgagccatt aaaagccctt
      181 atttgcatat attatgtcag gattcacaaa gagtcctctg ttttctgtcg tgtccttgca
      241 gcagtctgat ttctcttagt gtactgccat cactggtctg tgcaggagag atcagagccc
      301 taataataga tttttgacag ggagctcgcc tgctacctgc cctacacaaa tcctcactgt
      361 tcatgtttgc ttcatggcaa caaagcagac agaaggaaaa tgccaagtgc tgaatttgag
      421 gtacagccct gccatagctt gacatttcag cagaatagca gtttatgaga tgcataattt
      481 ttcatctggg actcagctgc cattttcata gaggcttgca gctcatcgac tgactggaag
      541 tagggcaaag gtttacagca tagatcaagg tctacatcca tcctatagct atttaaaaac
      601 aagtattatt ctctaaataa ggttagagaa ctaagcatta aatgtttatt ttctagccaa
      661 tttcattccc gcaaagaaaa cactttgcac agcacattga ttaaaaatga tcataattga
      721 ttttattcac caaaagatta aatgagtcct ggagaaagaa tgaaggagga gtc
//
LOCUS       KCLJ01001354             389 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 151128cal ultra-conserved element locus
            uce-5402, sequence.
ACCESSION   KCLJ01001354
VERSION     KCLJ01001354.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 389)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 389)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..389
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="151128cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>389
                     /note="ultra-conserved element locus uce-5402"
BASE COUNT          119 a           83 c           71 g          116 t
ORIGIN      
        1 ttgttcatga catgtcatga acaaattacc aaaatgtgtt gtctcctcag gtgtcagttt
       61 tcctctcttg cagtgactga tggttcccag tgttattaca gaaacagatt gatcttttta
      121 atgagctagt ttaatagact ccaaaatctc accgtggctg ctcatccgtg tcagaccata
      181 tgcaccaaga aaacattcag taaaacacaa agctcggctg tcagattgct ctataaaacc
      241 tcacatacag tagacttgga tatgcagata aataacaaga gaaatggata tgcttctgaa
      301 attataaaaa atcatgatgc agctggggtt acacgctttg cctaatcctc tactgtactc
      361 tcctctaatg gggtatgcag ttacccatg
//
LOCUS       KCLJ01001355             411 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 151239cal ultra-conserved element locus
            uce-4278, sequence.
ACCESSION   KCLJ01001355
VERSION     KCLJ01001355.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 411)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 411)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..411
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="151239cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>411
                     /note="ultra-conserved element locus uce-4278"
BASE COUNT          112 a          101 c           95 g          103 t
ORIGIN      
        1 gattagaccc actctggcgc tattgggaat ggtgtgaagt gggaattgct cttctccctg
       61 actgcaaccc aacggaccca agaccagccc catcccaccg agaggatgga agaagaagac
      121 agtgagatgg ccgtaattta tactctcctg cctctacttt atggctttct taattcggct
      181 cctgctacta ttaatgtagt taatgttgag attatatcta ttttctggcg tcaggcagtg
      241 atttatccaa gccatttttc cggagccggc tcccacgctg ttaaatcaag cgactgccaa
      301 ttaagtgctg actggggaag tggtaacaga gatctaacca caaattaatc cgggttcgca
      361 aggccgaagc gctgaaccaa acaacggtcc accactgact taaagaagga a
//
LOCUS       KCLJ01001356             618 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 151338cal ultra-conserved element locus
            uce-5700, sequence.
ACCESSION   KCLJ01001356
VERSION     KCLJ01001356.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 618)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 618)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..618
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="151338cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>618
                     /note="ultra-conserved element locus uce-5700"
BASE COUNT          202 a          120 c          127 g          169 t
ORIGIN      
        1 caataacaac cgtaaagccc tccttgtgag ctaagttatg taaattgaag aatgccctta
       61 ctggcaacag gtatattatt tcaaagaaga cagacaactg tgttaatctc ccttctgctt
      121 aatccctgtc tctccacaaa tcatcatgtt gacagtttaa acagatttag atgtgactga
      181 aatcaagaag aggagatagt ctcaggatgc tgaggctgat gcaggcctcc aagaggtaat
      241 tttgtttgtg gtagagagag aacacaggag agagagtaaa tctaacaaat ctaacaaagc
      301 ggccttctgg cccagccctg aggatcaaat ccaattccac caagatacac attaagccct
      361 gtctatcaca gctttgccct tgaaaagaca aataatgatg agattcacct tgttgtgctt
      421 gtccctggag agaggagaca gaagatattt aaggaatctg ctctgttgct catttcaaat
      481 gccttttatt atttaattct tagtacctta gaggagggga aatagttatc tctgttagtt
      541 taaccacttg ctgcccctta agtaagaagc aatcactaga ataataaaaa agaatcgagt
      601 aaacggtggt cagtggaa
//
LOCUS       KCLJ01001357             729 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 151448cal ultra-conserved element locus
            uce-7553, sequence.
ACCESSION   KCLJ01001357
VERSION     KCLJ01001357.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 729)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 729)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..729
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="151448cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>729
                     /note="ultra-conserved element locus uce-7553"
BASE COUNT          221 a          145 c          154 g          209 t
ORIGIN      
        1 tgaattggtt ttatttctag tctactgcat tggagcgatt taaatcattt tcatgtggca
       61 ctgcaaaaat gcaaaggcac tttaccagaa agaaatggtc agcaattttt gcaaagttgg
      121 cttgcaacag ctacaacact atgtggagaa aacagttatc ctgtaataat aagactaatg
      181 aattcagaaa tccattgatt gaactggctc tgggtagatt atgtgcaggc ttgcttcaag
      241 gagaggaatt tatgaaatgt ttgccgcatc cagcaagcac tgctgctata atacagctgc
      301 ctcctcagtg gtttgctttg atcctgtgga atgaaaggac aggaggatca gctcaggtct
      361 aaatgagatt acagctggtt cggcagctta tctggtctaa tgccaactag tgtggctttg
      421 cacgtcctaa ggggtttaca acagaaactg tttattgagt atcatcggtt tactcaacac
      481 aagcaggcta atccttccca gcctcagcat gttgtaggat tgtgtatgag ccaaaccaaa
      541 agctggtgca gccagggcct ccagagccct ttgtctcgct tcatattgaa aaaaataaaa
      601 ccaataacca gccctattgt gagcaaaagg ttaatctgac ctaaaaatct tacaaaagca
      661 tcttttaacc ctagaaggga tggtagcctt tctctgattt tctagtttaa aaacagctgc
      721 aacatttaa
//
LOCUS       KCLJ01001358             409 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 151559cal ultra-conserved element locus
            uce-3964, sequence.
ACCESSION   KCLJ01001358
VERSION     KCLJ01001358.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 409)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 409)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..409
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="151559cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>409
                     /note="ultra-conserved element locus uce-3964"
BASE COUNT          112 a          102 c           79 g          116 t
ORIGIN      
        1 aaaaaggtac attattttaa aggcagcctg gacctcgaag caactcacac agagaaacaa
       61 agatcagtgc ctacctcaaa atcatttgct ttattgtagt gcatgttcag ggccctgtac
      121 agctcacagt ctctggttat agacagctcc tcagtgctcg tgaccccgtc gttgatggct
      181 tgccgtgcat acttctccat ctgaatgtag taaaactcac ggaaattgct aaaccacttg
      241 atgagctgag aggtaatgca tctgttgaac tgttaaattt aaacagtaag aaggataaga
      301 gcactgacat tcctccccat ttctttcaaa aagcattctt tcctcccctt ccccaccccc
      361 atgtctctgt gcttctgctg gaagcagctg gcaaattctg ttagtgtat
//
LOCUS       KCLJ01001359             435 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 151668cal ultra-conserved element locus
            uce-3681, sequence.
ACCESSION   KCLJ01001359
VERSION     KCLJ01001359.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 435)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 435)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..435
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="151668cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>435
                     /note="ultra-conserved element locus uce-3681"
BASE COUNT          130 a           93 c           79 g          133 t
ORIGIN      
        1 tctatccccc tactttgggg ataatttaac atgttacaca ctaactttcc agtaatggca
       61 ctctggcttt ttgaaattct gcttccctgt tttatggctg ggcgtctaat ggttatctcg
      121 cagccctgcc tctggcaatc atgtaaggaa taaatagaag ctgacacagt aatttactta
      181 aatcttctcc acacttttgc agcattttcc tccagaggat acccccgaaa caacaattat
      241 ttgaaatgtc atgcgttcct gcccctaggc taccgacaaa tgaacattaa atctattaac
      301 aacaaaaaaa attaaatgtt tacttttctg cgaaggtaaa ggagaagctg gagagaggga
      361 aggatgtctc caataaattt cttctcaata ataaagaggt gtagttaatg ttctctctaa
      421 gcggagtcag cttgc
//
LOCUS       KCLJ01001360             645 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 151775cal ultra-conserved element locus
            uce-6017, sequence.
ACCESSION   KCLJ01001360
VERSION     KCLJ01001360.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 645)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 645)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..645
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="151775cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>645
                     /note="ultra-conserved element locus uce-6017"
BASE COUNT          193 a          132 c          123 g          197 t
ORIGIN      
        1 cacaggtgtg tgacaatgtg atgcaaaagg gaggcacaaa gtgacaacaa aggccactgg
       61 aatataaaag ggcatgaagc gagctatcag tttgaaccta ttagaggcag tgaaatgcaa
      121 gagaaagtgg ggaaattata ttacagtgta caaagtaata ataactgtgc cttcatgtct
      181 taataccctc ttgtcccagc agtcctgact ttctaggcag cccacttctc cacattaaca
      241 gtagtcattt ggagagcagc aaacgtgcca ttagaagcac ttttacaagt gtatattcat
      301 ccaccaatta gcttaatgtg gctgctttct gcatattttc tatccaggct tgcacaaatc
      361 ttattaatat ttccccctag cgctttgaca gattaccttg tcattatgca tcctggagcc
      421 ttttaaacaa tatgggtaaa ctactgtttg cgaggttaat gacaattatc ccctaattac
      481 tgcataagtc actcagtcca ctttatctca taggcagggt tctgctctgt gtatctgcca
      541 ttgtgtcact gtaaatgaat cttgtatagc tatgtttatc tgtcgttgcc ttgtaaatta
      601 cactgacaga agaatgaaca aattactgtg tatcatcact taaat
//
LOCUS       KCLJ01001361             766 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 151885cal ultra-conserved element locus
            uce-1322, sequence.
ACCESSION   KCLJ01001361
VERSION     KCLJ01001361.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 766)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 766)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..766
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="151885cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>766
                     /note="ultra-conserved element locus uce-1322"
BASE COUNT          205 a          170 c          139 g          252 t
ORIGIN      
        1 ccatcacatt ggcttttgct ctaggaggcc aacttcacag aagtcccctc tccttgccac
       61 ttgacttcac catcaacttc ccaaccctct gtcctccttt ggcctgcatg tttctggcat
      121 agtacccact ccaaaagcat cctgcccagt cagatgatgt atttgaagga cagatgaaac
      181 gagctagcca gcacagacaa acctccatca gaaaaagttg tgtgtctttc atgaggatgc
      241 tgttttgcat gttgctgtat tttttaatta ttgtaatgag gtgtgattgt ctattggtta
      301 cccacaatac ttcttgggga ctctcccccg gtaactcttg tcaacacttg ttaatctgac
      361 aaaaggctac aaattaagct ctgttaattt aatgttttct caccgagatc taaataccga
      421 aagaggccca aagcgcaact gaagtccttt gattcactgt actttatttt ggtataaatt
      481 tacattcatt attgttttcc tttggatgtg tagccctcaa ttagtgtgat ggctccatta
      541 aagcaagcga gacttcgcct ttaattatta caacaaaaca cctagtttca gcttggggag
      601 agggtctcta ttgacataag cagaggttat aaaatttaat tagccattcc tatcagattt
      661 atggcattca aattgttctg tgtttctttc ctttgatcct tgctgtacaa tccccaagat
      721 ttttgttctg atcaaatgag aataaagctt actgtgcaga gagaag
//
LOCUS       KCLJ01001362             753 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 151995cal ultra-conserved element locus
            uce-1005, sequence.
ACCESSION   KCLJ01001362
VERSION     KCLJ01001362.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 753)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 753)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..753
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="151995cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>753
                     /note="ultra-conserved element locus uce-1005"
BASE COUNT          250 a          157 c          125 g          221 t
ORIGIN      
        1 tttacatgat ttctagatag aggacatatc acttgaaaac agatttaggc aaatgtcata
       61 tgcaataaat atttattgtt agaaatattt gtggtttcaa caaggtcttc attagcaaac
      121 aaaggaaaaa aaatcaagct attttcatgt ttatacagca aggatgtctt ttgctaaact
      181 gcattttgag ctacaccaga tcaattcaat aagagaaagc ccaacagaga acagatgcaa
      241 tataagagca ataaagggaa gtaaaaaaaa ttaaaaatcc tttgttctcc ctgcagtaca
      301 tccgtaaatc tattagtgtt attttccttt cttctctttt ttgcatccca agccagatct
      361 caagttctct gaagcaatcc ttaatcaagc tccccaaagg cctacgactg catgcagcaa
      421 tttctcccct gctctcagca cagatgtttc gagcacattc cattacacct acatgccatt
      481 acagctaatg gcttattctg atgaagaaag ctgctttctg ctcagtgcag caaaggggaa
      541 aatagcctcc tgtacagttc gtacactgca acaatgaaat gtgggggcag gtggtacaac
      601 agaactctct aatgttaatt acatactgta ttacccccaa atttggctgg tcattaatta
      661 tgctaattta ccttcctgaa aattagcacc actcatgtga acaaaaatga actacggaat
      721 agtggtttgt aaactccaac cttttgagcc acg
//
LOCUS       KCLJ01001363             762 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 152103cal ultra-conserved element locus
            uce-5251, sequence.
ACCESSION   KCLJ01001363
VERSION     KCLJ01001363.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 762)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 762)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..762
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="152103cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>762
                     /note="ultra-conserved element locus uce-5251"
BASE COUNT          192 a          167 c          218 g          185 t
ORIGIN      
        1 tttgtgttct gttttgaagg tcttgatttc ggaaggactg atgcagtttg ctcaagatcc
       61 aaagttcatt gaggtcacaa cccaggagct cgcagacgcc tgcgacatga cgatagaaga
      121 gatggaaaat gcagcagaca acattctcaa tggtaacagc aagcagagcc ccaatggcaa
      181 cctcttgcct tttgctaact gcagggaccc agggcaggac agtgcaggag aggaagagga
      241 agaggtgcag aacccggatt gtaggataag tcaggaggag ctcaaggaca gcaggattta
      301 tatcagcagc ctgtagttgc cagggctgga agcgatgctg gttttttatt tgtttcaatg
      361 ttcctaatgg gtttgtttca gaagtgcctc actgttctcg tgacctggag taaccggaac
      421 agcgttcttc attcatttct gttgggacga gtcgcagagt tgggtggtgt aagaaagctt
      481 ttcaggagcg gatataaccc cagcacgtgt ccatgaggga agagtagaag aggaggagag
      541 ccagctccct ctttttttca gtccctgcac aaggaacctc cggagcacga acctcagctt
      601 cctgtggatc gccctagccc tgcgccaaac gggtgtcttt caaccttgct tgtttttgca
      661 catgttctgt atgagcctca ccgtctccat aaagccaagg ccctttgatt cggaaggaga
      721 ggaagacttc tgctgtgatg gggaggagga agcaggagaa gc
//
LOCUS       KCLJ01001364             383 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 152210cal ultra-conserved element locus
            uce-6281, sequence.
ACCESSION   KCLJ01001364
VERSION     KCLJ01001364.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 383)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 383)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..383
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="152210cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>383
                     /note="ultra-conserved element locus uce-6281"
BASE COUNT          120 a           67 c           70 g          126 t
ORIGIN      
        1 aaaatctagc ctcctgcagg ggagctatta ttgctagact gtactagcat tatcttgctt
       61 atgggggggc atattgttta tgcagcctat ttatcagtgt aggaatatat ctaccaatat
      121 agcaatatct ctgcagtaat ggcatacaag aataaaagag ttttcatgaa cacagagttg
      181 ctgcctgtag catgtacatc tgagatacta aaggattatt tacctatcat taagatatgg
      241 aatctagtct agtttttctt gcagcagaaa tcatattaaa ctctctggct attatatcta
      301 gcatccattg ggcacctttt cattctgggt aacctaatat aaatgaagaa aataaatcca
      361 cagcaatttg ttgagatgcc ttt
//
LOCUS       KCLJ01001365             622 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 152317cal ultra-conserved element locus
            uce-2687, sequence.
ACCESSION   KCLJ01001365
VERSION     KCLJ01001365.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 622)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 622)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..622
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="152317cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>622
                     /note="ultra-conserved element locus uce-2687"
BASE COUNT          199 a          117 c          129 g          177 t
ORIGIN      
        1 taaacatttt tgattttctt ttatgttcat cttaatcaaa ttaagtttca atttaaaaga
       61 caacctacaa catgctaaga aaagctgcat gaagcatctg tcagcgagtg gaatgtattg
      121 ctgttatgcc cacttttctg tgccatttgc tgcctgtaca cagcatcgat ggttatgcac
      181 agcagaagct gcaagtcggg tgaacatgtt catagaattt tggttgcatt gcacaaaaga
      241 aaacagctct caggggaggc agctgcacaa gcaaaaatat aaaggtaaag ggtaggtacc
      301 aagagagtca tgtttctcaa acacagacgc ctgtcagcct tgtcctgtgg agaggggtta
      361 aagcttttaa atgaattggt gtgattagtg caacttagaa aataaaatga atgtaaacca
      421 aaccaaaacc attatatttc tctataattg gaaagaaagg ttaagattgt tctacctcta
      481 gttccctcag aattcctgac tggccacagg tctctaaatc ctccagagcc tgagaccaga
      541 aattttcctc ctggtcagcc tcggtgttat catgggtacc tgtgaagcta gatttacaat
      601 gagaagttaa aaaaatgtgg ac
//
LOCUS       KCLJ01001366             759 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 152427cal ultra-conserved element locus
            uce-6222, sequence.
ACCESSION   KCLJ01001366
VERSION     KCLJ01001366.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 759)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 759)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..759
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="152427cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>759
                     /note="ultra-conserved element locus uce-6222"
BASE COUNT          252 a          148 c          138 g          221 t
ORIGIN      
        1 ctctggggag aacaggatta cgagtagaaa ctgctcagaa tccctaaatc aaaaagtcat
       61 ttaacaaaac aaacttaata taatcatatc agccatgcaa acaggaacat catttttgaa
      121 ctgcatttta aatgcaaatg aaattactac agtgctgtgg catttctgtg aaacagtttc
      181 ttggcactag ttccaggctg aaattatcta attttgaccg gcgtttgtga cattacagca
      241 acaatgtgac gaaagcagga ttggctctgt ttgcttctaa ttgacatctg cagttgctgg
      301 gagacaatgg catgtgctcc taatggagag tagctttcaa tcagttcagc aatcagaaaa
      361 taatcatagt tctcatactt gaacacaaag cacttactta atgttttcca acctgctaga
      421 gtctggtttc aaagtgtttg agtgcttcac cattttgcac aatgtgatca ccaggaagat
      481 aagattcagc tgtcaaaaca gataagaatg aaattaaact acttcaagta ataggttgaa
      541 taatgatgaa gttacaggct aaacaaaaac cctgtagttt atttccaagt aagtagtgaa
      601 aattggtaac atggtctgca aactgtgatt gcaaataaga atattagaag tccttgaatt
      661 tccaaaatgc accacatcgt catgaaccac cgtaactaat gtccagcacg tttagctctg
      721 tcctccagca tgttttgctc atcaccttta cctgtcacc
//
LOCUS       KCLJ01001367             827 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 152536cal ultra-conserved element locus
            uce-2647, sequence.
ACCESSION   KCLJ01001367
VERSION     KCLJ01001367.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 827)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 827)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..827
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="152536cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>827
                     /note="ultra-conserved element locus uce-2647"
BASE COUNT          231 a          190 c          158 g          248 t
ORIGIN      
        1 ccttcagaaa taacccagag atgctgccat ctactccttt aaacaaaccc agcagggtat
       61 atcagatgta gattgaggat taagttataa ttacaatcaa tatcttttcc atgccccatt
      121 ctccaaataa tatatatttc agtcagtgca ctttggggat ttatctctgt gaggcctgtt
      181 tctgcccaaa tcagtgtgtc tttccctttg atattcccac agtgttcaca tataccctca
      241 aacatacaca gccctgggta atatgtctcc aatgcgatga aatcaatggg aacacagcct
      301 tttttgcctg acagtattgt cagggtgtat tatctggttt aggctgtggc ttcagttcat
      361 agcagtcgtc agttaaattt ccctttctga agctgagcaa agtgtggtaa tgtcacagcc
      421 acaggcgact gccgctcaca ggacggttta ccggtggagc ttagcctcct ggcttgtcac
      481 agtgtatata tctcagggtc ttcttttcct tcctactcag agatttccaa gaatgttgcc
      541 tggagcagtc atgggatgca aaaaaagaga gatttttgtt ctgcacttag caacattacc
      601 acacttcaca ctcagtttct gataagggga aatttaactg actgctctga actagatata
      661 ccagataata cactctgaca gtgctgtgga taaaggctgg caaacctact aatttatatt
      721 tcattatccc tgcacttggc ttaatctgtt atctcttact aaacgttagc aagctcacaa
      781 agagctgcac tgagcagcag aaaatggaac cacaaacacc tcttgaa
//
LOCUS       KCLJ01001368             797 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 152646cal ultra-conserved element locus
            uce-971, sequence.
ACCESSION   KCLJ01001368
VERSION     KCLJ01001368.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 797)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 797)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..797
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="152646cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>797
                     /note="ultra-conserved element locus uce-971"
BASE COUNT          236 a          138 c          176 g          247 t
ORIGIN      
        1 ctgcacaaag agccccagtg gacttttgat gaacaatgga tgcaggagtg ggaatgcaaa
       61 ctatcgggaa attattccca tccattattt tgatccttcc attttaaaat tgaaaatgca
      121 acacaaaaat aacacggtgt ttgcagccaa ttctgctgat tgcagggcat cgtggaagca
      181 tgtcagggtt tgctttcttc ccctcctgtt agcagacaga ataggtgaag aggttgagct
      241 gcagatctca tttctcctgt tttgctgctt gtgaagtctg ccaacagaat ccaccttgac
      301 aaagtcaagg actctgcgtt taatgttgaa ctgagtgaat aaattatgca tgaaattgtg
      361 tcggagtctc tagtgtgctc tagaattgct ccttttgata tgaaaggtta attcagaaag
      421 gagtccaaaa tagctggaaa ttgtggggat aagtggatag tattcactgt tgtgagctgt
      481 tattactaga aattgcattc cctctctggc ttccctagag atttcgcttt gctggtgaat
      541 ataaactgta ctcaatagaa tagcatttag gagtaacaag agtgtatgtc cacacacagt
      601 aaaatattct aatggtgttt taaaaggaaa ctgtactttt tcatgtattc tgtgcacccc
      661 aaggatggta ttacatttag gtcaagaaca aggcacagga aaggtaataa gttttgagta
      721 catctttatt acaaatatgc tgactgtatg atccatatca aaggaactgg gcagtcattg
      781 agtttgtatg tgcctta
//
LOCUS       KCLJ01001369             507 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 152760cal ultra-conserved element locus
            uce-7018, sequence.
ACCESSION   KCLJ01001369
VERSION     KCLJ01001369.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 507)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 507)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..507
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="152760cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>507
                     /note="ultra-conserved element locus uce-7018"
BASE COUNT          158 a          113 c           88 g          148 t
ORIGIN      
        1 accattcacc gcaaattcca agtcctaaaa agtcatagtc tgcagaaggt tttattaacg
       61 tttgtctcaa cttgactggt gcttcttacc tcactgcctc cttcgcacag agccagggcc
      121 caattatgtt tccattaaac ttttgacaga tttacttaat aacagtctca gcacttttat
      181 tgagcatgca agactaacaa aactttggca atgcataagt gtaacacagt gacaagaaga
      241 gagagctttt acaattaaat cttctaatac tggcttcaca gtgtggaaat tgtgctacat
      301 ccaccaaaag agggcccagt ctactcaaat gtttaagtac ttcaccccag gaacaaactc
      361 ctttgcgttt ggattcagat tactcttgac ctgaggaagg gaagaacaga aattttcagc
      421 ttccattttc aagctgaaga caattaaggt ttttggattt agaggaacaa tcatgtatct
      481 tacacttagc agctctacaa tccccag
//
LOCUS       KCLJ01001370             724 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 153081cal ultra-conserved element locus
            uce-691, sequence.
ACCESSION   KCLJ01001370
VERSION     KCLJ01001370.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 724)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 724)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..724
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="153081cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>724
                     /note="ultra-conserved element locus uce-691"
BASE COUNT          260 a          130 c          122 g          212 t
ORIGIN      
        1 aataataata cggtgaaatg gtacagcaga cagcatgaga gagatctgct ttttatagta
       61 attgggatat aaacacctaa aatcaggatt ttatactgaa agggcaagct aaccttacta
      121 atggtgatta ctcactgtat aatagaaaag gaaataaaag cttttttata aaacgtatca
      181 aatcctaaga gtgctgttaa actcattaaa gaaaaaatga agttagagaa actggtctta
      241 ttttttttca ctcccagtag agttcatttc tacttcaaca actaagccaa ggtcacattt
      301 aactcacttc aatttcaccc agtgcacaag ctaatgtcaa tagtacagct gccatgcaga
      361 gctaaagact gatggttaga caaagccatt tacacaaggc tgggtctttc atcttctctc
      421 agctagtgac ataagaaagc actgaggtta ttctcaacta gagactaaaa ctggcatatt
      481 agaaaaaatg ttattctcct tagctgtcac acaaaggatc tgaagaaatg tagaaatgtt
      541 tttttccttg gtcatctagg gagatcacaa agtgactcta atagccttca ctctgaaatt
      601 ttcacatggt ttaagtgatt gccaagtctg atattttcca tttacacttc attgccatca
      661 gaaaaagaaa aaaatcaata tacctaccta ctcaagtgtg tcacaggatg agcttataaa
      721 agaa
//
LOCUS       KCLJ01001371             458 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 153193cal ultra-conserved element locus
            uce-3575, sequence.
ACCESSION   KCLJ01001371
VERSION     KCLJ01001371.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 458)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 458)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..458
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="153193cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>458
                     /note="ultra-conserved element locus uce-3575"
BASE COUNT          152 a           80 c           70 g          156 t
ORIGIN      
        1 gtataaatat tcatatgagc aaagatgctg tcaaactcct gacttgacat gtaaaatgaa
       61 aatataacaa agatactcca aatttggggc ctggctgcat agtcagggta aagaaatgca
      121 cctggaagat gtgttttggt ttagggaatt caaatgaaag ctcctcaaac tcgacagttt
      181 aatttacttc tcttaagctc tttaatacca aacttatcag ttctctctgt taggcattaa
      241 cttgttaaat gagtcttaat tatacataag cagatggaga tttgaattaa aattacctta
      301 cactcgagtg gctttagttc attataacat atcttcctct taatcattta ggcagtctca
      361 tcatctttca tatatgaagt tattaaagta ttccaatttc catatttctt cagatacatc
      421 cactattaaa tggcacataa tacacattag ttggtgac
//
LOCUS       KCLJ01001372             599 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 153296cal ultra-conserved element locus
            uce-7768, sequence.
ACCESSION   KCLJ01001372
VERSION     KCLJ01001372.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 599)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 599)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..599
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="153296cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>599
                     /note="ultra-conserved element locus uce-7768"
BASE COUNT          172 a          129 c          115 g          183 t
ORIGIN      
        1 agtggtgtta tgttccatta ttttgtattt taacaaactt tcaaataatt acaatattaa
       61 gttttggact gacctttcaa aattagtatc acttgctagt gagattatgt gtgtgaatgt
      121 tgtgtttgcc cctaccattt tccatatgct ctgcctcacc aacactgcca tccggcgtag
      181 tcctttcgta gttgtcctct gggagtggaa gggcacccag tcttggccct gatgaactct
      241 tactgcttgg tgtttctgac tcctccagac cgctgtcata gcaactctgc aatgaccctt
      301 gatgcgggtc ctgaggctga ctcacaacag aaaacgtcac tctacgaaac ggctgcaaga
      361 gaaaagagtc tgaatgtcac tgcaaagttc agtctttgaa caactgattc tcaaaacatg
      421 acttaagcaa actaataaca tttaccaatt aagcaatttt gtctacatta aagcaaacag
      481 aaagtacagt tcttacataa aaggccactg gacagagtat gcatggaatt ttactgttgg
      541 tcagaacatt cagacagttt atcatagcct cctttcaaat ggctataaga gagctggtt
//
LOCUS       KCLJ01001373             530 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 153406cal ultra-conserved element locus
            uce-4010, sequence.
ACCESSION   KCLJ01001373
VERSION     KCLJ01001373.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 530)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 530)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..530
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="153406cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>530
                     /note="ultra-conserved element locus uce-4010"
BASE COUNT          184 a           80 c           96 g          170 t
ORIGIN      
        1 cacaaactgt tccatttatg tgataaattt ctatttttaa tgactagtta taaaggcttg
       61 tacagatatg catctgtaag caaactggga ataggttaga gaacacaatt ccctggtgta
      121 aaaagcaagg tttagcagta atgcttttaa tctggacttg tagaggattc gggagcatcc
      181 atagatctgc ttcagtaatt accatacccc aagtggcact ggaagagaca tttgcctaaa
      241 aacttgatgt cttcattaca ctgtttacat tttaattaga aacatgaaaa ttagtgattc
      301 atatggacaa ctatagttta agtgggtttg ctcaccatcc aataaatcag aaaaaaaagg
      361 caaccctaca acctgcatct gcaagcagca aacttacagt tgtaataaac agtttactag
      421 gaatcattca tgggaataat gtgttgatat tagaagctag tttttgtatt ttatcagaga
      481 ggaaattttt atgtaaatta gagactatta ttttaaaggt aatgctaatt
//
LOCUS       KCLJ01001374             635 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 153512cal ultra-conserved element locus
            uce-5824, sequence.
ACCESSION   KCLJ01001374
VERSION     KCLJ01001374.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 635)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 635)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..635
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="153512cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>635
                     /note="ultra-conserved element locus uce-5824"
BASE COUNT          210 a          133 c          110 g          182 t
ORIGIN      
        1 agaaggctga ttttatggag aagacaactg tgtaatcatt cagctaaggg tcagattctt
       61 cctgaacaga cacagattca cctcccagtg atgctcttca gtggaagtaa acagtgctgg
      121 caatgttgca cacacaagca acaaacagtc ccagaggctt caagaaatga cacggaaagg
      181 cctttgagct cagtcctcaa tgcacttttg tttttcaaaa caaaaagaaa ggaaagaaca
      241 acctcacttg ggcagaactt accttgccaa actgttcaaa gtattgcttc acgtcttcca
      301 ctactgtatt agccgataat ccacctacaa atattttctt tgttcttgtg accatctgta
      361 agaaattaca agacaagcac atggtttaac cagattattt caaacaatat gtggaaaaaa
      421 gaaatattct ccagatccca tccctaaccc agataatgag aatacttcaa gcaatttcta
      481 ttcgatttga ttagatactt ctttctccgt cttgttttgt ttttatttga gagatggctg
      541 agtaaaggct ctcaataaca actctagccc ccggatattt caaatgattt ttattgtgct
      601 tctcaatgca aataaaagag aaaaaggagt ccaag
//
LOCUS       KCLJ01001375             788 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 153623cal ultra-conserved element locus
            uce-3085, sequence.
ACCESSION   KCLJ01001375
VERSION     KCLJ01001375.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 788)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 788)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..788
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="153623cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>788
                     /note="ultra-conserved element locus uce-3085"
BASE COUNT          258 a          132 c          134 g          264 t
ORIGIN      
        1 taggaagata tagcaaagga acatatcttt tgtatttctt ctacaattgc atatgacaaa
       61 ctttgcattt taaaattgca gtttcaaaga ccaccataag aaattacacc aactgtacaa
      121 ctgaaaatct gggttgtccc atgtaccaag tgggagttat ttacaaactt gaggaagaaa
      181 ctatgaatga gcacttcctc ttctcaccca gggcctatag cttctctgct gttgcaagat
      241 tgtagataag tttggtattc aggttcactg tttgacccat taaactggta ttgaggtata
      301 atttgtgtgt tttcccagta cggttgcaca tagaatggga ttcatttcca caagtttgaa
      361 taaatttatc cagttcagtg aacctgttgt taagcttagc aaaactcagt aggtggcttt
      421 aaagtcctgt aattagccca ttacataaaa tctgtacttt agatttttgc acattggtta
      481 ataagtataa catgcttcgt atatataaat agcattacat taaatgatgc aacataaagg
      541 aattaaaggc caaagtagtt aaataaaata cttgaaggag atctcaaatt agcatgttta
      601 attccaactc attgaacagg aaaaggcttt agccttactg taccagttct atacaatgtg
      661 cagaatagca gatatttagt ctctgtttta cataaggtcg ctgtcatctc tgacctctgt
      721 gtgactttgg aaaaatgttc taatttttct tttaaaatct aatcattaca atgtctaaat
      781 atagcaat
//
LOCUS       KCLJ01001376             641 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 153731cal ultra-conserved element locus
            uce-2018, sequence.
ACCESSION   KCLJ01001376
VERSION     KCLJ01001376.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 641)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 641)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..641
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="153731cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>641
                     /note="ultra-conserved element locus uce-2018"
BASE COUNT          198 a          140 c          115 g          188 t
ORIGIN      
        1 catttaaggg ccgatttgaa gattcctacc atgtggtctt tatttttaca ttttcagccc
       61 attttcttcc cagcccatct caggaattgg gcagtcagca agagccagag agtgctggca
      121 tgtatcatta cattctcaag atggcatatt tactgctatt gccagcaggg tcgtgcttct
      181 gtcctagtaa atgtagtgga gtatgaaaaa ggcaattaca tctcactggg tgacctttta
      241 acagccatga ctacctccta tctatacata attattatag gtgatgattt ccaagtatta
      301 caatctccta cagcctcctt taattcacat cacatttagg cacgtttgtc accagtgcta
      361 gaaattttaa cccccgaaaa ctgaaaaaat agaagaggaa aagtgatagc aatggatgtc
      421 aagctctcaa gtcatcctaa taaaaacaca gcaaataaga tgtcgccctg tttgtattca
      481 ttatcagttc ttacatgctc cgactcttgc attaaacatt agacagcctc tgatgcctgc
      541 ttaacagttt aattccctcc tcagtattca ggctgtcata ataaaatcag tgaagcacac
      601 aaagtcaaat aagagcaaga ggaggcattg aacatgtagc a
//
LOCUS       KCLJ01001377             465 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 153838cal ultra-conserved element locus
            uce-2699, sequence.
ACCESSION   KCLJ01001377
VERSION     KCLJ01001377.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 465)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 465)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..465
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="153838cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>465
                     /note="ultra-conserved element locus uce-2699"
BASE COUNT          142 a           79 c           96 g          148 t
ORIGIN      
        1 aagtccttgg tgtattgcag gagcatgcag tacagatgta ggggaaagct aggtgtcagg
       61 gatcctcttg gtatgattga cacataaagc aaattttttt gccattccaa tgtgtgcttt
      121 ctcgtggata tctctgagac ccaccactgg agtaaatcct ttgtcatttg gtgggtttta
      181 ttttaatgaa agcaatcggt cttgtgtgca aataccagac tttgctgttt gatatgcaca
      241 gaaatccaat cagatgctta attagatctt aacacgagtt ccaaacagct ggctaattcc
      301 cttgtttctg attaaagaga ttacaaaaat aaaatttaac attgcattta catacagctc
      361 taaaaggaaa cacttaccca taagttttag tcatttagga aattcatgtc tgctcaatgc
      421 tagggatcaa agattttagt atgatgaatt acagggtggc aagag
//
LOCUS       KCLJ01001378             612 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 153944cal ultra-conserved element locus
            uce-6766, sequence.
ACCESSION   KCLJ01001378
VERSION     KCLJ01001378.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 612)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 612)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..612
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="153944cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>612
                     /note="ultra-conserved element locus uce-6766"
BASE COUNT          191 a          106 c           97 g          218 t
ORIGIN      
        1 agctgcagct cagctgcaca gtagtatctt tacatctgtg ccagctaggg ttattactga
       61 gttttataac ttctgctata aataaagcct tgtcatctaa gcattcaatt taaatacctc
      121 tcagtttatt tttgaacact ggaagttaat aataaatatc atctttgttt tctaattttt
      181 ttactgagtt gatttaaatg ctcttgacag ctccaatcca atcctcccat ccaagctgac
      241 aagcatgaca tgcatctctg catacaagct ctcaattatg cataatccaa tgttttctag
      301 ggttttaatt gaatcactag tctcaaactt gttattttta atttacaaca tttgatttct
      361 gacaccggcc cctctatgtc ataaattatg caggcaagag ccttagttgt gtgggtgatt
      421 aaaaaaaact aattaggcat gattaaaaaa aaataaaaca gagaccactt aaatatgtgc
      481 atgttaccat gtaagagagg cttatttcac tggaaatgcc tgggtgattt tttttttaag
      541 agattatgtt cagttcagta caatttgatt gattttgaca gaaatgaaag aaaatgtagg
      601 attttttctt cc
//
LOCUS       KCLJ01001379             769 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 154051cal ultra-conserved element locus
            uce-2860, sequence.
ACCESSION   KCLJ01001379
VERSION     KCLJ01001379.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 769)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 769)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..769
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="154051cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>769
                     /note="ultra-conserved element locus uce-2860"
BASE COUNT          217 a          171 c          131 g          250 t
ORIGIN      
        1 aggttccatt ctttgtagtt taggtaatgg atttaccata tgtttatgct ttaaggactt
       61 gtgtaagact gctaacacct attcctccac ctcctgtctc aggggttaag accttggtat
      121 gttgccagtt tactgctgtg gtcccttccc cttctataat tgcagtcctt cccagagcga
      181 aggaaattcc ctgagctctt gctctaacta gcctcaatgt ttccctacaa aaaggcactt
      241 ctttaaaagt aataaaactt tcacattatt aactttttcc cttttaaaag aggctgaaaa
      301 atgccattgt accacattaa agacctttac ataagactca ccattggcta atgagccttg
      361 ttgtacaatc taccacatgc aactgccttc aagtgctgct tttaacttaa ccttgatgta
      421 gtgccaggaa tgtgcaaagg actttgatgg caggggcagc cctctccctg ccttttccat
      481 attgattctc taacatttga gttttttaac ggagcagcta ctttatatcc tgtaaaaatc
      541 acctacccta tagaaataag caagaggtca gttgtttata gcagaaatga taagaaattg
      601 ttcatacttt gtacttgtgc agtgactttc ttcctggaga tacagagcac ttcataagca
      661 tcctcacaac tcccctgtga agaaagtctc ataatctctg ctttatcatt aattgcagtg
      721 aatttccaga aggacacaga atatcaacag gatctgaaga atttttact
//
LOCUS       KCLJ01001380             674 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 154160cal ultra-conserved element locus
            uce-1718, sequence.
ACCESSION   KCLJ01001380
VERSION     KCLJ01001380.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 674)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 674)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..674
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="154160cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>674
                     /note="ultra-conserved element locus uce-1718"
BASE COUNT          240 a          124 c          119 g          191 t
ORIGIN      
        1 accaaaatag ccaatagatc atttaggaaa aaagagcaaa agattttttt atgtgtgtct
       61 gtccttgtat aattctattc tcactgtgaa atcatccata cacaaaacac aaggacaatt
      121 tttttttttt tttagaagaa ccacagggta ggttacagtc agaaacggcc tctcagtggt
      181 gtgttaaaaa ggatggtctt ttcaccaaat catttcacag aggcaaaaca gacaaacaca
      241 aagagttgag actttttctc ctacattaaa tagagtaact gataaggtca gacatatgat
      301 acctaaagac atgaatctgt gaactcttga agtcaaagga cttctctgtg caaaggaaca
      361 atctttcaaa ggaaatagat catagaactc cactgaatcc cctttaaact ttatgaagca
      421 ggaggagaaa aagctctaag tagggaagct tgacagaaga gccttgaact attttctgaa
      481 ggaaagatga gaccctccct aggctgccac aaaacatctt tttttttcta aaggctcttc
      541 tgaactttga tatgtgccaa gacaccgcta ttgaaagctg tataattatg tgctatagcc
      601 actgtagaaa atgctttgtt caccacaaca aagaacaata agcaaagtaa agtgacatta
      661 cactgtatct tttt
//
LOCUS       KCLJ01001381             491 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 154269cal ultra-conserved element locus
            uce-5007, sequence.
ACCESSION   KCLJ01001381
VERSION     KCLJ01001381.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 491)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 491)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..491
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="154269cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>491
                     /note="ultra-conserved element locus uce-5007"
BASE COUNT          146 a           90 c           93 g          162 t
ORIGIN      
        1 aaaaatgaag tggcctttaa tacacaactt gctctgggct gttgcttggt gtgaaattaa
       61 ggagctcact ttccaccatc tctcttctgt ttctaaaaac tctcacttgt taccaagcat
      121 cccataactg tgtttccaac aaagattaca ctgatatttc tgttcagcta catgtcctgc
      181 agggctgttc tgcggtcttc tgatcagtaa aaatgtaata acattttcac atagtcaata
      241 tttaattctg taaatgcaac tggtagttgt aatctaggtt attaaccaca cagtgattta
      301 tgagggaggg cagacagtga aggggtgcag agcactagga aggtcctctg gtgacaataa
      361 aaaagttata aatttcatag ctctgcctga gaaatgtatt tatatcctat attaagaata
      421 gctttttata aattttaatg atccatgtta ttaatggtgc tgtcatcatt actgcctgtg
      481 caagactgca g
//
LOCUS       KCLJ01001382             505 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 154376cal ultra-conserved element locus
            uce-7122, sequence.
ACCESSION   KCLJ01001382
VERSION     KCLJ01001382.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 505)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 505)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..505
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="154376cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>505
                     /note="ultra-conserved element locus uce-7122"
BASE COUNT          152 a           96 c           90 g          167 t
ORIGIN      
        1 acaaccgtac tgctttgagg tttctttcac attaagctac atttaatatt catttcactt
       61 tttttcctat taattaaaag taaaccgtgt attgtatggt acattatccc tctaacagcc
      121 ccatgtggag atcatgaagt ggaagactaa tggtgtagac tttagcattt agttttaacc
      181 aggataattt acatatctgt gagaagagtc cgaggcatgt gtaaataagc agaactcgga
      241 gatatcagcc ccgtgctctg ctctggactg gagagccaca tttattccat cactcagcta
      301 atttaatgag actttatcca gcatccattt ctgcagaaga cacaaaactt attattaagg
      361 agaggcatgt ggcagtaaga aaaatgtgtt tgtttgcttt tttattctat tacccccaag
      421 tagcaaaggt gatcccattc actgttcatt aaagtttacc tttataatta gcccgatatc
      481 aagagcttta tgctgagatt tcaaa
//
LOCUS       KCLJ01001383             366 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 154481cal ultra-conserved element locus
            uce-3915, sequence.
ACCESSION   KCLJ01001383
VERSION     KCLJ01001383.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 366)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 366)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..366
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="154481cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>366
                     /note="ultra-conserved element locus uce-3915"
BASE COUNT          109 a           59 c           68 g          130 t
ORIGIN      
        1 tttttgatat tgcttattgg agcgttcttt aaagatatta ttagctgcca atatccccca
       61 tgggtttgtt ttttaatgta tctgtgcagt gctacagtat gctgtttctg ctggtgatat
      121 gttgctaaga gatttaataa tgggtaaaca aacacaacat gtggtaatcc ttttcaaatt
      181 aaaagtttat taaatgctag cttgatgact ttctggctat ttacaattaa aagaacaaac
      241 cttagagaac tggaggtcac gtggtgaaaa tcacaaccaa cgttttcagc aggtgtttat
      301 gatctgtggc aagctgtcac acattgatat gtcctataaa ttcagtatta tatctgttaa
      361 accacc
//
LOCUS       KCLJ01001384             636 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 154590cal ultra-conserved element locus
            uce-323, sequence.
ACCESSION   KCLJ01001384
VERSION     KCLJ01001384.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 636)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 636)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..636
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="154590cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>636
                     /note="ultra-conserved element locus uce-323"
BASE COUNT          187 a          116 c          112 g          221 t
ORIGIN      
        1 tcagaagtag agatttgcct tagcaccttt atccattcaa atattaaatt aatttttcta
       61 attaatgtta tcttttggtg ctaagcattt tcaaacagtt gaatatcaca gtatagttga
      121 tgcactccca tgttatcaaa taaatgctca aggtacagct tataatgttg aaaaatagaa
      181 aaataaattg accttgatga agtgtgtctt cttttgtctg ttcccaggaa agtttatttc
      241 aggtatttct actgctgaaa tgattagagt taacagcttt ttccctccat tttattttac
      301 agggtctctt catcttcctg atatatgggg tgtacaacac agaggtaagt ctgcttggag
      361 tatctcaagg ctgacagagt gaatgagaga aatgacaggt ttcttatctt gataactgag
      421 ggacaaagtt ggctttccat acgagtgtcc tactgccctt catgcttgga ctggcttata
      481 tgcatcccag cttaccatta aacacagaca ccctgaataa agggacagac tcatttctca
      541 taggcattga ctaatatttt actgcttttt ttgaattcct ggtctaacac ttagctaaac
      601 ctgacagtcc tgtaattgaa cgtacatttt gaaatt
//
LOCUS       KCLJ01001385             481 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 154698cal ultra-conserved element locus
            uce-7978, sequence.
ACCESSION   KCLJ01001385
VERSION     KCLJ01001385.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 481)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 481)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..481
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="154698cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>481
                     /note="ultra-conserved element locus uce-7978"
BASE COUNT          133 a          127 c          117 g          104 t
ORIGIN      
        1 gatctggttg taatccagtt gcctgttaaa cagattagga aggcatttgt aaggggctgg
       61 caaggcgagg tggaagggaa gcctcccgaa ggacgcgagc ggaaaggctc tggccatcgc
      121 tgccaccgct cggctggcct gcactctgcc accgaaatcc ctttttgttc tccactggct
      181 gcgcagaaca gcagcgctgg gaaagctcca gtaaataata actgcacctt atattaaatg
      241 ccaaaggaat gcaatttcat tacatcaaga aaagctatcc attaaaagct ctcagcgtca
      301 tctcgctgaa acaatttcat taaggtaaag gacggtaaat cacttaatgt cacacgcatc
      361 ccctcggtga cctaacagaa tccatttatc agagcagccc agctgcatgt taattccacc
      421 cgccgcagca gggaccaggg acagacacca gttttagggg tctccccatg cctggagcag
      481 g
//
LOCUS       KCLJ01001386             718 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 154808cal ultra-conserved element locus
            uce-1835, sequence.
ACCESSION   KCLJ01001386
VERSION     KCLJ01001386.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 718)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 718)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..718
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="154808cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>718
                     /note="ultra-conserved element locus uce-1835"
BASE COUNT          218 a          129 c          155 g          216 t
ORIGIN      
        1 agtagaaatg gcacattaaa tagtgctttt tttgtattac ctttcttttc atgacatttc
       61 gttacagcag cttttatgca cttagaagta aattaaattt caaaataact gccagctagt
      121 aaaaaactgc aaatgttccc tgtattttaa taaacaaata aggacatttg gcaaaattgt
      181 aaagtttatg aaatgttttt ggtagcgagc atgatatttg gttgtttagg taagtgcctt
      241 actaagtgtt tgtggaaagg aaaaatgcaa cttacaagtg atcttcttgt ttgttctctt
      301 taacagaaag ggttcaaaga caccagtcag tatgttgtag gagaattggc agcactagag
      361 aatgagcaaa agcaaattga cacccgtgcc gcgctggtgg agaagcgcct tcgctatctc
      421 atggacacag gtacggtgcc caattacact gtaaacagtt ttggcaaatt gagcgttcac
      481 aaactcttat agagttttgg aagtgtgaat ctttgaagcc tgaatgttca gcaaaactgc
      541 cttgaaaata aaaaggctgc gatttgcagc cacctctctg ggccctggtg ataagagtgc
      601 cttcatggga agtgataact tgccctgata ccgtgtgagc cagcactatt gaacagtgtg
      661 ctcatccatg cagagttgga atacacatct gtgcctcatt gatatgccac tgcttaaa
//
LOCUS       KCLJ01001387             693 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 154916cal ultra-conserved element locus
            uce-5062, sequence.
ACCESSION   KCLJ01001387
VERSION     KCLJ01001387.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 693)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 693)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..693
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="154916cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>693
                     /note="ultra-conserved element locus uce-5062"
BASE COUNT          185 a          133 c          139 g          236 t
ORIGIN      
        1 ccccaaggta aaatattcaa aactgaaaat gcagctggag tttagttttg aaaccggttt
       61 tgattgttag tgctgtcatt aactctcctc tttccagatg tttcatgaat cacactttct
      121 gcatatgtgg gctgccctat acacccttat tgttgcaagc tgtcccagta aagacttgca
      181 gcaatgccat atcccccctg tgaacacagg ttatttcaag cttttgtcag tggcaaccac
      241 tcttatgcag caactggttt tggagtgctc cctgatgtca gtaccacctg gatgtggacc
      301 tttgctacct gtaataatac cagtggcctc atttgctgta tcattacgat ttggcttctt
      361 atgttaataa gtttgaaaaa gaaagctggt gttctagaag ttgcccttca ctggttgtgt
      421 aaataaaaat gtagaatgac acttctgact gaagttagtg tggttttcat aactgtgcac
      481 tacaacagag ctgtaaccac agttaagtta gaatgtaatc ccaggacaat tttaagcaaa
      541 tagcccacag tactgcctgt gaaatagtga aggagggcat ttctgtattc catgacgggg
      601 gttaagaatg ggtttatatg atttctcatt tttgtagttt ttatttattc tatcagtctt
      661 taacaaatgt ttattgctgc aatttttcag tgt
//
LOCUS       KCLJ01001388             433 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 155029cal ultra-conserved element locus
            uce-7318, sequence.
ACCESSION   KCLJ01001388
VERSION     KCLJ01001388.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 433)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 433)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..433
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="155029cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>433
                     /note="ultra-conserved element locus uce-7318"
BASE COUNT          153 a           83 c           77 g          120 t
ORIGIN      
        1 aatctttgct aatcgaatac cacaaatgtg tattttgcag atgaaaattc atatactcac
       61 aagcaaagca tagaggagat tctgacaaat acagatgtaa ttgtgtgggt ttctaagatg
      121 tgattagcaa atcaactaag taacagtcaa aatttgatac gcagcacaga tttgaatatg
      181 tttatgcaaa gctaatctgt caagtgtaat aaagcagctt gaataaaatt taagctgaaa
      241 atccactgaa gctccccatt tcagggagga aaagctatta aaaggaaatg aaggtcaccc
      301 tcccagttta tttcacctaa ttgactgcca atagcttacc acaggcaaac cgactgcaga
      361 tctgcaattg agaaactgat gaaaggagca ttttcaagct gaggctcatt cttttaatcc
      421 tccctctctc cta
//
LOCUS       KCLJ01001389             774 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 155137cal ultra-conserved element locus
            uce-6866, sequence.
ACCESSION   KCLJ01001389
VERSION     KCLJ01001389.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 774)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 774)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..774
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="155137cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>774
                     /note="ultra-conserved element locus uce-6866"
BASE COUNT          234 a          163 c          130 g          247 t
ORIGIN      
        1 gcagagatgg atccaaaatc taatgacacg catgaaaatc cattttggat cccccatcag
       61 aactctgtat tatataatca gcattttctg agtatcttct attgtttgac agccctgatt
      121 tcacactgaa cttggagttc atttctgttt ttgtatagaa acttttaatc atatctttat
      181 gtgaacacac acataccatt gaggatattg tcttattaaa gagtttaagc ctaaaggtgt
      241 atgcctactt ttaaaagaaa ttttctgatt gtagataact gctcaatttg atttagtgtc
      301 caatgatagt gatggggttg ataactgagc attcatcggt aattcatctt gtgctagtag
      361 aaatttacag caaagcagtg ctttcccaac actgacaagt cctattaatc ttcttcagac
      421 acatttcaat aggtgtctcc atctgtgccc aacatctaaa cactctggca tcactgggga
      481 cttggagaca ccttcatttc aggttacact agtgaaaatg tgatactaga ttgtactcta
      541 tttttaacct aattctctct tttcattcaa ttagcctttc ttgcctgcat ttttctactc
      601 atgtgtaaca tccttttccc aggaatagct taaaaatgag atttagttac ttaaagagac
      661 agaatctgcc agggcaagag agaaaagcag aataacaaag ctcagggaca cagcgtggag
      721 accgaattgc cactcaccaa acacgtcccg agcagcattc ccacaatatt cccc
//
LOCUS       KCLJ01001390             575 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 155250cal ultra-conserved element locus
            uce-1061, sequence.
ACCESSION   KCLJ01001390
VERSION     KCLJ01001390.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 575)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 575)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..575
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="155250cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>575
                     /note="ultra-conserved element locus uce-1061"
BASE COUNT          198 a           92 c          108 g          177 t
ORIGIN      
        1 aaaccagaac tgctataatg taatcagtta caagctgaaa attatatttt gaaaatcaag
       61 tttattaata tgtaatcttt aggtaatcat atttatcctc ctaatttaca caatatttat
      121 gatagtctat atgtccttga aatagggaac agggacacta cactatgaaa aagtggtcta
      181 gctgctggag ttcataaatt ttgttcagct ttggatgagt tcaaagaatt gccatgtaag
      241 aaaagcctta cagagggaat ttatctgatt atggcagtaa taattaccca gctgtttatt
      301 gcagatagag aaataattca tgtaggcaat aggccgtggt ggcaatgaca ctccgcattt
      361 agtaaatatg caaactgttc atttctaatt aaccaagcta gaggatgccc ttattaaatg
      421 tataaactaa aagtgccttc ctgacaagtg atgaattgtt acattgcaca aactcttgcc
      481 acagaattac tggagtgaac ttggggctta acttcattaa gagatcttct gggatagtta
      541 aatgaggatg gacagcataa caagacctac ctgac
//
LOCUS       KCLJ01001391             750 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 155358cal ultra-conserved element locus
            uce-3069, sequence.
ACCESSION   KCLJ01001391
VERSION     KCLJ01001391.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 750)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 750)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..750
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="155358cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>750
                     /note="ultra-conserved element locus uce-3069"
BASE COUNT          178 a          155 c          163 g          254 t
ORIGIN      
        1 gcaccctggc cttggcagtg ggcttaccta gttccagcag aagccttggg ttaaaatcct
       61 atggtttaaa acctgctgag gccaatctgg acttaactgc ctcataactc ctgctaagcc
      121 tgtgcctgat gagctgctcg gagctggatt ttccctaata aattcctttt tttgaaccca
      181 cttgttagtc aagcattgtg cacactaact acagcgaggg ccctgggcat aaattactct
      241 cacgtggcac tgtctctgag cagcccccca gttatggatt actttgttct cgacttgaca
      301 ggaacataat tagaactgtt gatgaaatct accaaattgt tcctccgtgg cctcaatggt
      361 caggaaattt ggctgagtcg tatttgtcac cgacgtaaag gctctaaaca cttcatatta
      421 actatgttat taatgtgccc tctaatctgt ccgtgaattg gtaacacttg gagggagctt
      481 gtgctctaat agcaccttgt gatgaattca ttgtaatgct gttcaaaagt ttctggaggg
      541 tataaaaagt gcatattttt aggttgtttc ttttctgtat atgcattttt atgttataca
      601 gttttgtttt gttttgctta actggagatt catttaggct ttacattgac agaccctttt
      661 ctgttctata ggatttgctg acatttgggc tgtttcattg ccagaggagg ctttgtgtgt
      721 cccaaaggaa gtgagtgatc tggccataac
//
LOCUS       KCLJ01001392             576 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 155467cal ultra-conserved element locus
            uce-4830, sequence.
ACCESSION   KCLJ01001392
VERSION     KCLJ01001392.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 576)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 576)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..576
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="155467cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>576
                     /note="ultra-conserved element locus uce-4830"
BASE COUNT          206 a          110 c           89 g          171 t
ORIGIN      
        1 agttttgcag taataaaaat ccaaaggcag tgaactttgt aaagcacatc tcagctttaa
       61 cacaccaaac aacatattac agtgtaaaat aaaagaatca ttactactta tttttgtaac
      121 tggaacaatt taagcataaa cacacacaag caaacaaata gctatcatgt ttttctttcc
      181 cagtaagcta agaaagaacc ttttaatagt ttaattttgt gagtattaaa caactagtgt
      241 gaaaaacaag ctgcatgtaa actatttcta ctgcctctgc ttcaatgact agctgaggca
      301 acctgttata ggaggtgtta attggcaata ggagtacaag tcagaagcat gttccccatc
      361 gtcctaaccc agcaaggcta ggtcattaaa gtggaaatga attctttcat gccgacttaa
      421 ccctttcact acatattttc agctgttata tccaaagaca attgacaaag attagctatt
      481 tattaatcct tttttcttca ctctacctcc tccagaacaa gtgttccagg taaagatgac
      541 tatataggta aaaaggcaac tgaggtataa atgcaa
//
LOCUS       KCLJ01001393             754 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 155578cal ultra-conserved element locus
            uce-6106, sequence.
ACCESSION   KCLJ01001393
VERSION     KCLJ01001393.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 754)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 754)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..754
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="155578cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>754
                     /note="ultra-conserved element locus uce-6106"
BASE COUNT          233 a          139 c          151 g          231 t
ORIGIN      
        1 agaagatggg tcataatagc taatgtagta ggcaaggagg gagaatggag cacaattccc
       61 taaactcgat aaaataagca attactcttg ttatctgaat ggctctgtca gtggagaagt
      121 tgtctgtgtc ataacagaat ctaacaaagg ctgttgcctt taagcatcaa aggctttggc
      181 cttattatct ttctaagatg tgcatgtata ataagttttc ctaacaaatg gcaaggaagc
      241 atctctggca aaatataaaa tggtgataaa ctatgtccaa atgattaatt cacagaaatt
      301 ctccatcaca ctgcagctac atgtgcccgt ctcttctgtt atgcccttgg agattttcat
      361 actaaacgta tgtgcatatt tttcatggcc actgatattt gaattgcagc ctgctcccat
      421 gcagaacata aaacacttca aactgcataa tgctgactaa attataagtt ctccagtggc
      481 ctgaggtagc aagggccata ataatgagtg tgcttaagtg gtttgtgcag actttaattt
      541 taatgcccta acttgctgct gccttttcta aagctaggga ttgtctcata caatcataac
      601 aacagggaaa tagaaactgc attatgtttt gaaaaaatgt ggcatgcaaa gcagaagctc
      661 cactcacagt gatagctgat tcagccctgt tggtcacatg gatagaaaat gctttggtga
      721 ctttgtccat acttgtaatt atatttgagc tgtt
//
LOCUS       KCLJ01001394             515 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 155684cal ultra-conserved element locus
            uce-2770, sequence.
ACCESSION   KCLJ01001394
VERSION     KCLJ01001394.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 515)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 515)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..515
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="155684cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>515
                     /note="ultra-conserved element locus uce-2770"
BASE COUNT          195 a           93 c           70 g          157 t
ORIGIN      
        1 ccccaggaaa aacaaccacc cagacctttg gcatataatt agcacacaag taagaatttc
       61 tgaaaagtaa ttgttcataa caataatggg aatgcttttt gcattggaat gaaaaacaat
      121 cactgaattc tttgcatatt ttatttttct ttttgatttc caactcacac acatctggca
      181 tattttacat ctttgcaata aaacatggtt acaatagctt aaggaattta tatatccaaa
      241 atatttcacc atgatctcaa gatgaaatga acttgtcttc cagatgttca atagtctccc
      301 aattctaagc tacaaactca agatattgct tacagacagg tgatgaataa cttaatcatt
      361 acgttttgat ttccggacct tataaataca aacaacaatg aagaaggaaa ttcagggcta
      421 aacttactaa tacaaggtgg ataacaaata agtaatcaca tcaataaata atgatatgtt
      481 cctggtgcaa agtgccaata caaagaatcc attat
//
LOCUS       KCLJ01001395             354 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 155795cal ultra-conserved element locus
            uce-5250, sequence.
ACCESSION   KCLJ01001395
VERSION     KCLJ01001395.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 354)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 354)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..354
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="155795cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>354
                     /note="ultra-conserved element locus uce-5250"
BASE COUNT          106 a           65 c           65 g          118 t
ORIGIN      
        1 tttaatctgg attctgttct cttctcaatg tcagcctgtt tctggaccgg tacagagcta
       61 gccttgttga tgcaataaag agattactcc agcccagtgt aagtatgttt ctattttctc
      121 ctgaacactg gcttcagaat aattagtctg tgcacaatga ttgagagagt aatggaatgg
      181 caggattaat gtcatgtaat actttaatac ttattatgtc caacttcaat tgagtcttct
      241 aatctatcag attctttcct aatcataaac taggaaactt cttatacttg gccttctgat
      301 aaggaacaca gtgggtagta aaataaatga aaccgcttca aagatagcgt caga
//
LOCUS       KCLJ01001396             717 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 155893cal ultra-conserved element locus
            uce-2037, sequence.
ACCESSION   KCLJ01001396
VERSION     KCLJ01001396.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 717)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 717)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..717
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="155893cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>717
                     /note="ultra-conserved element locus uce-2037"
BASE COUNT          203 a          119 c          147 g          248 t
ORIGIN      
        1 tttttaacat attatcttta tcctctgcaa tcattgccag ggtgatgagc ttagcataaa
       61 atccaagctt ttatgaggca gctgactagg gatttagaat tttccctttt cagcttacag
      121 aaaatcgtgt aatctcatgc agactatttt ctctttttct atatcaatcc taaattaata
      181 cagtaggtgc tctgcagcca gcatggtttt gcattgatct tggccagctt gtttacagtg
      241 ttttggcaag ttgctgatgt acttctccct ggggatagag caggggttaa ttgctgttaa
      301 actctcagtg ccaagtaatg gttcagactc tgtgctacat taaagatgac actaataagg
      361 aaagagtgca ctggattgct ctgtgttgaa aattggactt gtggtgacag aaacttggag
      421 cggagctgat gtaataggga ggccataatg taattataac tcctgaacat gtgtcatacc
      481 aagttaaatg atacattaat gaatcaaaac aggtgatgga gtgttgctct ttcagcagat
      541 agaggtgttt tcaaggtcaa attgtcatta atctaataat ctgtaaactg tatatgcttc
      601 aaattataag caaaatcatc tttaatgggt gtatttcttg tcctgtacca aagggaccag
      661 aagatgctgt tctcagtgta attttgttta tccctctgtt attatatttc tgttata
//
LOCUS       KCLJ01001397             688 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 156000cal ultra-conserved element locus
            uce-273, sequence.
ACCESSION   KCLJ01001397
VERSION     KCLJ01001397.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 688)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 688)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..688
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="156000cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>688
                     /note="ultra-conserved element locus uce-273"
BASE COUNT          220 a          135 c          142 g          191 t
ORIGIN      
        1 caagcaagcc ttggcactta gtgcaattcc attttaagag aaattccttc acaactgttt
       61 gtctttgcaa taactcctac aaagctcatt agtgccagcc ttggttcatc ccccatgttg
      121 tgcatttatc tctgggatgc attatcaaca tgtggcacat gtccttgaca tgcacagaag
      181 agttgcaccc caggatagca gcatgcatga caatagtgtt gactcttact cctttatggt
      241 tgctgggatg taaccgagaa atctaataac tgtgacagta ggcctttagg tttctccttg
      301 cctttccaga cagtgaagct gcacagacac taatgaaagg ttaaatgaat aggaatagct
      361 gacaagaggt acaataaaga agggacttgg taatccacag acactgagca gagatccttg
      421 gctcaagccg agaaaggaca gcacatcgtc aagtcacaat atttaaaaca gcttgctata
      481 cacagaggct tttgtgtctg ggtacgtgtc tggctttgga agaaaaaaaa gatactgaaa
      541 agaaatttca gcatggggca ctttggcaaa tgtcaggtca caaatgtttt ttgtttgctg
      601 ttacatattt gtattcaaca aagagcattg actaagagca caaatcagaa gttccaaaat
      661 aatacatatt tgacaaattt aataaagt
//
LOCUS       KCLJ01001398             824 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 156110cal ultra-conserved element locus
            uce-1988, sequence.
ACCESSION   KCLJ01001398
VERSION     KCLJ01001398.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 824)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 824)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..824
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="156110cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>824
                     /note="ultra-conserved element locus uce-1988"
BASE COUNT          208 a          161 c          195 g          260 t
ORIGIN      
        1 tgtcttgttt tatgagcaag atcctgtttt tctatttcgt tttctttgtg cttttggtaa
       61 ggacagatct ggctctttgg atactaaata ggcaactaat tcaattggtg ctttctccta
      121 gggtctgctt gcaaaccagt gccaggctca caggctcttt gtgtactgcc ctccctgcat
      181 gtgtctgtgc tcccctggct agtcagtttt ttgtctgtga tggttaataa gctttgagcc
      241 tagtagtcaa atgtggtggg aacggggaca agacgagggt ccttagtgaa ggtgtttgtt
      301 gttaaataga acaattcagc tgtctcttta gaaaacttga caaaaggaaa tgctccctgc
      361 tgaaaatttt cttagcctgt tgcacaaaag atgaagtttg tttaagaaat tgctgctaaa
      421 gaaagcgtca acccattaag gtaattatat ggaacctgtg ccgtataaca gcttaattga
      481 tgttaatgtt tgtctaattg gtgattggga gagtgcaaag gactaaaggt cttcatagca
      541 ctttcagtca cggctctgaa aggggttctt ctggttttca cagttataac aatgcctgcg
      601 cgtctttctc agattacgcc ttgttttcag ccccttacag cattctgctc cactacttaa
      661 agcgtaaaat aagggtgaag agccattgtc taatgcagcc tttttcaaag agtgtttctg
      721 acagggattg ttctaggaat caggcaggag agaagggagt gtgagaggtg aaagccacta
      781 tcacccactt gtgtcacatc cccaatgagc ggcaagagcc gcct
//
LOCUS       KCLJ01001399             587 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 156221cal ultra-conserved element locus
            uce-6049, sequence.
ACCESSION   KCLJ01001399
VERSION     KCLJ01001399.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 587)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 587)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..587
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="156221cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>587
                     /note="ultra-conserved element locus uce-6049"
BASE COUNT          125 a          162 c          127 g          173 t
ORIGIN      
        1 tgttagtgca gttagaaccc cgggccaatc tgattaattg gaattaagat cttctggtcc
       61 agaatgtcat ttagaaattt gtttgatggt tgtttccttc taaggtttga aaatgacaat
      121 gttgcttgtt tcctcattct ttttgaaccc tcgttcctct gcctagacct ggttaaccat
      181 ttctgtgaac aggtcctcaa ttttttactt tgtccctact ttcctgtcgt agccccatct
      241 tcccctggtg tcgactccgt acccttacag cgcacaggca gccagcacgg cacacagaac
      301 gcaaccgcga ccttccagag ggccagctat gcggccggcc cagcctccaa ttacgcagac
      361 ccctaccgac agctgcagta ttgtccttct gttgaatcac catacagcaa atctgggcca
      421 gccatcccac ccgaagggac cttggctagg tcaccttcca ttgatagcat tcagaaagac
      481 cccaggtggg tgaaaccttc ttcactttta tttcccgctc gcgctgacgg ttgtaatggc
      541 ggttgctttg cgtgtttctg ctgttggata ttggtggtac acgaaaa
//
LOCUS       KCLJ01001400             480 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 156330cal ultra-conserved element locus
            uce-253, sequence.
ACCESSION   KCLJ01001400
VERSION     KCLJ01001400.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 480)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 480)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..480
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="156330cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>480
                     /note="ultra-conserved element locus uce-253"
BASE COUNT          129 a          101 c           81 g          169 t
ORIGIN      
        1 attgtcctta ttaagtctgc ctcagtgttt ttgctggatg agtgctcttt gtttctggaa
       61 ggcagagaag atgcaggcct ggaaacacca actagtacaa gtccacctct catttgtctc
      121 acttttataa ctttgaaact cttccttcac tttggtaata atgtaaagta tcaactaaaa
      181 atcgcaatgc atgcatttca tttgagtttt attgccttaa cagacagcat tagattacaa
      241 aagaggacat ttttcttctc agttttagct tattcttatg atttatgatt agatacagca
      301 agagttcata aacttccccg acctgctgac agtttttaca ggctccttga tttatttcca
      361 tctcaaactt aacagctttc atgtgactga tattcctaga gtcctggcat ggctgcagca
      421 cagcctgcaa gagctcctct aatctccatg ttactaattt aaatgaagtc ttggtctgtt
//
LOCUS       KCLJ01001401             445 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 156438cal ultra-conserved element locus
            uce-5646, sequence.
ACCESSION   KCLJ01001401
VERSION     KCLJ01001401.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 445)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 445)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..445
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="156438cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>445
                     /note="ultra-conserved element locus uce-5646"
BASE COUNT          129 a          102 c          118 g           96 t
ORIGIN      
        1 ccaaggatta cttttgcagt gcacacacac acgaagctca aaattttttt tacagtgttc
       61 cagctctggc tacggcagga gcaaggacct gcacccccgg cactgtgcca tcagattcaa
      121 acagggaaaa ccattaccct agtgtcttct aactccctct ggagtttgtc agctttggtc
      181 ttttcaaaga gcaggctctg ttcaagctcc ttaatgcggg catgctccag tttggtctgc
      241 gtctgttagt ggagagggag aggaagagaa cacaacggtg ccaccatcac atgccagcac
      301 aagaggagga gccacatgca ggccgtgctg ccagagcctt ctggtgagca gagaggatgc
      361 aaggggacag gaaaatatgg atgaggcaaa cggagaaaaa aaaagtttca tgcagctgag
      421 tagaagagca caaattagaa tagtt
//
LOCUS       KCLJ01001402             471 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 156539cal ultra-conserved element locus
            uce-4832, sequence.
ACCESSION   KCLJ01001402
VERSION     KCLJ01001402.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 471)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 471)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..471
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="156539cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>471
                     /note="ultra-conserved element locus uce-4832"
BASE COUNT          150 a           76 c           80 g          165 t
ORIGIN      
        1 tactcagttg tcagaagaca caaactgatc cgaattcact ttacaaatat taatacagac
       61 ccggaagata aatgtatgtg aaccctgata acctcctgta acattgtgct gccttgtaga
      121 tggtaatgtg agttctctca gtatttatgt tgaaatttct aacattcaac ctagtcctta
      181 ttctgttaat ttaataataa aagatgcttt atccatttgt gcaaaggtaa acgcagattg
      241 tatctttttt aatggtacgg cataaaaaaa gtaaccctta aatgaagctg ctctattact
      301 atagagtact ttaacatgta tagatatctt gtaaacttgt attgtggatg tgtaaataat
      361 acgttctttg ggtttttaac accgcatgta aagtcaaaat aaaatattcc catgtataat
      421 ttcattattg gtgcagttac tgtggggaaa tctctgtttg cagcagctct g
//
LOCUS       KCLJ01001403             553 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 156750cal ultra-conserved element locus
            uce-5906, sequence.
ACCESSION   KCLJ01001403
VERSION     KCLJ01001403.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 553)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 553)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..553
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="156750cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>553
                     /note="ultra-conserved element locus uce-5906"
BASE COUNT          144 a          146 c          127 g          136 t
ORIGIN      
        1 caaggagcgc cacgtcatgt gagacgtttc atctccacca gtaacctcgg cactgtggca
       61 aatgaataca gggatacagc acagccagga gagatggaac gcattgaccg ctgcccctgc
      121 tcaccacaca aatgtcattc tcttggaatt ttttctttct tgttttcccg acacattttg
      181 gtcccctctt cgcttctccc cttttccctt aagtagagat gacacagatc aatacctttg
      241 atggaaagta ataatcaggc ctattaagtg acaaaggttt actctgtaac agctgtgctg
      301 gcgggagagg agagcttgtc tgactaatga atcatgaaac aatcaggcag tagccatttg
      361 tgtttagatc tgtaaatatg gtgtggttca agtgccagac catctccagc actccagctg
      421 ggggcacaga tggtccacat tcagcacagc acaagtgtaa agaaaagcct ccctccttcc
      481 cctgtcccac agtgcccctc ccaaaggaga gagcagccag cttggggatc cactcaggct
      541 gtgggcagga atc
//
LOCUS       KCLJ01001404             459 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 156860cal ultra-conserved element locus
            uce-2213, sequence.
ACCESSION   KCLJ01001404
VERSION     KCLJ01001404.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 459)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 459)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..459
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="156860cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>459
                     /note="ultra-conserved element locus uce-2213"
BASE COUNT          151 a           82 c           90 g          136 t
ORIGIN      
        1 taaagtgcta ttttttgatt ggaaatcatg tgacttaaga tgttatacaa ccgcttcaca
       61 tcaaatgata agcacagttg aaatcccatc agaattacct gtctcgcctt gcatttagaa
      121 ctgaagactg tccattcact atggaatgat gagttattgg tggtgatgct ttggaagtgg
      181 tggaggaggt agtagaggag gaattgttag tagtgaggtc tagccctcca tgtttaatgc
      241 cattgtcttc catactgtga actccagtca cttctttcca taactgctga atctcagcag
      301 gacttaagcc agctataaaa tgaaagagag ccccactaat ataacaaaat aaagagtttc
      361 atataatgag ctcagtgtta ttaatggatt aatgccaaca ataaagctga tgctgtttta
      421 ccagcacaat caacatgtag taaaaaaaac cataaattc
//
LOCUS       KCLJ01001405             816 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 156969cal ultra-conserved element locus
            uce-2211, sequence.
ACCESSION   KCLJ01001405
VERSION     KCLJ01001405.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 816)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 816)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..816
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="156969cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>816
                     /note="ultra-conserved element locus uce-2211"
BASE COUNT          247 a          176 c          162 g          231 t
ORIGIN      
        1 gcaatatact tgcaaatgtc tctaagaaaa agtgcttgga aatcctcatc gctcaatcac
       61 ctagcaacct atgttactgc tgctttcaat tttgaacagg cagccttcac attcaaagat
      121 gcaaactgat gcaactgtaa gtttaaagca aaacaaaaac aaaaacagag attttgttat
      181 ttaaataaaa tgcccctacc tttcttctga gagtacgatg gcgactgcac ttgagaaaaa
      241 gtaggttttt cttctgtgaa aaattcaggt tggttgtact gattcagggc catgtccatg
      301 tcagagtact cgcttttaaa cacgtttcca gggtaactac aggtataagg ctgattcacc
      361 gcccaggcct gttccatata tatgttgtta ctgtgcagga cctgagcatc acaactgctg
      421 taaccctgat tatcttcgat atatgtgcaa taatcagtgg actgcatgta gcaattgcta
      481 ccagcagctg ggtgcacttc atatatttct tgcatacagt agttcatttt gttagcctat
      541 ctcagcttct actttacgta cacacacaca tgcatacaca cgcaggcatg catacacatg
      601 ggtcgggaaa ggagcaatga atatacacca acaaagtcga ctgcaaaaca gcccgtttta
      661 cttcggagca gcacctgatg tgctaaaatc ctatttatat tgggacggct tgtgaactcc
      721 cctgccagtc aaacatattg ggaagcagat ttatgacagt caaaggtctt aatctgtgac
      781 tgtaagttaa ttccaaggga agatggcagt caggta
//
LOCUS       KCLJ01001406             420 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 157077cal ultra-conserved element locus
            uce-6413, sequence.
ACCESSION   KCLJ01001406
VERSION     KCLJ01001406.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 420)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 420)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..420
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="157077cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>420
                     /note="ultra-conserved element locus uce-6413"
BASE COUNT          137 a           68 c           95 g          120 t
ORIGIN      
        1 agggtattgt ttaaaaccag tgttaaaaga ctgagatatc agggggcaca tgacttctat
       61 gatggaactg cagatgggag ggaactgtga attggtgtac tctgacagcc aaaccgtgaa
      121 agaacggaaa gatcagaaat atttgaaaat gagatcatac agcatgtgaa ctatacagac
      181 atctcaacca tgtttttttt atgagaagtc ttactgacat ttgaaaagca gagaccggtt
      241 ccctagtctt aaggttgact gacatttagg ggcagcgtaa ggcatgattt ccttcccctc
      301 tttttaaatt gaagttttca taaattgggg tgaaggagaa gcctggttac atcttgcaaa
      361 gcattcacat ctgtgtagaa atatgaaaaa agtaacctgt gacattttaa acactttgct
//
LOCUS       KCLJ01001407             863 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 157186cal ultra-conserved element locus
            uce-1101, sequence.
ACCESSION   KCLJ01001407
VERSION     KCLJ01001407.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 863)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 863)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..863
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="157186cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>863
                     /note="ultra-conserved element locus uce-1101"
BASE COUNT          260 a          140 c          215 g          248 t
ORIGIN      
        1 tatacttaaa ggaaaagaaa ttctgcttgc tctaacatga aatgtaaaac tttgtacctc
       61 gagcaacaaa cccatctgtc aaagctagtc tgtaaagcag agccccgctg gatgatctga
      121 aaacagctgt gctgtattcc aggctggcaa gtctttgggt aatatttatc aatgcacaac
      181 gggttgcgta tgtgctgaga agtttagccc caaagaacaa gtttggaaag gcagaaggga
      241 atggagacct gccaagcctg ttggctggag tcatggacaa gagcaaggcc tgtctgaact
      301 gccactcagt ttttattctg cgagtttgca gggttggtga ttagagtggc tttcgcccaa
      361 ttatgctgtg attattccgc tgcactgtaa ttgactgggg agatatgcta atacctgtca
      421 tttgggatga taaaagatga gcggaggacg caatgcatta tttagctggc tgtgtgatag
      481 atgagggatg cgcagagtac tttaattgct gagaagagag gttaagctga acgaacggat
      541 gaattagaaa tgagtttttt tatggcttgt ggaaaagtga aataaaggga aatgtgcttt
      601 aaaactgtag cagcaggtag aagcaaacac gacaagacgc ggtcttttag gcagcttact
      661 ttcgtaattt aaatatataa gacaaaacac ggtttagcgt tcagtaaata atagtaacaa
      721 taatgataag aaatgctcgg tgagttcata tccttgccaa caaaatcgtt gtaggttttg
      781 tttgaggtga aatttggtta tttggaacct ttacaatttc tgttgcagtt cagaccttta
      841 aaacttcttc ctaagggctg ttg
//
LOCUS       KCLJ01001408             465 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 157297cal ultra-conserved element locus
            uce-2475, sequence.
ACCESSION   KCLJ01001408
VERSION     KCLJ01001408.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 465)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 465)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..465
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="157297cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>465
                     /note="ultra-conserved element locus uce-2475"
BASE COUNT          174 a           72 c           77 g          142 t
ORIGIN      
        1 ctatatgaag gcattatcac taaatctgaa aagaaaatat tacaggcaga aattataagg
       61 agaagtttat aaaacaaaga tatcctttgg cagaatatgc tcttataatc aagcttttag
      121 cataccatag tttaaaaaaa ataaaaattt tgcccacata tacactaata aaaataaatc
      181 tgtttccgat tactaactat gcagcacagg tgcttgtttg ttacgagaga ggcatgttca
      241 ttaattttca gctatgaaaa gtgcactgtg ccataaatat acaattcaaa atgtactgct
      301 gataaatgaa tacacagatt gttaatgtgc cagagtaggg tattgggcat aaaacacatg
      361 ccaaacagga gcacattggt gatgtgctaa tgcttttaaa tctgggttta atgtaggcac
      421 ataaccagct ttttacatta ttgcactaac ttttaccaga attta
//
LOCUS       KCLJ01001409             563 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 157405cal ultra-conserved element locus
            uce-1918, sequence.
ACCESSION   KCLJ01001409
VERSION     KCLJ01001409.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 563)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 563)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..563
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="157405cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>563
                     /note="ultra-conserved element locus uce-1918"
BASE COUNT          176 a           81 c          119 g          187 t
ORIGIN      
        1 gctaagtaga tttggtaaag aaggacaata aaacagcgaa acagttaatc gccgtgctaa
       61 ttatttgtcc tatttttctt aatacaaatt aaatgtttca cttggttaat gacaagtttg
      121 atcaaacagt ttcataaact gatggattga ctttgaaatg aattcagggg gaaaaaaatg
      181 acatgatgca gatttggcag agggccgtct ctagtgggaa cagatgccca acaaatttgg
      241 cgactagttt tgttctcttc tatctgttgc agttcacaat cctaatgaat gttatgttta
      301 aataacatga ataaagataa agtgaaaatg aattcaactc cagtttgagc agcagaatag
      361 aaatgagcaa actgtattat cttctgccac ctaatctggg ttgaatttcc tctgtatctt
      421 tttttgtttg ttgaagaatc cttttcttga gtctccttgg ccattgacaa ggtcttttga
      481 gatgaatatg aaaagataga tttaaaggtt aaggccaggg tcagatggtt gcagatgttt
      541 tgtgagagat tgttcggttc agt
//
LOCUS       KCLJ01001410             365 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 157510cal ultra-conserved element locus
            uce-3070, sequence.
ACCESSION   KCLJ01001410
VERSION     KCLJ01001410.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 365)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 365)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..365
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="157510cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>365
                     /note="ultra-conserved element locus uce-3070"
BASE COUNT          100 a           82 c           68 g          115 t
ORIGIN      
        1 cccaagaagt gttttatgta cttgtaggag caattacagt tctgtactgc aaggggagct
       61 gttggcacat aataccatga ttgtgcatta gatcatccac tggctcctgt aatatccact
      121 tccagctata aggagtcatg tttcaacacc tccgattccc tggtgctgac aagctaaaca
      181 acttgttttg tctctgtgag ctcttctctg gtgattaact gcttatggtg aatactaatt
      241 atatggaagt acagtacagt agagatactg tcctacttct ctctgtcctc ttcttgcact
      301 ataaattcag caagaagatg acatttttca ggaccacaaa taggtctctc acagcaaaac
      361 tacct
//
LOCUS       KCLJ01001411             529 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 157610cal ultra-conserved element locus
            uce-121, sequence.
ACCESSION   KCLJ01001411
VERSION     KCLJ01001411.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 529)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 529)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..529
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="157610cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>529
                     /note="ultra-conserved element locus uce-121"
BASE COUNT          162 a           67 c           99 g          201 t
ORIGIN      
        1 cctttgttaa atgtatggat gcagacgcct tgatgaagat cttaaatttg gttaaaaaaa
       61 tagtgaaaat gtacaaaata tctatcacta ctgataggag gtaatatttc tgtgtagaaa
      121 tgaaaaaatg gtttgttttt agtattagtg tagatgtaca cattccagca aatgtatttg
      181 caattatgtg gtcaatgctt tgtgatataa atgtactttt tcaatgtata ctttatcact
      241 tttaaaatgc ctgttttgtg ctttacaata aataatatga aacctcctgt gtcggtaagt
      301 tggatatgtg ggtatatgca ggattatagg attgatttgc aacgctgaat caaggtaccg
      361 ctacacaaat ataaaccgtg ttgagtttaa aaacttgtca ttagcatgtt tttcttgcag
      421 aatagctgta gatggaggat ctctttcatt cattgtattt tgctgccagt aatctcgatt
      481 tttttttcta cttgattaaa actgcatgtg tttaagaaga tgatctttt
//
LOCUS       KCLJ01001412             480 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 157715cal ultra-conserved element locus
            uce-980, sequence.
ACCESSION   KCLJ01001412
VERSION     KCLJ01001412.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 480)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 480)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..480
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="157715cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>480
                     /note="ultra-conserved element locus uce-980"
BASE COUNT          169 a           84 c           75 g          152 t
ORIGIN      
        1 gaatggatat atccagacag ctgatattgc ccattactac acacattttt gtttattgaa
       61 tattgttgtg gtttacagat ttaatagacc caacactgga agttctgtga gttgtagcca
      121 tttttgatct tcctgacttg ccaggttcaa cattatttta ttgataccaa agtgaaaaat
      181 gacctgtgct tacacttaca aggatctcag atgaatgttc tgactgctca acacggcaag
      241 aaaattcact ttcacagtca acaagtcatc ttactcagta gaacacaaaa gttaaatggt
      301 ctgtaacttc aatattagca aggaaaatac agtacaaatt actaaaaaat actaaaatat
      361 agaattgtgg tcaggtatcc ccactacatt aatcgcagca gtagcctgaa atttgaaact
      421 tttaataaaa agttcttaaa tataaattat atggcaaatg tacagtacat tgctttgtca
//
LOCUS       KCLJ01001413             433 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 157823cal ultra-conserved element locus
            uce-7829, sequence.
ACCESSION   KCLJ01001413
VERSION     KCLJ01001413.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 433)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 433)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..433
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="157823cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>433
                     /note="ultra-conserved element locus uce-7829"
BASE COUNT          140 a           72 c           66 g          155 t
ORIGIN      
        1 accttgtaat tgaagtattc ttgccatatt cttaagcctt tattccaaaa agtatcctca
       61 tgcaaataga ataaatcaca ttgcaagcct ttcagaaatg ccattttcag actctacctt
      121 ctgatgatta ctgttctctt ttttctgtaa agttctatag agaatatatt ttaattagct
      181 tccacttgat accacttcat acacactgcc cagatttgac ccagtgtctg atcatataga
      241 atgcattaca aaagaactgg tcatttgagt gctttaatat agctttgcat taatgtgaga
      301 catcatttag acaaggcatt aaaagtgtta ttttaatgac tgaagtgtgt agggtgggaa
      361 gaagcttaat ctttatagga agaacaattt caattagctc taaaatatta atttgttggt
      421 ataactatat act
//
LOCUS       KCLJ01001414             379 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 157930cal ultra-conserved element locus
            uce-7175, sequence.
ACCESSION   KCLJ01001414
VERSION     KCLJ01001414.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 379)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 379)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..379
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="157930cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>379
                     /note="ultra-conserved element locus uce-7175"
BASE COUNT           88 a           87 c           97 g          107 t
ORIGIN      
        1 cgccaccatt tctccgtgtc agctccgcaa gccatttaat acagacaaag gttgtatgaa
       61 aatataattc tgcttttgtt agcagccatc aaactctaaa aagcgtcact tttgttttct
      121 tgtaacattg tgaaaacctc gtgtcggatc gagagctggg gccctctcga ctaatcgcct
      181 ctcctttgtg tttttagatt ataggggcaa ttagtgttgt caaaacctct ggcaattctc
      241 tttgctcttg acagggtgtc agtccgctgg gcgagaaatg gaaggtgtta taactctccg
      301 gtaattagga tgcctccgat ttgaaaatgc cagcaaacgt gttcgagggg ccgcgggagg
      361 gggcggggag cccgcccgg
//
LOCUS       KCLJ01001415             335 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 158041cal ultra-conserved element locus
            uce-2157, sequence.
ACCESSION   KCLJ01001415
VERSION     KCLJ01001415.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 335)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 335)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..335
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="158041cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>335
                     /note="ultra-conserved element locus uce-2157"
BASE COUNT          113 a           49 c           90 g           83 t
ORIGIN      
        1 tcttttaata gttcaagctc cttatggaac atttggatcc tgatgaagag gaagaagatg
       61 gagaggtgtc agctagcaca aatgctcgga acaaagcaat tacctcgctg cttggaggag
      121 gcagccctaa aaacaatgca gctgagacag aggacgatga aagtgatggg gaggatagag
      181 gaggaggcac ttcaggggtg aggcggagga ggagtcaacg tatttcgcag cgtattacgt
      241 aaaatgattt ttatgtgctt ataaatgtca gtttattata ttaaatgtac accaagtaat
      301 gtaatccaca tgaaaaaaag cattttgtag ataga
//
LOCUS       KCLJ01001416             524 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 158141cal ultra-conserved element locus
            uce-4578, sequence.
ACCESSION   KCLJ01001416
VERSION     KCLJ01001416.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 524)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 524)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..524
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="158141cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>524
                     /note="ultra-conserved element locus uce-4578"
BASE COUNT          143 a          105 c          107 g          169 t
ORIGIN      
        1 tcgcttcctc ctcccagccc agcgagcagc ttgctgaaat tgtgacaaat gctcacacct
       61 cacagaataa aaatcctgtt caatcttttc acggtgccca gaaggctccc agtgaatcgc
      121 gtttggaggc gtccatccaa acttcttcct ggaattccac ctgaagctgc tctgtgtcct
      181 gttcacagct ttcctttgca caggataatg gattctttaa gctttgaaag tgagttgttg
      241 tggcctaaag taacaaatca gttttggaat gctgtctgtt gtaaatgatt tgggggtaat
      301 aaattttctg gtacaaagca ataggcagag ttttcataat gttgaacagt ttggacttgt
      361 cttgaaggga acaatgtcgc gaaagcaatg tgctggttcc aactatttgt tattataaaa
      421 gacaatcctt aaggtagaat cctcatcaga tttcatgctt tgctgtaact tgttttattc
      481 ctagacaaat aaaaatattt gagcatagtt gtgtatctgt taca
//
LOCUS       KCLJ01001417             555 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 158251cal ultra-conserved element locus
            uce-3111, sequence.
ACCESSION   KCLJ01001417
VERSION     KCLJ01001417.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 555)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 555)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..555
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="158251cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>555
                     /note="ultra-conserved element locus uce-3111"
BASE COUNT          136 a          132 c          107 g          180 t
ORIGIN      
        1 tttttaaccc cgccagaaaa ttggagggct cagaaaaagc acttactgct ccagaggttt
       61 ctccacagta aaatggagtc tttcccaggg aagtcatagg acatccatag agttgggaaa
      121 gaatttttta ggaaagtctg ttgaattctg tgctactatt tttccatgtg cttgccttct
      181 tcacttttat ttaaaactgt actgtcactc accttagact tctcctgatg cagctcaatt
      241 tgaatgtctg tcagcttagt cctgaggtcc tcattggcag cctgtagggc aacaatcagt
      301 gcctcaggct tttcgccctt gctccgtcct ttttttgaca tgttttttta tcaagagtcc
      361 acacgtttat ttcaaatatg gattgccatc ttcttctgtt cctttcagtg tcagcaacta
      421 ctgcgtgaca ttccttaagg tccttgactc agctgctttg gaagaagaaa taagattatc
      481 tgtcagcgga tgctgcatcc ggacatgctt accatctcca aatttgcctg aaaacctaca
      541 aggcagatcc cagca
//
LOCUS       KCLJ01001418             551 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 158360cal ultra-conserved element locus
            uce-5371, sequence.
ACCESSION   KCLJ01001418
VERSION     KCLJ01001418.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 551)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 551)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..551
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="158360cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>551
                     /note="ultra-conserved element locus uce-5371"
BASE COUNT          138 a          117 c          122 g          174 t
ORIGIN      
        1 ttggctccag ctgtcttggt cagtgtatgg tgcaggtgga catgggcacc ttagaaacca
       61 gtgccctctg cataacagac atttccacat ggagctcata ccacacacac cctagcatgg
      121 gaaaggtctt caggtggaca ctcaaaattc tgtttcagca aggcaaaggt ccttattttc
      181 tgtagcttat aaacctgctg ctgttttcta ggtgtaaagc accaagactc acagaattct
      241 ttcttggcat ttttgaatgc gcctacctct gctctggatc aatttgaagt aagtgactct
      301 gtggaactgc tgttgtgtgc aggtcctgtg catatttgct gagggtttgc tcctgtattg
      361 caccaataat atttatcatt tacagtgctg gctgtcttct cttgaatgct tcagtgaatt
      421 ctgccttgaa tgcagaaatt tgcctgatgc agtgaacatg aaaagcatag ttgttcaaat
      481 ggctctttgt attcagaaaa tgcgcagtgg tttggtaaaa acaagaaatc ttccttgatt
      541 gcatcccatg a
//
LOCUS       KCLJ01001419             650 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 158471cal ultra-conserved element locus
            uce-7654, sequence.
ACCESSION   KCLJ01001419
VERSION     KCLJ01001419.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 650)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 650)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..650
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="158471cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>650
                     /note="ultra-conserved element locus uce-7654"
BASE COUNT          190 a          133 c          143 g          184 t
ORIGIN      
        1 gcctttctta aaataatgag gtttcatgcc agttctagtc ccattgagta tttacacctt
       61 ggacagcttt gctcacaaga agtagaaaac agatacaata catggcttga aaaatgacca
      121 gagtatgcac ctatagtact gtacactaaa taaaatacac aaggcagcaa tacttagggg
      181 ccagaaacac tgcttactac aagtcagtta tggaatcata atttacagta aaaatgggca
      241 tgtcccaagg ctcaattttg ttttcttttg tcatttacag tagaataaat atttgtcgct
      301 attgctacac tttgtttaca ttctaatcta gtaaatgcag aaagctagtg taaagcatat
      361 agattacgtg taggtcccat acgtatgaca gtttgttcaa gactagtagg tttttaaatg
      421 gctaggagaa ggagaagaag agagttgtgc ttacgatcag ctgcttttta tgtcgaattt
      481 aatatcaaag cgtccctgga agcggtcctt gtcgctgtag acgatgttct gcccgtaggc
      541 cctgcactcc acgcgcacct ccacgtcgta ggtcaggttg gtgaactgca cggccaccag
      601 cggctgcagg taccgcggct gcagcagctt cccatagtag gggtagtact
//
LOCUS       KCLJ01001420             529 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 158578cal ultra-conserved element locus
            uce-1081, sequence.
ACCESSION   KCLJ01001420
VERSION     KCLJ01001420.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 529)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 529)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..529
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="158578cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>529
                     /note="ultra-conserved element locus uce-1081"
BASE COUNT          149 a          103 c          108 g          169 t
ORIGIN      
        1 gaggaacatc tgggctatgt cagcatctta cacgcattta cttaattgca atcttgaatg
       61 aaattgtccg tcataaaaga tgcctcgaga atttcgattt cagccgtctg ctcccatcgt
      121 ttgtcttaat tttatttcac gaccactaac tgtaggcact acttcagaaa tattttgaat
      181 ttagttttaa ttgtacagct ttcaactcac gcaacatttc tctttgtgtt gaaagcatca
      241 cggtgattta tcctcattat tgtgtaaata ggtttcggca gttctcagta aataaaacaa
      301 agagtgacag gaggagaagg gggaatttgc tttcctacca attagagtag ccttaggcag
      361 tacttttaag aggagataaa tcctgcaaat cactaaaatg atcctgtcac atgcaccaaa
      421 tattaaaatc acacagcggc gcacttcata cagtttgctt tggtttaatg agttggggtg
      481 ggcttcgtca tgaggtttgc gtctcgcagt tggggaccct tgattgaca
//
LOCUS       KCLJ01001421             544 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 158685cal ultra-conserved element locus
            uce-2446, sequence.
ACCESSION   KCLJ01001421
VERSION     KCLJ01001421.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 544)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 544)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..544
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="158685cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>544
                     /note="ultra-conserved element locus uce-2446"
BASE COUNT          180 a           83 c          106 g          175 t
ORIGIN      
        1 tttaagtttc tgactctttt gcaaacagga atgtatcaag ggaagatgaa aagaagtaac
       61 accattgaga ttaaagggac caagttttac cagcaatcac agcaaatatc tgacttgctt
      121 aagtgaagcc aattactgta ttattgcctc cttttgcact atgcacagta gggatgtcac
      181 tggataatgg tttgcatgta gagttaatca ctttgatgca tttctgactg atcccagcaa
      241 attatgtttt ggttccacta tattaaacac aagagcaggg gattatcatt aataaatcta
      301 aggcacagca tgcataaatc ttgaataaat caaatatcaa ttacataggc agtatctgct
      361 gacatctgct ttcatcaaat aatatatttg aaatagattt tattccactt tgttggagtc
      421 aaaggaatgt tagattggtg tgcaaagatc taaagagttg ggttatgtag gagtgctatt
      481 gcttgctgag caacataaaa cagtttttta gacataaata gcacattggt ttcgtagagt
      541 agtt
//
LOCUS       KCLJ01001422             775 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 158793cal ultra-conserved element locus
            uce-417, sequence.
ACCESSION   KCLJ01001422
VERSION     KCLJ01001422.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 775)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 775)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..775
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="158793cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>775
                     /note="ultra-conserved element locus uce-417"
BASE COUNT          224 a          189 c          141 g          221 t
ORIGIN      
        1 gctgagatgc ctcataccta caaccgatct gttgctttta caagtttaat cttggtatta
       61 aggagctgat tgtggaacca tgtcgctata acatcttcaa cccagctgta catcatataa
      121 accgctatag gagggggcag tctcccatca ttcctggcag cagcacatac ctttaactcc
      181 ctaatctgta atactacaaa ataccgctct catttcttcc caagcacaag tggactacca
      241 gcaagggtcc aacagtgtta ttcctaatta cctttttttc actcttgatc ctgtggcgct
      301 cataattagt tacctggggc tgcaatccaa tttgaagtga tgacaagaaa gtgatccatg
      361 aaaaagtaat aagttaaatc caatttcagc cttcctctaa ttaaatgcac atggaactaa
      421 tgactcaaac cctaccattt cagtgataat ggtaattagc gaggtgggag tcactctctt
      481 ttttcaacac tgtaggtgta aaccacaagg taaaatggca ggagcactct taattacatg
      541 tgtcattttg tcagcaattt acacatttct gaccagtcag gaaggtttca tttgttttcc
      601 ccttccccga ggtgggacgt tcaggctctg gcactgcctg ccccacattc ccactcccaa
      661 cctgggcaga aatcacagca aacctgttct gtaaatgctt aatgtcaaag cagaaaacct
      721 gcaagaaaat tatactcagg gctctaacag gaatgaagga tcctgccttc tactt
//
LOCUS       KCLJ01001423             753 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 158906cal ultra-conserved element locus
            uce-351, sequence.
ACCESSION   KCLJ01001423
VERSION     KCLJ01001423.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 753)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 753)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..753
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="158906cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>753
                     /note="ultra-conserved element locus uce-351"
BASE COUNT          237 a          150 c          130 g          236 t
ORIGIN      
        1 aaaaaagact tctgtaaatg taatagttca aaggagataa agaacagctc atatttacat
       61 tttagcacag ctgcttaagg ttactgtgat ggccttgtga acttacatct tgctgttctt
      121 gtgttatagg aggaaaaagg gctgatgtga gaacaaagta ctgtcagcaa tctacccttt
      181 aaactgctta gacctggaag gcacactcat tgctttattt ccttgctcat ttttctccaa
      241 gattggtaca tctgaactac ctttctacag atctatacag caccactgct cagcaagaaa
      301 aagagagtta tattttcccc ttgagttagg acgcctcatg acaaatgata atggataatc
      361 aataaactgg gaaatatgag gccacaaact ttatgaagcc aagagacata ttacttctga
      421 acaacactca tttcccttaa caaagtcact actagactgt gcctaataat ctgaaagaaa
      481 atcaaaggac ctgcaaccac atcagcaata ttggcaactt attccacttt aatggcattt
      541 tgattgattt ttctgcctaa tggtagtttt atactgtaga tttgacgctg cttctgcaaa
      601 atagttgtgt gtaataaaca tccccgaagg caaacagtga acattaaggt tcttgtctta
      661 ctaggagtca taattgaagc ttgaccaaca ttgcctttgg cctttttaaa gaaatctttc
      721 gcaaaagcta ttcctttctg cttttccttt ctg
//
LOCUS       KCLJ01001424             688 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 159017cal ultra-conserved element locus
            uce-3957, sequence.
ACCESSION   KCLJ01001424
VERSION     KCLJ01001424.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 688)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 688)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..688
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="159017cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>688
                     /note="ultra-conserved element locus uce-3957"
BASE COUNT          227 a          102 c          111 g          248 t
ORIGIN      
        1 tcaaatacat gaactcataa gtgtttgaat tttatgacct ctgagtcatc ctaaatacaa
       61 tttgattgcc ttagggtgca ttgaactgtt gcaaaacagg ttgtcttcaa aagaatcata
      121 gaaaaattag ttttactgta atttaacatg taaccttgtc aattgcactt ttgacttgta
      181 ctaaactgca caatgattat tacacaggta aaatattcaa tgttatgcta tggctacagc
      241 aagcattgat taaactctcc agtgttcatg aaggctgaca gggattcaaa ggaggaaatg
      301 taaaacttga aggtacagca gtatagtgac atttcactct ataaagctgc caatatttta
      361 atcctgcacg taaatcattt tcatcagttc aattccatat cttaatttgt gtagcaaaca
      421 aagtattgga ttgcattatg tttaataatt aagaatgtga tatcaatttc catatatttt
      481 aagttcctag aaagaaatag agctaacatt ttttgttcca atttatttgt tttgcaaaat
      541 aagaatgact aaggattagg tctaattttc atgctgtgat caaccaaact ttcttttata
      601 gaacctttag tttctttgcc taagtgatgt cttcgtcaat gttcatgttg tattcattta
      661 gagtgatgat tgatatggta atagatac
//
LOCUS       KCLJ01001425             428 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 159129cal ultra-conserved element locus
            uce-3214, sequence.
ACCESSION   KCLJ01001425
VERSION     KCLJ01001425.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 428)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 428)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..428
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="159129cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>428
                     /note="ultra-conserved element locus uce-3214"
BASE COUNT          117 a           74 c           91 g          146 t
ORIGIN      
        1 actcgcttct cctaagcttg gagctattta tggaaattac agtattcatg tgtgagagct
       61 tcagtcaaag tatgaggatt ggtttgagag gaaaatttcg actgaaagct tgtaattcac
      121 atcgttctct tctcagcttg gcaaagttga aggttaacat catctgttct agacatttca
      181 gattagtcac agaacttttc ttggtggttc agtgcctggt catccagtca gaggaacagt
      241 aatccatatg gaaaaattag ctcaatgtta ctagactggt ggttaatact tgagccttag
      301 ttaggaatgt tcgcagcatc ttgggactct tttcttcctt gatcaatttc ttaaaatagg
      361 attcttcatc agaggctgaa aagaggagga ctgtactgaa gtatattttt tccatcatcg
      421 agtctttt
//
LOCUS       KCLJ01001426             288 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 159233cal ultra-conserved element locus
            uce-1233, sequence.
ACCESSION   KCLJ01001426
VERSION     KCLJ01001426.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 288)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 288)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..288
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="159233cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>288
                     /note="ultra-conserved element locus uce-1233"
BASE COUNT          119 a           50 c           40 g           79 t
ORIGIN      
        1 ccccaaagaa aaataaaaga tcaaattaag tgcctctgtt ttgaacagag cacataagca
       61 ataataaata gtgactccca tagtaaaaga taaaatttca agttacgaca aacagctttc
      121 attacaggaa tagaaaaggc caataacaaa atattctgca ttgccattta caaaaaagta
      181 ttgactcaag cgggctttct ctttaatatg ctttgcatat gaaattcttt ccaatctaaa
      241 tataaagcac catttagttt ttggcaatga aaaaaactgc aaaacggt
//
LOCUS       KCLJ01001427             602 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 159446cal ultra-conserved element locus
            uce-1492, sequence.
ACCESSION   KCLJ01001427
VERSION     KCLJ01001427.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 602)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 602)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..602
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="159446cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>602
                     /note="ultra-conserved element locus uce-1492"
BASE COUNT          149 a          127 c          128 g          198 t
ORIGIN      
        1 gagtctgtca tttctcaacc aaggtctgta ataagaacac taaaatttta acatactcta
       61 ttcacggcca tgttgaatcc catgatagtt aatttttcct gacagactcg gtcctggtaa
      121 tgaacaggta cttgtcagac ttgccacagt tgttttgggt tctctgtcag tttcagcagc
      181 tgggggtcag ggggtgtatt cagcggagac cgcaagacag acggctgtca tgtccttttc
      241 ctgcagattc aaaatggtga acagaaagcc tacgtcttga aaaacaagca gctgacaggg
      301 ccaacaaagg gggtcatcta tcttgaaata gatgtgattt ttaatgctgt aagtcttaac
      361 tttttttttg tactgctaaa gagttcagtt tcatgaaagc ttttgttcct gatttgtaga
      421 gaatttctgt cattcctcat tttctctaag ccttgatgta tactacagaa tactcttctg
      481 ccactgcttg gcacacccac tcttttgctg ctgcttattg ctgctaatgt acagagcagc
      541 aactcttgtc tctgtgtatg cttatgtgtc ccgagcttgg cagccatgac tttgaaactt
      601 gg
//
LOCUS       KCLJ01001428             640 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 159553cal ultra-conserved element locus
            uce-2462, sequence.
ACCESSION   KCLJ01001428
VERSION     KCLJ01001428.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 640)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 640)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..640
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="159553cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>640
                     /note="ultra-conserved element locus uce-2462"
BASE COUNT          198 a           95 c          146 g          201 t
ORIGIN      
        1 ttatcatgtt gtgctgttaa ggtagagcaa acagttacgt gcttctttgt tgtcaaaact
       61 ggattggaaa atgatctaag gtgcatcttc ttgcctgatt ttgtatttta aaagaaaatg
      121 acataaagag gacgagtgtg aagtctggca agtcagaaat tatgcttatt ttaagggatg
      181 cagtttaatg gtagagaaat atcatgtgta atacttataa gaattttttt gttatcgttt
      241 ttgtaggctt tgagacaaca gcagaaaaga agaaatggag tctcaatgat ggtaaacaag
      301 actgttcctc gtgttgtttt gacaccatta aaggtgtccg atgagcagtc ggattcacct
      361 tcaggtaaat agctaaagga ccgtttgcaa gatcagctct ggtcacagag ccttcctctg
      421 aattacagaa tttggaattg ctgaaatact atttccactg ggtggctttg tttaacgtct
      481 ttatttcttt atcaagactc gtgtctcaag aaagagctga aggcacacag taaaatgaca
      541 attggtaata gcagcagctt taaaggaatg caaagtaaca ttttgtttgg ctctggagta
      601 atggaggacc acatgctggt attcaatgcc ataaaaaggg
//
LOCUS       KCLJ01001429             856 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 159663cal ultra-conserved element locus
            uce-908, sequence.
ACCESSION   KCLJ01001429
VERSION     KCLJ01001429.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 856)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 856)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..856
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="159663cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>856
                     /note="ultra-conserved element locus uce-908"
BASE COUNT          285 a          147 c          145 g          279 t
ORIGIN      
        1 aagtatccgt aactattaag caatcatgtt gagacatctg acaactatta ctactgctta
       61 gttatttttt atatatttta acagtacagt tttttccact tcatgtgaac ctattttaaa
      121 aaaagacaca cagaagcata ttttattcct tattagctat tctacgatat gcatcatcat
      181 tatactatta tacaccagtt atttttagta aatcctgatt actgcttcct gaagaagaaa
      241 aaaggaggac gacagcgatt aagttatttg tttagttttt tagattcagc tgtaattgct
      301 ggtacacatc tccctgactg cacacatgaa gcaggttgaa tagaacactg aaattacctc
      361 cttcataata gtttgttttg ataatgtatt gtgtgtcgag atgatgagaa acagttgctg
      421 tcaatttgat tagccattat atttttatgt taattgccat tattgggtcc attctgttta
      481 gtgtcaccat agaagccata caatgttagc ataaataaca aattggagta aattaggaag
      541 atatattttt gccaattcat tttaattgcc cctcagtcct tccgtcggtt aacgcagctg
      601 ttgacccata ataagcgcta ggtcaatata gctgcttgtc aattcaaaaa tgcaaagtgc
      661 tgtgttgctg gtaatggata tacaacaacc tttgccagcc aactgaagca aacgaatgac
      721 aactcacacg aaagaataaa gcatcagcta tagagtttcg tgacctgata ttagtaggca
      781 ggctaattga aagtcactgc ttaaatggat aaagaaagta caaaaatcag tatgtaaaaa
      841 atgcacacat aggcat
//
LOCUS       KCLJ01001430             556 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 159771cal ultra-conserved element locus
            uce-7963, sequence.
ACCESSION   KCLJ01001430
VERSION     KCLJ01001430.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 556)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 556)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..556
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="159771cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>556
                     /note="ultra-conserved element locus uce-7963"
BASE COUNT           98 a          166 c          137 g          155 t
ORIGIN      
        1 gcagcagcag tggccaggac atgggagagt tgctttggac cactctcttt ttctgaatgc
       61 ctttatctct ccttaaatta ctcccctacc attgccctct gcctctcccc cgcgcttgcg
      121 tgcccctcac tccggtgcca tttccatgcc cctacacctg tgttgttctt tctgccctct
      181 ctcctctgca ggggctgtta gagcctctag tatcttcccg atcctgagtg tgattctgct
      241 tttcatgggt ggactctgca ttgcagccag cgagttctac aaaacccgac acaacatcat
      301 ccttagtgcc ggcatcttct tcgtgtctgc aggtaaatgg gctccagggc ttggggggct
      361 gcccagccgt tggggtacag ttgatttccc agccctgata agtctcattt gggctgaaag
      421 cagcatcaca aggacgcctc tgcctgctca tccaccagtt tcctcctgct gacagaggga
      481 gagtttctct aatctgacat ctctcaggga ccaggagtgt gatccaggga agtgcaggcg
      541 catgaggagg gttttg
//
LOCUS       KCLJ01001431             699 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 159879cal ultra-conserved element locus
            uce-2273, sequence.
ACCESSION   KCLJ01001431
VERSION     KCLJ01001431.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 699)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 699)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..699
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="159879cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>699
                     /note="ultra-conserved element locus uce-2273"
BASE COUNT          210 a          136 c          182 g          171 t
ORIGIN      
        1 gccagtaatg ctgtttacac ctccaactat gccaaagagc aggaaaggcc cagtatggac
       61 attgatcaca cgtaacctgt cctaggaaat acgtacatga gtgtgcagtg tacaggggtg
      121 gaatcaaaaa tcagctcata taaaccccct atctggacac catggtgatt gttactgcat
      181 aatggcgagg atgcacatca gaaggattta tccagataaa atctgcagac gttttaatca
      241 gtaccaagat agatcttgtt tatatcaaga acctttttaa tgcagcattg ctggtttggt
      301 ccgacatcat ctcctgcagt gtgtggagac aggccaggag tatgaaggct acagagcaga
      361 gcaggaagaa agtcaactgt gaaattggta attttatgag tttcacgggg ggttttgttg
      421 ttagacacaa tgcatttgga acagagtgcc cggggtaata ccatccacat agtgtccatt
      481 tgtcagcgat aggtaacgat atctttaacc tagagttaca aagggaatcc gaaagaaggc
      541 taagggtgga gatgtgccca tcacagcagg gtcatgaggt gttactgcca cattgaatct
      601 ggggaaccca tcagaaactg aggcatggtt tgtccttgaa gaggagcggg aaaagttatc
      661 gcatttttca gcagcccagc agagtgccgc agggagaag
//
LOCUS       KCLJ01001432             787 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 159990cal ultra-conserved element locus
            uce-5498, sequence.
ACCESSION   KCLJ01001432
VERSION     KCLJ01001432.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 787)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 787)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..787
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="159990cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>787
                     /note="ultra-conserved element locus uce-5498"
BASE COUNT          209 a          188 c          200 g          190 t
ORIGIN      
        1 tgtttcaaac ctgtgtgagt cctgaagtgg tccttcattg cagaggctgt gaggaaagaa
       61 taatggcagg tgggccaggt gcacttgaac ggcttctctc ctgtgtgcag cttcatgtgg
      121 ttcttcagcg cccacttctc cgtgaagctc ctgtcacaca ggtgacatgt aaatttcctg
      181 ggtaggcaag aggaggaatt agcagcccgc acatgcacaa aagcgaagga gcgtgttttt
      241 aacccgaagc gtggtaaatg catagacttt cgtgaagaga attgcagacc gggtctgtca
      301 tgtctgtata accaggcatt gatttttctg tcgaggcctg gcacttcagc catttattct
      361 ctgctttgcg gttgggccca acgggtttga aaaattctgt tacagtccag tcacccctga
      421 ggcaaatgtg agaatagatt tcacctgtgc aggcccacac cacttatcca gggcacgggc
      481 tgtcagagca aaggctaaat gaaaagctat ccatactaaa ctactcagac aatcacactg
      541 ctcggtgcca tgccgccgcc gcgccggctt gaaatactac ttgtaataac gctgctgcga
      601 taataaacaa aaactgcttc ggaacaaaaa tgcggctttt taagaggggc tgtagcgatg
      661 gaagtaagtg ttttctgata atgcattctc ctccccagcg ctaccacagg aaacataaaa
      721 gatcccagtc gtggcaagga aggagagaaa aggcaattcg ttctgctgag cagaggcacc
      781 gcacctc
//
LOCUS       KCLJ01001433             635 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 160104cal ultra-conserved element locus
            uce-6515, sequence.
ACCESSION   KCLJ01001433
VERSION     KCLJ01001433.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 635)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 635)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..635
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="160104cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>635
                     /note="ultra-conserved element locus uce-6515"
BASE COUNT          219 a          118 c          116 g          182 t
ORIGIN      
        1 tcctcacctt tcatcaaaat aagaggtatc ttcatcaagg aaaagtattc tgaaatggta
       61 gcctggttca acgctacagg cagatagctt tgcgttggag tgctttaata tgtttttata
      121 ttgcatataa agcatgcaaa cataaaccag tttgttgaaa actaccctct ttgtggaagc
      181 tggctgtaat tctgaacaag ttttcaattt tcacactgct gccagggtaa aacattttaa
      241 agagtttaat ttttacagtg gcttcaatga cacaagatta tctaacaaag taatggttaa
      301 tcaatagagg gtttagttgt caggtgaaac atataacaca ctaaaaggga ttgattgcaa
      361 gactcctcct tatttactag aaggtatata tttaaaatga cacaaacttg ttaccaagct
      421 gcattccttt aaccttgcaa aagccgtttg agaagagtgt taagcagccc tatagccaaa
      481 caagctctaa taaaaaagaa atatatagga gcaccaaatc atgtcagaag caggggaacc
      541 acaaagctgt attcactctc agccaaaggc ttaaaatgcc acagaggcac tagactatgg
      601 ttcactaaag atagagctgt atctgatctc attcc
//
LOCUS       KCLJ01001434             718 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 160210cal ultra-conserved element locus
            uce-5919, sequence.
ACCESSION   KCLJ01001434
VERSION     KCLJ01001434.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 718)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 718)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..718
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="160210cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>718
                     /note="ultra-conserved element locus uce-5919"
BASE COUNT          182 a          137 c          146 g          253 t
ORIGIN      
        1 ctctcttcat gagaatggtt tctccctatg ggagagtaat taacattcct gggctatgct
       61 gccactgcat ttatttgggg ccctcactct ccttgtggag tccagtatac caagggtttg
      121 ttatggttta attcaaaagt gacaacttcc aagaggtgcc acatgggcac tggtcctagt
      181 ttttaattcc aagttttctt gttcatcctt gattaataga atttcactaa ataataaact
      241 cttctctctg ttatttgtgt gtgtgatttt tgtagtggag aaggcaaatg caaagccctt
      301 ccagatgact gaaaaacagt gggtcctctg cagctacagg ggattctagc cattaactaa
      361 aggccagcaa gcactcaagt ccccaagtgt tttcctggtg taaccacttg ttaactacat
      421 tttctcttct tctttttatt tttacatttt agggtgttac agtaatttga aaggcaatga
      481 gcagggtttt tggaacttac cttaaaagca aagtgctgag aagacacctc ttcttacaga
      541 agtcttatta aactcttcta gacttgcttt agaagtaact gatttccatt gtacttgtct
      601 tgatttactt ctgggaaagg ttgaattgaa tacagtgcta agttgggtac atggcctaat
      661 ctgtcatgct ggagctgtgg ggagctgttt atcttatctt tgtattcttt aagcctaa
//
LOCUS       KCLJ01001435             530 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 160319cal ultra-conserved element locus
            uce-548, sequence.
ACCESSION   KCLJ01001435
VERSION     KCLJ01001435.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 530)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 530)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..530
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="160319cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>530
                     /note="ultra-conserved element locus uce-548"
BASE COUNT          175 a           90 c           84 g          181 t
ORIGIN      
        1 ttgtgctgtt tgtctttgca gtgaactgag gagaagggaa ggcaggaggc ttgggaataa
       61 cttttcacag cttcagcttt tgtttacctc taattgtcaa gctgttattt ctggaaaaga
      121 tgcaagatgc caccttcaac caatatttct tttgggcatt tattaattat aaccacaaaa
      181 gcatgcatca atctatcaca aacttctatt gttccttctt taagcctacc ttaactccat
      241 tattgaaact ttaattaaag cagaaatgaa acaaaaatgt tatgcttctt gcattttaaa
      301 aaagcatact tgtataatgg ttacatgtct aaattagcta aattaacacc atatggtagg
      361 caaagtatat aaagcctttt aaagctgaca gctaaagtga ttaaagaaag tctacagtct
      421 tccacttaca gcttaaatca catctgtgca ctttctatgt taattgcagt acatgcagaa
      481 gtggataata aagaaattcc actttattgg ttgtaattta tatttattac
//
LOCUS       KCLJ01001436             707 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 160432cal ultra-conserved element locus
            uce-6604, sequence.
ACCESSION   KCLJ01001436
VERSION     KCLJ01001436.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 707)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 707)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..707
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="160432cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>707
                     /note="ultra-conserved element locus uce-6604"
BASE COUNT          220 a          113 c          138 g          236 t
ORIGIN      
        1 gactgattta gtatttcagc agatttacat attctattaa tgaaataaag cattttccct
       61 tcttctttta aaaagcaata tacttttaaa agggtaatgc aatcacaacc attatgtcaa
      121 tgaaaattac acgctgggtt tatctctgta ggtatctgtc aaatacaaag cgtgcacaac
      181 atctttggag taataatgat gttttatcat tttaattaca aacactttga aaaaaatccc
      241 taaagtgtac caattggggt ggtctgaatt aacagtagct tgatagccca agggtagcaa
      301 aaatagattg agctaccaaa tttcatagta gttatagcag ctgtcttctt gcctcaggga
      361 acctgggtat ttaacaaagc agacagcttg gcagtggcat ctgattagta atgtgggttt
      421 tgttggacag aattctattg tctcactgct tggttcggaa ttcagagagc tacggaatca
      481 tttagttttt acagttagct tctgtgtatt cacttgcagg tattgtaaaa ggttattttc
      541 tcacttatca cttgctccaa gtagggaata ttgtcttgaa acgagcaatg aaacatgaca
      601 ggatttaaat gtcagggtca gttgctttcc catttctatg ccaaaatttt gttgaaccaa
      661 ctgtgtaagt ttttctaatt gggcagaaaa gtgaataagg tgaaagc
//
LOCUS       KCLJ01001437             428 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 160542cal ultra-conserved element locus
            uce-1891, sequence.
ACCESSION   KCLJ01001437
VERSION     KCLJ01001437.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 428)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 428)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..428
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="160542cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>428
                     /note="ultra-conserved element locus uce-1891"
BASE COUNT          128 a           82 c           86 g          132 t
ORIGIN      
        1 aagtggacac tatttaaatt gggggcatgg gattttccaa ttaattggat tgctatggta
       61 ggccaatata ttaagcacag gcagttttgc tgctaattac acacaacttc tctggagtat
      121 cggatattca gatccatttt atgaatatgg tagggagaat aacaactgta aaacaaagca
      181 ctgtgcatgt aagtgactgt tagcgtgtat ttcagaaggg ataaatgctc accatatggt
      241 acaattactg tgtccaagtt ttcaaattag cttctctcat cctccttatt actgtcttta
      301 aaaagagagg cccaacatga tttatctact ctgcagcaga actcttgacg caaaacagca
      361 gcccagttct gtccagccta gcataataga ggctgtcgga cttttttata ctaattactg
      421 tgtgagcc
//
LOCUS       KCLJ01001438             573 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 160649cal ultra-conserved element locus
            uce-3761, sequence.
ACCESSION   KCLJ01001438
VERSION     KCLJ01001438.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 573)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 573)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..573
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="160649cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>573
                     /note="ultra-conserved element locus uce-3761"
BASE COUNT          177 a          102 c          114 g          180 t
ORIGIN      
        1 aagggttaaa ggctgtgaaa ctctacatta aacagagtgc cagcaagggt taagacgagt
       61 gacacggaca aggggactct ccttctgtgc tacatatgta gatgggtatt aaggacatgc
      121 atctctcctc atctaaaatc atgaattttt atgaagtcag ccctgcattc ccataattca
      181 gtagggtgca ctttgcagac cctaaagtgc tgtcactaca gaaggtttca ttgcttgcac
      241 ctgctaaaac atttgaggta tttgagaggc agtgaaacac atttgctttt cattttatct
      301 gactttgaaa atctttgaag tgtttaatag tagtccagaa aagatttctg cctcttaatc
      361 atttacttgt agggcacatt ctccactggt agcctgtcag gcagaaaacg agtttagccc
      421 agttttatta agtgccacat gccgagtcag tgttcattaa aggtgtttta aggtttgaat
      481 tatgtaattt atgagaaaaa gaaatacaaa attccattgt tttattaata tgcagcacag
      541 gatatactgc taataacata ctttttaaac aga
//
LOCUS       KCLJ01001439             728 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 160758cal ultra-conserved element locus
            uce-372, sequence.
ACCESSION   KCLJ01001439
VERSION     KCLJ01001439.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 728)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 728)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..728
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="160758cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>728
                     /note="ultra-conserved element locus uce-372"
BASE COUNT          213 a          150 c          111 g          254 t
ORIGIN      
        1 ttttcctttt ggctattgag acttcattta atttgccatc atatttcact actcacctgg
       61 aagacacaac tgtagttttt ccacaactgt tgtaatattc cgctgttgaa ctctacatcg
      121 gatgatttcc tctgtttggg ctatcacctt aaaggtaaaa tcacacttaa ataaacttac
      181 tttgctacaa atattcataa tgtcgatata ggaagcatca ttttctcacc tctttcccag
      241 catcctgaag ccttcggttg gtatcagtaa cttggacctt aaaaataaat tcacctttgt
      301 tagacaaata tgcatatatt gccctgatgt gactgctcac ccttgtaatc agatcatgct
      361 tcctgagaaa cttagaacaa agaaatgcaa attcaaatta actctacagc ttgaacttga
      421 acttttgatc gcaaagggct tttgttaaat tcaattactt atgacagttc tttctaacag
      481 attctgtggc aaacttctca aatttacttg ggatttttga actttccttg tttctgtagg
      541 tctgtcaaac aattcaaatc attgacccaa ttgaccactg gtcccttttt gataacctca
      601 atgagctcta tgggccattc attgtctgta agaaatggtg attgcatttt atggtaatta
      661 aacattcata ctttgctgaa tgcaaacact gggtggttga ttaacatcaa acgtggaaat
      721 ctccaaac
//
LOCUS       KCLJ01001440             532 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 160870cal ultra-conserved element locus
            uce-2674, sequence.
ACCESSION   KCLJ01001440
VERSION     KCLJ01001440.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 532)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 532)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..532
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="160870cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>532
                     /note="ultra-conserved element locus uce-2674"
BASE COUNT          152 a          110 c           82 g          188 t
ORIGIN      
        1 agttaggaca atacatttaa ctcaacccac atcttgcata ctgaattaaa tctggagtgt
       61 gtatctttac atctacctga tccttatcta tccgtaaata ttttacctat gcttactgat
      121 tacaaacctt tctctcagct tttgtaattc atttgtgcct tccagcagtc atgagtcatg
      181 ggtcttttac acttgtcaag tacacctaat ccctaccctt catggcccag aaatcctaaa
      241 gatggctgaa catgtaattg ccttgaagtg taaaatattt cccacattat ttattatagc
      301 attgcctgct agcacctcga tagttaaggt tgtgtcagca tttttattat aagcccctat
      361 tttcagctgt aaaaatgtgc ttcaggctgg gaccaggaat gcaagtgatt ttgtttttta
      421 ctgtttttta aaataaaatt accttggatg tttttaagtt attccatctg tagtcaacaa
      481 cccactcatg acaatttaca gctgcacatg caagtgtata agaaagatct ag
//
LOCUS       KCLJ01001441             777 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 160980cal ultra-conserved element locus
            uce-7028, sequence.
ACCESSION   KCLJ01001441
VERSION     KCLJ01001441.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 777)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 777)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..777
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="160980cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>777
                     /note="ultra-conserved element locus uce-7028"
BASE COUNT          241 a          136 c          155 g          245 t
ORIGIN      
        1 agatatagaa aataagcaac aatcctcgct gcactgaact ttgcaattta acacttagtt
       61 tatatttaat taattcagaa agtgaagaac ttcaaaactg gctttgaaca ggctgtttgt
      121 taaaaaaaat agaacattta tgttttcact gttgtttttt caaatgtgat gtgacaaagt
      181 gaaaaagctg catgaaagtg tggttctttg tgtgatggaa gtgggatgca cctactagtc
      241 tcacatcatc aaagaaacag acatatatct ataatttatg ctttgcttta agcttccgct
      301 gatccgatgt ggctttttca gacaacacag gcagccctgg cacagcctgt caatcatctg
      361 ggcatgctca aattgtagac cattagtagg agagacagca aagtttcttt aatgacgctt
      421 ttatatgtgg tgtgttggca gtgaaacaga gaagaattga cttgatcaat gcattagtct
      481 aatcatgggg ttcctgctct taatttcttt tgtcggtaat ttccatactc aagcagcatt
      541 caggatactt gtaaagacac acttagagca ctgcatgatg tatgcagtca cctataaagc
      601 atgtcttgga tacagctctg taggaaacaa ggaagaagga tagggggcca gtcagatttt
      661 tctttgagct acttttcatg ttgtgagaat tacagtacct tagtcaaaaa gaggacgttt
      721 ccatctttta tatatatatc ttccaaaacc acaccagatg acagcatgtt tgattct
//
LOCUS       KCLJ01001442             531 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 161087cal ultra-conserved element locus
            uce-4519, sequence.
ACCESSION   KCLJ01001442
VERSION     KCLJ01001442.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 531)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 531)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..531
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="161087cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>531
                     /note="ultra-conserved element locus uce-4519"
BASE COUNT          164 a           97 c          110 g          160 t
ORIGIN      
        1 gataaaattg aattaaatga acctgcctct aagaaaagat actgaatagc tgagtagcac
       61 attattcaat gaatggaaaa cagggaggct ggctgaaact gctgggaaat ggttttaaca
      121 ttctatcggg ctaaagagca attctgtgaa atcactgtat ttgtttcccc cctacctccc
      181 cgccctcatt ttttaaatag cagtgctctt catactgtca gaattcagtg ttgtgacacc
      241 cctactcaaa agttatgaca gcagtgtaat gacagctact gcctcttgag aatcaatcag
      301 gcaattaatt ttgtaaatga aatgctgatt atacaaagct tcacatgaga ggcccagtga
      361 ttaaaatcaa tttaacaaat tgtttcaggt gggacttgat taataatttg ccataaatgc
      421 tgaggatata tgaccagcat acctttttgt gtgtgtgtgt gtgcacgcca ctgggagtgg
      481 aaaaaatctg cagctaactg tatgtacttt tggcttgtga cctagatgtg a
//
LOCUS       KCLJ01001443             377 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 161196cal ultra-conserved element locus
            uce-5187, sequence.
ACCESSION   KCLJ01001443
VERSION     KCLJ01001443.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 377)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 377)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..377
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="161196cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>377
                     /note="ultra-conserved element locus uce-5187"
BASE COUNT          113 a           68 c           63 g          133 t
ORIGIN      
        1 tataaaagtg cataaattgt aatttaagta aaaagccttg aaatttttat caaaagtatt
       61 caaattagtc tctccccagg tcagctaatg agttgtcatg agctggcctc ttactgtagt
      121 gcacctcctg cagactaaga cagtgaacca tgttttcatc aaaggaaatg ctcattagta
      181 gagctttcag aaactgattt gattatagtt tcacttgtta aagtgaaata ttttcagctc
      241 attaggatga ttatgattca aggtcatctt ttgaagctag tcctgtcaat atgagataaa
      301 tgggccctca tctttttccc ttctttacgt ctgtgctttt taaactcttc tgtgcaaaag
      361 ttccatagcc ataatta
//
LOCUS       KCLJ01001444             619 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 161303cal ultra-conserved element locus
            uce-97, sequence.
ACCESSION   KCLJ01001444
VERSION     KCLJ01001444.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 619)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 619)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..619
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="161303cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>619
                     /note="ultra-conserved element locus uce-97"
BASE COUNT          202 a          104 c          122 g          191 t
ORIGIN      
        1 aaaatacatg tgctgaccct tttttaccat atacctagta gagccaaact aaatgaagct
       61 gaggtctctg tccagcattt ggaagccagt taaaatagga aatcagtgtt tctctaaata
      121 cacagagtat attaccttag tcataaaatt ggggactttc aaatctaatt tgttcagcac
      181 tagtgctgtt gaaggctggg aagtgttcca gaggaaatca cctccacgca aacagagatt
      241 agcagctccc cattgcagac atatggaaat gattgcctat aatctccggt aattgtggct
      301 gtattacatt caaatcctgt tttcaatttt cttaaacttc tagactgatt gtgttattaa
      361 atcatgctgg ctgatgtgtt taataaggac ctattaaatg tttataaaat tagggaaata
      421 aatacgggct tttagtcaga ttgtgtgatg gatctggtaa cctattgtta aaagtagtgc
      481 tggtaaaaat gtgtctaaaa aaattacacg taaaggctcc ctttaaacta agaaacccag
      541 tattcagtgc agatatccaa aatgatcttt gcagatgttt agagggccaa attagaaaga
      601 tctcactgag ctgtgggaa
//
LOCUS       KCLJ01001445             549 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 161414cal ultra-conserved element locus
            uce-177, sequence.
ACCESSION   KCLJ01001445
VERSION     KCLJ01001445.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 549)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 549)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..549
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="161414cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>549
                     /note="ultra-conserved element locus uce-177"
BASE COUNT          189 a          104 c           88 g          168 t
ORIGIN      
        1 atcaaattga aggtatgttt ttgcacagct tttatttagg aaaaatcagc aagaaatgca
       61 tctttctata ttttccattt attagaagtc tcctttcatc caagaaatat gagacctgaa
      121 ataaattgta ccatcctgca ttcaaatcct tgccagtgct aggcagtatg ctaatgaaaa
      181 caggttgata aatgactccc tgatattttc cagacatttt tctctcagaa gtgctctaaa
      241 ctgatgtagc tcaaagagaa taaggcgcat taagtcatta tatcaatttt tgttacccag
      301 atacttcagt cccagttaag agctgacagc caatataaaa caaggcaagg gcatcatacg
      361 actccatcga tcaaaccttg tcgtagatag attgcctatt acacaaatag aaccagcaga
      421 ttcagtttgt agttttatgc tctccaatta aaggataaca gggtactttc ccataaatct
      481 gctaattgca actgaattaa tttaacaaat tttgccaagc acagaaaaaa gtgattggtt
      541 aagctaata
//
LOCUS       KCLJ01001446             601 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 161521cal ultra-conserved element locus
            uce-2315, sequence.
ACCESSION   KCLJ01001446
VERSION     KCLJ01001446.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 601)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 601)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..601
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="161521cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>601
                     /note="ultra-conserved element locus uce-2315"
BASE COUNT          168 a          113 c          145 g          175 t
ORIGIN      
        1 gggaacttgt caatggaaga aaaagaactg taatcgcaca tttacatatg ctcctaattg
       61 ttgatttggg gattttctat gaatatggct tcacaaaaca gatgctgttt aagaaaaggg
      121 ggaacataat tttgtgggca atgaattaag tgtttttgtg gccctctcat ccgtagctag
      181 gagcagtttg tggaccgcgt ctgtgaacgc cgctcataat tgtttttcac acataagtta
      241 tgcaaatgag cttttatggc aactggcata acaattagca tcctccagca atattttagc
      301 aggttaattg caaaatttct aaattgtaca tctgacttgt taattaggca tgacagaggt
      361 ggtaaaatag ttatcttcag gcagtggcag ccaggagctg cttgaaatgc aaagagcaag
      421 gattgattgg atttgagggt tacaattgtg ggagcactgc tgttgtcaag tgccgctgag
      481 cagctctgct ccatcggctg cctcagagca agaaccacgt cggtgctgag aggatcctgc
      541 cagttacaaa tctgctttat ttaactctga aattctccaa atcccggctg tgggaagcgc
      601 c
//
LOCUS       KCLJ01001447             415 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 161628cal ultra-conserved element locus
            uce-1603, sequence.
ACCESSION   KCLJ01001447
VERSION     KCLJ01001447.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 415)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 415)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..415
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="161628cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>415
                     /note="ultra-conserved element locus uce-1603"
BASE COUNT          118 a           77 c          101 g          119 t
ORIGIN      
        1 tttggtgagg agttttaaaa atcccataat aaacgccgag tgaaatgtat gatttaatgc
       61 ggggcggctg ctattatgtg ctattagcaa atcggggctg agagtgaatc tttatcacgg
      121 ccgggcgggg ccgcccctgc cgccgctatt gatttgtagc cgcttgtcat aatgacacgg
      181 ggaagcaatg aatggaagat gtgcttttga taggattgaa gggctgcaaa aaaaaattca
      241 gcaagttttc tatctctcct gcctgattag atttttttct tcttttaaga gctttcacat
      301 tccaataaaa atgctaaatc agctctgaag cagaattgtt agggagtaaa tagccagtca
      361 catttaaagg aggaaaagat ctgactttac agctctggct tcacagcagc cgatg
//
LOCUS       KCLJ01001448             588 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 161730cal ultra-conserved element locus
            uce-1531, sequence.
ACCESSION   KCLJ01001448
VERSION     KCLJ01001448.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 588)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 588)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..588
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="161730cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>588
                     /note="ultra-conserved element locus uce-1531"
BASE COUNT          169 a          130 c          104 g          185 t
ORIGIN      
        1 tcgtgattac tgtgcccaca taatcaaaga tcgctccata aaatgtactc cctaaaggga
       61 cgaattccct gctcctaact ggatgtcagt cagagggatc agcaccccca gggatctgga
      121 gtctttgctt gcccttttca ttaccgtgtt gttagcattg tgttacttca tattcttctc
      181 aatgcaaatg agtaggtaat catgtgtaaa tcgtgccctc cagaaggcac atgtagtgag
      241 gttttttccc ccaaatctac cacagggatt tctcacatgg aacataatta catctctgcc
      301 atatgggctc atttatattc tattacaggt taagctaata cgactcagaa atattcttac
      361 ctcaaagtat tttgagcact gtcaaaacac ttgtcatttc tttcttgcct gtttgattgt
      421 gaatgacttt atatttattt agagatccac agtgccaact tcagaaaaac aatatcagac
      481 cagtctgtgt tgcccagtgt ccaaaaaaaa ttctctctca ttaaaccctt cttcagtaag
      541 ggcaaatagg tgggtgaaca atgagatagt aagacatatt tacctgca
//
LOCUS       KCLJ01001449             546 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 161839cal ultra-conserved element locus
            uce-5530, sequence.
ACCESSION   KCLJ01001449
VERSION     KCLJ01001449.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 546)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 546)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..546
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="161839cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>546
                     /note="ultra-conserved element locus uce-5530"
BASE COUNT          176 a           89 c          109 g          172 t
ORIGIN      
        1 agaaggctgt atgcagaact gtgtgctctt tagaacaaaa gtgctgatgg agctgtggaa
       61 atgaggcctt taagtttcta agaagcaaaa actttggcat tttgtgaaca atagaggtgt
      121 tcacagcagt ttcttccaaa ctgtatggca cttttcagct aggattgtgt gcagtttatg
      181 tcaaaacatt tcagtgaaga aatacaaata cagactaatg tttgacttct tttgttgtgt
      241 tgaactggag ccagagaaag tatttatata aaaatccact tgtgaaatgc ataaccctct
      301 caatgtgact tatatgtcta agacttacag agaattcaag ctgattgaca gaaaatactg
      361 ctcttatggt gtcagaatgt attatcatgc ttatacagaa atactttcca ccaatgtacg
      421 tgttcattgt cattatgttc tggtatactg gagacatcca ggtactgaaa tacgcaattt
      481 gctaggacct aaagctacca caaaaatata ttagacaacc agatggataa ttcagcttgt
      541 tggttt
//
LOCUS       KCLJ01001450             414 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 161950cal ultra-conserved element locus
            uce-6973, sequence.
ACCESSION   KCLJ01001450
VERSION     KCLJ01001450.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 414)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 414)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..414
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="161950cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>414
                     /note="ultra-conserved element locus uce-6973"
BASE COUNT          129 a           86 c           71 g          128 t
ORIGIN      
        1 attaatcttt tgtcaattta tatatctgta attttcatct gccctttatt cagcatgtat
       61 atttatatgt gatcacaaac ctgcagtgca gtggaaagct agatttaaat attttcagac
      121 cgactgtacc catcatttgc attccactga ctcattcaga gcaaagacat ctgagcagaa
      181 atacagcaga taaaagagaa accattaatc cagggaagat tactggcaca gaatctttat
      241 cctgtatcct ccctgaaatg agacaaagat cttactatgt acatccctct ggcttagctt
      301 cagaaagtaa gcaatacagt agtgtagaca tggtactttt taaaggcaca ttacactggt
      361 ctgaaacttc tgtcttctgg cagagctcac tggttgcttc cagaagagct ttca
//
LOCUS       KCLJ01001451             652 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 162060cal ultra-conserved element locus
            uce-3831, sequence.
ACCESSION   KCLJ01001451
VERSION     KCLJ01001451.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 652)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 652)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..652
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="162060cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>652
                     /note="ultra-conserved element locus uce-3831"
BASE COUNT          202 a          124 c          131 g          195 t
ORIGIN      
        1 ttgtagtgcc gcatgaaata tgtaatatta ggatacccaa gtcaagctca tgtctcattg
       61 acatctttgt cttttaaatg gaaagtgagg ctggagggga aaaagttggt taaaatacag
      121 aacttctgaa gtgcttaaac cagctaatgg tactagatct cattttagat tccagggatg
      181 aaaaagaaaa aaatcagact tacatccctg actgggtgtt ttccactata ggccctacat
      241 gtttatgtag agggtattgc gaacgtttgg agggatttgg gagtttcaaa aggaagaagt
      301 ttatacatta gtgctgcaag ttgcaaaaca ctgttgatat tcaaatgttt attgtgtaaa
      361 atctgggata agcttcagca tgagagctcc tttaagtgcc tacaactatt gctaattccc
      421 atcagcattg aggcttgcac aaaggcctta atccaattcc actttttttt ttcagaaagc
      481 ctatgctatt ttctctcaca taaactaaca acactatccc atcacactgc agaatgggtc
      541 aaagaaaaag ggctctgtgt ttatacttca ccaacacttt gtgtttcttg gccaagtatg
      601 gcaagaaact ttaagtgggt cccccaggcc ccacgccatc tttagaaaga aa
//
LOCUS       KCLJ01001452             691 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 162172cal ultra-conserved element locus
            uce-1633, sequence.
ACCESSION   KCLJ01001452
VERSION     KCLJ01001452.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 691)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 691)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..691
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="162172cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>691
                     /note="ultra-conserved element locus uce-1633"
BASE COUNT          211 a          138 c          102 g          240 t
ORIGIN      
        1 gtataaatta aacattcttt gataataata tgcaatgaca gcgtaatcat atgctaacat
       61 ttaatcacct tttatataca atattaccct gattcttctt taaattttta tgttgtatat
      121 tgctgtacat ttttcttact gattgattct ctttattact actgatttta tttatgccgc
      181 taattttttt tcctaagcat atattttaat gagtagtttt gttcagctaa cgtctacaga
      241 ataagagaat tcagcacacc tgcctaaata agatgcttga gatcactgag gaaagaaatt
      301 gacattttac tttaccctca gcatggagcc aggggcaaag tttgatctga aaacttgcaa
      361 attaaccaaa actgtcactc aggagttatg ggcctgaatg ctgcaaaata tgttctttga
      421 agtcctcatt tcagcaaaat tattaaaaac tttatatcta attaaaattg taactgcatt
      481 cccatttttc aaaatctcta tatcctcggg gccaattggg atgagtgaat tcgcaccctc
      541 ctctctgcag cacactgaac tgctcctaca gcaatatcag atcattacca tctccccagc
      601 tgagagggag cagccattat catgcagcat tattaatctt cttgtcttat caacttgcaa
      661 atcacaagcc attgagcctt atggcatggt t
//
LOCUS       KCLJ01001453             711 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 162283cal ultra-conserved element locus
            uce-5464, sequence.
ACCESSION   KCLJ01001453
VERSION     KCLJ01001453.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 711)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 711)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..711
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="162283cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>711
                     /note="ultra-conserved element locus uce-5464"
BASE COUNT          198 a          168 c          133 g          212 t
ORIGIN      
        1 attcaaatag aaaagcaaaa gggaagaaaa tgctttagat gtgctctttt gattttttcc
       61 aatcttgcct gaataaaatg gaatgggaga tcaagaacac tcaattaatt tcaacactgg
      121 gtgtcagagg gaagaggaga gggaggaggg gggaatatta tagatgcaca acacttaaca
      181 aatgcataga ttgaaagaag gaaatataaa aaaccatgtc tatattttat tgcactcagt
      241 aagcttttca cttgtattta tagctgcaat tatatctcaa tgaggtttgt ctacagtgtt
      301 ggcttcacgc taattttccc cctcactgca ttcttggaat agcctcggac tgtttatgaa
      361 ccagacatat tgacctcatt tacagctagc agtttaaatc cataattttt ccacccacaa
      421 tccctctttg acattccggc aatgcggccg gctcactgag actgaactaa aagtctcaca
      481 cttcattgaa caccattatg cggctttatg cttataagcc tgtttccctc agctgccttt
      541 cagctttgct ggagatccgt ttggccacag gccggcagtg attaactgga agaatccaat
      601 aaatcagcct gtcagccagc aggctctcct cactgtgtct acaaatcgac atttggattt
      661 gcactctccc ctcccccttt gctccttcgt tccctcctcc ctgcctctct t
//
LOCUS       KCLJ01001454             722 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 162392cal ultra-conserved element locus
            uce-3465, sequence.
ACCESSION   KCLJ01001454
VERSION     KCLJ01001454.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 722)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 722)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..722
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="162392cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>722
                     /note="ultra-conserved element locus uce-3465"
BASE COUNT          237 a          160 c          134 g          191 t
ORIGIN      
        1 ttcagtttac ttagctcttt aaataaacat gggctattgg aaatgttata caacaacgcc
       61 agcaccataa gtgtagctcc aactcctgtc attcctgcag atgagttaca aatctacaag
      121 aacttgtctg ctccatgctt gcagccacca ctacacttaa attagtaact acataggcct
      181 cttccaaggc atatcagaga ccagctgtgc aaggacctgt caccttcttg tcagtgaaag
      241 ttttctgtcc aaagaacttt cgtcatcccc cattcctcaa gtagctggat gtcacttgaa
      301 gagacagctg aagtcacttg caatgaatgg tctcaaatca gagctcactg cccttgtcac
      361 agaaagtctc accccgcagc taaaactgtc actgatcatg tttagatatg tacactgagg
      421 tatcagatta gaaaagagta tgcacgagat gggagtttaa aagaggccaa gttgcaagga
      481 aaatcttaat agggagaatc gaaggcttga agagttagcc cttttccaaa ccaaatttat
      541 atttcccatc aaatccaata aaaaatatct agcttctaaa aacggcatgt gtccaaccaa
      601 catattcaag aaggagctaa aactttaagt ggtactttgg ccagagaaca tgcagattgc
      661 tgagatatta tggcatctct gcagcaagtt acttcattaa taggaaaata cccaaaaggc
      721 at
//
LOCUS       KCLJ01001455             539 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 162501cal ultra-conserved element locus
            uce-4133, sequence.
ACCESSION   KCLJ01001455
VERSION     KCLJ01001455.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 539)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 539)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..539
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="162501cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>539
                     /note="ultra-conserved element locus uce-4133"
BASE COUNT          108 a          150 c           97 g          184 t
ORIGIN      
        1 gtgggcagac cctgacctgg ctggctcctg taattatctc ctgcaaggca aaacaattag
       61 gagtttctgc tctcctctcc ctcccttccc ccttcctctt cattgttctt ggcaggttaa
      121 ttaaactcgg aaaatatccc cccccctcct aagcatgaga ctttttctct ttatatttgt
      181 atttaattaa ttcctgcaaa ggctctggct atattttttt ggtattattt ctttctttgt
      241 ctctctcatt gttaatcctt gcatattcag tttttctcct cccttttccc ctagatttga
      301 aattctatta ccatttcaga aggcaggcgt ttgaagagaa aattgaatac ccgtccagtc
      361 ttgataagaa gggacatttg gtactaacgg taatttgtga agcagatttc ctcacacccc
      421 gttccccacc tttctccccg tgtttgctgc ggatgatgtg ccatccctgg attactgcgt
      481 cagcggccac gtgggtgaca ggctgtgtct gacacctccc gtgcgccttc acacccctc
//
LOCUS       KCLJ01001456             677 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 162611cal ultra-conserved element locus
            uce-5804, sequence.
ACCESSION   KCLJ01001456
VERSION     KCLJ01001456.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 677)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 677)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..677
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="162611cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>677
                     /note="ultra-conserved element locus uce-5804"
BASE COUNT          206 a          135 c          119 g          217 t
ORIGIN      
        1 ctttctctaa gaaagaggaa agaacggggt ggggaaagtt cagtatttca aaataattgt
       61 tgaactggaa gtcttcccac tataaaataa acactgacat gttgaagact aactgtatta
      121 tttttccttg ttgcccctaa tagatagttt gctcccatcc atctgattgc attactttgc
      181 tcaagttaag tttgatcgcc ttccaagtac tggcttcaaa ggtatcaata tttcatcagg
      241 tctttgttca gcactggttt tagcttttct taatggtgca ctttaccagg cagcattttc
      301 atacatcatt aaacagcagc tatagcactt gtgccctgtt tctgatttac cgtagatagt
      361 aatgtttaag atcacattaa acaccacaca tgctctcagc tatttgagca acatcagagt
      421 aatgaacagt caatagtctt actaaattag taccctttgg agctctcgtt actgaatcaa
      481 ataagtatcc ttggtcctct ggagaaggca attctaatgt gaaataatga atttagtgtc
      541 taatcttttc ccttctgaca ttcaagagta aatgatataa attatgtaaa atagatctaa
      601 tacttccagc agtcctgcaa gacactgctg gataattaca ctgagtggct gggacgccaa
      661 ggtccagcca caaacta
//
LOCUS       KCLJ01001457             683 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 162723cal ultra-conserved element locus
            uce-63, sequence.
ACCESSION   KCLJ01001457
VERSION     KCLJ01001457.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 683)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 683)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..683
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="162723cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>683
                     /note="ultra-conserved element locus uce-63"
BASE COUNT          259 a          115 c          110 g          199 t
ORIGIN      
        1 cttctgaaca atctttcccc tgtaattaga accttttcat tgtttaccaa ataaacagaa
       61 agaaatagaa acatattact gcagcaggat attgtaccca cattttgcac acctgaaaaa
      121 atatgttaat acaaataatt gttgtcatgt tagcatcact ggtttcaagc tgtctgaaac
      181 aattttacat tctcaataag gaatatttaa catttgaacc aaaaacagtg cagcacgaat
      241 aattaaaggc ttaagttaaa tacatagaca gtcatttaaa tttagatctg caataacatt
      301 tactattatt ctctaaggct ttgactgtgc ttgacagaaa caaagtactc tgggattaat
      361 ttcaagaaat ggtgccaact gtgcgcaatt tgctgtaatt aagacatgaa agagtactaa
      421 atattcagat taaaagaagc atgatggagc atgatagaga atcaaggtgt ggcatcaagc
      481 caataaagaa cagtcagtca tgaatgctca atagtgattg atatgaaact cctataaact
      541 tgtagcatgt acttcacaac tgtgcagata acatcatggc actgtgtttt aagaaaaggc
      601 ctcttctaaa tccaaagtcc aaagtgtgtg taacattttt aaacaagccc aataatgaca
      661 caaataagat gcttaaacaa tga
//
LOCUS       KCLJ01001458             510 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 162829cal ultra-conserved element locus
            uce-7729, sequence.
ACCESSION   KCLJ01001458
VERSION     KCLJ01001458.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 510)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 510)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..510
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="162829cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>510
                     /note="ultra-conserved element locus uce-7729"
BASE COUNT          151 a          102 c           94 g          163 t
ORIGIN      
        1 ggcaggtctt tcatatgaag gctttggaaa cattaacatc cagcgtgttg tcaggttatt
       61 agtgctgttc tttttgctct gaacagaaag agagagcctc tattttcttg tttcccttct
      121 tctcctgcag tatctgtgct gtgagtgcag tctgaccact atccccagtt gtctggcatg
      181 attaattaca gcatctgtcc tgtcagaagc tataatgaag aggtcttgat aaaaattgca
      241 aattaccact ggcaacaatc ttaaactgct tatgataaaa tgaaaattaa aaacagcaag
      301 tgtcaagcct gagcagaatc ctaatcctgc taccatgctc atggaataga gatccccaaa
      361 aagttgcagc cagacttgag ggaccatgtg attttcttca taatgaattc atctttccat
      421 atttcatcat cctcaggtac tctgcttatt atgtacaaat attgaacagc aagagattct
      481 aattataaat ttatagattt cttggagcag
//
LOCUS       KCLJ01001459             591 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 162935cal ultra-conserved element locus
            uce-6473, sequence.
ACCESSION   KCLJ01001459
VERSION     KCLJ01001459.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 591)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 591)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..591
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="162935cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>591
                     /note="ultra-conserved element locus uce-6473"
BASE COUNT          193 a          116 c           97 g          185 t
ORIGIN      
        1 tttaggagta agtttggggt ttgaggatgg gacaaaccac ccatcctttt gttttcacca
       61 tccagagagg aaactgaaga gtctctgtga tctaataaac cagatattga tacctgcaaa
      121 acattctgta aatctccttc atcccagcgc tttcaattac accaaaaaga tttttagaag
      181 ctttcaactg tggacttttg tcttgttgaa tgaacttcag ctacactaaa ttttaagtaa
      241 atttgtgatg actgagcaat atacattggc tgagctagaa tccaataacc cacaggacaa
      301 attaattttc aacaaaaagg gcagaaacct caagtgccat gagtatatgg aatctcagtc
      361 tatctctctg gagccatttt tgcaaatcac tacagctatt cataatctaa atcagtctcc
      421 tttagcagca gaaagatctt ttttcatgac aaaacagaag atgacattca ttagtgccta
      481 acttgcataa gctaccttaa atttattggt gctcttctac ttatctgggt aagaattcct
      541 ttgtctacag ctataggaaa attccggacg tactacttaa aaatataaat t
//
LOCUS       KCLJ01001460             333 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 163146cal ultra-conserved element locus
            uce-7386, sequence.
ACCESSION   KCLJ01001460
VERSION     KCLJ01001460.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 333)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 333)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..333
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="163146cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>333
                     /note="ultra-conserved element locus uce-7386"
BASE COUNT          119 a           69 c           87 g           58 t
ORIGIN      
        1 caagccttgc ttgttcaaaa gtcagggaaa agccaagccc tgggtgggtc agaccaaaac
       61 gcaaaagggt aagaaaaaaa gaagaaaggg gaagggggaa aaaaaaaaga aaggaaaaca
      121 acaagaactt gtttgaaaag aagatcttac taatttcttg cccggtgtgt cgcccaaggc
      181 tgcgacaatg gcaaagtact gaatgacccg cttggtgttt acagtcttac cagcaccaga
      241 ttctccgctt agagtgacag aaataagagt atgaggcaaa ggcacaaatc ctccacagat
      301 aagggcgcca agcctcggcg aggctgcagc tct
//
LOCUS       KCLJ01001461             768 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 163242cal ultra-conserved element locus
            uce-1242, sequence.
ACCESSION   KCLJ01001461
VERSION     KCLJ01001461.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 768)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 768)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..768
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="163242cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>768
                     /note="ultra-conserved element locus uce-1242"
BASE COUNT          223 a          150 c          160 g          235 t
ORIGIN      
        1 tgggtagaaa tattttcaaa tcaaagaaca actgacatat ataaaaatga tgtatgtttc
       61 ttacatagtc cacagggaga attctgcagg cttgctatga tctctacaat ttgcctccgg
      121 gcaaacgagg ctttgggata ttctattatt cctttggtct gtttatcatg gaaactgatg
      181 tacaaatcga aggttctttt ggacctctcc tttcggtttc ctggatgtgc tgagaatgaa
      241 cttatcacct gtcctcacct tcagcgaagt gctttgggga aggttcagtg accaataatc
      301 aattattatt gagaagcaat caattgctaa tctccataat tatgcacatc taaacactat
      361 gaacaagaaa gagaaacaaa gctgcactcc aagcattgcc ttgttagcag tattttgtta
      421 acacaggctc taaaaaaagc tgccgcagct ggtagcacaa atgtgtttcc agtattcagg
      481 ccatcaacgt gattcgtcgc taaatgtata gaatcagctt cttgctaaaa actacaatta
      541 caggtgatat acagattgaa atcacagggc tggtttgtcg aagaaaattg tcctaatgat
      601 gggttttcgg atcgggaatg cagctctttt cttcctctgt gatgggtact gaaggcagct
      661 gcacctgcct ctgtgctgta ttctgccgca cttaatgata tctgatgata tcattaggca
      721 aagtgttcat aaacagatgt tgagcctgtg cctaaatgct gtcagatg
//
LOCUS       KCLJ01001462             634 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 163352cal ultra-conserved element locus
            uce-1367, sequence.
ACCESSION   KCLJ01001462
VERSION     KCLJ01001462.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 634)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 634)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..634
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="163352cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>634
                     /note="ultra-conserved element locus uce-1367"
BASE COUNT          191 a          143 c          108 g          192 t
ORIGIN      
        1 tacttatact gccagagcca tgcccttttc taagtcagca gggtacagct ggcacaaatt
       61 cagccaagca atcagattca taccccttca caagtctttt aaaaatgctg tatctcaaac
      121 cagaggctta ggcttgagaa aggtgtccaa cacctgactg ctcctatcaa ggagtattac
      181 ctgctcacat tgatttgcag caaagtattt ctcagtaagc atttccactt aacatttact
      241 ctcatggaac ctgtgtagtg ggagatattt atgagttgct ttcagcttaa aaataaatca
      301 cctctaattc ctctaagcga aatcaatcaa aagtctttaa aaaatggact ggttgtttgg
      361 tcgattctgg cagaaaagta aacagcactt cagcttttct ccaccattaa ggtctaaatg
      421 gcctagaaag taaatcaata tctccagtca gccctctggc tattgtttag ccagtagata
      481 tggatttttt ctagcttact gcactccttt gggactaacc tgtaatcctc agagagtaat
      541 aataagttca ttatctagtt cagctctctg ttgtacattt aaatggacca catccatcag
      601 cagcacttgt taaaggacaa tgacatccca ttca
//
LOCUS       KCLJ01001463             423 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 163461cal ultra-conserved element locus
            uce-3181, sequence.
ACCESSION   KCLJ01001463
VERSION     KCLJ01001463.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 423)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 423)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..423
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="163461cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>423
                     /note="ultra-conserved element locus uce-3181"
BASE COUNT          133 a           66 c           87 g          137 t
ORIGIN      
        1 aatcataaga agaatgtaat gaaagtggag ttgcttagca tatatccctg cttgaaatgt
       61 ttttacaagg gcatccttgt taccagagtg aaaaaaaatc gtaaatgtta actagaaatc
      121 actttccttc atcccacatc tttcccctta gtaaatgaag acaggatgaa cagctaaaat
      181 tactaattgg tttactgatc agttgtagtt tgttcgattg atttgcaatt aattctggtt
      241 tgtggtgcat agaagaggaa ggttggcgcc aacctttgag gcagctgata ctcaatatcc
      301 tccaagagag ctgtgggtca gaatatcaat aatctgtttt gaagcagctc ctaaatgtat
      361 tgagattgtg tcttgtgcat ttgtaaaagc tctaggggat aaaatctgca ttttgttaat
      421 aaa
//
LOCUS       KCLJ01001464             746 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 163680cal ultra-conserved element locus
            uce-4883, sequence.
ACCESSION   KCLJ01001464
VERSION     KCLJ01001464.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 746)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 746)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..746
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="163680cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>746
                     /note="ultra-conserved element locus uce-4883"
BASE COUNT          237 a          162 c          128 g          219 t
ORIGIN      
        1 tttatatttt aacatctaga ttttgaggtc cagttacaag tgtttaccat agaaaactcg
       61 gtcaagctgg tgtttgacct ttgacaggaa gctgccctca ctccagctag tcccaacaaa
      121 ctaggcccaa gacaataagc tgctttatag ctattaggta ggccagtgtg tttctccagg
      181 aagacctcaa gctgaaaagc caacatgctt gacaaccaca gccaaggtac caagggccca
      241 agcactagac attggaaaac aaatggaaaa gcacacatgg ctacatctgg aatcctaatg
      301 ggccaccaat ggttcccagc taaaggaaga attaccaatg ttattttatc atcccttgtg
      361 ctaacttagc tgtttatgta cagcaataaa tgatttttta aaaacatatt tgggtcatta
      421 tgtcatatac caccagcaag tacgattgtt ttattgtgct tggagtcaaa atacactgct
      481 atacccagat gtgagggaag ttcaaaacct ctagtccttc tgtattcatt cctgttggac
      541 aaatggatta agtttttaaa agggaaactg agaattttta tggcctgtac tcccatctca
      601 ctagtaaaat tcgcactgat attttcctat agaagtttgc cttgccaatg ataacattaa
      661 atattacctt agtaagtaac ccaaaatttc aaccaacagg aaatgccaca cattttattg
      721 tcaaaacatc cccattctct tcttcc
//
LOCUS       KCLJ01001465             479 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 163792cal ultra-conserved element locus
            uce-7397, sequence.
ACCESSION   KCLJ01001465
VERSION     KCLJ01001465.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 479)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 479)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..479
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="163792cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>479
                     /note="ultra-conserved element locus uce-7397"
BASE COUNT          138 a          141 c           75 g          125 t
ORIGIN      
        1 aaggagagag tttaagagct gttgggctta acagtggttt gtgctgatca cacttgaatc
       61 tttctgcaaa ggcgtacatg caaaaacaac aaccactaag taaccacttc acatctgcca
      121 ttaacgttat taaactcctt acaagtagta tctaccccac cttccccact acacacaaac
      181 atacacacac ccccgagctc tgcaacacag cagctaggag ccaagacagc tctcctctcc
      241 tcactgcagc aaccacattc attcctgtta aggggttaac gattcatttc cactacttct
      301 ctcgagaaaa cctacaatga aaacattggc tcacgaaagc gttctcactg ccagaatgcc
      361 acagcgcgag tgaaaagtcc gttttgtttt cattacatct ctgggatttc cggcttaact
      421 cctgagctta gacaccaaat ccctagatac cccacccacc cagtttttcc tcttttttt
//
LOCUS       KCLJ01001466             688 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 163903cal ultra-conserved element locus
            uce-4304, sequence.
ACCESSION   KCLJ01001466
VERSION     KCLJ01001466.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 688)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 688)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..688
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="163903cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>688
                     /note="ultra-conserved element locus uce-4304"
BASE COUNT          202 a          134 c          142 g          210 t
ORIGIN      
        1 gctgtaaatt ggatataagc acttgccaaa tgcaagggga gtggtttcca ctttggtctt
       61 tgtgtttatt gtttctgcac tggcaacaga attgaattca tagcagcagc aaaacaaaga
      121 cagctctgag ttatactgta attcactgct ggagatttat gaatattatt ttcccgtaaa
      181 acccagcacg ctttactact tgtaacctgt aagtggcata aaactgtgta cctagcagga
      241 tttcctactg cagtgagtgc caaacaccag tgtaagaact gcactacatg cacatgtggt
      301 tatagactat gcataaattg tgcctttatg tttaacttgt ctaatcagct caccatatca
      361 aaacttaata agtagctgct tctcatttaa aggtctagta aaacttcaat tactatggct
      421 gtaagatgcc ttgtttcgaa aagagcatta aatagtttta tagatatggt tagaagatct
      481 tgtgtagttg tttttatgaa agtgaatgag ttcattaata atgggagtca gagacagaaa
      541 tacaaattgg gagtgggtga agtatcctgc ctttgcatcc cttcctcaca ggtaagtcac
      601 ttctgccagc catggccccc cagtaataca cccagaggtg atgctttgtg agccactctt
      661 cctctcaggg acagcactaa agggcctg
//
LOCUS       KCLJ01001467             707 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 164013cal ultra-conserved element locus
            uce-172, sequence.
ACCESSION   KCLJ01001467
VERSION     KCLJ01001467.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 707)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 707)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..707
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="164013cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>707
                     /note="ultra-conserved element locus uce-172"
BASE COUNT          169 a          154 c          140 g          244 t
ORIGIN      
        1 tagacctact ggttcctgct tttttatttt tttttttttt aatatgttat gttcgtaact
       61 tctgactgtc tgtgttgagc caatcttacc aactatcaat tgtttcctgt ttctctactt
      121 ctttacaaaa aactcttaat gggaaccctg gcactgtctg tcttctctgt tctgcagaaa
      181 tgttgaagga gttgaaccag caacgcagag cgaaagagtt tacagacctg aaaattattg
      241 ttgaaggcaa agagtttgaa gtccaccaaa atgttctagc ttcctgcagc ttgtatttca
      301 aggacctgat taaaaggttt gccttccttc cagctgtgat ctgctctgtt cttttgtagg
      361 gcgcatttgt gtcgcttttt tttcctcccc tctcttgcag gtttatgaag attgaatctc
      421 ctgtcacaga gccagtagcc attctttcca cctcctctga atgtatttcc aaactgaggc
      481 tcagatccat ttgttacaca tctgactcgt acagtgtaat tatttctgat gagtagaggc
      541 tggttttggc cgaagacagt gttccaccaa tctaagattt tgctaatggt gattcagtct
      601 acaactactg ctgtcaatgt ttgcaaggga ctctgtcaca cacgacaaaa gtctgtgctt
      661 caggctgcag aaagccatca gcattcaggt gaacggtgct gagacat
//
LOCUS       KCLJ01001468             498 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 164111cal ultra-conserved element locus
            uce-4079, sequence.
ACCESSION   KCLJ01001468
VERSION     KCLJ01001468.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 498)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 498)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..498
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="164111cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>498
                     /note="ultra-conserved element locus uce-4079"
BASE COUNT          163 a           97 c           90 g          148 t
ORIGIN      
        1 cagaatggaa agttattttg caccctgctt tagagcagtt tggaacagta cacaaagcca
       61 tttcattatt gcttttggag ccgacaaact tcgtgttact tcactgcaca atacactgaa
      121 ggctagtaat tactgggaca tgtggtaggc gtttatcacc actaacatca cacaacccac
      181 tctatgatca agataaaata gggcaagtgg ttcaattaaa ggcacattct ttggtgcaca
      241 acaatagaag gcttgtgaca tggcaagatt aagaaaagac tcaaatatct ttaaaactac
      301 ttattatcat cagttaaaat gtgcatgtct gacctttatg gtaatcagta atactccatt
      361 tgcacactat agaactaaat aagctttatt ttagacacaa agagttactt gtggtggcct
      421 gcagttaact tagctgatct cagagcttat gcttgcaatg aatcaatggc cataatgata
      481 ggccatcatc tttatcac
//
LOCUS       KCLJ01001469             421 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 164218cal ultra-conserved element locus
            uce-2162, sequence.
ACCESSION   KCLJ01001469
VERSION     KCLJ01001469.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 421)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 421)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..421
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="164218cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>421
                     /note="ultra-conserved element locus uce-2162"
BASE COUNT          114 a           79 c          106 g          122 t
ORIGIN      
        1 agacgctaag atgaaaacaa aatagtttac atatggggtt ttgatggaaa ctagggctgg
       61 gttttaagtc aaaactcacc atctcaaaac cacttctttt catccgcctg caggacttga
      121 ggtaagtacg tatgcgtttt ctggcacgct cttgatactc agggaattgt cgcctgcatg
      181 agtcaatgat agcctggatc ttttctttgg gctgcttaga gattgggacc attcggtcca
      241 agttttcatc tacaaacagc ctgacaaaca tctgttggca agagggagac agaggagatg
      301 ggtttggagg gcagctctct tctcttccta gcttcctggc ttgattactg ataggaagac
      361 atttgtaatg ggaagccaga aatataaagc aaacagttct ttaaagggtt atttggggtg
      421 g
//
LOCUS       KCLJ01001470             681 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 164427cal ultra-conserved element locus
            uce-1917, sequence.
ACCESSION   KCLJ01001470
VERSION     KCLJ01001470.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 681)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 681)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..681
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="164427cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>681
                     /note="ultra-conserved element locus uce-1917"
BASE COUNT          201 a          122 c          152 g          206 t
ORIGIN      
        1 cagacatctt taggatctag ttttcaaact ttcagtagtg cttcgataaa tatattttgg
       61 ttgttttttt aagtgggctc tttggatcca atttcttgac attccctggt tgacaggtag
      121 aaaaccttca gattttaata acaatgaaaa agtgtacaca cttcgtggtc aagacaggac
      181 agtgggtaca aagtagttat cttaaggcaa aatttactgt tagggaaaat ggaacattcc
      241 ttctgaactc acgaactggt agtgcatgtg caggttggtt gtagatggtt gctacaataa
      301 ggcttctttc atacaggtgt gtttatgccc caggcttgct ggccacagtc cattccattt
      361 acagaagctg aattaaacaa taactaccgc attgcaaaaa gaagaaggaa aaaaaaggtg
      421 aaaggagatg cctgagagct ttgttagggc caagaaaaac cctgttgcag ttgtcagagc
      481 ttgttgatgt tgcagagaat ggcacttttt tttttctgct ggattttgtg gttctgcctt
      541 aggaaagaaa gtaaaataga acggaagaac aaagtcctac tctataaatc agcagctgct
      601 ccttgccaga tcaaagtttt gctcctggac tacttgtcca ctttaggtgc ttgacagaca
      661 gctaacagct ggcctgttac a
//
LOCUS       KCLJ01001471             502 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 164540cal ultra-conserved element locus
            uce-7541, sequence.
ACCESSION   KCLJ01001471
VERSION     KCLJ01001471.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 502)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 502)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..502
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="164540cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>502
                     /note="ultra-conserved element locus uce-7541"
BASE COUNT          188 a           95 c           83 g          136 t
ORIGIN      
        1 accatctgtt aatcttagtt gtgattaaag aggtaatcct aatgcccatt attcctaatg
       61 acaagaccaa gcaggcttaa agcattagcc gtcggaggcc aaagagaaga agcaatgaag
      121 gatatcagca atcttagcca caattgagga attgggccgt cctctacaca acaaaagtga
      181 tacaaaagaa ttacaccctc actaaagtct atttcctcgt ataatcacac aaaatgattt
      241 ttcttaaata tgataataaa tcacagctaa aaatcaatgt ggcagggccc aactgctatg
      301 gcctgataac gcatcaatca atatttagta tttagatttt aattaataca tagcaaagca
      361 gagacctttt aagagagaaa tattatctca gataaaaaat tctgcactgt tagcatgcaa
      421 aagttgttgc tcatatctgt cattgatcaa tctgctagag ttgtgattaa aacccctcga
      481 aaatatcaga caagagcata aa
//
LOCUS       KCLJ01001472             700 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 164648cal ultra-conserved element locus
            uce-6054, sequence.
ACCESSION   KCLJ01001472
VERSION     KCLJ01001472.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 700)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 700)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..700
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="164648cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>700
                     /note="ultra-conserved element locus uce-6054"
BASE COUNT          224 a          123 c          125 g          228 t
ORIGIN      
        1 aaccatgtct caggagattg cagtgtacat ccagcccaca gtaataatga ttcatataca
       61 tatatgtgta tatgctttat tgctaccttt agctggatta aaagcaatat atcaaatttt
      121 atatttctgc ttcttttatt agctttctag cacttgatca gctgatagag gcaataatga
      181 aatgtttttt tataaactgg agtttgtaag tcctgtcctg agaatgtaat atttcaaaaa
      241 ataccctaag ctttaaaaaa ccaattacag aaacagcatt aaaaatgcca agcactgggc
      301 agaagcaatt ctggatcagt ttaaaaaagt gattgatgaa actctaatct gagctgaagg
      361 aacagtttca cgacaagctg tgaccattcc acacacttca ttagctgcca taattagcct
      421 ggtgtttcaa tttgttagaa ctggtgggga caattttact cagaatgcaa acatcaaaaa
      481 acagggtgcc tcagacttca gaagaggctg atgagaagct tttctagtct ttgttaacta
      541 aaagattaat tacagctgat gggaggctgt attctgattg tcactctgtc tatgtgcatt
      601 acttttagca ttagaagaaa gacatggttg acactacact gctcaatcaa gcagctttgc
      661 attagtgcaa tatgcaatgt ttttatttct ctttttcctt
//
LOCUS       KCLJ01001473             475 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 164758cal ultra-conserved element locus
            uce-1706, sequence.
ACCESSION   KCLJ01001473
VERSION     KCLJ01001473.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 475)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 475)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..475
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="164758cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>475
                     /note="ultra-conserved element locus uce-1706"
BASE COUNT          129 a           82 c          116 g          148 t
ORIGIN      
        1 gtagtcattg ctgggtgaca cagcaaataa tttttgtgtt cccgtgtaag tactgaaggg
       61 cagttgtctg ttttttgctg tcttatttcc acagggaaaa ccatgaaaca gagaagccag
      121 cactgaacaa tatagcggac aatacagtag caatggaggt gacgtagttt ccgtaggagt
      181 gggactgcag ccttgggaac atgtttaggt gctatgcatc agtagcattt tgaatgcaag
      241 ggatgatgga atgccgcaca ttgcgtttcc atggcagctg tggggacttg acagcaatgc
      301 acatctctca tgctttggtt tttcttttct tactgttaat aggaaagaat caacatctgt
      361 aaattaacaa tacagcaatt atctgtacag tactgcatat ttgtaatacc cttgtatata
      421 tgttacttga atacaaaact gttcatttgt gatgctttgc acttggggtg ggggg
//
LOCUS       KCLJ01001474             432 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 164864cal ultra-conserved element locus
            uce-2671, sequence.
ACCESSION   KCLJ01001474
VERSION     KCLJ01001474.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 432)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 432)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..432
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="164864cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>432
                     /note="ultra-conserved element locus uce-2671"
BASE COUNT           89 a          120 c          118 g          105 t
ORIGIN      
        1 gcaggtcgcg tctcccacgg acacaagcaa ctttgacagc ttcccagagg acagtgacga
       61 gccaccccct gacgacaact caggatggga catagatttt tttctcttac ctgcttctgc
      121 cttgccgagg acagcttttc ctgggacgtg gctgccagcg gaacgggaag accggaatgg
      181 gggaggattc gtgctcgggg tcaccacgat gccttgattg atgctgctcc tccagtggca
      241 ttaggacttc tgacaatagt gctctccatg ttttctgttg gaacgtgacc tggcggtggt
      301 cctggcacct gtggccacga ttagcagata agaggcactt aattccagct gctccctagg
      361 atcagtagta acttatgaag tgctgcagct actccagttt gggctattcc caccctctga
      421 gctccacagg gc
//
LOCUS       KCLJ01001475             461 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 164976cal ultra-conserved element locus
            uce-7971, sequence.
ACCESSION   KCLJ01001475
VERSION     KCLJ01001475.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 461)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 461)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..461
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="164976cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>461
                     /note="ultra-conserved element locus uce-7971"
BASE COUNT          168 a           70 c           83 g          140 t
ORIGIN      
        1 gtagctgtct ttacattaac cacatttagg gaaaacaaca actttaaact tcccatataa
       61 gtgtcagtgg gggcacttta caaatgtctc tcttcacagc agaaagcata gcagagagct
      121 atatgagaag tgacagggaa tgcattttat tttaaaaatg gaccagtagg acaatgctaa
      181 tgagtagatt tgccaataaa agcaactaga cagttcagta aaatgaatta aattaatctg
      241 tcatccccag ggaacttaaa cagggcatga aatagggaaa cagcgtcaat tcagagcttt
      301 ttattgatgt gttgtgctgg atcatttgat agaattacaa aatttgcagt tttctattga
      361 tcataaattc agtagctatc tctgtgtagc ctttattcaa tatagtataa aatcaaatac
      421 cattgaaatg caaacgtaaa gattattttt gaaataataa t
//
LOCUS       KCLJ01001476             441 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 165082cal ultra-conserved element locus
            uce-2840, sequence.
ACCESSION   KCLJ01001476
VERSION     KCLJ01001476.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 441)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 441)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..441
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="165082cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>441
                     /note="ultra-conserved element locus uce-2840"
BASE COUNT          114 a          108 c          106 g          113 t
ORIGIN      
        1 gtttgtagga gaagaagtca gagctgaggc cttgaaagag gatcacagat gcctcatgga
       61 tgtccctctg aaataagcag gtggctctcc agatgctggt taataactca atgacccata
      121 tcttccagat aatcgttatg taccttcagg tattagaatg tgaacgtaac caacacctgg
      181 tccagacctc atggtaagtt gaaagagacc agaaggggca gtagcagaaa tatgtcactg
      241 ggcaggaatg ctcagcagtg cttggggcca ccccagacag ctccactgtc cttggtgtgc
      301 cccaaactac ttcccaaaag ttgagcggcc tcttgaggca gtgttttaat ggtaaggtag
      361 ctttccaccc tgactcctca cttccctcct ctctgtttcc agctgaaaaa tggcttttcc
      421 cagggcctga gtttgatttc a
//
LOCUS       KCLJ01001477             646 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 165189cal ultra-conserved element locus
            uce-6890, sequence.
ACCESSION   KCLJ01001477
VERSION     KCLJ01001477.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 646)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 646)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..646
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="165189cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>646
                     /note="ultra-conserved element locus uce-6890"
BASE COUNT          177 a          128 c          132 g          209 t
ORIGIN      
        1 ggaccaaatg tcagataatg agatgaaaac tttatattga actttctctg ctcattttca
       61 aatttgccaa acatacttgt gtcctcgggt aagtggtgct tccgagggtg ccacagatgc
      121 caaaccctga taaaatcttc cctatcttgt taatgaacac aaacagttgt tccccatctg
      181 ctgcctctgt ctgaaaggtt agttccttct tgatcacaaa ggacataatt attgtctgca
      241 gaggagtcaa gtacaaagac agtccatcca gtctgaccgc tactacactg caggccacca
      301 aagattaaca gctgcttctc ctttgattag gttaggtaat aacagttact ttagttaata
      361 attggatgga ttcccaggcc atgtaattca ggtttaggct gtcatttttt gctggcatgt
      421 agctgagctg tattattgga acagagcctg taatcctatt agtcagttgt cactcaagcc
      481 gtaggagaga aggcaaattc ggatccatta aggtgttgta acaggtatca gccatgcttg
      541 cccactgtgt agggagctgt cttgattgtt tgtaaggatt aattttttta attcataatt
      601 aatccacaaa atggttacat ggtttgtcta atttatcacg gtttct
//
LOCUS       KCLJ01001478             670 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 165301cal ultra-conserved element locus
            uce-6608, sequence.
ACCESSION   KCLJ01001478
VERSION     KCLJ01001478.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 670)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 670)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..670
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="165301cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>670
                     /note="ultra-conserved element locus uce-6608"
BASE COUNT          193 a          140 c          147 g          190 t
ORIGIN      
        1 tttttccaat tgactaagtt tggtctgcag tggcccatga acatggtctc cagtgatcta
       61 ttagtaaact gggatgtagc cttcctttca ccggcctgtt agctcactct cttttcatgt
      121 tggaatatat tagaaggagc atggcattca aggcaacgaa atgccctatt acagagcaaa
      181 agtacaggtt ccaatttcgt gaggctacaa agactcagga gggtatgaga aggcagtcac
      241 acttcagaaa aagacaagct gctgtggaag acctttcctt tctagtttgg ggaaaagaga
      301 aacttctgat gcgctcactg gaaaacagac tgcataatgg agcaagtcat gtggattgcc
      361 cagagcctcc ggagaaataa gggagcaatt tctattctgt agttgatggc tgtctgaaat
      421 tctattcaca aatccaaaca gaaacaaagc ctcaggaggt cacaactgct tcctcgacgt
      481 ttgcataatg ggcagcttga agacaacgtc taggatacct gctgatcaat ttaactactt
      541 caacatgttt tgtttgtatt ctgtttatat ttgatgcagt ttgctgacaa gtgcaagcta
      601 ggcctgagaa acccacttgt caggttgatt tatgagcaca tcaaactgta actttctact
      661 cgccacttca
//
LOCUS       KCLJ01001479             537 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 165413cal ultra-conserved element locus
            uce-7234, sequence.
ACCESSION   KCLJ01001479
VERSION     KCLJ01001479.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 537)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 537)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..537
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="165413cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>537
                     /note="ultra-conserved element locus uce-7234"
BASE COUNT          198 a           93 c           80 g          166 t
ORIGIN      
        1 tactttagac agtaaaaagg cattactttg ttacatcata taaacatgta gatttgattc
       61 tctctttact catgctgtaa aaagaaagtt ttaaagtgtt tagccatacc tgaaaatgta
      121 aatgcccgag cctaatgtaa tgctgaaaaa aaattaagat aaatgatact gcatccttgc
      181 cacaaactgc agcttgtaca aaattcactt tagttattat actgtgaata cgtgtgctaa
      241 acctcctctg tgtatgcaca atttatgttg aatgcaacat gaatcatttt aatagaccaa
      301 gcaaaaagtc cccaaagtca attttcaaat tatgaacctt ggaacagaat atagcaacaa
      361 tgaacaacaa atagttcaga ttttatgctg aactacaaat gaaccattaa aggtacagta
      421 tactcattca gtttttcctt atcatcgcag tggctaaaaa gcataacaag aatatttctt
      481 aaaggtcagc tctaaatttt accttattaa gaggcacatt catgagagct tgtgaag
//
LOCUS       KCLJ01001480             602 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 165520cal ultra-conserved element locus
            uce-2801, sequence.
ACCESSION   KCLJ01001480
VERSION     KCLJ01001480.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 602)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 602)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..602
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="165520cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>602
                     /note="ultra-conserved element locus uce-2801"
BASE COUNT          189 a          111 c          111 g          191 t
ORIGIN      
        1 ttgagataca ccatggctca tcttttgtga agtgacttaa ctgtctaaca taaagggcat
       61 taggtgtctt tctaattggt ttaatcttaa ttgggttgac ttaattgcag aaatctctct
      121 gaggagatga ctgtctctgt ctttcatctt ctccccctgt ataaacagga gattaaaccc
      181 ccactcattt tctgcagaaa aacgccccta cacctgcgag gtttgcaata agtccttcaa
      241 acgacttgat caagtgactg cacacaaaat aatacacagt gaagataaac cttataaatg
      301 caagctttgt ggaaagggat ttgcccacag aaatgtttac aagaatcaca agaaggtaaa
      361 gcactctgct gttgttgttt acaggtctgc cagcctcaga tttgcagatt tttttttctt
      421 ttaaatggct catcgttaag ctctgccatg cttataaaca tgggattaaa gtattggaga
      481 atgtagtttt agtgtttgtt atatccaaaa tttcaaaagg ctgaaccaat tctagtaaaa
      541 aagttaaata agagtaaagc gtagttgctt ggttaaaagc atcaaataaa tcccattttg
      601 ac
//
LOCUS       KCLJ01001481             602 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 165626cal ultra-conserved element locus
            uce-519, sequence.
ACCESSION   KCLJ01001481
VERSION     KCLJ01001481.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 602)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 602)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..602
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="165626cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>602
                     /note="ultra-conserved element locus uce-519"
BASE COUNT          186 a          115 c          102 g          199 t
ORIGIN      
        1 ttatgcctgc aatattttag atccgtttgt ttgaaaaatc tgtcttctgt tttgttttca
       61 taaagaatga aaaccctaat ggagtcccga aatctgttaa tggtactaaa attataacag
      121 tatagcaaaa gaaaaaaccc cacacagtaa agtctatatt atatattttt tatgtcttta
      181 aatggaattt acagttctcc ctggcaatgt gaatgaacat cctataattt agtcaattta
      241 cagattacag gttcaaattg accttgtagc ccataaaatt gctcatcttc agtgcaggat
      301 tagaagtggg aaaagaatgt cataactgta tttaaggaat ttaccataac aatggaaagg
      361 aggatatgca tgcataattt tagccactct tgctcacatc acagttttca attctgaaac
      421 aatgcatatt ctgtgctctt ctcctggtta accatggtgg agactgtttc aatttactca
      481 cccacagaca tgacacttgt attccctcat cccaaggtgc ctcttgacat ggtttctggc
      541 atctccaagc tgagctgtag caaagtggca tatcttgcac ttgaatggct ttgatcctaa
      601 gt
//
LOCUS       KCLJ01001482             444 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 165733cal ultra-conserved element locus
            uce-7244, sequence.
ACCESSION   KCLJ01001482
VERSION     KCLJ01001482.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 444)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 444)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..444
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="165733cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>444
                     /note="ultra-conserved element locus uce-7244"
BASE COUNT          141 a           51 c           90 g          162 t
ORIGIN      
        1 agagaatttc actgattttc ttaagcttaa atggaatttc agttaatttt aaagtaagat
       61 ctgaagccta ggattgagtt ttgagtatcc atgtttatac tttgttctca ttaggtacaa
      121 tgaagcaaat cttccatata attgcattag tgatacgtga cattaaagct taattggctt
      181 attttaaata tcttgcacat caatttcctt cagattgtga aaattgaaaa ggtcatgagt
      241 gcagtttttc cagggtgaga gatttcaatt ttagtacaat ttgtagagat ttaattagga
      301 aacatgagtg gatgttgaat gcaaattgtg ctgttcatta gagtatagaa gctgaaacat
      361 cttgaagtat tgtggaaatt tgattgcaga ttcagtaagc accttgattg aaaagtagaa
      421 gttactgtga ttgttcttca gggt
//
LOCUS       KCLJ01001483             679 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 165837cal ultra-conserved element locus
            uce-7726, sequence.
ACCESSION   KCLJ01001483
VERSION     KCLJ01001483.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 679)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 679)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..679
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="165837cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>679
                     /note="ultra-conserved element locus uce-7726"
BASE COUNT          204 a          160 c          149 g          166 t
ORIGIN      
        1 aaaatcgctc ctgtccaata acatgctcaa agtactcctt tgccagaggc attcactcat
       61 tatataaatc aaacaagcat acaaaaacag acaaaaagtg actggtaatg cccagtgaat
      121 ttctgtgctc agctaagatg atttggtgca ttgcatgcag atgtcaggta tttttataaa
      181 gagctccatt gtgcagggcc ccaccactcc tccatcgctc ccagcactcc cttaaaaggg
      241 gggcagtggg cagacaacca ttccagctgg gcttggaacc tcgtctgagt caggaaaacc
      301 acagctcata agcaaagagg aagcataatg ttctacaagg acaaaacatt agcaaaaatg
      361 tcactcagcc ccagttccac atgttggctg ccacggcctc ttcctcctag catgcccgat
      421 tgatataaat tccatctgct cagcagccaa gtgacagaga agaaatactg gcatctggtc
      481 tctattgctg tcgggttttt gttccatgtt agaccttagc tagaaacata tgaagaaatg
      541 aaggtgctgg caagcgacta aaaggctgca ctggcacaaa tgagactttc tgatgctttt
      601 cacacttcac tttggatttt tacaggcaaa aaggtggagg agacttgata aactgagtct
      661 ggagagccaa tgggcctgg
//
LOCUS       KCLJ01001484             535 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 165948cal ultra-conserved element locus
            uce-6546, sequence.
ACCESSION   KCLJ01001484
VERSION     KCLJ01001484.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 535)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 535)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..535
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="165948cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>535
                     /note="ultra-conserved element locus uce-6546"
BASE COUNT          136 a          116 c          131 g          152 t
ORIGIN      
        1 ttttagcatg ttattttccc tttgtctctg accagccctg tgctccttgt tttcctggct
       61 caggagactt acacagaaca gcacattatg tcacaggggt gtctggggga accagctgct
      121 ctcttctgat ttttatcctg aactgcccca cagataacta attgcagctc agttgcttct
      181 attagctatt tacctaaaat tgagctggct aatgaaaatg tttctaatta atacgaggca
      241 gattaaaact cattacagca aggtcgtcag taatgagaga taatcagcac aaatgaccga
      301 gcttggagta aaatgaagat ggcaggcgat cggtgctggt tgtgcatgca ccagccagca
      361 agtgcagggt tcagcaaggt gactggtggt gctctgccct gcagttgaga aactctgctt
      421 tccactctcc agagcgggga gtgactggcc agtctagtgt aaaaatgttt aagtggcatc
      481 tcatagtggt tgttgctagg ccagccttca gtcacctata aagctgtgaa taggg
//
LOCUS       KCLJ01001485             693 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 166058cal ultra-conserved element locus
            uce-3759, sequence.
ACCESSION   KCLJ01001485
VERSION     KCLJ01001485.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 693)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 693)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..693
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="166058cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>693
                     /note="ultra-conserved element locus uce-3759"
BASE COUNT          247 a          121 c          121 g          204 t
ORIGIN      
        1 tttccagcta cacaccagaa atagtattat tttcacaata tgaaactcta aagtgcactg
       61 tttttaaata acaagtgaaa cttatttaca gaaacatgag atcaataggg ctacataata
      121 ttgaaaaagc cttcagaagt aaaaataaat aactcggaag tcacattcct caaattccct
      181 tttaattcca aagcacaaca gaaaggcatt atgaaaaaaa cagtatttcc cttctttcat
      241 taactcatct gtaactgcac tgaattcaat aacattcctc tgctattcta agcttgaaag
      301 gcatgctcgg ggtaaagtgt tatgttggta taaagcacaa tgccagactg atgtgctgga
      361 caaaagtgat caaagttgaa gtaattttag ccaaggcaca agtattctgc tgcattattc
      421 tagcagaatg acatctgttg agcaactcgt cgcagaataa accagttgtt ctaggcaggc
      481 ctggctgggt aggggaccat gtaagactga ttagagtaat gtttgattaa acaaactgct
      541 tgagttaaga tcataactgg atttggaatt catgccaaag tagtcctctt tcaaacaaca
      601 agccacaatc aattatttaa gataaaataa gcttgctttt aaatgatttg atttctttga
      661 taattagaac tgttacgaaa gcaggctgta aaa
//
LOCUS       KCLJ01001486             283 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 166267cal ultra-conserved element locus
            uce-7960, sequence.
ACCESSION   KCLJ01001486
VERSION     KCLJ01001486.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 283)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 283)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..283
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="166267cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>283
                     /note="ultra-conserved element locus uce-7960"
BASE COUNT          102 a           39 c           74 g           68 t
ORIGIN      
        1 gagtgaaggt tgcttaaaag agagaggaac tcaatcaaga ggtggtgatg caagtcctca
       61 gctgctggca gagacacagt taacattgta cacggttgaa cttcagcatg gcacttctcc
      121 aaatgagttg actgttgaaa ataaaatgtt ccagaagaac tgggagaaca ggaaagaagt
      181 taaaatagca tggtttgtat gccagtgctg aaagaagaag aaggaaggga gatagatcga
      241 cttatgataa ttatcttaaa ggtctttagt agaagtttcc aaa
//
LOCUS       KCLJ01001487             732 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 166373cal ultra-conserved element locus
            uce-3528, sequence.
ACCESSION   KCLJ01001487
VERSION     KCLJ01001487.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 732)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 732)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..732
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="166373cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>732
                     /note="ultra-conserved element locus uce-3528"
BASE COUNT          241 a          151 c          134 g          206 t
ORIGIN      
        1 agaatacaag ttaattaatc ctacaattaa tactgcaaaa tgtttggatt taacttgtgt
       61 gtctgggaac atgtactagg gctttaaagt ttgatttgta gcatcagtct caaattttac
      121 aacctgtcat aattaattca atcccctgca ctttgaaatc tccacaataa taagaacttt
      181 atcaggctgc tgtcggtatg aagtagcaca gcaaaccgaa atcccaccgg gagcagtcta
      241 gagccctctc tcctaagcag caaaatgctg ttatcatttt ctgaattaca ggaactataa
      301 aaggacactc tactcaagct gccgctgaat gtcacctgaa aagcaatcac aaaagggctc
      361 tgtcttggct tatctctgag ctctgtcact acggcaacca gcagggaata agtatctgtg
      421 ggtctatgaa tttaagaatc ccataaaagc cagggctaaa aaggcatgtg cagcctctca
      481 aagattgact gcattaatac attagcaaat actgtgaaac actggataaa tgtcagcaat
      541 tatggaaaaa gcatctaata acgatattcg ttgtctgtca aacccccgcg aggtttgata
      601 tgtaactgcc actcaaagct gtctgtaatt ttatctcaca tctgaatcca catcattcaa
      661 atttgtactt taaaagtaat aagagtgtaa aagcaggatg ttctgtgctg atggcaactg
      721 tcaacaaatg ca
//
LOCUS       KCLJ01001488             414 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 166481cal ultra-conserved element locus
            uce-7772, sequence.
ACCESSION   KCLJ01001488
VERSION     KCLJ01001488.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 414)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 414)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..414
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="166481cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>414
                     /note="ultra-conserved element locus uce-7772"
BASE COUNT          151 a           79 c           55 g          129 t
ORIGIN      
        1 aaaaaatctc tcctttaaag aatacataaa gctctcataa ctcttctatg atgtcagtgt
       61 ctctcacctg acaataccac tagtatgcat agtagaacat ctcatatttt atagtaccca
      121 ttttataaat aaattggcat ttttcatccc atttgtgttt atcatcagct tcacaaagaa
      181 accagtaaat aaaactgtca aggacagtca caacaaaatg atctcacatc aagatataaa
      241 acttgaagat actaaaagat gcttcttttt acataaaaag acagatttaa aaagtgcaag
      301 gcaagattcg cagggaaagg gaatatgtta tttttaggca catccacttc tttaaagcaa
      361 gcttcagaat gaaattccag ttcgttcttc atgataccgt tttaaagtct ctct
//
LOCUS       KCLJ01001489             606 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 166583cal ultra-conserved element locus
            uce-4345, sequence.
ACCESSION   KCLJ01001489
VERSION     KCLJ01001489.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 606)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 606)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..606
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="166583cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>606
                     /note="ultra-conserved element locus uce-4345"
BASE COUNT          205 a           88 c          121 g          192 t
ORIGIN      
        1 tctctgtttt cctagctgga aacaaatgag aaagttcagt gaaggcatta aagaaagtta
       61 agattgcaga ttaaaaatcc tattaaaatc gcctatccag tgctgtgttt cttcattcct
      121 gtcctgtaag ggttaacaat tgaggcctgt ctatagctca tttctatagt aacagcaaga
      181 ctgagacttt tttatgggca cctaataatt agaaagtgct agaaggtata acaatataat
      241 gaatcaaaac tgatagactt gtgggtttcc atagaaacat gtataattat gataatcggt
      301 ccctggcgta ccctcagaat cgtatacatt cagttaaatg caataaacat taggcactat
      361 ttagtgagct gtgatgcaga ttaacagtgt gagatacaga gaggctatga ataaaattgc
      421 tgtacagttt atctcaaact aatttcccag attgctttaa tagatgtgct atgtggatgt
      481 gaagaattga aagtgtattt ttgttagtgg taaagctaac aaagataata tttcaaaaag
      541 gctgactgtt aattttgatg cagatcaaaa tgtactatgg catgttattg catgggagat
      601 cactaa
//
LOCUS       KCLJ01001490             387 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 166695cal ultra-conserved element locus
            uce-6707, sequence.
ACCESSION   KCLJ01001490
VERSION     KCLJ01001490.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 387)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 387)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..387
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="166695cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>387
                     /note="ultra-conserved element locus uce-6707"
BASE COUNT          133 a           70 c           89 g           95 t
ORIGIN      
        1 tttgagctac taaaaggtag aaaataacca gggagaatta tgaccaaatg ccagatatta
       61 aaaagttctc cacatgtggc acagaaagaa acagccaatt cactgcaatt gtctgcttaa
      121 caagttgagc ctctctccaa ctggtagcaa tcaggcagga cactagagcg ggcaggaaat
      181 ctaaaattag gttttactac ctataatgga ggatttatgg gataatttaa ttggcagtct
      241 tgggactgaa acccatggtg ggggaacaaa aacatctttc tggatatact ccctgaaccc
      301 ttcctggagt gggctgaaca ataaaagtac tggggaaata acctgagatg caatatcaaa
      361 gtaagtgatg catgacaacg tttgtgg
//
LOCUS       KCLJ01001491             410 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 166801cal ultra-conserved element locus
            uce-7128, sequence.
ACCESSION   KCLJ01001491
VERSION     KCLJ01001491.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 410)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 410)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..410
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="166801cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>410
                     /note="ultra-conserved element locus uce-7128"
BASE COUNT          121 a           62 c           63 g          164 t
ORIGIN      
        1 cactttattt tgtccatctt tctatggtct gtgttgtttt ctattgtcat tattcaaaac
       61 atgaatagaa gtgaatatcc tctaagttat gaatgtaatc aattttgagt ctttaattgt
      121 aatttttttt ccataaaatt cttttaattt agtctaatat aatggcacat caagcagtaa
      181 tgggtacatt aaattgaatc atgatgttca tatacacatt ttatgacaca atcaaatatc
      241 ccaatgcatt aattcatgtc aatcagttaa taaaatcaaa taggaaacat tcctctagtg
      301 ctgttaactg tgcttctccc atttggaggg tgacaagatg gcctctatat cttgcctagt
      361 tggtgttttc ttggctgtgt tggagtcaat atattattta cttgatgagt
//
LOCUS       KCLJ01001492             473 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 166906cal ultra-conserved element locus
            uce-6164, sequence.
ACCESSION   KCLJ01001492
VERSION     KCLJ01001492.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 473)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 473)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..473
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="166906cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>473
                     /note="ultra-conserved element locus uce-6164"
BASE COUNT          155 a           97 c           81 g          140 t
ORIGIN      
        1 cttacttcat cagttaaaat gcttagaaac attttaagtc atcctgccag gcgttatgga
       61 taaggctgat aggaaaaata ccaggacagc tgttacaggc aaacatctga agcttccctt
      121 gtcctttccc gaagtgcaaa ctttgctgtc atctataaat caaacagttt atgatgctgc
      181 aatatttaca ctctaattaa aaaatcataa agccatttcc ctttggtgtg taaaaagaag
      241 aactcaggat ctgctattga aacatggtgt taatcagtaa ctcctaatga tctgctccac
      301 agccttagag gttacatgct tattcagcta cacatatcaa acaagataat gagggaaagt
      361 ggaagaagtg aagggaatat gttacagcaa acacagggtt ttgctaccac cagcacctat
      421 tcctaacccc tcatgtcact gtttattttc tcattttctt tataaagtaa agc
//
LOCUS       KCLJ01001493             610 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 167014cal ultra-conserved element locus
            uce-4184, sequence.
ACCESSION   KCLJ01001493
VERSION     KCLJ01001493.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 610)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 610)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..610
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="167014cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>610
                     /note="ultra-conserved element locus uce-4184"
BASE COUNT          177 a          133 c           96 g          204 t
ORIGIN      
        1 taaagaaata gcatggttaa atcaacctca actgaatggt tcttatccag acacccattg
       61 agacttttta gaaagaatca tcttcctaat ttaaaatttt agtctaaggt ttatcttcta
      121 aacaagtggt ggacatcatt tggtttttac ccacaacaga aaacccagta ccttaaattc
      181 cagttccatt cctgtgacat tctcgcctgt ttctatctgt gtcagcttct ggatatatgc
      241 atacaggttt ctggctggca cttcggtatt tccacatgtc actgcttcca gcagtgcatc
      301 atggataaag atgtattggt cctcagtttg aaccatgtaa ttcctctgtg ctctcattag
      361 agttacgtgg ccataaatat ctacagtctt ttcatgcttt attctctcta acatggcatc
      421 tatcacaatg aaacagccag tcctgccgac tccagcacta aaagaaatga acacgggaga
      481 gaaattcatt cactgtgctt acttttacat cattcaagat ttaaactttt gtaatgctga
      541 tttaaatacc acatgtttct gaacatgaac atcagctttt atttggtgcc ctgaaataag
      601 taaactcctt
//
LOCUS       KCLJ01001494             644 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 167124cal ultra-conserved element locus
            uce-1257, sequence.
ACCESSION   KCLJ01001494
VERSION     KCLJ01001494.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 644)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 644)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..644
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="167124cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>644
                     /note="ultra-conserved element locus uce-1257"
BASE COUNT          186 a          143 c          123 g          192 t
ORIGIN      
        1 tgtctctgca tttggcacat ttcccacagc ccccaggctc tgtattcccc aagccccccg
       61 agccgtttgg ctgcggagac gcctgtgtta ttgtcagatt caagagttaa atattccagg
      121 aggaatttgt tcctgcacgg tgatacataa tgcctgaaaa ccccctgcac caatattgct
      181 ctcaaattgg cagcaagtga acaagggaca tgaaggatgc ttcagcacag taacctatcc
      241 ttccttctct cctgggagcc acttggccag ctttcatcct cataattata ataaatttga
      301 catttcatag ataatattga tttctgtatt ttagcatttc accataggtg acagtctagc
      361 gtcaagaatg aaatttctat tgatctccag cgcattaatc tctcatgtgt atgtgatcat
      421 ttttataaga ccttttactg cacataaatc aatatttcat atttccagct atgccagagg
      481 agatgtcata tttgtaaact gtgagttgac acctgcaatt ccttcctgtt cagcttcaac
      541 tgttcagtaa cagtcgattc agggttggga aaggatcaag ctccagaaac aagcgagatg
      601 aaaaagaagg atgtagaata cagtaattag cttaatgaac aaag
//
LOCUS       KCLJ01001495             842 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 167234cal ultra-conserved element locus
            uce-5293, sequence.
ACCESSION   KCLJ01001495
VERSION     KCLJ01001495.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 842)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 842)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..842
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="167234cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>842
                     /note="ultra-conserved element locus uce-5293"
BASE COUNT          251 a          170 c          128 g          293 t
ORIGIN      
        1 ttttgctgtt gatttctttc ctgtgggttt gtctcactga gtttcctagc cagatcaaaa
       61 cactggttcc ttaagcactc caaactgctg agacatacct cttcatcact ctcctccact
      121 attttttctg taagtccatt gttcacaggc tttcctagca ttacaaagtt catattccta
      181 ttgtcttgct gtgaagtatt gtctgcataa tttctgtcat taatattttc tgaaagcact
      241 acaccatgtc cttgtgctaa taatttaagg gagtccactg tttccctaac aacatcactg
      301 tctaaatcta aactcagctc actttttcga ccgatatttt catttttgtc actatcatct
      361 tccagactat tagatgtatt gctgttcatt tctgattctg tcctggctct gtatgctgca
      421 tcctctgcaa ttttgccaag atttaacaat gacttggcca ccagttcatc gtaattatca
      481 tactcatcat tattgttatc gtctttttct gtgtcttgca ttattcgagt attgtgacaa
      541 ttcatttgat ggtcttctgt ataaaaaaca gaaacaaaga aagaaacaaa gaaagaaaga
      601 aaaaggaaaa gaaaagaaaa aagtggctac aattggaact gttgttgcaa tcgcacggac
      661 agaaaacaaa ctgcatgtca aatattgtta atcatacagc aattttagaa cactatggct
      721 gacccatttg aactgaaata gggctatttt tgtttatttg ctattcacat gaatttcttt
      781 cacagaactg ataagaaaaa ggcaatcaaa atctactgct gaatattacg gcataaatac
      841 tt
//
LOCUS       KCLJ01001496             386 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 167345cal ultra-conserved element locus
            uce-6826, sequence.
ACCESSION   KCLJ01001496
VERSION     KCLJ01001496.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 386)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 386)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..386
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="167345cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>386
                     /note="ultra-conserved element locus uce-6826"
BASE COUNT           79 a          104 c          106 g           97 t
ORIGIN      
        1 gcacttacct aggattttgc tgatgttgga gttgtgcatg tcggggaagg cctggaggat
       61 tttccggcgc tcgtccttgg cccagaccat gaaggcgttc atcggccgct tgatgtgggg
      121 ctcgctgctg gcacggcccc gcgagtcccg gtacacccgg gcttcagcca ccgtggcccc
      181 tcctgttggc caacaataat actgctgtag tttagctgca gagccattca ctgctttact
      241 ccctgtaacg tcagggcagg aggaaacaag atggatgcaa aacaacgtgc gttaggaaag
      301 cgctttcagt gctgtgctta ttttagcctc ttttccagat ctatccaacc agtggtctca
      361 gtgtagctga gatgacccaa catcaa
//
LOCUS       KCLJ01001497             619 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 167445cal ultra-conserved element locus
            uce-3917, sequence.
ACCESSION   KCLJ01001497
VERSION     KCLJ01001497.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 619)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 619)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..619
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="167445cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>619
                     /note="ultra-conserved element locus uce-3917"
BASE COUNT          180 a          147 c          133 g          159 t
ORIGIN      
        1 tctgtaggcc cttcaaaaat tgcacacagc cgatttaatg caaaccagaa gtcactgact
       61 gctggatgaa cattcggttt cattcccaca tggatattaa gacaaagcga gggagggggc
      121 ttcctccaca tttatttaca gttaaagggt gggtcttgag gaatgagcat gaggccagtg
      181 aagaatggat ttggtttatg ggaagacacc tcccagcctc ccattctgca gccagcctgg
      241 gctgtgtgta acctccccca tctcgcatct gccttgccca atctcgtctg ggcccgctcc
      301 aataacaaca tctgcttggc agcttttcaa acccatggat agttatctaa ctgaggcttt
      361 tgtgctgcac tgtttattct atgtgaagaa atgcctcctt agttgaaaga gtactttaga
      421 aaagctgtgc agctattagc aagtgaagca caaggctaat aacccccacc tgctcatcaa
      481 attaattatg acatctgagt cattataact cagaaggaac acatgactgc agacttgtca
      541 cacgtagaaa taaaaacact ctgcattaga ggagggaaat atatggagag tccaggagaa
      601 atctaaccct ccccaattc
//
LOCUS       KCLJ01001498             528 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 167555cal ultra-conserved element locus
            uce-1937, sequence.
ACCESSION   KCLJ01001498
VERSION     KCLJ01001498.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 528)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 528)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..528
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="167555cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>528
                     /note="ultra-conserved element locus uce-1937"
BASE COUNT          154 a          100 c          104 g          170 t
ORIGIN      
        1 gagcactgga ttaggaacaa tattcaacaa aatgctgcct gcattctctt atggctttca
       61 ttaccaaatt gaaaatctgt gtagatttct gaaaattact tttaaatgta gccaatctcc
      121 tcgactgcaa ggcttgattt gctggtgagg gagtcctgct gtgagatttt aatgaaagat
      181 catagtgccc ctccaagacc gtcaaagagc tatgggccct aaaagacctg aaataatctg
      241 ttttactttt aatggcagcc attttatatt cattaagatc aaaatgcagt tttgcaggca
      301 aattgcaaag ctgttccact cacagcttga gaacctggag gccctacagc tttttatctt
      361 gttcataagc aaatatgcag ttaatatctt ttaatatgct ttgatgcttg gtaccttatg
      421 ggtacattgt actggaggtt agagaactgc atgtttcttt ggcagtgcta gcaacgaact
      481 aaagcaccag tccttttatt tccataatgg cagaagaaat gagtcttt
//
LOCUS       KCLJ01001499             555 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 167659cal ultra-conserved element locus
            uce-7084, sequence.
ACCESSION   KCLJ01001499
VERSION     KCLJ01001499.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 555)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 555)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..555
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="167659cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>555
                     /note="ultra-conserved element locus uce-7084"
BASE COUNT          175 a          100 c          110 g          170 t
ORIGIN      
        1 aaggagaaac ctttcatacc acagagttac cttgcccctg gatttgtttg cagtgctttg
       61 cttaaggttt aattctattg attacacatt ccattttcca aagtgccatt tgcctgaagg
      121 agcaggtggt gtttgctgtt tccatttaac tgatatatta gccatgtggt gcactgcatc
      181 agtgggcagt attaatcaat ttacggcaag atgacagaga gaatcactca cagcaaaatt
      241 gcaaaaaaaa ggacaaaagc aggaaaataa tgaccattaa tggggaactt gaaaacagaa
      301 tctgggcttt taatacttct ctttcataac aaatggaatt ggaaaaattt aggagcagcc
      361 agtgtttgaa aggagacaaa tattgctatg ttcagtgcag tttttgtaag cactttgctg
      421 tttggcattg tgtgatgaat acacagtcac agacctcata cttgctgaga aacttagatt
      481 tccctccctt aactaaaagc aaaatgcatt atacagctag tacagctctt ttcttggaag
      541 atccattaag tttct
//
LOCUS       KCLJ01001500             629 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 167763cal ultra-conserved element locus
            uce-6177, sequence.
ACCESSION   KCLJ01001500
VERSION     KCLJ01001500.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 629)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 629)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..629
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="167763cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>629
                     /note="ultra-conserved element locus uce-6177"
BASE COUNT          182 a          109 c          127 g          211 t
ORIGIN      
        1 tgtttatttt cttgaaggcc ttaggatttt gtacaagttc ccaacaaaag tgaattttcc
       61 accaaataga tgtttatttt aatccagaaa agtttcttta gtccactgtt gggaacaaaa
      121 gcactccaaa gtgattatgc caccttattg cttagatatc ctcatatatt tcttgttatt
      181 ctagttgagt actacattca gacagaggtt gccaataaag tttattgtag gagctaagtg
      241 tcaatatctg tagtaccccc cgcctagggt gcttgtaatt aaaatgccac agatagtctg
      301 ggagaagcat gaaaatttga tggcaaattg atttcaggtt catcttgaaa tttgtcctca
      361 gctggactca atactgctgg cagacattgg atggcttttg tcaaaagggt ttgctgggat
      421 gagacagaga tgccttgatc tgaatattaa atacagtgct ctgcttatga cagtttgctt
      481 actgctaaca tgtttgtgtg gggaatgttt aggatggcag gactctattt tacttaggaa
      541 aatacattgc tttttggcac actaaagagc tgactttatt agcttcaaac ctaaacgtat
      601 agcctcaaaa cttctgaatt ctgcagata
//
LOCUS       KCLJ01001501             667 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 167870cal ultra-conserved element locus
            uce-6550, sequence.
ACCESSION   KCLJ01001501
VERSION     KCLJ01001501.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 667)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 667)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..667
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="167870cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>667
                     /note="ultra-conserved element locus uce-6550"
BASE COUNT          213 a          121 c          123 g          210 t
ORIGIN      
        1 ccatgaatag ttcagctgtt aacaatcccc aagaaaataa tcaggcttca tgccaagcaa
       61 cttttctcaa agtgaataat attttgaaag cctgttcaaa acatagctgt gacataataa
      121 gtttttaaag agtgcaagtg actctgaaga gatcccagtc tgagtctgaa agaagacaca
      181 gtttataacc cagttaggaa gaaagcattt tactctagcg gaattctcaa gccagtcctg
      241 cacgcacatc tgtttccagt gtgatgctgg tatgcaaact attgtctatt ggaagtgtgt
      301 tgtggtaacg tttgccaggg ttaaagactg ggtcaatttg atcaagaagc taaaattagc
      361 ttctgtgtgt tttcctgaaa agtactgtaa agctctttgt tttcctttag gtcttgttct
      421 cagatttctg ttcggctgtg taaactacca taaagcagat ggttccaaaa actacttctt
      481 tcttacttgc tcttttgcaa taatagcagc agccattagt ttctacagaa ctgaacaatc
      541 tgattctgta tttcattcat cacgagagtt taaaattcaa tgaggcactc aaaattccta
      601 cagtagtaag acagatgaaa aagttttggc tagtgaaact aaaataaaca gaataatttt
      661 aactact
//
LOCUS       KCLJ01001502             495 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 167982cal ultra-conserved element locus
            uce-3698, sequence.
ACCESSION   KCLJ01001502
VERSION     KCLJ01001502.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 495)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 495)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..495
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="167982cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>495
                     /note="ultra-conserved element locus uce-3698"
BASE COUNT           77 a          112 c          111 g          195 t
ORIGIN      
        1 ttggaatcgg tctcctgggg agggagtttc taaacagagg tagtagacat cggggcaagg
       61 taaccagtgt gtcactaggc tgtggaaggg aaatccaggc ctctgcttcc atttggtttc
      121 tggcagtttg atgtttactt ggtgtccttc atgtactttg acttttactt gtccatcgtt
      181 ggcatgtgct gcccttccct gtcaactccc ttccccagga gatctcattg taagtgccca
      241 ttcttgttct ctctctccgt gtttggatgt actgctctgt gtaactcagt gggtctccct
      301 ctttctggtt tgtttttttt tctagattcc tgccgtttgt tcatcgttgt gcctaaagca
      361 tgtcgatgtg gcgttcaagt acatcgtcca aatccttgtc tcttcagctt ctctgatgct
      421 tgaactctca cctttgacct tgtgttgacc tttgatgctg atgtgtattt ttattatgtt
      481 tgtttctttt ctttt
//
LOCUS       KCLJ01001503             478 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 168090cal ultra-conserved element locus
            uce-2417, sequence.
ACCESSION   KCLJ01001503
VERSION     KCLJ01001503.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 478)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 478)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..478
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="168090cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>478
                     /note="ultra-conserved element locus uce-2417"
BASE COUNT          141 a          107 c          108 g          122 t
ORIGIN      
        1 ctgcaggctg gcaaataata agcattaacg ccctgtgtgc ttggatggat gtattgaggg
       61 gggagatttg taaatattgc ccacaaatca ttcagagctg ctttcacagt gcactactaa
      121 aggcagacta aattagcagt ccacttcccc cgctctcctt cccactcaag tcatgtctgt
      181 ttaccctcag taatgacaaa acgtagacaa ctgtctgcta ggactgtggt gacattggca
      241 cacacatacc agacaagcag aatgttgtgg gaaacagaga ttgaagcatc ttgatatacg
      301 agaaacaatt atcatgggaa ttgttgtttc tcaatgcaac agctataata aatagttgcc
      361 atatgctaag cacagatgcc tccttgaaaa gcagccctgt gatggcacag cccatgttct
      421 ccagagtctg gggctttgat gaaatgacgg tatctcaagc cgctgaagac cttaaggg
//
LOCUS       KCLJ01001504             628 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 168197cal ultra-conserved element locus
            uce-2538, sequence.
ACCESSION   KCLJ01001504
VERSION     KCLJ01001504.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 628)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 628)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..628
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="168197cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>628
                     /note="ultra-conserved element locus uce-2538"
BASE COUNT          148 a          166 c          151 g          163 t
ORIGIN      
        1 aaccactcaa aacaaacctg aaaaaattaa agtagtaaaa attatatcca ttgctgccaa
       61 cgtacactga aactccccaa aagcaacaac aggcttacaa tttcagccat ccccttcctg
      121 cttcctttac tttcattatc atcacttgcc tgttgcagtc ccactgtcgc tctgcagcag
      181 tgctcctgtc actggttgtg cgttgtttgg gtttgctcct ggtgctgctg gggagggagg
      241 ccctgctcca cccccaagga gcatgcagga tggcggaggg ggctgcccac gtttcagtaa
      301 cactttgtgg tcctgctggc aacggaatcg cggcggcacc tcccgaggca tgtagcgggc
      361 ggcgcttggc ggttgtccgt tcggcactgc caccctcttg gcattgttgc caccattgac
      421 tggtggcgat ggagagttgc caattgggct ggcagccact ggttggctta aacttggttt
      481 cgtcacttcg ggcactgaaa aaaaaatcag aagaaacctg tgctagccag actcttcatt
      541 ttcattattt agtatctgaa atactgtgca gcttcaaaaa caattagaag caggaataag
      601 cagttttgct cccaactccg tagtctag
//
LOCUS       KCLJ01001505             525 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 168308cal ultra-conserved element locus
            uce-4334, sequence.
ACCESSION   KCLJ01001505
VERSION     KCLJ01001505.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 525)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 525)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..525
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="168308cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>525
                     /note="ultra-conserved element locus uce-4334"
BASE COUNT          149 a          112 c          105 g          159 t
ORIGIN      
        1 gtgcaaaatt gtcctttggc gcaaacccag aaatacacat ctttgcatga tgcacctgga
       61 catatgtggc aggtctggta gaatcagcta attaacaaca caggcttaaa caggcacctc
      121 atctggcagt gtagttagtt gcctgatggt gctcagcagg atttggtagt gctttttatt
      181 tttctatcct aatggtctgc tgcccaccta attttgcctt attgtcagcc actacttacc
      241 gcagcttgag gccctcccag gaggctaaat tattatcaaa ggattaggga gatgtagcct
      301 tgcagctctg acatttctga ttacttgtct atgccagaac agtaattagc tgtgactaat
      361 taagaaaaat gttcctgcca tagaaaacca tttaaaagaa ccgagaagta gaaaagcaat
      421 tgaaaagctg agcagtgctc agatttgccg atgctcttta gtttttcacc aaagtcttaa
      481 ctcatcttta attacgtctc ttactcgtga tatgaaacta ctctg
//
LOCUS       KCLJ01001506             427 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 168418cal ultra-conserved element locus
            uce-6811, sequence.
ACCESSION   KCLJ01001506
VERSION     KCLJ01001506.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 427)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 427)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..427
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="168418cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>427
                     /note="ultra-conserved element locus uce-6811"
BASE COUNT          121 a           93 c           84 g          129 t
ORIGIN      
        1 ctgttacaga aaagatctgt atttaagcca taacactgca ctgggatctc ccaggcagga
       61 tattaatgct aattcatctg ctcaccccct gctgtgagtg ttatttgttt aaatctgtag
      121 aatcccacag cgcatttata tcctcgctag agtgagctcc gctccctgta attatttaac
      181 attatatgct gatataaatt gtaacagtta aagaatggta atgagtagca acacaaactt
      241 aaccttagaa atggcagagt cagctcttaa aacaacagcc agcaactttc actgttccct
      301 gtcttttccc aagtccatat gcacaatatt gtgcatacat tatgtgtgtg cgtgtgtgtt
      361 catgctcgca ctggcagcgg tgccaggcag ggctgtaatt atgcagaatg tactgtgaaa
      421 cttatgc
//
LOCUS       KCLJ01001507             732 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 168521cal ultra-conserved element locus
            uce-1366, sequence.
ACCESSION   KCLJ01001507
VERSION     KCLJ01001507.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 732)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 732)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..732
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="168521cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>732
                     /note="ultra-conserved element locus uce-1366"
BASE COUNT          241 a          152 c          133 g          206 t
ORIGIN      
        1 aaaaatgcag cataaatttc taaaataaag atgaccatgc ctatgaatat ccattctctc
       61 cttttgctgt taaatgggga attaattccc aaaaccgcct ttctccctgt gggacctggc
      121 ccagcccagg ctcacccacc agtgagcatt ttctggaggt agctgttgct tttgctacag
      181 taattgttac aagcaaagca ccaggaattt tgagataaca tattgtttct ccataacagc
      241 ttcaaacttt tacccagatg cttggttttc ttctgcttta tagcagaaca aactccccat
      301 ttttcataag acctgatgta tattgtgctt ttgactagtc cataactcag actaaagcat
      361 acaggcactt ttctacactc tgttttctca tgaaagagag aaccttgcaa gctgcagcac
      421 cagagcgaga aagaggtaga gacaatttat gattcagtga cataggcaga aggtgtgatt
      481 tatagtttaa tttgctgtcg taatggacag aggataataa catgtaaaat attaatcaat
      541 gtgtagcaac agcagacatc atttgctaag cttgttatct gctgctctac ccctgacagt
      601 gaacaattaa actgacacca gaaaaacaag agaaaatgca tgaggcaatg ccagggcaaa
      661 aaaagcagaa gcatcccaag gccactgaaa attaacaaat aaagacaccg agctattttt
      721 ataatttatc tt
//
LOCUS       KCLJ01001508             722 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 168634cal ultra-conserved element locus
            uce-3065, sequence.
ACCESSION   KCLJ01001508
VERSION     KCLJ01001508.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 722)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 722)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..722
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="168634cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>722
                     /note="ultra-conserved element locus uce-3065"
BASE COUNT          221 a          137 c          155 g          209 t
ORIGIN      
        1 ttagattatc tgctctagat ttggaattgg gattccaatt atgaaagctt atctatggca
       61 acttaataaa aagatttagt catctacatt taatttacta catgaacttt gacttccata
      121 ctaaataaag agatggtgct tcaagagttt tcctggctca tttctttaca agtatggagt
      181 gcttgcagtt tcttctcctc tttgtgtttt gctgtccact aaatatacat tggtggaaac
      241 tgctgtcact aaaaacatct tacctattgc acccaaagta taatgctttt tgaggttgct
      301 gctcccatca atctgctcag taaaagtagc tcatcttggt aagttgtttc gacttcacca
      361 ggacctgaag aagaggcaga aaaacctgtg aaaactaaga ctgtttcttc cagtaatgga
      421 ggagaaagtt cgagtcgcag cgcagagaaa cgggcagcta atgaagaagc tgaagacttc
      481 accacaaagc ctgctcctgc caaaatgtcc aagtttggat tttccatagg cagtcagaca
      541 acaaagaagg catctgcaat atccatcaaa ctgggagcaa atgtaagttt actgtaattt
      601 tagggaaacg aaaagggaag tactttgagg aggcttcctt gcagaggaaa cctggaattc
      661 ccgtgggagt tgagtaaagc ttaattgcag ggccagctat acttcaaggt gcaggtcagt
      721 ag
//
LOCUS       KCLJ01001509             649 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 168740cal ultra-conserved element locus
            uce-5597, sequence.
ACCESSION   KCLJ01001509
VERSION     KCLJ01001509.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 649)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 649)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..649
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="168740cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>649
                     /note="ultra-conserved element locus uce-5597"
BASE COUNT          169 a           97 c          144 g          239 t
ORIGIN      
        1 tcagcacagg atgcatgtta gatcacttag gtttgggtag ttcttttaat agcctgaacc
       61 aagtgaatcc tagtggggca cattgttagt tgttggtttt gttttttttc ttgagcagtg
      121 tttttggtta ttgatttagg gaaataatta ctgaagggtt ttctacggag aatttttttt
      181 ttttttattg caagattaat gccttggttt taataaaata ttgtatgaga cgcgacctat
      241 gatgaaaatg actatttctt actgtattta tccaacatct gcattttccc ctttaaagct
      301 gcggtctcct gtttgctaaa agaatattgg ccagtattgc agattttaac tgatttggct
      361 gatcctccag ggaccagttt ctgtgggcgt gtgttggagc aggtttgtct tacactgtta
      421 aagatacact atccttttag aacggaagat cggttcagtg gccgttgtac tgtaactgtc
      481 ctagaaaaaa aaccacggtt tttcctcaag tgaagaggca tcacactggg tggggaaagg
      541 atagtgtgtc tttaaccctt caaactgttt tttaaaagga tgagctagct ctggagttag
      601 ataattgtag taaaattagt cacatttttt aggtctttaa agaagtatt
//
LOCUS       KCLJ01001510             564 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 168848cal ultra-conserved element locus
            uce-7797, sequence.
ACCESSION   KCLJ01001510
VERSION     KCLJ01001510.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 564)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 564)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..564
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="168848cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>564
                     /note="ultra-conserved element locus uce-7797"
BASE COUNT          170 a           88 c           90 g          216 t
ORIGIN      
        1 ttttttattt gtcctgtatt ggttttttac actgtggtac atatatgcga ctttgtttaa
       61 tagcttataa atgttcagta gttagctttc atacacctta ccccatatac atttttccac
      121 tttatgcttg atttttgaat tgtatcaaat ttatgtctac tgtaaacttt gcttaacctc
      181 tattaaattg aatattgcaa tctatatagt gtaacgtatg gcttctttca tcagactgat
      241 cttctatgtt accaatgtgg tttatcacct tttccctaaa gtgtacttaa tctttgcttt
      301 ctttgcacaa tgtctttggt tgcaagtcat aagcctgagg caaataaaat tccagtaatt
      361 ttgaagaatg tggtgttggt gaataaagag attgttacaa gttccacttt ttataatagc
      421 aatgagagag caggagtatc tcctgtcgag aagtccacgt gtaaaaatca aatatcataa
      481 aagtatcttc tgagatggaa gaataataaa attgggaaga ctggtacctt gaataaaagc
      541 ataattcatt acttatttac aact
//
LOCUS       KCLJ01001511             714 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 168952cal ultra-conserved element locus
            uce-888, sequence.
ACCESSION   KCLJ01001511
VERSION     KCLJ01001511.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 714)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 714)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..714
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="168952cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>714
                     /note="ultra-conserved element locus uce-888"
BASE COUNT          192 a          163 c          149 g          210 t
ORIGIN      
        1 ctgtttttca gagaacttgg ttggttttac aatctaaatc ttcccacatt tgaaggactt
       61 gggtgtaggc aaaggagtgt atgtgaggtt attctagctg caagaaagag gaaatggtat
      121 ttaaaaaacc catttaatta aatggcagca cttgggattt catttaattc acattacagg
      181 aggaatttag acttccactg ccaccacctg ctgccaggct gagctgtgag cgttgttcct
      241 gcgtctcacc gatgcaggtg aacttactgc cgaaccactt tcacagtcca gaaagcatga
      301 cattccttgt taccagtggg aggaaaggct aattgagaag tgtgtataaa agctgtaatg
      361 agtagcattt acatgtattg attagaagta gggccacagt ctctcattta tcaccaccag
      421 cagctgtgaa attttcccca cgtcgattgg cacggctcat attcccgctc ctctggttct
      481 ttattgcttt tttccccccc acccgctctg aaccagagtg ctgatccacc agctggaatg
      541 ggctggtaat tactccagct tctccaccag ctgccacaat tgccaaaccg ctggagtgaa
      601 aaattccatc ctgcatttcc gattttttac attaccactg cataatcata tttgacgaat
      661 aattaacccg ggttaatact tcagggagcc atttgcaagt aaattgataa gttg
//
LOCUS       KCLJ01001512             332 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 169062cal ultra-conserved element locus
            uce-29, sequence.
ACCESSION   KCLJ01001512
VERSION     KCLJ01001512.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 332)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 332)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..332
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="169062cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>332
                     /note="ultra-conserved element locus uce-29"
BASE COUNT           90 a           81 c           86 g           75 t
ORIGIN      
        1 ctccttatca ggctctcggc agcatttgtg attcatagca gtcatcaaag tgataataaa
       61 ctcattcaca atactaacaa acatggggct cccagttatt tacgaggcaa attcacagcg
      121 atgccgggca gtggaacagg ggagaatcaa gatggtgttg attgataaat tgacaggtta
      181 atttacaagt ggataatagg agttagaccc agagggagcg ccagcagccc cggctctagc
      241 ttggttgcag tgccatctgt cttgtgcctg ggaatctgcc tgcggccacc tccccgccgg
      301 gcaggtgacc tgcacagaca gaaatgccac ca
//
LOCUS       KCLJ01001513             405 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 169172cal ultra-conserved element locus
            uce-575, sequence.
ACCESSION   KCLJ01001513
VERSION     KCLJ01001513.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 405)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 405)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..405
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="169172cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>405
                     /note="ultra-conserved element locus uce-575"
BASE COUNT          119 a           71 c           78 g          137 t
ORIGIN      
        1 catgagccag agcgcctggg cttgaacggc atcgcagaga ccacagtggc catggaagtg
       61 acataaccgg tgtgctcctc tgttgcagct gaatgcaaac acagcactct gtggatgtta
      121 tatcgtgtat taagtcgata tatgaaaatc actaccttgt aaaatagttt atttgtatca
      181 tcaatattat ttctgttact tgaatagtag atattcatca tcatgctttt gcacttgaat
      241 ttgcaactga atggatagtt ctttaatggg atcatgagca tgacatggga tcctgcatca
      301 cttgtttaaa ctatttattt tgccatgttt acattttgta tcttgtacaa ataaatgcaa
      361 ctttgtgtct aaagattcat agctaggaaa caaaattctt gtaat
//
LOCUS       KCLJ01001514             763 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 169276cal ultra-conserved element locus
            uce-7996, sequence.
ACCESSION   KCLJ01001514
VERSION     KCLJ01001514.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 763)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 763)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..763
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="169276cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>763
                     /note="ultra-conserved element locus uce-7996"
BASE COUNT          212 a          168 c          167 g          216 t
ORIGIN      
        1 ctttacagta cagtgagcag gtgttaaacc tgctaaagtt tttattaaca ctatgtgttg
       61 gcatatttgt gaattatgtg tactttttat ttctctttct caaacctcct ttcaaattca
      121 agagggtttt ttttttttta atgctgtagt agcagaagcc catagtgttg ttgagagctt
      181 tgtccttatt tcacagatgc actgggaatt gtttttaatc tcctttctgc tttcccatta
      241 cagatggtga tgacgaccca caactctcct gggtggcttc atctccctcc agcaaagatg
      301 ttgcatcacc cactcagatg ataggagatg ggtgtgatct tggcatcggg gaggaggaag
      361 gggggactgg cctgccgtat ccctgtcagt tttgtgataa gtccttcatt cgcctgagct
      421 accttaaaag gcacgagcag atccacagtg acaaactacc tttcaaatgc acctactgta
      481 gccggctttt taagcacaag aggagtaggg atcgccacat aaagcttcac acaggggata
      541 aaaagtacca ttgccacgaa tgcgaggctg cattctcccg cagcgaccac ctcaaaatcc
      601 acctgaaaac ccacagctcc agcaaaccat tcaagtgtac tgtgtgtaaa cgtggatttt
      661 catccaccag ctcattgcag agtcacatgc aagctcataa aaagaacaag gaacatatgg
      721 caaagaatga gaaagaggtg aagaaggatg attttatgtg tga
//
LOCUS       KCLJ01001515             630 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 169387cal ultra-conserved element locus
            uce-5024, sequence.
ACCESSION   KCLJ01001515
VERSION     KCLJ01001515.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 630)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 630)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..630
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="169387cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>630
                     /note="ultra-conserved element locus uce-5024"
BASE COUNT          174 a          137 c          117 g          202 t
ORIGIN      
        1 cccaggagtc ctcttctgct ctctgattgc agtctaattc ctattgtatt cagtcttcta
       61 tagaaatact taatgtcagg aaggagatat ttactggaat acacaagtcc agaattcatc
      121 atgattcagt gtgaaatccg ctcacccttt gctccccacc ccctcttgaa ttggaatgaa
      181 atgtgcctta aactgaagtg aaatacatca catgcagcaa cagtgggccc tggcttcgcc
      241 tctattcctg gtgtgaaatc gatacactat ctttcctcct gacctgttct gtgacctcca
      301 ttgcagcttt catgctgaac agcaattgct ttgaacagtc tgggtctgcc acagctcaca
      361 aatgattctc agcttctgtc taaaactggt gctgataaca aaggcttgat tttaaataat
      421 gcagttgtag tcatcttcta attatgaatt acatgaaagt gcatggtctt ctattattca
      481 atagcatgtg cagcatgttt gcagccagag taactcctca ctgagaagac aaggagttct
      541 gttcctaaac gtatctgata aagtttatgt tgttactgaa gaggagaaat gtgtcaaata
      601 gttaaatgca cattttcttt atcattgact
//
LOCUS       KCLJ01001516             559 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 169499cal ultra-conserved element locus
            uce-171, sequence.
ACCESSION   KCLJ01001516
VERSION     KCLJ01001516.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 559)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 559)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..559
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="169499cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>559
                     /note="ultra-conserved element locus uce-171"
BASE COUNT          183 a          134 c          123 g          119 t
ORIGIN      
        1 actcagagcc tacacttttg tgtggggaaa agccattctt ccaggccatt aatattacta
       61 cggagacatc ctcataatca cagcagatct caaagtggca caaccaagac cagcaccaaa
      121 gctaaaataa ctcgcaggag caggcgagct gcttttgcag ccctcagtcc cagaaatgct
      181 cggtagcttt tcttaaaata gacagcctgt aaataaggtc tgtgaactca attgaaggtg
      241 gctgtttctg aattagtcag ccctcacaag gctctcggcc tacatgctag tacataaatt
      301 gtccacttta ccaccagaca agaaagatta gagtaataaa cacggggcat tagctcagct
      361 agagaaacac accagccgtt acgcacacgc gggattgcca agaactgtta accccactct
      421 ccagaaacgc acacaaaaaa acaagttaaa gccatgacat catgggaacg agagggagag
      481 agggaaggag ggagagaggg cacccgtgga taaagcgcaa acaattttca ggttcatttt
      541 gatttctctg tgcctaata
//
LOCUS       KCLJ01001517             687 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 169607cal ultra-conserved element locus
            uce-7586, sequence.
ACCESSION   KCLJ01001517
VERSION     KCLJ01001517.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 687)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 687)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..687
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="169607cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>687
                     /note="ultra-conserved element locus uce-7586"
BASE COUNT          231 a          128 c          169 g          159 t
ORIGIN      
        1 acagaatgaa agaaaaagca tttcaccttg taagggataa gactctatgc gagtgaggga
       61 tgacatgggt taaaattcac cttgcttctc actcctcatc cacgatggga ttttggagaa
      121 cgacggacat ctggaaatcg gttttacaca gaaaaataga aaacagggaa gaactaggaa
      181 gatgaataaa ggctcatcac agacacaaaa gaccagagga aaaagaagct tggatttggg
      241 tattcttgtc tggcaaggag gcaggcagta aggctaatga agcatttgcg atatgggacg
      301 tatgccagcg taacaaagaa gatgtgcatc agctctgcag atgtgccaaa gcccccagag
      361 caaaataatg acataatcac catcagtgtc acagaccaga ctgtacacaa ggtgacatgg
      421 gagagaataa ataagggtct ttagaggcct gtagtacaca cacgggaagg aatagccatt
      481 cctcacaact gccacaagag agtggcgaga tgttgggtat aatgtgtgca gccagcaaaa
      541 gaaatcttga attgtgcaag gctaacacac tataaattgg tgcttttctc gatctccagt
      601 tgacgtttca attcccagta ccccttgttg aatgctaaat gaaatggcac taggagtcag
      661 aagagtttgc caagttttgt tttgttt
//
LOCUS       KCLJ01001518             662 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 169716cal ultra-conserved element locus
            uce-3696, sequence.
ACCESSION   KCLJ01001518
VERSION     KCLJ01001518.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 662)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 662)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..662
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="169716cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>662
                     /note="ultra-conserved element locus uce-3696"
BASE COUNT          198 a          126 c          122 g          216 t
ORIGIN      
        1 tatattatga tgtttgatga aactccctat cagaaaattt ctggaaaacc tctgaacaat
       61 aaactttgtt gagctgatta gcttgctaaa gatctgatca ttaagagttt agattgtttc
      121 tctgttaaat cagatatgcc tcctacaatt tttacaatac ttcctttata aattaattgt
      181 tctgtggtta ttaaagaatc tcccccaaaa agcaaaatct cagtagatgc ggattttaca
      241 ctgcactaga tcaatcccaa taccagtaaa tggatattat taaacagcat ggggtagtgc
      301 aaactgggaa agaaaacttg tagtgtgctg cctttgagca gacctggctt gcatgctgtg
      361 acagggcaat tgtcgacatg ctttttcatg ccaatctgca gctttttcaa ctctagatgc
      421 tatggcaacc agggtttaac agactaagca gctaacaagc ttccctgatg gaattgtctg
      481 gttgtatgat tgccttgtct tagtgaaaat ataaaataga ccaaagacac ttgtggacat
      541 ttgtcaaact gattataatc tggacactca gctcataatt atctgttata tattgcatag
      601 tattgaccgt cagtgttttc catgctgtct gtagagagcc caagtgcctt tctgtacacc
      661 ct
//
LOCUS       KCLJ01001519             434 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 169822cal ultra-conserved element locus
            uce-6716, sequence.
ACCESSION   KCLJ01001519
VERSION     KCLJ01001519.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 434)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 434)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..434
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="169822cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>434
                     /note="ultra-conserved element locus uce-6716"
BASE COUNT          154 a           79 c           72 g          129 t
ORIGIN      
        1 aatgcatttt ccactgtcca gcagctagtt aagaagatta atgagtgctt tgtagtttca
       61 attaaactcc tttatcacca agagggacca aacaagtttt gatttcaaaa gtactgctta
      121 agaaagaaga ccagggctgc ataacactga cattttatta gaattcatct gtaacaaatg
      181 gaacttgtgt cagcaaagaa ctgattttca tacagacttc cttttgccac caatgtaacg
      241 aagtaagaaa ataaaaagca cgcctttcat tctgtaaaac atttacgcgt actactaatt
      301 agaggtaatt gtaattttac aaggtttttt taaagttttt cagtctatgc atccaaaaca
      361 agagcaaaga acaccaagct tgaaaaagcc acataatgga tggttataat gagacctgca
      421 gccttctgat atct
//
LOCUS       KCLJ01001520             779 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 169932cal ultra-conserved element locus
            uce-418, sequence.
ACCESSION   KCLJ01001520
VERSION     KCLJ01001520.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 779)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 779)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..779
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="169932cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>779
                     /note="ultra-conserved element locus uce-418"
BASE COUNT          251 a          150 c          135 g          243 t
ORIGIN      
        1 catttgtttt ctttatagta ggtcttttaa aagggagtca taactgatgg attacaacat
       61 gttcctacct tttcaatctg aatttcataa gaataaaata aaccacaaat gaaagtgctt
      121 gtaccaggca cgttgaacct ttcttcttct attagcatat cagtctgcaa tcataactag
      181 atcaatagca aagatatctg cttaaaagag caccatgctt tcttttgtca gaaattcatt
      241 actttttatt agggtcattg cttgaaaact tcaaaacacc atatggacct aattgtggtt
      301 tattttggca aaaaggaaga cactgtagaa caattgaggc attacattct acaattccat
      361 tactttcatc cctctccgtt ttattactgt gtcattaaag gcaacttgag tgagcgaaga
      421 attatagtgt catgtgtacg ggctagtaga ttaataacaa aacacactca agtttaaagg
      481 tatctaacag ctgttttcat tattttgtgt aaatacgctt gaagcatatc tatctgatta
      541 gtggatagag tgctcttctc tgtcacatgc catgggcact gctatgtgca agtaatcaaa
      601 gtgctcagaa aatgagttta cattgttcac tgctgaaata cacaaatgtc agaaagtgac
      661 tgcgcatcaa agcttaggca aatcagctgc tgcaaacaaa cagactccaa tgcacatcgc
      721 agctttaaac attcctctgc agcacaatga gtgagcagga cttattgcca gcccaaatg
//
LOCUS       KCLJ01001521             831 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 170043cal ultra-conserved element locus
            uce-188, sequence.
ACCESSION   KCLJ01001521
VERSION     KCLJ01001521.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 831)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 831)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..831
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="170043cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>831
                     /note="ultra-conserved element locus uce-188"
BASE COUNT          279 a          175 c          142 g          235 t
ORIGIN      
        1 attctgatgt cacagagatt taattaggaa agcccagaca aattcacaga agacaatggg
       61 taactgtgat tctttgccaa tcatcatatt ttaaccctca caaatcttaa tagtgatttc
      121 ttgaatgtaa aatgaatggc taggctttgt tgcaggtaac agtactaagt tatgaatgct
      181 gatggccttc ttgtacagcc ttaaattaca ttgaaaaaga tacagtttct ttaattaaaa
      241 aagctgcact gaactaatcc ctctagctga aaaaagaaaa gttttaagca atctctttct
      301 gctctgggag agaaaagcag acaataccat aacagatcag aaacataagc tatagtgtgc
      361 agccaggagc acagcaggga actgaatact gctccgactg tgtcattttt taatccccca
      421 tcccagtttt ccccgtctga cctcatgctg agatgaagtt atcacagaag acagctttac
      481 tcttaccaat gaatccaacc ctggatctgt attatcctca gcagatcaaa acaccgcttt
      541 catcaaatag cattatctgc ataaaaggca tgcaattgcc tgataatttc acccaaacta
      601 tgctattcat ttaaaggaca agaagagaaa tgtaattcat tccttttttc ccccctggaa
      661 aagctaactt atacttcact catgggaact tttcaacatg agatcccaag aagaggccca
      721 ttaaaagttt ccctctggtt tacaattaat tgttagagaa cccctgtgcc atatgagtga
      781 cacaagtgta gttatgcaga aaactggcag agaaaattca caaagcttgc t
//
LOCUS       KCLJ01001522             575 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 170144cal ultra-conserved element locus
            uce-1485, sequence.
ACCESSION   KCLJ01001522
VERSION     KCLJ01001522.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 575)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 575)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..575
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="170144cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>575
                     /note="ultra-conserved element locus uce-1485"
BASE COUNT          177 a           93 c          129 g          176 t
ORIGIN      
        1 agagtgtttt agtcatttta ctgttgttag aatggcaaat tgtggttata tatttaaggt
       61 gtttgcaaga aattattctg aaggctccaa gttccctgcc atttccaaga cagccagcaa
      121 ctagtattct acaagagctt tgcatgggta tgtctgttcc cgttgagggt gggggaggag
      181 agggaatgtc tgtgcgtatg tgtgtgaagg tatatagata cctccttcgt agtaatgttg
      241 tgaggaatcc tcataaggcc tatcgtagcc ttgttcagga tacgacggtt gctgataacc
      301 gtaatcatta tgacctacat caattcgaca agagacagga agaaacgtta atggcctctg
      361 agtgaaaacc ctaaaaatat ttcattgctc agaaaaatgt ttcaactgga tatacatgaa
      421 aaagaatttt caattgtatt agccaaagac ttattaatat gatttccttc catattgaat
      481 taacatgtga caggaaaaaa aggcttaatg cagtagttct agaaacatca cagtaaggga
      541 tggtcttaac cttccaataa tccttgttgg gggag
//
LOCUS       KCLJ01001523             655 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 170254cal ultra-conserved element locus
            uce-5136, sequence.
ACCESSION   KCLJ01001523
VERSION     KCLJ01001523.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 655)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 655)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..655
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="170254cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>655
                     /note="ultra-conserved element locus uce-5136"
BASE COUNT          180 a          150 c          167 g          158 t
ORIGIN      
        1 agagaagcag taattagttt gccattgccc tcaagccagg aaatccaaac ctcaagcatt
       61 tcccaggcca cagcacactg gagtggagag agagtgtcag ggaatggctc acacatcccg
      121 acaggagcgc acgcacggag acggcgccgg ggttgttcca gcaccactgc ggttaagatg
      181 ctgagacaat ctcgagtttt caggccatag ctgtcaggat gctttggtat attcatcacc
      241 ccccactcca tggtgataaa aatttacaca gccaacgaaa cgaagattaa tttcatgtga
      301 aaagctgaca gaatggccca tgtcattgct ttatttgtgc cagcactcag taactcggcg
      361 caagttccat tgaggtggca gacaccccgt ccccttgagc catctcatct cctctctaat
      421 gatgccaccg ttttgacaaa accaggcaac acagccggta tgtgcgaatt tggaattaat
      481 tttcttcaga aaggtcaagt atgttaatga gcttttggct gcctgtgttt tctctcttgg
      541 gcccttgtta atgggggaag aaaaggggag aaataatgaa ggaaggagga aaagaaggaa
      601 gcaagaggca ggattcagtg tagttttcat gggttctcct tttccagggc tgagg
//
LOCUS       KCLJ01001524             591 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 170362cal ultra-conserved element locus
            uce-538, sequence.
ACCESSION   KCLJ01001524
VERSION     KCLJ01001524.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 591)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 591)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..591
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="170362cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>591
                     /note="ultra-conserved element locus uce-538"
BASE COUNT          172 a          144 c           96 g          179 t
ORIGIN      
        1 tttgcagaga gcattttaaa catggatgac ccctcaaact tcttaacaca aatctctcaa
       61 gattttaaca tatggacagg atttttgcaa gcttaaagac agaaaacagt acaagttgct
      121 taaacatcaa tgggttcaaa aaagttgtta aacttacttt atttttgttt ccaaaactta
      181 tatgtttctc ctcccttgtg tgctgaactg tgcactaaag ctgtgtcttt gaaaggtagt
      241 tcccatgata tgacatccag cgcctttgac tgcctagaga taagcacctg cgtttgtgtc
      301 ccctctttac gtcacacctc cctattcaaa ccttctcaat atgattcaca tttgcacatc
      361 aacagcctca tgcgcataca cagatttttt tcggctctgg gcccaaaact ttcactttaa
      421 ttttcatcac atgattgctg tggcatatgt ccttccaaac ctcccatata tcagtcatca
      481 tgcaaatgag atggaatatc actcctctgc agcagatggc cagggatgat aacaatggct
      541 caacagagga gattcaatgt ccctgacttt atcgccacgg caacaacaac c
//
LOCUS       KCLJ01001525             729 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 170472cal ultra-conserved element locus
            uce-6574, sequence.
ACCESSION   KCLJ01001525
VERSION     KCLJ01001525.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 729)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 729)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..729
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="170472cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>729
                     /note="ultra-conserved element locus uce-6574"
BASE COUNT          236 a          140 c          149 g          204 t
ORIGIN      
        1 caatacagtg cgttaacctc agaatatcaa attgaatcag ggcttctgag gagagctggc
       61 tccaaagcag ttagaatgac actattcatt acactatcca gattcaggtt tcagacaacc
      121 ataaccagtg ctttcacaac ctctcaccta aagtcagata atgtacagcc acccaaataa
      181 gcgactgaat tgccccgcaa gtgcttctga acctctcaaa atgtggagcc tgtggaggcc
      241 ctgaaaactg agactaaaat tgttatgaag agactttatt ggatgaaatt ttcccttgcc
      301 aggcacaaat aaacagctct caatagggtg ctcaccacac agtgtgtcag cacatattat
      361 gtagtctggt gctgagtgga tgtgtcagct gcccattaga ccacactaaa atagaattgc
      421 tgggagcctg aagcatgaag catgatatta gataaagtga tgaaatttca ctcgattaaa
      481 gagccaggtc aaggacagtt acctcaggaa acctagaata ttctcacaag tttgataaat
      541 ttatcctcct tttccgctta tattcaatta tcattcaaat tatatgaatg gctgcattta
      601 cacttgctgg cttatgacat attgaggatg acagggatgg tagattttta ttatgtaaaa
      661 aaagggagga ggcagaaaat gcttcacatt agagacaata ggaaatgtta gattgattgt
      721 ttgtgtttt
//
LOCUS       KCLJ01001526             521 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 170580cal ultra-conserved element locus
            uce-4279, sequence.
ACCESSION   KCLJ01001526
VERSION     KCLJ01001526.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 521)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 521)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..521
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="170580cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>521
                     /note="ultra-conserved element locus uce-4279"
BASE COUNT          168 a          101 c           87 g          165 t
ORIGIN      
        1 tttcaaaatc attgcatcag catttgcaaa acattagtcc attttcaaat actcagatga
       61 gtttgctatt aggagcagca gaagtttaat cattacatca atatttactt aattagaaaa
      121 gggatagtag ccttgaataa atacaaaccc tgataaaaag aaagcagcat gccagatatc
      181 tctgaagaca gcgccaatac tgcaagaggt gcttgtaccg tagctctgca ctgctccctc
      241 ctgtgtgtta tctgtggtac tagagccatc tccttcccta tgtacttcca aatgtgctgc
      301 tttccttaat ttccttcatc agaagagatt aaaatgggaa ggtagttttg taagtgcaat
      361 ctgctagttc tataatgtgt tcagcagttt aagcatgcaa aaacaagcaa gatttcaaag
      421 tttgtcatat caatttaata aactatattt aatacatttc atttcatcat cagaagctta
      481 caacagtcac tgctgcagtg tttcccattt taatgggaca a
//
LOCUS       KCLJ01001527             637 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 170683cal ultra-conserved element locus
            uce-4088, sequence.
ACCESSION   KCLJ01001527
VERSION     KCLJ01001527.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 637)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 637)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..637
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="170683cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>637
                     /note="ultra-conserved element locus uce-4088"
BASE COUNT          180 a          102 c          129 g          226 t
ORIGIN      
        1 cttggctcct taatttactt atgttaaaat atattttatt ataatcattt gtagtgagag
       61 atttaccctg gaagagatgt gaaacatgca cagctatttc tgttagtgct ttatttcagg
      121 caaggctttt tgcattgctc tagccatgca gcgatctgta aagggaacct actctgatac
      181 agtttgaaaa gtgcattttg tacttggctc tccctttgat cgaattaatc tggtcttttt
      241 tgtagttcta aatgaggcct atgggctgac aatgtagctg tttaaagggg attttagggg
      301 ataatagcca atgcaaatag tgccatgaga atggcaactt gcttttgcac tttcaatcac
      361 ataataacag caaagaaagc ttttaaaatg aattgaaatt ttgtggcttg ccatctggga
      421 ttatttgggg aaacagttct gaatactatg gctgtgtaaa agaatggtac tatgggacac
      481 tcttaagctg acatgtttca gatggcaccc ttatgctaac tgctgcaaag ttggctagca
      541 ttattatttt ctttcttctg gattatctgc aaaaaattct ctttgctggt atttggggct
      601 gaaaaacttt tctattgtta aagaattcaa ttcaaac
//
LOCUS       KCLJ01001528             682 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 170793cal ultra-conserved element locus
            uce-7902, sequence.
ACCESSION   KCLJ01001528
VERSION     KCLJ01001528.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 682)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 682)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..682
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="170793cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>682
                     /note="ultra-conserved element locus uce-7902"
BASE COUNT          214 a          126 c          124 g          218 t
ORIGIN      
        1 cacatcacaa agtgaattgg gtcatctcag ggaaatataa aagcattatt cttctgagat
       61 ttgaaaaaaa tacataatta cttcttccac caagcatgat tcttttaaat aaccttcatt
      121 tctgtccctt ggaaatgaaa agaggtttac attaaaaagg catttcctct gactctctgt
      181 ccttgagcag cacaaaatgt aaactatacc tttcccttct tcctttgaag aaaaaggagt
      241 ttcaatcttc tcctgtgagc agggtccatt taaataagga gatggagtcc catcttttcg
      301 atcagctttc tttgtttgac ttgtcagtaa taacacttta gctgaaattg tacaggcgtc
      361 ctgctaattt agtaattatt gacacggtgc tgggcaagaa atgatagcaa acacagggaa
      421 ctgttaagaa gaaatgaaat aaaagatctt catatcattg tgaataatgg ttgagatcat
      481 tttgtgctct aagtaggccc aagacacctt tttccatttt ctcgacacat ttataattta
      541 tgctttgtaa tagttccaaa tatttttagg actccgcact ttgtttgaga atccagaaga
      601 actgaatgag aatcacggag tgcacacaca gatgagtgag gggtgtgacc tgccatagct
      661 tttgatttaa gaatgatccc tc
//
LOCUS       KCLJ01001529             534 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 170904cal ultra-conserved element locus
            uce-3369, sequence.
ACCESSION   KCLJ01001529
VERSION     KCLJ01001529.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 534)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 534)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..534
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="170904cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>534
                     /note="ultra-conserved element locus uce-3369"
BASE COUNT          153 a          112 c          103 g          166 t
ORIGIN      
        1 cccttctgtt taagaaccaa tgggcaccaa cctcgcagtg aaatattgca ctttcagtag
       61 tatttggatt cttctgtttc agcacaagtt tctaagaaaa ggaagagaga caaaaagata
      121 gcaaaagaag gtgatctatc aagctctaga gaatacaagt gctgctgccc tgggcagttt
      181 cactacagca ctggagaaaa caaagactac tatagcagcg tcgggacgtg ctcttttgaa
      241 gctgttgagt aggcacaaac ttcttgtttc agatcaagcc ttgtatcttc ttcagttaag
      301 ttgcctcttc tttggtcttg agttttcctg atctgaactt gaagcagcag tttcaggtgg
      361 taaattctgt tctgttccac ttcatactgt atgactgtga aggaaattct catcaaatca
      421 gtttgcatgg gaccttccat ctacttccaa cattagttct acaataacag ggtcattttc
      481 tctattaata caggaggttt aatccacatt aataaaagtt cgcattccca cttc
//
LOCUS       KCLJ01001530             633 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 171009cal ultra-conserved element locus
            uce-905, sequence.
ACCESSION   KCLJ01001530
VERSION     KCLJ01001530.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 633)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 633)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..633
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="171009cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>633
                     /note="ultra-conserved element locus uce-905"
BASE COUNT          213 a          105 c          139 g          176 t
ORIGIN      
        1 tttaaggaat agcactattt ataaaataaa tataaaatca ggcctccatt ttgcgcaagc
       61 aacaaattat gagagctcca gcagctgtat atttgttgaa cacccgcctc ctgtgagtat
      121 aaattgcacc ttactgagca gaaataaaat acagtccacc agagactgct gcaaggtgta
      181 gctgcttgtg tatgggcaag taatgacttg cattttcagc tgctccttag taagagcctt
      241 agtaattgga atcagttatt caaaacatct ctaaatgtga tttaaatggc aaggatttaa
      301 taacatagaa agaagtcatt acagaggttc aagcagggga gaagggaatt ccgtttttca
      361 gagcagaggg agaaaaataa agcaattact tgatgtaaag gccagaaaca ggactcctgc
      421 tgtcacagag aaatcaaatc tgtcagcaat tagtgggatc ttaggaggca aagaaccctt
      481 cagtgttgaa cagtgaataa ggggttagca attatatgaa ctgataaaag tgttctggtt
      541 ttcaaacagc aggttaacaa ggcttacttt tttcataact tcgtgcagat gtgatgagtc
      601 acactttgtg acatttttca ggaggactgt atg
//
LOCUS       KCLJ01001531             369 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 171120cal ultra-conserved element locus
            uce-94, sequence.
ACCESSION   KCLJ01001531
VERSION     KCLJ01001531.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 369)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 369)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..369
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="171120cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>369
                     /note="ultra-conserved element locus uce-94"
BASE COUNT          120 a           60 c           74 g          115 t
ORIGIN      
        1 ttaccttaaa attatttaca gttgtaacca aggggaggta tttccatggg ctgtcagccc
       61 ctgaaagact gggataatat tccctgctcc ctgacaagac aaattacccg taatgagtgc
      121 agtagctgaa gggtatactt ttattttaaa atatgtcaat aacccagtga ctaaacgaat
      181 attgattcag cataatgaag cctgagtaat gtgaaaatga gctcttcaag gagcatggta
      241 aagactttct ttttagcttg tagcaagaag cttttcattc tttactgtta ggtagttgaa
      301 atgtgcagtc ttaaacaagt catccttgaa cattggtaat atgtggagta atgtaacaaa
      361 agaacttta
//
LOCUS       KCLJ01001532             674 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 171223cal ultra-conserved element locus
            uce-754, sequence.
ACCESSION   KCLJ01001532
VERSION     KCLJ01001532.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 674)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 674)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..674
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="171223cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>674
                     /note="ultra-conserved element locus uce-754"
BASE COUNT          236 a          137 c          116 g          185 t
ORIGIN      
        1 aaatagcttt gaaatgaagt ttcctaaagt cattaaagac taaagtaccc agagcttctt
       61 ttgtcggagt cctgaatcaa aaagaaaaac aaaacaaaaa ccccaacaac aactccctcc
      121 ccacaaagtt cagagtagaa aaattaaccc tgggaaaatc tggaaagcct gagattatac
      181 cagacattca tcctcaagct gatttttttg tacaatcctg tgttgtgctc aaaacaaaaa
      241 tctgagaata ctccttaaag cggaaaacaa agctctgctc cagccataca tctgtgagtt
      301 ttgaaacaaa ggtttgtttg tgtgcctcaa tcactcttgc ctatgaaagc agacacttac
      361 ttgaaaaact tttcagggaa acactctaaa ccaacatcct ggtataaatt tgcaaaatgc
      421 aatacaggcc tgattgtctt tggagaggat gcaggccgca tacgaatagc tctttctgaa
      481 acgtaatgtt ctttgcatgg ctcagtggct aatgtacaat aaatcaacaa aagagcgctt
      541 caagaaagct attgggcagc agcaaggcca ctgttatttt atctttttac agtatttaat
      601 tggaagtttt tcctgaaact ttacccaacc ttcaaattac tagactctgt ataagaagag
      661 attgataaga tgaa
//
LOCUS       KCLJ01001533             554 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 171334cal ultra-conserved element locus
            uce-7548, sequence.
ACCESSION   KCLJ01001533
VERSION     KCLJ01001533.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 554)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 554)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..554
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="171334cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>554
                     /note="ultra-conserved element locus uce-7548"
BASE COUNT          175 a          111 c           97 g          171 t
ORIGIN      
        1 tcaaagaatc cagctctgag tttgtggcac agatttgaga ctaacttgct gtttgatttc
       61 tctttacatg actagaccca ccaagtgtgc atgtgtgtcc aggtgccccc tcttgtaccc
      121 atttctattg cattttgcat ttctgtcaat atagtctcca atatctgaat ccactgatag
      181 aacagatgca gtaattgcaa acagctgtaa agtattactc atcttgctaa tcaaaatgac
      241 tttctgctaa ataaaccatg aaaaaagctt ttccaccatc agtgaagtgg agtggaaatg
      301 atacaggctg taaagagtcc accatgtaag taaaatcaac agatcaagtg ttcctacaac
      361 aatgagtcta tgggttaatg cacatttcca aaattgttat agaaatttct ctatgtttag
      421 gaaaatgaat ttgtgtacac aaatgttcct ccaggtattt tacatgacac caccagatac
      481 acagagccga agaactgctt tatgctttct caagattcat aatccaaggg gagataattg
      541 acccatatgg tttt
//
LOCUS       KCLJ01001534             445 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 171442cal ultra-conserved element locus
            uce-2073, sequence.
ACCESSION   KCLJ01001534
VERSION     KCLJ01001534.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 445)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 445)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..445
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="171442cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>445
                     /note="ultra-conserved element locus uce-2073"
BASE COUNT          161 a           78 c           69 g          137 t
ORIGIN      
        1 aataattcaa tgcaattttg tcaatataga aatgttttta gatcatctaa aagttttctc
       61 cttcttaaaa atatcaaaat agacaccaaa ccaaaagggg tatgtactat tttgcctttt
      121 ttttaagtag aaagattgac tagatattaa cacaaatggg tttaaatgtg aagctgccat
      181 aaaagcaggc acataaatgt aattctccca gccgctattt tgatgcacat ttttgattcc
      241 atgaatattt tatgaaatgg cccaaactaa agccatataa cattcctgca ttactgatgc
      301 ttgcgcccgt aagctacaaa cattagaggc atgattgagt gcattaaaat gaactcattc
      361 agcagtgcat tgattacttg aaggaagtta ctcccactta agaaaacagc acacaaacct
      421 gaagttttca atactgaaat tagag
//
LOCUS       KCLJ01001535             684 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 171548cal ultra-conserved element locus
            uce-4874, sequence.
ACCESSION   KCLJ01001535
VERSION     KCLJ01001535.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 684)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 684)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..684
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="171548cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>684
                     /note="ultra-conserved element locus uce-4874"
BASE COUNT          225 a          109 c          129 g          221 t
ORIGIN      
        1 ttagcttgaa agctttgtaa cccagacaat atatttctgg aataagtttc atttaagaca
       61 gcagaacaac agtgaagtta gaaacatgtt tgtgtctttt tttcatgact agcccatgtc
      121 tattctctat gaaattgatg tcaaaaaagt attatatatt ttcagtggga aatagaaggc
      181 tgccctctac tatccttgtc aggacgtcgt atccctttaa tcatactttt catttcagta
      241 cattgaaatt tccgttacca aggacaacat cataaataaa agtgtttgtg aaatttttac
      301 ctgcagcttc ctaactttgt gcattaagca tgagactagc agagaggtgg tcaaatgtga
      361 aaatttataa tcatttatta cgtacggctg aagcgagaaa ggaataaaag cgtgaaggca
      421 tacatctata aactggagca gaaaagctta aatgaaaagt aaagtgaatt tctgtgtctt
      481 gtcataaagt aatgagaagc tagagcttta ttcatagcaa cccaagatgc atttactctc
      541 aatctagctt tagcagtaaa tgcttccctg atgtattgct tcggacttac aaagaaatat
      601 ttgtgctcta cataatagta tagttaggag aattactgca tggctgagga gattctataa
      661 aggtttatag ctggtgctgt tact
//
LOCUS       KCLJ01001536             557 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 171656cal ultra-conserved element locus
            uce-1173, sequence.
ACCESSION   KCLJ01001536
VERSION     KCLJ01001536.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 557)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 557)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..557
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="171656cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>557
                     /note="ultra-conserved element locus uce-1173"
BASE COUNT          176 a           87 c          107 g          187 t
ORIGIN      
        1 tttgccaact atagtgctgt gatttatgta taacttgtag accttagcag caaatgctca
       61 tcattttaat ggtttcagca agacaactgg cttgcatcag tcttgtagtg caagactcat
      121 aagactgtgc atataatagt gatactgtca tgtgttaaat gagcatagct tgaagtatta
      181 taaaaattga aaggttgtgg cagtaataaa aaggttgaat ggtaatgtct ctaattgaac
      241 agtaaggcct ctttcctatt aagtcactct ttcatctgtc tttttaatta ttgcattatc
      301 attttgtact gcagttcaca atgaaacgac catttgtgtt taagtgaaag ctaattatta
      361 ggactgaatt attgtgcagt ttattgatcc ctatggtgga ttaagggctt taagttcgtc
      421 tagacagaat agttagcaaa atgacaaaag gaaacatata agacccttgg gaagaatccc
      481 cacgctccat aagcaattaa tgcctgccag gtaatggaat ttaagtttat actaaatcta
      541 gcagtgcttt gacattt
//
LOCUS       KCLJ01001537             390 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 171762cal ultra-conserved element locus
            uce-5582, sequence.
ACCESSION   KCLJ01001537
VERSION     KCLJ01001537.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 390)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 390)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..390
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="171762cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>390
                     /note="ultra-conserved element locus uce-5582"
BASE COUNT          118 a           76 c           71 g          125 t
ORIGIN      
        1 tttcttccag aacccgatcc agcagaagaa tttactgagc caactgaagt tgaatcaact
       61 gaggtattat tcactgaaac actgtcattt tgtatacctt caatgccact tacttttact
      121 ttcataccct ttcttatttt tattttagta tgtaaacaga caattcatgg cagagactca
      181 gttcagcagt agtgagaagg aacaggtaga tgagtggaca gttgaaacgg ttgaggtaag
      241 atcttgtgta ctgcaggtaa aattgcaatc cctgtttctg ctggctcaca attcatgata
      301 ggttttagta ttgcatccct tctccccctt taagtaggct tggacttaat tacatactta
      361 gctcaggagt acctaaaata aaaataaaac
//
LOCUS       KCLJ01001538             694 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 171869cal ultra-conserved element locus
            uce-6688, sequence.
ACCESSION   KCLJ01001538
VERSION     KCLJ01001538.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 694)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 694)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..694
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="171869cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>694
                     /note="ultra-conserved element locus uce-6688"
BASE COUNT          235 a          114 c          116 g          229 t
ORIGIN      
        1 tgaagagtca tgtaaacata atgcactggg atctgacctg gttttgatta gctttgtggt
       61 attttgcagg gcagtgcttt ggcctgtcat ggtaatcaag gactattatt acctggagtc
      121 agcaataatg agaacagaac ctctaatttc aaattataag ataacacatt gattaataac
      181 catgggatga ttagtcaatc caagacctta atgcacaatg gagaaattta ttcattatct
      241 gttcaatgta attcttcttt cctcttggtg actttaaaaa caaccaagga aaattactgt
      301 ccctcagtaa aggcttttga atttcatatg catttaatta gataactgcc agcccaagga
      361 caggaaccat gacaaatagt tgttctttta aaattagaag aatagactgt tcaatgaaca
      421 atattgatgt tctcttgtac tgagttatac atctgctact acttccttta atttatctaa
      481 ccatttttaa gatttaatga ttttttaaca aggttttagt tacatatgct agttggtcat
      541 ttaaaaaatg ttgctaacac caacagtacc tgcatagaaa aaatacatac cccaccacaa
      601 tcttcttgga tttaggaatg aaagtacaat ttacttagaa aaagggcatt tgggattaag
      661 aggccatctt tatgttagta gaaaaacaac agtc
//
LOCUS       KCLJ01001539             717 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 171978cal ultra-conserved element locus
            uce-5532, sequence.
ACCESSION   KCLJ01001539
VERSION     KCLJ01001539.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 717)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 717)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..717
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="171978cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>717
                     /note="ultra-conserved element locus uce-5532"
BASE COUNT          204 a          158 c          132 g          223 t
ORIGIN      
        1 acaaaggata atctatattt tctggattcc aatctactaa gatcataatg ttataaaggt
       61 tttgcaacta ttgcctaaga tacaatttta aattctaaac tgctcacatt tttacttcgg
      121 aattcacctc attcattgaa atgttacctc agcatctatt acggctttgc cttgagcaag
      181 gaattttgtt ttattttgtt tttacatttt gtctgcttct aaaatgaagc tatttaatcc
      241 cttgtcatca catggtcata aaaattgcag gcagacagaa gttagcagtg gctgcttcac
      301 aggccccaca gcaatgcatg gtaacagatt ttcaaagcag ttcaaagagt ccagtttcca
      361 tctgtgtttg gtgaagggtg caaaaacctt ggggccatct gaaaactctg cttcatctct
      421 aacacttgga ataacaaagg tgttattttt caaagccaca gtctcccctc ctggggtggc
      481 tctggagata cagttcaggg aaggtgggaa acttcagagt agatattctc cttctagact
      541 ttgcctcctt cagggagttc ttttgaggat ggcacaatgg tggcctatat aacatgggtt
      601 actgccagca gaggccaaca gttaatgaac cctatagaca aattcttttc tctgatttca
      661 gtacaaaaat ctacaggaaa acagcctcgc cccctacaca cccttctcct caagccc
//
LOCUS       KCLJ01001540             743 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 172087cal ultra-conserved element locus
            uce-6382, sequence.
ACCESSION   KCLJ01001540
VERSION     KCLJ01001540.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 743)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 743)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..743
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="172087cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>743
                     /note="ultra-conserved element locus uce-6382"
BASE COUNT          248 a          161 c          116 g          218 t
ORIGIN      
        1 tgtaccattg cacacaagtt ttgtgagcag acatgaacat ggaagttcac acaataatta
       61 aataaacaga aagcagagta gctaggaaga ttacaaacac cacatcttat tacttaatca
      121 ccctgcaaac acatttcaga ttattctttt ttattagttt catgttaaaa tgcaaatcgc
      181 atactgtagt tttaatgaca caataaaata gtatttggca ttaagatctg ctgaatagat
      241 ttctccaaac tggcttgtcc gacacatcct ctgctcagtt ttagttcctt ctctccatag
      301 cagctctttt ggtaggacgc caaagcctgt caattaacag taagcctatc ccttatgaac
      361 agaagcaggg actgtgatca tgttcaacta agatcaagga ttagtaaatc agcgtggcac
      421 cagattgcag gcactattta aaccccacaa gcctacaagc cacagcagca atattatatt
      481 ccatctggat gtggagaaca aaatctcata gttacagagg aactcacttt ttacctttcc
      541 tgtgcaggca attacaagtc aacttaaaat gagccctgat ttaatcatgt tggttctctc
      601 aaatgccagt taggaaataa ccccatgctg ccactgctgg tatcttatca aggactttcc
      661 atcaaattac acatatttca ttacacctac tataaattat agaaggctga tttttttaca
      721 agcaaaccaa atattgcacc aaa
//
LOCUS       KCLJ01001541             667 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 172197cal ultra-conserved element locus
            uce-737, sequence.
ACCESSION   KCLJ01001541
VERSION     KCLJ01001541.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 667)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 667)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..667
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="172197cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>667
                     /note="ultra-conserved element locus uce-737"
BASE COUNT          250 a          121 c           97 g          199 t
ORIGIN      
        1 tcctggtcca tctcccagag ccatcctaaa aatgcaaggc acacctgcat atcatcattc
       61 agaacagccc agagtgaaac caggctctta aacaatagca agggggtttc tatgccatac
      121 aaaaatatat taaaaataca taatgtaact tgtcttaata tacttttctg agtctaaaaa
      181 tatgccagac caaaagaaac atatttacat aaaaagcaga caaggtcaaa taacaaagaa
      241 agcccttaat tagttgtaat caactttaat ttgcataccg tatataattc ctaaatgatt
      301 gttaataata actttatata atggacttcc aattttcatg aaaatggcac attttgataa
      361 gcagacacaa aaccctagta ctaataaggt ttaatttgca tacattagac tgattatcca
      421 aacaaaagga ttacagtatt acttctccat acctttatgt ccttattatg cacatttatt
      481 aacttcacaa aagctagctg ttagtgacaa acaatagccg tggctggaag agaaatctac
      541 agtatgaata aagtgcattt taatgctaag gagcaaagtt tatactgcat aaatgttttg
      601 tttaactctt tcttttgaaa aaggcattat tgcttagtat ggcaggcacc atcagacgga
      661 taaatca
//
LOCUS       KCLJ01001542             503 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 172308cal ultra-conserved element locus
            uce-1318, sequence.
ACCESSION   KCLJ01001542
VERSION     KCLJ01001542.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 503)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 503)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..503
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="172308cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>503
                     /note="ultra-conserved element locus uce-1318"
BASE COUNT          179 a           81 c           71 g          172 t
ORIGIN      
        1 ttatcacaac tacacagggg tacaatatgt ctcagtgtct tcaagcatat ttaatatctt
       61 taaattttta aatgaaaatg tagctgtcaa ttttaaacta atttggatgg acagcaataa
      121 aatgcaaacc tcacttcaaa ttagaatttt cagtgaggat ttctaatgga aagtaattgc
      181 tgacaatagg aaatgacaaa ttactaatta cttagttcaa ttagactttt gtgcctttgg
      241 tcctaagtgg caagcataca gcaaatcttg cacttttata acaattaatg acactaaaac
      301 tatttaaact gccaacagat gtgagtaaga agacatgaat tgaaacttac ttaatttaca
      361 tactatccca attttatacc aagtaaatgg tgtttaattt ttatgttaca actaaatatc
      421 actggcctag tgtgatttct gcagaacttc tcagaataaa atagttttct agtgctaatg
      481 ctcttatcac agcactattt atc
//
LOCUS       KCLJ01001543             727 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 172414cal ultra-conserved element locus
            uce-7546, sequence.
ACCESSION   KCLJ01001543
VERSION     KCLJ01001543.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 727)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 727)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..727
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="172414cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>727
                     /note="ultra-conserved element locus uce-7546"
BASE COUNT          206 a          156 c          129 g          236 t
ORIGIN      
        1 atttgcaaat atccaaatct tctattgtct ggagggttta ttttgcgaca cagaacctat
       61 agttactgca cccctttttt atgattagct gaagcacaga caaatcatga aaagacaatt
      121 gtacactttc ttgtgtggct ttatgggctt taagtgccta caaaaaagga ttccttatgc
      181 tttaatttct ctttattttt ttgactgtaa agacccatgg ggtaaatgcc agtcccacaa
      241 tcctgcagtt atatggttac tgtcagcctg ctcaaatgat gcttcctgtt cattaggcat
      301 cctttcatct gacaacaatg tactggcttt gctgcaattc ttagtcaacg cccatctctt
      361 caatagcctg tgaatagtat taaatagtgt ttatgctagc tattgttgcc ttttgtgtgg
      421 tttgtctaat tcacagagaa aagtctgctt ttgtggtcta aggctggcta cgtcatggca
      481 cgccatgtgc cttctgatgg gatccattcc tgctgagtga taacattaca ggtctcaact
      541 cctttgcaat acaatccagc attcttaaca cagtcaatac actcacaggc aatctagttt
      601 actctttata ttaagaggtt tagggagaca aagctcatct aaatacctgc tcgtgaaaca
      661 agtaagatga attcaaccga tttgagaagc tcccacacaa ctacacaatg agcaccataa
      721 atcaaaa
//
LOCUS       KCLJ01001544             546 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 172525cal ultra-conserved element locus
            uce-3613, sequence.
ACCESSION   KCLJ01001544
VERSION     KCLJ01001544.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 546)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 546)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..546
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="172525cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>546
                     /note="ultra-conserved element locus uce-3613"
BASE COUNT          160 a          109 c           97 g          180 t
ORIGIN      
        1 cattttgctt tgccatgcag caaggtgctc actgcattga taaattttaa gtaatgagga
       61 atacaccaaa atgtgcagtg ctgtccctct catatacaca aaatactcag aacattaaag
      121 aaagctgtta agctaatctg gtgcatctaa atgggcaata tatattgaat ccatgctcca
      181 ttgatcataa ttattgcagt gccctttatc aagtaaccat cttaaaccat tatttagaga
      241 tcattttgct ttccattact gtcactatat tgcagaattt gctaggaatt ggaggctgtg
      301 tgatagaggg gtgtgcagtt gtattagtct ggaatctgct cctgttatcc aacaatgttt
      361 ctaaaatgag agacttagtg ccatgttcac acaacttttg ggcagccttt aacttcattc
      421 tggagtgaca agtcactcac ataagctttg tttgccacat aactccttcc cgatttcttt
      481 gcatatttcc cttaaaatta aagtacagcc cttatgatgt aacaagagtt gctaaatggc
      541 tgcact
//
LOCUS       KCLJ01001545             496 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 172630cal ultra-conserved element locus
            uce-2507, sequence.
ACCESSION   KCLJ01001545
VERSION     KCLJ01001545.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 496)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 496)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..496
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="172630cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>496
                     /note="ultra-conserved element locus uce-2507"
BASE COUNT          167 a           75 c           91 g          163 t
ORIGIN      
        1 gttgctacca tgtcttatga ttgtttatgg gattgtttaa gacagcaaga atcttgggtc
       61 ttctcttttt tatgaaggtc aaactaaatt cagaattata actgaaaaat gaaatgtaaa
      121 taccaagatc tttgataaca aagtaattaa aatgtatggt tttgcctact gtgtataata
      181 agggcttata tttgatcaac cataaaagtt atttaatcat tttaaccttg gaatactacc
      241 ccacaaaaaa ctacttaatg gaagttagct gagaagcatt agagtatcac aacatcaaga
      301 aggctgagcg agagggcact gaaaattcaa gcacagctta tttctgccat aatactgtag
      361 caggttgcat ggcaaccagt ggctgtggat tttgaagtta ctttatcctt attcaatgag
      421 caaagactta gcctgtattt attttggtaa tttctagaat taatcaggta tttaaggccc
      481 agtgtagcat aaactt
//
LOCUS       KCLJ01001546             435 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 172735cal ultra-conserved element locus
            uce-6267, sequence.
ACCESSION   KCLJ01001546
VERSION     KCLJ01001546.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 435)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 435)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..435
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="172735cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>435
                     /note="ultra-conserved element locus uce-6267"
BASE COUNT          152 a           76 c           58 g          149 t
ORIGIN      
        1 aagattttgg acaaaagatc atgaggtaga agtagagttt attttccata aaaataacca
       61 ttaccacatt attggaaatt tgaaataaat tattttgaaa catatttcag aagtttttaa
      121 agcttggaac aactatctat catcaaagta cacatagaca ctctgagaat acaatattca
      181 ttttgctgca gaagaacaga cattgcataa caatgagatt tgctaatgaa atcagccatc
      241 aacctggaat acatttgtac taaaccaaga cctcagtgtc attttctttt tgcatcattt
      301 gtcctctcat ttttcgacct ttcgagtatt ctattggttt cagtgcttcc aatactgcaa
      361 aatatttatt ttacaaaatc ctctgcttac tacaaaatgt agattctaat tgcatagctt
      421 ctatcagcat taaga
//
LOCUS       KCLJ01001547             659 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 172843cal ultra-conserved element locus
            uce-7658, sequence.
ACCESSION   KCLJ01001547
VERSION     KCLJ01001547.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 659)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 659)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..659
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="172843cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>659
                     /note="ultra-conserved element locus uce-7658"
BASE COUNT          188 a          139 c          132 g          200 t
ORIGIN      
        1 atgttcactc tggagcaatg aggccttgta cttaggctgt tctggctggc cacaagtgat
       61 acctgaacac cactgtttca tttataatac catgtgctgt gatggttgtt atcacaccat
      121 gtgtacagga ctcaataaaa acacatgcag aacatgcttc actccacctt gctcctgatt
      181 tgagctgtca atgtagggag aaagaaactc tgctcttctt ccacatcagc cttcgtctgc
      241 ttcctccatc atggaaattg tccagagtcc cagagaaatt ttcacaggca tttgttgtat
      301 gcaaatagct gccaaataaa tcattgtata ttgggggttt gtacctatgg aacttgctac
      361 tgtcactcca cttccccata taccttaatc atgttattca ttcaacaaga aggatgaatg
      421 ttacagcatg agactttaat ccctcagtgc tgaggacctg attctctagt gagcaggaaa
      481 tccagaggac ttaaggtgag agtcaattat ttctcagcac tgggtttagg taaggttata
      541 ttataaaact tcctaaaata ctttggagaa atgcgttgtg tgagcataca ttgattgtgc
      601 atgtgtgcac ttcacatctg taaatacaga gcctaaactt aaggcagaga atttgcaac
//
LOCUS       KCLJ01001548             707 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 172950cal ultra-conserved element locus
            uce-7358, sequence.
ACCESSION   KCLJ01001548
VERSION     KCLJ01001548.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 707)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 707)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..707
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="172950cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>707
                     /note="ultra-conserved element locus uce-7358"
BASE COUNT          184 a          161 c          171 g          191 t
ORIGIN      
        1 gagggtgcca ggattgccct gaacagaatg ctttcctgtt ctctcagcac aaacaactct
       61 tctttgcaat ttcccttgga gcccagcaaa gagcaggagg tgatggctcc atagaaaacc
      121 aactcccaga gtagggatct ccttgaggga ttaagtcccc aaaagggtta acgcaacctc
      181 ccttttcccc caatagcttc atggtcctaa caactttcat tgtgaagtgg gtgcaggtgt
      241 gggctatgct ttgttgatca caatcccttt tgcagaggaa gctttgaata tgtttgacat
      301 aatcagctca cagcctttgc ccgcactctt tcataaacag gccattttca catccttttc
      361 atgggatccg acaagcggaa aaataattaa tgttacctca gcctaacagt gacccagctt
      421 tgattcaaaa ggacggcatg ttgcataaac taaccattta attgagtgat agaaaaagcc
      481 cacatgtatc aattctgcct ccacctatta tgattactgg ggctttgcga ggattgtgct
      541 cctcggtcat aaagcagagc ttaaattcaa gcccatgaag tggtttcagg aggactgatt
      601 gggcatgagc tggggattat ctgtgtttgt ggtggcagga gatgggagca ggggaagatg
      661 tgggtgccca gccaccatgg cgcatgttca ggttgtgccc aggttat
//
LOCUS       KCLJ01001549             439 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 173061cal ultra-conserved element locus
            uce-5623, sequence.
ACCESSION   KCLJ01001549
VERSION     KCLJ01001549.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 439)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 439)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..439
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="173061cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>439
                     /note="ultra-conserved element locus uce-5623"
BASE COUNT          151 a           61 c           79 g          148 t
ORIGIN      
        1 acaatttatg gcaaacaaat gagggatttc acatgctgct cagatttgtg tttacaccaa
       61 gaaagaacac ggcccataaa taagattgtt tgggaaacat ttactgctgt catactgata
      121 atgcatttta aatcctgggg ttatcaaaaa aatggatttt ttttctctat attgtttgac
      181 agctgaaatt aaacaaattc tattgaagta caaagctaat agaaggttta ctatgtgtgt
      241 cattagcacc atccatataa ggaaacagaa aatatgaggt gtggattttt aaaatatgat
      301 aaaatgagag cactattaga tgcatatgaa ggtgtgactt caggccaggc attttcttat
      361 tagaatcaaa gtgactctat cttacatttg taaataatca ctgttatgtg attcaagttg
      421 acgtctttca gattatttt
//
LOCUS       KCLJ01001550             813 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 173163cal ultra-conserved element locus
            uce-855, sequence.
ACCESSION   KCLJ01001550
VERSION     KCLJ01001550.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 813)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 813)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..813
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="173163cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>813
                     /note="ultra-conserved element locus uce-855"
BASE COUNT          242 a          182 c          149 g          240 t
ORIGIN      
        1 agtcgcccgg gctccggggc tgcagcccct ccctgctggg agccacacat gggagggaac
       61 cccagaggag caaggtgaga gaaagaaatg cactatttcc aagagagagt ttgtcaccag
      121 ttagctaaaa ttgcttctga agttttgctg gcaactgttt tacatgtctg acttggtgac
      181 gaaagaactg tactgtctta atagagaact ccagaacttc agaagggttt ctccttgttt
      241 gaatgcacag cacaatgaat ttgtacccac agagcattca ccacttacat ttcaaaacct
      301 acagcacact aaacgtgaaa cttttgttca aatttcaagg attttgacag cccaagtgaa
      361 tagacactgc ctattgattt ttcccttaca atgactcttg gataacctat tttctcattt
      421 atttttaacg acagctcatg agattttaca gcaattctgc ccaacctcct aatatcaaaa
      481 tccctccttg accctgaaaa ttgtaattct gctatagatc acagctgctg aatattacct
      541 tttactaagc tggttaaata aaatatgtcc aaatcactag atcccacagg ccatgactgc
      601 aattctaatt atacagggtc tgtatttctg ctctatagta cagaaaagca cagctttctc
      661 tgagtccaca ccaaagtgtg ggaatccaga atattggttc tagttttgaa tttaacactg
      721 ctcttcaatg attttcctgt aaaactttta caagggagcc aaaccctttt gatgtgttcc
      781 atacaataaa atgctgtgta agtctggagg aca
//
LOCUS       KCLJ01001551             717 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 173274cal ultra-conserved element locus
            uce-4644, sequence.
ACCESSION   KCLJ01001551
VERSION     KCLJ01001551.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 717)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 717)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..717
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="173274cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>717
                     /note="ultra-conserved element locus uce-4644"
BASE COUNT          202 a          150 c          140 g          225 t
ORIGIN      
        1 agagaagaca gcacttgcta tcatctattt actgtcaaat taattcagct gctcctgaga
       61 tgccatctgt atcaggagag cgagggtgtc actagcttta cgatccatca ggagaagtga
      121 gagcactgtt ctgtttgatg gctctgataa tggaaagaag ctaagcaatt gcaacagata
      181 catcatagat tttctcataa ttacctgacc tgttacactg tgtcactctg ccgccaaaca
      241 cactgttttt atgtcagaag ctgtatgggc attctttact ttgatcattc tgtattctgc
      301 agatgtcagc attactgtat tttaattgac tctggggtag cattaaaaag caccttctat
      361 ttcagttgct tagacctgat gaaactgaca acctggcatt tatgaacatt aggccttcat
      421 ggtaactgtg tcaggaactg tgtttttcct aaatccccta ggtacaaata gcaaactgat
      481 gttggtaaac cagttcagtg tctatgcaaa gagcacctct gacattctct agccataaag
      541 attgccatta aattaaactc ttgtgtcaaa atttcatgtt atatcccaat gcgcaattaa
      601 gaattgacca gtgtgctaaa agagggctag agctagtgag gactgaagtt gtgatttctt
      661 gacaacttcc atattcccag tatgccccgt tagccaggat catgttttcc tcctcct
//
LOCUS       KCLJ01001552             528 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 173383cal ultra-conserved element locus
            uce-4764, sequence.
ACCESSION   KCLJ01001552
VERSION     KCLJ01001552.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 528)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 528)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..528
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="173383cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>528
                     /note="ultra-conserved element locus uce-4764"
BASE COUNT          160 a          116 c           96 g          156 t
ORIGIN      
        1 taatgccgtt tacaactctg cagtgtcgct tggtattcta atgcatcagt cagatagcac
       61 ggctaatcca cgcctagctt ttccaattaa aacatttctg taatgccaaa caaaacagga
      121 cgtccatagc tacagcaagg ctgactgctg gagtcctaat tcccactatc ttttgcttct
      181 cagcagctcc ctcaggagaa gctcccatcg gttggatgct ccgcagcaag atgaaatatc
      241 taataaggag gaaagagagt gggaggggaa cggagctaaa aggatgacat cacctgtata
      301 gaaagccttt agaaactgca ttagatcaat tggctactgg atctgcagat gcagccaaca
      361 gagcatcttt attgacctaa tataaacaca catatcagta caactgctca aattttatat
      421 cattttattg gaactctgat tattctcctt tttaattact cacatgtatc tactaacact
      481 ttcagcagct tttaggtgga ttatttttca tctatgcatt caaattat
//
LOCUS       KCLJ01001553             705 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 173494cal ultra-conserved element locus
            uce-1723, sequence.
ACCESSION   KCLJ01001553
VERSION     KCLJ01001553.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 705)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 705)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..705
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="173494cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>705
                     /note="ultra-conserved element locus uce-1723"
BASE COUNT          231 a          132 c          123 g          219 t
ORIGIN      
        1 tatttcagat tgaaaaaaag gacttgaaaa aactgacccc tacaactgaa caaactcagg
       61 ttttattttg agtgtcaagt gtccatacga gagcaatcag cacactgcaa aggttcagaa
      121 caaaagtata actgtctcaa cctatccatt tagaaagaaa gaagaaaagt gaaagcatca
      181 ctgacttcat gctttattct ctgacagtat ccatctttcc aaattgattt ttgatatccg
      241 tagtgacctg gaagggagac acagcgataa ctctcagaaa gtggaaaaca atattattcc
      301 cacaaatatg aattacttgc cggcaggtta aatctactgt gcaatgaatt atgtgaccct
      361 ggagctccta taattctttt gaattttata gagtcgtgag agggcctgtg agctttgaca
      421 agcacttaac agccaaaatc agtcctgaac aactctcttg gacatttgat ttagccgttg
      481 taggcagaac gttgccactc aattttgctt ttgaagcaaa agatgacatt cattcatttc
      541 tgaagttata gatttcattt gttgatttta ttgtaattct ttttcactgg catcttttct
      601 gttttgttat gccactcaac acaaataaat ataggagcag gttgtcaaga atagatcaca
      661 gctcaaactc tacctataag aaactatcag tatgtcaaag ttttt
//
LOCUS       KCLJ01001554             817 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 173608cal ultra-conserved element locus
            uce-616, sequence.
ACCESSION   KCLJ01001554
VERSION     KCLJ01001554.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 817)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 817)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..817
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="173608cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>817
                     /note="ultra-conserved element locus uce-616"
BASE COUNT          241 a          153 c          178 g          245 t
ORIGIN      
        1 acaatgaggt tattaaggct taattacata agaaacagta gatatgttgt gcaagcttgt
       61 agaatgtcac ttgcagaagt taggcaagat ataagagttt cctaagtttc tattatatta
      121 tttccagcag tattctttga caaactaaat aaattactgc atgtattgga cctctgaggc
      181 ttggggcaaa gaatggaaaa attatttaca aaagcttgaa aatatttaat cactagaggc
      241 agggggcaac tgtgttttaa ttagaggttc ctcaggccat tggctggctg gaggctttct
      301 caaacaacca cacaaatgca ctgaatagct gtttgccagc cttagggtca ggcctgagat
      361 gaaacagata agataattgg ctctaatgaa atccagaagg ccttggcttt cttgtttgag
      421 cttggatttg aaaagtgcgt gtggaagtga ggcttaattc aaaccagtcc tgaactaggc
      481 ccgtttttca gtgactttga tattgtttga agttctgaaa gtgttcgcca caccactagc
      541 ctgctgggct gggcctcccc agtcacctta attactgagc tttattgctg actttactac
      601 acaggaaagg agccattata tgttccatca acatcagctc tcctcagatt ggaggaaagg
      661 gcagggtgaa aggccactgt aggaaggcag aaacttcact ttgaggtagt cagatcattt
      721 acccgtgtta aatttcactg tgctatgtgt gtacattcct cacaacacag aagcccaatt
      781 tccatttttt ttagcaagtg attacttttc aaaacat
//
LOCUS       KCLJ01001555             647 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 173718cal ultra-conserved element locus
            uce-3671, sequence.
ACCESSION   KCLJ01001555
VERSION     KCLJ01001555.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 647)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 647)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..647
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="173718cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>647
                     /note="ultra-conserved element locus uce-3671"
BASE COUNT          190 a          157 c          142 g          158 t
ORIGIN      
        1 ttatttagtg tacttagaat tttgttgtag tgctcatttt gtcttagctt aaatctctag
       61 ctatagatat acctatctga cagttttcat aatctactgt aaattacctc tgccagtcaa
      121 ttagtcaggc aggcaggaag tcccaccctg gcagagcatc agtgtaagac tcttctttct
      181 caattttccc tcagacacac catcctgaga agccactttt tcctaccaca ggaagcccaa
      241 gagaacacta tagctagcag tctgacagcc aaactgaacc ctggcctttt gtatcctgcc
      301 aggtttgaaa agctggacat cacccctaaa agtgcccaga agataaagcc ggtgcttgag
      361 cggtggatgg ctgaggctga ggcccgccat cgagcaggga tgcagaacct taccgagttt
      421 attgggagcg aaccatccaa aaagcgcaag cggcgtacct cattcacgcc acaagccctt
      481 gaaatcttga atgcccactt tgagaagaac acgcatccct ctgggcagga aatgacagag
      541 attgcagaga aactgaacta tgaccgggaa gtagttagag tttggttctg caataagagg
      601 caagcactga agaacacaat taaacgtttg aaacaacatg agcctgc
//
LOCUS       KCLJ01001556             808 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 173826cal ultra-conserved element locus
            uce-773, sequence.
ACCESSION   KCLJ01001556
VERSION     KCLJ01001556.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 808)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 808)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..808
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="173826cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>808
                     /note="ultra-conserved element locus uce-773"
BASE COUNT          284 a          143 c          166 g          215 t
ORIGIN      
        1 taagtaaact ttaataagag caattaatcc gttgctggaa ttggaaaaga tcaagcccat
       61 atcctgcgag ctctaagctg aaaagtcagc acagaaagga aacaaccacc acagcagtga
      121 taaaagtgat cttcttgaga aaaatggatg gtatttttat tttgtttggg ctgattctgt
      181 gctttgtacg gcaaagtgaa aaggaaaaca gtagctgcag taaaaggaaa aggccaacag
      241 tgacttttat ttacaattac caagagacag gctattattg accatatgtg ccacaatcgc
      301 cctccttatc atgggctggc catcgtgtcc actgggagct gttaatgaac tgggtaattg
      361 agctgctgac atgtgttacc aaaacaaaac aataggaaga agagacaaat gaacatttta
      421 tttgccaatc agagtaggtt ccgcttttca gagaactgtg cctaagtaag tggctgaata
      481 cataaaacag tgcattgaag gcaagcagat gcatgcacaa taatggttaa ctgacagcct
      541 atggcccatc tgtgcttaac attttgttaa agaaattact tgacttgcta aagagacaaa
      601 tcatacagct gccccaagtg ctgcattata agagataaat cattagctaa actgtttcat
      661 gcttaaaatg acaatgcata ttaacagtta tgcagggaca ttttgtcagc acagcttgat
      721 gcagttataa gtgacaaaaa atgtgacagc tcatagctat tcaatgattt caacttagaa
      781 gagaatgaca acactgtgaa aacaattt
//
LOCUS       KCLJ01001557             654 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 173935cal ultra-conserved element locus
            uce-5256, sequence.
ACCESSION   KCLJ01001557
VERSION     KCLJ01001557.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 654)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 654)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..654
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="173935cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>654
                     /note="ultra-conserved element locus uce-5256"
BASE COUNT          206 a          148 c          103 g          197 t
ORIGIN      
        1 aggctgtata caataaagtc ttaattcaga aataaaaata tgcagctcga gttttcaaac
       61 tagaccaacc aggctcagag cccatcgggc aaagccatgg ctctcaacac gcagctttta
      121 gaaatattta gctaaaaata ggtaatgctt cagatcgtag caaaaattac ctaaacttaa
      181 gttaatgctc cttggatcaa aaacactttt taaaaagtgg atacctgcgg tccatctctg
      241 gcttcataga agtcacccac tcctattttt gcactgaagc tgaaattgtc ccttgagata
      301 tccattattc catttctgct gagatactga aaaaatcaca tatttttcca cttcagcttg
      361 caaataatta caacccagct ttgatgcaca gctaactttg tgactgtaat gttttgcatg
      421 ttctgtcaaa gggatacgcc atcaaatcag taacagttac attacacctc acatcacaga
      481 aaataagtac ctctattgga gagttttaat tgcaagcatg cttactaaca ttaggacacg
      541 tacctttact acttcaggat actgtctcag cttctttcca caaggtgcaa aatatgctac
      601 ttctccttga agacgaccac caaagtttct tattcgggtt tctctttgcc agct
//
LOCUS       KCLJ01001558             387 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 174044cal ultra-conserved element locus
            uce-5735, sequence.
ACCESSION   KCLJ01001558
VERSION     KCLJ01001558.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 387)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 387)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..387
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="174044cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>387
                     /note="ultra-conserved element locus uce-5735"
BASE COUNT          115 a           53 c           64 g          155 t
ORIGIN      
        1 gtttcaaaca tctatgtttt aaaatgcatg gaaaatttta tgaaggaata ctttatggag
       61 attctccatc ctttctaaca agcaacaatc ttggctctgt caactgtgca aaactattta
      121 atattctttt catgtggaag ctgttgtctg atcattagtc atgtttagtt gcacctgcaa
      181 ttattttttc atatatttaa tatgccaatt ttattgcagt gactgctctc aggaggttta
      241 taatagtgat taaagcaatg ttaattgttg tgttcatttc aggattactt caatgtcaat
      301 gtgatcaatg gtgatattgg gaaatgtcaa agtttccaca agtttagaaa gctttaatta
      361 gaatttgctt ttttaaaact ttgattt
//
LOCUS       KCLJ01001559             551 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 174146cal ultra-conserved element locus
            uce-3693, sequence.
ACCESSION   KCLJ01001559
VERSION     KCLJ01001559.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 551)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 551)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..551
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="174146cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>551
                     /note="ultra-conserved element locus uce-3693"
BASE COUNT          159 a          117 c          107 g          168 t
ORIGIN      
        1 ggcttgggaa gtatgatcat ctcagtgcca cagactcctt attattttct tttctgtttt
       61 ttttcccccc aagactatcg catttacgta atcgtcctct tattagggag attctgctga
      121 actgctgaca atgatgtaca gtggtgctgc gctggcatga cgtttgggga aaacgattct
      181 gctgcaccac cacacaaaac caattagaga actattttct gcgacaggtc aggaatttac
      241 attgtttctc atagaaagat gtgcttttta atttctttat taagatgaca tccatgtccc
      301 ttgcgacttt tagggatgac aatcatttgc tcatcacatg ggaaagtaca atcagcaaaa
      361 tcgcattacc agtacggggc aacgccagaa actccaagca tcattccgca ttttccaaat
      421 gaactagttt gagaaccaat aattataaaa atatatattg atagaatttt ttgacaggac
      481 ctttagacat ccaccagggg ggtaaagtaa tgatagtcca catacagctg gctacgctat
      541 gtttgccgag c
//
LOCUS       KCLJ01001560             651 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 174250cal ultra-conserved element locus
            uce-6764, sequence.
ACCESSION   KCLJ01001560
VERSION     KCLJ01001560.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 651)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 651)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..651
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="174250cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>651
                     /note="ultra-conserved element locus uce-6764"
BASE COUNT          196 a          146 c          103 g          206 t
ORIGIN      
        1 catttcccag aagcttttct ttttcttacg cgagtgaaga catttaagca aatagagttg
       61 gagttactga aacatggttc cccaaacagt gtagaataag aaaacgtaaa ctaaaccctg
      121 cagatttctt acctctttac accatctgtg cagtattgct cttaggcctt ttacattggt
      181 catcctggga acaaagctga aggcagattc cagcagtttt tccattcact attcattcag
      241 aggttcatca gctccatatg gatccagcca actgctgtgt taaatcagag ccttttccca
      301 gaattgacat ggtaatgaag tcatggtatt gctcacagaa aaggcctcca taggtatttt
      361 cctctctaac aaatccagcc ttttcacccc attcactccc taaaattatc tcataacatt
      421 acaacatctg tgaactgggt ttttgccttt taatgtctag catgttttat tacatgactg
      481 tgcattacat actggttaac aagactccta cacaaccaag gaaataaact tgcactcttc
      541 ccagctcaga ttgttttgtc ccaatttata tctgcagata gagctgtcca aactactgat
      601 atacaagatg aacttttatt tctattggaa agtaatattc cagaatgaaa a
//
LOCUS       KCLJ01001561             665 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 174361cal ultra-conserved element locus
            uce-2865, sequence.
ACCESSION   KCLJ01001561
VERSION     KCLJ01001561.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 665)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 665)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..665
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="174361cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>665
                     /note="ultra-conserved element locus uce-2865"
BASE COUNT          144 a          173 c          189 g          159 t
ORIGIN      
        1 aggtcagaat cttttgaaat cctggtgtgg catcaagttc attagtagtc actgtgggag
       61 gtcactttct gagtcatcag cagtgtttga agcttcccaa tggcccggtt gagaaggctg
      121 tcccttgtga cctgagtgca gacagcaagt tcttttccct ccaggtggtg taggaatgat
      181 gtgctcgctg agcgaacaag gcaagcagtt ggcagtccaa gtgtcaaaca tcctggggat
      241 ggatgtgtgc ggcattgacc tgctgatgaa ggacgacggc tcattctacg tctgcgaggc
      301 caatgcaaat gtaggtttca ttgcctttga caaggcttgt aatttagacg tagctggtat
      361 catagcggac tatgccgctt ccctgctggc ccccggccgc ttgacgcggc gcatgtcctt
      421 gctctccgtg gtgtccacgg ccagcgagac tagcgagcca gagctgggcc ctccagctgg
      481 ggccgctgtc gacaacatga gtgctagctc cagctctgtc gacagcgacc ctgagaccac
      541 ggagagagag ttgctcacca agctcccggg ggctctcttc aacatgaacc agctactagc
      601 caatgagatc aagctccttg tggagtgatg ccacgtgtaa ataggtgacc aacagaactc
      661 tctct
//
LOCUS       KCLJ01001562             506 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 174471cal ultra-conserved element locus
            uce-3277, sequence.
ACCESSION   KCLJ01001562
VERSION     KCLJ01001562.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 506)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 506)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..506
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="174471cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>506
                     /note="ultra-conserved element locus uce-3277"
BASE COUNT          157 a           97 c           92 g          160 t
ORIGIN      
        1 tcctcctcca ccaatatctt tgattgtaaa tgtgttttct tgacccccta ctccatacat
       61 gttagcacct aaccttgttt catctgtatt tacagtaatt atatgcataa tgtagcatat
      121 tattgtctgg acttcctgtt taatcagtat tcttaaaagt gcagctgaaa agggcaaaca
      181 aaattaaagc gttatatacc aaaacaagtt tgattttcta agctcccagc attccaacgt
      241 acagagattt gttccaccaa gttttgcgat ggcttgcaga tgggcaatga ttaatcagag
      301 agctgactgt gaagtagttt gcaattaaac tggaaagctc tgaagcatgc taattgaatc
      361 agaaaattag agacactgaa caataattgg ctatttctca tgcagcaggt gccaggccac
      421 tcagctgtgg aacaaggtat ttaaggcaca ttagcactag gaaaaatatt tcttgatatg
      481 gaacagtcag attttctgct catttt
//
LOCUS       KCLJ01001563             466 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 174581cal ultra-conserved element locus
            uce-2433, sequence.
ACCESSION   KCLJ01001563
VERSION     KCLJ01001563.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 466)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 466)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..466
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="174581cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>466
                     /note="ultra-conserved element locus uce-2433"
BASE COUNT          148 a           97 c          112 g          109 t
ORIGIN      
        1 atcctgatgc aaactttgac atttaccaaa agaaaaaaac aaacaaacaa aaaaagcttc
       61 caagcaactt ttgattggct tcattcagac aagaaacact gtaatggggt tacagagtct
      121 gagaacagtg cagaagaaaa atcaactgtg tgttgctaga atctagtaaa tgcatgtgaa
      181 attctaccat agagtttgtt ttcaatccat gtggaaggga gggttcgagg gaggggagca
      241 ttattacagt ccacgagagg tgtctcctct tcggagagcc cgtcatcgta cagtaaggag
      301 tcggagggcg tggaagctgc aaggtccaag tagtcctgag aaacggacac aaaaagctgc
      361 attaatgcct gaatgtgcac ctctttacag caaggaatac ccactgcatt aacctttctg
      421 ctctggcacc tgaggaggct ctgctttcca cagcagctct ggaagc
//
LOCUS       KCLJ01001564             643 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 174680cal ultra-conserved element locus
            uce-5934, sequence.
ACCESSION   KCLJ01001564
VERSION     KCLJ01001564.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 643)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 643)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..643
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="174680cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>643
                     /note="ultra-conserved element locus uce-5934"
BASE COUNT          195 a          112 c          119 g          217 t
ORIGIN      
        1 tgtaaagaag tgaatgcatt gacacttaat tagtaaggaa atagttgtct tcttaaagtg
       61 cacctatgaa tgcttgtatt ttgctgcaat tccactgttg atttttctat ccatgattga
      121 aatgtcctca tttgctttag ttctatatgt gtgtatgcag caggactttt cctccgtata
      181 agaaattatg catcagacaa aagcctcata aactgaccat ttgtcctttg gacacaatag
      241 cctgcccagc ccctctgctc ctcctctcca attatgtgtg attagtctca gtgtgttgtg
      301 tcaagaaggg ggagtgtgct gagtgcttat tatctgttta ggtacaagaa gagcacattt
      361 aggttctgac tatgaatgga aagtgagtct ttatcaggag taaaatctaa atgctactat
      421 cctagaaatt gcataaattc caagaaacac tgtaagaact aaaggatttt ataatgtaat
      481 caaactatct cccttgaatt agtttgtatt gtgatatatt gtgggccata tatttgatat
      541 atacttaatg tgtttttctt gtactggaaa agacaaaatc ccacaaaaaa acaggagcag
      601 tatccctgac agtttaacag actgttttaa tgactcctca gta
//
LOCUS       KCLJ01001565             756 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 174788cal ultra-conserved element locus
            uce-3676, sequence.
ACCESSION   KCLJ01001565
VERSION     KCLJ01001565.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 756)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 756)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..756
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="174788cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>756
                     /note="ultra-conserved element locus uce-3676"
BASE COUNT          227 a          134 c          158 g          237 t
ORIGIN      
        1 tttttccaaa ggtaacagga aaatgtccat gtggatggta ttagtgataa gcatagtgtc
       61 cacaggagat ctagggataa ggaatgtgtt tagttttaca ggcctgtttc cttatgcaag
      121 taagtgactg tgtgatctag caacctgagt tgaatagcca gtcctttagg tctttcacag
      181 gctatgaata cagtaagagc actcaaccct tctgaagata tgcaaatgca ggcatttaaa
      241 agatttacat tcatctttca caggcctcag aaatataaat atgaaatatc cagaaccttg
      301 tcacttcagt aataattaag ctgatggcct attatgttcg attgcaaatc aatatagtat
      361 cttttggtgc cacttgagtt cttgagggtt ggcttggggc cagcactagt tatacaattg
      421 aagagctgca gctgcatcga aaacttctct gccatttcca ttcagaaaga atagactggt
      481 aacaatggtg gccagcctct tcatagtaat tgtgtgcaag tacacatttt gaaatagtgt
      541 ttttgttcag caggtgctgt tattttagtt taatttgaat tttgaaatat ggaggagaga
      601 aggggcctaa tcttaacagc atctaaccta cagctgttca gaacaggaca gcaaacagca
      661 tatgttgctt agatgaaaat cataattgct tattcttcct ggcatattag cagaccagtg
      721 ctgagcctct gaaattatcc agcattttca gacttt
//
LOCUS       KCLJ01001566             541 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 174902cal ultra-conserved element locus
            uce-5275, sequence.
ACCESSION   KCLJ01001566
VERSION     KCLJ01001566.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 541)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 541)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..541
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="174902cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>541
                     /note="ultra-conserved element locus uce-5275"
BASE COUNT          165 a          105 c           90 g          181 t
ORIGIN      
        1 aattcaaaga gttcagagtt acaaaagcaa aactcaactc cataattcac ttgcttaatg
       61 aacgtctttg aatatactga agatctgaag cctgaactaa tcaatttctt cgctgtgccc
      121 tagccggtca gccatgctct ttaatttaat gaaacaagag ttttagatga aatagcacat
      181 acacatcaag aaagaattgt attgttgcac tttgaaatgt gtccaactgt gcaacttcat
      241 ctaatgataa tttttttaag aggccatcga tttctgaaag acttattgta ctagcatctt
      301 gatgaaaaag tgaatgtcag catatctaca gaatacttac accctgccat taatgcttta
      361 tttggcagac aatgactact caattgaggg tcctctgggc tgtgcaatca tttagctttt
      421 cttctcttat gaggtcctta gtgtcttgtt ccagttcaat actcttttta ttcaccatta
      481 tagtggccat aagtgtgaat tttatgggaa cttgcaaact cagtcataac tagagctttc
      541 c
//
LOCUS       KCLJ01001567             831 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 175009cal ultra-conserved element locus
            uce-999, sequence.
ACCESSION   KCLJ01001567
VERSION     KCLJ01001567.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 831)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 831)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..831
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="175009cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>831
                     /note="ultra-conserved element locus uce-999"
BASE COUNT          257 a          163 c          186 g          225 t
ORIGIN      
        1 taatgtgcat gtgtgcaaaa atcttgtgca ttttaaattt ctttcagaca gtttattcag
       61 tctattggag taaagacaga atttctaaat tgtcaagaag atgccagttt cgggcgtcct
      121 taggataagc caatctattc aattcagaca aaacccacca gtacataata gtctttacaa
      181 gctcataaac caccatacca cccaagatgt taacaagctg gcatgttttg agcatcaaag
      241 atagagagga aactgtgttt acatgtttgg cacaaaaact aatgaggaaa gtcaattggc
      301 cctttgtctt gagggtctga agagccgcgc tctaatgttt ggtttcttgg ttggcacttg
      361 ttcaagtaat cactcgtggc ctgacaaagc agcacttgtg ttttattagt ggccatgctg
      421 aactctcctg cctgggctat gttgtctctc aatagagcac tgcaccagag ggcacactta
      481 tttgaaaaca ctaaatcaga gcatgatgat ctttgcccga caaatacaac caagagagga
      541 ggctctcctt ttgttagaga aagtgaggaa acaacaactg gcatgtgtgt acatgtaaga
      601 acagtcctga aacaccagtg acaaaatggg aaaaactttg ttcccataat gagatgctcg
      661 gagccaactg gatttgctcc atgcttggga acaggacatt ggcaaagctg aaattcatgt
      721 ttctcacgac tgggagagca gacatagcat tgttaatgtc ttgggtcagt ttggcacgag
      781 caaaaaacct acaggctcag gaagaaggtg caaggaattt gaaagttact g
//
LOCUS       KCLJ01001568             682 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 175119cal ultra-conserved element locus
            uce-1800, sequence.
ACCESSION   KCLJ01001568
VERSION     KCLJ01001568.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 682)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 682)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..682
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="175119cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>682
                     /note="ultra-conserved element locus uce-1800"
BASE COUNT          191 a          128 c          163 g          200 t
ORIGIN      
        1 aaatgagatg gttacttgtg gcacgggagc gggggagcct ggccggggag taattcccgg
       61 gaattgtgag cggacagtgg gtccgcgggg agcgctggca atcatggcgg aaacaatgtt
      121 tgcatcgatc agctgtcacg gtgatttatg gcttcatttt gctgtaatgg agaattagtg
      181 gaaagattat cagggactca acactttggc ttgttaccca tgtccagacg agcaatttgt
      241 ctccctgaag cagtgaaata cttgtgacag ctccaacact aattcaatca agagaaaatg
      301 ttggaattaa tttgttacaa gaaaatttaa atatgttcag caaacagtaa ccgcagagca
      361 gcagctgatt tattgtgctc ggcaagatat cgatccgctt cgatctgctc catgttgagg
      421 ttttaatgtg taataatttc caatttaaag ctccttttca agatcacggg tttaaagaga
      481 gggcaggctg ggtctcaaga cctgattagg agcctgttgc aatggctttg tcaaaagcct
      541 gtttgaatgt aaattcatag ttatcttttg cactatcttt aatattcttg acatggattt
      601 tattgtgtgt caaacctcag gccagctgcc tgccacaacc attaatgaaa catcttagga
      661 aataaatctc agtctttata ca
//
LOCUS       KCLJ01001569             817 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 175335cal ultra-conserved element locus
            uce-1277, sequence.
ACCESSION   KCLJ01001569
VERSION     KCLJ01001569.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 817)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 817)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..817
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="175335cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>817
                     /note="ultra-conserved element locus uce-1277"
BASE COUNT          277 a          160 c          155 g          225 t
ORIGIN      
        1 gattttcaca acagaggcca gcattcgaag ggaagaactc ttccatggga agttggttaa
       61 aataacttcc ctgtaacttc aggagaaact gttaaccact gaaggcttta taatacctct
      121 tcccaaactg taagaattgt cacttctctg gcacccatgt ccccacgtta aaaaaaacaa
      181 accattgctc ctttgtattt gcttcacagg cacaaggaag caggaaacat tgtgctaaca
      241 tgactatagt attgatgaat aaaaactata acccccaggc taagctgcca aataagtagt
      301 gaattaattt ctgtaaagta ctccaatatt acaaaggtgt gttgaaaggt gtctgctcat
      361 gtttcaaatt aaacgcactg ctggtcagca ttagcacctc agctttgaac agcagccatt
      421 tgcctataac acttcagggg ctgggaaaaa cggatttgcc gttcacactg gaataattag
      481 aacatgtcag gaagaattaa tttcctcatt tttcaaaagg atacacagaa attaccatgt
      541 tattatatga cagggtccct tggagaattg tattaaattt aatttctagc gcagcccaca
      601 caacaaatta aagtcataaa taagatggaa agaagcggga cgcagagcat atgtttatgg
      661 caatgagtga agccaaggga ccagaaacaa ctatcttcat ttcattttat ttaaatcagc
      721 cagacactgt gtatctgaat gacagcactt gttaatggtg ctgagattat aggctcctta
      781 attttaggaa acagaagcag tcactcagta tttgaaa
//
LOCUS       KCLJ01001570             586 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 175447cal ultra-conserved element locus
            uce-2455, sequence.
ACCESSION   KCLJ01001570
VERSION     KCLJ01001570.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 586)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 586)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..586
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="175447cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>586
                     /note="ultra-conserved element locus uce-2455"
BASE COUNT          165 a          108 c          138 g          175 t
ORIGIN      
        1 aggggatgga aagagcaaga cacggccctt tgtgttaacc ccacggttct gtgcgtgcaa
       61 gcgccatcct gtcacctctc tcagagcatt gacaaaggca aggagcacaa gatccacagc
      121 aaagctggaa tctcgctttg gaggggaggg gagtacacat ggcttcagag gttgggtgta
      181 tctataattt ctgctatcct gcaagagtca ctagaatatt gtactttccg ctacttcagg
      241 atgttctaat gaaccaatgt ggcaagacta ctggacttaa tttaatggta ctatatatta
      301 atactcctta ttatatcacg cttgcactaa agatggggag tgagcagccc tcttttgagt
      361 gcattgagtt atgaataaag gtggtggaag ggtataattg tattatcaca tgtattccga
      421 atgttaagaa tccaagctac gttgaaatca gcaatccagg gttggtaatg ttggaggaca
      481 cattcatttt taccttgtgg atgcatagtg ctgtaggggt cactgttgta tacagtctgt
      541 tttctatttg ttaataaaaa aatctacagc atcattgcat aattct
//
LOCUS       KCLJ01001571             354 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 175557cal ultra-conserved element locus
            uce-5803, sequence.
ACCESSION   KCLJ01001571
VERSION     KCLJ01001571.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 354)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 354)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..354
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="175557cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>354
                     /note="ultra-conserved element locus uce-5803"
BASE COUNT          103 a           71 c           69 g          111 t
ORIGIN      
        1 aagcaaatca gcattttgcc tacagggtac acattttcaa cctgtactat tttatatcag
       61 ctttttgcat gccttggctc tgtgttcagg agctgggatc catgggagaa gatccatgtg
      121 aatgcaacca ttagaagcat tgggaaatgc caaggtaaac atttctttcc ctttgaagcc
      181 cccatgccta actctacgat actattgact caagaagtaa tgctgaacac tggaagtgtt
      241 cagtcagcat tttaaactat tatgagctac cttctgaacc attgccaagt taatagacaa
      301 tgaaagataa tgagcttgaa attgggtgtt aaattgcatt tttggttctc tcct
//
LOCUS       KCLJ01001572             315 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 175662cal ultra-conserved element locus
            uce-6021, sequence.
ACCESSION   KCLJ01001572
VERSION     KCLJ01001572.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 315)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 315)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..315
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="175662cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>315
                     /note="ultra-conserved element locus uce-6021"
BASE COUNT          103 a           61 c           53 g           98 t
ORIGIN      
        1 gtcccgggat gttctacaca gttaaatacc taaattgtaa cttaaccgta tcattagctt
       61 tatctgctga caccagggat gtaggtaaag aattcattta atttgatagt gtataaagca
      121 cttaaggtac ttgatgattt attgatcaag tagaaatcag ggcatccaac agctactatc
      181 cctactcaca cgattaaata tgaaattaac ttttttgtca atttgcgcaa caagccttac
      241 gctatgaaga acagaagaga acagctcttc aggtataaat cttccccttt tgctaatatg
      301 aattactgcg agtcc
//
LOCUS       KCLJ01001573             574 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 175760cal ultra-conserved element locus
            uce-7376, sequence.
ACCESSION   KCLJ01001573
VERSION     KCLJ01001573.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 574)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 574)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..574
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="175760cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>574
                     /note="ultra-conserved element locus uce-7376"
BASE COUNT          159 a          119 c          119 g          177 t
ORIGIN      
        1 actcgatgca tgcagaggga caccaatggt gcggactgcc ttagggccag tgttctgtag
       61 ctttgggact gcatctgtgg gcagataggc agagatgttt cacacgtggt cgtaaagaag
      121 gtgtgtttat ctctgcagtc tcaatttgat aaaaggctgc attgctcata cctcattgcc
      181 tccttgtatt tctgaatgag tttctgcttc tcttccttct cctccaccca gtactcactt
      241 ggaatgacaa agttagacgt gatccggcat tctgggcagg acctgggaaa cgaactgtgc
      301 tgcaaaactc cacattacag ggcgcctata taacaaacca cggcatataa agaggtacat
      361 atacttgttg taaaatcttt tcataagtga agacaaccta aattctcttc aatggcaagg
      421 gcagctggtc agcttgtttc agaaaagaaa cacttcacac agactccttt ttctttataa
      481 ttaaataaat ttattttggt attcctatat ttatttgatt ggaactttgt attttctaga
      541 acagccaaat ggagaaatgt tttgccaact gaat
//
LOCUS       KCLJ01001574             707 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 175870cal ultra-conserved element locus
            uce-186, sequence.
ACCESSION   KCLJ01001574
VERSION     KCLJ01001574.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 707)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 707)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..707
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="175870cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>707
                     /note="ultra-conserved element locus uce-186"
BASE COUNT          199 a          167 c          131 g          210 t
ORIGIN      
        1 gctgctctga aggcagtgaa gttactttac ggatgaatgt gacccatttt atgcttttca
       61 agaacctaac aaacaataaa tgtcacatcc ccgtcacagc tctgatgctg ttcagaggac
      121 agatgtacaa tacctctttg tcttcttcct gctcgtaacg agcagtgtag gtcatctgca
      181 tcattaacat ttgcagctga tgcatttgtg tagcctgtgc acgcttcttg gagctgcata
      241 gaccttctca ttgttttcag aaccttgatt ttttgtacta ttatcatcat ccaaatgtat
      301 ttaaggatga aactattaga aacacaattg gtgaattaat gtcatgaggg ctgctgctgg
      361 cagctcatca atttttgata tgccactcag acaaatgaaa cataagccac ccagaacaag
      421 gggacctttt gacacttcaa aggaaacccc tatgggtggt ttcctcttga agctgcacta
      481 aactggctca atctcctcag ctggaagctg ccaatgtctc attaacccct aaacaggccc
      541 tgcatgagct tttcttttca gctataatta tgccatgcac tcctgttatg ctgcactgaa
      601 ttgcaacact gtcaccagca cattataaac atccacccta attgaaaagc agattagact
      661 cgtgttaatt agagaaaaag cccgcccact tgcatgcatt atgattg
//
LOCUS       KCLJ01001575             731 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 175979cal ultra-conserved element locus
            uce-7906, sequence.
ACCESSION   KCLJ01001575
VERSION     KCLJ01001575.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 731)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 731)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..731
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="175979cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>731
                     /note="ultra-conserved element locus uce-7906"
BASE COUNT          218 a          132 c          145 g          236 t
ORIGIN      
        1 tatacagtgt gacaattact taaagcatat atttatagaa atgcctttat atgcccatcc
       61 tttctacaca cattcagact catacataca cattttttgt atgtttgcat ttgttcacat
      121 atatcataga aaataaaacc tgaaggggaa ggcagctggc cagatttaat ttgtctgctt
      181 gtatttagca cttaagggct tatatactca gtttgctcaa aagagtgaag aagtactctt
      241 gcttatgcct caaatcagaa atgcatgaag tgcagctgca gagataatac attctcccca
      301 aaggctttgg ctgagcaaat taggtgtcaa tggggtgcct gcgcaggcag tactctctct
      361 aattagtctc ttgagcctag ttggtggcag gtataagatg atctaatcaa ttggtctgtg
      421 tctgatggta cgtgtaaaaa tcctagcagg cagagctgtc tcccacaggt cactcacctg
      481 cacagcagga acgctcattt tcatttttca tctcttctat cacatgatgc tgacagttgg
      541 ttttaaggaa attgaatcct atctagttca tagggcatgt aggtcaaaat aaagttgcat
      601 tatgggtact ggcgatccaa ttaattaata tttatagcaa caagttgcac atagatatta
      661 tctgagtgca aatagtattg ctaatgtttg gttggctttt taaaatgatt tctctaacaa
      721 aggtaggaat a
//
LOCUS       KCLJ01001576             762 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 176091cal ultra-conserved element locus
            uce-938, sequence.
ACCESSION   KCLJ01001576
VERSION     KCLJ01001576.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 762)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 762)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..762
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="176091cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>762
                     /note="ultra-conserved element locus uce-938"
BASE COUNT          239 a          126 c          163 g          234 t
ORIGIN      
        1 acttatgaag gaaaccacat agatattata cacagacaga ggaagtgggg tagaagcccc
       61 acaagcaact ctttctgaag ccagttcaat ttctgtgtgt ttaagctatg aattagttca
      121 tttatattta cttttatgaa gctgattaac cagagcttct ctatctgatg aaaatcattt
      181 taattgtagt gttaggctcc tgtgtaatat ccattacatt atgaactgtt taaattctac
      241 atgggtattg tgtaaattgg ccctttgtga gctgagaagc aattacgacc aaacagctct
      301 cttttaaatg gctacagaac tttgtggtgt tgttcaggac aatcagaaac aaaggaggct
      361 gtttaattgt aatttaatgg aatatcaagg agtccatggc attagatgct ggcaacagag
      421 agcaggagag aaaaattaac tgcaattatg tttgattaaa gctatccttc tcaataatca
      481 gccatcctga caggccatgg ggctctagtg ggtttcagga tggcaaaagg tgttgagcaa
      541 tattagggcc aataaaggag atattagcat agctaattac agcactgcaa aacctgtaaa
      601 agggacctct gtgtattgta atgtgtgaaa taattggccg aggccattat caattacata
      661 aggaatgaat ttggtttgtc agagaaaagc tgatgagatg catttcattt gacactgctc
      721 ctttccctca cgtttgcgtg taactaagga cttatcagct tt
//
LOCUS       KCLJ01001577             409 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 176200cal ultra-conserved element locus
            uce-3442, sequence.
ACCESSION   KCLJ01001577
VERSION     KCLJ01001577.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 409)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 409)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..409
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="176200cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>409
                     /note="ultra-conserved element locus uce-3442"
BASE COUNT          108 a           94 c           95 g          112 t
ORIGIN      
        1 catcccggtg attagctggg tcggtactaa agaacattag gaattttctg ccgctctgat
       61 tggtaattaa gtgactcgtc tactggccga cagtcctgta tgcttcccca ggcagttgtt
      121 agttcttcga aaaccactcc tgacaaaatg aggtttgccc ttggtacaca gataatgaga
      181 ctcagcttga caggtgtggc gcgattagag cgcggctcgg cgcggctctc ccgctacagc
      241 cactcgtggt aaacacactc attacaaccc gccggtcccc ggaggcaaag catgtttgac
      301 attattaatt ggcttttctg tataaggagt caaatagatg aaaaggttta tcaagctgaa
      361 ataattaatt ttgcctgaat tcgctgacag ttcagaaaag accatttta
//
LOCUS       KCLJ01001578             764 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 176304cal ultra-conserved element locus
            uce-1775, sequence.
ACCESSION   KCLJ01001578
VERSION     KCLJ01001578.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 764)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 764)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..764
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="176304cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>764
                     /note="ultra-conserved element locus uce-1775"
BASE COUNT          266 a          116 c          135 g          247 t
ORIGIN      
        1 ctttcttcag atgtcattcc tctgtatgca ctcatttctc caaggcttaa gatctaaaat
       61 tcctgtaaca atttggcctg gaaagatgaa tagcttttaa aacattgtgt tgattgtatt
      121 aattgggaag ggagtaatgg gtttagaata actggaacag tttttaaaca gcttgattac
      181 aaggattatc acacacacat tgagatagac aaatctaggg aaatgagaat aatttctggc
      241 tttcctgggc atgcatttaa agtagagaaa tgtagaacta aaagcaaata gcacaacctg
      301 ttttaatcaa agtagtctag caagaaacaa tcaattaaag aacagtctga ttctctgtga
      361 catcaatgta tgaaaatctg ttagacgcca gattgtgtct caagacacat atgatgaact
      421 gaacaaaatg acctgctaat agcttttacg ggtaataaat gcatcatgtt attggtaatt
      481 ctgcagatgg taaatcaagc taatatccag gctgaaacaa gctacttgtt aaatatactt
      541 caaaaatgtt cctccttgtt attccataat tgtgtcacac agaaaaataa gatgattgct
      601 acttacattc aggcatttta aattaagatg tgtttcaaca tgcagacatt ttaattttca
      661 aattctttag agaactgatc tgagcttttg aagcacagca tttgtattta gattagcaga
      721 aattgtttca tagaaatgtt ctgttcatga tgtaaaagag attt
//
LOCUS       KCLJ01001579             617 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 176416cal ultra-conserved element locus
            uce-956, sequence.
ACCESSION   KCLJ01001579
VERSION     KCLJ01001579.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 617)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 617)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..617
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="176416cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>617
                     /note="ultra-conserved element locus uce-956"
BASE COUNT          173 a          104 c          128 g          212 t
ORIGIN      
        1 agtcatatgt aatttttatc tcttgacctt taaacgtaag cagcagtaaa atgaagaact
       61 atggcagtca tttaacaccc tgcctgtact aactggtttc tgcctgtgag ccgtggtttt
      121 aaattggcta atgcagaata cttgcagagc taataataat tcagattact tctgtcagct
      181 attccggttt catgggtaat ttagtagttg aataaatttt taaaaaaatt cattcgttcc
      241 catgcactgt tatgaatcag tagatggttt accattggca gcagtaactg taagaagatt
      301 taaattgcta ctgaaaagga tttgagtgaa ggtaatgttt tataatgttc taagccatat
      361 gcactacttt caggcctcat cagttttaca ttgattccta gtgaagtgtt taattgcatc
      421 atgaatgcaa tataattcag ttctttttgc taatatggta tatatctcaa agtgatatac
      481 agcactgaca gtgaagactc agggttttct taggatttta aaagatgcct ctgtgtgtgt
      541 cgcgtgtgtg cacatctgtt gctcagtgct gagatctgcc agctctccag gggtgtctgt
      601 gtgggcacca gcaggta
//
LOCUS       KCLJ01001580             683 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 176525cal ultra-conserved element locus
            uce-4713, sequence.
ACCESSION   KCLJ01001580
VERSION     KCLJ01001580.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 683)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 683)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..683
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="176525cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>683
                     /note="ultra-conserved element locus uce-4713"
BASE COUNT          222 a          146 c           88 g          227 t
ORIGIN      
        1 ttttaagaat attaacatac acacatcaat tacaaataca gttactaata ttgctacatt
       61 taaggtacat gcatgtaggg tggagatcat actattagca gctctcctat atacatatac
      121 atttttagaa agagaattca gtctatttag caattcacta acaaagctat tccttagctc
      181 atccctgcca taacctgctc tattcagaaa catatgggaa aagacattaa ataaccagtg
      241 aaaaccatgg acttctggta ttagtgctac acattgcata cccctattca ttattccacc
      301 tcccttgttt aatctatcat taagactcag tgaccctaca ctaaatttaa agcagatcct
      361 tccttcctcc catgcctaaa ttcacatact tttctagttg gggatgccct caagtattag
      421 ccactctaca gggtttctct aatctcagct ctgaactatg ttgtgctata gaagcaagaa
      481 attgctggtt tacatcttta actatggaat cttccacccc cctcctttac ttaataagat
      541 gaaaaccttt catgtataac atattcaaca tgtttaaaaa attttcctct atatgatgta
      601 gaataaaagt tataaagttt taaagcactg ctgctctgaa cttgtgtccc atataattgc
      661 attggaaaca attttaaagc ttt
//
LOCUS       KCLJ01001581             590 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 176632cal ultra-conserved element locus
            uce-968, sequence.
ACCESSION   KCLJ01001581
VERSION     KCLJ01001581.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 590)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 590)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..590
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="176632cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>590
                     /note="ultra-conserved element locus uce-968"
BASE COUNT          184 a          102 c          143 g          161 t
ORIGIN      
        1 ctgtgcaggt tttacattgg aagatacaaa gctgaaagtg ggtagttgtc cttgcaaaga
       61 agcttcctcc tacagtggag ccatttatca cagtcctaaa tgaaagcatt ccttggacac
      121 aaatgtcttt ttcttccttt gtctgattac tgaggggaaa agtgagaagg aaatgtcaaa
      181 acagtgaaac agtggtgtct agagagcagt cactttggag ctcaaccagc ttttgtgaag
      241 gcctggatga tttgtcaaat ggttgtggca taagtcaagc cctgaggttg aaaggtcttg
      301 acctaaggag tgttgaaatc aggcagtata agcaagaggg ctgctagaag tttcagctgt
      361 agtggagatg aacaatgatg ggtgctggac acaacaaaac ctaatctgca taattcaggt
      421 aaggaatttt attgaatctg acaagtatgt gacaggctga gaaagagaaa agaacatgct
      481 cttgctggga accttcaaag ctcttgttaa ggtatgtgga aataaatgac agctaatctc
      541 ttactactgt aaacaatacc attttacaca gggctcaccc atgacctttt
//
LOCUS       KCLJ01001582             562 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 176745cal ultra-conserved element locus
            uce-5300, sequence.
ACCESSION   KCLJ01001582
VERSION     KCLJ01001582.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 562)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 562)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..562
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="176745cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>562
                     /note="ultra-conserved element locus uce-5300"
BASE COUNT          150 a          106 c          145 g          161 t
ORIGIN      
        1 cttgtgttct catacttact tctttcagca ctagagtggt ggtattccta tagattcatt
       61 ttgtgaatct taaagctcag aagcttcttg tgacaagagg agggagttag tgctcgctta
      121 tgttcagttc ttgctgtgtc aatgactgaa ccatttgatg ggttttccat tcaaaggcag
      181 atcgggagcg gcgcagagaa atttccttac tagatgacat ttcatcgcaa tgtccgatcg
      241 tttggggcaa ataaccaagg gaaaggatgg gaaaagcaag tactcgactc tcagcctgtt
      301 tgataagtat aaaggaaagt caatagaagc tatcagaact acaggtaaga aacacctcca
      361 gaaaactcct tttgatggca gagcttgttc accatgttgg ggatgcggct gggttgtgca
      421 ggtgtcttca ttaagatcaa aatctccatg gctcttttat tgtggagaca tagaggacag
      481 gacagatggg gactcttggc cctttcattt attctgcaga gtgggcaggt agcaaacatc
      541 agggccttag gctgtgccag gg
//
LOCUS       KCLJ01001583             756 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 176855cal ultra-conserved element locus
            uce-527, sequence.
ACCESSION   KCLJ01001583
VERSION     KCLJ01001583.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 756)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 756)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..756
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="176855cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>756
                     /note="ultra-conserved element locus uce-527"
BASE COUNT          221 a          129 c          132 g          274 t
ORIGIN      
        1 attttttgtt atctttgaat tgtagctcag cttttttgac attaatttta ggttttatga
       61 aaatgtgcat ttgtatgttc acatttctgc acctgtcagt tttgcatact gaagcagtta
      121 tttctttaaa cttttattta ttgcagttgt tcatttttta tgtagtatat ttttaaatgt
      181 taaagaatga cacattttgg gtaattttcc tcagtcttaa aaaaaaatca ataagccatt
      241 ttagtctcta tctatcaaag ttgtttcata cttgtctatt ttaaagcagg actgcaatac
      301 tttaatagga ttgagagagc tatttgaaat gtatgccaat gattcctgtc atttcatggc
      361 agccctgcca tggttcactg agccccctct tttctcttgt cagctcaact gaagacaagc
      421 atttagttgc aaactttaag caggttgtgc aaaacagaaa tgatgtgact gcttctcttc
      481 ctgcacaata atgtcactgc tggtcaatgt gagaaggtca ggttgctcct tgtaaagcta
      541 catgatacca cttgcctatt tgaacaagtt aagttaacca ctgaatctgg tccctgcagg
      601 cgctgaaaac tcaccctttt atcaagtctg catttcataa gaaagaagaa caattgtgga
      661 gagaggattt ctgatgatat gtttatatac tttataagga cagttcccaa accagtgttg
      721 caggtaatat atttagttta agctgaaaga caaaaa
//
LOCUS       KCLJ01001584             485 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 176934cal ultra-conserved element locus
            uce-5829, sequence.
ACCESSION   KCLJ01001584
VERSION     KCLJ01001584.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 485)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 485)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..485
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="176934cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>485
                     /note="ultra-conserved element locus uce-5829"
BASE COUNT          158 a           77 c          116 g          134 t
ORIGIN      
        1 tttttttttt caatttgtta agatgctgaa atctgctttg tgtgatttat gaaggaactt
       61 gaagcgatta gtttcacagt gcatgaaaat tcctcaggtt cagagggatg tccaatctgt
      121 tacaccgcaa gccgttgact ggatgagaac atgagcagct cggagccata aggagattgt
      181 gttgagttat taaacacttg tggtaaagct gcttattgtt aattccccaa tgtcctgctg
      241 aagtgatcgg ataagatcag atcggattag atcaaagagc ctgggaacca gcctttcgag
      301 cagattcatt taatcaataa agagggtctc caaagagaga gagaggcagt accgagagat
      361 tagagcaggg aaaataagaa acaacttaaa atgtgattct gtaagccaaa gcatgctttg
      421 tgtgtgtgtg tgtaaaaaca gccaaaaagg atataagtga aaacttcatt accaagcaga
      481 cagtt
//
LOCUS       KCLJ01001585             681 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 177036cal ultra-conserved element locus
            uce-6617, sequence.
ACCESSION   KCLJ01001585
VERSION     KCLJ01001585.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 681)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 681)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..681
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="177036cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>681
                     /note="ultra-conserved element locus uce-6617"
BASE COUNT          210 a          110 c          119 g          242 t
ORIGIN      
        1 tgcctatttt atggtttttc tttattggag cttgttattt tgtgtatgac agcagcattg
       61 tagttttcaa ataggatttt ttttaaagga tttcttgtaa cacagaagca ttgaggtgat
      121 cagaagatga attctatttt aacatccaca gactggaaga tatcaacaaa gattagctga
      181 ataaagaaat aatctatgac agtgttgaga atgattctca gaattttaaa tacttgttaa
      241 aggctttgct gtatttcact tcaataaaca tcatgctcca gttactactt gaaaccatag
      301 gggcattatc ctgtgcagca cttatcaata ttttaacacg tgaaagtcaa atgatgttga
      361 aacattgaac tatatttcca tctgtgcaag ctaaaatggt acaaatgcat cctgtgtaat
      421 ggaatactac atccccagtt actttcttac aagtgatacc tgattcctct gcattttctg
      481 tggttgtttc cattgctctg atggtgccca aaggaagact gtcttttaaa attaatgttt
      541 ataacattta aggagtttta acccaacctg ccttaaatcc agagaaacaa attcttggaa
      601 attttttctg ttgcccttca gtgataaatt tttctgcatt ttgtgtgaaa atgggattgg
      661 tacaaaaaga ccctgagatt g
//
LOCUS       KCLJ01001586             535 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 177147cal ultra-conserved element locus
            uce-1187, sequence.
ACCESSION   KCLJ01001586
VERSION     KCLJ01001586.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 535)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 535)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..535
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="177147cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>535
                     /note="ultra-conserved element locus uce-1187"
BASE COUNT          157 a          116 c          112 g          150 t
ORIGIN      
        1 tttttaaacc aatgatgctg tactattgca agtcagatta tattttattt cagaaagcgt
       61 gctagctaca taatttaaaa gtccacaaat cagttgcaat ttagtgctta ttaatccttc
      121 ttaggatgta attcggtgaa agaactgctt taaaaaaatt cttttctgta ttatagacgg
      181 atctaacaac gcagtctggg ctccgtgcca aaggctggta tttcacagca gcgaccgcct
      241 tacagatgag ctgtgggaag caggagggag actctcttag ggtgccacta ctatggagac
      301 acagctgggc tgaacaagat ttgcttcaaa cgacaacaag agagacagaa agagtctggt
      361 tcgaccgctg cccaagcagg cagtaaccag aagagctagc agccaatccg gccatgctgc
      421 actgttcgaa accagctcta catcccagcc aatcagtgac atcactggtg agaaactcat
      481 ttacatcatg ccgtaatgaa ctttgtttaa cgtagccttt tttcttttct ttttt
//
LOCUS       KCLJ01001587             463 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 177254cal ultra-conserved element locus
            uce-4421, sequence.
ACCESSION   KCLJ01001587
VERSION     KCLJ01001587.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 463)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 463)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..463
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="177254cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>463
                     /note="ultra-conserved element locus uce-4421"
BASE COUNT          148 a           84 c           83 g          148 t
ORIGIN      
        1 aagcattgct ttatgagtta tgtaaagttt atgctttttc atttatgctt tagaatttta
       61 accacattgt ctcacttatg cataatccat caacccaggt gacaaatatt cttctatatt
      121 tacacactag gaatatagaa ggagcatagt gtattagcag ctgaaactac aaacgtcact
      181 gtcaatcaaa ctggctagca taggaccata tttcttgtca ccaagaggct taaagcaaag
      241 aatctgtgcc taattctctt aaaccttgca ggtcaaaagg ttttaaaatt atttttgaca
      301 ccatttcttt gctttgtcaa caggcctgag tactttttaa catgtaaagg atatcaaaaa
      361 gctgctcatc gtaacagtct ggcattagca atttatggat ttaagagtgc acagtaattc
      421 cactggtaca acagcaggct gttctggagt gagaagatgg aga
//
LOCUS       KCLJ01001588             486 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 177361cal ultra-conserved element locus
            uce-4575, sequence.
ACCESSION   KCLJ01001588
VERSION     KCLJ01001588.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 486)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 486)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..486
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="177361cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>486
                     /note="ultra-conserved element locus uce-4575"
BASE COUNT          137 a          119 c          114 g          116 t
ORIGIN      
        1 tgcacagcaa cactcccctg cccacccacc cacgctttaa attctccccg gagccctgcc
       61 aaaaggcctg ccctgggcag cagggactcc ccagtgctgc agctcatcac caggcactca
      121 cccatgcagc ttggtcattt atccctcgtt ccctctcaga tggtaatgag tggtttgcac
      181 tgggaactaa atgaagttga ttgcccactg gtgtctgcca ttagtggtaa ttagttaaaa
      241 catcagagta taaacagtaa attggctcta ataattaata ctagcactca agcatatgag
      301 agacacagag actgggagag aatcagtggc aagcttgtaa aatcagctgg ggctgcttta
      361 attaaaaaag aaggaatgta agtagcacac tattggaaaa ggacaaaagc catcaggatc
      421 ttgcttggag tgtggttgtg tctcctctgg agtgcagcag ggctgaggat tcaccttccc
      481 tgaaat
//
LOCUS       KCLJ01001589             549 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 177466cal ultra-conserved element locus
            uce-3113, sequence.
ACCESSION   KCLJ01001589
VERSION     KCLJ01001589.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 549)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 549)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..549
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="177466cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>549
                     /note="ultra-conserved element locus uce-3113"
BASE COUNT          153 a          117 c          118 g          161 t
ORIGIN      
        1 ctgcctcgtc ctttgctttc ggcaagtttg gcgggaggat tttacctcca ggaactgctg
       61 ctttacaacc tgtagagata agacagcctc gcatcagatg atcacataga taagtaatct
      121 ctcccctcgg ccagtggtat agctgaccgt atgctcttga atcttagagc gctaagtctt
      181 tcctgtgaat gaacgagaaa acactcgaca ggtcgtgaat aatcgtttta atgagtgtgt
      241 aaaagcgtgc gacggggtgc acggagctgt cgggttaaac aaacaacttg taccctgacg
      301 aaatccgatt gttaaagtgc aaagtggtgt cagtccaatt tccatcccag ttctaaaaac
      361 cacagatcta agtcgcggga gtccaatttt ccccattaag aaaaataaca atatttttaa
      421 gtgcgatcgt agaccagttg catatcagag gtaccgaagc tattttgtta tttttaaaga
      481 cgctagtttt tgacattttc ctacatatta tcagatcaat gcggtaaata ttttcctatg
      541 tgtccgtcg
//
LOCUS       KCLJ01001590             787 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 177577cal ultra-conserved element locus
            uce-2816, sequence.
ACCESSION   KCLJ01001590
VERSION     KCLJ01001590.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 787)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 787)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..787
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="177577cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>787
                     /note="ultra-conserved element locus uce-2816"
BASE COUNT          233 a          160 c          166 g          228 t
ORIGIN      
        1 tgggaattta atgctaggtc tgcacttctg gctcaagccc agctgtctac atttggaaat
       61 gtatttgttt tggaacacaa ttttctggaa tggaatgtca agaaaatgca taatcaagag
      121 ggcatcatag ataacgagct acaaaaacct gtttgtcacc ctcctcccac aatggcgaag
      181 agccttctac agctgctaat tagaaaatta gaacaccaca aatagattat attttactgg
      241 cagcatagcg ccccccagtg ttttgaagta ctttttgaat tgtttgctgt cagcaaaaca
      301 agtgcgctac ctgcgatcct atagacaaca aagcccggca gcaagatttc agtcaggtga
      361 tgtcacccag gtaaaattgt actgacaagc ttttaattaa agttttccca cacatctttc
      421 tgctggtccc caggagctat tattcattat gtgccgactg tcagccaatt gtgagtcggg
      481 agggaagtgt tttattttca aagcccttgc tgacagctag agaacacttt gttatacaat
      541 ctgtttactt ttttcacaca cacaatcttg ctaaagggga aatggtcatg cagtagtgtt
      601 tacagtttat ggcaataatt aaatgcatct ggcagagcag tagctgaaag gaggtcggtg
      661 tgggtgtaaa agccataaaa ttcctcctat aaacagttac cttcaccttg cagagcccct
      721 agcattttaa gacaaagttt ctttgggaaa gggcaggtct aaacaggtgc acatattttg
      781 aaatggg
//
LOCUS       KCLJ01001591             661 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 177691cal ultra-conserved element locus
            uce-3469, sequence.
ACCESSION   KCLJ01001591
VERSION     KCLJ01001591.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 661)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 661)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..661
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="177691cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>661
                     /note="ultra-conserved element locus uce-3469"
BASE COUNT          224 a          117 c          102 g          218 t
ORIGIN      
        1 actgaaacat tttaattgta ttatatgtca tattaacttg cataaaatag caaagcagat
       61 aatatttcat tggagatctc tataaaatat tgagcttcct tttttaaagt tactagccta
      121 tgactgctga aataaaatct ccaagtaata acaggtaaga tttctggcct catgtatatt
      181 tccaaagtca cttactaatg gatagtaaat tgaaagttat atcttcagcc ctttataaag
      241 aaagcacctc actaatactg taatcattct gcaagcctaa caacagagga aatcatgcca
      301 taacaaatac tctgttacta atggcaacat tgatttctgc aatcagccat taagtctaga
      361 aaatgaaaga cagtttgagg taccttaagg cattacattg cccactgtta aagagctggt
      421 agcaggctgt tgagggtaat tctttttagc ccccccagtt tcgataaata ttttagtatt
      481 ggaggcaatt cactgttaca gttattaagt atatgccagt ttacttttgt tgttcttgtc
      541 atgctccagt atactctagt tctgaggcca aattaatata aaaatagtgt tagtttgctt
      601 attacaaacc agtaaagaaa ttgttaagac acataaatct gcactccaca ttccacagat
      661 t
//
LOCUS       KCLJ01001592             593 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 177802cal ultra-conserved element locus
            uce-2235, sequence.
ACCESSION   KCLJ01001592
VERSION     KCLJ01001592.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 593)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 593)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..593
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="177802cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>593
                     /note="ultra-conserved element locus uce-2235"
BASE COUNT          208 a           93 c          108 g          184 t
ORIGIN      
        1 taagccacat aatggaaagc atgtaaaact agttttaggt tgaatatagc ggtaaataat
       61 cacaccaagt actgcattag aaacaatatt cagtataaag tgtttgtata gatagcctga
      121 ttgtaaagca agattaatac gaaaggcaag aagtctgcaa taaaacctcc taacttaaat
      181 catctgcatt tgtgtacaag cattcatatt tagcaacagt cccaaggctg agattaaagc
      241 tgtttggtag gttacttcaa ggccttttta ttgctaaatc ttattatgtc tctaaaatgt
      301 agaaattaat cacctgtcat caaagctaca gtggattatt gacttctaaa tgtctctacg
      361 aagtgattca tgacagaatg aaacaggaga ctgaactagc actgaaattc tttttgcatg
      421 tgataaaaag ggtctattaa aaatgtttga acaaatgctg gctattaggt aatcatcaca
      481 aaagattttg ttatcaaaac gtggtgctcc ttgaataacc ttattcagtt acatggccct
      541 aatgtgaaga tatctggagg atttagattg ttcatctgag aagcctgaca tta
//
LOCUS       KCLJ01001593             740 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 177911cal ultra-conserved element locus
            uce-4302, sequence.
ACCESSION   KCLJ01001593
VERSION     KCLJ01001593.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 740)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 740)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..740
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="177911cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>740
                     /note="ultra-conserved element locus uce-4302"
BASE COUNT          224 a          157 c          128 g          231 t
ORIGIN      
        1 ctagtgtttt gtgttaaaat agaaagaaaa caagaatcat tcaaaaatga tgtgccaggc
       61 agcctatatt aatatttatg ttgacattaa tattgataag aatgcacctt atgctttgtt
      121 gtctatcccc agcatcctaa gtcccctgtt attcaagcta gtagccatta cctcgcatct
      181 ccctctgtac acaaagcttc aaacagcctt ggcagggctc cagctcactt acgcttaaat
      241 ggacactcaa gcttcgacgg acacacagct aaatagaggc caataattca atacagtatg
      301 actgtactgg ggcttctagt aaatccatca ggcagtaaat atcatctgaa gccaatgcaa
      361 gcttttatct ttccaatttt gtgtatgtct gtgtgaagcc caggcattca gtgaatcatg
      421 taatttattc tgcagtgcag agcctgggct gtctcagaca tcatattgac tttttttcca
      481 tctgtcaggg gcagtcactg ctacgctttt gtgcaaacgc atcacattgc atttatttat
      541 ttaagtgcaa ttgggcaagg acacattttt gcagatcaac aaatactaag aaaagcatct
      601 gaatatcatt acaacagcat gttaaacatt tgtcctaacc agtttgttaa atcagcaaat
      661 gcacttccag taaatgcttg taatggctca gaaaagactt cctaatgttt tattaagcct
      721 caaatatgcc ctgttatttt
//
LOCUS       KCLJ01001594             596 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 178019cal ultra-conserved element locus
            uce-7329, sequence.
ACCESSION   KCLJ01001594
VERSION     KCLJ01001594.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 596)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 596)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..596
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="178019cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>596
                     /note="ultra-conserved element locus uce-7329"
BASE COUNT          173 a          122 c          130 g          171 t
ORIGIN      
        1 ttctaaaacc catacagctt tcagagaaag acatgagcat gctggaggaa agaataaagc
       61 ggtcagccaa gagaccctct tctgctccag tgagacaggc agaggagaaa cctcagcgta
      121 ctcagaacat gagtgccaat gccagcatga tgcgcaaggg acaagctgag gacatgtcct
      181 ccaaactcaa gtatgtaatg tatggtctct tatgtctgag aacgtcactt cagttcttgc
      241 tttgcatgtg aaaaatggcc aaataatata aatctaaatg tctgaatgtc ttgtctgtct
      301 tgtttctaaa tggtcttgtg ccttttttca ctgcttctcc atggacagaa ttatgtatcg
      361 cacttatagg atgtaagtac tgcccactaa ctccttggta gcaaggctct tgtatcttct
      421 atccttgcca tcccttcctg agggtgatgg gtttgccatg gctatctaga ttttttgatc
      481 aggctgcaga cttaagcaac tgttaaaatt attgggagaa ggaccatgtt ctagttgtat
      541 tagacattaa gcataaaaag catgtgtgaa ttgtagagcc taaacaaaaa gcccag
//
LOCUS       KCLJ01001595             359 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 178130cal ultra-conserved element locus
            uce-5193, sequence.
ACCESSION   KCLJ01001595
VERSION     KCLJ01001595.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 359)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 359)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..359
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="178130cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>359
                     /note="ultra-conserved element locus uce-5193"
BASE COUNT          102 a           71 c          113 g           73 t
ORIGIN      
        1 aaatgtgtag tgataggaga tgttgtggtc cttacacagc tagcagggag tggagcagga
       61 gagaggacag tgctgtacag ctgcagggct gctcacaaca gggcagagct cccagagaat
      121 gtgctctttg ttccctgcct ttaaagggta agagaaacac ttatgcatgg caaattagcc
      181 caaaaatgta tttctctaaa acacccgatt gtctggccag ctctgcagct gcagggaagt
      241 tccagggaga gaagggggag gcggcaggga ggcagggaag gaggatattg atggcttgat
      301 tgtgcgaacg agggagaaat tctcatgcca ccattcaaac agagctgacc agtgagcca
//
LOCUS       KCLJ01001596             498 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 178243cal ultra-conserved element locus
            uce-5730, sequence.
ACCESSION   KCLJ01001596
VERSION     KCLJ01001596.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 498)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 498)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..498
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="178243cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>498
                     /note="ultra-conserved element locus uce-5730"
BASE COUNT          148 a          120 c           93 g          137 t
ORIGIN      
        1 caagacaatt gttaacaagg cagtcttgtc ttacatttga cagtttcagc tcctggcaca
       61 ctaagctctt gtttgataag ctacattcat tccatatttg tgtaataccc tggaagaaat
      121 taggttgcaa tgaagtccat ttttgtcact gcatgtagca atgaatatca cacccagcag
      181 ggtacagtgg cacctggctg tccagaccca gtgtagcaca aagccatctg ggggtaatta
      241 caacaaggta ttctttaaag accagatggg accaaggaac agaagcccct acccctccca
      301 gtcatttaca acataattcc tttcaatgat atacttaatc ctcccaccag ctacgctttt
      361 cagcttgctg ttgtcactgt tcctttatgt taattcactt gagagacaca gaaaggagag
      421 cgagccaccg gtgcctcaag gggctaaaag aaattattca tccttaaatt gtttccacta
      481 caccaagtac agtaacag
//
LOCUS       KCLJ01001597             699 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 178351cal ultra-conserved element locus
            uce-7510, sequence.
ACCESSION   KCLJ01001597
VERSION     KCLJ01001597.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 699)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 699)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..699
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="178351cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>699
                     /note="ultra-conserved element locus uce-7510"
BASE COUNT          232 a          155 c          113 g          199 t
ORIGIN      
        1 ctctcaagta gcaagtgtag catacacaac agtctcaatg agagaggcaa ttaacaaaaa
       61 ataattatat ataaagatgg tttgaaagac aatactctat ctaaaatgac ctcactgtat
      121 tcacagcact gataaaacag ttttccttta aaaaatgccg ctttttttat tcatcaaaag
      181 agaaaagccc caaggtcacc tgtcaataac agaacaaacc ctcagtaaat cacagtgctt
      241 cacaaataaa ttcctcatca gtaattaaaa ccaggcctct ctggccctgt gttatcagct
      301 catcaaattc attgctcatc tagaataaca gatccacatc tgcagtcatt acagcatgcc
      361 agataaatca atcctctcaa tgatgctttg agccatctct gctccctttt aaccagcccg
      421 atatttattt ccccctgaca cttctgacat tctatttact gtaggcaaat ggaactcata
      481 cggcaccttg taatggcttt accaaacccc attgtggggc atatcttcca agactgatgg
      541 gtgcaataaa caaggtttta tggtgtaagt gtgagcttcc ccaggaattt gacttctgca
      601 gtgaagatgg tttattacat ttgattgcag gtggaaaaag ctatatccac tttgagacct
      661 gtcagctaaa agcaagcaga aaacttgtga aataatatt
//
LOCUS       KCLJ01001598             587 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 178462cal ultra-conserved element locus
            uce-7774, sequence.
ACCESSION   KCLJ01001598
VERSION     KCLJ01001598.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 587)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 587)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..587
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="178462cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>587
                     /note="ultra-conserved element locus uce-7774"
BASE COUNT          151 a          138 c          110 g          188 t
ORIGIN      
        1 ttttcattgc tttcctgggc tcttccatgt tgctgcctca aactggaagt ggctgtcagg
       61 tgagataaga aatgcgcgtg gggctttccc ctaaacgccc cctcaatctt cagcataatc
      121 ttggatcccc ccacaaacac tgctaactac taactcataa aacatatcag ctgggtttat
      181 tacttttaac catctttcca attgtgctat aaaataaagg cagatgccat tttaagatct
      241 tattattatc aagggccaac tcctccagca gcacctgctt agcagcaatc tgcttgttta
      301 tagtcccttt tttataggtg acagtttaag gtggctgttc tcctgttaca aagagttctt
      361 tttaatgtgg cagaagtggc acgcacagta ggtgagctcc tttctttcat ccagtgatat
      421 tgagacaggg tcgcaggttc acctgtgatt tttgcttgac agcttcgcca cacacatcag
      481 gctctgccaa atgctccgcc attaatttat gatttaaagt aattaacttt tgctgattaa
      541 agtaattatt tcaagtgcat tgcactcagg cccaaatgat gctcaca
//
LOCUS       KCLJ01001599             673 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 178574cal ultra-conserved element locus
            uce-5349, sequence.
ACCESSION   KCLJ01001599
VERSION     KCLJ01001599.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 673)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 673)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..673
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="178574cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>673
                     /note="ultra-conserved element locus uce-5349"
BASE COUNT          213 a          133 c          133 g          194 t
ORIGIN      
        1 taatttgtgt aagtgaaatt attttctaag ttaaacaact cattacctct cagcagacca
       61 tatgaactga gaaataaaca cctcctggat tcccatcaac ccacaacatg ggtagagcta
      121 atctaaaata ttactaaagt caagtgttgc ttttcatttt gttcagttga atatctatat
      181 ttggttgggg gtaaggggga gatgagggaa aggtctcagt gaccagctca gataatatac
      241 ttatgaagct atgcctggaa ttccttcgtt ggtacctatg acactatcaa attcattgga
      301 aagagtttat cgcaaagtta aatgtcagca gctgcaagcc tttaaatgga acatacttca
      361 gctcctgggc aatggcagcg atctgttcca ccctgtcctg gtgagcagcc aaatcgctct
      421 caaaagcttc atgtttcctt aacatggcac ggacttctgt cagagaggca gactcgtaat
      481 ccttctgaag caaggtctgc tctttgcctg aaagaggaaa taaatttatt tgttagaaaa
      541 ttgtaaattt aatcaatgaa atcccctccc actgaaatca gcagcaaatt gtcagcttaa
      601 aacatatttt aaagctctgc ataggcagca tatacaggtc taaaatagtg agtacattgc
      661 aggagaaact ggc
//
LOCUS       KCLJ01001600             361 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 178682cal ultra-conserved element locus
            uce-4594, sequence.
ACCESSION   KCLJ01001600
VERSION     KCLJ01001600.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 361)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 361)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..361
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="178682cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>361
                     /note="ultra-conserved element locus uce-4594"
BASE COUNT          118 a           61 c           59 g          123 t
ORIGIN      
        1 aaaaatatgt ttgtttttac tgcctaataa ttcacagctt tgaggagaag ctaatatcct
       61 ttaagtaaaa gactaatatc tatctctgga agtgcttttt ttgacccatc tggtttgtca
      121 gaaaagtctc ctacctctga tatttataca atatcatgca aatgtcaaaa tctgaatgtc
      181 atcttcaaag acccttttat gtcaggcaac ccctttatag ggaaaaaata aacaatttta
      241 tgtatggatg ccagtccaat taataaaagc cttttttgct atgcttggct acaagcaagt
      301 ttctcttttg aaaatgaaca gagggagaat gagataaaag gtctgtattg tttccttgca
      361 a
//
LOCUS       KCLJ01001601             521 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 178787cal ultra-conserved element locus
            uce-1675, sequence.
ACCESSION   KCLJ01001601
VERSION     KCLJ01001601.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 521)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 521)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..521
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="178787cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>521
                     /note="ultra-conserved element locus uce-1675"
BASE COUNT          162 a           94 c          108 g          157 t
ORIGIN      
        1 aggggaaacc cacgagggac ttccctggga atgaaaagag acacagaaag gttactacat
       61 gtatcctaga gtctggtaca taattccacc gttaaaactt taatttatga aaaaaatgct
      121 ggtgcggtcc ccaaatggtt aaattccact cgaacttttc attttagtta gtcatgaata
      181 tatctaacat acagaggcca tcagcatctc gccactagag actataaagt ctacttacat
      241 agggttcctg ggatttttca tgttcttatg gaaaatatct ctgaaatccc cgagctgaaa
      301 attttgatct catttgtgga tgtgagtgat gctgagaaag ggttgaagag tgaagagaac
      361 acttttctcg cataatttca tttgtcagga gaatcttgcc gctgacattg gaagagtgat
      421 ttaattgatt ttaatcatac acctgagatt gggaaattga gccctctgtc ctgaaaaata
      481 attctaggct tccctgagaa tgtctaattt gcagctaata g
//
LOCUS       KCLJ01001602             629 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 178895cal ultra-conserved element locus
            uce-291, sequence.
ACCESSION   KCLJ01001602
VERSION     KCLJ01001602.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 629)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 629)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..629
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="178895cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>629
                     /note="ultra-conserved element locus uce-291"
BASE COUNT          174 a          129 c          124 g          202 t
ORIGIN      
        1 ccaacgccga aattcctcgc agctctccag gcctgatgga gacacataat gaaatacaat
       61 cctgtcaagc tcagcccctg ggtaacattt tcacttctac attccatttt cagtttaggt
      121 cgagattttt aagaagacag caagcagcac tccagtccca ggtgacaaga tctgctcaga
      181 tttagtcttt gaatgttgca aattaaattc cctcatcagg cctctaatca ctcttaccag
      241 atggggcttg tgctcaattt tggatccaca ggaaatttaa tggttattgt ttctgtttaa
      301 ataggagatt attgcatttt aataagttct ctttgggact tgcagcaaca atagagcact
      361 atgaattact gtagatagct gttactgcat gctggggaaa aatcaagtta ctaagtgtga
      421 caagttgctt tttcttccct tccagcaatc gctcggagtg tatttaccac caaattaagt
      481 atgtgccgtg gggataatat ttttatcctg ccgagggggg aaggcgcttg tctgtggatt
      541 ttcattaaaa tgacacatct gttcagcaat ttcacaaagt aattctgctg aaagttttat
      601 cagctaattt taattattca ctccagtgg
//
LOCUS       KCLJ01001603             672 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 179007cal ultra-conserved element locus
            uce-7249, sequence.
ACCESSION   KCLJ01001603
VERSION     KCLJ01001603.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 672)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 672)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..672
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="179007cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>672
                     /note="ultra-conserved element locus uce-7249"
BASE COUNT          234 a          138 c           93 g          207 t
ORIGIN      
        1 atgtcagaga taattatttt ttcatctaaa atgagtcaca ttgctatatt catagaaaca
       61 gactagaaaa tgctacatta gtcctagtct gatgtcttat ctaattgacc tctaaagtga
      121 catcttccat cacacagact aacctgtgct atttatttcc atcttaccta aaattatgat
      181 gaatggtttg agctctattc aattattgaa aatgtgcaaa gaaacagaaa caatgaaact
      241 ggcaaagtgc tctgcattct taggaacaat ttaggctaat tagcatcaac ttctccccca
      301 ttcatcatac ccctttagaa atataaacaa actgtcagct ctaacctaac aaacagatca
      361 ctgagctact taacacaaat tattcttaca tgaaaagctc cttctcaggc aatattctcc
      421 tctagggcat ctgggaagtt gagctattaa aattgaagac atatgtttca gtcaaattta
      481 actcccagat tgtactgatc gctgttgtga cagttttcca tcagcagctg gcaaagtact
      541 tcatatttta aacaaaacaa tgcaacaata gacttcaatg atgcatgttc atttagtata
      601 aaatcaatac tacccaatta gcaccctaca cctagaaacg gagctactta aaattattgc
      661 ttaggtagaa ct
//
LOCUS       KCLJ01001604             638 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 179116cal ultra-conserved element locus
            uce-1520, sequence.
ACCESSION   KCLJ01001604
VERSION     KCLJ01001604.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 638)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 638)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..638
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="179116cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>638
                     /note="ultra-conserved element locus uce-1520"
BASE COUNT          221 a          106 c          112 g          199 t
ORIGIN      
        1 agacccctcc agtggattca aattatatat acagacttta tatttttgtc attttcaatg
       61 tgcttcaaac aatgattcat aggtaaaatt aaaatacatt ttcataaaaa gggcacaaat
      121 tattgataaa cacatctatg tttgcagatt ggttatttct cagaggttat ttggggtcat
      181 aattgtaaat ctcattacct tgcttgaagg agaaggtctc tttcattatt acggtgctga
      241 ggtccatatc cctgaagcta attgcaaggt attgcttcag agttctaatt gtttgccatc
      301 aaaatagctg tgtaagcttg attaacagtg ttcagcaaca ttcataatag tccaagcctg
      361 gtcctgcata aaatagaaac tgggaaaaaa tcaataagat ttaataagat caggaacaat
      421 cacttacaat agtacatcaa tcacacaaag taataggtgc aggatttgat agggtcctga
      481 actgcctgag agattcataa ccagtactcg ttaatgattt gttcatttgc attttatcaa
      541 tccagctaca gctgacaagc agaaggagca gtaaggaaat atgttgactt aaactcatca
      601 gagtttgcaa ttcagataac ttaatagaaa aatcagac
//
LOCUS       KCLJ01001605             696 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 179225cal ultra-conserved element locus
            uce-1410, sequence.
ACCESSION   KCLJ01001605
VERSION     KCLJ01001605.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 696)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 696)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..696
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="179225cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>696
                     /note="ultra-conserved element locus uce-1410"
BASE COUNT          213 a          154 c          122 g          207 t
ORIGIN      
        1 aacatcacat taactcagtc ttttttggtt aaaatactga cctgaattta atgttttagc
       61 atgttacaac tcataaaaga atatctgact ttataaacct actcaaagcc ttttactgaa
      121 gagggaattc ttggtttctg tgaaattgat agatttaatg aatatattcc tgttataata
      181 tgacatctca tttttctttc tcataaatac ttgtcaggtt tatgattttt cactcattgg
      241 ccaggaattg tgttgcacaa gctcagattg tgggtgctca taccaagttt aatttcactc
      301 acaagtagag ttgacaaaag atcacagtca ctaagccctg gaattaccct agatattgcc
      361 ctctgtgctc tgcaaatgaa atcctacaga agaccctttg gaaaagaaga acgtgatggt
      421 taactctcag aaatccattt tgcacagggc agtgtcagta cacagagaag cactgaatga
      481 caggcagatc tgccagttcc tggatgagca aagtcagatg ctcagcatta cactctctct
      541 gtctgcctgt ctcgggctgt tcctttccca ctttcccttg ttcctctctc atgcccttac
      601 caggtcagat aagaaattaa gaacagtgaa atcagaacca gaccgcacct gtccccagca
      661 cagccagaac agaactgaaa taaagcactt acgaaa
//
LOCUS       KCLJ01001606             732 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 179335cal ultra-conserved element locus
            uce-7503, sequence.
ACCESSION   KCLJ01001606
VERSION     KCLJ01001606.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 732)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 732)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..732
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="179335cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>732
                     /note="ultra-conserved element locus uce-7503"
BASE COUNT          224 a          145 c          120 g          243 t
ORIGIN      
        1 acagtattta tttaaggcat caaataacgt tttgctgttg ttttaaatag cttcacaaat
       61 tgaaggaagc atttaaaagg aaggtgataa tgtttcccta ttcttgcttc aggcacataa
      121 atgttatttc ctctgaaatg tcatgtattg accatctgaa tcttgataaa tcacaagata
      181 gattgcagtg gagctctatg tatttaagta tcaagctgat ccataacttt cacagcaacc
      241 aaaagccatt gcttgtcact gctgtccaga atatatcctg acagttcagt gggagtttca
      301 gtgccattta ttttcaaatc aatactcaat tactaagagg aagattcact cccttgccca
      361 ttttcaagat gaaattatgg actagagcaa taacacttag tcaaggcaag ccactgtcca
      421 ttaactcatg atgctcccaa aaagccatcc agacacttta ttaaagctca gtcttttttc
      481 agcttttaat taatcattgt gaaaaaggcc tttcacattg tgactgatga ccagagaaaa
      541 caattttctc ctaactgcct tttaatttca actctgggag tgctcattga ctgaatctca
      601 caacaaccca tcaatgctag tttttaatgt gttttctcct ttgttattga gaagaatgga
      661 gtggcaatga ggctttgtgc tcctcttcat aactcaagta attgattcag taaatgcctc
      721 acatttgcta gt
//
LOCUS       KCLJ01001607             599 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 179447cal ultra-conserved element locus
            uce-3129, sequence.
ACCESSION   KCLJ01001607
VERSION     KCLJ01001607.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 599)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 599)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..599
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="179447cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>599
                     /note="ultra-conserved element locus uce-3129"
BASE COUNT          176 a          119 c          135 g          169 t
ORIGIN      
        1 atgaaattga atagttgtaa gcgatccttt aagtgtcccc atttgaccaa ctttgagagg
       61 cagcagcttc ctgagagagt tgaagcaatg tttgccaatc cttgtaaagc atttcacctc
      121 ttcagaggct aaagcctctc aaaaccaaga acaattaaag cgagagcctt tcagagcgac
      181 tggggaattc agcaaaataa atcagaaatc ctctgccgtg gctctggagg cttgcctcat
      241 tataagagca gatctattag cccccttgcc attgtctttc atttctcaag tgaggtgatt
      301 ctaattaaat taatctgcat gtcaatctat cggtgatcaa tcaaaagggc tgaggtcccc
      361 ctttgcggca ctgtgcttgc ggctgacagg ggctgataat ggaggaagaa ataaactgtc
      421 gagcaaagtt aattagtcaa cataataggt ggattaaaca ggagctgctg attgctgttt
      481 cacatgtcga agcatgaggt gggagctgaa actgcaatta acagacaatt actatatttg
      541 gttgtaagag gtcgcatgaa taaacatatc tctgtgggtt tcagtcttta atccctttc
//
LOCUS       KCLJ01001608             716 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 179557cal ultra-conserved element locus
            uce-5694, sequence.
ACCESSION   KCLJ01001608
VERSION     KCLJ01001608.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 716)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 716)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..716
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="179557cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>716
                     /note="ultra-conserved element locus uce-5694"
BASE COUNT          217 a          169 c          137 g          193 t
ORIGIN      
        1 tcctgctcag atccctctcg aaaaactgtc ctcccctcag cagtgtcaca gagtccaccc
       61 ttgtcacagc ccacaaacct gcacatctca gctgggcagc ctttggaagc agacaggaaa
      121 taaaaggata ataaaaacac caagaggact acaggatcct gctccagtcc tgctgaaatt
      181 tgttcttaaa ggtgcaggtc ctgtaagatc ttttcagaat aactgacaag aacaaagccc
      241 acaattatta acctttccac ttgttcccat agtttattgt gacaagacaa tgcaataagc
      301 ttgaaggtaa tcaaaaagca attttgtagt agtgagctta aaatgacaaa cctttccttt
      361 tctaaataaa tcaccattat tcccacatgg tccatacttg acaagtttgt ttccttagta
      421 acagagtact taaacagggt ttgtgtgcca agattatacc tttagccaca gaagtgaaag
      481 aggagacaat aggacaaaaa ttggtccacc cacctgagtg tgtgattcca atgtttagaa
      541 cccaaggctg tgcagaagcc cagggatgcc tcttcccccc ctgcattttg aggactttct
      601 ggagtgtgtg gactcagagg ggttttcaac ctacagcgcc caaactgaat gtaacactcc
      661 ctgatgtttg ttcaatagct cacctaatgt tgaggtcagc tgtcttataa attatt
//
LOCUS       KCLJ01001609             685 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 179771cal ultra-conserved element locus
            uce-114, sequence.
ACCESSION   KCLJ01001609
VERSION     KCLJ01001609.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 685)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 685)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..685
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="179771cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>685
                     /note="ultra-conserved element locus uce-114"
BASE COUNT          179 a          138 c          141 g          227 t
ORIGIN      
        1 tcgatcaacg ggagaacact gtatttgtaa taaattcctt ttgctctgga tgagttctgc
       61 attttcaatg aggttaactt ggcaacattc tagttgattt taataaaaat agctgctttg
      121 aggacaggga gctgaggttg ccaaatttac aactgccttg cacaattact cttacacctc
      181 cttcagggct acttagaacc agtaagcaaa ttaagtgtat cgattgcaat tttgttggac
      241 taaccctttt ttcttaagga ataaacttga ttcctttcag tatgtgtctg ctcagagtga
      301 tctcttttct tttcagccat aacacaaaga caacatcatg gctggatcca cgacttgcga
      361 aaaaggctaa acctccagaa gagtgcaaag aaaatggtag gtgattaagt tttccttgct
      421 tctcagaggg gattttcctt tctctttcag ttcttacaaa aatcaggcat ttgggggaat
      481 gatgaaaggt gtttaattgc tgctttggtt agaagccata agtgatacca gttctcagtg
      541 tgccatgtgt ttctgctttt tattcccctt tctgatgcta tccaaagctg aggatcacaa
      601 gtgtgttttc tgcctgttgt gtgtgtgact ccgggactga ccctctccct catctcctac
      661 agagaacttt ggtctgcaga acaga
//
LOCUS       KCLJ01001610             838 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 179879cal ultra-conserved element locus
            uce-4843, sequence.
ACCESSION   KCLJ01001610
VERSION     KCLJ01001610.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 838)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 838)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..838
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="179879cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>838
                     /note="ultra-conserved element locus uce-4843"
BASE COUNT          227 a          184 c          186 g          241 t
ORIGIN      
        1 agctttatga cagtaaatgt ccctctttca gtggctatgc agtatatttt atatagtctt
       61 tagttgctcc agaaatcaaa atatgagaac tctcgttttg acaaaagtgg tgcagcatta
      121 atgctccagt gcatcccaaa gcgcaggact taatgaggta gttataggcc ttttagggaa
      181 aatgtctgaa attacacttc aagattttaa attctctacg cagagctgca agatatagac
      241 tctctaaata ggctacattt aagtattgtg tacttcccat tagaattggg agttgcagcc
      301 tctgcacagc aacttgacaa atattatcgt gaactactaa ggcagtgtga caaccgcatg
      361 ctgagagcaa agtctcacta atgtgttttg gcatgcaggt ttgtaatcac acatttacat
      421 atgcaatgac ctacatttgc atgtcagatc acacactgtc ttgctttatt aagaccgggc
      481 acctccctgt gcttggcggc cagagtggcg agagagggcc agagggccgt gttttttggc
      541 agttgaggga tgaactgcca ccaaggatta ggctgatatg gcctgagcat tagacacttc
      601 attagaggta atctgtttaa cagtgggcag tgtatgtaaa cttcacagcc catttgcggc
      661 accttttccc ccccatggcc cttcttcaaa gggcagcgtg gctgagtgac agcttgtctc
      721 atctgctccc ttgtcctgtc acacaattta gatgtggaga tctgacatga gaagcaacat
      781 agctgcacat ctccaactac cattgggtct ctcctcaaca caatgcaatt tgtgggaa
//
LOCUS       KCLJ01001611             776 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 179988cal ultra-conserved element locus
            uce-5077, sequence.
ACCESSION   KCLJ01001611
VERSION     KCLJ01001611.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 776)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 776)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..776
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="179988cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>776
                     /note="ultra-conserved element locus uce-5077"
BASE COUNT          268 a          190 c          124 g          194 t
ORIGIN      
        1 agagccttaa taaagcatgc atcacccata cccctgtata agaccccctg caagagaagg
       61 tcacttgcat aaggcaccat tattaaggtc aacagtgcat taacagctag aaaaccagaa
      121 gttagtcctc aaggcataaa taagagaaaa attagctgca tgagaaaaat cagtttctaa
      181 ccaatagtgg ttttatccac ccaacaaaaa aattattcat gttccataca ttatgtaaca
      241 ttagaccaat tgtattttag ctgctcttaa ctggaatcaa aactgcagtc ctgattaaag
      301 aatggaaaag catatagttc cccagaacca tgcaataacc tttgtattat aatgaaaagt
      361 tatagttgtg ttacattgta aatacacagc ttatacaatg gattacaaat gagctctgta
      421 gcaagtaaaa caagctactt gacacattgc acgtttaata gctgcaccag acacctaaag
      481 ctcctctcac acaggaacgg ggagttcccc atttccattc tggcatcctg actccccccc
      541 tttccccctc tcaggtaaaa aggtgcagac atccccccac cccttggaaa tgattggtgg
      601 tcgtcccatc tcacgagata ttcctcacat acaagacatt cagactatct tacagttata
      661 aaacaaccac aagaaaaaaa atgtgcctca gcatacagtc atcaagagat cctcatcgca
      721 tacagtcgcc caatcattaa cattctcagt gcacatgctc acggcaaagg cttagg
//
LOCUS       KCLJ01001612             280 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 180098cal ultra-conserved element locus
            uce-3561, sequence.
ACCESSION   KCLJ01001612
VERSION     KCLJ01001612.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 280)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 280)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..280
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="180098cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>280
                     /note="ultra-conserved element locus uce-3561"
BASE COUNT           75 a           56 c           72 g           77 t
ORIGIN      
        1 ttttcctttt catcttggct ttctgttgca gaatgcaaat gtagcctgcc ggcggtgaat
       61 gggctgaatt gtgattaaga agaagaagag ctcctttctt tgttctcccc tcaggggatg
      121 tttactggga gagacacagc ggatcagata tgaaaggcat tcaggtcagc attgatgtga
      181 gcgaaagtga aatcatacct aaggcattca aaagaccgcc gtgtcagggg ttcagctaac
      241 ggtgcatcta ctgtgtcttc cctgttaggc acaaaaaaaa
//
LOCUS       KCLJ01001613             623 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 180202cal ultra-conserved element locus
            uce-7120, sequence.
ACCESSION   KCLJ01001613
VERSION     KCLJ01001613.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 623)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 623)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..623
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="180202cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>623
                     /note="ultra-conserved element locus uce-7120"
BASE COUNT          147 a          181 c          183 g          112 t
ORIGIN      
        1 agcccaagag cagagggcct gggaggtttt atttgcctcc cccggagcac caggagcagc
       61 cctgggaagg cacagcagca ggagaagggc ccctctccca cagcacagcc agggagccca
      121 gacaggaggt gaggctcggc agcagcagct ctgccaactc aaggaaacgt cagggtctgg
      181 agaatttcct cacgtgtttc caatgtgttt tttatgcatt ttattgctca tctgccatgc
      241 agatcaaaaa cgctggaggg attccaacta tttcacacag aatctcacac tccaggctgg
      301 caaagcctga gtttcttcac ttgaaatact gcccagtgtt attttgggat gtgacctgat
      361 agcggaagcc cacggggacc cggggaggga gcggttccag ctgtgaagga tgcccgagcc
      421 gggccggtgc cagcggggct gtcagcgctg ctgacgagca ggaaccagca cctcacgcca
      481 cagcaaaccg ctgccacggc gaccggggca gctcagccct gcacagaccc tgcgagtccc
      541 ggcgtggcag cacaagcacc gggcttgtgc tggaaacagt tttatctggc agcaggaacc
      601 agcagctcat ctgttaaaca aac
//
LOCUS       KCLJ01001614             792 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 180308cal ultra-conserved element locus
            uce-5994, sequence.
ACCESSION   KCLJ01001614
VERSION     KCLJ01001614.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 792)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 792)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..792
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="180308cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>792
                     /note="ultra-conserved element locus uce-5994"
BASE COUNT          222 a          158 c          151 g          261 t
ORIGIN      
        1 aaacctgatt aacaaattat tttccactga catcacttct ttattctatt tacaagctaa
       61 ataggccaga cactcaattg ataaatgctc atttccctcc atcttaatta actattcttt
      121 tacttaaaca atccctcatt tttccagaga cacagtaata gatccattag agggtctatc
      181 tgataccagg gatattttat ttatgaggac aagtccaaat ggttactagt ttttattttc
      241 cttgatactg tacaccgtgt aatggctttg gtccaaacag taatcacacg atgggtgccg
      301 tttcttcttt cttgacctat cacactccac atgatttaat ccattgtttt ggatgttgcc
      361 aatgatttat tgtatgaaaa atgtaaatga tctggatggc agatgtttta tattttctga
      421 ccattcattt tcagtgggaa tgtaattaaa atttatgaag tgtatctgct gaattgcatt
      481 ggcaattgat gatctcctcc agtgctgtct gtctggagat gatgagtgat tgtggacagt
      541 gagatgtgtt gacaagggca gaaacagacg tgatgttact gtcatgagtg aggctacctg
      601 caaaaggctg ccgttttttt cccacaggaa gaaggtggca accagagctg tctttcttct
      661 tgcaagacag agtacaaagc ctctgcacac tcctgaaagc tgtcactctt cacgagtaca
      721 atctctgtct cgctcagcaa tgggcatctg gaagccacga tatcagttat aacagcccat
      781 gtcaaggata tt
//
LOCUS       KCLJ01001615             679 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 180421cal ultra-conserved element locus
            uce-2851, sequence.
ACCESSION   KCLJ01001615
VERSION     KCLJ01001615.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 679)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 679)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..679
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="180421cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>679
                     /note="ultra-conserved element locus uce-2851"
BASE COUNT          177 a          136 c          173 g          193 t
ORIGIN      
        1 ccctgcaggt gagggtgggg aagcagcgct tcccagagga gagagctcac ctggagctgt
       61 gctgtgggct gtgcaggggg agggaggggc actgagggaa ttccagctcc ccagaaaaga
      121 ttaaaaggct agtagtactt tagaattttg gaaggtagaa cttgacaaat tagtgcagat
      181 ctttaatctc tctttttctt ttcttacagc aagcaaggat ttggcacaga catcctattt
      241 catggctacc aacaggttgt tatcctgaac ctctttgttg cactgttgta gcacactata
      301 gcttccttta ctgcagggcc ccctgatgtg tcttaccctt gttgcagtgg gggactgggc
      361 cacctccagt ggtggtacct ccccgcctgc agtgcggtgt attggacaag ggcctgatgg
      421 cacaaagggc ttaaatgcac aatgagaagt gtagtggtgc tttctgatga ctttttctcg
      481 attgtgagtg cataagaaaa ttggtagcct gaatagcagc taaagattac aaagagataa
      541 acttaaccta gaaatccgag catcttggta agtacaaaac tatttttagt ttacacttgt
      601 agttaatggc agttttagtc ttaacttaat tctagtgggc ctaagatact ttcaagatag
      661 actagtacta gcccaatgt
//
LOCUS       KCLJ01001616             452 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 180530cal ultra-conserved element locus
            uce-2217, sequence.
ACCESSION   KCLJ01001616
VERSION     KCLJ01001616.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 452)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 452)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..452
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="180530cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>452
                     /note="ultra-conserved element locus uce-2217"
BASE COUNT          135 a           69 c          108 g          140 t
ORIGIN      
        1 ttgttttctt taggtggagg gcaaaggaaa tggaataaag acggttatag tcaacatggt
       61 tgacgttgca aaggcgctta atcggcctcc aacgtgtaag tagtaaatgc ttttctgttt
      121 tagtaaagca aaaatgtgat tatctcagga ttaaataaaa cagtagcttg aagatatgaa
      181 tagatcctac caaatttttt ggttgtgagc tgggagcaca gacccagttt gatgttaaga
      241 atgaccgtta cattgtcaat ggatctcatg aggcgaataa gctgcaagac atgttggatg
      301 gattcattaa aaaatttgtt ctctgtcctg agtgtgagaa tcctgaaact gatctggtga
      361 gtgctcttag acgtttgtgg tgcaaagtta aaagatttct tgcaccctct gggaagtcag
      421 cagttcataa cttctgggat aaactgctac tt
//
LOCUS       KCLJ01001617             520 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 180636cal ultra-conserved element locus
            uce-2118, sequence.
ACCESSION   KCLJ01001617
VERSION     KCLJ01001617.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 520)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 520)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..520
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="180636cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>520
                     /note="ultra-conserved element locus uce-2118"
BASE COUNT          161 a           94 c           88 g          177 t
ORIGIN      
        1 taaaatcaac atggctggtc tgtgttattt aattattgtc taggctcaaa gatcaccctt
       61 ttcttttctt taatttgaaa aaagaaaatg gattaacaaa aatattaaac agcaagactg
      121 tggaacataa aggccatcgg ttgcattttg cacaggatag gttctggttg aatgagatct
      181 gggatgtgtg ccaaattaat agaaaaaatc ctgttcttcc tctccaatag ccacaatgtt
      241 cattattaag aaaagcatat gaaccgcagg atttgatttt aataacacca atgtcttcat
      301 taatctgtac tttccattta gcctcattat taagtaaatg ctgagttaat gcagcaccta
      361 ttattgttgg attttccatg aaaaacctcc tttttttcta attcattcaa ggactatcag
      421 gtgtgtgtgt catgttttta aacaggccat cctctgtcaa tggctgtttt cttccctcag
      481 gtctatgcag ctactccagt aacgtgaaga gttacaaaaa
//
LOCUS       KCLJ01001618             404 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 180746cal ultra-conserved element locus
            uce-730, sequence.
ACCESSION   KCLJ01001618
VERSION     KCLJ01001618.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 404)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 404)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..404
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="180746cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>404
                     /note="ultra-conserved element locus uce-730"
BASE COUNT          162 a           77 c           44 g          121 t
ORIGIN      
        1 tcaaatctct aaagccatgt aaaacccgaa ggcattaaaa tttattaaat gatgcaataa
       61 caacagaatt ctttatttac aatagcatta tttaacatca aataagcaaa tagcatcagc
      121 aaagcaatat taacttgcat aaatgtattt aaaatttctc tgaatatatc tacctttgca
      181 taaactgcta acactagaaa tacaaacatc aatgcaggtg aacaaagtga tgttcagagt
      241 caactccgtt ttgaaaataa atcacaacct gaaacactgt aagctttctc ctgaagaacc
      301 atagtttata tattgcttaa ttttaccctt gtataatctt ttcatataca cacatctcag
      361 atgcaacttc atgatgaact gtacaaataa aacccacaaa tgac
//
LOCUS       KCLJ01001619             627 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 180943cal ultra-conserved element locus
            uce-2820, sequence.
ACCESSION   KCLJ01001619
VERSION     KCLJ01001619.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 627)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 627)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..627
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="180943cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>627
                     /note="ultra-conserved element locus uce-2820"
BASE COUNT          200 a          113 c          132 g          182 t
ORIGIN      
        1 tctttctcag tttataaata ttgtgtgcta gtttgggaga ataggttaga accgaccaaa
       61 gtctcggtct ctgtgctagt caagccagga gaggaaattt gaatatggaa aattaagtga
      121 atattcccca gatgaaactg tctcccaatc ataagtcatg tgataataaa tttcagttga
      181 gtgacaacaa tattaacaaa ctgaaaaaaa gattgatgtg catcacaggc ccatgaatgc
      241 aaaataaaag ggaaaggctt gctagtctgt gataggcaaa gtataaatat gtatcacttg
      301 gttctaaagt gagttatgat tacattttcc tacttgtacc tgaaatctgt agaggttatt
      361 catcttatcc ctgtatcagc catgacagtt atggccctgc gctgcatacc agatacctgc
      421 tcagcagata aatcagcagc catgaaggga cctgttgtta tcaatttgat ctccagaata
      481 aatatacaaa tatgtgtaca gcattgttgt cactgagaac aatttccctt cttctcgccg
      541 atacatttta gaggttgttc caagagccac tttctgacaa tgccagaggg aaacagaggg
      601 ggcaggagga ctagatttat ggactgt
//
LOCUS       KCLJ01001620             600 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 181051cal ultra-conserved element locus
            uce-4900, sequence.
ACCESSION   KCLJ01001620
VERSION     KCLJ01001620.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 600)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 600)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..600
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="181051cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>600
                     /note="ultra-conserved element locus uce-4900"
BASE COUNT          218 a           93 c           97 g          192 t
ORIGIN      
        1 aattatttga tgatagaact gaaaaggaag atccaaacaa acccagaaaa caaaagcaca
       61 agagaaaatg gccttgctat acatatttaa tgaaacagtg aaaatatcct gcacaaagag
      121 agttaaattg aaaatgtgtg tatgataaat ggatataata ctgtctatgt aatgggtttc
      181 ctatttaaat tttgtgagga tttaatcagt tgggcacagc tgtgcaggat gcaccataaa
      241 ctacgttgaa aaatatgtag acatgtacat ttatctgcta caaattaagc tcacttagag
      301 gtggtcttaa tggaccatgt agcaatcatt acaagcataa attttaaact gtctgtttcc
      361 agtgaatttg ctttgaaaaa aaattaatgc tcatccttag tggagcacag taataaatgg
      421 aagtaccctt aatctgttaa gcactaataa cctaccaatt attcatcatg aaccccatgc
      481 tgtataatgt atgtctgtta caattttatt agctattctt tacttaacct gcatttttat
      541 tccagcttac acactgaaat tatatgatgt tttaagtgat gtgccattaa atttacaaaa
//
LOCUS       KCLJ01001621             240 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 181158cal ultra-conserved element locus
            uce-3646, sequence.
ACCESSION   KCLJ01001621
VERSION     KCLJ01001621.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 240)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 240)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..240
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="181158cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>240
                     /note="ultra-conserved element locus uce-3646"
BASE COUNT           76 a           45 c           51 g           68 t
ORIGIN      
        1 agcatttcca gcagctcagc aagagagaaa ggctcggctt tatatcattc tttatatcat
       61 cgttgttaag agtagcaggt attgatgtac aatgcatctg tcatcttatt gtgcttccta
      121 tgaaaatgtg tgtacatagt acagataccg gagagaattc cacacttgaa ggcattcaga
      181 gatcagtaac agatggcaca agaacaaggc cttatctaca ctggcatgat gcatatagat
//
LOCUS       KCLJ01001622             672 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 181251cal ultra-conserved element locus
            uce-1415, sequence.
ACCESSION   KCLJ01001622
VERSION     KCLJ01001622.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 672)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 672)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..672
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="181251cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>672
                     /note="ultra-conserved element locus uce-1415"
BASE COUNT          237 a          142 c           94 g          199 t
ORIGIN      
        1 cttacatagt aaaaaataat tgacctttcc ctgccctaca tattttggca aggcaaatga
       61 actattccat atagatagac acacatgcca caaagtgatg gaaacaaaca aggcctggaa
      121 gcatcttttg ctctcagaat aattacctat gcacaaactc tagatggcaa cattgcactt
      181 actgtattac taaaacaaaa tgtcacactg agtccctaca tatcctcttt atcaacattt
      241 tatgtgccac agatctatag cctcttatta taagtgtaat gaagcagaag ttattgaagc
      301 attttattga ttgctcagat cacaagttta ctgtcatact gaattggcac cttacttgct
      361 gaagcaaact gctgacacct ttttaaaaaa gtgacaacta catctatttc atgaccagaa
      421 atccattttc atctctatca agacaagaat gcaattttca cttcatttaa ctgatgttag
      481 gcctgctcaa ggcatgacac ttggaaaaag acacaagttt aaggttctta aaatacttct
      541 ggtaactaga atgctgctca aaaaatctca agcctcactc aaatctataa acagcccaac
      601 attctaagaa tcacttagca agagggcagc tttctatttc aaaattacca aaatattatt
      661 ttaataggaa gc
//
LOCUS       KCLJ01001623             594 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 181362cal ultra-conserved element locus
            uce-285, sequence.
ACCESSION   KCLJ01001623
VERSION     KCLJ01001623.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 594)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 594)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..594
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="181362cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>594
                     /note="ultra-conserved element locus uce-285"
BASE COUNT          175 a          108 c          117 g          194 t
ORIGIN      
        1 gggaaaaaaa ccattcttgt ggagaattga agtttagttt actctcagtg caaattttga
       61 aaagtggaaa ctgtgggtgt tatgtgcaca aggcagttga tttaaagaga tcagaaaggc
      121 atttaattta aaatcaattt caacatactg atttgtcctg cattacagtt acctgtagag
      181 atcctctagt catgtctatc tgtttttgat gcctctacag aataactgtc cagcatcctc
      241 tgcccaacca atcagaatgt aggaaaatct accgatatga cggaatctac tgtgaatcta
      301 cctaccagaa gtatgttgaa atctgtgtga gtcttgcctc tagctcgtgc atttagtgct
      361 cgtgctctcc tgctattctg aaattgcacg acttgtgtgc aaaacctcta caagtatgtt
      421 gtttaattct ttttgtgctc taaaagctaa gacttttcta aatctcttag gtatgcttct
      481 gtacagtgca ataaacaaga gtgtacacgc tagaaaatct aggcaaaatg tattgcacag
      541 gtgcttcaca tcttagggat ttgaaaggtg tgttatgtat aaattagctg tcac
//
LOCUS       KCLJ01001624             583 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 181472cal ultra-conserved element locus
            uce-590, sequence.
ACCESSION   KCLJ01001624
VERSION     KCLJ01001624.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 583)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 583)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..583
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="181472cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>583
                     /note="ultra-conserved element locus uce-590"
BASE COUNT          154 a          111 c          114 g          204 t
ORIGIN      
        1 ttatcaacag cccttattat ctggtcgcag cccgcggtga cataataagc tacaaatcac
       61 tggtcctttc tgcattctcc taattgtgtg tattctctcc tcttgtcttg atgagaaatt
      121 gacattttct ggcggaggga ctatgtgggg agataagact tatagttgtt ttaaaggagt
      181 gcagccattc tttcagaggc ctctttattg ctctagttga cccacttgat gagtatggat
      241 ttcatgaggt ctttttcagc atttgaacta taaaaggttc agaatgacac caccccttat
      301 agacaaaaga taaccttgcc ctttgaatat attgattctt tattaactag gctgtttaat
      361 gcaatgaaat gaggcattag attgaagcct atttcaagtg ctttgaataa tctttcttga
      421 aagactttta aaagctgctc tgcaataatt ggcatgtaca ctcttattcc ttcgttttga
      481 ttaaggaatt tttatcatct taaactcatt gtgggctgac acaacatatt tcctcagcag
      541 ggctcttacc cagatgtcgt aggtggtgga ttgctctagg aat
//
LOCUS       KCLJ01001625             612 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 181582cal ultra-conserved element locus
            uce-3871, sequence.
ACCESSION   KCLJ01001625
VERSION     KCLJ01001625.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 612)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 612)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..612
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="181582cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>612
                     /note="ultra-conserved element locus uce-3871"
BASE COUNT          220 a          113 c          112 g          167 t
ORIGIN      
        1 tttgctgaga atattcatgt ttgttcagta tgatcacatc tgaaatcact caaaaacaga
       61 aaagcaaaaa aaatatcatc agctgagtta aagctatgct gcttttaata atcgttttca
      121 gagaattatt ttatcagtaa aaaattgaat caagggattg gtaccataaa acctgtcaaa
      181 tcccccaaaa tagctttcca taaaatctca ccataagata aagtacagct tttgggcaaa
      241 aggagagtca tatctccagc aacttccata aataattcac tgctagcttg taaacaatag
      301 aaaagcacag tatgaatgcc aaagagggtc tttatatgtc ataaagccac tcaaaagtgc
      361 acttgctgca gcaagtctga ctgtgagctt tgatgtgctg gaaaagaaac tgctatgctg
      421 aggtcatcag ttagtagaaa acaatttccc tcatacagag aagcagactt actgctgtgc
      481 tcctgacaca gacagattgg acaagactgc ataatgtgca gggaaggaaa tcttctgtat
      541 accttctaaa tgaccaaagc tgaaaatatg tcatcttcct ttaaaggcta tcaaaagtta
      601 acgtgtggtg ag
//
LOCUS       KCLJ01001626             473 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 181690cal ultra-conserved element locus
            uce-5268, sequence.
ACCESSION   KCLJ01001626
VERSION     KCLJ01001626.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 473)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 473)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..473
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="181690cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>473
                     /note="ultra-conserved element locus uce-5268"
BASE COUNT          158 a           87 c          109 g          119 t
ORIGIN      
        1 cgtgcaaggc tttcgcagag tcaggaaagt tcaggcatga accgagttaa cataaaaatt
       61 gctagaaaac acaggaatgg taatttgggg ataagaaagg agggagaatt catgttataa
      121 gtgcaagtga tctggaaata gctgtttgtc ttggacattt gcagggaagt gacatcatgc
      181 cgtgtccatg gggatattaa ttctgcattt ttcaggccag attctggcac taaagttggc
      241 aaaattagac cattttgttg aagggatctc cgagccgccc acctccacca cacattacag
      301 cacacctatg acatgaccca agaacaatgg gtgaaaaatg ggctataaaa acatgaatgg
      361 cctgcttcat ataaagcaga ttttatagtg caggtgtgcc ttcatttatc gatactgtaa
      421 agcagtgaga tcatactggc agtaaaacac aacatttgta aaacaacaac tga
//
LOCUS       KCLJ01001627             327 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 181796cal ultra-conserved element locus
            uce-2454, sequence.
ACCESSION   KCLJ01001627
VERSION     KCLJ01001627.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 327)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 327)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..327
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="181796cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>327
                     /note="ultra-conserved element locus uce-2454"
BASE COUNT          102 a           67 c           74 g           84 t
ORIGIN      
        1 aatgtctgca catacattag gccagtttag agaacaatgt aggcatgaaa ctactgttcg
       61 tgcagtctgg tcagggctgt gtgacacagt atacagtgtt ttgtcatcca aggaatgtct
      121 ttgatcaaga gtttatgcaa gaagaagcca tgaaacccta atccgttccc acagtccagt
      181 aaacgtgagc tggacaaaca gtggacaata gcagcaaagc ttgctgctgg aacaatggct
      241 gcaactaaaa aaattaaagg gttgctgact cacagttcct actatcagtg ttgattattc
      301 cccagaatcc tgaagatgct gcaagtt
//
LOCUS       KCLJ01001628             731 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 181905cal ultra-conserved element locus
            uce-4227, sequence.
ACCESSION   KCLJ01001628
VERSION     KCLJ01001628.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 731)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 731)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..731
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="181905cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>731
                     /note="ultra-conserved element locus uce-4227"
BASE COUNT          235 a          144 c           98 g          254 t
ORIGIN      
        1 gtcaatcgcc tcagtaaatc ctcttctttc taagatctgc gatcatgatc ttgagctgtt
       61 ttcagagaat taagcttttc aagttatcct ttcagcataa ttatttcctt taaacatcca
      121 cttttgaact tttttcaaac ataaatttgt acacaacaat aaaacacgcc actaatttgt
      181 catgctcctc tgagcaactg tgtcactcac accaagaacc actgactgtg gtgtttggag
      241 ctttcgttcc tatttcacat cactcaattg agccttctgt agaaaagctt ttaacaacca
      301 catctggtct ttaataaatc actgcacttt gtcttcctgc caaaactcct cctttatcta
      361 acttacatct tcatgatgag ataggaaatc acacattatg gtggtgacaa acaattgtaa
      421 ttatgtcatt agtagccatt tagtctacaa aggttctcaa aaaggaaata taatgcacaa
      481 taagaaatat aggataatac agttctaatc cgctttttac ttcccaagtg taaaaagctg
      541 gcataattca tgggcacagc aggcagtaat agtattttat gaactatgca gctattttat
      601 tcccctatct acttaaaaat aaaaaagctt ttaatagctt gatttagaca taaaagttat
      661 ttatgatgct tcactgatta taatatttat ttatttaact ttccatgaaa gtgattcttt
      721 ctgaaatgta a
//
LOCUS       KCLJ01001629             733 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 182013cal ultra-conserved element locus
            uce-5707, sequence.
ACCESSION   KCLJ01001629
VERSION     KCLJ01001629.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 733)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 733)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..733
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="182013cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>733
                     /note="ultra-conserved element locus uce-5707"
BASE COUNT          230 a          125 c          163 g          215 t
ORIGIN      
        1 aaactcagat gtcgggtgtc atataaatgt aaaatgttgc tattctacag ggtggtttct
       61 atacatgtgt agattaaaca atggctttgc acagcactaa aatctgcagt gctgctgctg
      121 aaaggagtta attgtatggc tgtggacact gtggttttac tgagctaaaa gaggaggaca
      181 gtgattcatg actgcaccca tgctcttcgt catgaaatat aaattaaaaa tagttgtatt
      241 atggtaggct acctgtattg ttacattcat aatggatcac acatccgtcc ttgctcagtg
      301 ttgcaggcaa agcatgttag agaaactatg gcagtatttt tcttttaggt gtaacaatct
      361 gtcagtatca aattctctta gtcagtaggg agcatatagt gttgatttac tgaaaatctg
      421 ggattatgtc tgctctgtgg tgagcataga tttaagaggg gagagataag gggtctccaa
      481 aaggtgaaga aaaacacaaa tgaaacctag caaggatagc ttgacagcta agatgcagta
      541 cagtcaccgt caagtcttct tgaaggaaaa cccttgctca caggaatgct ctgagcactg
      601 cctgtacctt aaacaaccca ctccattacc cacttcatgc caaggaactg taaatgtata
      661 aatgaagctg tgggtaaaaa gccttaatat ttctgtgtta catgtaaaaa tattttgtga
      721 tgaactggaa acg
//
LOCUS       KCLJ01001630             413 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 182122cal ultra-conserved element locus
            uce-3445, sequence.
ACCESSION   KCLJ01001630
VERSION     KCLJ01001630.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 413)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 413)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..413
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="182122cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>413
                     /note="ultra-conserved element locus uce-3445"
BASE COUNT          126 a           64 c           77 g          146 t
ORIGIN      
        1 gtggatctgc tgatgtacag tgcctttgct gctatggatc aaaatcaaga gacccgtgta
       61 gataaatctt attgtataag tagaaaatta cttaatttca tactagaaat ggattgatgc
      121 tgcaagttaa aatggactgt ttattgaagt tccaaatgtg gtagcaaaaa atggtgtctt
      181 aagtgcttag tgtttgatgt cattaacagt ttcgtaatac tctacattgt agaaaaattt
      241 tgatactaaa ctgtgtcatt gtacatagtt ctaatgcatt gtattgacca ccagtacttc
      301 tataatggta gattattgtt tgtgcattca gacttttaag cattaaacat aagtaacttc
      361 ttccctcatt ggtcacggaa catgccacta cagatacttg tggttttgcc act
//
LOCUS       KCLJ01001631             530 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 182227cal ultra-conserved element locus
            uce-3493, sequence.
ACCESSION   KCLJ01001631
VERSION     KCLJ01001631.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 530)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 530)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..530
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="182227cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>530
                     /note="ultra-conserved element locus uce-3493"
BASE COUNT          160 a           92 c           87 g          191 t
ORIGIN      
        1 aaagccaatc tgaaatgaaa ctagtctaaa aattcattgt tgcagctgta cctgaaataa
       61 aaatgttatt gatgactgaa ttttcttgtg tgtatatttg gtgagctgta ttaaaacaga
      121 aaaaaaaaga aattacttgt attttcttcg ctctctgctt tgaaaacatc tatttgattt
      181 cacccccatc tgttgtaatc aataacctga ccatcttgtt ttttattaaa tgcacttact
      241 cttaatttca tccaccagtg gttttagaga gaataatgtg gagttaccta tataggtttg
      301 acattataaa tcacttcttg aggctgaatc gtatagcggt atcgattgat cctgatatat
      361 cacagaaatt tactgtcact tctgttttca attaaagata caatcagtca gataatgact
      421 taattggatt ttacagaaga ttgagtttta ttgcccagtg ctttacgagt ttagttaagg
      481 aagatcattt tatcacactt gtcagcctgc tcccgcggct ccgtgccctt
//
LOCUS       KCLJ01001632             367 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 182445cal ultra-conserved element locus
            uce-4686, sequence.
ACCESSION   KCLJ01001632
VERSION     KCLJ01001632.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 367)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 367)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..367
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="182445cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>367
                     /note="ultra-conserved element locus uce-4686"
BASE COUNT          105 a           94 c           74 g           94 t
ORIGIN      
        1 aaaaacctgg agggggaaaa aagctgttgg accgccacca aatctccccc cactagagac
       61 aagagcccat ctgctgagct ctgcaactta gctttaacta ccattcaact cgagtctctg
      121 cagagatcaa tctgcagagc tggcagatgg acccctgctt ccctgagtcg ctgtgttatt
      181 tgtttaataa atttaattaa tatccatact gcactggatt gctcccagaa agggggctgc
      241 agctcgcgct ttccccgata gcaacatgat gagtgatttc ccagaaaaga ccagataaca
      301 gtacccccag gccactgaaa aattaaaagt gccatgtgct tgcattactt ctcatgtatt
      361 aattttt
//
LOCUS       KCLJ01001633             374 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 182544cal ultra-conserved element locus
            uce-5223, sequence.
ACCESSION   KCLJ01001633
VERSION     KCLJ01001633.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 374)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 374)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..374
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="182544cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>374
                     /note="ultra-conserved element locus uce-5223"
BASE COUNT          132 a           70 c           65 g          107 t
ORIGIN      
        1 tgagcacact gccatcttta tgaatgcagt tatagatgta ctcccacagc cctgaaaaag
       61 taacaccagc caggctctca aagggttaat ctgcagttta ccattgaata acataaaatg
      121 agctgtaaat aatgtaatga tatgtattgt taagctacat atactgtacc aggtgcaagt
      181 actcccactc ctcacttaga tataatctgg ggcagtcaac aaacacagat gcattttaac
      241 aaaaaagaaa gagaggatta aaacatatgt aagataattt aactgagata atgatccagg
      301 taaaacctgg cctatttttc agagtcactt taactctgcc gtgtaaaata caatggcatt
      361 ttgacttgtt tttg
//
LOCUS       KCLJ01001634             669 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 182649cal ultra-conserved element locus
            uce-44, sequence.
ACCESSION   KCLJ01001634
VERSION     KCLJ01001634.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 669)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 669)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..669
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="182649cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>669
                     /note="ultra-conserved element locus uce-44"
BASE COUNT          209 a          173 c          107 g          180 t
ORIGIN      
        1 cgttctgctg cagtcacact ttaatgcaat tcaccattta catctgcaaa agtcacacaa
       61 ctctgcacaa tgaacatgcc cgtaatccaa taataaaagc tgtaacacgc tgccttgcat
      121 ttactacgcc gccaagattc ctccacttcc aactattttt agccaataaa gcagaaataa
      181 atccagctcg cgaggcaaca acccagcacg atatgatttc catagctaaa acactaaaga
      241 caaatataat tatattgagt acttggactt ctataaagtg gtgaacttgt tctcaattgc
      301 ctgacacaat cccagagtga tggcaacaac tggtcagccc tatttgatta ctaataagag
      361 agatgtccct tctgtcagat acctcacatt ccccactaag caaacagcta tttcagctag
      421 ttaaacatta gcattgctct ccactggtgg tgcatatttc tttaggctta actcagggag
      481 ttttccaggt ttaatttttc aggcactgga cagcaaagtt catgatcaaa agataacttt
      541 gtcctgcgag ctactgaaac acaagtcaaa ccagcctaac cctcttcttc acaaaaccgg
      601 tgtcgggtga acacccattt attgctccaa ggaacccatt tcagcagcct ggctcaatcc
      661 aaaattgcc
//
LOCUS       KCLJ01001635             427 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 182756cal ultra-conserved element locus
            uce-534, sequence.
ACCESSION   KCLJ01001635
VERSION     KCLJ01001635.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 427)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 427)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..427
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="182756cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>427
                     /note="ultra-conserved element locus uce-534"
BASE COUNT          139 a           75 c           76 g          137 t
ORIGIN      
        1 tgcaacttga atacaatttc tggtcagccg tgtatacagt cccaaaatgc atcaaattac
       61 tcaaaccaaa tatcatgtgt ttgtgaatgt tctgtatgta attaattgag tgtctgagac
      121 agtttcatgt gtaaatctgg ttatttaggg agcaatttgc taaactatta ggcaagttta
      181 acctacatta tggcatctag agcaaaagga caaaacagta aagccttttt taatctcacc
      241 ctgatcaaac aaccctcttt ctccaatcac agctttgtgc gtgatatctt tctgctagtg
      301 tttcttattt aattaaaaca gacactgaca gaaggacatg gattaggact gtaatgatgc
      361 atttacttag attaatcgga gcctcctttt ggagtaatgg cttaaacaaa gaacaaaagg
      421 aaattgt
//
LOCUS       KCLJ01001636             615 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 182867cal ultra-conserved element locus
            uce-898, sequence.
ACCESSION   KCLJ01001636
VERSION     KCLJ01001636.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 615)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 615)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..615
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="182867cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>615
                     /note="ultra-conserved element locus uce-898"
BASE COUNT          172 a          123 c          133 g          187 t
ORIGIN      
        1 ccactaaacc cttttctgtg gtggggtctt tgttattgct ctggtttttt taaggatggt
       61 tattgatctc ttgctgagct gagatttcag ttttatgcca gatagtttga ttaatgggtt
      121 ggtttctgta agtggactga atggggatag gaagcacaag ccgctcgtac cgccaaccct
      181 aactccgtca agacgcatag ctcattatga aacagttatc aagtatacat gaaaaattaa
      241 ttggactcag tttgattctg aaaaggatca gctttctact tggcggtccc cccaatcttt
      301 ccagatgttg cacgctagcc cctcgagaag cagcgaaggg agatgtatta atacattgta
      361 ttgattagat caagacccct gacagttatt tgtagagata ccatctggct gctgttcgaa
      421 ttccttcacc aaaaacagga cgtgacatgt tattaatctc aactctctaa gtatagacag
      481 ttgccttttc tgctaaaccg cattttacca ttccgtagga gatggaggca gacctgaagg
      541 gtgctgaaat taaggttatt acacaaattg agccatatgg tccaaatatt tcagcaagaa
      601 aattgccagg caata
//
LOCUS       KCLJ01001637             559 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 183085cal ultra-conserved element locus
            uce-6995, sequence.
ACCESSION   KCLJ01001637
VERSION     KCLJ01001637.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 559)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 559)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..559
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="183085cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>559
                     /note="ultra-conserved element locus uce-6995"
BASE COUNT          169 a          126 c          118 g          146 t
ORIGIN      
        1 tcagagccag acctctgaag ttcttgctga gccaatttca catttgaaat attgtcagaa
       61 gttatccatt ttagcaagct agacacaaca cactccccgg ctcctggcag ggaacaatgg
      121 ggagcgtgca gtggctaagc actctcattg aaaaaaccag gggatgctgc agtaattgtc
      181 ctgagaggct agaaaggaaa caagcctctg tgctgacagc ttagctcagc gtgaactctc
      241 atttttcaca tggagctaat taaaaactga aattagttaa atatggaaat gacacttgca
      301 agcactttag ctgaatcctg gcgaaatccc tctagagcgc tgagacacta cctgctgctt
      361 caaaactccc caactgaatt tcacagttaa aaggctgagc aaagggaaag ttattacaga
      421 gatttccaat tcaaaatgtg tctgtaaaat cctaaattaa atttcatggt agccctttca
      481 ataacgaggg acatactgtg cagagctggt gctccaataa cgtccctgcg tgtattctct
      541 gattgtctca cctttgggc
//
LOCUS       KCLJ01001638             375 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 183192cal ultra-conserved element locus
            uce-8036, sequence.
ACCESSION   KCLJ01001638
VERSION     KCLJ01001638.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 375)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 375)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..375
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="183192cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>375
                     /note="ultra-conserved element locus uce-8036"
BASE COUNT           94 a           78 c           93 g          110 t
ORIGIN      
        1 ggcacaacac aggagcagtg agataagaat cgtttcgatc attcttcctg cttctctcag
       61 gttgagaatg tgaatcagaa gccgacatac ctgtatattt tatatctggt tgtaaatcct
      121 tgacgatgtc tttccacaaa ggataagtaa ctccgtgagt ggtggaaagg ccccctgtct
      181 gaaataagcc aatcaaactc cttggagaca tgttggttgg tagcagctgg gtcctggtgg
      241 gagggctgta tgagtatatg gtcccatata aacaggaggt agaggaactc aacaagcctc
      301 cagttcatgc ttttctgtct gcctttttcc tctcattctt gctccattct gtggagtcct
      361 gttgatagga ggaag
//
LOCUS       KCLJ01001639             457 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 183294cal ultra-conserved element locus
            uce-7047, sequence.
ACCESSION   KCLJ01001639
VERSION     KCLJ01001639.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 457)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 457)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..457
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="183294cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>457
                     /note="ultra-conserved element locus uce-7047"
BASE COUNT          115 a          101 c          132 g          109 t
ORIGIN      
        1 gacagatctc cataacagag cccttcagca ccttggctta gcagctcctg agtttccctg
       61 cggatgaggg gctggggggg tgggaatgct ccgagtgcag cgccggggct gggattgcag
      121 aggaagctga ggcctccagc cctgcacagg aagcaatctt aaatgccaga ttccaggcag
      181 agtttaacta accactgaca gctctgtaaa caaagcaggg acaaaaagag aacagctttc
      241 ccttttctgg tagttttttg gtttgggggc tgcaggggaa ttctgtaata gtcggcttga
      301 tgggatataa accgaggctg ggaaggcttt gtatatgaag aactgtaaag gggacttcat
      361 ggactaaatc ataaaggggc acgggcaaac cgcgcggatt cagctactct tccttctttg
      421 tacatagttt gacttcccct ggctggtact taaaagc
//
LOCUS       KCLJ01001640             794 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 183402cal ultra-conserved element locus
            uce-7465, sequence.
ACCESSION   KCLJ01001640
VERSION     KCLJ01001640.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 794)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 794)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..794
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="183402cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>794
                     /note="ultra-conserved element locus uce-7465"
BASE COUNT          226 a          137 c          162 g          269 t
ORIGIN      
        1 ttttcaagtg tttgaccagc taggagcaac tcagtgtggc ttgaattttt ctgaaataga
       61 gtgtgtcaca tatctaacaa tcaaatttgc tacgtacttg ttgtttaaat tactcaataa
      121 gagtggaaag gagagttatc atttttagaa cgcgttccaa cagcttgtct ttggagttaa
      181 atagagctgt cttgatcatt tttacatata gacttctttg aacactaaaa agaattataa
      241 tcacctgatt ataaattcac tgttaatata gccttagagc tgagaacatt tcactccagt
      301 agttaattta gtctgtggta aattctcact gttatttaat gtcatttatc acctgctgtt
      361 ttgtcttact gtgaacatcc tgcctgccct gtacagtcta cagtacatgg accttctgtg
      421 actttaatgt actcagaaca aaggctccaa agtgcttctt tcgggaggat ttggcaactt
      481 gccttagata tattcaagcc attttgctgc ctgtcactca gtgctttaca aattgaactc
      541 tgaggagagg taaaaagggt ctataaggca ttttttttct gggaagaata tgctaataaa
      601 gcgccatcag caggaagcag gttgtgtctg aaagagtttt gtcaactctg aattaatttt
      661 gtgtgttaag aaacacgggg gtgcttctag agctggtctg tggtaattaa tccttcctgt
      721 ttctggaaga ggagaactgt aataaatgca gcccagattt aacagatgtg tgcacacaat
      781 gtctgcttta tgag
//
LOCUS       KCLJ01001641             388 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 183514cal ultra-conserved element locus
            uce-2692, sequence.
ACCESSION   KCLJ01001641
VERSION     KCLJ01001641.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 388)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 388)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..388
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="183514cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>388
                     /note="ultra-conserved element locus uce-2692"
BASE COUNT          115 a           64 c           86 g          123 t
ORIGIN      
        1 ttattatttt atagtgtagg taatttatta atcctaacaa agacgagtga tttggaggct
       61 gcattatttc ttaggagtta ttttatttga taatgacatt aaatattaga aactataaca
      121 gctggtgtgt ttatccttac ttgagtgtat taacctcttt agcccttttt tccagaagaa
      181 ggattcagca ttacagattt gactgtcagc tgcagtgcct ggcggcccgt tggattggca
      241 ccctgacaga atcgaaagtc cagtgctgca agtaaacatg gatgacattg cagatagata
      301 gaactggctg acttgaggca cctgcagctg tttgcaccag aataaaagca aaggttgtgt
      361 tcactggagt ggaaaaacac tgaattta
//
LOCUS       KCLJ01001642             246 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 183610cal ultra-conserved element locus
            uce-2642, sequence.
ACCESSION   KCLJ01001642
VERSION     KCLJ01001642.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 246)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 246)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..246
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="183610cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>246
                     /note="ultra-conserved element locus uce-2642"
BASE COUNT           67 a           63 c           59 g           57 t
ORIGIN      
        1 ggcaatctct gctatttcca gctgggaaaa gagcctacct gagacaagcg agactgtgtc
       61 tttctcccat gagacaacag tgatgtatgc ctccacagag gaggggataa tgcacttgaa
      121 cactgctaca ttgcctctca tggctttctg gtcctccaca cggactgtat agggttcccg
      181 taaaactgca gggacattgg gacagaaacc tcaaccatca ggctgggaac ttacaagtaa
      241 gcattc
//
LOCUS       KCLJ01001643             840 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 183712cal ultra-conserved element locus
            uce-5659, sequence.
ACCESSION   KCLJ01001643
VERSION     KCLJ01001643.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 840)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 840)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..840
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="183712cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>840
                     /note="ultra-conserved element locus uce-5659"
BASE COUNT          269 a          167 c          158 g          246 t
ORIGIN      
        1 ggcttctact atctaaattg cccttcccac agtgcctaag acaagcatca gtgctccatc
       61 acaaaataaa tgtgttgata tttgatagct catttgaaca cgatggtatt tacatcttac
      121 ttggttagat tttcatttaa cacaagttat gggttcacat tgaaaataaa aacaatactt
      181 ctctgttcct cttgccattc atgtctactt ttgtttcagc ctaaaataac acattgctgg
      241 agggtatttt cttaacactg ccaagcctga atgcaagccc tgtggaaaat gtttgtgttg
      301 ggcttgccat ggtccaggct aataacaacg tgatgatgta taggtgaatt cctgctcctc
      361 aagtcctctg tgacacacgg attaggtctg cccttatctt ctaagacatc tggatgagtg
      421 tctgggtttt aatttcacaa tgaaatcaca ggggactaga gttatgttat gtgcttatga
      481 acaaagtgga atatccctgg taagggcaag agtggattac cttagataac tctacttaaa
      541 ccagggaaca tttgagaatg ttgaagaaag gaaagaggtt ccaccaataa aaacaaacac
      601 aggcttaaat ttgtgttctg tgtactaaac attttaaagc tcctggaggt tgaaatatga
      661 ccacatgtaa atggactgat aaaactaaga caactcttga aagaccagat caggcttccc
      721 aggacaacta ccagcactaa atcctaatgg catgcataaa tcatctgaag acacactatt
      781 caaaagatgc cactttaaag tcaaaatctg ctttaatcac cagaaatagt atgtgcacgc
//
LOCUS       KCLJ01001644             669 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 183820cal ultra-conserved element locus
            uce-7981, sequence.
ACCESSION   KCLJ01001644
VERSION     KCLJ01001644.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 669)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 669)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..669
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="183820cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>669
                     /note="ultra-conserved element locus uce-7981"
BASE COUNT          197 a          135 c          110 g          227 t
ORIGIN      
        1 aaacttcttc aagaaattat gagatagaca ctttattgag attacatcat cattcacagt
       61 tttagatatg aaaacatatt aacaattcag tgatgcttct aaggtggaca ctttcttggt
      121 aggcagcact aattgctgca atagctttta ggtgttctaa tgcactcaag tgaattatgc
      181 accacactgc ttctgaatga cacagccatt tctgactcca ttaatatgga agatttcagc
      241 caaatgcttt taaacgatag cttctcttta tttgtaattt cagactctat tgatttcctt
      301 ctgttccctt cattatgatt tcaattgatt accttggcaa ctgcaataac aatgattgca
      361 cttgacactg tctgagactc tctagatggt atttgaatag gaatggtata attgggggaa
      421 aatggctaca agaacctgcc attaatgtta cacttacact ttacttttat tgacttcact
      481 ctctttcaca ggcccttgtc agggactctt tgcaaatatt ggttaggatt tcagtgactc
      541 cttgaagtaa aaaattctta ttaacaaaga gaacactttt ttccagcact gtgtcacttc
      601 agggaaatgt cccactctac atgagatttt tgctcccttg ccagaagagc caccaaaaca
      661 atgttcctg
//
LOCUS       KCLJ01001645             544 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 183929cal ultra-conserved element locus
            uce-654, sequence.
ACCESSION   KCLJ01001645
VERSION     KCLJ01001645.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 544)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 544)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..544
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="183929cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>544
                     /note="ultra-conserved element locus uce-654"
BASE COUNT          175 a          112 c           83 g          174 t
ORIGIN      
        1 aaactttgat ctttacacac cgtttcagag tgcgttgccg ctttcaatac ctaatctttc
       61 caaaattaaa aatagcatta cactggtcag aaatgaaaga gattctgttc tggatggaat
      121 caaattcctg aacaaacttt ccatgaagta atctttacct acaggaagtc aattaaaatg
      181 tgacaggaga gattaagggc tctgtgacag atttcactgg tctgtactca gtatagacac
      241 agcaatgcta taacattgaa gttacaatga atatttaaca atccaatgac taactactct
      301 acaagagttt tcaaaataat gtgatgtccc tatttgttag agcaagttca ctctggcatc
      361 aattaaatca tgaactgtca tcttgattgc tctctttgtt gagggacagc acatttccat
      421 ctaaggatca gctcagcttt atatctctgc aagacaattc ataattctga gcagcagaat
      481 gaatgcacaa attacattct tcaacctttt actcccacta aatctttcct tttttccact
      541 ttgc
//
LOCUS       KCLJ01001646             762 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 184035cal ultra-conserved element locus
            uce-1888, sequence.
ACCESSION   KCLJ01001646
VERSION     KCLJ01001646.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 762)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 762)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..762
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="184035cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>762
                     /note="ultra-conserved element locus uce-1888"
BASE COUNT          265 a          148 c          131 g          218 t
ORIGIN      
        1 aacaggctac agccaagaga ggtgtgcttg tgaatgggtt ggcagctcta aaagctgggc
       61 tccaatgatc acacccaagc aggttgctca cagcttagct attgctaaac aaaaagcccc
      121 ttacagctac agctcatgct acatttcctt ttcaagggat agttttagat gcaaatccat
      181 ttacagaggt agataagatg aaatgtgcaa cagacacacc tgactaactc gcattttgta
      241 tctctaacac tcaaaagtac aatgcttatg gtaatgaatt ttatctatta caagggaaaa
      301 caatcacctt tgatgacatt atagaataaa cacatttaac agcatgctga attgctgaag
      361 tatcattttc aacgacctca ttagtgtcac ttaattaaaa cttcctgctc ttgactttga
      421 tgctggtgca ggcaaaaaca cagagagaat tgaacaaaca acaaaaaagg gaggggtatc
      481 ttctagtgat aaatagcagt agttgctaat gaaaccaaat tatgtacctt tttcctgcaa
      541 ctccgataaa ataatatgaa acacacagca actttgcatc aaacaaatta atcagccgtc
      601 agcagattcg cctgataata atctcctgcc cttattgata atttaaggaa aaaaagttgt
      661 ttttttctgt acacaatcat taggttggtg ataattaaag cttcagcttc agaaatgcca
      721 taataaccgt taattagcag gatgctattt tcaacataat tt
//
LOCUS       KCLJ01001647             651 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 184145cal ultra-conserved element locus
            uce-2620, sequence.
ACCESSION   KCLJ01001647
VERSION     KCLJ01001647.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 651)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 651)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..651
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="184145cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>651
                     /note="ultra-conserved element locus uce-2620"
BASE COUNT          191 a          153 c          136 g          171 t
ORIGIN      
        1 tttaggtcct tgataaacaa caaggtttga aaatttctct caatacagag gaaagacctt
       61 ggtgcagaat aaaagacatt ttttttaatg ctaataaata cgctcgtacg gaggttttcg
      121 catgcaaaaa gcagcagagc agctttccat ggctactgct ccttgccttt cacacccgcc
      181 tcgtctgcca gctggatcta tcttgaagga gagaccttaa atccctgcaa gcagactgta
      241 aggcacatgc agtagcagca gtgcactgac atttgctaag caccagcgtc cctcaagtga
      301 ctgggagcga agccattgac gtcactgaac aataggcaaa atatttcctc ctcctccata
      361 gtcctgaact gtaaacaccc agcttgcaca cagcaggctg aacatttggg gagaggcgga
      421 gaaggagaat gtgaaaaact ctcaactgat gctgctgaaa acaagcagct gttcctgcat
      481 aaccagtctc tccttattcc ttccatgagg attgctggtt ccccctagca taggtcagaa
      541 gataaagtga agtatgaata actttgtcta ctgaactcac aaggaatatt aattatgagt
      601 ttctccctct ttctgtctct gtcatggata actgcagtat tgtaacagtc a
//
LOCUS       KCLJ01001648             634 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 184255cal ultra-conserved element locus
            uce-6100, sequence.
ACCESSION   KCLJ01001648
VERSION     KCLJ01001648.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 634)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 634)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..634
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="184255cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>634
                     /note="ultra-conserved element locus uce-6100"
BASE COUNT           99 a          238 c          148 g          149 t
ORIGIN      
        1 cccagcttcg cgcccctgcc cccgtctcct ccggtcatga tcagcagccc gccgggcaag
       61 gccgccgggc ccagacccgt cctgcccgtg gcggcttcca atgcggcggc ccaagcgtcc
      121 tcgtctccca cggctcccaa cgggcttccc gaaaacctgg cttatccggt tccttcacct
      181 tctacctcag gtccaacgcc gcctccgcca cctcctcccc ccccgctgcc ttcctttccg
      241 cctctgtcac tctctgggcc tcaagcttct ccttctccca actccccgaa tgcctcgact
      301 ccctcatcca agcctagtgt tctcccttct ccctctgcag ctacccctgc ctctgttgag
      361 aactctctaa actctgtgct gggagactcc tctgcttctg agccagtctt gcaggcagcc
      421 tctcagccgg ttgaagctcc gagccagcag ggtaaggctt tctgttattg ctactaatgc
      481 gctgcaggtc agaggactgc ccccaggcat gagcgctgca ctgatcctaa tgccaactgg
      541 ggtaagggaa atgtgcctag gagccgatta tggcctgttt ggataaccct gcactgttgg
      601 tttgtttggg atagattgtc caatggcagc caac
//
LOCUS       KCLJ01001649             525 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 184364cal ultra-conserved element locus
            uce-4090, sequence.
ACCESSION   KCLJ01001649
VERSION     KCLJ01001649.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 525)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 525)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..525
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="184364cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>525
                     /note="ultra-conserved element locus uce-4090"
BASE COUNT          169 a           89 c          105 g          162 t
ORIGIN      
        1 tcttttggcc atagatggtc tatgaggcat gcaaaagaag gattttaaca caaatataat
       61 tttaagctcc cataagggct gaactgaaag cagtgcttag ctcggccact gtgctgagga
      121 gattgaagga gttactttcc tcaggaagga tcattgagag tgtcatcggt taattcctgt
      181 tctatgctcc tcattagcat tactctcaag tttctggtta tcatatccga aatattaaga
      241 cataataagt acgaaggtgc agataattgg atattaacca gaccatactt gactgggcag
      301 gaggtagggc cttgcttaaa ctaatcctga aatgtattaa tcaccaatta atgaatgggt
      361 ttcaaattca ttttctatta tagaacacct ctgagtatct aagctttttc taataaaatg
      421 agttggaata acaggataga aataagaaac gctccaattg aggctggttt gaattaattc
      481 cctttgttaa gttcattgaa aacaataatc ctcgaagcag tgact
//
LOCUS       KCLJ01001650             710 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 184468cal ultra-conserved element locus
            uce-4208, sequence.
ACCESSION   KCLJ01001650
VERSION     KCLJ01001650.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 710)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 710)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..710
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="184468cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>710
                     /note="ultra-conserved element locus uce-4208"
BASE COUNT          223 a          125 c          164 g          198 t
ORIGIN      
        1 tttccattgt tgttattgta ttattttaac tattttaaca aatccacaat gcttaatacc
       61 actctaagtt tatgaaattt acagattacc taaaatgcta ggagttaatt acagtctgct
      121 ttccctggca tgtcagcttg attaaatttg gagttccaag atgaattggc ccaaattcat
      181 tagtgttccc cgggtgcata tgttggtcaa ggtcaagcga agcacattga ctgtagtgtt
      241 agtcaggagg gggaagggtt tctaaagaag gtggactctt aaaaggtctg gggttgcagc
      301 aagaaacttt gatacttttt aacttaataa atcttgacag cctaatcatg gctaagcctt
      361 tgcagtgtta ttggtacaga tggcaaagct agacatattt aaagagatct cagcagctag
      421 tggcaggaga gcattgaatc caaatgcact gttgggctct cagagaaagt gcaagaagag
      481 aggataaaaa gctacacagc atttccatct cttgacatct ccaacagcct cagatacaaa
      541 atatgataag gctcctgctg agctaataag cccaacaaat gtctgtgtcc atgaagtaga
      601 tgaagtggga tcaagtagtt gggggctgct gtatgaaaat aagccagcac ccagggtata
      661 atggcactgt agaaagctgc aaggtcaggc tgatgacaga aacagtggat
//
LOCUS       KCLJ01001651             472 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 184576cal ultra-conserved element locus
            uce-7679, sequence.
ACCESSION   KCLJ01001651
VERSION     KCLJ01001651.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 472)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 472)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..472
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="184576cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>472
                     /note="ultra-conserved element locus uce-7679"
BASE COUNT          153 a           82 c           94 g          143 t
ORIGIN      
        1 tgctgctgct aactaacatt ctgcatagaa aatgcaatcc ctgggaaaga aggagcattt
       61 atctaagtgc tgacattgaa acattctgaa taactccttg aatcatttgt actattatgg
      121 ggagaaaatg taattattgt aatcagcctt gagtctgagg ccatgttgtt taaaagaagg
      181 gagaggggag ggggaaacca gatctgaaca acgaaaatga accttgataa tggagcagcc
      241 ttgaattcca cttcatttat cacactaatg gatgtcaaga tgacctcaat caaacatttt
      301 gttttccagt tttaagcaat ggaaaatgtt atttaaattg ttcctagtaa ttacattaga
      361 gtagaaggtc aaagtcaata tgaaatagta tcaaccatga gtcttgtcca ggctctttgc
      421 tggcacagtt cacacatttc cataagccca gtgcaagctt tatgtttctc tt
//
LOCUS       KCLJ01001652             734 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 184672cal ultra-conserved element locus
            uce-6682, sequence.
ACCESSION   KCLJ01001652
VERSION     KCLJ01001652.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 734)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 734)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..734
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="184672cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>734
                     /note="ultra-conserved element locus uce-6682"
BASE COUNT          241 a          131 c          158 g          204 t
ORIGIN      
        1 ccaccagact ctgaaaacta gatgcaatag ttctcaaagg gttacaccac caacataata
       61 ccagtgtcaa gtctctcaat agtctgtctg ttgttttagt tcattgaaat ccacttcaga
      121 gtttttacca ttctttggaa tgagtgctcc tgacagacct ataaaaggcc tagttggctt
      181 ggtacagctt gggaaagata atgtaggaga aatcaaacca accaataaaa aggttctgct
      241 tgaatatagt attgaatatg agtttaaaac attgaggaca tagcccagag cagctgtaaa
      301 aaacacaaaa tgaatgtatt aaggctgtta ctatattgca gatattttgg ccccttgttt
      361 gttggaaaat ggctgtccga acagtctgaa gtcctgcgtg tcatccaagt ctcccacctg
      421 acaaaactgg aagtaggagt ataggacttt atccgtagca gacagaaagc aatcctcttt
      481 ggagacaaag ctgttttggg tcttctcgct ttcctgaaag ttccattgtc ggttgttgaa
      541 aaaaatttac tttcagcaaa aaaaagggga acaggcctta aggaaaaaat gtagaaacat
      601 tggttattcc tctttgttag ttaatcctga tagtttatag ggcattgagc gtgcagaggg
      661 aaggcctaga attgaatgac aaagaaagac aaaggactga agaaacagca gatactgtgt
      721 atcatggaag cttc
//
LOCUS       KCLJ01001653             778 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 184779cal ultra-conserved element locus
            uce-1259, sequence.
ACCESSION   KCLJ01001653
VERSION     KCLJ01001653.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 778)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 778)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..778
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="184779cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>778
                     /note="ultra-conserved element locus uce-1259"
BASE COUNT          262 a          151 c          139 g          226 t
ORIGIN      
        1 tgggactctt aaaggtcatt tgttgaacag tttcttctaa gcatatatga caaattattc
       61 ccttggcaca ataaacagga ctccagccct ttaattataa tatagcactc aatatcttta
      121 gacatttcaa catttcctgt gtatcctaca catttcatta caaggaaagg ttgaacagaa
      181 ttaaaagggt gacattaccc aaagattgat agtctacctg tccaaaaggg aaggttgtag
      241 tacaagagac cacaaaggaa ggaaggatcc aaaccaagtt ttgattgcag aggagactcg
      301 gataagagag tttttattat ccacagcttt tagccttatt taccatcagg ctatcttgcc
      361 acaagcatgc tttttagttc tgacagctct gaattatgac cattgtggga tcctatctca
      421 ttaactgaaa tgggagaata aaacatcaaa caatcataaa aataatttgg cactgtgaaa
      481 ccacttagga gcagctgtca aacaggttgg aagataaagt tctaaataaa aagaatagaa
      541 agcactgcaa tgtcctgcca tatgcttcct ctgcattata gactccttaa taatatgaag
      601 tgcctgtgtt tatgcagaat aggccagaca ctccatatat gatattgatt atgccttaac
      661 cccaatttag taaagacata ctcctccttt tcctaatcag atattgcaga agcagttttc
      721 tgaaaacgtc cctaatgcca agacatattt tatctccgaa ggctgtggca ggagatag
//
LOCUS       KCLJ01001654             553 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 184889cal ultra-conserved element locus
            uce-3731, sequence.
ACCESSION   KCLJ01001654
VERSION     KCLJ01001654.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 553)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 553)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..553
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="184889cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>553
                     /note="ultra-conserved element locus uce-3731"
BASE COUNT          169 a           97 c          101 g          186 t
ORIGIN      
        1 ttttaaatgc tttgaacaaa catatctccc catacttcta agggattatt ttacatattt
       61 cttggtggaa taaagaaatt cattcttcct gtcgcagtac agaaaggcta agaatatctt
      121 tcgtcacata tatactgtag gctgttgcat tattaaaaaa ataaagagag ggggtggcag
      181 ggtaggagaa agctgcctta gagattaagt ttccctttta tgaaatcgta tttagtctct
      241 ttttttaaca aatctaacaa caatgctcta cagccgctca ctgggaaata cctttaatgt
      301 taaatgcaga ttctgatttt cttggctaat gcagaaagcc tttctattga aatataaata
      361 aggggtttgg tatatcccac taaagccttt ccagtgaatg acttctgtgg gtttttcatg
      421 gctaccctcc atggctgtaa tgtgaggctt ttatcctact attgaaaact atccgctgct
      481 attaaaaaaa atatggaagg acactgcacc tttttatctc agagctgggc tcctaattga
      541 gaaagtatta tta
//
LOCUS       KCLJ01001655             342 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 184996cal ultra-conserved element locus
            uce-6564, sequence.
ACCESSION   KCLJ01001655
VERSION     KCLJ01001655.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 342)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 342)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..342
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="184996cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>342
                     /note="ultra-conserved element locus uce-6564"
BASE COUNT           88 a           83 c           69 g          102 t
ORIGIN      
        1 gcctaagcct tcggacagcc gaacaggacc acggaaaagt cctctggaac tggaactgaa
       61 tcctgcctag aaagcatcta aaagcacgct tcatcccttt tcccttaaaa aaatattttg
      121 ttaaaaaaca ctatgatatg agggcaattg actatttggt ttcttctaag tagatgctct
      181 taaattaatg catataaata atttgtattt aacttcctcc cttcctgttt agcaaagcgt
      241 cgaccgcggg tttcccctga gtcacttggt cagtaccgag tctctctgcg tgtcactttt
      301 gaggacaaag tgtgcctctc gctctgcctt ggccgtgggg ct
//
LOCUS       KCLJ01001656             558 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 185097cal ultra-conserved element locus
            uce-4482, sequence.
ACCESSION   KCLJ01001656
VERSION     KCLJ01001656.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 558)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 558)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..558
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="185097cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>558
                     /note="ultra-conserved element locus uce-4482"
BASE COUNT          192 a          108 c          100 g          158 t
ORIGIN      
        1 aacagtaatt caacttggga agtagattca acttccagcc caaaagttta ttcaagttaa
       61 gaaaacacat tctcagatta aaaagagtat tgcaccactg tcaattttca gacgttgcca
      121 tcaggaaaaa aaaattacat ttcaggctga cgagcgacta atcaaggcaa gtgaaacggt
      181 gctgcaataa attactccgc agcgaaataa accacacaaa cagaccgatg ataataaatg
      241 taaattattt ctctgaagaa attttcttgg tatatgagta atacgaacca tcaggaagga
      301 gtcttcctta acattaatta cagaaaatga caagtgagct gatgactgcg aaggctcatt
      361 atctgagaac atattcacaa ctttgcaatt tgcgcgagat gtactcgggc taaattaatc
      421 tcccttcttt gcatgagcct cttctaattt tcatgttatt aacaggtttg cagtatcact
      481 cagtgcttgt cactctaatc aggtttcggc atgttcgcaa aagcgaagtg tcatttataa
      541 ggataagccc tcataatg
//
LOCUS       KCLJ01001657             454 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 185208cal ultra-conserved element locus
            uce-5625, sequence.
ACCESSION   KCLJ01001657
VERSION     KCLJ01001657.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 454)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 454)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..454
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="185208cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>454
                     /note="ultra-conserved element locus uce-5625"
BASE COUNT          143 a           77 c          108 g          126 t
ORIGIN      
        1 cactgaaaag aatgtttatc tctgtgtttc ctccagttcg ggagtaaaat tagactctta
       61 aaacctgggg atggtgtgtc tttaattttg tttagaacag aaaataactg tgatatgaaa
      121 ggtttaatga ggttagaaat ctaaaaggaa atggagtggg aatagattat caagagaaat
      181 aaagccaacc gctggagagt acactaatat taaatattag gtttctaaac caaatatata
      241 taatccattt agggacttaa tggtggttct cagaagcaca tttatctaca gcttatggtt
      301 caacaaccaa tattataact ccatttgtca ttgttaggcg agggggatgg atgtcaggga
      361 ggcgagggtc agcacacgag gcggagctcg ggacacgcct tgggggagct cacctgcaca
      421 tttctgaaga cctgccctgg aaacgtctcc ttac
//
LOCUS       KCLJ01001658             669 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 185312cal ultra-conserved element locus
            uce-4599, sequence.
ACCESSION   KCLJ01001658
VERSION     KCLJ01001658.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 669)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 669)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..669
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="185312cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>669
                     /note="ultra-conserved element locus uce-4599"
BASE COUNT          199 a          126 c          115 g          229 t
ORIGIN      
        1 ttgcatctgg tactgatgcc gtgtgaaatt tatttgttta aactttcagt cacacatgga
       61 aagttttgca gatggtgtct cttctcatct gctttttcca atttaaactc cagttcttac
      121 tctctcgacc ccccaatttg atttctcctc cttctaaaaa aaatagatct aatcagtagc
      181 atgttaaaca agaggggatc ttttatgtat tctgtgttag gacaaggaaa gcatcgctgt
      241 agatcactag aataaacaac tcaggctgat tcaattacaa tgcctgggcc aggcttttat
      301 ctgctggtga catcatttca atcaaaatgt aaaataatac aatccaatag atgcaagagg
      361 gagagatagg acacagactg ctgcacttag tcatttaata aaaaaaagtg gaagaaagct
      421 ctttctgaca ggctgctagg acttccattt ccaaaactct attacctggt ataatagtat
      481 tcaaaagaat tgaatgcagg aaattgtcta ttacttttta ttagtagaag ctgttatgta
      541 ggatacagcc tactgcactg ttttttcttt gttcctttaa ttaacaagag catgaaatcc
      601 ttctattggc aagcacttgt tccttctgtt gccttcagtt tttactgaaa aggtattctt
      661 ttctattct
//
LOCUS       KCLJ01001659             474 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 185421cal ultra-conserved element locus
            uce-7195, sequence.
ACCESSION   KCLJ01001659
VERSION     KCLJ01001659.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 474)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 474)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..474
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="185421cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>474
                     /note="ultra-conserved element locus uce-7195"
BASE COUNT          154 a           92 c           83 g          145 t
ORIGIN      
        1 ttttagtaaa taaaaaagac tgccactttc catcatttca caacacctag aaagacagta
       61 aaatcttcag agcgatcgca tctttctttt gctggctctc acacacgttc cccctagaga
      121 agcagatgtt tgacttgtct catgtaaaag gcaaaaattg agttacagct tcagattgca
      181 ggatttgcaa tgtttgctac agtttattaa tgttaaccaa ataaaaatga cattagtgaa
      241 aaagatctac atgatatctc agaactccca agattaggcc agatggtcac ttctaactga
      301 tataatctag taagctctgt tgagagacag gctattgatt gaatttctgc ctttaaatgc
      361 aagctccata tctgcacatg tccacagtga tatcagttgc ttaaaatcca atacagaggt
      421 gtagattggg agatgatgtt agttgctacc tattaaaact gtcaattcca tctg
//
LOCUS       KCLJ01001660             790 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 185531cal ultra-conserved element locus
            uce-2980, sequence.
ACCESSION   KCLJ01001660
VERSION     KCLJ01001660.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 790)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 790)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..790
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="185531cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>790
                     /note="ultra-conserved element locus uce-2980"
BASE COUNT          240 a          161 c          149 g          240 t
ORIGIN      
        1 agaaaactgc ttgtactata ccgagttcat ggttgctgtt ttcagaaact gagtttgttc
       61 agtgtacata ttttccaacg aggaatcatt tcagcattat agcacctgca tcatgtcact
      121 gtgtattatg aactctagct cagccccacc ttatgaaatc tgaaacaaaa acaaagcaac
      181 aacacaggcc aggttttcta cttcagcgaa catttattac aatttgagtt gtgaatattg
      241 cagctaccaa gccccagcta ccttatgctc caggctggag tctttaaaca tcagtgaaaa
      301 aggcttgata tgctctcttc tcaatttatc gccactccgt aagtcgatgg tgtgctctat
      361 tcgcttgtta atttcctcag gcccagactg gacatgcaaa gcttgtgcaa gatggtttgg
      421 aagcagattt attgaatttc ttgttagggc agccagagtc taggggaaag cacatgcaaa
      481 cagaataaac ctgctggtcc ccttgggtta aaaatgcaat gttttagttc atgttgcatt
      541 gcaaaccatt acagcattcc atgcaattca ttcaatgaaa tctatagaag tgtaaaataa
      601 tttccactag acacatacag tacattggca ttttaatgcc ttacaggcta ggaggttttt
      661 tgctgcaagc attaggacta tattccactt tccaaatctt atatttaatt attaaatcat
      721 gcctgagggg agtacacacc aaaatcacag cagatgtctg actcaatggt gtgtttaaat
      781 aagaatggaa
//
LOCUS       KCLJ01001661             607 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 185642cal ultra-conserved element locus
            uce-3083, sequence.
ACCESSION   KCLJ01001661
VERSION     KCLJ01001661.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 607)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 607)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..607
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="185642cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>607
                     /note="ultra-conserved element locus uce-3083"
BASE COUNT          193 a          103 c          109 g          202 t
ORIGIN      
        1 tttttaattg accactttac aaataaaagt gaactacaca aaaattacgt ttttccacta
       61 tttaagggat tattaaatga ccttgtcaac tccaagagag aacccaatgt ttttcagtta
      121 gattttttcc ctgttgaaaa ttgcctgttg tttttaaaaa actggtccac tgaacttagc
      181 acagcctctg aggtctcagt gagaatccta tgattaatga ggtagccatt aatgtcagta
      241 gattgaacaa ctgaaatctg attatattaa agtgcttccc aaacattagg gtcacattaa
      301 cagtttattg aaacaagctg ataaaattta aaatggtcat ccaattcccg agggttccta
      361 attgttgcat gataaatcac tctgtagaga aatctattac aatgttccaa atgtgaaaat
      421 gttttactgt accattagtg gggtgtttga agcacatcag ttctttcatg ggggagtttt
      481 gccagaataa gacaaaactc tgtatatgga ggttttttct tttagattga gataatgcac
      541 gggccttgag ctgcttaaat tataaacatg agtcctctca tggactaatc atctgacagt
      601 gacttgc
//
LOCUS       KCLJ01001662             764 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 185751cal ultra-conserved element locus
            uce-6088, sequence.
ACCESSION   KCLJ01001662
VERSION     KCLJ01001662.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 764)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 764)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..764
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="185751cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>764
                     /note="ultra-conserved element locus uce-6088"
BASE COUNT          167 a          185 c          188 g          224 t
ORIGIN      
        1 ggaagcaggt tcagagtggc tctttcaagc agctttgaag agggaagagc tcctctcctc
       61 cttccccact gcccctgtgc cccagctcct tctccttgct gcctggcagc aaacagtgga
      121 tgctccgtgc attaacacta acacaatgct cctgggcgtg ctctgcgtgc aagtccctgg
      181 cagccctaaa ttaattaaaa gtagacagaa accctaggaa aaaagcaagt tcccttcctg
      241 cccctctgtt cctttctctc tctgtgggta aatagctaat tcctttgttc cttgctgcac
      301 tatttcattc ctgccatcat tgtcctcatt gttctctgga acaggagggg tctgggccag
      361 gagcagccaa ggtcttggct aatgacggga agtctttaaa gtttgcgctg catttcatct
      421 tctctgtggg agttttagga cgcatccagt gtttgatccc caccgtgcaa ctttgcttct
      481 agttaattaa cagatcccca ttacactctc tcatctgcaa gcacagggga ggcctatcag
      541 gaggtaattc aaggccaatc tgagtgatgg cagaaattag agaaaacggt tgttttaggg
      601 ttctaacatc tttacagagg tgccctgtaa atttgggctt gttttgttgt tgcaatcaga
      661 tctgtcgggg agtaggtggg aaagcagctt atttgtgttg ctgctgcttt gctgtgctgg
      721 cagcctgcat ggtgtatggt tttgagggcc agttgaaacg aaac
//
LOCUS       KCLJ01001663             419 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 185864cal ultra-conserved element locus
            uce-4259, sequence.
ACCESSION   KCLJ01001663
VERSION     KCLJ01001663.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 419)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 419)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..419
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="185864cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>419
                     /note="ultra-conserved element locus uce-4259"
BASE COUNT          119 a          105 c           78 g          117 t
ORIGIN      
        1 gtacaattta gctaataact ggttggggcc aatctttaac aagtcacata tttccattgt
       61 cccttcaccc cctgcttatg cttttaccac atcctaacaa aaacatgacc agaactggtg
      121 aaaaacatac ggttccaact aatgaatcac atactttccc gcaagtgcag taagtactac
      181 cagctgtgac agtcttgctt tggcagtgga accagtgcag aacaaggccg acacatctga
      241 aaccagctgt actgaaaaac cacaagcaat ttaagtccgt ctgccttctc aggggcttct
      301 ttgtctctgt ctatgtctct gctctgtccc taaaacttgc cagccatgtt gttttgacag
      361 agttcagagt ttcagaagtt tcaaggaaaa tccgctgatt caggaaactg cgtttcaag
//
LOCUS       KCLJ01001664             341 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 185969cal ultra-conserved element locus
            uce-803, sequence.
ACCESSION   KCLJ01001664
VERSION     KCLJ01001664.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 341)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 341)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..341
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="185969cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>341
                     /note="ultra-conserved element locus uce-803"
BASE COUNT           95 a           58 c           75 g          113 t
ORIGIN      
        1 ggggtgggtg ctggtgaaat tgtttttgct ttgtatttat ctttcagtgt tttccctatg
       61 tttgcataaa gtagaggcag actacaattt ggtgatgaat tctatgaata ctaatcttag
      121 gctacccttg accctagggt cagctaaaga tcaaaaccaa accatttaat attttccttt
      181 tgcagatcaa tagaagcata aattcactct caatgacaac tataatttca aacagatcta
      241 taggaggcat gcatgcattt ccaggatgag ctgctcatgt gcctgttggg gagcacaaga
      301 aaaggagttt ctctgttgtt gtgggtttgg gtaccattga a
//
LOCUS       KCLJ01001665             748 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 186073cal ultra-conserved element locus
            uce-3668, sequence.
ACCESSION   KCLJ01001665
VERSION     KCLJ01001665.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 748)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 748)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..748
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="186073cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>748
                     /note="ultra-conserved element locus uce-3668"
BASE COUNT          229 a          118 c          152 g          249 t
ORIGIN      
        1 agtctgttac taaagaattt taagatacag tggagatgtg aaaggcacag aagattttca
       61 tttcctgtgt tatagggtgc aaataatatc agtatgaaaa acctggcagg aagatttaag
      121 atagcagttt ttacattgat aagtatttgt tcatttcctg acaacaaaaa atataaatct
      181 cttcagaaat taaataccct ggcttgttga agcacttttg tgacgttctg tggtagactg
      241 gcttcctttc attggaaatc cacagctaga ataataatca cagcatcagt tattatactt
      301 gtatcagttc tgtgctgcaa gaggctaata cagtgtatgg ccgaattctc ctacttttgt
      361 gtcacttatt ttctctgtgg gccagatttg cattttaatg gaagtagttt atagacttct
      421 ttgctgcctt catagtgcca caagtggcat cattaagtga gttaagccgg attaatgctg
      481 atagtaaagt cagataatac aataacagag gccttcattt ccatttggat taggtgaaga
      541 gagcaggcct gtctggtgca gggtgataat ttgtaagcgc gatatgttgt acttgagagg
      601 ataagattaa atttagtggg tttaactgtc atcccagtaa gtcaattact tcatcttttc
      661 aggctttgaa tttattttat aaataaaata aatggaatat tgagctgctc cacagccatt
      721 tcgagcttcc atgaagaaga attacaca
//
LOCUS       KCLJ01001666             690 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 186186cal ultra-conserved element locus
            uce-7495, sequence.
ACCESSION   KCLJ01001666
VERSION     KCLJ01001666.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 690)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 690)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..690
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="186186cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>690
                     /note="ultra-conserved element locus uce-7495"
BASE COUNT          219 a          112 c          127 g          232 t
ORIGIN      
        1 agtgtgtgtc tcgcatattt atctcactct ttcactgaag gcatttaaaa ttttggcttg
       61 gctcatggat gtttgctctt ggtgttagtg taatgtccat acatctaatt gataagttat
      121 aatgcatttt tttgtagctt tgaccagtca tttaaaagaa ataagatcat aatgatcagt
      181 ttccatttac ccatttatta aataacaatg ttcacactga gcagtttgat tttgtgttac
      241 aataaggcag tctctacatg atgacagatg gtgtttcatt ttgccgacac tgtgctaaag
      301 tgctgtgagt tgtgatgtgt ttgattttat tagagatcag atttaacaca tgcattctac
      361 ataactgcaa tagcattccc atttctcatc tgtaggagaa aatgaaactg tgatgaaatg
      421 taatatactc accctcaggc agaactagtg ggattgggaa ttgcaacata ataaatctaa
      481 tggatattgc actacaggac actagaaatt tactgttatt atgttcaggg aaggaacttg
      541 gttttgtaaa actcgctttt atttcactgg catcagtgca atttcacatt atttaaccat
      601 tatatcccaa cagtttgctg cattgaaaaa gtaacctaag cccagaggaa cagaggagta
      661 aaagaactca aaaagacaaa gtctgaataa
//
LOCUS       KCLJ01001667             520 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 186295cal ultra-conserved element locus
            uce-2670, sequence.
ACCESSION   KCLJ01001667
VERSION     KCLJ01001667.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 520)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 520)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..520
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="186295cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>520
                     /note="ultra-conserved element locus uce-2670"
BASE COUNT          129 a          107 c          100 g          184 t
ORIGIN      
        1 gagcatttcc tcatggaagg cactgtggcc atgaatttcc agctttggaa gccattcctc
       61 ctcttgcctg ctgtcaatcc agagagtctc aaacttcatt tgcgctcatt tcacacagag
      121 tttgcttatc agcctgaaag gcgactgtct gatctttcct tttgcgtgct ttcactttta
      181 agatcttccc tttcttatgt aaaaaaggca attagagtcg tatctgttta ttttaaacaa
      241 aatggctgtt aattagcgtg atcaaaaacc ctgccattgt agactatggg cctcactttg
      301 tagtcttgct aaattgcata cagtttggtg ccagctgaca tgatagcaac acagagcctg
      361 ccaacttaat gaacaaacag atttatgagc ctttgttatc ttctggttta gatctatagg
      421 ttgggaatgc attatttaga gttcttgttt cttaatgact aatgtcatgt tgttacttat
      481 taagagtgct ttaacttgct ggagaagttt ccctcgcttt
//
LOCUS       KCLJ01001668             702 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 186406cal ultra-conserved element locus
            uce-6699, sequence.
ACCESSION   KCLJ01001668
VERSION     KCLJ01001668.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 702)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 702)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..702
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="186406cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>702
                     /note="ultra-conserved element locus uce-6699"
BASE COUNT          202 a          142 c          144 g          214 t
ORIGIN      
        1 actgttttcc ttgctgattt taaagcagta aatccttcca ttatttcctg gctatccaga
       61 ccttatgaca cagtatgtcc tgtgctgttg tatgtgtgag aaggcttttt atggggagca
      121 atcaggctgg accccaatct ccagtgcagt gtttttctaa ttaaattgtc agtggaagga
      181 atatccgcaa cagcagtttt cattttcaat cgaggaaaaa acattatgag tctttgtcat
      241 ttgattaaaa gttacttaac ctttaaattg ctacagatgt aaagatagct ctgagtatcc
      301 aatgtaatcg cctccaagtt aaaatcagga aaatctttgt gtaatgaaac ccatatgtca
      361 tagtgaaagg atgcaaagca ctggcagagt gggctgctct agcaggagat tctgcaccca
      421 atcttgttaa ccaggactgc ttttggtaat ccctcatctc ctcacttgta ggaaatcaat
      481 ctgtaccact gaatcttttc aaccagcaac tgtaaaattt actgcggaga gggagcttgg
      541 ggacaattgt agaaaaaatg gagcctgagg caacaaggct aagtgtggga ttgagggatt
      601 gaggttctaa agaggagatt atattaaacc ttattctact cccctatcaa gtggaaatat
      661 ctcttcctcc tttcagcccc agcctttcct atccagtacc tg
//
LOCUS       KCLJ01001669             561 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 186516cal ultra-conserved element locus
            uce-1581, sequence.
ACCESSION   KCLJ01001669
VERSION     KCLJ01001669.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 561)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 561)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..561
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="186516cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>561
                     /note="ultra-conserved element locus uce-1581"
BASE COUNT          181 a          118 c          115 g          147 t
ORIGIN      
        1 gcaggagtca tattgacacc ctagtgcatg gtaactctac tcctttattg acatgttgct
       61 agtcaggagc acaatagcac tctgtgtctg caaatcattg ctaaaatcat ctcaagaaaa
      121 aaaaagtttg aaagcccaac gcgagacaaa ggccccagag ctgcactgcg ccgctcaaaa
      181 ctcccgagtc agcaacttct attgattaaa aactaacctt taaagtaact cgcagagtgt
      241 gtggttagca tttaaattta aacatgtcat gagttgattt gtgttactga ataccaactc
      301 cgaaggagtt acattcacat cagatttttt ttctaattcc cttaagcagc taaagtattt
      361 catgaaatgt caatagggca ggggggaaaa aaaggtgttt tggagggagg ggactcgcgc
      421 ccagcctcgc cgtttctttt cccatgcaaa tagtcacccc aaaaagaaaa gtgtggggag
      481 cgacacacaa taattagacc tttgtctaac tttcccaagt gccagagaaa gacagattaa
      541 ttaaatatac aacagtgttg g
//
LOCUS       KCLJ01001670             580 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 186620cal ultra-conserved element locus
            uce-6048, sequence.
ACCESSION   KCLJ01001670
VERSION     KCLJ01001670.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 580)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 580)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..580
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="186620cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>580
                     /note="ultra-conserved element locus uce-6048"
BASE COUNT          169 a           96 c          104 g          211 t
ORIGIN      
        1 aagcagttca gcttttgttt agatggaact aaaagcaagg acagctatat catccctaca
       61 ataaacctag atcttagatg gttagttcat tttgtattgc ttataatgta tgggtacccc
      121 taatgattcc attagagttc aaataacaga attcagcaca aatgtatttc tactgagcag
      181 tggaaacaca atttctctgg aactgcagct gctgtagttg aagattagtc tcttactatc
      241 ccttagggag atgactgtct ctgccagctg acttagtttt tatactgcca gcgatttatt
      301 agattgcttt gctcttaagt gtgataatag gccttatgct tagcaaggtt tagagacttc
      361 cagtgcatta atattttatg gcaatgacag tcaagacaca ttttgtttac ctaacaagac
      421 aagccagatg atgtgtactg gagattagat ttaacatagg aactctgcca attatgtctt
      481 taatgctctg aaattatttt tataattgta atctaatatt tgatgcataa cattttgttt
      541 tttgtgtgac tcaagttttt actctgttct atctgtatat
//
LOCUS       KCLJ01001671             576 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 186731cal ultra-conserved element locus
            uce-4566, sequence.
ACCESSION   KCLJ01001671
VERSION     KCLJ01001671.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 576)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 576)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..576
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="186731cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>576
                     /note="ultra-conserved element locus uce-4566"
BASE COUNT          173 a          101 c          117 g          185 t
ORIGIN      
        1 atgaataaat atgcatatac aagggatggc tttgtacatg aagagctttt ctgctgcagc
       61 ttgttcacct ggttttagtg aaatcctttt ataatgaaaa cttgtcagtc catgctcatg
      121 gtttgattca gtacagcagt aatttaaaac tggtaaagag ttgtattttt atttgacagg
      181 ccggacctga tagacatgaa taccgttgct gttcaaagca acctcgcaaa tttagaacat
      241 gctttttttg tagcagaaaa acttggtgtt gccagacttc tggatcctga aggtaagaga
      301 tctacagatg gccccccaac actaaaataa aatccagtgg ttgtagctgt gggcattgtt
      361 acaactatgt gataaagcac tgttctgtct tgctctttta gatgtcgatg tttcctcacc
      421 tgacgaaaag tcagtaataa cttatgtgtc atcactttat gatgcatttc ccaaagtacc
      481 agaaggtggt gaaggcatca gtgcaaatgt aagtagaaca cttgtgtaca ttaataaaat
      541 tttgaatttc agatccagaa tgttagctag atcttc
//
LOCUS       KCLJ01001672             497 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 186840cal ultra-conserved element locus
            uce-3894, sequence.
ACCESSION   KCLJ01001672
VERSION     KCLJ01001672.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 497)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 497)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..497
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="186840cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>497
                     /note="ultra-conserved element locus uce-3894"
BASE COUNT          144 a           95 c           99 g          159 t
ORIGIN      
        1 aaaaccaagc tctggaagaa atgctctggt ggaaatttaa gcacaacctc agacttaaca
       61 aagagaccgg gagttgttag gctccttaga tgtgtgggaa acttgttgaa cgtttcttct
      121 ttgaaaatgg aacactatta ataatagttc cattgagcga tcttgccatc tgtgagacat
      181 taacccaaag accctccttc tcttttcagg ctggacaatt tgcttaatat ggcctatggc
      241 gtaaagaggt aattagaatt ccacagattg ccagatgtcc gtgttggcac agattggtgc
      301 tacaattttt ttttaattca ctaactttac caccagcatg tcaaattctt tttaagtttg
      361 gacttcagtt ggttttgtta cttttcacgc acaagttcat ttacaggtgg gcttctcaaa
      421 tggtttaggt gccacagctt aagtggtgcc agaatcaaaa ctattaactt gaaacaaatc
      481 tctgatctgg taatgaa
//
LOCUS       KCLJ01001673             519 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 186950cal ultra-conserved element locus
            uce-4513, sequence.
ACCESSION   KCLJ01001673
VERSION     KCLJ01001673.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 519)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 519)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..519
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="186950cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>519
                     /note="ultra-conserved element locus uce-4513"
BASE COUNT          176 a           88 c           95 g          160 t
ORIGIN      
        1 ttatatgcat gtgtcaaaaa ttaatatatg ggaaacttca ccaacagttt taagagaccc
       61 taaaatataa taaaatcaat aaatgatgtt ctggcataaa cgtttctgta gctgagggtg
      121 gtcaggttca aagggcagca tctgaccatt tctctttccc accctgctgc agagtaagac
      181 cctcccctca acttcaaatc actggggaga gggtaattta agctatactt gatgtaccct
      241 atacatcact gtcttcagga ccaggtttaa aattaaactc tgatgtacaa agttaaacaa
      301 aaatgagata aaaattggca ggggttgaag agggtcaaag tagtcaaaac acaaggtaga
      361 ctattgcttc ttttgattta tgttattctg tgcactaaaa aaataaaatt atagctcttg
      421 tggagacttt tttcattgag aataacacat ttctaatttg ttttctatag acttacaaac
      481 atttgctcta agagttggaa gcaactgttg gcagaatat
//
LOCUS       KCLJ01001674             608 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 187049cal ultra-conserved element locus
            uce-777, sequence.
ACCESSION   KCLJ01001674
VERSION     KCLJ01001674.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 608)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 608)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..608
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="187049cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>608
                     /note="ultra-conserved element locus uce-777"
BASE COUNT          202 a          105 c          130 g          171 t
ORIGIN      
        1 tttttcctct ctctacaaaa aatgacagaa agttaaagca acctaagaat cttctaaaat
       61 tttttgcagt ttcagaaact aggtagaaga atgcttttgt aatagatttc atgcagcagt
      121 tggcattggc agtactgcaa aaagagatgt attctgtcgt gctctgtttg atcaagtgct
      181 aaacccgtgt gatcaataga gagacagatg tcgggtgcag atggcgatgc cgtgatacct
      241 ggggcagagt gggcctgcca gaatgacaga atgggaacaa ggaagagcag caatgcaaca
      301 gaatgtgaca aatgaaatta gggtttatac tagtcgataa tttacagcta atagaaagtg
      361 acagaatttt tcagcataca gcacatttac tctcgcaata ctatagtcaa tgcatttttc
      421 atgcagaaca atgggagctg ctatgaagac ctggctctag ctatatgtat tttgttccat
      481 tgcaactggt gcaattgata tttaaacaaa gctagtaaca tcaaaccaag taagcaccaa
      541 gtgtatgaaa caagattgta ttttcaagtt tgaaatgagt ccatctgatt gtgtaccaga
      601 cctccaat
//
LOCUS       KCLJ01001675             815 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 187159cal ultra-conserved element locus
            uce-1904, sequence.
ACCESSION   KCLJ01001675
VERSION     KCLJ01001675.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 815)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 815)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..815
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="187159cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>815
                     /note="ultra-conserved element locus uce-1904"
BASE COUNT          248 a          143 c          173 g          251 t
ORIGIN      
        1 tttttcaaaa aggcaggcag gatttaactg ggtgtttttt tcttttaaaa cacttcaggt
       61 ctgttttcat gataggttca aaattctcag cagctatctt gttgtgtgac aagagtttac
      121 agcattagtt tcaccagaca aggactggtg gagtaaaatt agtcatgtat gtaaattata
      181 atcatgctga atagttgtat gtgctcattt agccatttta acagtgtgtg atgttatcct
      241 ctctgcagga ctaataagca ttagccataa tgaggtcagt cagtcagtca ggcattatca
      301 tgggatttaa ttgggacact ggtctctgct gaagtgaaaa ttaataactt ttgtcaatgt
      361 tctggtgaaa tgttctgtct tattaaacta tgagggtcaa ttagaaagca ttatgtaata
      421 aagtccccag cagcagaact caaattgagt tataccacag tcattattcc aggacgattg
      481 catttgaaaa tggaaaacca gcatgccata tggagggcgc aggttatatt tacaagcatt
      541 gcatgttaaa gcttcggcaa gaaggaaaca attaaatgta atactgaaat aaatcaaagc
      601 actgaaagtg ccatgttgtg ccaggcgctt aatatagcca gcatacccct agatgcagct
      661 aggcaaaatg gcacctgttt ataagccttg tttgggttct gtcagacaac gtcctccctc
      721 tggattgctc cgatgattca aagtctgggg cacatctgga aggctcagcc aggcacattg
      781 actcatataa ataacagttt attgtatggc tatta
//
LOCUS       KCLJ01001676             743 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 187272cal ultra-conserved element locus
            uce-7576, sequence.
ACCESSION   KCLJ01001676
VERSION     KCLJ01001676.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 743)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 743)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..743
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="187272cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>743
                     /note="ultra-conserved element locus uce-7576"
BASE COUNT          221 a          159 c          135 g          228 t
ORIGIN      
        1 aaaggtaaag aggaaaaaag tgttgtttat agaagccagc tgctctggct tcggcgccag
       61 cagctcctca tcctgctatt ttacactcgc aacccccact gcccccactg gcacaggtac
      121 aactaaatgt tgacttcaat gcttcagaga gcactcaact gattctgtac atgattaatt
      181 gccaaagaca tggctgacca tatggaacag agaaagcatc aagtaattca tacttctgta
      241 tatgatcatt tggcccctgt tgttttaatg tacaggaaag agctagtata gcacagacct
      301 ggtgtcttgc ccttgacagc ccattaagaa atctcaaagc acctagttga agttatgctg
      361 ttggcttttc aatagcagcc taataaaaca gaagcaaagc tttccaacta gtcttaaatc
      421 tttcacatac agtacattaa ccactgctgc tacaacaact ggtttcttat gataggaaat
      481 gggatttgat ttctagcctc tgcatactta ctgaaagact ttttctgacc tttggagggt
      541 ttacaaaatc attgttcgtt tttcctgcca ttttcccagt ttcttgccat ggtgatccta
      601 atagatttgt ttaaggttca gtacattcta ctcttactag ctgttatatg caaactgtgc
      661 aatgaaggta agctcatggg aactgaaagc aaagaaatta ttattttctt tctgatattc
      721 agaaaagtca ctgcaacatc taa
//
LOCUS       KCLJ01001677             697 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 187381cal ultra-conserved element locus
            uce-7370, sequence.
ACCESSION   KCLJ01001677
VERSION     KCLJ01001677.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 697)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 697)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..697
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="187381cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>697
                     /note="ultra-conserved element locus uce-7370"
BASE COUNT          216 a          142 c          107 g          232 t
ORIGIN      
        1 atgtttatgg aggtttcttt ctgagggctg atctgtgctt ctagttcaag tcctctcaca
       61 aatttgaaca agttctgcat cttccaaatt gccccatata agttactact gaaaccacat
      121 ccaaatttct ccaccatacc ttccacagaa atgacctaaa ctttgtcagg ttcacatgtc
      181 cctagagatg atctcatttc actgcttcaa aagagctttg gtctgcacag cctgtagcag
      241 caaatttaca cttcaaaaag cagacagctt tttccacatc ttattcactt aatgggtgag
      301 aatgtaaaat tagttccgtt gctgatgagg accttgagcc aaatgaaaag tgttcatttg
      361 tcagcacaga cttacagcct aaaacatgat tatataggta atccaataat ggattttgat
      421 gctgagcatt tatttatata cagaatgtct tgttatctgt tgataatcag gctctacaat
      481 ttactctctt ttgtgtcatt agccatagca acatcttcca gacatattac atttgtgtgt
      541 caacatacaa acacacatcc tgaccaaaat gctatctttg ccatcactgg aatttgagct
      601 tttaaaatat tagtaggaaa tgaatcatga gaacatctct gcatcttaga agtcttaata
      661 gattaaaata tgaaacataa attttgtttc cttatct
//
LOCUS       KCLJ01001678             455 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 187492cal ultra-conserved element locus
            uce-4609, sequence.
ACCESSION   KCLJ01001678
VERSION     KCLJ01001678.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 455)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 455)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..455
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="187492cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>455
                     /note="ultra-conserved element locus uce-4609"
BASE COUNT          150 a           97 c           87 g          121 t
ORIGIN      
        1 cttagtgaag gagacgtgtc ttacactttg ctaacattat agccagattt cacggtcatg
       61 ggaaaacaaa acaccccaaa tggagcagtt attaattcaa taaatccagc tgctttcagt
      121 gctctgggca aaaggcaaag ttaaaagcag ctgcttgttg acgacatgtg cgacctgacc
      181 aggggaaggt agctgtttta gcacatcatc caccactttg aaggctgact gcactcaatt
      241 tcttagacaa tctacacacc attttcagtt ctgtaccacc ataatttatc acaacaatac
      301 ctcaagcata cagattcagg gtgggggatg aaagcaattt acagtataaa gatgaaagaa
      361 gctggatggc tcaagaagac ctactatgta aatcatatcc accacttaaa ggaatgtagc
      421 cataatattc tggaattaat ttttccagca ttcct
//
LOCUS       KCLJ01001679             703 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 187600cal ultra-conserved element locus
            uce-5810, sequence.
ACCESSION   KCLJ01001679
VERSION     KCLJ01001679.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 703)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 703)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..703
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="187600cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>703
                     /note="ultra-conserved element locus uce-5810"
BASE COUNT          232 a          139 c          133 g          199 t
ORIGIN      
        1 tcagaaatgg aaagtaggca aatatagact gtagtaagct tttaaagtaa taacgtttaa
       61 tcccctcctc agggccatgt ggtttccagt gtacacaaag taaagagtga aaaggtaaaa
      121 ataaaacagg cataccctta atatattcca gaattcataa atcatttgta aatttagtcc
      181 ttttataaaa gaatccttat ataaattggg gggagggagg gcatcaatcc catatatgaa
      241 gcacaattaa agcccaacat cactgaccaa tcaaaattag tgaatgcact gcatctctct
      301 gcagtgagga gaagcgacaa ggtaggctgt cattctgcaa aagctgccca tcgcaagctt
      361 tcctctcaga agcactgctc ttctttttta gaaagcctga atctcagtgg tgtctctgga
      421 gacaagaagc cttcagtatg ttaaattact ttcattatgt attttcagat gcttattgat
      481 tctaccgtag gaagagtggg agactgcagc agcctgtaaa ccagaactaa agcaattgta
      541 tacatgagca gtatgctgaa acaatggcac agtacaggca caaattttca ttaaggtcat
      601 tttttgaaga tatgcttatt accctgtttc ccttctactc tgctaacaag tgaacaaaat
      661 gaatcccttc aacctggaac tgcttcacct gcatcgagaa ttt
//
LOCUS       KCLJ01001680            1049 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 187707cal ultra-conserved element locus
            uce-1278, sequence.
ACCESSION   KCLJ01001680
VERSION     KCLJ01001680.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 1049)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1049)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1049
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="187707cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>1049
                     /note="ultra-conserved element locus uce-1278"
BASE COUNT          289 a          191 c          201 g          368 t
ORIGIN      
        1 ttaatttgat aaactaaatt caggatatgg gaggaggggg gaaatccata ttgaatctca
       61 caaggaccac accttacatt tttgcattta tgagagtgct tctgctacct gtgcagcaag
      121 agttaaaaaa ttttagaaag atttttctgc atttgaattt aaagtgctga accagtgaat
      181 actgtcagat aagtaaaaat cgtttgtgct ttgttgtttt tctttttgtg tctccttaat
      241 gctttattgt ggtcttaagt cccttttagc atttgcataa agttcacgat agatccctct
      301 ttaatgacgt gccgatcatt agatacctgt gtgtcaataa catgctctga tgctatgttc
      361 cattgacagt cacaccgtgc ccctccatct gcttttgttt tgaccctatc tttgaacttt
      421 atcttggttg ctggccagta gttttccctt taattacaag aaggaaactg tcaataaaat
      481 ctgttaaatg ggatgcaatg agtggcttga atgggcggac ggctatttgt tcaaattctg
      541 cagcattcaa ggtattgaca gtttgttttc tggggccata tgtgacgatc aatctcaggc
      601 tgggctcagc cgcgctgaaa aatgaaaaac cagattgctt ttgcttactt gtggatgacg
      661 acttgtgatt tggcgcggtc ctagtgagat gagaccttct gcccaaattg cccccctgag
      721 agccgggacg cgtgactgtt tttagaaata attttttaat tgattttgta attaacagtt
      781 catctacaat attgatgcat gagtcctcgg attgatagga gggaaattgt tttcaacaat
      841 gaagttgtac tttcctattt atctttgtaa tgtgatttag cactctgcat ttttaattgg
      901 aaatataatt ccaaagccaa aatgcttatt agtttctttg taaatattct ccaccccact
      961 aactctgccc ttaattttag aatattatct tattccagaa acaaaatact gaaatgcctc
     1021 tcaaagatca aaattattcc taattgaag
//
LOCUS       KCLJ01001681             758 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 187816cal ultra-conserved element locus
            uce-2079, sequence.
ACCESSION   KCLJ01001681
VERSION     KCLJ01001681.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 758)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 758)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..758
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="187816cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>758
                     /note="ultra-conserved element locus uce-2079"
BASE COUNT          208 a          157 c          149 g          244 t
ORIGIN      
        1 tggctgctcc agcaagtgtc agagtaagca aagaaacctt gactccccaa tcaaacttac
       61 ataaactttg cacaccattc ttggacgttt tcattcttgg ctcacattca tgcagcagaa
      121 ttatttagat gagttccaat ttccccagtt tggaatggga gggaaaatgt atggcgctgc
      181 caggcagaag attatatctt cgttttggtg gaggtttcaa gctcttcaga gagcctctgg
      241 ttgtggctgt cactctctgc cacactgaga ggttttttta ttgtccctgt cagttagcag
      301 cccaaggtta ctgccagctc tctgtcagtg ctttgatttt tgtcagctat ggccaggtcc
      361 ttttagttat ctgctatctt ttcagctttg ttcagcctga gctctacttg tctactaatt
      421 agctctttgg agatttccct tttaaaactc actatcacag aggacaggaa ccgttcaaaa
      481 gttttgtgct tcatagaaat tccatattca tccacatccc atacagccat ctttttaaaa
      541 ttaaaagtgg caggtcaggc caatttaagg tatataagca gcacagcctg taaaaagata
      601 cctttaggtt cttgatcagg tatgtagatg aatgacagaa aaagaaaatg gtttccactg
      661 aaaggaccaa ggtgtacaaa taaaaaagaa actatcattc tgtgtaacat attctcattt
      721 tctttatctt ctggtgtgca aatattgtgc tagctgaa
//
LOCUS       KCLJ01001682             578 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 187927cal ultra-conserved element locus
            uce-362, sequence.
ACCESSION   KCLJ01001682
VERSION     KCLJ01001682.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 578)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 578)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..578
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="187927cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>578
                     /note="ultra-conserved element locus uce-362"
BASE COUNT          200 a           88 c           93 g          197 t
ORIGIN      
        1 tttctaagaa gtttcaatcg ctaaaaagta tcctaatcat atatatctga aactgattaa
       61 aaaaaatcaa caaaatgaaa caaattgctc ataaatcaca ttaataagtg gggttttaac
      121 tatctgtagc atgtagaata ttaacatctg atgtgcctat gaatagtcat tcctactagt
      181 atacattaaa tgttgtaatt ggtttaaatc agcataggcc atctgtcttt aatactctta
      241 ttacaaggca gtaagcagag aactattaga gctgcagtat aagctgtaag atctttaccc
      301 gttcttaaat catttaaaaa taatgagagc tttagccttt atctaattaa cgagtgcctt
      361 ctttgaatta gaaaaactgt atcatttagc ccacggttgt ttagtaaatt ggcttggtgg
      421 catgtaagct aatgcagggt agcagttgca gtgtcttgtt cctggcttct tattacttga
      481 attataattc aatgatcacc ttagatcatg ggctattcat aaatcagaag cctgacatca
      541 gatgaaaaat tgtattaata tatgaaactt attatata
//
LOCUS       KCLJ01001683             682 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 188034cal ultra-conserved element locus
            uce-5296, sequence.
ACCESSION   KCLJ01001683
VERSION     KCLJ01001683.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 682)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 682)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..682
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="188034cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>682
                     /note="ultra-conserved element locus uce-5296"
BASE COUNT          221 a          107 c          128 g          226 t
ORIGIN      
        1 tttttttctt atggaaagta tttacatgtt tattttaagc ctaacataaa tgtaaatatt
       61 ttaaacaaac aaaaacacac cagggtaaca atagagtatt gtttttttat gttgaataaa
      121 aactgccagg acagtgcatg tatattttta aacatgctgc ttcaaaaagc aggatgcaag
      181 ggatgttgca tctttaattt ttctgttaat tatggattga gcattgttgt gagccttgtc
      241 ctcaaaaccc agctcagaaa ataagagcag atgctcatac ccaggtttgg ctcatgtggg
      301 aattgaacag aacatattgg tttataatta atgtaatttg ttggattatc ttttgtgaag
      361 gagctaaggt aaacaacctt gcagcattgt agtgaaattc ttctgtgctc agagcctcta
      421 tacttgatgg aagatgaccc tacccttcct cctggactgt gggaagattt ggaaatgtct
      481 gtcacattca aacatatttt aattaactca aaggaaagaa ttaggctaca gaccctaaag
      541 caaattacaa atagtgttta aaatcagagc taatgattcc ccaattgact attctgatta
      601 acaaaattct cttttcgagt ttgctgtaat tttgttatgg ggcaaggatg gagaaagaac
      661 atgcttttct gccctgaaaa tg
//
LOCUS       KCLJ01001684             911 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 188143cal ultra-conserved element locus
            uce-783, sequence.
ACCESSION   KCLJ01001684
VERSION     KCLJ01001684.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 911)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 911)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..911
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="188143cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>911
                     /note="ultra-conserved element locus uce-783"
BASE COUNT          270 a          178 c          189 g          274 t
ORIGIN      
        1 aactcagaaa gactatttgg aaaggttccc atcgaagtga ttttctgcag atagctcata
       61 ggtgatcagg atacccactg cttcagcact tcaaatattt atcatatata tgtttgcttg
      121 aatcttgata agggtgagat ttgggactta tggacactga gataggatgt cacctgagac
      181 attcatctga ttctgaatgc agacagaagg aaagtgccta ggagaggcca ggagagagta
      241 agggatacta cgaatggaca gcccttgttc ccagctctaa tatcccgctg caattatttt
      301 gtggacatcc actccttgcc tgcacaggag atagggctat aagtgtatgt tattttttaa
      361 ttacaagggg gtagaaaaaa tcctgatgat gggctggaag gtgccattgc attgttattt
      421 ttttctctcc cttcgtttgc tgattatgtg agctgggctc ctttgctagc cgatgataag
      481 cagaatttcc atgttctctg cataattaat ccatctctgc ctctcttcat gccaactcgc
      541 ccgttatcgc cggcacatgc ctgaattgca aaagaatccg ctcttcaatt ggaacttatt
      601 gatattctaa gaaaaaaaag agggggaaaa aactgaaaat ccttaagttt aagccgcaga
      661 tttttaaatg gattaatttc gctgcaatcg cagccatcta aggcgggaag gcaggcagag
      721 caaattgaaa gcatctccat gtttgcagaa ttgggtccag aatgctgaaa tatactggca
      781 cagttctctt ttaaagtcag aaaattacca ttcatttaca tcacatgaaa tactttttta
      841 tgctagaaat attcaagaga cgttccttaa atgcctgcta atgctagata acatttctaa
      901 ctttcaacat t
//
LOCUS       KCLJ01001685             871 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 188255cal ultra-conserved element locus
            uce-1660, sequence.
ACCESSION   KCLJ01001685
VERSION     KCLJ01001685.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 871)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 871)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..871
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="188255cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>871
                     /note="ultra-conserved element locus uce-1660"
BASE COUNT          276 a          157 c          135 g          303 t
ORIGIN      
        1 agctgagtta taaacccctg aaaaacagga tttataatgg aaatgctgac acaaccttaa
       61 ccatagcact gctatctggt gctactataa tatactgtac gaagaaatca gttcattagt
      121 tagttataaa caaaggacag agatagtaaa ttacagtagg tattttctat atatttatga
      181 cacaaaaata tgcagctgca ttttatttct tgagacagta tttaaagatt tcagatttaa
      241 tacacttagt ttggttatgc acattgtgca ttttggtctt gctgttcctt cttgtagttt
      301 tattcatggt attttcttct ttctctgttg ctcattagaa aaatgttaaa aatccatttt
      361 catctgatta ataataaagc tgatcacatg taacctaatt ttcattcact gctgcccctg
      421 tctgtggagt catatacaaa gtgacctttg aatcaccact gggcccataa agcacaataa
      481 gcaccattgt cctgtcaaaa attgaagatg ttttacatca ttacaaaatt taatgttcca
      541 tcttttcaaa tgcactactt ttcaaaggcc acattccaat tgaagctcat taaaatcaga
      601 ctcaagtttc ctgtggtggg gatgagaaag agtttctcat gcattcggag taatatgaat
      661 cactctttta aaacagatat ggttacatat tagttttgaa aggtacagta actgctgagc
      721 ctccactgtc tgcaacagtg aggcttttgt acttataaat ctaataactg cctcctgatc
      781 ccttgtactt catccacact gtatcctatt tacttatgaa taaatcaact ttctaaataa
      841 aattgttgtt caaaagttca ggggttgaat t
//
LOCUS       KCLJ01001686             509 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 188362cal ultra-conserved element locus
            uce-5617, sequence.
ACCESSION   KCLJ01001686
VERSION     KCLJ01001686.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 509)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 509)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..509
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="188362cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>509
                     /note="ultra-conserved element locus uce-5617"
BASE COUNT          190 a           85 c          104 g          130 t
ORIGIN      
        1 agcctctggt atcatgtttt tttttcctca aaagcatccc tccattcaga acacttttta
       61 aaggagacag gaaacaggtc atttttatac acgaaattta acatctactg tgtctatgga
      121 taacaggttc tgaggcgaac tgctgagtgt gtcacagtaa acctggcaga gttaagtgtg
      181 gaaagtcagt ctgagcacat gctgtaatgg atttgacctc caagagcact gcaaagagaa
      241 attgcagata accatctgaa ctgacttcag aagccctgac tccctggata ccaagagaaa
      301 agagaaggac taaatatata gagggaacaa tcagaaatac aaggttgaat aaatgcttaa
      361 tatttgaaga gttgacagta aaaagcagta catttccatg cttgattaca accaagtaag
      421 gataaaattc cttaagaaaa ggtaagatat atattcaata gaagtgagaa tataggaaca
      481 ataaagacat gcagctgaga aagtcttaa
//
LOCUS       KCLJ01001687             587 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 188467cal ultra-conserved element locus
            uce-7886, sequence.
ACCESSION   KCLJ01001687
VERSION     KCLJ01001687.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 587)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 587)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..587
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="188467cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>587
                     /note="ultra-conserved element locus uce-7886"
BASE COUNT          195 a           96 c           87 g          209 t
ORIGIN      
        1 agtctttata atagtgtatt acatggctgg agtgaaattg agtcttcaaa gaacgtgtta
       61 ataggatgca ataatggtaa catattttga tgggtttgga accaagactt gggaagtggt
      121 ttgccccctc tgcaatccag gttcttcttt atcttgacaa cgctgtgtaa aacaaagaca
      181 tagcttttaa aactgtctaa ctaatatgat gaatgtcaat cacttaaaaa actccactgt
      241 agcataaaca catactgtat acagctttta ttctgaatta gaataattga atcaatgaca
      301 gtgatttgcc aggatgtcaa atctatccat catatcctgt cactaccagt ttattttttg
      361 tgatcaaaat caaaaagact actattttgt catcagctat ttcattagta gtaacaatca
      421 ggttttctct tctatatttt ttagatatgc ctgttatatt ttttatttct aaagacacaa
      481 atccttttaa aatcttttca aaataaagtt tcagaactga actgtcagtt tagtgaagaa
      541 aaagacatct gctttcctat gccaacatat ttaaaatatt atcattg
//
LOCUS       KCLJ01001688             550 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 188575cal ultra-conserved element locus
            uce-2534, sequence.
ACCESSION   KCLJ01001688
VERSION     KCLJ01001688.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 550)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 550)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..550
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="188575cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>550
                     /note="ultra-conserved element locus uce-2534"
BASE COUNT          155 a           99 c          115 g          181 t
ORIGIN      
        1 tatttctcag accagttgct ccttgaaatg tgtttctgct ttacaacatc acttatgcct
       61 aaggaaaaat tcattcttgg ttgtttgtca gtggatttgt tgtagtttcc tcgtggtctt
      121 tagtggagga agtaagtgac agtgatcagt gaaggtggac agtaagattt ataatgtatt
      181 tgtgctagct gattgccaac agaactggcc tttcccagcg gtgctgtacg cgtacttgga
      241 aaatcaatag ggattagcct atgaccccct tcacatactt atactgtggt ctgcattgct
      301 taccaatatt tcatctgttt cacttaaatg ctggtactta ctcaataatg tgtggctgtt
      361 cttgcaagct actaattaat ttttaaaatg cagtatcact tgaaacagag ataaagcaca
      421 cctttagcat cagagggaga gcagggcagc ggatttgtga atttgcactt ggccctgctt
      481 agagagttat atattcagat taaaaagtac taaatcaagt agagaaacat tttcgccaac
      541 aagcttaatt
//
LOCUS       KCLJ01001689             216 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 188682cal ultra-conserved element locus
            uce-4875, sequence.
ACCESSION   KCLJ01001689
VERSION     KCLJ01001689.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 216)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 216)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..216
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="188682cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>216
                     /note="ultra-conserved element locus uce-4875"
BASE COUNT           49 a           63 c           58 g           46 t
ORIGIN      
        1 cccctgcttt gggggccaag gttggagctc agtgcccagg gaaaagtgac cttcaggctc
       61 ccccaggcgt gacagatttg gctgtaaatc tccagatgaa tgcccaggtt cccaaggtct
      121 gtcatcctgc ctggcacgtg agctgctcag aaacagcctg caggctcatc actcattggg
      181 gacaacaaac tcacctgagg aaccttatgt ctcagg
//
LOCUS       KCLJ01001690             390 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 188783cal ultra-conserved element locus
            uce-6418, sequence.
ACCESSION   KCLJ01001690
VERSION     KCLJ01001690.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 390)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 390)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..390
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="188783cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>390
                     /note="ultra-conserved element locus uce-6418"
BASE COUNT          127 a           67 c           70 g          126 t
ORIGIN      
        1 catacagatg tctgcagaaa ggttattgct gccagctttt tccaatgtgc caaataatct
       61 ttgtataatt tataaatgat aacaaagcaa tcaggccaca ttcataaaag cccagtgaca
      121 cataatttag ctgaatctga ggattacaat taattgtctc tttgttccca gttctaaatc
      181 ttagtaaatg attcactgca tgtcattaca gcttaatatt tgcatgaaat cgcagtttaa
      241 ctggcataat ttaacagcaa ttaaaaagct atttaatcct catgcaaatt ggcatgaggg
      301 gccttgagta tgaagtgtgt tcgtgggtgc aagaggacag tctttaagac acttctaaca
      361 ttattgatag ttttcactga aatgcgaatg
//
LOCUS       KCLJ01001691             586 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 188888cal ultra-conserved element locus
            uce-1650, sequence.
ACCESSION   KCLJ01001691
VERSION     KCLJ01001691.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 586)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 586)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..586
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="188888cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>586
                     /note="ultra-conserved element locus uce-1650"
BASE COUNT          150 a          151 c          130 g          155 t
ORIGIN      
        1 cggggcgggg tagcggcgcc ttttctcccc ggcggctcgg agaggtgggc cggggctttc
       61 agaggggctg acagatctga agttttggag gctgaatgaa agaaacactc agctaacaaa
      121 acagtgcgcc acagaagaag tttcatctgg tctggccaaa tccctccttt ctttccatct
      181 tttctctcct aataacagct gccctctcat tccctgttac tccgctgtga agaacaaaac
      241 ctccctctga ctatctgttt ttcttttctt ccccagagta ggtctcatta ctggtgatta
      301 gcagatgatt aaaaccaatt cagcttcccc cagtagatat tttctccctg tttgtgacta
      361 acgcgtcagt cttcaatgaa cgtgctccta agcttattaa cgggctcaga ggattagctg
      421 ccaccgagcg ccgccactcc gatattgtga tgcagcgagt gacatggaac catttgctga
      481 gcgcaggcag ggccgctggg accaaatatc taaatcacaa tttggaaatc ccaacaataa
      541 ttaaaaaatc aaacgtttgg ccaagtctga aaatagcatt aaactt
//
LOCUS       KCLJ01001692             666 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 188998cal ultra-conserved element locus
            uce-1063, sequence.
ACCESSION   KCLJ01001692
VERSION     KCLJ01001692.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 666)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 666)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..666
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="188998cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>666
                     /note="ultra-conserved element locus uce-1063"
BASE COUNT          181 a          133 c          152 g          200 t
ORIGIN      
        1 ggaaaggagc atctggaacc catcatgcct gttagtggtg ctgctcggtg gctctttggt
       61 gtgaggctct tttggcctgt cctgtgcagg agccgagcgc tgctcgcagt ccgtcgctgc
      121 gcctgacctg ctattaattt gaagtagtgg aattaaaatt ttccattctt ttgcattgtc
      181 atgcctcacg ttgataagca caaagaaatg taaataaaaa agacctattt cacaacccta
      241 gctacaacct ttttgtttta tgacaaaaga cagttaatta gcatactagc agtaagcagc
      301 cttcccaaac tcgtgctaat tatgtattct gttgaccgtg actccagtca taaggtaatt
      361 ggcttgcagc aacatgacat ttcaaatcat ctcttgaaat tacatcaaaa agccagcctg
      421 ttttgttttg ataggggaac aatcaatttg ataagtggta acacagctca ttgtttcaca
      481 ttaattagac taattgcagc atgttagcct ctgaaataga cagaacttgg agaagacaaa
      541 ggctgtggcc tttagcatgc agtgcatgtg gtggttccac ttgcttgcac atactgtagg
      601 cagaaaacag agttgttagg attcagcctt gcgggagact gggtgttaac agtggtttga
      661 tgtgtt
//
LOCUS       KCLJ01001693             805 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 189109cal ultra-conserved element locus
            uce-5438, sequence.
ACCESSION   KCLJ01001693
VERSION     KCLJ01001693.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 805)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 805)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..805
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="189109cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>805
                     /note="ultra-conserved element locus uce-5438"
BASE COUNT          236 a          167 c          156 g          246 t
ORIGIN      
        1 agacttcatt catgtaggat gaagattcct ctctctgcaa aacagacata agcattgcat
       61 taaacttgcg ccaccccttg aaacatttta aaggctgtca ggaagcagac tgacaagaga
      121 tgctacctgt ccatttgccc aggaaagtga gcagcatgga ttcccctgca ggtttggact
      181 tgtccagaga aaggacaagt gatcgccatc tcctcaaatg cttcaaagat tatagcatgg
      241 attagtcagt ctcagcagac tttgaaaagc ctttgtcatc catcagaagt gcttcccttc
      301 gtgccaggca gtgccgttgt tttgtaatga acaacttcca tcagagtgca caatttctca
      361 ttctgtctga ctctgctgat cattcttgta attaagcctc ttttgattcc ctttggcagc
      421 acaccatctg cacaagaagg cacacctgga aagcagtttt ctttttctat ccttgattaa
      481 actctgtttt aaagcagaga accttaatca aaagaagtgc ctgagtggag gtatctgtgc
      541 ctgtctcgct tttgtcacag attccctctg aagtctgcag gatttagatt tgcataacaa
      601 tttccaggtg tccacagtag aggggtaaca ttttcagtcc agtggtatga attgaagatg
      661 aaaataacag ggtaccatag gaattgaatt ggtattaatt actataaatt cctattgaat
      721 ctattaaaaa aatctttact atttgcagtg ttattttatg actcacaata atctcattcc
      781 tgagtgagtt caagaaaatg taaaa
//
LOCUS       KCLJ01001694             733 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 189220cal ultra-conserved element locus
            uce-7889, sequence.
ACCESSION   KCLJ01001694
VERSION     KCLJ01001694.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 733)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 733)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..733
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="189220cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>733
                     /note="ultra-conserved element locus uce-7889"
BASE COUNT          192 a          171 c          137 g          233 t
ORIGIN      
        1 ttaggcattt ctgcctctcg ccatagcttt gtgcaataat catggcactt tggttagcaa
       61 gcctgtgagc acagagcagg agcgtagtag tcaagcacca tttgctattt tcctcttagc
      121 tgtgcagaca tgttgaagta atgatcctgg caacatgtta gcaaaacatt agaaagactt
      181 tagtaagcaa ataatttaat tacatccttt ttttatattg caagacccct gaccttctat
      241 attgctgtac ctaaactcag catgggattc acacttccca ttcctgtcac agaatctctc
      301 catcttgtac catttaatat agtgtgctcc aggtgttctg tggtgaatga atagttatat
      361 tactacctgt cagacacaat cacactctat tcatcatccg cggctggctg cgtgaagcct
      421 tgcttccagc aggctccctc tctatttcct tgttcaaacg tctgcagtgc tttcggccca
      481 tctgtcaagc ctgtcattta gagggaaaac agtatcagcg ctttaaatat atggagttct
      541 ctattgaaac agtgctgtga ttgaactgtc agcattccca gtatcacaga cagtaattca
      601 tgactggtca gagctccatt taggttccta ttaccacgct gaccttgctg ggtcatactg
      661 agagattttt ccctctgcag ttaggtctat aaatagtgca attaaccttt caagaactac
      721 aaaatgttct cag
//
LOCUS       KCLJ01001695             344 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 189331cal ultra-conserved element locus
            uce-2752, sequence.
ACCESSION   KCLJ01001695
VERSION     KCLJ01001695.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 344)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 344)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..344
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="189331cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>344
                     /note="ultra-conserved element locus uce-2752"
BASE COUNT           89 a           78 c          111 g           66 t
ORIGIN      
        1 ctccagcaag gctgatggat atgcagagta tgttaagaag cgagcaatac tgtcactgag
       61 ctgatggtgc tcagtgactc ctcgggcttc tggctggtct gtactgcagg agcttgacac
      121 cctgaccact gaggcataaa aaacagagaa ttggaagcct cagcctgaca ggcactagag
      181 catcccccag agagggtcca cgatgtgtgt ctgtgtgtga gtgtggggag gagggcagtg
      241 gggatggtgg gggaggaggg caagacagga gaggatgaaa caatgaaatg tcagcccatt
      301 cccacccaca gccctgctgc agcagtgata aacgtgctac tgcc
//
LOCUS       KCLJ01001696             737 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 189436cal ultra-conserved element locus
            uce-55, sequence.
ACCESSION   KCLJ01001696
VERSION     KCLJ01001696.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 737)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 737)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..737
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="189436cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>737
                     /note="ultra-conserved element locus uce-55"
BASE COUNT          242 a          149 c          127 g          219 t
ORIGIN      
        1 tagaacaact agttcccatt agcatgagtg acagtggtgc tcgttcaaat cccatgtatg
       61 gtgatggaat acggactccg aaatctctgt gaccttgacg tgtaatattt atgtctacac
      121 ctttagcctc ttgtgcataa tgagatgcaa tcttttagct ttatgcactt caccaggcat
      181 tcaattagaa ataggatggg gaagaatgct aagctactta gacagaaggt agtgaatcaa
      241 aaattgcaaa acttgagctt tcaaaaatag cctgagtgac ctcttccaat actctgacca
      301 ctccatcaca agcaggaggc aacccctgtg aagagcgaat tctggcaaag ttctctcttc
      361 acagatgatg cacagcttaa gctataatga gtttttgggt tacaaatgct gaacgcatta
      421 atattccttg atgataatta tcacagtata agcacctttc ccaatgtgag tagcataaag
      481 caactgaagc agcattttta ctacatttga aacaagctgg aaaatgggat tttctactct
      541 tgtaacctga ggtcaagata catcaagcta tgcatattaa gtatgtctac cctatataac
      601 tatatagact tttccatata ttcacacaca tgcatgcaat taacacctta acaaatatgc
      661 catgcatatg aacatgattt ctcaagtttt aaagaagact caaataattt tcaaacaggc
      721 tacactgata tttcttc
//
LOCUS       KCLJ01001697             584 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 189547cal ultra-conserved element locus
            uce-462, sequence.
ACCESSION   KCLJ01001697
VERSION     KCLJ01001697.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 584)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 584)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..584
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="189547cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>584
                     /note="ultra-conserved element locus uce-462"
BASE COUNT          161 a           93 c          129 g          201 t
ORIGIN      
        1 aagttgtagc ttcactttaa tctgttttat gtagcaagtc atgtttagga agtatagttg
       61 ggttaaatca gaaatttctc tcgactatgt gaggttcagt ttttttgagg tgtaacagtg
      121 ttcctttctc ttttgcagct atgttcatta gaaataaatt cacattgggt tcatatccgt
      181 atacccttca tggtgaacaa atattttgtg tctacttaat ttctgactac aaagttgtga
      241 taatattaga tttgggcttg ctgtgcataa agtgtgtcaa acttcagcta cagaccaggg
      301 ggtgaagttg gtcaatttaa ttcgccaaga tctaaagaag gtcggtatca tttcatatag
      361 ccctggcaga gcagatcatt accagacaca aatctgttcg ttacatgccg agggtttata
      421 gcaaaataaa tagactgtca tcataagttc agaaaattgt gtgttcgacc cacgataatg
      481 tgtaaagggc gtttaataga gttcagcatt tattcgttat ctatatgcgg acagagacgg
      541 cggtggcgtt atcagctttt ttcggtagtt ttgggtcacg tgag
//
LOCUS       KCLJ01001698             741 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 189652cal ultra-conserved element locus
            uce-2210, sequence.
ACCESSION   KCLJ01001698
VERSION     KCLJ01001698.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 741)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 741)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..741
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="189652cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>741
                     /note="ultra-conserved element locus uce-2210"
BASE COUNT          226 a          140 c          140 g          235 t
ORIGIN      
        1 aagagatgct aaaaatccag ctgcctgctc tctcactaag caaagttcat atcccagccc
       61 ctggtggttt tatttttcca attttagtgc aggaaataga agtaggtttg ggggccttaa
      121 atagaaaggg taggagaagc agttatcatc gagctttagc tttgaagtgt aaacttagca
      181 aagacttccc tgatgaagta tacatatgga actacaaaac tttttatcca tttgttttcc
      241 tgaccataac cacgttttca cactgtcagc attttcatta ggagctcttt ttgtcagagg
      301 tttataacga gaatgtaaag atttgctatg ggctaaatct caatccaaga gcaaatgttt
      361 ataccaattc tgaaaacaat cagcttgccc atttgtagtt atgcatgtgt tcatcatctg
      421 ttactgcttg tccaatgctc tgcaacttct ggaaggaaaa agagacatct ggaggggaaa
      481 aaaaagctat cctgcagata gcacactgta tgttctcctg agttattcaa taaggtactg
      541 ctgaaatgca gctttttagt caatacaaat actgtcaaat ttactgagaa atattgtaat
      601 gtatggctta gcctggtctc ccattactta cacagaattt gcttaaaaat tcactggaaa
      661 ttattcacct aatgaactga gccacttttg ccaggcacga aaattctttg aaagtgtttt
      721 agcttatctt ctggacctga g
//
LOCUS       KCLJ01001699             703 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 189760cal ultra-conserved element locus
            uce-2366, sequence.
ACCESSION   KCLJ01001699
VERSION     KCLJ01001699.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 703)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 703)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..703
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="189760cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>703
                     /note="ultra-conserved element locus uce-2366"
BASE COUNT          215 a          129 c          125 g          234 t
ORIGIN      
        1 tatctctatt acttagcttt tattgccatc tcaatacatc ccaggagctt aatagctttt
       61 tgccagtgca acaatccgga agcaagcacc gcataaaaaa cataaaaggc ctttaaaata
      121 acttacatat gatagcattc ctcataatac tgtatgaaaa aacatgtctt atttgtatga
      181 tgtttacata tacaacaaca tgattaactg caaacttgtc tctcatgtat aagagtgtgc
      241 acctcctacc atcatatcct ttgggggata tatccctgga ttgcaccttg ggagctatgg
      301 ctctcttgcc ataggcatgg ttgtcataac tgttatattc aaacgaagtc ttagagtatt
      361 tctctagttc cttggccaag ttggagcggg gtgtggtggt ggggacattg tttctgtagc
      421 catactgagg gatctccaat tgcttaacaa agcacatggg cctagaaatt aaagatatgt
      481 acagtttgtt agatgcagtt cagtttacta tgtttgtgca taatttatag ttcagattag
      541 aaaatcttag ttatttcttg tactcaagag acagcaatat attattgcat ttccttagtt
      601 tggttatttt cagcagacaa acaatatctt gaacaaagcc tagacaaaat taattctaat
      661 gccactaaat gtatcctgca gctaaaagta ttttaaagtt ctg
//
LOCUS       KCLJ01001700             708 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 189871cal ultra-conserved element locus
            uce-6248, sequence.
ACCESSION   KCLJ01001700
VERSION     KCLJ01001700.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 708)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 708)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..708
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="189871cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>708
                     /note="ultra-conserved element locus uce-6248"
BASE COUNT          202 a          143 c          122 g          241 t
ORIGIN      
        1 gtaaattcaa ttaatttatt tctgcaaaca ggatcttact gtatgaatag aagttaaggg
       61 ttttaagtct tttggtccac tctgctaatt acagtgtttt gcatatttgt tgccaaggac
      121 cgttttgaaa tcacataaat atctccaaga attgcctaaa tcttcttcac tctgttaaca
      181 aatgtcatat ttacagattg ccagaggact tgatggtcac catagacagc tgccagcacg
      241 ctgcggccag cgaggccatt tgtaattctc attaacagta ctaccatttt tgggtgtatg
      301 aaaagtgata acacaccgat ctaacagtca ttaagaactt tttcttactc ctttaggatt
      361 aatttgcact gacccagaat tctctatttg cttaacacaa gcagtgggcc actttgatgt
      421 tatctgcttc tataaacaat agcatacagt tctctcctgg gctaaaacag ctcttactct
      481 gctgagaatt agctgtatta atcattctga agtccaagag tgcatgatca taaattgtgt
      541 gcagggacct cacttagcaa ctcccaagac tctcatttat caacaccctt cctggatatt
      601 tagtatgtag ggagtaattt atttctgagc cggtgccttg tgatgtcttt catgttgaag
      661 taaagttgga aaactttctg caacaaatat aatttttctt acttcctt
//
LOCUS       KCLJ01001701             664 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 189980cal ultra-conserved element locus
            uce-5606, sequence.
ACCESSION   KCLJ01001701
VERSION     KCLJ01001701.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 664)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 664)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..664
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="189980cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>664
                     /note="ultra-conserved element locus uce-5606"
BASE COUNT          162 a          120 c          170 g          212 t
ORIGIN      
        1 attccaactg ttttactcga attggctgaa gaaaatccct agtgagtatt tgctcctcga
       61 caccgacatt aaattgtatt ttaattgctg tcagtcagga ttgttctggt ttagaatacc
      121 aacactgtgg tattgctgtg taaatgtctc agtgttccgc tgtggtcgag acgagctggg
      181 gatgttggga tgtaacttgt ctcttctggg ggttttatct tgccttttcg tgtgtctttc
      241 tgtagacata tctgaagaga tggattaaga atgctttgga ttaaaggatt gtggagcaca
      301 tgtcaatcat tttaggattg tcaaaaggag gattgaggag gatcagatca ataatggagg
      361 caatggtatg actccaagtg ctattgtcac agatgaactt ggcagtattg accttatact
      421 gagagacagg ggaattgagg ccgagcacta cgtgtcctca tgtcctcgtg accgcaggct
      481 gccattgctc ttctctttta aaaggggggg caattgtggc cagataacgg gcctttgtcc
      541 cgcagcgttt ggttacaagt gttatccgta cacttgtagt agaacttgca atcggagtat
      601 aatatcaata ctgctaaaat ctgcatgtcc tctgtgtgac tgatacagcg tggctgttgc
      661 attt
//
LOCUS       KCLJ01001702             760 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 190092cal ultra-conserved element locus
            uce-3862, sequence.
ACCESSION   KCLJ01001702
VERSION     KCLJ01001702.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 760)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 760)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..760
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="190092cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>760
                     /note="ultra-conserved element locus uce-3862"
BASE COUNT          262 a          148 c          131 g          219 t
ORIGIN      
        1 ccataaacca aatcaagcct cttataaact tgtgtactga caaacacatt aaaacaacag
       61 aatccctctt taaaggagtt tcggtgcaac tcgacttcta atttgaaaat agcaattttg
      121 gctcttttta cagacagaat gaaataccta aagtgtccct aaattaacaa gtaccacttg
      181 ccacagacag catcgccctt agcagctcct aaaaacttca gaaaaggatc ttaaaacagg
      241 aagcttagtg agcttataaa actgttgttg gagccaggaa cacatagcat atttaatctg
      301 caaactgtga gagtctacaa tgatttcagc aagatctgag gcatgccctc aaggtttgct
      361 gggatctggg attagggagt tgataagaac cctctactgc ccatggacat gtttttcttc
      421 tgcagttaaa cacaaatgca tagagacgtt tgactgctgc ttggcgttac tgctcaagtt
      481 atataaaagc tttgcagctc cttttgctgt caatatatca aagtttaaaa aaaatcatca
      541 aagtgtgaaa tttcatttaa agtctgccag tctacagctc tatttcacag acctatcaaa
      601 taaaagtaaa gatgaaaaat gcactgaaag aacttgaaaa gtttgcagca gcacccatgg
      661 cctatttttg tttattctgt ctcatttttt aaagtataac aaatcaattc ccttataaaa
      721 atgacaaggg aggatgtcta taaaacctgt ggttaaaaga
//
LOCUS       KCLJ01001703             696 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 190205cal ultra-conserved element locus
            uce-3655, sequence.
ACCESSION   KCLJ01001703
VERSION     KCLJ01001703.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 696)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 696)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..696
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="190205cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>696
                     /note="ultra-conserved element locus uce-3655"
BASE COUNT          195 a          139 c          169 g          193 t
ORIGIN      
        1 tcacctccat caaccttaac ttccttagtc acaatgcaaa cagctctacg tagttttatt
       61 tcatcattta ctgagacata tatcctaaac acttctggac agcagctgtg ggtggaaaat
      121 atataggatg gcaaagcttg tgaagtgtgc aagaaaaata gtgctagtta aacatgcctg
      181 aagattggga atcccagggc ggtcatgtgc ttcggctcag aaaagggagg gatgctgcat
      241 ttcacaacag aataaaaata attgctttgg ggacccaagt taaaatgcag gtgttttgag
      301 gggaacataa acattttttc ctaaatgagg cgttgagggc tgggagaagg gcagtaaaat
      361 tagtggaatt actgcctgat tttaaccaga tgattgctgc agttggacac cagcgcggtt
      421 tcattaggga ctctaattta caagccattc gccgcattcc aggggaatgc agcaactccc
      481 ccccacgctc ccaaagaatg ccagcactga gctttatggc agcaaatttg gggctttttt
      541 tgtcattctt ttgtgtcttg tttttaaagg ccagtttggc tgtagtgctg tggccaagct
      601 ttttgggaag ggaaagagag gcactagtcc caagaatctg tgtaaatctc cactggcgtg
      661 gaaaacatat ggtccttcta ctaaagagct gtcctg
//
LOCUS       KCLJ01001704             724 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 190419cal ultra-conserved element locus
            uce-3991, sequence.
ACCESSION   KCLJ01001704
VERSION     KCLJ01001704.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 724)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 724)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..724
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="190419cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>724
                     /note="ultra-conserved element locus uce-3991"
BASE COUNT          228 a          144 c          145 g          207 t
ORIGIN      
        1 acctttgtgc gggggcaggt ggggaaaaac acattcaagc agtacacagg ctgttactcc
       61 atatgtgttt gcaggacttt aatatatgtt tttaatctat gaaacatctg ggaaaaatcc
      121 aatttatact aagatggaat acgcatagca tagtttcttc aatataaatc tgcacaaaac
      181 taacagcatg ggtctatcct ttaggctttt tctagaagca taaaatatgc agaatcctac
      241 caggccatat tgccatgggc tgtgttgtca aggtgacaga gtagctccag ggtttgagtg
      301 ttgcttgatg aatcatcagg ggattcatga ctgcctgatt ccaattcctt cggcatcctc
      361 caaacagcag cacatgtcat gactttagtg tctgaagcta agcaacagag aataatgtca
      421 acagatcatt gtatgggaga tgcatttcgt acacactgca ccaacattta cacaaatcta
      481 taagcaatgc acatctgctg tttgaaatat ttaaaaatct tataccaaga tgaattcaaa
      541 gaatgcagaa cgtggctaca gacgcagacc tcaagtcagc aggtgctgca gaactcaaat
      601 tagcatgtat ttgacatgtg tcttcctgaa caaaagcaaa attaggtgct cgggacgcat
      661 gttttccaag tttcattccc catactgatg ttaatgaata tgacaagtta cattgcttga
      721 ttcc
//
LOCUS       KCLJ01001705             492 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 190531cal ultra-conserved element locus
            uce-4389, sequence.
ACCESSION   KCLJ01001705
VERSION     KCLJ01001705.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 492)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 492)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..492
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="190531cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>492
                     /note="ultra-conserved element locus uce-4389"
BASE COUNT          145 a          114 c           93 g          140 t
ORIGIN      
        1 agctttaaca acattccaga tttttgcttc ctcctctcta atactgctgt gcttttcagc
       61 ctcaaaaagt cagccaggca atcctgtgac aaactccact aaggacttca cagttaacaa
      121 aacaatgaat gaaacatcat tctggcacac agaacagctt tctgctgtct tctgccgcct
      181 ttgatttttt tttccccaag tggaaaagca acttcaaaaa caaggtgctg tcattttagc
      241 aaaggagaat taggactgtg aaaggatgaa gtgtccttgc acagaaagac tgcagctaaa
      301 attgtatcaa tattcctgtt ataaactgat aaacacagag ctccgtgagg tcaagttgta
      361 catgcttgag ctgacatgcc aatctgccag cagtcatatg gttctcatat ggcgacacgc
      421 cacagatgcc aggaaaatgt gagaagtttc tggctcattt catttcactc tcctgaatgc
      481 catgtttgcc tg
//
LOCUS       KCLJ01001706             556 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 190630cal ultra-conserved element locus
            uce-6118, sequence.
ACCESSION   KCLJ01001706
VERSION     KCLJ01001706.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 556)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 556)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..556
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="190630cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>556
                     /note="ultra-conserved element locus uce-6118"
BASE COUNT          148 a          110 c           90 g          208 t
ORIGIN      
        1 tgtagatgta gtcctgttgc cagaaatcac actttatgtt agagatgggt ctgaagcata
       61 gaaacgtctt gctcacatca gtggcttctg ttcctactta atgtttgatc ttattaaagc
      121 ggtatttggt tattatctga tttctgtagg tttatttacc agttcttctt tgcgtgccct
      181 tcattgtcct tgattatttc tacattgtat tgtaaaaaag tttcagtaca tatttttccc
      241 atctggttag tccagcactc ttcttaatta gtaaaatgcc atcctgtcag attctctcct
      301 gccaggaagt cattcagctc cgaaatcact tcttcacctc catcgtatat tttaacattt
      361 ggcaaaagtc ttattcttcc ttaaaatcaa ctatagcaat gctcattaag tgtagtttag
      421 gattaatttg tatttaaaca aggcctcatg ggatttcaga acgtgtattc agaatgccat
      481 aaaatatgta acagcacttc ttaattaata ttccttcatt tgggaacgat gaaaagcagc
      541 cttactgttt cccctg
//
LOCUS       KCLJ01001707             776 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 190740cal ultra-conserved element locus
            uce-3159, sequence.
ACCESSION   KCLJ01001707
VERSION     KCLJ01001707.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 776)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 776)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..776
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="190740cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>776
                     /note="ultra-conserved element locus uce-3159"
BASE COUNT          241 a          144 c          145 g          246 t
ORIGIN      
        1 tagtcctgac cactgttttc caagtgtgac cactggtaca gaaaccagta caaccttaag
       61 cttccaggga gagctatgcg cttcctgagg cctgtctcag aacaccacca tgaaagggat
      121 gatgatgaaa tatcagctat catgtaacta tctataaatg ttagatttct acaaagtgat
      181 tccactgaat tgtaattaag ggtttgaaag tcgaatgatt ttaagtgcta gttttaatta
      241 ccgcttggtg aactttagtg tgttagaatt gtcacaactt tcctttagaa ttagtgtcaa
      301 gccaggcaat acagtgggaa attattaact catactttgg ttcagcaatt atctgcatta
      361 caaggtttat gcaattagct gtttaagatg tcattatatt ttgccatctg gtacacagga
      421 gtttatgcat atgaacaggc acatgttgaa gtgattttca ctatatgaca cttgatctca
      481 acccaaatca tcactataat gagtggaaga cacagtgtac agtacattag tggcaggtgc
      541 atactatcaa cttcatttta atagaagact ttcatgtttc catttttaaa gtattctgca
      601 caagtgctga agaattaatt gctcgtttgc aatctagcaa aaaccgagga cacgttattg
      661 ctaaatgcta atcagctttc aggaaagcgg ccacttattt aagttctttc catctgtaac
      721 tccaggccaa tttctgctgc agacaataag aaagtctagc taagttcagc ttaaaa
//
LOCUS       KCLJ01001708             646 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 190852cal ultra-conserved element locus
            uce-2563, sequence.
ACCESSION   KCLJ01001708
VERSION     KCLJ01001708.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 646)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 646)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..646
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="190852cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>646
                     /note="ultra-conserved element locus uce-2563"
BASE COUNT          204 a          110 c          134 g          198 t
ORIGIN      
        1 tctgtaatag gtttaaatct cagtcaggga gaaaagtatg tgtttttaac taataccatg
       61 tcatctcttt aatcatgctg attctgaata attcacccac tgtggaagtt gcagggcgag
      121 aatctatagc tctatctctc actgggggta gtttattatt actgagtctg acagcagaaa
      181 gccctggcag gttaattgct gcagcaagac tagctgggag tttgctgttg atatatagtg
      241 actaaaggga gtgaaggaga ttgactgtgc ctgttacagc acaaatatct tcatgcgcct
      301 caggttcctc acaaagatat gagaaataaa tgttcgctct tcattttctg tctgcacaat
      361 acaaatagcc ttgggctgaa catggcaacc acagcataca gaatacatat gaggaaattt
      421 gcaaattaac attattacaa acattcctgc ctgaaagtgc tgaaaatcaa tttcaacata
      481 gtttgcattt taatgaggtg ccaaagagat aaatcagttg tgtttgagga acacttggct
      541 ggcaatgatc ttttctgatc atatcgtgtc ttaactaata ttagattaag taaaaccact
      601 gttaattgaa ggcatgggaa atgttactgc tagttaatga agtaaa
//
LOCUS       KCLJ01001709             662 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 190963cal ultra-conserved element locus
            uce-4160, sequence.
ACCESSION   KCLJ01001709
VERSION     KCLJ01001709.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 662)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 662)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..662
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="190963cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>662
                     /note="ultra-conserved element locus uce-4160"
BASE COUNT          216 a          141 c          115 g          190 t
ORIGIN      
        1 tctcaaataa ataagagcca tggaaggaaa aaactgcagc tacaaagtag ttctaaccca
       61 ttaaatgcag atggcccact gggggtttaa tcataagaga aagagcacac atcatgctga
      121 aatatagagc tgttttctat cacttgttac catttgaatg tctgtcccag gaaagtgaat
      181 tcaatatatc ttcctggcca tcagttgccc tctgaatact ccttctctct ctgatgtagc
      241 tagatttccc tttagaacat acagagatga atgagctctt accacacgta gaagtgaaag
      301 aaaacatttc tttctgcacc agaacagatg agattcatca ttaagagaat ggatttgacc
      361 ttgtcaagtg gaccaaagca atttataaac aaactcctac aggggaggct acttttggcc
      421 aagtactata ttagcagtgt tttacttatg cccgctgcta ccttacaata acttcataaa
      481 caggctgact tcctgaaata tagagtgctg agagatatca cagatgtacc tagaaacact
      541 gggatagcat attccctccc tagaggctga atagaaatat gtccacccac cttgctttct
      601 cattcttggt aaaagttgct aatcactatc caaattaatc ttcatttcca atatgtatca
      661 aa
//
LOCUS       KCLJ01001710             532 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 191076cal ultra-conserved element locus
            uce-5977, sequence.
ACCESSION   KCLJ01001710
VERSION     KCLJ01001710.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 532)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 532)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..532
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="191076cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>532
                     /note="ultra-conserved element locus uce-5977"
BASE COUNT          181 a          100 c           83 g          168 t
ORIGIN      
        1 aaacacaact ggaaatgggt gtttgaaaac tggtgccaca cctgatttta attaaactaa
       61 actcaggatc ctataacata taatttcctg tttttggaac tacttttaat caggctaggc
      121 tgccttgcaa catacacaat gcagaaggga gtgctagcat aacacttcaa tagttaagtg
      181 actttatgag aaaaatactt ccaaatgttt cctaaaacct tccaaaccgc accaaagaac
      241 attatcgtaa tattatgttt ccccatggcc tccaatattt aggcttgcta ttctcgaaat
      301 gatacttgga tgaaaaatac aagtttatgt aatgtataaa ttgttcctag aagtaaagtt
      361 gcctttaaaa ttactctgta tagatgtcag atattttaca ttttcaatag cttttctgta
      421 ttaattggag aaatggccag gaataatctg tatttcagaa ctgagcagtc accctgtgat
      481 cttattccta gcaaacactg aaaacaataa ctgtcctaac cgattacaga tc
//
LOCUS       KCLJ01001711             562 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 191182cal ultra-conserved element locus
            uce-2923, sequence.
ACCESSION   KCLJ01001711
VERSION     KCLJ01001711.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 562)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 562)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..562
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="191182cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>562
                     /note="ultra-conserved element locus uce-2923"
BASE COUNT          131 a          117 c          167 g          147 t
ORIGIN      
        1 ttgtttgatg ggggcggggg ctggcttttt ttgacagtag tactgttggc attgacagaa
       61 gatgactgga atgagttgga aagaaagatg ccatctgaaa ctgggcgagg ctggcgggag
      121 ggctgctgtg gcttaagggt ggcaggagga aagtcaccat aggattttct tgtgctggag
      181 tacttatcct gacctgctag attggaatcc tcctcctcat catcatcatc attgtaagca
      241 acaaacttgg cagtataaat cgtgtcaggg gagaggacct gtgttttgag gtaagaggtg
      301 tttcgctgag gtgggggagg aggagcgtta gatgaagggg ttggggatgg gagttcatat
      361 tcccgtggaa gcggaggtct gtacagacca ggctcgtcag gttccagcaa tcttcgctca
      421 gcttcatcgt gctgcctgcg cctttcagcc tctaagcgac tgtaatactc ctcttcctgg
      481 cgcctctgaa agcccacagg aaacagaaac acagtggtca catttcaatc catgctttcc
      541 atcactgagc tacaaacatc tt
//
LOCUS       KCLJ01001712             680 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 191287cal ultra-conserved element locus
            uce-4562, sequence.
ACCESSION   KCLJ01001712
VERSION     KCLJ01001712.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 680)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 680)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..680
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="191287cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>680
                     /note="ultra-conserved element locus uce-4562"
BASE COUNT          161 a          177 c          163 g          179 t
ORIGIN      
        1 ggttaaagat gggcattttc cctccccagc aaaggtaatt aatctattta gcagggaaag
       61 aatttgccat tgagcaggca gggccgttca ggagagccct tcagccccca acaatatcgc
      121 atttccccgg tgcataaaga ccggggccgt ttccgctggc ggggccataa tggaggtatc
      181 tctttacaaa gcccccactt caggccagct gaatgcctct gccgagcctc ccaaatcccg
      241 cagcccttta gcaacaaaga tctgtttctt tgcttagcat gaagtagacc tcagaggccg
      301 gtgtgtgcct tggcctgtag gccaaaagcc tcctgtttac aatttcccta ttcctgtttt
      361 taatgttgtt ctgagagcag ccacaaaggg ccggttttgt ccagcaggaa caagggagct
      421 attagagagg gacggaggaa ggaaggaagg gagatccaaa aggagcagcc caggagggat
      481 tagcatacac agctgttccc tcagggacag gagctttatg ctttttataa tttccctctc
      541 atttacattt tttaatatct ggtttccttg tttccagccc tcgtctccag gaccatctgc
      601 ccattttatt ggatttttca ggcaggcgca tccagcccag ggtgttcact ggctccttaa
      661 atcctgcaat ccttgtcaac
//
LOCUS       KCLJ01001713             709 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 191397cal ultra-conserved element locus
            uce-2598, sequence.
ACCESSION   KCLJ01001713
VERSION     KCLJ01001713.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 709)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 709)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..709
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="191397cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>709
                     /note="ultra-conserved element locus uce-2598"
BASE COUNT          234 a          138 c          132 g          205 t
ORIGIN      
        1 gttgtctctt ttcagagatg cagggagcca agttgggcat cacaaagcga atctgacagc
       61 ggaaagacac aaagagaaga gagtaatttg gatgacggcc acagtggatt tcaaagcttc
      121 cctgccacac aactcttctt ctggggaatt taacatttgt agtgcaactt ccactgggcg
      181 tccataatga gagtatattt tcaagtgcat tcaaatccat ccttaatcat gccaaatgtt
      241 ctttgctagc tgtcactgag acatgcccat taagcctccc caaagtttat ctcctctgct
      301 gatactaatg gatgtatgta attatcacag tcccctttgc atcaacagac aattccaagc
      361 gcaactttgg gaatcttaaa aatctgacat cttcaggaat ttcatgacgg tagataatcg
      421 aaagtgatcc atggaacatt ttaatattta aatagctagc gatgcaccag aagtttttaa
      481 ttaaattata actcaagctt gaaaagcaaa agtgcatgtg ttgtgggagt ttaaataatt
      541 caaactctga atatctggag tttttgtaaa tccaaagaca aatgccattt gcacgctttt
      601 agaataccag aattaacaca cgaaaacaag gaaacctact gtacttagcg gaacttttgc
      661 actttcagga aacagaatat gaagcagttt ttcaagaatt ttttagaaa
//
LOCUS       KCLJ01001714             336 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 191509cal ultra-conserved element locus
            uce-6256, sequence.
ACCESSION   KCLJ01001714
VERSION     KCLJ01001714.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 336)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 336)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..336
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="191509cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>336
                     /note="ultra-conserved element locus uce-6256"
BASE COUNT           86 a           95 c           76 g           79 t
ORIGIN      
        1 aaagcagagg gacccctccc caaacacgtg gccagaggag acgcgggcgc cccacgcccc
       61 gcgctcgcac ccgccgcttg ttttttacat ttcgctccta attatgttgc atctattgcc
      121 atacacttaa ttagctgcat taatgtgatt tcttttcaca tagtcaagca attaagagct
      181 atgattgagt ttcattcaat tagcctcaac aaacatgcta attgatgtcc cagatgcaaa
      241 tgaggtgcag tgagagaaac ctgctggggg acccggggct cgcagctcac tcggattaac
      301 acggctcctc ccagggcaca gccatgtccc aaagag
//
LOCUS       KCLJ01001715             731 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 191617cal ultra-conserved element locus
            uce-3166, sequence.
ACCESSION   KCLJ01001715
VERSION     KCLJ01001715.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 731)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 731)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..731
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="191617cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>731
                     /note="ultra-conserved element locus uce-3166"
BASE COUNT          181 a          164 c          166 g          220 t
ORIGIN      
        1 tcatgcaaac taggaagaga tctgtcaaat atcaaatacg aattttgttg ctgaagctct
       61 tggaaaattg acaggtagca tgcaagcaaa cattaaatca ataacagcga atttcccccg
      121 ggaaacttgt agtgttttct catcaaaatc tttaaatcct taaagaaccc atgaaaggtt
      181 tgcacactgc gtgttggtta atctggttac ctctgcatgg ctcggcgcgc agggccagct
      241 aatagccagt gctgatcacc cagcagtgtg tgtaataccc agtgccccgg cgctgatgta
      301 ttgtagcttt gttagtcact gtggctcctt ggtaaattca tttggagtcc tccggggttt
      361 taaatctctc atttggccaa caacgaggtc tgaaaagatt gcagttcatt tcgacccaca
      421 gtggatggaa ggctcattta ctggctgcag gcaactcaat caggccggcc gctgatgagt
      481 gagtgacttg ttcagaccgc tagtcaatat gtgtctgctg tgatagaatg tcagcatctg
      541 ctgcctgctc ctgtctccca ctgctctggc ttttttcatt tgggctgatc aatgttatta
      601 aaaacaccta ggagttcctt aactgctctg ccacttgagg cttttccttc ttaagcacaa
      661 ctttgtatta tctgcaaaca cgtgcagatg atgtttttta cgtgagagtg tgtgtgtctc
      721 gggcacataa c
//
LOCUS       KCLJ01001716             630 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 191725cal ultra-conserved element locus
            uce-2353, sequence.
ACCESSION   KCLJ01001716
VERSION     KCLJ01001716.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 630)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 630)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..630
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="191725cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>630
                     /note="ultra-conserved element locus uce-2353"
BASE COUNT          179 a          162 c          107 g          182 t
ORIGIN      
        1 ttttgcaaat catgcaccaa accattgctt gctttaccca tcaggtgcga tcttaagcaa
       61 aactttatca aagtaacatg ccactttcct gcatgctgat tttacaaaac tcactccctg
      121 aatgttgttc aacgtgatgt catcacactg taactcactt catttacagt atctgtttca
      181 cttctactca caagctaata taactcaaac tgcacacagg ctgctagaca catgtgcaca
      241 gcaaatggaa tctgaactta gcttaacagc ctcatttatt cctgatggtt taaattattt
      301 catcacaatt aatgacaccc cctcagcttc ctgtgcagcg ctgccagatg ttcagagacc
      361 acaaagccac tctcttcttt gacggctagt gacaagtcgt cctctgaagg acgttccctc
      421 agtgcacagg ccggatgaca cctccattgc ttagtacctc tctacctccc caagtaacca
      481 tggtgaaaga agaaggaaga catgagaaac cagtcagcac attagtaagg acaaattaag
      541 tgaagcgttc tgaacttgat gtatctcatc tcctcctact ggagtttcaa gcctgatttt
      601 ttcattcgtc ttgatcttca aggtgtgaag
//
LOCUS       KCLJ01001717             373 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 191833cal ultra-conserved element locus
            uce-3636, sequence.
ACCESSION   KCLJ01001717
VERSION     KCLJ01001717.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 373)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 373)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..373
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="191833cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>373
                     /note="ultra-conserved element locus uce-3636"
BASE COUNT           78 a           91 c           75 g          129 t
ORIGIN      
        1 ttttctctca attcctgggg gtgctaggct atttacccgt taactgtcag ctgtttctgc
       61 tgctcagttt atctgtgaag gaagttgatc cctgcatgcc atgacagaga ccattgcttt
      121 gcccatgcct gctccttaca tgtaccgatt gcttatctgt tctgcaacct ctcctctttg
      181 ttactgcttt cctttcactg gatgggattg attccctgtg ggctcatgtt agaccacggg
      241 aaatgtctgg gtaacacatg aagagatgga aaatcttaca gccacacaac aaacggttag
      301 tttacagtgt tgccacttct cttccttaga gtgctttttc cacttcttga acatttgaat
      361 caagtacctt ttg
//
LOCUS       KCLJ01001718             769 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 191940cal ultra-conserved element locus
            uce-4615, sequence.
ACCESSION   KCLJ01001718
VERSION     KCLJ01001718.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 769)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 769)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..769
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="191940cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>769
                     /note="ultra-conserved element locus uce-4615"
BASE COUNT          176 a          151 c          196 g          246 t
ORIGIN      
        1 ctcttttgct ggagaatgat gggggagttg ggcattgctg ttaattattt tattatgctg
       61 atcttgcgag tctggtgatt gcactgataa aggagcagcc ttgatttctg cacatatgtt
      121 atagttactt gtaaaactgg gctcacagat tgctctgaag cttttactgt tcctgcagaa
      181 cattttggta gttccagcag tttgatcaca aatgcagcat ctctctccta atgctgtgca
      241 ggttgataaa acagttgccg agctggagtc cctaaagaaa ttattaatta tctggttaat
      301 gtgcatcagg ctgtgggagt gtgagattaa tcaccagtgc tgggatgagt tgctgaagtg
      361 gattttggtt tttcgtctcc tgtcactcgg taatggcttt tccttccttc accatcaggt
      421 gaacaggtgc agaggtgctg tattttcatt ttcctgtagt cgggaacagc cggtgaccag
      481 gaaatgcctc ttcctcagtc ctgctgcatg agcagtttac aacatggaga gctgcctgct
      541 tcaggtgttc cagctgcagg acatgctcct acagcacagg actgacctga gcctttgcag
      601 ataaacacat gtgcctgggg agagtgttgg gctgagctgg gtctggctct ccccaggtct
      661 caaaggggtt gttatatttg gaagtggaat tgcaacttga ctcctatttt gagtgtattt
      721 gtattacctg gaatttttca gtaaatgaac attcagcaaa aatgtgctc
//
LOCUS       KCLJ01001719             749 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 192050cal ultra-conserved element locus
            uce-6838, sequence.
ACCESSION   KCLJ01001719
VERSION     KCLJ01001719.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 749)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 749)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..749
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="192050cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>749
                     /note="ultra-conserved element locus uce-6838"
BASE COUNT          211 a          141 c          159 g          238 t
ORIGIN      
        1 gggctattcc tagcattgct atttcataat attatttgta gggagggaag tcagcagacg
       61 cataggctcc tttatagcat tgacaagtca aggagatgat taacgagagc accagacaat
      121 gtaatggtag gagaaggccc acagaagtta aacaaaagtg ccttcagaat ttagagaatt
      181 cccatgatcc atagtaggac ctcattgtgc ttgtctactg tttctatttt tgattagatt
      241 tataaacaca gcaccacata ttttcatgtg gctcatagcc ccagggcaga gtgagattga
      301 ctgcgctgaa actgtgaggc ttgtgaattt cgggcaaggg atggagtgaa ataagtagtg
      361 taattgtttt tgtggagtga ccgtgggacc tcttctgttc tgaattacac atggttcaac
      421 cctttgaccc aaccaacctc ggcaatgcct ggtagatctc ctaaagctgt gctgaaaggt
      481 cctatcagtg acatgttgga acattatctg tcatgtgaga tgtgtgccaa caaccatatt
      541 aaactacatt aattactagt gaggccatgt ttgtgacaat ctcagcttca tttaacccat
      601 catcatgtta gttattgttt aagcaggaag tacaaatggg gacaatttat gaaatcaaaa
      661 tgcagcacca atgttttgtt taataaattg tatgttttac tttgttttat ttcccttcta
      721 cctcccctgg catttttgtt cttgtcatc
//
LOCUS       KCLJ01001720             500 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 192163cal ultra-conserved element locus
            uce-7379, sequence.
ACCESSION   KCLJ01001720
VERSION     KCLJ01001720.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 500)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 500)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..500
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="192163cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>500
                     /note="ultra-conserved element locus uce-7379"
BASE COUNT          144 a          109 c          139 g          108 t
ORIGIN      
        1 aaggccctgg cagcgttcaa taagtctccg aggctgctaa gtgagatgtt gacagaaaca
       61 aaagaaaccc cgttaggctg gaagagggcg agggagaggg aggtttgcat acatttcaag
      121 gctcagccaa aatacaaagt gctttttgtg aacgcaagag aaaaggacgt gaagcaggca
      181 aggaggagga agagaagggg aaggatgcct caatacaaaa aagcttagcc tgataaaata
      241 tttaggacgg gctcacacat cagaatatta atgctctgca ttccttgtgc ttgcactctg
      301 ttgatcttca ttctccagtg accttgttta cagtatctga atttgcagtc tgcattttaa
      361 taaggccctg agagaaggtc tgagacacag cgcctcgccg aaccaacttc aaaacccctc
      421 cgactgcttg gaatcctgga ggatgggctg tgcctcgggg gtgcctggtg cccacccggg
      481 caggcaaaat ggggcagcat
//
LOCUS       KCLJ01001721             755 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 192271cal ultra-conserved element locus
            uce-2185, sequence.
ACCESSION   KCLJ01001721
VERSION     KCLJ01001721.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 755)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 755)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..755
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="192271cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>755
                     /note="ultra-conserved element locus uce-2185"
BASE COUNT          250 a          129 c          120 g          256 t
ORIGIN      
        1 aaaggttcct attgaagtgt atttttctcc tgcaaactgg aatcaattac aaatggcaaa
       61 attttttcat ctttccaact ttgttcgaag tgtatgtgca tgttttaaag tggaatcact
      121 tattgcttta atatttgtgg taaatatgaa attagaatct ttcatttcct gctttcctac
      181 cataatgtta aaaacataca aatgaacttt taaggctgac attcgtgttt gcatggaaat
      241 aaagcacaag ccacaaacaa agccagcaat ctcacatact tgccttcagt ggtaaaggat
      301 ggaaaggctg cctgctacca atcagcaagt ggttgctatg gttacaaggt caggaaatat
      361 gccttttccc cagttgtcca aggcttgcac atgtcacttc tgaaactatg aattttatat
      421 acaggtcagg agatgcatac caaagaaata aacagtgaac tggaccataa tgacagctaa
      481 cgttcaaacg tccttgaatt ttttaaattt ctatccaaac acattttgtc attttgaatg
      541 ggttggtttt tttgtataaa attggagcaa ttctttcctg taatgaaatt ttgcaaagta
      601 ggtacaaact attattataa gctgcatcaa taactttcat cagaaagatg cttatgttct
      661 ttccctttat aaactcttta aattacagct ttggaatatt ataagaatat aatttgatgc
      721 aacttaagaa ctcagaataa taactacttt ctaaa
//
LOCUS       KCLJ01001722             763 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 192382cal ultra-conserved element locus
            uce-1207, sequence.
ACCESSION   KCLJ01001722
VERSION     KCLJ01001722.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 763)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 763)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..763
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="192382cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>763
                     /note="ultra-conserved element locus uce-1207"
BASE COUNT          226 a          178 c          136 g          223 t
ORIGIN      
        1 aagacatctt cacgctgaag ctctgacaat actagagctt agaccactag tctcagtttc
       61 tccctagata aaaagaaagg tcttctcttc cagggtttcc tccctccttc ctggactcac
      121 tgggactaca ggctctgaca ctcctttact gcttttctgc aatttcacct ccaattgctt
      181 gcaccgtcca ttgaggttaa gtcactgatc tagacagagc caccttaaca ggaattttgg
      241 atgggtctta gtgaagggga ggaaaaaaga ggacataatg tttaattata agaaatgatt
      301 gaaataggca cagacatacc ccgggtgcct ctgcactgca gcaagctcta aacttgttat
      361 cgttaatggt ttaaatttca ctgtgctaat catttcagga cacaagcctt tcttgataat
      421 ctaatgaatt attccaacat ccttcagcaa aaaaaatcct ccatgacagc actaattaca
      481 agacgttttc ccagtgctta tgtaaaatat gacagagcag cagcttaggg aattgcagaa
      541 aactgcttct aatttccact gagaaactga caaacacctc tctttcatct ctcccagctc
      601 tcaagtaaga tttaactttc tcatttagtt aattaccgag tgaggatcat cattttcccg
      661 gatcggagcg gcacagagcc tttatcgtgt taacttgtga acttgatcga tggctgctgc
      721 taaaacttaa taacttcacc ccctggcaaa ttgtaagata aat
//
LOCUS       KCLJ01001723             325 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 192492cal ultra-conserved element locus
            uce-7659, sequence.
ACCESSION   KCLJ01001723
VERSION     KCLJ01001723.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 325)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 325)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..325
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="192492cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>325
                     /note="ultra-conserved element locus uce-7659"
BASE COUNT          109 a           80 c           43 g           93 t
ORIGIN      
        1 gtgtgtattt acaaacacac catttgtatg tgagtgtcac atgctcccag acagcatgcc
       61 aggagagaga tttaaacaaa tatctctttc tctaaatact gtatgttccc ctggtctatt
      121 catttcattc tgctttatct atcaaaaata tattaaccca aaagcctgtt tccatcaaag
      181 tctcgattcc atgaacattt aaagataagc cttatcttat tactggtgca ttaacaacag
      241 aaatctaaag ggctactgtc aatcatctcc ctcccctcaa aacagttctg gcagacacaa
      301 acacacaaga caccaacaag cacaa
//
LOCUS       KCLJ01001724             374 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 192599cal ultra-conserved element locus
            uce-3314, sequence.
ACCESSION   KCLJ01001724
VERSION     KCLJ01001724.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 374)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 374)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..374
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="192599cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>374
                     /note="ultra-conserved element locus uce-3314"
BASE COUNT           83 a           85 c          104 g          102 t
ORIGIN      
        1 ggcgtgtttg agggtcagct cagccatgtg taggtgaggc tctccttgga agccttcaga
       61 gctgtaatcc agctcggggg agtggagctg tggcccctgc gccacgccgt gtccctgcag
      121 cccaggaggg acccagtgtt tgtcactgag cagtgtcatc tcattacatt gcatattgca
      181 gtgtaatgat gtgaaatgat taaatgacaa aatgccagct cactgcccct taagtagcac
      241 acttttaaaa gctattatta atttctgtat ggtccttgcc agaaaatagc gcaagggagg
      301 tggctttgat cctgtttcta atttgcagtg aggtgtggga gtgctgtcca cctcaggagc
      361 acatgtccag tgct
//
LOCUS       KCLJ01001725             659 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 192701cal ultra-conserved element locus
            uce-4313, sequence.
ACCESSION   KCLJ01001725
VERSION     KCLJ01001725.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 659)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 659)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..659
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="192701cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>659
                     /note="ultra-conserved element locus uce-4313"
BASE COUNT          192 a          156 c          105 g          206 t
ORIGIN      
        1 acgctggtat tttaacatca cattcagcac cccatcccaa acccactgac ccacaattca
       61 aagcgttcaa attacaacat cccactattt tccccacctt ttcaatttta cacaaagcat
      121 cagctgacag aggaaatgtg gcttatttgg acaaccttgt tctctgagcc tgccaactgc
      181 tccgagctaa acaatcaatg ctgtccttct caactttttc ctttccaatt aattaattta
      241 aattgaccat taagtcagca gagtttttga ttgatatttt cattaacaac cctctcatgc
      301 agacctgtcc aacacctaag aaatgtatga taatgtccaa tctgcatgaa ggggtctgag
      361 catctccctt cacctctcag tgctagtgag ttattactcg aattgtgctt gctgtttcat
      421 tgagtgtaat ttgaatacag attagctgcc ccagtgttcc agagctttgg cattatcatt
      481 actggggaca gtaatttgac tgatgaacac acaggttatc acaaggtcat caccttcaca
      541 gtattggaat ggtccatcgt cccaattttg gagggaagga ggctaaacct ttcaatagca
      601 aaattaagtc ctgtaaatta acttgtccga taacttattg aataaatcct ttactaatt
//
LOCUS       KCLJ01001726             645 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 192809cal ultra-conserved element locus
            uce-1136, sequence.
ACCESSION   KCLJ01001726
VERSION     KCLJ01001726.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 645)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 645)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..645
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="192809cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>645
                     /note="ultra-conserved element locus uce-1136"
BASE COUNT          231 a          108 c          120 g          186 t
ORIGIN      
        1 ataaatagtc attgtgggaa actggagaga gagattgttc cagtgtctac aaaatacttc
       61 aacagactga caagagagtc acatttcaag caaacattaa atagcaccac catgttaaat
      121 gatggtagaa aaggcaatag ttcacagaaa tatgtatgtg tctgctgtac acaaaaggca
      181 aatagctgtt ttgaactgtg aagactattt aaaggtttag tgtacacctt ggattcctgc
      241 tgcctacata agtacagaga cctaaatcca ctgcatactg ggactaactg atcaaagcag
      301 tagttaaatc tatccatgga aaatctaaat agtctttgga agcaactctt tgaatgcaga
      361 ttagtgattt cattgaagta gtcaatcaac tttttttctg gttgttaaaa tgtcactgag
      421 tgaacagagt agataaaaaa aatgatgagc aaaaatagta tttcaacttg aacaaacttg
      481 ctatttgtag actggatcac atgaatctgc ttcagtcaag atcatttcag aggtagctac
      541 aggaatgaat cccacaaagg gactaagttt aatcatccaa tcccagactg tattgatttt
      601 ggaactactt gcaatgacta tataaataag ccatttcttt gcaac
//
LOCUS       KCLJ01001727             661 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 192919cal ultra-conserved element locus
            uce-6959, sequence.
ACCESSION   KCLJ01001727
VERSION     KCLJ01001727.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 661)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 661)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..661
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="192919cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>661
                     /note="ultra-conserved element locus uce-6959"
BASE COUNT          201 a          125 c          109 g          226 t
ORIGIN      
        1 tccccagttt agtcacctac ctgaatggag gtaacactca ggggaagatt gacatgggat
       61 aaatgaaaca attgcacccc ttccataggg ctttccagtg aatggtacaa taatccttgg
      121 gatgattcat aataaaaaat aaacatccag atagcttaaa ccattgcttg cattattttc
      181 ttatttaaat atcttaagtg ttttctaatg ctgcacctac ctctcagtca caaatgctgc
      241 cttacagttc aaagatgttt gctttaaagt taatcctttg ggctctgtaa aatggacctt
      301 ttgtctaatc aatgcaaatt gattttgcta ttctgtattg acctctcaac cctttgactg
      361 tccatggtaa tttctttctt cacctgataa ggtacctgat ccataataaa tcaattctaa
      421 ttagtttgga gacttcactg ggagcataag tttgttggaa aaaagcagca ggtttcaggt
      481 agctttttcc tatctctcca tctgtagtta tattttttgc ataaggctgt cttcactata
      541 ttcctggata atcctgagtc ataaatataa acaaatttgg aattgtactg acgaagtata
      601 aaataatcta aaacagagag cagctgatcc tggatttaaa cctaaacttt cgatgtttaa
      661 t
//
LOCUS       KCLJ01001728             637 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 193027cal ultra-conserved element locus
            uce-5037, sequence.
ACCESSION   KCLJ01001728
VERSION     KCLJ01001728.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 637)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 637)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..637
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="193027cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>637
                     /note="ultra-conserved element locus uce-5037"
BASE COUNT          206 a           89 c          127 g          215 t
ORIGIN      
        1 ttcggaataa aatggtctga ttaccaaaag aactattatg aaatactcaa aagcagtggg
       61 gccaagtgtc actgaaatac ttccctgact tttgtatcaa taaatgaagt ttagaataat
      121 gctttggctg ggagatactg agttgcagag caggatagta ttaagttcct aatattgagt
      181 aactgttcta tatgtctcag atttgttgaa cataatgtct atatgttaaa cagttttcta
      241 tggtatttaa aaattgacat ttcagagagt gtaatagcat aatgaaatgt aaactgaaaa
      301 caggaatgag ttaattagac taatgatccc ttgactcctt tattagccag ctctttagaa
      361 attgggatta gctttgtttt ctctgctgaa taaagacagg aaggatgatg ttgattctag
      421 taaatgacag caccagaaga aattagtgtt ttcctgttcg ttataggttt catcatctga
      481 gataaaaatt tagccttcct gcatgcatac cttcacttgc attgggaaaa aaatttagga
      541 atgccttttt aagggtgatt atgtgatttc tggacttgaa actttacaac tctttgtgca
      601 aacctggagt agactgggtt tgaatttaaa tgaagtc
//
LOCUS       KCLJ01001729             542 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 193137cal ultra-conserved element locus
            uce-7079, sequence.
ACCESSION   KCLJ01001729
VERSION     KCLJ01001729.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 542)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 542)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..542
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="193137cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>542
                     /note="ultra-conserved element locus uce-7079"
BASE COUNT          149 a          109 c          132 g          152 t
ORIGIN      
        1 tttgtgctca gagtgggtgg gtgagctcca cctgtgcagg tcaaggtgcc actggagaag
       61 ctgagcacga gctctccgtg gccgtgtgtg taatcctgag cacttgtgct gtacagccga
      121 agcaggagat aacaataaat tttttactgc tggctggcag aggtgtttag gatgtgtttt
      181 ctttatatct tcatccgccc ctaattgaag atgctttaaa attgaatgac tagcagtcaa
      241 aacgtgtttg cttcaaactg agaagaaaaa tgctggtgtc tcttcttgca agctgattgc
      301 gctttgtaca cagctgacag ccacagtcac tttgagtgac tgataagtgg gaagctttgc
      361 cacttatcaa ggaatgcacg ctgaaaagaa aggactggag ccgttcagat gctttggcat
      421 gttcaaaata acatctcaca tcagtcaggc tcaggagaca tttcaaaata aactttatat
      481 ctatctatag gaattcaatt taacagacag atcgctgtgt ggcatcacac tggctctgga
      541 aa
//
LOCUS       KCLJ01001730             744 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 193242cal ultra-conserved element locus
            uce-3560, sequence.
ACCESSION   KCLJ01001730
VERSION     KCLJ01001730.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 744)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 744)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..744
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="193242cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>744
                     /note="ultra-conserved element locus uce-3560"
BASE COUNT          254 a          141 c          145 g          204 t
ORIGIN      
        1 tgttggcata aaagccctgg accagccatg cagatgacaa gtccctttct gaacaccttt
       61 ggagagttat ctgtttgtaa aagcctccta tgtcaaagag gttgaaggaa agcttatgaa
      121 gagagggaga gaaagcaacg gaaaaccaag atcatcagac atgctaaaga aataatgtct
      181 tttctaaatt atgtgcagac ttgtttcagt tttcatattc tttaccaggg ttttttttgg
      241 aagctacaga aaatgagcat aaaaaaagta cttcgccctg caggaataca gaaattgtaa
      301 aagcacaggc agcactacag aggagcagtg ccattcactc acaaagaatt ttgtgcatgt
      361 agatggctga ttaattgctg gcctgcctag acgaagctgc aacgagccag atactgtcag
      421 catgccatct gttaccatgg aaatgcacaa tgttcctgtt tctgacaaac ccttgaatac
      481 tggatagatt gtgccatatg taaataaggc aaattagttt tcctatatct tccagacaag
      541 gttagactaa aagaaaatat atctgtttat atactgtaac ctccaagata tgaactaggc
      601 aaagcttcct cataaaaatc tcattcaatt tgttgttaga actgaaacag tgaggactag
      661 catgacccaa ccagcaatgt ttacaaaagc agtacttaaa aatatgcata ttctatatga
      721 atactacatt caccagactg ttgg
//
LOCUS       KCLJ01001731             748 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 193354cal ultra-conserved element locus
            uce-2887, sequence.
ACCESSION   KCLJ01001731
VERSION     KCLJ01001731.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 748)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 748)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..748
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="193354cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>748
                     /note="ultra-conserved element locus uce-2887"
BASE COUNT          244 a          153 c          126 g          225 t
ORIGIN      
        1 taatagcatc agctcttaag gcctaaaatt gcatagaatc tgattaacct ttcataagaa
       61 gaaaattcaa aaggtaaaat acagttcagc acctattccc agtgcttatt aaatacagga
      121 aataaaggac aagcaagttc ttgcaaatta aagatgtgga gcccagtcat ttcaatccct
      181 ttcaatatga aacaaatcac tcacactggt cacgaagaca gctccctcta cactcaaatt
      241 attcacttga agataagctc ctatcaaact ctttaggggt ttaactaatt tactgcacag
      301 atacggcacg tctgttgtaa taacaggtag gatgtattgg ggtcgaccat ttatcagaat
      361 tagacttctt ttttcaattc acagtgaatt atgctgccta cactgctcct ctttctcaga
      421 gcttcccatc cccttacggc ccctaatgtg gcaggcaaac aaaattgaca gtctcatctt
      481 gtcaacaagg ggtgattctc ctgagaagcc atttaacttt gcagaggaag caatgtatta
      541 atgtgcctgt cccaggaatg ttaatcatct tcaagctccc tctaactttg acatgaacaa
      601 aatcaccaaa tttgtttact aaatgaattg taatatgcta ataagagagc atgacatata
      661 tggtaaagcc aaacagatgg tttgtttact ccactttgca actttataaa tgttgtaact
      721 ctgaagatgt tagtgagaat tattggtt
//
LOCUS       KCLJ01001732             665 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 193463cal ultra-conserved element locus
            uce-2766, sequence.
ACCESSION   KCLJ01001732
VERSION     KCLJ01001732.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 665)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 665)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..665
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="193463cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>665
                     /note="ultra-conserved element locus uce-2766"
BASE COUNT          204 a          142 c          116 g          203 t
ORIGIN      
        1 cttcaagcat ctatttttct ccctggtgca aacagacctg aggaatcttg cagagatcaa
       61 caaaatcttc cacaaatgcc aggcatttct ctcgtggttg tgagcattta atctgctaac
      121 tttgacagaa agagcagtct aatttctaca gcctgcttat tttcaaaaca acaaatattt
      181 actgcatact gcactctaaa ggacccaatt attagtgtac ctctgtttga ttatcaatga
      241 cacagtaata ataccagcag ctgctgaatt gtaagtgaaa ataacccttt gttctcattt
      301 ttcttatctg cagactataa cagcactcat ggggacaata acctatgaaa tagattaaaa
      361 gcctgttaaa tgctattttc agcttggcag atcaccaaac cctagcctac ccttaagctc
      421 tgtttccttt taaatattcc ttttggtata accatgtgac aacagtaacg tgctgtttca
      481 cagtgattaa gtaactgcac aaacaagagg tttcaggttt ataaacagga gctggtctca
      541 caggtgaaca ggactgtgct ccaccaaaga caccaaggtc agaggctgca gtgaaaaaat
      601 ctgttaaaca ggagcacatt gttggttttc catttttggt aagtgttgaa ccttttttga
      661 ctcca
//
LOCUS       KCLJ01001733             570 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 193568cal ultra-conserved element locus
            uce-7552, sequence.
ACCESSION   KCLJ01001733
VERSION     KCLJ01001733.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 570)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 570)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..570
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="193568cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>570
                     /note="ultra-conserved element locus uce-7552"
BASE COUNT          181 a          113 c          113 g          163 t
ORIGIN      
        1 aatcctgagt gctttccagt gaccagaagt gcacagtctc atttttcttc ccgtgaacac
       61 ctcatcactg ttgatcaaca gcatcgggca caagagcttg acccagactt gaaaattttt
      121 cctaaacatg gcaacaagcg caacagatgc aattctttct aggtctctag gtaacatttg
      181 aacctgtgta atgttcgcag cacagcaccg taagtaatat tccaggaaat gcgctgccgc
      241 ttgttaaaaa ggataggacc ccagagatgc ctttaaatat gcctgtaaag tgagaggtgc
      301 caagagaaag ataatatggc tgattatagt tatttacctt acattttcat tcgcccttaa
      361 ctgggtgtaa tttaggggca tgaaatctct tattggaagt gtatttgcat taaacagctc
      421 taagcaacca tgaaagtgca gaagctgaaa aattgacaga ctgggtttct agaatcccaa
      481 agtagcataa taggcataca aacaaatcaa ataaacatgt tttgcttcaa cgatttaaag
      541 aatatggtct ttggagtaat ttgtctcctt
//
LOCUS       KCLJ01001734             674 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 193677cal ultra-conserved element locus
            uce-4504, sequence.
ACCESSION   KCLJ01001734
VERSION     KCLJ01001734.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 674)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 674)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..674
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="193677cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>674
                     /note="ultra-conserved element locus uce-4504"
BASE COUNT          218 a          114 c          112 g          230 t
ORIGIN      
        1 tcactctgga gatgaattaa attgctgtaa aacaaataat ttacatttaa ataacttatc
       61 ttcttttcac ctaatttaaa agtaatcttt actttttctc aactaatacc taaatttatg
      121 agctactttg atcatatttg tgcaataaaa ttgaaaattt taggtatggt aggtaatcag
      181 ttttagtctc ctcatctgtg ttttcaatct cattacagat tgcaattttc agtgcagatt
      241 acatgatgac ccatcagtgg ctttgttgtt tctgaattac tgattccttg actattgcca
      301 gataagaaca aagactatgc atcagtctga cagcttgcaa acagaaaatg ggcttgtagg
      361 attggattta aatcccaggt gtaggggata attaccacat cagtcatgca gtaactgaaa
      421 aatggtattt caacaagaaa aattgcattc cttttatagt gccaacagaa atcatttttt
      481 gaggcttcat actgattcag tgcatcatta cttgtgcact gtactcatta aacgtaatgt
      541 ttgttttgtt tcagatactt ttgtggctga gttagctcga atcaaggttt gtgaaaccct
      601 gacaatgctg aggtcattca aaggtacaat atacattata caagtgaaac agcagagccc
      661 aaaacatcga aaac
//
LOCUS       KCLJ01001735             477 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 193785cal ultra-conserved element locus
            uce-5855, sequence.
ACCESSION   KCLJ01001735
VERSION     KCLJ01001735.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 477)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 477)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..477
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="193785cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>477
                     /note="ultra-conserved element locus uce-5855"
BASE COUNT          146 a           87 c           84 g          160 t
ORIGIN      
        1 tcttcccttc cctagaagtg gcaatctcac acttctggaa ctttgacaca tcactgactg
       61 ttggagaaca tggatgccct gtttaatgct ggttcttggg tcttaaacag ccctccactg
      121 cttttattat accattaatt gtacttaatg cagctgcatt tctagtacgc ttggctaagc
      181 tctgaaaatt aagtagaggg tactttgtta taaaatgcac tgtaatgagc tctggtggga
      241 cagggtctgt taagtttgaa attacctcag gccatttcca aaggtcttct taaaatattt
      301 cacatctata aaagtttgca actagataaa tagccaaagg gttgagaagc tgcagccctg
      361 aattatgcac tgcattaaat atgaataata ccaaattgtt aaatttattt taaacattta
      421 ttatctcaag taatttgtta aacagaaagt tttcaagctg acagcatgta aatttta
//
LOCUS       KCLJ01001736             817 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 193892cal ultra-conserved element locus
            uce-1886, sequence.
ACCESSION   KCLJ01001736
VERSION     KCLJ01001736.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 817)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 817)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..817
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="193892cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>817
                     /note="ultra-conserved element locus uce-1886"
BASE COUNT          246 a          146 c          150 g          275 t
ORIGIN      
        1 tattcattct gccccggcca accatttccc atttcagtca cagactaaat gttttcaaat
       61 tatacaaagt tcaagtcctt tcataaaatc attagtattt ttgttgtatt ggaaatattt
      121 caatagttgc ttttattgaa taaaaagtct ataccatata caaaagaaaa tattgaaaga
      181 aaaatatata tggaaagcct ttatcagtaa atagaattag tctccttgca tttataaatc
      241 aaataaatgg aaagtgtgtt gttatgaaac atgaccatgt cttatctgaa gaagaaaaag
      301 atcacaatgg cattaggaaa tgcttgactt tagttagaga ggcgtaaggg cacaagaaca
      361 gatgatggtg ccctaatagc cctttttaag aatgacaggg ccccgccatt agcatccttt
      421 tatatccttg gaaattgctc atgcctcgct tttatggttc ctatctgcct gactcttttt
      481 tatttctctt tcaatttcat ccgcgctcgg ataagcgcat gctaacacaa tatgattgag
      541 ctgtaaaatg gaacgctgtc gcctctaatc tcttttatgt agatatggag gtacttccac
      601 actccacttc attctctctc cattgttggc ctttttagaa tgtgttgccg agtaatggag
      661 gctcagtcaa atattagagc taggtttcac agggtgtgat aagaagatta tcaggccagc
      721 agtcagatct attgttgttc tttgtgtcag attaaaatat tctgatgtac tgtaacttcg
      781 ttagtaaaat actgaaggtg cttaggggat gctgctt
//
LOCUS       KCLJ01001737             742 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 194006cal ultra-conserved element locus
            uce-655, sequence.
ACCESSION   KCLJ01001737
VERSION     KCLJ01001737.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 742)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 742)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..742
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="194006cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>742
                     /note="ultra-conserved element locus uce-655"
BASE COUNT          217 a          101 c          143 g          281 t
ORIGIN      
        1 tttgtgtttt cttgtaaatg tttcttttcc ccttaaagca acaaatattt catttgtaat
       61 gcttatttta ttacgagctt ctaggagagg acgagcaagg tgtgaggtta taatttgtgg
      121 ttgctgatac caacactgcc acaaaagggt agttgttttt aaaatgacta gctagccgag
      181 tggtagatgt ttaatttttt aaatgccttg tacaaattcc aaaaccaact tcaaaatgtt
      241 ttcacttgta ttgattttat gttgaatgga tcccaagctc tctcctgtca attctatacc
      301 tttgtaagac atttgtatat tgcggaagtg ttcattcgag ctatttaata cctggcactg
      361 ttaatacaca gtactttatt gtacagattg ttttactgtt ttaattgtag ttctgtgtac
      421 ttcggggaaa taggggctgg catgtttttc tttgttttct ggcaatacaa catgtaagaa
      481 tttgaagcat tttgtttgta gatgctagag tgtcagaatc cttttcattt gacttttcta
      541 agaaaagcat tttcagtctt cgtagtgtgc gcttaaggtt ataactgatt ttattgaaaa
      601 tggtttcaaa gtattcagaa ttgtacagga ctgtaaaaat ttgttgacag acattgaagg
      661 aaaagcttat agaagctata aaatatatat taggttctgc agaaaatgga gagttatgta
      721 atatattgta caaatgtaag ca
//
LOCUS       KCLJ01001738             562 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 194116cal ultra-conserved element locus
            uce-1419, sequence.
ACCESSION   KCLJ01001738
VERSION     KCLJ01001738.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 562)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 562)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..562
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="194116cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>562
                     /note="ultra-conserved element locus uce-1419"
BASE COUNT          160 a          115 c          128 g          159 t
ORIGIN      
        1 tcaggcttag gaatacctca catttcattt tggttagcct attatttgta gttttgaaac
       61 tttattggtc cctgatctaa tcttttctga gtatgaaaac attaacatat ggtttaacac
      121 agcacagggc tggaaagtcc atatcccaaa tgcacattgt atgcagggtg acattcacac
      181 taaatatcat cccacagggt ctgtactcca ttttacctgg gattggagag ccatgaaatc
      241 tctggaaaag ttgttcatga gtctgaacca aatggcgtgc agtgtactga gatactagca
      301 gcgtgtgctg ctgccaaagg ttgtggctca aatgtctctc taagtaacat taaaaatctg
      361 ctgcttcatg cctatgaatt tcaatattta tagcgttcaa taaaatggtc cactgtcaga
      421 gagagatgtg ccactgtgca ctctctgagc agatgggctg caatatggca catttacatg
      481 gaccagctgt ggagtgcaga aatgaatgct ggtcagaggc aggctggagg caccacatct
      541 ggaatgcaaa cagagccgca gc
//
LOCUS       KCLJ01001739             635 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 194228cal ultra-conserved element locus
            uce-1499, sequence.
ACCESSION   KCLJ01001739
VERSION     KCLJ01001739.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 635)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 635)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..635
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="194228cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>635
                     /note="ultra-conserved element locus uce-1499"
BASE COUNT          185 a          133 c          128 g          189 t
ORIGIN      
        1 ccctttaata tattgacatt ccagcccttg gaacaaggtc ttcactcctt ttctcatttc
       61 aagatcttgt tttgggagag ctctaacacc tgtccactga tcgcctgcca gtctgcatct
      121 gtgcccagct gacagagctg tctgctttga ctaatgatgt gattgatgga caaaataagg
      181 aagaacacac aaaaaaacat ttctgtctgg tctggtgtgt cagcaagcct tcatcaagtg
      241 gctgctgaag gtatattttg ctgcatgcct cattacacag taatggcatt cccaggcaaa
      301 gctgtttctt ttcatgacac aagacagcag gcagctttat ggactctggg cctatcgagc
      361 ctggaggaga gaagcactaa agagtggtca tttccaaaag tgcctcaagt tgcttttttg
      421 ttgtcatgaa tttaatatga atcaacacaa tatgaaatga gcatgaggaa ttttagtgac
      481 tagtcatttt ttaagactgc tgtctaaaca gccatcaagg ttttcttcta ccaaacctgt
      541 tgcaaaaaga agtcatctgt caattttatt acataaaaaa agtacacaga ggtgtatagt
      601 ccaaacaaat gcctgcttca gtgctaaaca tgtgg
//
LOCUS       KCLJ01001740             832 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 194336cal ultra-conserved element locus
            uce-906, sequence.
ACCESSION   KCLJ01001740
VERSION     KCLJ01001740.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 832)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 832)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..832
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="194336cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>832
                     /note="ultra-conserved element locus uce-906"
BASE COUNT          247 a          194 c          190 g          201 t
ORIGIN      
        1 gagtgcacga agggaggaga atacaacttt gggaacacaa aacctgagct attttagcat
       61 actgtacaca aactccgagt ggcaaacagc gcttttggag aactaccaaa agaaattatt
      121 caagttaagc tttattttgg atatattcct gattaagcct gagcacaatg aaaaaaacag
      181 tgtgaaggca caatgctgaa tggcatctgt gcttagagct tcagaggact gcttactgtc
      241 ataaaactct gtgtgtcacc agctgggggc cggggattta aagatgtcag gaggacctgg
      301 tctctcagat gggataaaga tcagaaggaa agctgtccag gtgatgccca ggcccctgaa
      361 caagcctatc tgcactctca ttcaaatgat aatgagtgtg taaatcacat ctgttccccc
      421 tctgtgcctg tatccttgtc acctgaatag catccccacc aggtatcaaa tgagctccag
      481 gaaataggtt tcttttttat ccaacttcgc tctgaaatga gaaaatgagc accctggcca
      541 ggaggccctg caaaccaaaa gggattgcag tctttgggct cctcgccacc aaggaggctt
      601 aattgtggtc ggcgacgcca agagcctaaa acaaacgccg gcacggagct ggatgctgga
      661 gtccctttcg caacagccac ataaaagtag gttgataatt agtggccatt gactttaatg
      721 atgtaacgcg ctaataatgg cattgaaaat cacccgtcat tgtctgtaat accaacctcg
      781 atcctaccta cgaaacatct ctctgcaccc agcccaagga atgcatggat tt
//
LOCUS       KCLJ01001741             675 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 194446cal ultra-conserved element locus
            uce-215, sequence.
ACCESSION   KCLJ01001741
VERSION     KCLJ01001741.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 675)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 675)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..675
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="194446cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>675
                     /note="ultra-conserved element locus uce-215"
BASE COUNT          198 a          132 c          140 g          205 t
ORIGIN      
        1 catacaacag attgaggctg gtataaaggc ctgggactgt gcaagagcac cctgctgagc
       61 ctcagctgtg cttgcaatta gcaataggca tgaaatgatt attgttgtgg tggctgatgg
      121 caatctgaag tgacaagttt tatgggggaa gttgtagtag ggatgttcag caagtttctg
      181 caaaccatta atcgaaggct gcagcacagt ttagtcaaag ctattttatg tcattccaaa
      241 ggtctcacaa ggatgctgaa agaatatttt tctgctctca gtgccttttt ttctaggtca
      301 gggattcttt actgccctat ttagtgtcaa aaatacccat ttgcctcaaa ttagcagaaa
      361 gcttgtagtt aaggactaga gattaggcat acaaaattac tcagcaggtg actgctgggt
      421 ggatttgggg ttgagaagtc tttaaaactg actacaagac attatatact tctgacaaaa
      481 gaacatagta atcctacctg cttgctttaa ccactgttgt ttgtctatta ttatgtgctt
      541 taatgctcat aagagcaaaa ctactggtga tactactcaa ttaccatagt aactctcccc
      601 tatgacctct catttcagta ctcgctttcc aaccagaacc aatccaagca gggcaaatct
      661 atttaaaact gtgac
//
LOCUS       KCLJ01001742             620 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 194663cal ultra-conserved element locus
            uce-5893, sequence.
ACCESSION   KCLJ01001742
VERSION     KCLJ01001742.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 620)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 620)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..620
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="194663cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>620
                     /note="ultra-conserved element locus uce-5893"
BASE COUNT          145 a          120 c          115 g          240 t
ORIGIN      
        1 tgtatgaacc aagtagctcc ggctgttact tcttattttg catacccaaa ttaggttcaa
       61 acttcggagt tttatttctg agatctgaga aataaaaact caaacaccac atggtattta
      121 ccacatgctg tgactgataa ataacaactg agtctccata aggtcatttc agaaaactgt
      181 gtgtgatgtt tcaacacagt tttctgtgta cgatttctct tcaaatagtt atttttgtat
      241 gtctttattt ttccatatta tttgtgagtt tctcttggtt tggttttggc tatgattttt
      301 taatgagtgg tttaaatgtg ccttcttgtt ttccttatgg cctatgacct atcacctttc
      361 tgttctgtga ctggctgtct ctgcttattc tgcattagga ggtacgtatc tgattgcttt
      421 ccagtcccct cttcttcagt tgctcattct tttattttct tcctcctttt cgttgtagct
      481 tgctttttcc actaacagtg gtgctctgag ggactggcat gtcggtgtga ctcacatgca
      541 ggtgtgttct gcaaaagaag aaagcatttc catgcaaaac agaaaaataa ggatgacctt
      601 ttatcattcc tggaagagca
//
LOCUS       KCLJ01001743             837 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 194769cal ultra-conserved element locus
            uce-62, sequence.
ACCESSION   KCLJ01001743
VERSION     KCLJ01001743.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 837)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 837)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..837
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="194769cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>837
                     /note="ultra-conserved element locus uce-62"
BASE COUNT          289 a          188 c          148 g          212 t
ORIGIN      
        1 ctgactgctt ccaatcatgt ctttccccaa tggcaagcct gtgcaattac cagcactcca
       61 ggaggtctac agacaagcct ttaccctgca aacaaaatac agcttgtagg ccataccagc
      121 tgccaaacca cacacatagt gataggttta aagagggctg aaaatctttc taactccata
      181 gtataggcaa taaaaatata actgtacctg caggaaagaa agctttaaat gacactgtat
      241 aatgcacaca ataatacaaa ctccaactta atcaaaatga taatgacgta tgccaatcct
      301 acattacttg aaattgagcg atttttatgt tctgacaagt ttacagaact aggataaatg
      361 gcatgaatga tttcaatata tgctcatact tttgaaccaa atggtgaagg ttaaaatctt
      421 tcctttcaag ggcctcaatc agccacaaag gaaaacagta atcactgtct tttcagccag
      481 cccaaccgca tttgtcagcc ctttctccgt caatgcagcc agagcaatca acctgccaaa
      541 cattcagaat ggaaaaacaa tctgaaaata cagggtataa tgcacctgcc agtgaaaatg
      601 gccatttcaa gaaaagctag tgatctcagt gaccctgctg aggaggcggt ggtgcaaagg
      661 ggaaagaacc cgtaaaagaa ttcttagtga tctccactct cttgcacatt gacacttcct
      721 tacaaagcat gccaattaca gcttttgtgc tacttaaaaa aaatgaaagc ttttttgggc
      781 aaaataatca cgcaaagaaa cagaaagaca ctgctccttt ttcgatggat tcgcatg
//
LOCUS       KCLJ01001744             548 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 194883cal ultra-conserved element locus
            uce-2938, sequence.
ACCESSION   KCLJ01001744
VERSION     KCLJ01001744.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 548)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 548)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..548
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="194883cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>548
                     /note="ultra-conserved element locus uce-2938"
BASE COUNT          130 a          144 c          146 g          128 t
ORIGIN      
        1 cggcttggaa actcagggag gagacagcag aaattgcttg aaaagctggg gaaggtgggt
       61 gctgaaggcc cgggcaggct gggaagtggc cagcggctag cctgaggagg gtctcacccc
      121 acccagctac gagcacattt cccttctctt tcgctttgtg ttccgtgcag aggtgaaaat
      181 aaaccccgcc ctgccttggg gaggctactt cagacaaaac tgttatccat taacatccaa
      241 ttatcacttg gtccaagcca ttaattataa atcagcctcc taattgggat aattagctct
      301 ctgctactta atgtagtatg actgatgcgt ttggaaagaa ggtaatcagt ccatttgttt
      361 agcgttaggc gaacaaatcc aactctcatg gtttaatttc agccgcagcc ttaccatcag
      421 cattcagagc ccatcgcagc tccgttaatt gtttgggaat cgcggcaggg atgggcacac
      481 gcatctccgc ggggctttca gcagccccca gccaggggat gcggccggac ccgccctccc
      541 tcgagggg
//
LOCUS       KCLJ01001745             705 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 194987cal ultra-conserved element locus
            uce-2823, sequence.
ACCESSION   KCLJ01001745
VERSION     KCLJ01001745.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 705)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 705)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..705
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="194987cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>705
                     /note="ultra-conserved element locus uce-2823"
BASE COUNT          183 a          161 c          129 g          232 t
ORIGIN      
        1 caagatcgaa aacgacgctc caaggtctgt aaatgtgttt gtctttaagg tttgttccag
       61 aggaaaccat gcgtgtctta gctcgctcca taagcaaacc cttacacgat tttaaacatg
      121 ctaatgctca cattctgcat ctcaggttaa tcgagaaggg ttttttgttg gttttctact
      181 agcagcttgc ctacaatcca ccaacccacc actctttatg tatatatgtt gaataattat
      241 gaagctgtga gtatttatca ccttttctga gcagtaagca gaaagaaata caatactatt
      301 acttccagct actggctttc ccaagataat taggtaacac actggactga agccttggtt
      361 agcccaatgc tgttcaagtt aagtgattga catgcctctg tctggctgct ctattaactg
      421 tttcattttg ttgctatttg cagtttgctt ggctaatact tcgaacaaat acagactgtt
      481 tctttagccc cttttttctc tttgaccttc tcctgcccat tttctttgag tcacttcaaa
      541 ctgccttgaa aaggcctgtt gaatgtgcac agtccatcag agtcccaggt tcatcccatt
      601 ccttgccctg aatgctctac ttcaaagatg ggccgcattc tttaattgcc ctttgaatta
      661 atatcaaagg gtcacaatgc gagtgccaga agagaaagag gcttt
//
LOCUS       KCLJ01001746             772 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 195096cal ultra-conserved element locus
            uce-1216, sequence.
ACCESSION   KCLJ01001746
VERSION     KCLJ01001746.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 772)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 772)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..772
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="195096cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>772
                     /note="ultra-conserved element locus uce-1216"
BASE COUNT          230 a          176 c          183 g          183 t
ORIGIN      
        1 tgtgtccttt ggtgtttgca gcaccttcca tcagcctgta cagcagcaat gacaaatgca
       61 tcagtccttc ggcaaacacg agtccagggg agcattgctg ggggctcagt gctgctgcct
      121 gaagggtggc aaaggggaaa gaaatttctt cttacaagga caaaaaacaa acccaaaaac
      181 ctgacccgac agaacaaaaa caaccccaac aagtaccttg tagtctttta aagcctcatg
      241 aatatttagt ttgtcctcat gtaaaatata tgactttgtg taaggatcag gcaaaggagg
      301 tgcatgattt ttttctgatt tatgggccca gcaacggatt attcatagca gagcagctgt
      361 gtggaaagat tcatccactg caaaatgtga ttgtacatca ggcagtgtga gggaacagag
      421 ctatgactaa tggctacttt acatataaat gagaaggttt tcgctaggaa ctgtaaaaaa
      481 atacaatcgt tcagctgacg ggcctggcct ctttatcgaa agtgctgcac aggggccaag
      541 gaaacaagga acaagcctgg ctgaaggcac tgccttctct cacatccttc aacatgcaat
      601 aaatgaggca acagcagtca agacttccaa gggccaaatt tgttgctggc atcaacagac
      661 atttctcctc ctgccttgaa tgcccctctc ctggccaggc tgggatggac cctgctttaa
      721 gcatcatgct caaaagcaga gaggcagcat gagccagggt gcttggcaca ag
//
LOCUS       KCLJ01001747             598 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 195205cal ultra-conserved element locus
            uce-1774, sequence.
ACCESSION   KCLJ01001747
VERSION     KCLJ01001747.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 598)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 598)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..598
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="195205cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>598
                     /note="ultra-conserved element locus uce-1774"
BASE COUNT          185 a           93 c          116 g          204 t
ORIGIN      
        1 tttagagtct ttttctaatg tcattctaaa gttaaaaaac aatttgactt caagggagat
       61 acagcccaat tttttaaaaa cttaatagga ttagtcatgg gaactatttt tagcaaaagt
      121 tcaactttat ccatgtattt taatgtggga aaagtgtgtc cttttccctc tgctaatgtt
      181 tgatgtattc cagccctcct gcgagtgtgt ttgagtatct taggggctct ggagtggagg
      241 agaacttcct ctcggattct ctctgttttc tttcgtgaaa atgacattcc taagctgttt
      301 cactttctga caggaaatgg agccttgcca aaaatgatta aagtccaaga aagcataaca
      361 gttccaaagc tgcagcagtt ctttaggagt cccgagtttg acattgtgtc aaacaaatgt
      421 gaaatattgt ttaataaatt tgaataatac agggaaaggg aaaaatggtt cttggcttat
      481 aatgctggtg ctctttatta agtctgtaaa ggcctgccta gctctaataa attgaaatat
      541 atacataaat atacttgtgc atggataaca gtttaatatt gtaatatata atgaacgg
//
LOCUS       KCLJ01001748             595 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 195315cal ultra-conserved element locus
            uce-2748, sequence.
ACCESSION   KCLJ01001748
VERSION     KCLJ01001748.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 595)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 595)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..595
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="195315cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>595
                     /note="ultra-conserved element locus uce-2748"
BASE COUNT          181 a          129 c          112 g          173 t
ORIGIN      
        1 aaaaggcaaa acaaaacagg tagaattcct ctgttactat taacacctaa aaatatcatc
       61 atgaaacaaa agctttgctc ctctgtccaa tttgatgtct ttttcatgct gcctcagtga
      121 tggccaaata attggttgtt cacttgtgtc cttgtctccc ccgacagttc cacagatgcc
      181 ctgaacaatg ctccaaagac tgctttcagt aggggcaaat cctcattaat cattcctggc
      241 tgacagcaca agggaacacc tgcatctggc gcagggacca agcaggggct tctgggagcg
      301 cgcattaaaa agaccaacca attcaagttg tgagggtagg cttctaatag ccatgtgaaa
      361 aatccctctc tcgctggatt ttcctttcat taaatagcta aaattagacc tgtggctcct
      421 gttgagatta aaatatcaat gtattctaag caaatcaggg aatgaacagt actgtatgtt
      481 atgataaatg gctgctaaat tctttatgtc tagatcaagc aatgttagca ttaaatactg
      541 atgaactgtc acataatttt catttagaaa cgactgcact ttgagcttca tgtcc
//
LOCUS       KCLJ01001749             791 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 195420cal ultra-conserved element locus
            uce-7534, sequence.
ACCESSION   KCLJ01001749
VERSION     KCLJ01001749.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 791)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 791)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..791
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="195420cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>791
                     /note="ultra-conserved element locus uce-7534"
BASE COUNT          245 a          201 c          124 g          221 t
ORIGIN      
        1 gtcataatct tttgcattta tagtccctat ctgactcaag acataaaacc agtctgatct
       61 ggtataacac tgccaaatct gtttcacaca aattctgcct gtctcgcgag agagcgcaca
      121 ccacgcaccc tcattcaaga tatgtaatta aacaagaaag ggttaaagcc tatgttagcc
      181 tattctactt ttctatctgt tactttttaa aagctttcat atgtcttctt ccttgtttct
      241 gaaagctaac cattccttct tcctttcagg caagctgaca tttgacagct taacatagct
      301 gacagggtta cccaacagct caccctccct attctcaatc caattagacc tctaatcctc
      361 cagatgaaag gcccaactac tcacgttcct catgacaacg acagctattg attatttgtc
      421 actacagcta acaccttccc tgtcgaggcc actctgacag aagcaaacct accaaattag
      481 acagcacttt atctgccctg gaggccaaat ggcacaacaa gtaaaggcta ataaatggta
      541 taaaaatgaa caaatcataa cattatgaca ggttgatcgt tgccagcagc ttcacagctc
      601 aagcttgatg ctctgttaga cctgttcctt ctcttttctc ttccactcct gcaccaactt
      661 tgactgaatt aaaggccaga acaattaagg catttgacca gcaaagataa gctaggatag
      721 aagtatcatc aagggacacg aatgtcaata gcagactacc gtttgtcaat aaaaacattc
      781 cagagatgca a
//
LOCUS       KCLJ01001750             487 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 195534cal ultra-conserved element locus
            uce-4573, sequence.
ACCESSION   KCLJ01001750
VERSION     KCLJ01001750.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 487)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 487)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..487
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="195534cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>487
                     /note="ultra-conserved element locus uce-4573"
BASE COUNT          148 a          102 c           89 g          148 t
ORIGIN      
        1 cctgtgcgat taaacagtcc gcgccgtgcg agtgcagaac gctaaacgag cgcaattaat
       61 gcctttgaaa caatttatga tttccggcct acttcaacat gtattagcat atacctggtt
      121 tctttaatat acactttgtt tttccaaaac cacaaacata gttgctggaa tttcatgtgg
      181 aagtgcttaa ggggttgaaa gttaacacct ttgtgagccg agcagtctca cagttgctgc
      241 taaacaaaag cctctttgta gaagctttct cgaaatgttt tcttaacatg ttccaagtag
      301 ttttaggcag gcaactaaag taaacaagat gttaccatga taaaaacact tgtgaaaaca
      361 ttacagagtg cacttagtag tttctttcac ataaactccc cttcgaacac gggactgcca
      421 catctcaggt ctatgtcctt tcttttaata tttgatttaa aaaagccagg attaagcacg
      481 tctaagc
//
LOCUS       KCLJ01001751             490 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 195643cal ultra-conserved element locus
            uce-3678, sequence.
ACCESSION   KCLJ01001751
VERSION     KCLJ01001751.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 490)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 490)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..490
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="195643cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>490
                     /note="ultra-conserved element locus uce-3678"
BASE COUNT          112 a          135 c          109 g          134 t
ORIGIN      
        1 ataacaaatg actgatacag ggagaggaac cagagcgtct gctggcgtca ccctccctcc
       61 ctctctccct ccctcacgct ctttcctcct cgtgtaattt gcattaataa agaggctgtt
      121 ccttgtcgga atgtgtttca tccggtttaa aatcccaggg cgatccacca ggaacagctc
      181 tgggagaatc cgactgtcag agccgacaag acaaatgaat cccggtgtca ggagcgtgtg
      241 gttcaacgat gacagattga gaagaactgt ccccctctcg acaggcgggc ttcattttca
      301 aattaataaa tctgaataaa atattttccc tttcattacg agccgagccc ggatgacagt
      361 tcccgtgaca ggagggagtc gcggtgttga tgaggagact ttgcatgaat tccacctggg
      421 cttcttcggc tttattttta cctgcaattc catccctgtt tctctctctc gtgctcccgt
      481 tccttcaccc
//
LOCUS       KCLJ01001752             798 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 195751cal ultra-conserved element locus
            uce-2698, sequence.
ACCESSION   KCLJ01001752
VERSION     KCLJ01001752.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 798)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 798)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..798
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="195751cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>798
                     /note="ultra-conserved element locus uce-2698"
BASE COUNT          224 a          192 c          146 g          236 t
ORIGIN      
        1 gttaggttgc aaatacctat ggcaattctt ctcaaagctg gtcctccctg catggtaatc
       61 attcaggtgt tgtcttccaa gctggctcct ttacctcgtt agtacaacgt gctagaatat
      121 gctactgccc agtcctcatt aatcttaccc actgcacagt agctgttgtt gagataactg
      181 gcttccatta gcaaccatgt gattggcagg acgataaagt cttttccctt gcaggtcagc
      241 tgctttttaa gaagagggca atcctgctga tccatctttt agctacagtc tctcactgag
      301 tcccaaatct cctgcctttt agctttgata cggttcaagc tttccccctt gtatcagccc
      361 ctacctgtca tcagctcctc tgtaccaaac agccaatatc aggagtttga cctcagggca
      421 cagtccgggt gggcaggtaa aacctgacca ctggacctac ttcctcatct ttcatatcct
      481 gcaattcatg aagaagtatc aaattcaaac taaaaaacag aagcatgacc ttttataaga
      541 accttctgaa aaaggctctg ttgcctttct aagtattctt gaaaagaact gtcatctacc
      601 ctattaagac agaaatgcat cacaaataag gagaagaggg aaagcactga aaatccttac
      661 taaatggtag aagtttttga tgtgtgcctg aaataccttt tggtgatgca cacatcaaat
      721 atgcctacat ctgcaagctc cagctgcaac ccaatagaga gttgctcaaa ctttttctgt
      781 ttataaagta tattaagt
//
LOCUS       KCLJ01001753             685 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 195865cal ultra-conserved element locus
            uce-7473, sequence.
ACCESSION   KCLJ01001753
VERSION     KCLJ01001753.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 685)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 685)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..685
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="195865cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>685
                     /note="ultra-conserved element locus uce-7473"
BASE COUNT          230 a          116 c          132 g          207 t
ORIGIN      
        1 gttcagaata ttattgccta acaattaaat gtgtgtttta catttccagt aatatttaaa
       61 ccttaagccg ctctaattaa gagaaatcaa taaattccta ttgccagctt taaagtttat
      121 ttgctaataa gcaactgggc aagggatgtg tgaaatgaat agttgaagaa aaactctgac
      181 agcaaaagag aggtccagag ggtgaagttg gtttattagg caccgtttgt catgaatggg
      241 tctactgcac gtacaaaagc aaatcccact accttagaag attaattctg aaggaggcac
      301 tcgtgggtca aagtatacat aagcgtgtgc ctaatctcag agaaatcagg ctattttctc
      361 acagcaatta agcagaggtc tagggtttca cccacagtgt atttaaacac aggatacaat
      421 taaaccccaa agtattaata tctgtgctgt gcaaaattgc ccaggaaata gattttgcac
      481 tctttcaaat ggaaagtaag gcaaattaag gagggtgact ttatttgagt aaaaattatc
      541 ctgaaacaaa tgtaagtaat tcataactgt taattcctta tgtacacctt tttcctgctc
      601 ccgtaattta ctctggaatg tgctgttcag tggatataag caatcaacac catctcatga
      661 aaatagtttt gatttcaggg ttagt
//
LOCUS       KCLJ01001754             741 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 195974cal ultra-conserved element locus
            uce-3995, sequence.
ACCESSION   KCLJ01001754
VERSION     KCLJ01001754.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 741)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 741)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..741
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="195974cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>741
                     /note="ultra-conserved element locus uce-3995"
BASE COUNT          214 a          170 c          135 g          222 t
ORIGIN      
        1 tcataatggt ggtagcacaa attagtcatc taatcacatc tcagttctta accaggacac
       61 agaaccacag cagtcaaaac accgacaagt cagagcccga gcacctcacc agccagtgtt
      121 gctttgcagt cacaggaatt ttaagcaaca aggacgcctg aggtgtgttc ttgcccttca
      181 ccttcaggag gggattatgt gctactccac attggtgtgc atccaaccat acctctttgt
      241 agatctcttt tcttctttgg aagcaaacta gaagcctgca ttagcatgct gtattttgct
      301 ctcaccacta gaaatactga gggtgctatt tgtaattgta ttcttttaag aggtttgttc
      361 tctgcagctg ttttctgctt gcagtgtatt ttgtgtaatc agcacatcat cataaataca
      421 ttggctgttc ccccgaggga agctgtcact gtttaattta cagaacaacc tggccaatgt
      481 gaattctaac actacagcac tatggcaaga agttaccaca ctcggaaaaa caggtttcta
      541 tgaattttta tatcaagagc tggtcccagg acaatttagt ttctagaaat agattgattt
      601 taaaagcact ctatacactg gatggaatag attctttccc atttacagcc tcttaaggca
      661 gcaccaaatt cactctcaca ttattttaaa ggtgacaatc ttacacgacc atcttcactg
      721 acttttacca aaagaaggca c
//
LOCUS       KCLJ01001755             633 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 196085cal ultra-conserved element locus
            uce-5457, sequence.
ACCESSION   KCLJ01001755
VERSION     KCLJ01001755.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 633)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 633)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..633
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="196085cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>633
                     /note="ultra-conserved element locus uce-5457"
BASE COUNT          176 a          125 c          166 g          166 t
ORIGIN      
        1 tccataattc atggggacgc tgcgttccca accgcgccgg ggccgtcttc attacatcct
       61 ctaaattgtt taaagaaatg gtacatcata aacgttggaa gtaccagcaa gagcaaatca
      121 cagccttgtc cagaggctat tcttgctctg cctgagcatc gggaagccaa agcatatgtt
      181 ggatgttagc cggggtgtac acaacgtgtc ctatttattc aaggtttgct ttgaagccac
      241 aacttacaag tttgtttctt agggggacat gtcagactgc atttagcatt tgttggtatt
      301 aggatactcc tgaatagcaa aaaggcaaca ggggggagaa ggcggctgct atctgagcag
      361 ggatctgtca gatccactta ggggctgcgg gagaactgga gaggaggcac agggagaggc
      421 tgggctcagc tcaggatctt gggcaggatt gttccaaagc actttaaatg gaagaattaa
      481 tctccattta aattatatag agttcattat gataagaact aggaaaacca ttaaagcagg
      541 gatccagctg gccagagtgt gtcaatgtaa agtgttcagc aattccaagt ggcacggttc
      601 tcttcagata cattatttta ggtgcttgca ggc
//
LOCUS       KCLJ01001756             569 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 196193cal ultra-conserved element locus
            uce-6912, sequence.
ACCESSION   KCLJ01001756
VERSION     KCLJ01001756.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 569)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 569)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..569
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="196193cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>569
                     /note="ultra-conserved element locus uce-6912"
BASE COUNT          183 a          109 c          113 g          164 t
ORIGIN      
        1 gagaaagaga gaaagaaaca gaagatcaaa agagagcttt tttttccctt ttgcttttca
       61 tgcctcagaa cctcaaagga ggtcggggaa caatcaggct taggggtctc gtgtgctttc
      121 tggcaattag actcagctga tgggctgaaa gggattgaat ggcagggttc aaggcccttc
      181 tccagagctt cagacaacag gcttttccaa agcagcagag cagcagacac cactgaaata
      241 atttcaaatg gagacttaca gccagggatt cattaattca ccggcctaaa caattactgg
      301 aacatataat gtctctatat acactttgat aaagactgtc atcctagacc ttcattttcc
      361 ccatttttat tagagatttt taatgtcagg tttgaaaaga accctttatt tcttcaatta
      421 tcaaattaaa ccttttatat aaattccaga atttttgttt tatggctgca attgatttga
      481 attacaagag gagactgaga aagttttgta aagcatcctt aaacactcag tcataaatag
      541 gatgggagcc tcagcagcaa gagatccca
//
LOCUS       KCLJ01001757             529 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 196301cal ultra-conserved element locus
            uce-6964, sequence.
ACCESSION   KCLJ01001757
VERSION     KCLJ01001757.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 529)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 529)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..529
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="196301cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>529
                     /note="ultra-conserved element locus uce-6964"
BASE COUNT          151 a          105 c          138 g          135 t
ORIGIN      
        1 ggattcctgc agggaagctc ctgcagagca acaggctgca gcctcttcct ttgcttggat
       61 ataaatgggg aaattatttg aatttctcca cccccaggtg aatgatttag atggccttga
      121 ccccaggctg actgcaggga ttaatgtggg ataatgattg ctgaggctat cattgcagca
      181 ggcatcatta attatcctta ttgattggag ctttcaaaga taaagcatta tgctgactgg
      241 aaaataccct cttcctgcaa ggtcaaggct aaaatagggc agctaaataa ttgcattaac
      301 aaacaaagaa ataaaaataa cctcttgcag agttgtgtaa ttaagatcca attacagcgt
      361 tcggccgtgc cggcagagcg gccttgcctt gtgtgggatg tgggatagag gagggggatc
      421 tcaggggatc ctgccagctt cacctgcagc ccccttggaa atactcctgg gatgggaaat
      481 taaaagggtc agatggagaa aatgataaat ggcctagatc actttgggg
//
LOCUS       KCLJ01001758             561 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 196407cal ultra-conserved element locus
            uce-2517, sequence.
ACCESSION   KCLJ01001758
VERSION     KCLJ01001758.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 561)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 561)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..561
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="196407cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>561
                     /note="ultra-conserved element locus uce-2517"
BASE COUNT          175 a          104 c          101 g          181 t
ORIGIN      
        1 ccccttgatt gtatcctcac tgcaattttc ctcattaggt gttatcaaca tggaagctta
       61 agcttacaga gggtttgagg catataaatc ttggcttctt ttttaattgc aaagaattgt
      121 gactattacg tagctgatct tgcaaattca aaaatattca gtactttaat tatgcttact
      181 ttatttaagt gctaaaggcc acagcaggcc tgcaattgct agcatgctaa cagcatataa
      241 tacagccaat tgcaaacagc agtctaattt gttgatttca actgaggtgt aattatattg
      301 cttcatttgc tgagcaaatc atacgagagc ttctctaaat cagcctgatt gtgtaatgaa
      361 gagctaatta caaacagcag tgttcttgca gtaaatttat ggtgactgct aatgccaggt
      421 tggcaccact atgacaatgg ctcattagta catttacaaa agcaacagtg gaattctgcc
      481 caaagcacag caactgttct ttatttcagg agatgagagt gattaaccct tacattgtta
      541 ctacaaagaa ttatatagca t
//
LOCUS       KCLJ01001759             685 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 196511cal ultra-conserved element locus
            uce-7342, sequence.
ACCESSION   KCLJ01001759
VERSION     KCLJ01001759.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 685)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 685)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..685
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="196511cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>685
                     /note="ultra-conserved element locus uce-7342"
BASE COUNT          193 a          147 c          135 g          210 t
ORIGIN      
        1 tcctctgctg gcgttatacc ctttccccac tttattttta atcccaccac tatttaatat
       61 ttattatttc tttcagttca agaggagatg cagatgctaa tgttagtaat tttttagaga
      121 tgggattgtt ttgtcagcat gcttgcagat gatgcctatt gcctctcaga gtgctctggc
      181 tcaggcggca cggaaacagg ttcactcttc caaggagcac tctgcataat gaaattcctg
      241 ggctgactgc acaataagtg cttttgcttc atcacagtca tgctttctta catcattaca
      301 gttaaatttc caggcaccaa aacctacatt gaccctgaaa cctacgagga cccaaataga
      361 gctgtccatc aattcgccaa ggagctagat gcctcttgta ttaaaattga gcgtgtgatt
      421 ggcgcaggta aggctgccgt ggcttcctga ttcaactgtt ccatttagcc gggatcgaga
      481 ctcattcatc ataatgacag gcaaataatt atacctcagg tatagaagaa ctttttgaat
      541 ttgccagagt ggttaagagc aatgaagccg cactcgcttc tggaaaagcc caactacaac
      601 taaataaatg agtaaattaa aagtcttgct tgacattgaa agcctatggg tttttaatca
      661 agtatctgct gttaaaattg gaact
//
LOCUS       KCLJ01001760             676 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 196621cal ultra-conserved element locus
            uce-6117, sequence.
ACCESSION   KCLJ01001760
VERSION     KCLJ01001760.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 676)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 676)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..676
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="196621cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>676
                     /note="ultra-conserved element locus uce-6117"
BASE COUNT          233 a          130 c          101 g          212 t
ORIGIN      
        1 agtgcctctg tctctcctgt ggcaaccaaa taaagttgtc aaaattattt ttaaataatg
       61 ataaggtatc taaaccaaat actgtatgga aaaataagga atatatcagc atttaaaatg
      121 tatatgctgc agagcatttt tactgtcatt tctttaagaa aagcagatct aattagctgt
      181 atctccaaag tgtttaccta gcatttttat tatgtattat aacattttgc ttagagttga
      241 catttttatt ctgacaagca ctgtctggag agctctcaat aaataataca tttacaattt
      301 tcagtaaata agcactggac acaaatcatt atccttactt acagctgccc ctctctaata
      361 gtgcttttac aagtaaggtg actattcagt ctaatgcaat actctcagtg ctgggaagag
      421 attttcattc attaccccag tcacaagcac ttaaagcact tttaggccct gttgcaaaac
      481 agcaggaatg gcaaagcaag taagaacaac ttaaactaaa gtccatcacc aaagaaatct
      541 gaggccattc accctccaga acttggaaaa taatggcaag atcagccatg ttcaagccaa
      601 tccttatatt tatttacatt agcaatatta ggaaggaaag tatcacatct agtccctact
      661 attattgcca ttttaa
//
LOCUS       KCLJ01001761             334 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 196732cal ultra-conserved element locus
            uce-7364, sequence.
ACCESSION   KCLJ01001761
VERSION     KCLJ01001761.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 334)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 334)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..334
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="196732cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>334
                     /note="ultra-conserved element locus uce-7364"
BASE COUNT          115 a           61 c           55 g          103 t
ORIGIN      
        1 catgctcatc ttaagttgta actgagaatg tcccttcttt aaattaaaaa gggaagtcta
       61 ggctgtaaat gagaaaaata taacatcagg ctccaaaaag ccactttcat tttcatataa
      121 atatgtaacc atcatttgtt taactcacac caagctatca aattttgtgg tgggctataa
      181 acttgttgag tcattagcct ggctgcttaa tggaggaaaa ctaaatttct gttcctgcat
      241 aatgacactt attcactgta gacatttgca tcacttggaa acgataaaac ctcatccttc
      301 ataatgaagt tctgagctga caaagaggaa aata
//
LOCUS       KCLJ01001762             440 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 196843cal ultra-conserved element locus
            uce-2955, sequence.
ACCESSION   KCLJ01001762
VERSION     KCLJ01001762.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 440)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 440)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..440
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="196843cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>440
                     /note="ultra-conserved element locus uce-2955"
BASE COUNT          119 a          113 c          106 g          102 t
ORIGIN      
        1 gccaacctgt gccctgctcc agctctgcat tgttcacctg ccaggagctg ggctcgggcc
       61 ctggggagag caaaacctgt ttgggttgac attgagtatc cttggtgcag caagtcagga
      121 gctccgaggt atccgtcacc gcggctgcct gcaggcaggc tggagccaag gaacttgcct
      181 gagcagctag taaaatttta atgcactctg tagtgtggtc atgtcatact cagttatggc
      241 aaataatccc agatgcctgc agaggtaaaa tggagctgta atgtgcttgc ctcctaaccc
      301 gagctgacag caatgatgta cgactaccat tagcggaaaa tatcacttca actaacccat
      361 gatccagctc cgctaagggt cacattatcc aggaggaaca aattacactc ccaaagtaaa
      421 tacaaatttt ctacacgaaa
//
LOCUS       KCLJ01001763             382 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 196949cal ultra-conserved element locus
            uce-2165, sequence.
ACCESSION   KCLJ01001763
VERSION     KCLJ01001763.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 382)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 382)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..382
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="196949cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>382
                     /note="ultra-conserved element locus uce-2165"
BASE COUNT          125 a           74 c           61 g          122 t
ORIGIN      
        1 actcatcaaa agcatcctaa acttatcgtg aagggaactg gcttcttata tgactgtgac
       61 agacctcaat gtgacacata atggtatgta accaccatca aggcaatttt tttttttgct
      121 tacccatcat atcttttgcc ttcttgaaat gtttatacca ccttccaaat tcctgacatt
      181 ttgctgctga gacatttgca tagtaagtgc tgttcacaat ggaagaaatc atactctgtg
      241 tgaaaagggg agaagtctgt aatacagagc agtacaagtc aaagcacaaa ttatttcaat
      301 tgttgccaat atatttttaa agtttgagaa ccatgtttta aaatcctatt ccgaagcctt
      361 tttgagcata aaaacaaacc aa
//
LOCUS       KCLJ01001764             422 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 197056cal ultra-conserved element locus
            uce-7609, sequence.
ACCESSION   KCLJ01001764
VERSION     KCLJ01001764.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 422)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 422)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..422
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="197056cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>422
                     /note="ultra-conserved element locus uce-7609"
BASE COUNT          112 a           95 c           98 g          117 t
ORIGIN      
        1 tgcctaaaga aggaggaata ttaaaatttc cttgctgttc tgtctgagtg gttaatgagg
       61 ttctaggtag cgtgatgaat atgcagcgcc atcgatgtgt gtgtgtgttt taatcacagc
      121 tggaatgcaa aatcaggccc cacctttcaa ctctatctcc atcatgctga gagagtgaga
      181 gagagcgaga ctgagactgc tagacagctc gaaagagatt gcagctcaga tgtcctggaa
      241 aacagcaaat ccctcagacc tggcagattc cgttaccatg agaactgcag atatttccat
      301 tgtgatggct tgctctagca gccatctgtt acacccattt gattaggaag tacagttcag
      361 cttgtatggg attttcactg caccttatcc catggcagcg cacagaaact ctctctctct
      421 ct
//
LOCUS       KCLJ01001765             429 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 197161cal ultra-conserved element locus
            uce-2129, sequence.
ACCESSION   KCLJ01001765
VERSION     KCLJ01001765.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 429)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 429)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..429
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="197161cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>429
                     /note="ultra-conserved element locus uce-2129"
BASE COUNT          148 a           69 c           78 g          134 t
ORIGIN      
        1 ggagatcgtc ttggtaactt cttgtattta gataagaaag ggaaacatgg gagctctagt
       61 ctcttgagct tttcctaggt acctactaat tgttaattat tagagactaa ctaagtcact
      121 gaagtgagtc gtttggctgg tgtctcaaat gctgtcattt actactacac aaatcagcct
      181 agtgatagag tgtctttaaa ttaggttaca accatgcagt tattggacag ggagtaattg
      241 ataaaaccat tagtaacact tgtagagata acagctagca aaatcatgca accataatta
      301 ttcctaatgg atacatgcta taaattgtgt caagaaaaaa aatcttgcat tatctttcaa
      361 tcaaatttga cagtcctagt agattactgt agactaaatg ctcatgtata aaaaaatgac
      421 ctatcagaa
//
LOCUS       KCLJ01001766             599 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 197269cal ultra-conserved element locus
            uce-4792, sequence.
ACCESSION   KCLJ01001766
VERSION     KCLJ01001766.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 599)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 599)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..599
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="197269cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>599
                     /note="ultra-conserved element locus uce-4792"
BASE COUNT          151 a          120 c          117 g          211 t
ORIGIN      
        1 attactgttt aatgaccaga aaagagattc tatgccacta gattttggat acagacattg
       61 ttgcctttgt ggcaagtgcc gggaatactc aaactaaata atgacatatg tctcagatga
      121 ctcaatttgt tttgttttca tcccagagcc taattcagta gatttatctg ctacaattac
      181 agtgctttga tcactccaga ataggtggtg tagtgtgggg tgtagctgtc cttttccaat
      241 tcactctcct tatcaggata catgtctgtt gatttgtggg aagctggctg tttttcgttc
      301 ctgacaaact ccagtgatta aaatgtagtg gcttgctctt gttcccctga taaaggtgac
      361 agctgcagag tttccagtgt tagtggatat ggtccatgca gattgctttt taatgaaagc
      421 aatatattat cttacctaga ggccctgcag ccttaccttg ttaatgtatt ctagcttggc
      481 accacattca tctataaatt agttgtatta aacatgcttc ttactattta tccagtctct
      541 aaagacttgt ggttcttttg gttgagaact tcgcttcata cctcctccag cagcaccat
//
LOCUS       KCLJ01001767             838 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 197377cal ultra-conserved element locus
            uce-940, sequence.
ACCESSION   KCLJ01001767
VERSION     KCLJ01001767.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 838)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 838)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..838
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="197377cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>838
                     /note="ultra-conserved element locus uce-940"
BASE COUNT          252 a          153 c          137 g          296 t
ORIGIN      
        1 ttgtactatc aaaaatggat tacagaaatt caaatgtgtt tgtaaatgtc gctacagatt
       61 aaccttgcag tataatccag tatgatccac attacttttt aacatgatgg ataggttacc
      121 atccaaatta tttgtaagac ataaatgacc attgtatgtc tctttgaagt tagaggatgt
      181 atttggtatg actcaatcat taaatcatct tacaaatgtc taacaaagca cctgcattta
      241 accatacttc ctatatttac atttttggcc tctttctaag atcaggcata aatccatcag
      301 gccactttag aacttcagaa cttccttctt ttacatatat actgctcatt atccagaagt
      361 tattctgtcc cctgtgttaa attactttat gctgcagctt aaacgaacat gtcttgcttt
      421 catctggcat ttcaaatagg gcaaagactg ctgtacaatt tccaaacaca actgtgctaa
      481 cagagatgaa ttactacagt ttatataatt tatattagga attcatagac ctagcaaaag
      541 ggattagtac attttatttc agggtaggag atgatcctgt cattaatggt cgatactttc
      601 atcatctttt aaacctgagg aatttcctgg gtgacaagac tgtaaggaca tatcagggat
      661 tcacagctgt gagctttatc tggccgtgta ctgctttact ttcagtatgt ggactacgtt
      721 ccatcaaaac tggattagac tgtcaatcat gtcctgcaat gtatattgta ttatgatttt
      781 ttgaaaatgt cactgagatc agagtaattt cttggctaat tgcatcttgt ctcttctt
//
LOCUS       KCLJ01001768             361 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 197488cal ultra-conserved element locus
            uce-4198, sequence.
ACCESSION   KCLJ01001768
VERSION     KCLJ01001768.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 361)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 361)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..361
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="197488cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>361
                     /note="ultra-conserved element locus uce-4198"
BASE COUNT           61 a           84 c           50 g          166 t
ORIGIN      
        1 ctggggcttt agaccctttc ctttgcagtt tctttctgtt cttgggttct ccaagtttca
       61 tgattttttg tatgttttgt ttctttaact tgcttcaaac tgctcatgtt gcccatcccc
      121 ttccccacac acccctcctc ccttacactc ctgttttcac ttgtaaattc tttctgtatc
      181 acataactat atgatgttga gttgctgttt gtatgatttt tctcttaagt tacatcttta
      241 ttatatttta gggcccaggg atcatcctga tattgttgat tcatttatgc aactcctggc
      301 acaggtgtgt tttagtttct tattcattca ctttctgttc tctctctttc tctttttaat
      361 t
//
LOCUS       KCLJ01001769             771 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 197586cal ultra-conserved element locus
            uce-6347, sequence.
ACCESSION   KCLJ01001769
VERSION     KCLJ01001769.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 771)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 771)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..771
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="197586cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>771
                     /note="ultra-conserved element locus uce-6347"
BASE COUNT          208 a          184 c          236 g          143 t
ORIGIN      
        1 tcttttggaa aggctggctg agcctccaaa gaaggccaat tgcccctctg gcccatttcc
       61 ataccacacc tccacgctat ccaaggaaga tcaggtaagg aacatgctcc tcatctctga
      121 gcaaggagtc cttacctgag aagaactggc tgatggagtg aggcagaaga gtgaggaagg
      181 ccagtgggtc cgcaaaggac atggaaagtg tagcagaaat gtaagccatg cctgccacca
      241 gggagtcaag gcaagccagg gaggtgtaga ggcagaacat gatgaagttt cgcatgttcc
      301 tgctcccgat gcagttccct gtgaagaaac agtggtggtc atgcctctgg gtgactctgg
      361 cacacagtct acagaagtga gtgccgggca aggctgagcc aggggacctg cttccatcca
      421 gccagtctgc cacttcggct cctttgccca agttaaagtc cttgcccaag tcctcggggg
      481 agttctggat cacaaggacg tagttgccca gggcattagc tgagaggaag aggaagaggg
      541 ccccatgcag cagagcaggc gagaaaagta gggtggtgga agggtctctg aacatgctgg
      601 ggatgaagac aaagatctgg aggacgaagg tcactaggga gatgcacaag aagtaggctg
      661 gagcgacaac attgagcaac ctgagaacta gcattgcgga ttacgttcct gcgggggaaa
      721 gcaaggagag aaggaacatc accgctccgg ctgcacactt catccttcca t
//
LOCUS       KCLJ01001770             728 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 197693cal ultra-conserved element locus
            uce-4586, sequence.
ACCESSION   KCLJ01001770
VERSION     KCLJ01001770.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 728)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 728)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..728
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="197693cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>728
                     /note="ultra-conserved element locus uce-4586"
BASE COUNT          212 a          127 c          173 g          216 t
ORIGIN      
        1 cgctcctcct ccagcaaacg cttgtcctaa actgagcacc gtagaataaa aatggaaaca
       61 taaaaatagc agttggaaag ataaaacagc atttatagta ctaataaaac cgttgtggct
      121 tccacaggaa aacatgctct gtaacctaat gcttacctgg gaagactgtc gagtttcgga
      181 gagttatagc tgtttttgta agagaagcac agagatttgc ttcagggctg agtgatagat
      241 tctcctgcct ggagcatccc agtgtgttta tacatggctt gtatggcagc tttcataaga
      301 catttacccc atgatttgcg atgagcttat gtgtgaataa ttaatggcaa ttaatcctta
      361 attacagtaa ttaggcaagt cacaggaaat taagctgcag ctggagaaga ccatgcctgg
      421 gaagagagga ttgggggctg tgtgaatgtg ccattcactg acaacattac gaggatgagc
      481 agcattcagc agctttggca tttctattgg cagccttggg taggacaaga acgctcaaca
      541 ttagcagcaa tctatagttg tctacaagag tttttagttc aagtgccaaa atgttatgtt
      601 gcatatggtg attatctaag tttattggtt gccataattc aaatgggtgt aattgttttt
      661 ggcttgatgg tgacattaga aactgaagct tttatgtgtt cgtaggttct gctggcatca
      721 gccatggt
//
LOCUS       KCLJ01001771             700 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 197806cal ultra-conserved element locus
            uce-6909, sequence.
ACCESSION   KCLJ01001771
VERSION     KCLJ01001771.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 700)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 700)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..700
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="197806cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>700
                     /note="ultra-conserved element locus uce-6909"
BASE COUNT          209 a          127 c          158 g          206 t
ORIGIN      
        1 cttcatggat tttaagtgtt ttaaatgaaa cagtgcttac actaatactg ttaaattagc
       61 aatgaaaata attcatgcaa gctgccttta attaagtgcc agcgatttat ttgtttgttt
      121 ctcttttgcc aggaaaagaa gaatatattg cgacattcaa gggatcagag tacttctgct
      181 atgatttatc tcagaacccc atacagagca gcagtgatga aataactctg tcctttaaaa
      241 cgctgcagag gaacggactg atgcttcaca caggaaaatc ggccgattat gtcaatcttg
      301 cactgaaaaa tggagctgtc tccttggtca ttaatttggg ctcaggggcc tttgaagcac
      361 tggtggaacc tgtgaatggg aaatttaatg acaatgcctg gcatgatgtg aaagtaacca
      421 ggaatctgcg tcaggtaaca gtacaatgga tacaagaata actgactttg ttatgagtaa
      481 atgcttgatg atttgttgga tgtttagcag gcatttggtt tatttgcaca aggaaggata
      541 ttcctgccac acttgagcag gggcatatct agaaagtagc agggcaagca gctgtcgaga
      601 cagtaccttt tcaagacttg actacagtgc aactgtctgc ccttgcagcc ttgcgttagt
      661 cgaggccaat gaactgcaac tcgaaatgtt taatatcttt
//
LOCUS       KCLJ01001772             624 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 197916cal ultra-conserved element locus
            uce-5581, sequence.
ACCESSION   KCLJ01001772
VERSION     KCLJ01001772.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 624)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 624)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..624
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="197916cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>624
                     /note="ultra-conserved element locus uce-5581"
BASE COUNT          214 a          121 c          110 g          179 t
ORIGIN      
        1 ggcatagact aagaatttgc taagggtatg ttttcaaagg gaatagctgt tgcttgttca
       61 tggcttaaac attatactat gccagtaata aaataccagt gatgcatgca aatggaaaat
      121 cgtgctgcaa aaaggttaat tccattggaa gaaaccaagt ccctggataa aaagcatatc
      181 tcagccacct gactaacaca cagacatttc agtacagttt tattgtatac aaaaaatcta
      241 ataatatcct gcttttttcc ctaagattca gcaggtaaaa gctctgattg aatttcatct
      301 tgatttcatt aaatattcat aaaggccaat tagaagggca gctaagtagg ccacaaggct
      361 cccttccatc atcctgtcaa aggcagtcca tcagacagtc ctgtttgcat tagggcctgt
      421 agtcaatatc ttcattcaat ctttatgtag tatccctcta aatcactgct ccatcccact
      481 ttacggcttt tatggacaga caagggggga aaaaaatcta ataattctga aggcaagatg
      541 cttactcggt agaaagcaaa atgcaaatga gaaaaaacat cctcaatcaa atgttggaat
      601 gaaaatcttt tctttaatga gcaa
//
LOCUS       KCLJ01001773             530 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 198026cal ultra-conserved element locus
            uce-3345, sequence.
ACCESSION   KCLJ01001773
VERSION     KCLJ01001773.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 530)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 530)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..530
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="198026cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>530
                     /note="ultra-conserved element locus uce-3345"
BASE COUNT          155 a          109 c           93 g          173 t
ORIGIN      
        1 atgaagaagt ggaaattgag ctttctgttc ttgtgatttc ctagcattca aagagatagc
       61 aaatattcta ttggttaaca tttaacccaa actaataggt ccaatctcac acactcaaat
      121 aaatcataat gtcttttcaa ttagtttgcg cttttgctcg ctgctgtcct gaataattag
      181 gaaaacaatt cacatttcgc taggagataa tatgaagtgt tattcctgtg ataattacta
      241 agctgcagtt cagtttccct gactcccacc aggtcaccag ggcacaaaag aggacaccat
      301 gagagcatta atgagctctc attgaagatg ttaaaaagct tgtattgatc tgtttgtcca
      361 agaaggagat atttaagcct ttctgctgag ggcaggagag acagagattc atatcacaaa
      421 gccttttatc caaccccttc tgtttctagc ttcaatattg cccagtctca gcatgtctgg
      481 ttctggaggt catactttta aactttcaca acatcttttt ctctttcttc
//
LOCUS       KCLJ01001774             765 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 198133cal ultra-conserved element locus
            uce-4998, sequence.
ACCESSION   KCLJ01001774
VERSION     KCLJ01001774.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 765)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 765)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..765
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="198133cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>765
                     /note="ultra-conserved element locus uce-4998"
BASE COUNT          250 a          129 c          127 g          259 t
ORIGIN      
        1 gctttataaa gcattaaagt tctaagtatg tcacatggga gctgtaaggt ttaaatgaat
       61 aaatgtattt aatgcataaa atgtctaggc taatttttta attcctttac aaacatattg
      121 aaaaaccata ctttattcat ccatcttagt tatactgctg tggttgtggt aatttaatat
      181 tcctgctctt tgctaatctt ctggttcaac agaagtaaac aataggtttc ataaattaaa
      241 aatacgctcc tcagaacatg cttctaaaga taaaaaacaa ggctgtaaac atttatgact
      301 gaaacaaact agattgttca aatactgcca tgatgtatca tgtatatcaa tatggcactg
      361 atatcagtta gaatgcaaac aaggttttaa atgatgtgcc ccttcatttc agctggagaa
      421 tccgctttac accatctgcc tatcagatgg ttaggaacca ggactgcgta ttaatgccac
      481 atgttcgatt ttcattcctc ttgtaatggt tagattcata ttgctaatag ctgtgcatga
      541 gcactgtcga tgaaatttgt gtgacgatgg agtgatgaga tatttataaa gctgcctgtc
      601 tcactgcata atcagcagga agaatgccag acataaacaa cttatcaatt tcagaatatt
      661 aatgacaact accattgcct ttaatccact gaatattttg gcctgaataa agtaaatatt
      721 tgtaaagaac ctatttggcg tgatccttat tctttcattt atgtt
//
LOCUS       KCLJ01001775             751 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 198246cal ultra-conserved element locus
            uce-6320, sequence.
ACCESSION   KCLJ01001775
VERSION     KCLJ01001775.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 751)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 751)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..751
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="198246cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>751
                     /note="ultra-conserved element locus uce-6320"
BASE COUNT          247 a          128 c          168 g          208 t
ORIGIN      
        1 tgtgcttctg acgctgtgtt tgtgcaatta cccaaaacaa ttttaagaac taggcagtct
       61 gattcccatt ttgagagaga gctggcataa aaagacagac tacagcaatg tatttttctg
      121 attggtttcc ttgtgtatca ggatcagtcc cctcatctgt ctggtgagga gtcagaaaaa
      181 aaaagaatag atgaaatatt aaatgctttc agaaaatgag ggggaaagtg caccagcttt
      241 taaagagaat cagcatgtat catttctgct tccattggct gtttatccaa catcaataca
      301 acactttagg agccaaatta ctaaacaagc tgccaattag gcttgcagtc agctggatag
      361 attagtggct aagagaggca gatacaagat tttcatctct tgagccaatt acgcaagtga
      421 attaccatcc acaatgctcc ttggaagatt tgaggtagaa agactgactc tgctgtgata
      481 gacataagtg agatccaggg tagggggtaa gggttagcag gccatgtatt gcaaaaatta
      541 cccaagcaaa aagagatcct tctaggaaag gatttaaagg atttaaggct gctgggagcg
      601 atagaagagg aaataatagt tgtggcatgc taaggcattg ctgtttggct cacaagtctt
      661 aatcatacaa aagaaagatg aaagggtaag actatattta tgtacagtgc cattttctca
      721 gaactgttta aaaccctttt cttaacatca g
//
LOCUS       KCLJ01001776             337 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 198358cal ultra-conserved element locus
            uce-4869, sequence.
ACCESSION   KCLJ01001776
VERSION     KCLJ01001776.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 337)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 337)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..337
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="198358cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>337
                     /note="ultra-conserved element locus uce-4869"
BASE COUNT           85 a           74 c           82 g           96 t
ORIGIN      
        1 tacctccccc aggcctgcgg gaagcagaga ttgcatctgc ctttaattac tccctctcta
       61 catatcagat gctcgtgcac cttctgcaca tgaatgctga ttaattgcag ggttaggctc
      121 cgaggcaggc cggaccacat tatttctgat gtttgctctt ttcacgagga gaataaatgc
      181 catgaatcca cagtaatcag tggcttttag cttgtcactc ttatgacact ctttacttag
      241 accaggaaat ggcaaatgtg gtggaaataa gaactttatt atcttttctc caaaagggag
      301 gtgtctgggg gaagaaggtg gtaggggcat ctcgagg
//
LOCUS       KCLJ01001777             688 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 198455cal ultra-conserved element locus
            uce-367, sequence.
ACCESSION   KCLJ01001777
VERSION     KCLJ01001777.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 688)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 688)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..688
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="198455cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>688
                     /note="ultra-conserved element locus uce-367"
BASE COUNT          222 a          118 c          120 g          228 t
ORIGIN      
        1 tttacagtta actgaggtaa catcctctca atatatgaga ttcttgttaa attcacaagt
       61 ttttaccaaa accatgtgga ggatgcaaat ttgaaataga gaaaaacatt gggagactct
      121 tcagatacat tgtgctttaa tttataatgt ataatctata catactgtat aaactatata
      181 aagaatcaag caatcatgtc tttcagtgtt atctattgcc atcattcccc atgcattgag
      241 gctctcacta tagctattac tataaaacgt tccctaagta cataaaggct ctaatcgtta
      301 agatttttat taccagccac acatacagag ctgcaaattg ccttgtttca gatttattat
      361 gtattactct agaaattcta taaagatcaa aagaactgat tacaatgttg acctttgcat
      421 taactcatct gaatttaaat tcaagtgttt gatttgggaa aataagtcca tttatcatag
      481 gtctgctact gaggggattg tgcagccctg attgggagtg ctgagaccaa atttatttat
      541 tgagcatggg cttgaaaatt gtttgtagga caagaggaac gaaagtttga cctgccattg
      601 tgttgctccc agggaacaat gtggcagctg cccttttcaa atatctggca gcgctgaaca
      661 gcaatttata gtttaaatac atttaact
//
LOCUS       KCLJ01001778             522 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 198559cal ultra-conserved element locus
            uce-2763, sequence.
ACCESSION   KCLJ01001778
VERSION     KCLJ01001778.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 522)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 522)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..522
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="198559cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>522
                     /note="ultra-conserved element locus uce-2763"
BASE COUNT          173 a          102 c           70 g          177 t
ORIGIN      
        1 cttgaatcaa tttaattgca tcagtgtttc tcagctacca caccagaata tgttgttctt
       61 gagtttaaag ggtctgttcc tacctacagc agtctctaaa taaacctata aatccttgtt
      121 ctgtagcaca tgaattatca gtagcttcaa aataaatgaa gacaaaaatg gttgaatatt
      181 taaacgtgta gcaactccat cccatgatag atcatttcaa accaaaattc atttttttct
      241 ttgatatcta ctactgctat aaacttccag tttatcatat aacattacaa tttatggtat
      301 aaccagcttg tgtactgact ataaaccctt tgtcaatgcc actgtaaaga ctttatagtc
      361 cataaataat agaagagtga tagtatctat ccttcttatt ttgcccagca catccagaat
      421 atagggctct aaacatgtca gaggatctgc ttgttttaca tacaatatag gttatgttac
      481 atttctctct ggcttacaca aagcccattc aaataaatag aa
//
LOCUS       KCLJ01001779             670 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 198664cal ultra-conserved element locus
            uce-2574, sequence.
ACCESSION   KCLJ01001779
VERSION     KCLJ01001779.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 670)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 670)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..670
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="198664cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>670
                     /note="ultra-conserved element locus uce-2574"
BASE COUNT          183 a          116 c          150 g          221 t
ORIGIN      
        1 cctttttcag ttcaacgaaa agttactagt tttagtgata tttctcagtg acttaaagca
       61 aaaatctgag gaagtagcag agggagaagt acagaatgat gctgttgcat actttttttt
      121 tttcctctgg taactgaagg ttaaatgagt agcaagcaga atgccttaaa caagattggt
      181 atattgatta aaacgctgat ttaacagctc gctttctccc tttggaaacc tggaaaagat
      241 aagccagctg ctgtctaaga gtgctgagtg tccactgaga gtacactatc tatcatcaca
      301 atatggtgat gagaggtgtt ttatgtttgt gttaatttcc cccactaaat cagtaattat
      361 tacaatcctg tccctgctgt ttaccctgca gctgtttttc catttgtcga gagagcgggt
      421 gttctcagag gaccgcacgc gcttctatgg tgcagaaatt gtctctgccc tggactatct
      481 gcattctggg aagattgtgt accgtgatct caaggttgta atcaaatttt tgcagaggct
      541 atggggacaa acacaaagta attataaagt tgcactattc agagttaatg ggtctgtgtt
      601 gagttttaag ttctggagga agttgtttga tatagtaatc agatgggtac gttccctcac
      661 tttattttga
//
LOCUS       KCLJ01001780             749 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 198777cal ultra-conserved element locus
            uce-288, sequence.
ACCESSION   KCLJ01001780
VERSION     KCLJ01001780.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 749)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 749)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..749
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="198777cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>749
                     /note="ultra-conserved element locus uce-288"
BASE COUNT          216 a          158 c          117 g          258 t
ORIGIN      
        1 ggattctaat cttcacatac gagatggcct cgaataattt ctgtgggttt tataggcaat
       61 tctgtggtga tcaaactact gtaaagagag acctgtatca acccatacct tctttcaaac
      121 atataatcac aggtgtgggt ggcccttctt tcttttgtgc catggtaatt tcttcatagg
      181 tggtacctga caagtccttt tttaccctta gagttttttg ttcagattcc attcacttca
      241 aaatatcatt accattgcaa acaaggaaaa tgtgtttatc agaaactgca aactccttta
      301 gggcctcata ggattaatca cggttataaa gttttattaa acacaatttt tgtttaatga
      361 caagctccac cagtccttcc cattccaaac caatcctgtc cttagggtgt atctagcaca
      421 gcagattgtt ttcaacagac tctcaagaca atccctatta ctttgtcatg cacagagata
      481 tttttcttcc tggataattt gaacttcctt aaaaatcaca tctgtttcat actttattta
      541 tttgtaattt aaatccttaa attgaatctt tcattactaa catctgggct tgaaatgcag
      601 cccacttgaa aaaatacaaa ttttatttta tttgtagtta cttcactcag tagcattggt
      661 acaaacattc cctggccaga ggcaaaacag ccgggtatct taaagctgtg atgccgtacc
      721 acgtgtaata tggctcactt gaatgtccc
//
LOCUS       KCLJ01001781             698 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 198889cal ultra-conserved element locus
            uce-222, sequence.
ACCESSION   KCLJ01001781
VERSION     KCLJ01001781.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 698)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 698)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..698
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="198889cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>698
                     /note="ultra-conserved element locus uce-222"
BASE COUNT          209 a          123 c          156 g          210 t
ORIGIN      
        1 gggctctgca agctgttggg ctgtgtgtcc tattgattta atatgctcct aatcagtaca
       61 taaagctata ggcctgcagt gttaattttt catatgctta caaagtaccc tttgattttc
      121 tgtcacgcgt taattacagc gttttgccat taaataggaa gctttgtgta aactaattac
      181 taggtaatca ttgtctaccg ccagccctac cttttatttt attcgagaaa tgcacagatc
      241 tcagtctgga accactatac cttccagcca ttagctctca ctaattcata gcattattgt
      301 gctaagattg taggagttgt ggtatcagtg ctgttaatta ccggagtaaa cagttgaaat
      361 ggtgccaagg tctattgtac aaggcagagg aaaaggaggt ttaaatgtta cttccaccat
      421 ctggggactg gaggagaggc aaatgctaga aaacagcagt gaggcaatat cagaacttca
      481 gctccagggt ttgaggccat atggatccag aatattttga atcaattgaa tttaagtgcc
      541 agtttgtagc aataacagtg gggaaggaga ggataaagca ggagcactaa agaaatctga
      601 aatgccttaa tgttggtgca gccaataaaa tgcctgcttg gattatttta aaaatgtttg
      661 ttttgctaaa atccagtaac gcataggcaa ctctggga
//
LOCUS       KCLJ01001782             449 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 198998cal ultra-conserved element locus
            uce-4359, sequence.
ACCESSION   KCLJ01001782
VERSION     KCLJ01001782.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 449)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 449)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..449
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="198998cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>449
                     /note="ultra-conserved element locus uce-4359"
BASE COUNT          137 a           74 c           90 g          148 t
ORIGIN      
        1 aagcaccaaa ctcttgatgg atgctgtgtt tgtaggagct gtaaatgtaa attgcttttc
       61 ttctggccac ttatgtttta tttgaaacgt acaaaatctg tgtagttcct gagagctggc
      121 ctagagaaca gcagcactcc caagtagttt gtctcctatc aaatggcatt aataatttag
      181 tctctaatta aaagtgaggt caaacaatga aaaatgactg agctaaatgg ttacgctgtg
      241 atgtattaaa gtgcctggtg ggttttaatg gatggaagga gcattgttgt ttgtttatgt
      301 acaaaacact ttcagtcaaa gactgtagga gtcccaagga aatgtattta actaacatct
      361 tttacaggtt actgagtcaa tgtcttaaag agacaatttt tgcacacctt ttatatcctt
      421 caaattgctc agctacttgt aaaacagct
//
LOCUS       KCLJ01001783             693 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 199101cal ultra-conserved element locus
            uce-1329, sequence.
ACCESSION   KCLJ01001783
VERSION     KCLJ01001783.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 693)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 693)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..693
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="199101cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>693
                     /note="ultra-conserved element locus uce-1329"
BASE COUNT          237 a          137 c          111 g          208 t
ORIGIN      
        1 gttctgaaaa gtgaacccca ctgctaatgt ttttatttga ataaattatt acccaacaca
       61 gcaaccatca acattttaca gatttctgta atttttccgg ccctaatgcc agtcactatt
      121 gggagcattt agttataaat tgtctttcaa taaaagtaaa agctcccaaa acaacaaaat
      181 gaaaagacac agcagcttaa atcaaggaag tcaatttcca catgccgatc ctaaatattt
      241 catagcccta ttttattctg acatttgtag atgactaaag tgttacaaag gaaataaaat
      301 gctgattaaa gagttcactg tcataaaggt tactgaattg taaatggccc tttccatctt
      361 cctgttaata ggtacccagc tgtaaacatc atgaaggatg tgacgggagg cctgtgctgc
      421 tcctttagga gtcgtatata cattaatcac tgaatcacca agccatgctt aattgcaagt
      481 tgtatatcac acaaatccat ggtaagtaga aggaaactca ttattgctgc ttcataacta
      541 ctgggtactt ctcattttaa ccttctcaca cctgggacac tgttgtttta caatgtgaat
      601 gcagaaaagg cattaagtca ctaattatag taacactgta tgttgccccg ctgcttgatt
      661 tttcaaaata aaacaaacaa caacagagaa aaa
//
LOCUS       KCLJ01001784             417 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 199213cal ultra-conserved element locus
            uce-2331, sequence.
ACCESSION   KCLJ01001784
VERSION     KCLJ01001784.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 417)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 417)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..417
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="199213cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>417
                     /note="ultra-conserved element locus uce-2331"
BASE COUNT          148 a           85 c           76 g          108 t
ORIGIN      
        1 attgtttggc tccattgaga agctataaat ttcatctatt gaacattagc taaaaaatta
       61 cacgtgttta tcatctggat tattctcaga ttaatagaga taaatggcaa aacataatca
      121 gcaccaactc tgcaacttaa tcattgcatc tgagctatag gaaacactta attactctca
      181 tttactaggt gcaatctaat gaggagacat tagccaaatg aaaagaatgc agtacaaaca
      241 aacaaaatag ttataccatc attaaaaaca aactctgaca gtgcaggtga cagcgtgtgc
      301 aggataaatt accataatgt cctaaatgct gagctgtcag catgctaatg ccggatcgga
      361 tacccaggga atgtcggcac cggagctgtc agaaccgggg atcatcaatc acctccc
//
LOCUS       KCLJ01001785             561 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 199318cal ultra-conserved element locus
            uce-6812, sequence.
ACCESSION   KCLJ01001785
VERSION     KCLJ01001785.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 561)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 561)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..561
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="199318cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>561
                     /note="ultra-conserved element locus uce-6812"
BASE COUNT          169 a          101 c          107 g          184 t
ORIGIN      
        1 tgctgcattg tcaaggaaaa gggtttggag tactgtcctt tagggagagc tgtggctgag
       61 tgtcaccatc tgtattatgg gagggtattt caagatgaca ttccttctgc aaggagaaaa
      121 acctctgaag ccataaagtg ttaacttttt gtttttccag tagcctttca tatatcttac
      181 ttatttaaac tcactttgat ggtattggaa acacatttgc aggtaaatta catacatagt
      241 ccttttattg gatattgatt gtactgcctt gcattccaag gcagacttaa ttcaacaatt
      301 ccctaattag ttaaagtcat aacctatgtc ttgtattcat ttaccattaa ttaaacctta
      361 gctgtttatt acgctgcagt ccaaatccaa tagcagaccc atagagccat ggaaaaggga
      421 ctgggaggtc aatattgaaa atatatggtg taaagtccca ctgatggctg cattgttcac
      481 aatcaatatg gtcaatgcaa cacaactttc ttagttgcta tgtcagcaag acaaaaagtc
      541 aattctaatg ttatgctagt g
//
LOCUS       KCLJ01001786             739 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 199426cal ultra-conserved element locus
            uce-3340, sequence.
ACCESSION   KCLJ01001786
VERSION     KCLJ01001786.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 739)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 739)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..739
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="199426cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>739
                     /note="ultra-conserved element locus uce-3340"
BASE COUNT          228 a          180 c          118 g          213 t
ORIGIN      
        1 tatggacagc agaactaaaa atatttacaa agagtcttct tctagagcaa gaagtgtatt
       61 ttaacggtaa aacaggatcg ccactatcaa aggtgcggtc ctgctcccgg ctggttaacg
      121 acattggctg aagttctatg caagctcatc atcattcttt agaatgtggt ttgccactcc
      181 acaccagtta accttataat cactacataa aatgctgttc ctcaacccat gcttacttat
      241 ttctggtaca caaaacacac ctcatcttct tcatcagtgc tctttcctga tggcacatta
      301 gaagtatttt ttgtgtcctc ccctaaagca gaagcatcac cattagaagc cagggttcct
      361 tgttccgctt cccattcctg caatacctcc tctaagttaa accgacgcct gtagtttaca
      421 aagaagttct tcacttggcc aacagtcttg ttgccaatta catctgcaat agcttgaaaa
      481 tctttaccat attttcggac acctggaagg caaagtaaat aacatagctg tgaagaatca
      541 gtcagacaca gctacgtgtg atgtaagaga gaacctatgg gacctgcaaa cctcgctaat
      601 taggagaact tctcaattaa atttccatta aaacaaagta attcttaata gcacagctat
      661 caacatacaa atcaagaact ttattaatca ttacccattc ttagatcctg gcttacctct
      721 caacctggcc cctgacaaa
//
LOCUS       KCLJ01001787             684 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 199535cal ultra-conserved element locus
            uce-2742, sequence.
ACCESSION   KCLJ01001787
VERSION     KCLJ01001787.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 684)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 684)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..684
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="199535cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>684
                     /note="ultra-conserved element locus uce-2742"
BASE COUNT          230 a          115 c          129 g          210 t
ORIGIN      
        1 gtgagttttg gggtgctttg ggggggcttt ccatgcataa ttctccctga tttaccagtg
       61 caagacaagg tagtaagaca aggccattca cgtgctgaca tcaatttttc aagcaatctg
      121 agatcttaaa ctgttcacgg atagcagaac tagcattaga atgctaaaac agtacctatc
      181 atatttcata atgtatgtca taatgaacaa aagccttttt ttcactgtgc taaagtaaca
      241 atctagactt gttgtaagta tgttattctt acaagtagtt cgcagttatt cttgaaggca
      301 agtcttggag tttccttagc atagtgctgc tggggaaaat tttcagcatg tccatcttca
      361 tctctagcct gaagggaaat ataatggcct atttagggac ttacaaataa tggaagaaaa
      421 aaatagctaa aagcataaca gctcagatca ttaaaacaga cgggaatccc aaaatacaac
      481 attattaaaa agtttctttt cagtacacct tttagatatg agaacttggg atgctgtttt
      541 cttacatagc ttagattgaa catgcaaatt cattgtggag taataattag aacaacaaaa
      601 gacaaaacca aaatgaaata tttgagctgg aaactgagta actcagggtt tcaatttact
      661 ccatggcatt tttcaggatt acat
//
LOCUS       KCLJ01001788             528 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 199640cal ultra-conserved element locus
            uce-7442, sequence.
ACCESSION   KCLJ01001788
VERSION     KCLJ01001788.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 528)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 528)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..528
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="199640cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>528
                     /note="ultra-conserved element locus uce-7442"
BASE COUNT          143 a          124 c          140 g          121 t
ORIGIN      
        1 tctaaacatg gattatcttt ccaggacatt tgtttcggga gcgagttgtg ctaagcaaag
       61 gtacgtcaat tgataataaa cctgctccac actgtcattt gtgggtgatt tgaggaaaac
      121 cagaccatgt aatcaggtct aaggggtccc taataccaga gacgctggtg ctgtcagcta
      181 tagaaaataa ttagaacgtt atccctgtgg caaggagaat gtaaatacat ctaaaatacg
      241 acataatgtc attctcctct gtaagccagg ggatctgctt caaataaaag ggccattaac
      301 acaacaatta aagccgaggg ggccggtgaa gtagggagct ggcctggtgc agggcgaggc
      361 gagcggcgta aatctttcgc catcccagcc aggaatgtga ctattagccc tctcatgacc
      421 cgagggcttc ccaataatgc atctgctctc tgtcagggcc aggatttcgt aacgtcctcc
      481 ggagcgagcc cagggctgac tccacggtgc ggcgccagag cgggagcc
//
LOCUS       KCLJ01001789             409 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 199745cal ultra-conserved element locus
            uce-7689, sequence.
ACCESSION   KCLJ01001789
VERSION     KCLJ01001789.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 409)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 409)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..409
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="199745cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>409
                     /note="ultra-conserved element locus uce-7689"
BASE COUNT          158 a           58 c           86 g          107 t
ORIGIN      
        1 cctccccaat taaacagcaa attatactta tcaaagaaaa gaaggtaaag aaaaatgaga
       61 aatctttaat tactagtata gtggcatgaa aagctgttga tccccttaga aacatacatg
      121 gccaattatc aaaaaatata agcgatgcag aaagaaaggt ttgtctaata agtatgaatc
      181 gcagggccat ttagaacatc agtgttaaag cattagagtt aaatggaaaa gtaaaaaggg
      241 gctgatggtt ttaactgttt cacaggagga caagaggttg atactgataa gacaagcagt
      301 atagtgaagt taattatctg cggcccttgg tgcacaaagc tttttgagct ggtgattaat
      361 agagataaac cattcaaact tcacatttct aaggtgaatg aagatggca
//
LOCUS       KCLJ01001790             683 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 199851cal ultra-conserved element locus
            uce-5951, sequence.
ACCESSION   KCLJ01001790
VERSION     KCLJ01001790.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 683)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 683)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..683
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="199851cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>683
                     /note="ultra-conserved element locus uce-5951"
BASE COUNT          234 a          124 c          124 g          201 t
ORIGIN      
        1 ctgtcatgcc tgcgaggtta cagcacagac ctaaaagaag gtatggtgta agatcaatgt
       61 taaggaaaga gtttcattta aaagaccatc ttttcccatc agacatgata ggagatttat
      121 tattccaata ttattgttga aactagaaaa aaataaacag gaacatatat tttcacttta
      181 tgactctgaa caacatttca tactgtaaac atatcttggt ctataacatt tacccactaa
      241 tttcaataca gtccttattg ctagctcggc agagcctctc cagaacattg tgttaatgat
      301 taatatgaag tcagtggaat tccacagttg ctgagagtct tgtgcccaag aatgaactgc
      361 attgctaaat cagcaaagac agttgtcaag gtaacctcta tgtaatctat ttaactggct
      421 cccaaaacac caatcaaggt cagataacgc actcaagcac catatgaaca cactcatacg
      481 gcataaagct ttgtatcaag acagcaggga ggaaaaaacc tcattaggaa gcaaaaaaaa
      541 attcagtttt gagaagtgtt aattgggatt gcagttagct ttgtggggaa agcatgctgc
      601 tcatctgaat atgttttatc tgtagtagaa gtaatttcac tccagttcag tttgaatggt
      661 aatatccttc tactagtgtt aaa
//
LOCUS       KCLJ01001791             630 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 199960cal ultra-conserved element locus
            uce-4787, sequence.
ACCESSION   KCLJ01001791
VERSION     KCLJ01001791.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 630)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 630)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..630
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="199960cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>630
                     /note="ultra-conserved element locus uce-4787"
BASE COUNT          156 a          150 c          184 g          140 t
ORIGIN      
        1 aggcaggggg gtccacaggg cttcctttct gtttggcttg ttggctggat cgctccaggc
       61 tggctctgct caggtctagt catgctgagg aggtggtgaa aacaccaagt gtggctgcag
      121 gcaagtccct gcccaggtca cgatgctgcg ccgcagccag cgagcaggtg gaaggtgcca
      181 actccatgct gcctctggtt accttcttgg tgcactgtct aacagtattg attaactccg
      241 aaatgaccat gtccacgcat ttcaggcaag gttctttaat cttcttcacc tgctttttca
      301 caatggtctc aaaggccatg tcaggtgtga agagaccggt tctaaacacc cagggtgggg
      361 acaagacaag gcaggaaggg gagaaggggc aaggagaatg tcacagagtt acacacacat
      421 cttggagcag gcaccaccat caccaaaacc cgggacattt gggctgggaa atccctgact
      481 gaagttcatt aaaaataagg atgcttggca cttgcaagga aggaggtgct gagggcaaat
      541 caatcttagc tggacagcca tagccaggtc accattcaac ctcaagggtg gcaggggctg
      601 agtatttgac ctcgagttgt gcaggagatg
//
LOCUS       KCLJ01001792             510 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 200057cal ultra-conserved element locus
            uce-6538, sequence.
ACCESSION   KCLJ01001792
VERSION     KCLJ01001792.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 510)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 510)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..510
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="200057cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>510
                     /note="ultra-conserved element locus uce-6538"
BASE COUNT          179 a           91 c           96 g          144 t
ORIGIN      
        1 cctaccctag ctcaagtcac ttaggaagcc tttatgtaga ttttacactt aattaacata
       61 acctcatcag acttggtatt ttctggaatt tgcagaaact ggatgtctta agaatggctg
      121 cagatgaagt cgtaaggatt gctttgctga gaaagaggaa gaaaaatact gtatacagcg
      181 aagaaaaact tggattagaa gatggattta gtgggttaag aagtcacaga actttgacaa
      241 agcacaactt tactaataca aataagaacc ctgagctgca tttgaattca catcacacca
      301 cacctggtaa gaattagtct agcacagcat catcaatcat agtgtggttg tcagttttga
      361 catcctttaa gtctacgttg tatgcttaat gactacatta cagaaaatgt aaacagacac
      421 caaacattaa ggtatgccct atactaaagt tgctgtacag caccaacagt gttttatata
      481 gagagtgaat tagtaacaca agctgctata
//
LOCUS       KCLJ01001793             561 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 200164cal ultra-conserved element locus
            uce-7706, sequence.
ACCESSION   KCLJ01001793
VERSION     KCLJ01001793.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 561)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 561)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..561
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="200164cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>561
                     /note="ultra-conserved element locus uce-7706"
BASE COUNT          154 a           96 c          114 g          197 t
ORIGIN      
        1 ttaggtgttt ggtaattggc acagaattag cctaaaattg gactaggatt tactgtaatt
       61 ctgaaatttg tagtgaatct tctgtgcctg atttaaaagt gaaggtggta ttttatttct
      121 cagttgaagc atcatttttc catattgcct ttctctcaga aatcaattct aaaagtgctg
      181 tggctataaa attgaaatgc acaaggaatc taatgtatgc atatttttat gcttttgaat
      241 agaagtgggg tcctctctcc tgagacatcc atctcctgaa ctttctcggt taatctccgc
      301 ccacagctct ctttccaaag gagagagaaa tttccagtgg ccagtattgg catttgtaat
      361 ccagcatcat gatctggaag gacttgaaat agcgatgaaa caagccttac ggaaatctgc
      421 ttgcagagtc tttgccatgg aggtattcat gtactgatgg ctctaatgtg gttgtaaatt
      481 ctgccttgga atttttttaa gattatgcta tgttggctat ttgtcatttt attagctaca
      541 gagcaataaa gacctttgca t
//
LOCUS       KCLJ01001794             652 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 200273cal ultra-conserved element locus
            uce-3657, sequence.
ACCESSION   KCLJ01001794
VERSION     KCLJ01001794.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 652)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 652)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..652
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="200273cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>652
                     /note="ultra-conserved element locus uce-3657"
BASE COUNT          201 a          126 c          124 g          201 t
ORIGIN      
        1 tatcacaaca atcaagtcac gagggtccac actgaagcca atgagaatta gacacaagca
       61 ttttcttaaa aggcataagc acttagttct agaatgagag ctggtacacc aaatacattg
      121 tatcaacttt cctgccacac agacttgaat caaacacatc aaaaccttga tactggccat
      181 gaactcaata tttctattgc atttcatgat taggaaatac aatacctctg tctgaagtat
      241 ggcagctctc tgttctttgg cagtaaggga ctctttaagc acttcaatgt gttgcttgca
      301 atctgaattc tgattgctaa gggtttcaag cttagtttgt aaggcaagaa gttctgattc
      361 tttctttgag agttcttgtt tcagttgatc aatctgcagt aggtcattaa ctttgtctcc
      421 aattcatagc tccactggaa atctgaaagg tgtgaatgac catgatatga caaatcagac
      481 acctgtgaat tctggaagag acttcaattg tgtttctttc aatttaatgc agaatgaatg
      541 ccctgttgtt gcagaagtta aaaggaaaat cttgatttag tctataaatt caccatggac
      601 ctcacttaag ttcaaaggca tgtatcccat gtgaggcaag tctggcagga ca
//
LOCUS       KCLJ01001795             671 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 200383cal ultra-conserved element locus
            uce-1169, sequence.
ACCESSION   KCLJ01001795
VERSION     KCLJ01001795.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 671)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 671)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..671
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="200383cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>671
                     /note="ultra-conserved element locus uce-1169"
BASE COUNT          210 a          125 c          114 g          222 t
ORIGIN      
        1 tgagatgtta ccaccactga tgttattttg aagataatct gtgatacacc taagagtgaa
       61 tttacttatc attaaaaagg tcttttgttt ttcctgttaa aaaatatttc tgttaatgtg
      121 catcttggga aaatagcaaa tttttgtggt ttgaattttt ttttaactgt gaaaagcctg
      181 agcattaacc gatctagatt ggactgggta ctcactctgt tgcacagctc ttcaaacgtg
      241 aagtctgcaa tggttccaca tgctttattc agccccagct ctctgccttg cacttttaga
      301 atccttggtc tagttactat gggaacatga acaaagactc aatcttctct ggataattac
      361 tataaaattc atctcttaca gataggaaat gcatagcttc atgaataata gcacatgatt
      421 caacacataa attagacaaa atgctgatac aatgactgcc acttgagtgt ggcatcaacc
      481 catatacagc aatggaactt attaattggt cagtggagat tgggcattgt gttctaaatg
      541 tattctcttt caagagaaat taacttacgt acaatcattt tgtttctgag ccagctcatc
      601 aaacaactta tccatgacag cctccacatc agcttcactt gtgctacagt gaaaagaata
      661 atagaatatg a
//
LOCUS       KCLJ01001796             511 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 200491cal ultra-conserved element locus
            uce-5295, sequence.
ACCESSION   KCLJ01001796
VERSION     KCLJ01001796.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 511)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 511)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..511
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="200491cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>511
                     /note="ultra-conserved element locus uce-5295"
BASE COUNT          167 a           76 c          102 g          166 t
ORIGIN      
        1 tttttaagca gaagtattag caatctgcaa ttcaaagtga ggggttgagg gtcttcccat
       61 tttgttttta agaaggtcac agtgaaagct tgtgattgaa tattttgcat ggaactgcct
      121 atgacaaaga gaaagacagg gtttgtcaga gtactgtgaa aagaaagatc tgtgttagat
      181 ttttaaggta tatttgaaag aatgaaataa aaaaatgctt tcaaatcctc agggactttg
      241 caatttatca agaaagacac attcttccta atgaaaggtt actgaccttc gtgaatgtga
      301 cagttcaatt acagcccatt catatgcaga gcagtcgttg ataaaggatt taggaaatgt
      361 gactagcata gcaaatgtct agaaaattat tattgtggag atataaataa gattcagtca
      421 ggtagtagaa ccttttcttc tctggcccag caacccatta gatttgcttc agtgaataca
      481 ttgacttttt cctcttcttt ttctactaat a
//
LOCUS       KCLJ01001797             483 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 200600cal ultra-conserved element locus
            uce-6986, sequence.
ACCESSION   KCLJ01001797
VERSION     KCLJ01001797.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 483)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 483)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..483
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="200600cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>483
                     /note="ultra-conserved element locus uce-6986"
BASE COUNT          155 a           84 c           73 g          171 t
ORIGIN      
        1 gtggttggag aaaccaaaaa accttagatc aatgatcaaa ctttcctagt agatggcttt
       61 tatttttaca aaatatttgc ttccagcaga gtatatctta atttacgaat gcagaaatct
      121 gtcattaagc tttgacccag cttcatggca ttgtcaaatg caataacgta tcttttaata
      181 gttttatatc aagtaaggac ataacatatc attagtttaa atgtatttgc aagcaattac
      241 ccccaccagg atatttgtga atgctcatgc aaaattgatg aaattctgac atgcttaaac
      301 attgttcatt tagctctatt ccttatgtat agaaaaaata gaataaataa ttctgctgcc
      361 acttgcaaac tactgctcgg cattttcatt ctgttcgtgg cttctgtcct gcctttaaac
      421 tatagccctt ggtgatcatt tggaaaaaca gtttcatata tgtttaattt taaatagatg
      481 tac
//
LOCUS       KCLJ01001798             664 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 200707cal ultra-conserved element locus
            uce-3746, sequence.
ACCESSION   KCLJ01001798
VERSION     KCLJ01001798.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 664)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 664)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..664
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="200707cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>664
                     /note="ultra-conserved element locus uce-3746"
BASE COUNT          205 a          118 c          122 g          219 t
ORIGIN      
        1 taggttctat ccttaggggc tgatgttcta ccagaatata aactccagac acctcgcatc
       61 aacaagttta ctatattgca ctacagtcct ttcaaagccg tctgggactg gctcattttg
      121 ttgctggtca tatacactgc catattcacc ccttactctg ctgccttcct tctgaatgac
      181 agtgaggatc ggaagaggag agagtgtgga tattcctgca gcccactgaa tgttgtagac
      241 ttaattgtgg atattatgtt tatcattgac attctaataa acttcagaac aacatatgta
      301 aaccagaatg aagaagtggt aagtgatcca gcaaaaatag caattcacta cttcaaaggc
      361 tggttcctaa ttgacatggt tgctgcaata ccttttgacc tgctgatttt tggctctggc
      421 tctgaagagg taagcttaaa tgaataagaa atcttaattg tcatttaata gctgcttagt
      481 atttccatcc catcttttaa agttaaacta aaattaaatc ttagaataag gcacaatgtt
      541 agctttcatt gagaagagaa aacattgaat gattcagcta gcatttttca gttatactat
      601 atttgacact gtctttagaa ataataaata tattgtgtat aggacttggt ggttttatat
      661 aaga
//
LOCUS       KCLJ01001799             414 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 200812cal ultra-conserved element locus
            uce-5578, sequence.
ACCESSION   KCLJ01001799
VERSION     KCLJ01001799.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 414)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 414)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..414
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="200812cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>414
                     /note="ultra-conserved element locus uce-5578"
BASE COUNT          138 a           71 c           68 g          137 t
ORIGIN      
        1 tgtacacgca gttgtatgta ccaaagatag agttttaaaa taatttacta ctgatgtatc
       61 tgctgcaaaa ttaatttaat atggatttac aatgtgctct gtctcttgac caacataagc
      121 aatttcagtt tgacatcaat tagtgagtag cttttactct tatagacata tttataatgg
      181 aaaggagtgc atttaggctt taaggtcctg ccaactaatc aatttgatga actaattgat
      241 aataaatgtt aattgacaac taacagcagt caattaattg catttcaaat gcagctccag
      301 gaagctgagt tgaacattat tctacctcaa gctactcaaa taatagctca gcaatgactt
      361 tgcaacaggc ttcaaaggtc aacgtgggct actttcctat ttgtcataag atct
//
LOCUS       KCLJ01001800             388 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 200906cal ultra-conserved element locus
            uce-1450, sequence.
ACCESSION   KCLJ01001800
VERSION     KCLJ01001800.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 388)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 388)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..388
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="200906cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>388
                     /note="ultra-conserved element locus uce-1450"
BASE COUNT          129 a           66 c           78 g          115 t
ORIGIN      
        1 tccagaatca gagataaaat gatttaggtg aaattatttt tctccggtga ccttgcccaa
       61 taatagaaca gtacaaaatg cagtaatttc ctttttctaa acacacgtgt ctattttaag
      121 ggaaagaaat acttttatgg tttcaggaaa aagtcttgga gaccttgaaa aagcaaataa
      181 aaggaaacag agaatgcagg ccactgagca cagctctgca gttgcacatc tgattctctg
      241 ccttggcaat gttaatgaac ctcaaatcct ccctataatt agatgaggga attgcttata
      301 ttttcaaaca gatgatgctg ctgtaatgaa acgattgaca gggaacttaa aagtgtctac
      361 agtagtcatt tagtttccgg gttttggg
//
LOCUS       KCLJ01001801             531 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 201010cal ultra-conserved element locus
            uce-4570, sequence.
ACCESSION   KCLJ01001801
VERSION     KCLJ01001801.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 531)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 531)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..531
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="201010cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>531
                     /note="ultra-conserved element locus uce-4570"
BASE COUNT          125 a          114 c          132 g          160 t
ORIGIN      
        1 atcactcctc tttatctcac catttcctat gagaggcggc aaggttgggg ctttggaagg
       61 tggaacgggg ttcagtcttg gaagcattcc attaacttgt ttcaaccttt ctaatttcac
      121 ttgctccatc catttggtcc ctgtcatgtt cctcctggcc tgtaagccaa gtgctgtggt
      181 ggctgtggaa atggtagagt ccatgattgg ggtttcatcg atgacactga ggtctcctac
      241 actaccacca ccggtcagag taagctcgat cccattgttg gaatagttgc tgatggggga
      301 ctgttcgctg ctgcatgtag actgaccacc agggcttggc tgagatgtct gttggaggga
      361 agtcaggtga gaattaagca tgttaaccag agtgctgcat agaaaagttc agccttaaat
      421 gataacagtg attgggcttc aactgcaaaa attgcctttc acatgttgct ggtggtatac
      481 aatgtatctc cataagacat atctgagtta ttcccagagt tacttctatc a
//
LOCUS       KCLJ01001802             484 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 201119cal ultra-conserved element locus
            uce-3504, sequence.
ACCESSION   KCLJ01001802
VERSION     KCLJ01001802.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 484)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 484)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..484
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="201119cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>484
                     /note="ultra-conserved element locus uce-3504"
BASE COUNT          183 a           76 c           72 g          153 t
ORIGIN      
        1 acaaccccac agtaagtgta tcttaataac acaataaagt gctagctctg attagaaaag
       61 aaagatgaat tcttctgcta aaccagggta accctaaaag cgtgttaaca tgaaatacta
      121 aataaaatgc tactcatcta taataaatct tattacacat tttggcaatt ttactactaa
      181 cataccgaag gtttcaagca atgtttgaaa atagaaatct taaattgaat cattgttgca
      241 tgaatatatg caaaatattc atttctagca ctgtgagggt tgagtgcttt taaattggag
      301 aaatcactca tgacttcacc ttttcatgca agataaagtt gtatgtggta acatcattac
      361 aatgtcatga aagaagtgga aatcatacaa cagttctgcc taaagctaat atacaaaaaa
      421 gtacttctat atttttcaat attgtccaat atttaaaggt gcagtacgag gctttaaata
      481 tatt
//
LOCUS       KCLJ01001803             415 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 201225cal ultra-conserved element locus
            uce-2243, sequence.
ACCESSION   KCLJ01001803
VERSION     KCLJ01001803.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 415)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 415)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..415
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="201225cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>415
                     /note="ultra-conserved element locus uce-2243"
BASE COUNT          127 a           84 c           78 g          126 t
ORIGIN      
        1 caaatactaa atcccagcat taattttaag attaaaaata gcctttctgc aacccgagca
       61 cctatgtaac gctgcttctg tcctttaaaa aacagtttta tgaaggagca gttgagccaa
      121 aattgaaaaa agggggcatg tagcctttca ggctacgatg attagtatta agatgagttg
      181 cactttagct aggctgaaac ttgttcgtaa cagaatgtta aatacttact gaaaagaaag
      241 attatgtcta tctagttaca ccattccttg atatatgcac catgtcagag tgccattgtc
      301 tcctgggtaa agactgagag ttcaaatacc cactatctct cccctggtgc tccaaatgct
      361 ctgctttgaa gtttttataa tccatctgtc atcttctagc agggagggca catgt
//
LOCUS       KCLJ01001804             600 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 201330cal ultra-conserved element locus
            uce-5445, sequence.
ACCESSION   KCLJ01001804
VERSION     KCLJ01001804.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 600)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 600)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..600
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="201330cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>600
                     /note="ultra-conserved element locus uce-5445"
BASE COUNT          219 a          109 c          104 g          168 t
ORIGIN      
        1 aaaacagggc ccaaaaatcc taattcaaag tgccagtaat tacagcactt agaattcacc
       61 ccgtatggaa tgtgattttt atcagtgtaa atgaaatagt ttaaatttaa aacaacaaag
      121 cagcttttag attactgttt cccttaactc accattaatg ctttggaact aattaagtgt
      181 agtgaagcaa gtgggtactt ttgtgctgat gaaagtacaa gagcttcaca gagagatgta
      241 atgcagccct tttatcaaaa gcagtcactc tatctcggcc tgacagttaa cagcatatga
      301 tctagtaaac aaatactttc acacagtaca aaagtgccat taaaggccag aactgtcaac
      361 acaaattcca ttcttgcaag agaaaaaaaa tatataaact gttgatcacc tctggttgcc
      421 ttaactagca tggaggttgt catggaaaca tttctgcgaa gttcacagtg atgaaacaca
      481 aacacttcca gtttaattgc tattaggttt agcataccag agtttattta tactcaaaga
      541 gcattatgat aaaatgcagt agaaagtaaa gctagcaatg atctggcata ataaagccaa
//
LOCUS       KCLJ01001805             730 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 201437cal ultra-conserved element locus
            uce-8009, sequence.
ACCESSION   KCLJ01001805
VERSION     KCLJ01001805.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 730)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 730)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..730
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="201437cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>730
                     /note="ultra-conserved element locus uce-8009"
BASE COUNT          215 a          162 c          147 g          206 t
ORIGIN      
        1 acatccacat gctcacatag cctgcattcc tcccccatta agctttgacc tgaactagac
       61 atcgagctaa atatgtgtgc acctgtcccc ttataatgac ctgctattat cattttccac
      121 ccctcttttt tgattgatgg atattatatg cagagtgacc ctcaggatct ttttgttagg
      181 ccttgctaaa gcaacctgca aattaattta atatcctctt ttggttggga gctatgaaac
      241 gagggctgga ggctgatgat gcgtaaacca tttgtggcat gtatttaatc tctggacaat
      301 ggatagagat gttagtgcat gctacactaa gttctattta cgctgcctat taagtgcagt
      361 caagctgaag gcaatcggag cacattacag ggcctaatgg gagaggatgc tacacaacag
      421 tacattaaag actgaaaatg aattaagaag gaagcatggt agagaaagca gacaaggaaa
      481 gggttctgta tacagataac tcttattgac agcacaaata ttcatgtact cccaaatcca
      541 attttggtat tggataccac tctagaggga atgttttgaa ttccattttc atgcagatac
      601 aaaatgactc gaagccagcc tgcctctccc acctccacct cagtggtttg cataacctga
      661 tgctgggaaa tgccttgcaa agctaagcca gatccctcct gaccacctaa atcaggctaa
      721 actttgtcag
//
LOCUS       KCLJ01001806             712 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 201551cal ultra-conserved element locus
            uce-390, sequence.
ACCESSION   KCLJ01001806
VERSION     KCLJ01001806.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 712)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 712)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..712
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="201551cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>712
                     /note="ultra-conserved element locus uce-390"
BASE COUNT          215 a          151 c          132 g          214 t
ORIGIN      
        1 aagtagaaag ctggagtaac caaggggtta aatataaagt ttacacttgg gaattctcaa
       61 taatatgctc ctccttccct agcagaaaaa tcatctgaca ggaaacataa gattaagttt
      121 gtcccaccta agtgaacaaa gagatctcag aacaggcaac cagttcactc cagagctaat
      181 tctgctggaa tccacagtgc tgctcagaaa ttattactga agttagcatc ttgcttctag
      241 atccacactg cagttcttgt tgcttctccc ataaagttta acttaaagct ccaaacataa
      301 tcatgtggaa aatggacatt attgattcct atggtccatt gttcccccat tctaagtccc
      361 tgaagttcaa gttcaatctg gaattacatc atgtctggtt tctcctggtt accagacggc
      421 ttgagacgtg accacagcta cagaaaaaac aaacagcctt cttcacgctt cggctcccct
      481 atcgattcaa acataaactt tttttctttc tctcaagtat gcctcaagta tggagcatgg
      541 ttaatttaga gattaagttc caaattagat tatctaatgg catcttaatg gattgctgac
      601 ccatttcctg tgggatggca gcatgcaagt ctggcttgaa tacaactaat ttcttaggaa
      661 gtgttgaaga tgcttgcctg gatggagagg aaacaatgtt ttgtacatca tt
//
LOCUS       KCLJ01001807             552 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 201661cal ultra-conserved element locus
            uce-3178, sequence.
ACCESSION   KCLJ01001807
VERSION     KCLJ01001807.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 552)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 552)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..552
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="201661cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>552
                     /note="ultra-conserved element locus uce-3178"
BASE COUNT          168 a          156 c           91 g          137 t
ORIGIN      
        1 atccacctat tgtcttctga tctctctgct aagatctctc cgtatgaata gaactgcttt
       61 taagagcacc acccctcccg cccccagcat ttcctgtcct ctcaccttaa aatgagaact
      121 tttcgaccaa agcagccatg tggagccaga attgtttcag atttatccag gcctttgctc
      181 acatcctgtc gggtgttaaa aatccctcag ctgctttgct aggaccaccc ggctagttct
      241 gaaccacatc tgacaaaatg atactgttca cttccagaac ccatcacaca gttattcttg
      301 gataaaaggt aaagcaaata gcagccaact gctcactgct gcagaaacga agaccatcta
      361 gccatttatc aaagcttcag acaaccagct tgctttgagc tcagccacct ctcccattac
      421 agctttaaac gataacacgc cataatatca gaaatgacaa atggaaccgg gggcccaacc
      481 tatacacaat caatacctgc tctgaaataa gaaccatctt taaagtattg acaaaggcag
      541 cagcaatacg ga
//
LOCUS       KCLJ01001808             526 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 201876cal ultra-conserved element locus
            uce-6769, sequence.
ACCESSION   KCLJ01001808
VERSION     KCLJ01001808.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 526)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 526)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..526
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="201876cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>526
                     /note="ultra-conserved element locus uce-6769"
BASE COUNT          158 a           96 c          100 g          172 t
ORIGIN      
        1 gaaaggagaa ttttgaattc tacgagttgg caaagttgtt gccactgcct gcagccatta
       61 ccagccagct tgacaaggca tccatcatcc gacttacaat tagctatctg aaaatgaggg
      121 acttcgctaa tcaaggtgat cctccgtgga acttgaggat ggaaggacct ccacctaata
      181 catcagttaa aggtatgtgt tgtgtgctat ggaatatggc agcctttagt agcctctaaa
      241 ttgaaatttt taccttcatc ctttcttctt tccctgcata tcaaatcctt taaagggatt
      301 caaatgtgga aatctgaggt ctgcatgaga aagacaccat gtgaaggtga aataaacctc
      361 ttattttaat taaacaacaa acctatgatg taagtcttct ggtaaattgt ttcaaattat
      421 ttacctgtta ctgtggtatt ttatataagt atatgtttga gaggtgattt gagaactcaa
      481 tctcttaatt ttctggctat accttaaagg atcacatatt tctgaa
//
LOCUS       KCLJ01001809             610 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 201985cal ultra-conserved element locus
            uce-2063, sequence.
ACCESSION   KCLJ01001809
VERSION     KCLJ01001809.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 610)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 610)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..610
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="201985cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>610
                     /note="ultra-conserved element locus uce-2063"
BASE COUNT          188 a          128 c          106 g          188 t
ORIGIN      
        1 aaaattagcc tttaatgcat ttattaattt caccaaacgt acttgaaatg ttgttttcca
       61 cagcagtatt cattattcct ttttgtgttt caggcttact cttatttatt ttttccattt
      121 tgtttttaca ccaaggagac tgcagtcaaa taacactcag caactcattt cctctctttg
      181 gactgaaaaa ttaaacagat actaaattat gacagtgaat ttagaaagga gggctccaag
      241 ggctcgaaag aacatgtctg agataatatg atgcttctaa gaatattgca atcacatcca
      301 agcaatcacc gaagcgtgcc atgtaactac ctcctcagct aatatgcttt tttctccgtg
      361 atgactaatc atgttctatt aaacagcagt aatgctggaa gaactcaact atacaagtgt
      421 aatgaagcca gtattctccc cggacagatt agctacaact gatttgacac ataccatcat
      481 aggagcttca aacctgacaa actctgtgct tgcttctgat ttatgccgtc aagctcttca
      541 ggagaagaga atggaaatcc aggcgccgca gaggtgaaat gttctgatgt gcttcactgt
      601 aaagtcaccg
//
LOCUS       KCLJ01001810             571 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 202095cal ultra-conserved element locus
            uce-4842, sequence.
ACCESSION   KCLJ01001810
VERSION     KCLJ01001810.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 571)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 571)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..571
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="202095cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>571
                     /note="ultra-conserved element locus uce-4842"
BASE COUNT          182 a          103 c          125 g          161 t
ORIGIN      
        1 gtgccaccag cacagcgcag cagctgattt agccacttga ccagagatgt aatcgggacc
       61 cagacaggga gggggaagag ctgaggaccc ttttgaggcc gccacctggg actggcagca
      121 cttctactaa tgcacagtga acagctaaat catacattat tgatttgtca gacgtatttg
      181 catataaata agcatgatca ttcatacaaa ccttaatgtt gttgttctcc ctttagtgtt
      241 gtgatcacag atgaatgact ctagttagac acaattcagg aaagcttgta ccactgcagc
      301 aaagtaagct gctgatttaa aactacattt attggagcat gtaagtgtga cagtctattg
      361 gtgaatttgg ggataattag tctaaaagac aagataaatg aatcctgaaa gtggtattgt
      421 gatgaagaaa tgatccctcc atgctagtaa agctttgatg ccagaaatat tgtaaatgat
      481 aattaactgg gaaacacaga ggaattatat ttcaattgtg ttttcaaaag gacttagaat
      541 tttacaggca aattgattcg gttctccccc t
//
LOCUS       KCLJ01001811             804 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 202206cal ultra-conserved element locus
            uce-759, sequence.
ACCESSION   KCLJ01001811
VERSION     KCLJ01001811.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 804)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 804)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..804
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="202206cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>804
                     /note="ultra-conserved element locus uce-759"
BASE COUNT          245 a          142 c          175 g          242 t
ORIGIN      
        1 agagagctcc acagtgtctt ggaaagttca ttgagattgc agctcgtaag aagcggaatt
       61 tcattttgga tcaggtagaa acttcagtga aaaacggttc tataggctgt taattaattg
      121 ggatgcagtt gtttcagtta cacttactac tcattcaggg gacactacaa atgcttgtct
      181 gaacttctct agatttatgg gatgttttta acacattaac tttgcattat gcagcatctt
      241 tatgtccagt tatttgtaaa cttcattgca agctcttgta gaggtgaagt ctatacacca
      301 taagttgact tccttaactc ttacaatgac agctacgtgt agtaagttac tgcatttttt
      361 tcagacaaat gtgtctgcag ctgcgcagag gagaaaaatg tgcctgtttg caggcttcca
      421 gcgcaaagca gttgttgttt gcccaaaaga tgaagactac aagcaaagaa cacaaaagaa
      481 ggcagaggtg gagggaaaag atcttccaga gcatgcagtt ctcaaaatga aaggcatgga
      541 acataatcct atactgtgtt ttaggatgct gagtatctgt ttaacggatt aagtaaacgt
      601 gaagtctaaa aaaccacttt atcttataca aaactggaag actattgtaa cttggtagga
      661 taacactata ttgtgttccc tctgctgcag tccttaacac tactcagtta cggtgatacg
      721 cttcatgcag atgcacaaag ctgtcttggc atatacgtga catatttggc agaaactggt
      781 gttctgagtg gaggcttata aaag
//
LOCUS       KCLJ01001812             767 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 202318cal ultra-conserved element locus
            uce-7727, sequence.
ACCESSION   KCLJ01001812
VERSION     KCLJ01001812.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 767)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 767)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..767
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="202318cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>767
                     /note="ultra-conserved element locus uce-7727"
BASE COUNT          233 a          145 c          173 g          216 t
ORIGIN      
        1 tttccttgct gttcttccat agaaagctga ttgtcaggag tggctgggtc tttgctatct
       61 ccaggagtgc ataagaaact tgcactatca gagaaccgta attgccatct cagacttcct
      121 gtttaggatt cagtcaagta gatattgttt atggatcata aaaccttact actgtgagga
      181 ttctcaaata cgagtttcaa ctttcatggt gctgtaaatt agaaaaaaag tgtgataata
      241 ctcctcggag aacagtaaaa tagagctctg caatggttaa atggaatttt ataagcacat
      301 tcagtgtgga actgttttgc attacatgag ttgaatacct tagagatgac acacatctgc
      361 aggcacttta ttaaatcctt agtcagcact tttcaacctg atgagattac ttcttcattt
      421 gactggagaa agggaagcaa agatctcgta ccggactgca gaattctttc tgatgtttca
      481 ccttgagcac tggagaagga cagcgagatg ctgggcagga caatacagac tcgtagttgc
      541 agcaacaact gtgtggcagc aattttactg agcaggacct ttagctccag ctctaaactt
      601 gctgggatgc aaagcaaata gaagggaaat aaaacaccgg ctcttttatg aaaaagcgtg
      661 gagataatcc tgaccgtact gtgatagggc ccatgattta aatggagatt ttaaattaag
      721 aaaggcaaca ccgccttctc cgagcgggtg cagtcggata ggttaca
//
LOCUS       KCLJ01001813             672 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 202429cal ultra-conserved element locus
            uce-7876, sequence.
ACCESSION   KCLJ01001813
VERSION     KCLJ01001813.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 672)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 672)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..672
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="202429cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>672
                     /note="ultra-conserved element locus uce-7876"
BASE COUNT          210 a          159 c          178 g          125 t
ORIGIN      
        1 aaaagaatct gcaagtactc tgcatcagtc aggatttagc ccatgctgca gatccaattt
       61 aggagaattg agaaagccct ggatcaccct ttgtttaaac actgttcaca atgttcaaaa
      121 acatccaata aatgaaactc aaaacaaaaa gccacgttga acaaaagcag aacagaaagc
      181 ccggcagcgg tgagaagcac atgccaagtg ctggctgatg cacacgatgg caaatgttaa
      241 gatggtgtga agcggattca tgcagttagc gcttgttcac ctgactgccc aacagaatca
      301 gcagtggaga gagcactagt ggacctggaa tgacgtcgag aagctgcaag tagaaggaat
      361 ggcaacaccc acaggattaa cacacattga acccgagaca gaaaatagtc caaaggggat
      421 gcgtgtgagc gccaccggca gaggtgtttc atagtgacag ggaatggcgc tgcgcgtgga
      481 tgtggaacag cgacagtgcg agccccacct ccgcctgcag ctctccccat ggccatagaa
      541 ctcatttgga acagtcccaa actgggtgca gctcagcaaa aatcacgttc cagacctgca
      601 ggtctggcag gcggccgtca cgagaacgtg gagcacggac tacagagaag ggtttagatg
      661 tgtctgatct aa
//
LOCUS       KCLJ01001814             240 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 202539cal ultra-conserved element locus
            uce-4398, sequence.
ACCESSION   KCLJ01001814
VERSION     KCLJ01001814.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 240)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 240)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..240
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="202539cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>240
                     /note="ultra-conserved element locus uce-4398"
BASE COUNT           85 a           47 c           54 g           54 t
ORIGIN      
        1 aaaaaaatag caacgtagag tctagacaga agagattggg ttgaaatctg gaagctattc
       61 agtgaggcta cggcacatgg cagcttgact gcagaaagag atcacattac gctgcctaat
      121 tacacatgaa aaatgtacac atcacttttc ttaaatgctt ggaaaaatag atgttcagat
      181 ggcaactgcg agccagtaac tgagccagtc gtacatactt ggaacgcctc acaaatggca
//
LOCUS       KCLJ01001815             718 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 202640cal ultra-conserved element locus
            uce-4680, sequence.
ACCESSION   KCLJ01001815
VERSION     KCLJ01001815.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 718)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 718)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..718
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="202640cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>718
                     /note="ultra-conserved element locus uce-4680"
BASE COUNT          211 a          152 c          157 g          198 t
ORIGIN      
        1 atcatcagcc taccgaaaat ggatagtcaa tataaaggca aatgtttgga tgttcaggtc
       61 cgtgatttta ttttgttgct atgcatttct gttcatttgc agctgatatt cgtacatttg
      121 taaggaaatg caggggaatc tctcaatttt gcataaaaag ataatagcaa cttgcttcct
      181 ctttcttccc attagagcat actactgaaa ttatttaaat tgactgagcc ttttaagcaa
      241 gtaaacacat tttaactagc ccaatccttc cattcatgcc tactatagaa attagccttc
      301 actcttcctt cacttacaca tggatacaca cacttgcatg gacacaagaa aaacttcttt
      361 tctcctgtca gcattcctac ccaacaatag ttagattagt ggaaatgagg gcctccgcag
      421 agaaaggaca ttcagccaca gaaggctccc tgcaggaaca gctggtaggg gttaatggct
      481 gctgaacctc acagccaggg cctattctct attgtgtgtt caactcctgg gaaggaggga
      541 gacttgtgac agcttctggg gtgcatggga tcagaggtac agcagctagg tcagagaggt
      601 agtgttcaaa aggctagccg ggaattgcaa taaaaatgaa ctctgcggcg gggacggccg
      661 agccttgaaa tctgcaaaaa ttgggcgcaa attgccacgt aaaggattat tcagtaac
//
LOCUS       KCLJ01001816             489 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 202749cal ultra-conserved element locus
            uce-4161, sequence.
ACCESSION   KCLJ01001816
VERSION     KCLJ01001816.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 489)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 489)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..489
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="202749cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>489
                     /note="ultra-conserved element locus uce-4161"
BASE COUNT          171 a           82 c           80 g          156 t
ORIGIN      
        1 tactgaacca ataaaattgt ctttttctgg ttattacagc actaaaatat tgctgaaata
       61 tgtacttaat tttatttaca gtgaaggaaa tcattcattt ggttgtgaaa gagttaataa
      121 ggaagaaaat cacacacagt gcgtgttaaa ggttagagga ataatcagtc atttgaaaaa
      181 cactacataa acatttttcc ggatgcaatt ttcagtccaa ggatacattt cccagtagaa
      241 atcagcagct aaaaaggaaa tcatttagtc tccataagtg ccaaattgta tcctgatttt
      301 tcctggtctg gctcaacttt caaaactagt ggttcaactt ctgcaatctt tcacccaatg
      361 actatataaa cacatcctta taagacagac ataatccttg ggtgggccaa tttatgttgg
      421 attatgaaaa tacttaaagt acagaatcgt ataatgactg ttgtcctttg gtttccacta
      481 aaaggaaaa
//
LOCUS       KCLJ01001817             712 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 202856cal ultra-conserved element locus
            uce-4766, sequence.
ACCESSION   KCLJ01001817
VERSION     KCLJ01001817.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 712)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 712)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..712
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="202856cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>712
                     /note="ultra-conserved element locus uce-4766"
BASE COUNT          198 a          150 c          120 g          244 t
ORIGIN      
        1 aaattgtcat tagtaaagga aggttttatt aattcacctt cttatataaa gaatcactaa
       61 tattcttata gatacagacc acgattattt ctgcttcctg ccttgcaaac atcttgtttc
      121 aaattaggtt tatctgctgt ctaaaactaa atacaatgaa tagatgtata ataaaatctt
      181 ttaattgtct tagcatatgt tgcttttatt aggtgagaat aattgcattc atgggatcac
      241 ctacaaagtc ctttagaata taaaattgaa atggcttcac actgagtgca caagtccttc
      301 tgagccgtgc cattttcccc ttcactgcct cttgtccccc tttcgctgta aagttcacat
      361 tgaagtgtga caagagacac ttgacaactg acacatgctg gatcttatca gcagtgagtg
      421 cagtcatggg ccctgactga agagcgattg tcatttctac accatttatt cctctcctag
      481 cctcattgct tgcttccttt ctgaggaaat ttttcctgtt aaagtactgt acttgtcgtt
      541 cttttttggt gcatgtctgt agggacgaaa ggattttgtt atgcattcat cccataggca
      601 agcctctaac agacttcctc taacctctta gtgtcaggac tgctctaagc tgattcaggc
      661 taataaaagc aacccaacaa agctttgatg gtgtcattac atcttcctta aa
//
LOCUS       KCLJ01001818             429 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 202968cal ultra-conserved element locus
            uce-1869, sequence.
ACCESSION   KCLJ01001818
VERSION     KCLJ01001818.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 429)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 429)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..429
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="202968cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>429
                     /note="ultra-conserved element locus uce-1869"
BASE COUNT          126 a           76 c           69 g          158 t
ORIGIN      
        1 tacttttctg tctgtaatct gcagttagat gattctagat ttcaggaaaa atgctgcaga
       61 aatctatttc ttatttaatt tctactgttc tttcgaacag cagtttgcag aatgcatctg
      121 ggtgtacagc taatgaccca tgagcaataa gcaactgttt aagtaaaatg cactaggaaa
      181 aagcttttac caaacagcat tttaatattt taaatagatt ttccattgca ggctcttagt
      241 aactggatta gttctctgat gtgttctgac agagctgttg ttagggatac tccattaact
      301 ttgtctgtca tcttattttc cccagtatcc ggcataacac ccttatattt cataatttgt
      361 attgctatca gtgctgattt gtaaatgtgc aaattataat taacaacggc cactacttct
      421 attaaatat
//
LOCUS       KCLJ01001819             390 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 203077cal ultra-conserved element locus
            uce-1451, sequence.
ACCESSION   KCLJ01001819
VERSION     KCLJ01001819.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 390)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 390)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..390
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="203077cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>390
                     /note="ultra-conserved element locus uce-1451"
BASE COUNT          141 a           72 c           71 g          106 t
ORIGIN      
        1 cctacccagg gatatacaag gtagaactgc ccaaagcagc ctgacttatg aggactgcca
       61 cagcaacaca accaatgcat ccctaaacat ttagtaataa aaaatctgtt gttctttagt
      121 cgccaggatt taacaagcct aatccctagg agaggtgata aaaattcatt aatctaatta
      181 aatacttctt attgccaaag tgactttgta gaggagcttt gctgaaggat aagtgcaaag
      241 taaaatggag tcccagcaga gaaacaaacg ttagacttca gcaagctggt acacgcttca
      301 ttaaactcat aattatcctt tggttctaag tagctgataa tatttaatga gtatccaaga
      361 taatttaaag aaaatgttta ctaatgagga
//
LOCUS       KCLJ01001820             579 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 203179cal ultra-conserved element locus
            uce-7700, sequence.
ACCESSION   KCLJ01001820
VERSION     KCLJ01001820.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 579)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 579)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..579
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="203179cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>579
                     /note="ultra-conserved element locus uce-7700"
BASE COUNT          158 a          126 c          125 g          170 t
ORIGIN      
        1 ccatcaggaa cctgcgcggg gatgaaagaa atgctgtttg ttgtttgtgg ccttattacc
       61 aatgtctggg tttaagaagc tcctgcttct cccacatcag cgctctagac aaatcttgaa
      121 ccacctttgt ggcaaggcct aacaaacgct gtcactttga cctaatccac ttttctgcac
      181 agctgtgcta aagtcacctt tagttttatc acattttaat gcaaacaagg ccggaagggt
      241 gcttgtttgg attgaagaag ctgtgacaat tcgtctgaat gggaacttca gtaactggga
      301 agaaaaatgt gacagggagc tttatcactg cattgtacac aacaatctga aaattattgc
      361 ttctttaggg gcctattctc ttcttgaggc ctagcacagt ctatgctaag cagccagaca
      421 gctctgaatg gtttgccagt cctaaagaca gattttaatt ctattgttag tgggtatccc
      481 tgactttcct aagaggattc aaagacaggc tgcagaacaa ggcagctgac ataagagttt
      541 ggccaatctt taaaattcaa atagctttcc ctggtcctc
//
LOCUS       KCLJ01001821             465 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 203285cal ultra-conserved element locus
            uce-7536, sequence.
ACCESSION   KCLJ01001821
VERSION     KCLJ01001821.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 465)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 465)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..465
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="203285cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>465
                     /note="ultra-conserved element locus uce-7536"
BASE COUNT          138 a          104 c          127 g           96 t
ORIGIN      
        1 cgatgtgagc tgagcccttg gcttggcaac agagccaggg gagggggggg aggaatcgcc
       61 tgcagcagtc ggcaggtcac acacacacag tgtgcaacag caaactcagt ttacaaagag
      121 acatctgttc cattacttcc atgcattgtg gctaattaca tcctggccca tctgtgaaat
      181 gacagccact tattctccag tgaaccataa aatctgtaca tgttcaatgt aggcagtgac
      241 gaggagtgca ggggagcagg gggaggatgg agaggggaga acaggagaac agggcgaagc
      301 accaagacat ctcccatttc tgactggtgt cagccaggaa agaaggaact ctggaagaaa
      361 ggccctaaca aaaaaacttg ctctaaccca aagacctttg catgtgtagg agaatgagat
      421 attacaagag gatttctaca gtgtttctgc ctcatctcta cctgc
//
LOCUS       KCLJ01001822             561 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 203392cal ultra-conserved element locus
            uce-4656, sequence.
ACCESSION   KCLJ01001822
VERSION     KCLJ01001822.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 561)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 561)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..561
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="203392cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>561
                     /note="ultra-conserved element locus uce-4656"
BASE COUNT          210 a           85 c          103 g          163 t
ORIGIN      
        1 attgtacatt agaaaatcaa tagtcccagt caaataaaac atttaaaaaa aggctaattg
       61 aatatggagg aagaagtgtt gtagttcttg ttctagtaaa caggcagtta aaactaggag
      121 gaaagtgtca attggtaaaa ttagctaaaa aagttacttt gagtttttgc cctacatttg
      181 gactatcaaa actgaggcaa acttttcaaa gcaaattgct gaggattgcc aagttaacaa
      241 gctgttctgt gctgcaaggg acatatttat ggacatactt tcaacaagac gtacctagtg
      301 ctaccaagct gtgctgtact aaagagcagt aagtatcaga taaactgatt tttaataaag
      361 gatttcacac atgagaatga ttaaacacag ctcaaatatt cagaagtgta caaacctttc
      421 cctcatcttt tctgctacaa tagtgtctaa acaaagtaga aaacccagga aattcaaaga
      481 taagatacat aagaatttta ttaaaagaag gcactgcaaa gttaattatg ggtgagttct
      541 aggtcttcag tagtaattct t
//
LOCUS       KCLJ01001823             698 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 203494cal ultra-conserved element locus
            uce-7304, sequence.
ACCESSION   KCLJ01001823
VERSION     KCLJ01001823.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 698)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 698)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..698
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="203494cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>698
                     /note="ultra-conserved element locus uce-7304"
BASE COUNT          209 a          137 c          154 g          198 t
ORIGIN      
        1 gaaaggcatt ttgcacacca aacgtcctgt agaaacaaaa tcaaaatatt tttccagtta
       61 tcttgtctac aaaaagcctt caatgactgt gaaggatggt tttaagcagg ttctaggcct
      121 tggggtattg gtatccaagt agttaaaact acatcagcac taatagctat gagctcatct
      181 tgtataagca catttttagt taaacaccgc aatcttggaa aaaaatgtta gtgtgcttaa
      241 acagcctggc tcagaatagc tcacaatatg acgcatacca caggaaataa agtggtatga
      301 ggcacctaca aaatattttt caaacaagtc attgaagctg taagccccat gcctcagctt
      361 taggaagtca cttattaaga atcaacacca gccgtgccaa gctaagctct tgctcttggt
      421 gattttccaa ttgaatattc agggccctgt ctcggtcttg ttttcaggga agtacatgcc
      481 tggaatgtta gcgagctatt tgctggaaaa aatgcccaca acaggcccaa tgttgatcac
      541 attaatgcat ttgagtgggt atagagtgca aatgattgaa agtgcttcca gatcttggtt
      601 gccggggaca aagcaggctc tgttctctga tctgatggtc atttttttca gcggaggatg
      661 tggtgcagga agagggagca gtgccaatct ctgtctaa
//
LOCUS       KCLJ01001824             510 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 203607cal ultra-conserved element locus
            uce-5148, sequence.
ACCESSION   KCLJ01001824
VERSION     KCLJ01001824.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 510)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 510)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..510
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="203607cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>510
                     /note="ultra-conserved element locus uce-5148"
BASE COUNT          149 a          117 c           99 g          145 t
ORIGIN      
        1 gccgggagcg gatgttgaca gccttgatgt cttggcaggc aggatccagc agcatctccc
       61 actgtatggc gctagatatt taataaagta aaacccccag gatcaagcag gctgcaatcc
      121 ctcccagctc ctttcttctg ccttgctcga gctctttcaa gcctgcctca gaaaatcctt
      181 tcatgcctcc ctcaccagac tgacattttg acaagttgcc acgagtgaca tctgatttgt
      241 acaaatttca agactaataa atctacctgt caaagcggaa actttaaaag gagctaagcc
      301 cagcgggtat agtttaacag aactcaagtt gatgaaactg taggatggag aaattatatc
      361 tgtcacaatc cacccacatt agttctgtgg agatgttggc aactgaaaca aacgtctttc
      421 acagccttgt aaaaggagac tgttaatact gtgagtaaca agtaacagtt ctatttgtaa
      481 actatttatt tatttcattt ttaatttgcc
//
LOCUS       KCLJ01001825             598 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 203717cal ultra-conserved element locus
            uce-884, sequence.
ACCESSION   KCLJ01001825
VERSION     KCLJ01001825.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 598)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 598)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..598
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="203717cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>598
                     /note="ultra-conserved element locus uce-884"
BASE COUNT          189 a          114 c          110 g          185 t
ORIGIN      
        1 cgaaaactgt tgcagaatct gaaatgcgca aaaggcgact tttcaagcac tctttcccag
       61 tcagtggcaa tacaggtaag ggtgggggat aaattttttc agataaaatt gggcttgctt
      121 gccttttggt tatgcacctt cttcctaaat acaaggattc ttctagtcag tcaaggggca
      181 actcacatgc caccatcttt tattcaaagg caggcacaga tgttccttct gcaggggagg
      241 ttttaattta tgaaaatgat attgtttatg catgaatgca ctctgcataa cacacagtac
      301 ttccatctga tgagagaaat accacagaac cagtgccaat gtcaggaaca tattctgcaa
      361 atttagtcgc ttaaatgttt aatgaatatt tggaaggcat ttccaaagca caagaaacct
      421 tttcaattac cttttcactg ttgataacaa aattcaactc ttccagccaa tgcaaagatc
      481 tatctaggct atctcagtat ttgctactgt gatacttcag agttttaatg ttatgagcaa
      541 tctaataagg aaaattaatt aggcattttg gtaactagag gctctaattt acaaatca
//
LOCUS       KCLJ01001826             576 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 203828cal ultra-conserved element locus
            uce-6988, sequence.
ACCESSION   KCLJ01001826
VERSION     KCLJ01001826.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 576)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 576)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..576
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="203828cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>576
                     /note="ultra-conserved element locus uce-6988"
BASE COUNT          177 a          113 c          113 g          173 t
ORIGIN      
        1 taggattaac ttggtaaaat atctcaaaac atgagcaata gaggccgagg cattttcagt
       61 tttttccaat ttatttagtt ttatttcttc ctctgaatgt atttttaata tacttatcag
      121 tgcaactctc aaagggtaag tgtgtattat agaaatggtc ccccagatta tattgtgaaa
      181 tgtatgtgaa tgtgcatgac ttgaaccaat gaaccgtggc ctggaatgat gtcacagaat
      241 gtgcagcatt aagtggaagg ttaaacctac ttgcatctcg gttcattaaa cgtggttaaa
      301 gtgcaaattc cctcattctg acagtagtaa tcacaagggt tcactttctg gtcacagcgc
      361 tgacttttaa accccacaga gcatctgcag aatttcagta aaatagacct acataaatat
      421 tctgccttgt gctggacaga acacaacgac ggcaagacgg cacacaccca cagaagacgc
      481 ccatctaacg aaagtttgct catgagtttt aaaataatgg gcctatgctg cctgaagtat
      541 tgttgtcaga tgtacatttc tatcgactga tccaga
//
LOCUS       KCLJ01001827             368 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 203937cal ultra-conserved element locus
            uce-3784, sequence.
ACCESSION   KCLJ01001827
VERSION     KCLJ01001827.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 368)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 368)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..368
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="203937cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>368
                     /note="ultra-conserved element locus uce-3784"
BASE COUNT           97 a           77 c           87 g          107 t
ORIGIN      
        1 tttaaatcat attttcttat tatttctcca tttctttgag tgcttagaaa atggaaatat
       61 tttctgaagt ctttcagggc aagggagaga tctaacagtg ttctgctact tctcttctgg
      121 atgtctcgct cccaggtgaa gtaggcaatg ctgccaagat gatgctgatt gtgaacatgg
      181 tccaaggcag cttcatggca acaatagcag aaggactgac tttggctcaa gtgactggcc
      241 agtcccagca gacccttctg gatatcctca atcagggaca acttgccagc atcttcctgg
      301 accagaagtg ccaaagtaaa gttctctttt tcagatagtg gcagaaggtc agcctgggat
      361 agtgggaa
//
LOCUS       KCLJ01001828             654 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 204041cal ultra-conserved element locus
            uce-5090, sequence.
ACCESSION   KCLJ01001828
VERSION     KCLJ01001828.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 654)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 654)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..654
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="204041cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>654
                     /note="ultra-conserved element locus uce-5090"
BASE COUNT          203 a          130 c          117 g          204 t
ORIGIN      
        1 tgtcaaactg atgacttcct tggcgtttcc ttgccacttt ctggttttag ggtgctacta
       61 gacagagcgc attcggacta cgatagtgca tttcatcacc tggatttgga aagcttttcc
      121 tcatcgcaac actcttcaat cagtcaattt gccaatacct cagaaacaaa tacctcggac
      181 aaatctttct caaaagacct cagtcagata ctagtcaata tcaaatcatg tagatggcgg
      241 cattttaggc ctcggacacc atccctacat gacagtgaca atgatgaact ctcctgtagg
      301 aaattataca ggggtttaaa tcgaacaggc acagcacaac ccgggaccca gacatgcagt
      361 acctctatac aaagtaaaag tagcagtggt tcagcacata ttggtatgtc tgttttaaca
      421 aacttgcttc tagaagtttt aaacttacgt cagaaaatcc agaatatcat taggtcatcc
      481 atatttattg tggtctattt tgatggttat cttcaagtgt gtttgctacg ttgaatttat
      541 ttgcacgcta acagtagtgt actgcatcgg tatgtaatta ttgtcgaaac ataaaaaggg
      601 tttaagttca cttttttaaa attaaaaata cattaattga aatgttaata taaa
//
LOCUS       KCLJ01001829             552 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 204151cal ultra-conserved element locus
            uce-1756, sequence.
ACCESSION   KCLJ01001829
VERSION     KCLJ01001829.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 552)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 552)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..552
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="204151cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>552
                     /note="ultra-conserved element locus uce-1756"
BASE COUNT          166 a          122 c          105 g          159 t
ORIGIN      
        1 cttgtgcact gatcgaacag ctctagaata cagcaatcct ttctacccaa gcctgcattc
       61 cagcacatac cagcaaagag aaaaatgaac tagataggat ttgcaagttc atgcacgcaa
      121 ctcggtattt tattctggga ctactgctgc tttaaggaaa gatggtctcc aaacggttta
      181 tgaagtgata gatcatatat aaataggttg tttgctctca gtacagatgc catcattact
      241 aactactttc aggctctttg agagctaaat aatttcgtaa tgcatcattg aacatttagt
      301 tgcttcgata gcagatggtt tcaggggtcc atctgctcac agcaatgttt tcaacaagcc
      361 cccttcacct tcaccaaaag gttcagaaac attagaatat tcattcctca ccacaggtgc
      421 ctttcccaga gcctccccat acacaggcat agtggtttgc tcacttggaa agacagaggt
      481 ggttactgaa atatgtgact taatctattg tgtgtagatt acttctgtca gcaaatggag
      541 acagcaacaa ta
//
LOCUS       KCLJ01001830             518 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 204260cal ultra-conserved element locus
            uce-1453, sequence.
ACCESSION   KCLJ01001830
VERSION     KCLJ01001830.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 518)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 518)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..518
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="204260cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>518
                     /note="ultra-conserved element locus uce-1453"
BASE COUNT          168 a          109 c           87 g          154 t
ORIGIN      
        1 ctcaaatagt gttagaattt gtaaataaat gctgttttca tacctagaag ccatgcttcc
       61 aaaattatga attgtttata aatcaagctc tatgacttgc acatttatgg taccatttct
      121 gtaaataatg aggcccatga cttgcacaca atacagctag aaaccacagc acagctcagt
      181 tttaaaatga ttaactgctg catacagcta tgactttatt tgtaaggagc agttaggaga
      241 ggcaaaatga gtatgcagct ttccattata tacaggcata ttttcaatag ccgtgtgagt
      301 ctttttatgg ctccatttat gtcaatgtcc tagtgtcatc tgtaataaac tggcagcaat
      361 tagagccaca ataaacccca taatgcaaca caaacaacag gaagtctccc agtaccccaa
      421 cgctctaaat ttacatctcc ccttcgaaag tctatttatc accagagttt gcaagcccgt
      481 ctgctaaaga gcgctctaat taagatgtat ctggtgaa
//
LOCUS       KCLJ01001831             789 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 204369cal ultra-conserved element locus
            uce-127, sequence.
ACCESSION   KCLJ01001831
VERSION     KCLJ01001831.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 789)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 789)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..789
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="204369cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>789
                     /note="ultra-conserved element locus uce-127"
BASE COUNT          230 a          155 c          133 g          271 t
ORIGIN      
        1 aattgtatct actaacaatg cttttatgtt tgctgcacgt aagctgaaag aaaacatgct
       61 gccagtctgt aatcctgttt agtatttgtg cagaaataaa ttagaaatgg tacctggaat
      121 attttccaca atacaaaagg caaatgtaag ttttaataag ttgaaaagga tacattctct
      181 tctcctgacc ttgatttttt agctatattc tctataccct tgctttagaa gtattattct
      241 tcatcccatc caattaccat ttctatcagc tcttctgaaa gattatgctt tttgggtgtt
      301 cttctgtaga tgtctttcca gtggcttcac ttgatgaatg tgacaagttt tgtgttttct
      361 ccctcccctc attgaattga aaagtttttt gataaataca ggccaataag tgcccaaagg
      421 cagtgtttca atggctgcta aatctttcaa ggttaggact taacctccgt tctccctaat
      481 tcaactgcaa ccttcagtct ggagccaatc aagaatatca gatgatactt aaacaatgaa
      541 ggatttctga tattcaggta cagcctctgt tcaataggat tgcaaattct ttgtgtgaag
      601 aaagtcggtt ttgctctaaa gtactgtcac aaaaagtgaa attaccattt gcttggaatg
      661 atgccattca tcattgtcag aatactaagc attgtaagta gctaggcctc tccaaattaa
      721 tgccttgttt tgcatcggct aaatttccca aatcctcgag gatgggtcat acaaaactca
      781 tctcaccat
//
LOCUS       KCLJ01001832             752 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 204482cal ultra-conserved element locus
            uce-1008, sequence.
ACCESSION   KCLJ01001832
VERSION     KCLJ01001832.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 752)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 752)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..752
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="204482cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>752
                     /note="ultra-conserved element locus uce-1008"
BASE COUNT          257 a          164 c          108 g          223 t
ORIGIN      
        1 tttcctcagt gcctgagcag ctattttgtt tcctcaggtg actgatgaga agtgaactgc
       61 atccctctaa cacaatgata tccatttcca ttaggcaaat aaacaactac aaatcattca
      121 gattatgtaa atgctcaatg atatttgcct cctggtatct cagagttagg actgtccaaa
      181 gttttataag catattttca actgagaacc tactacagca ctgatacatt tgtttttcag
      241 ttttttctaa tgacaaatca ccgtcttgga agcaaaaagg caaataactg attataagtg
      301 caatgaaagt ctcttgaatt tacatataca tttacttgta ccctgtcaca ttttcttaac
      361 ctctaaacct ccacacaaca tataaatgaa cttgtctgga attgtttttt tcccaaattg
      421 cagcctatat tttctgcagc actgatgcaa ttatgccacc tcaattgcct cgcagtggaa
      481 aaaagcacaa tgcaaaactt agtgtatcaa gaaaataaag cccagaaaat tgcctgtgac
      541 acacaccaac acaaagacac ctacgcttcc tcagaaagtg gacagaataa aagtagacag
      601 tttctattaa caataacaag acaaaataca gaggcccttt atctcttaaa atgtaaattt
      661 atacaaggat tcatgctgcc ctgctgtaaa tatcaaatac cccttaagac catagaacaa
      721 gaatgaattg attttcctcc tagtcttcgc ca
//
LOCUS       KCLJ01001833             329 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 204590cal ultra-conserved element locus
            uce-3515, sequence.
ACCESSION   KCLJ01001833
VERSION     KCLJ01001833.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 329)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 329)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..329
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="204590cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>329
                     /note="ultra-conserved element locus uce-3515"
BASE COUNT          106 a           75 c           58 g           90 t
ORIGIN      
        1 gcaattagaa agatctccca ccttgcagcc ctcacctcca gccaagccaa cacccacact
       61 tagcctgccc tttccaattt cagcatgttc agtgtaccaa taatgctctg atgcatttca
      121 ctcttgactg catacagtga gattgctaat caggattact tgattcagtc aacactgatt
      181 tcaataaaaa gacaaaaaaa ttatcataaa tatagagaaa gtgctggcgg cagtgacagg
      241 tgattaaaat ctcattcact tggaatcagc ctgattcatg gtagtggaat agaggaagtc
      301 ttcatatcag cagcagatga ttattatct
//
LOCUS       KCLJ01001834             666 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 204694cal ultra-conserved element locus
            uce-4648, sequence.
ACCESSION   KCLJ01001834
VERSION     KCLJ01001834.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 666)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 666)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..666
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="204694cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>666
                     /note="ultra-conserved element locus uce-4648"
BASE COUNT          192 a          128 c          161 g          185 t
ORIGIN      
        1 actgagctgc ctgagcagga gagggaattc accgtacaca gcaaactgtt atcccctaca
       61 atataatatc tggatttgaa gctgatattt aaagagggca cttgctttac ttatgagatt
      121 aaaggcaaat gctctcaaaa atgaagtcat gctgtgtttt gcaccttttg acacttatta
      181 actcaggtca ttaaaaagag gctaattaaa aaagaatgta aaacaaaaga gtcatttgtc
      241 tatcgccgag ctcggctctt catgtgcgct ggctggaggc actctgtgtt taaaccttgg
      301 gtacagaaag cactgggagc cactggggca tgcttggagc ttgtcatggc ttttggcgag
      361 cctgtggtcc ggctcattat gcacctcata aagaagagaa gtcattgtca tcaaaattag
      421 ctgaagctgg aatttacatt catggaaatt ttggttttgc cgggggctgg acgatgcttt
      481 taccagctgc agttaaagaa agtgaagttc aataaatgct tagtgcttcg ttaaggagtt
      541 tccaaatgca cgtgagattt tacagctgat gagaatttgg gataaacagc ctgtgaagtt
      601 cactggttct gggagatgcg ctcagcacat cccaacctgg cttgaaaaga caccggcctc
      661 ttagaa
//
LOCUS       KCLJ01001835             880 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 204805cal ultra-conserved element locus
            uce-327, sequence.
ACCESSION   KCLJ01001835
VERSION     KCLJ01001835.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 880)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 880)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..880
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="204805cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>880
                     /note="ultra-conserved element locus uce-327"
BASE COUNT          266 a          179 c          158 g          277 t
ORIGIN      
        1 taattagaat tatgccttct ttgtgccaag tgataattta ctgcaattaa ttatcaaaag
       61 atctactgct gtcaattacg gtacttgctc tttagaagct atttacgtat agctaaattc
      121 tgtaacaaag ttccatttta cttttattgt tttcaattaa actatcatca tttgccttcc
      181 ctctgccaaa tacaataaag actcgttaag aactaatcat gctactgtga cctttttttt
      241 aatccaaaca ttagctagac ctgcactgag tcaacactcc tattgttaca cctgcaaatt
      301 gtacgtagag aggagcatac ttcagaatta atgagcacag ctgtggtctc tcttacattc
      361 aacacttgta aaatagacct ctttaaagtg ccattatcac aatattgata gagttattta
      421 tagtactgca aacgttccca gtcataacag agtccttgtt atcccccaca gcagttcatg
      481 ttgttgccat ctcctggact cattccacag tttgtgataa ggcaccacgt ggacaatcct
      541 ttacgaaaaa agacattagg aaaacttcta cataggcaag ttttaaagct gggaataggt
      601 caagctgtca agacccagcc tgcacaagac ttgtcatgtt cttgtgctgt gcagtttcct
      661 gtaatttctg ggtgggatgt gaaatgaaat tacaggaagc acaagctgca aaggatctgg
      721 atggcattgt ccaaatgaga gctgcttttt gcagttagta agactgtttt accataattc
      781 agtaaaacag atgtaagttc aaactcttgg tgtcagtcgc tgaaaacaaa taccacaggt
      841 gccaactttg gttgctaagg gaatacaagc tccttgggct
//
LOCUS       KCLJ01001836             530 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 204916cal ultra-conserved element locus
            uce-6570, sequence.
ACCESSION   KCLJ01001836
VERSION     KCLJ01001836.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 530)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 530)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..530
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="204916cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>530
                     /note="ultra-conserved element locus uce-6570"
BASE COUNT          176 a           99 c           84 g          171 t
ORIGIN      
        1 atatgtaaca tatttcaagt ggatttactt atcaactttt tctagtggta ccaacagcag
       61 tagtgtgaaa tatatctact ccatttactc ttatccattg cacctacttt ctttttccct
      121 ttaattttta tatatggtaa aaatttcatt gaagagagat tttagatgac agggctgtaa
      181 ttttaaaacc aatagaagag gtgtaagcaa tttgagctta gctgaagcat aatcttaggt
      241 tgtcaagaag aaacccattc tccctatgct aatcaatcag tatatcaacc aaccaatcat
      301 ctcctcagct tagcatatat cctaaggttt gatatatcta ttaactgccc atcatgcagc
      361 tggtctccag ttgatgagat tccccctatc ttggcatttg gaggcagaca actgagctat
      421 cagagtctca gataaatact aaagtggaga tttcaatcct gttcctgata gcaaaagaca
      481 atccaggaat atagaatata tttttagaaa agaacacata gagaattaca
//
LOCUS       KCLJ01001837             841 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 205026cal ultra-conserved element locus
            uce-2456, sequence.
ACCESSION   KCLJ01001837
VERSION     KCLJ01001837.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 841)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 841)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..841
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="205026cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>841
                     /note="ultra-conserved element locus uce-2456"
BASE COUNT          288 a          156 c          181 g          216 t
ORIGIN      
        1 tgtaaatcca gagcctggat gttggagcca gaataaaagc aggacagtgc cctgcgtgtg
       61 cagatgaggc agaggatcca caaacacgcg ctcagcattt atttaatctg aatggatcct
      121 aagtgggggc tttgctggtt tattttttgg agagcacctc gctatttgga gcacatctga
      181 ccaaatgtaa tatgtctgtc taaaaccaca cactgtattt attttgaaaa cacttgtaaa
      241 agtttgcatt ttccagccac ccttgggata aaggtttgta aaaataaaga gcactttctt
      301 ccttcggatg aagaatcctt gaataagcag aaagaggcca agatgcaggt gatttattta
      361 agtctgtgtc aatgataatg atgtcatggt ttccagcaca ctgtgtccac cccattgtgg
      421 gacgaaagaa tgtcaaggac aattccaaac acaaaacttt gattgtgctg gaaccggaaa
      481 ggcacagtaa gaactccact gcactcttca gttcaaaacc tgcatcctgc agacaaacta
      541 cagaaagcat gggagaaaga gcaaaggaga gggggcttat ctcagagtaa agctatgtgc
      601 tgaggtactg gggtagacag tcaggcacca gggataaaac accactgaat aaaacagcac
      661 ccgaattaga attattgtct atattgtgtg ttttgaacaa taaataagaa aaatatttta
      721 tcagaagaaa aatgtgttat ctaagagtca ggataaacaa tgagtagctt tttaagacca
      781 atctcttttc attagacatc aaggcaccac atcagagcac ttttagaaca ataaaaaaaa
      841 a
//
LOCUS       KCLJ01001838             645 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 205138cal ultra-conserved element locus
            uce-4308, sequence.
ACCESSION   KCLJ01001838
VERSION     KCLJ01001838.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 645)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 645)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..645
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="205138cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>645
                     /note="ultra-conserved element locus uce-4308"
BASE COUNT          180 a          139 c          125 g          201 t
ORIGIN      
        1 atactatcaa gtgagaaagt agacttacat tgcaattatt ttcctattag ctgctgccca
       61 ttgctcctga caggtataaa ttagatctcg ccaggttgcc tacagattaa tgagttccca
      121 aactggcatt taattgtttg ggagtaagag gcagaaaagg aagcaaaaaa atctttatcc
      181 acctgtgatt agaagatatt ctcctttctt tctgcctttc ctttctcccc tggcatcgct
      241 tgggtgataa ctgacacttc tatcagagga ttcctttcga cgcagcagaa acttgcagct
      301 gaggcaaggc cagaattaat aatctgcgtg agcaaacaca cagctgctgt ttgtggagag
      361 agattctatt aacgaacagt gaattctcat aattagctga gcggtttctg cagctgcctg
      421 cctgacccca gactacacaa attgtgggtg gtgttcagcc tctaaatcaa tcttacctaa
      481 ttactataag catgttcctc cagtcctaat gactgggagg aatagacatt tccttaccca
      541 ttcaaatgtt cctcttatta gattctcctt tgtgcctttt tttctattag catttctaag
      601 ggtatacagg tgtggttaca aatcagaagc acagaagtat aattc
//
LOCUS       KCLJ01001839             720 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 205248cal ultra-conserved element locus
            uce-2014, sequence.
ACCESSION   KCLJ01001839
VERSION     KCLJ01001839.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 720)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 720)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..720
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="205248cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>720
                     /note="ultra-conserved element locus uce-2014"
BASE COUNT          234 a          120 c          107 g          259 t
ORIGIN      
        1 aagttggcta ctgaatttga attgcaaagt agcaatcaat tagtttatca ttaatcagat
       61 aattttgggg ttcgtgaata atgtgaaagg aaaagaagaa ataactacca ggataatttt
      121 caggaaccat ctctcagctt tataaactaa tcctcctcta atggcccttt ttaatgtaat
      181 ttataggttc atcattaccc tttttgtatt agtaattatt tctaaaatac caaagaacca
      241 tctttttttc aaggtccttc catgtgcctg atttacagct aggctcgtgt tggactctgt
      301 ctttctgaga tttgacattt caaaatattt atagctcttt tacattaatg cctttctcat
      361 gaatctgaag gtgaccgtta tttctttcat cttgttgtaa ttaaatggat caactatagc
      421 tttattattt ccactattta tctgtgcagt gtgttaacac attaagatta gcaagtgata
      481 ttgaacatta tgtgaattac aacaaacaaa tatttcctaa aacatgggtt aaacttgatg
      541 cattggctac gaaatcgttc caagtgaaag cacaaaatct ttaatatttt attgatcaga
      601 tctaaacctt ctgcccaaag tggcaattaa atttcaatta aactgactga aagcatcata
      661 ttaaatttca gcactttacg agctatcaga taatgctgca ggacaaatct ttagtatgat
//
LOCUS       KCLJ01001840             785 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 205360cal ultra-conserved element locus
            uce-7957, sequence.
ACCESSION   KCLJ01001840
VERSION     KCLJ01001840.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 785)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 785)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..785
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="205360cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>785
                     /note="ultra-conserved element locus uce-7957"
BASE COUNT          230 a          155 c          149 g          251 t
ORIGIN      
        1 gtactggaat gtcatatttg taatttttat ctttatttcc tctccgtggc gaatttctcc
       61 agtcatttca aagagtttgt tagccatttt ctcataaact ttggcattcc ttttagtttg
      121 tttcagctca tcaaaaaatt cttcccaaac cagcattaaa cctctcattt ctgcatcagt
      181 ccagttcctg gccctcctgt gtttctcagt ctgagaggag acaatgtaac tgggaatttc
      241 tgctgcagcc attgctgact gacctaaaag ggttttaaaa gaggacactt aatatagatt
      301 gagtttttag tttaggtttt ttgtagtgca agacatgcat atgtggataa agaatttgaa
      361 tgacaacaga acatatgaaa cctttttgca acagcttgaa gcttgagtgc acaaaatggg
      421 gcctacatct gacaggcagg aatttagtta aaagctttta aacagagaaa cgtcattttg
      481 atgtcacgtt tccatagcaa cagagcaact gcataagcta caacaacaaa aaccttttaa
      541 ctgaaagcca aagaatcagg acaaagttga caggccatca atattaaagc ttttaaacac
      601 tttaggttta acaagatcta tgcagccttt gagaagctac ttttaagttt ctacttcttt
      661 tttagctttc ccttaccttt taggcagaca atctgctagc agggggtcat ggtcgcctga
      721 acgagctttt aagttgtgcc ttgacagact ctctaggagg ttgcaaggac tgaggccatg
      781 tacac
//
LOCUS       KCLJ01001841             679 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 205471cal ultra-conserved element locus
            uce-7877, sequence.
ACCESSION   KCLJ01001841
VERSION     KCLJ01001841.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 679)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 679)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..679
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="205471cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>679
                     /note="ultra-conserved element locus uce-7877"
BASE COUNT          207 a          122 c          117 g          233 t
ORIGIN      
        1 aactcctatg aagtcgatgc aattaagtaa aatgagacta gaatctggcc taatgtttat
       61 ttcattttat cagactggat aatgctgtcc tggtggcatt aaatacagct gatctctccc
      121 ctccccttcc gtgcacacat gtttttttta aaatctaact atttacatct atgtctctta
      181 gtattgccta caaatcagtc aaagaagagt aggtcattta tcctgcccta ctgtttatat
      241 attaatcatc tggcaaataa actgctcagt atcctaccca cctcagtaat atttgtgatg
      301 taatttgttt ggatgcccaa atgtcaccag cgttgattgt aagagatgaa aaaaatgtac
      361 ttgctcagca caccaagctc tgggctaaaa tgtaagcatg aaatctctgg tttatttttg
      421 taataatgtt tacagctgtt taatgaccct gaaagggttc agtagtctgg tgttctgtat
      481 ttcttaacag gagtgtatta tgcttataac agctttagtt caactgtttc tgctgcaaca
      541 ataagaacaa tatttaataa aaattcaata tatattctga tctcagcaat acctgtttac
      601 gagttgctaa gaactgaagc agtctgtatt ggagtattta gaatttgcca gtggaccaca
      661 agataatgta gatatatgt
//
LOCUS       KCLJ01001842             716 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 205582cal ultra-conserved element locus
            uce-7623, sequence.
ACCESSION   KCLJ01001842
VERSION     KCLJ01001842.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 716)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 716)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..716
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="205582cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>716
                     /note="ultra-conserved element locus uce-7623"
BASE COUNT          247 a          137 c          158 g          174 t
ORIGIN      
        1 tcctgctgcc atcatgccaa gtgtctccca tttgatggca cttccagtcc tgagctgggt
       61 gtgtgcactt ttgcgaattc caaacccatg ttgcgttttg ctctatggga ccacgcttgt
      121 aagcacgtgg cttgtggcaa ccaaggtaca agcgaggttc aatcatgtcc tgtggtgtac
      181 ttacaatttg ggggacgcag tgtgttcagg atgaattgct gagaatatag cgaagcagaa
      241 aagcaatgtg agggaattag gccacagcac aaaaacacct aatattgatt ttagctacaa
      301 accgtagttt gattatggcc cataaggtag aagcaagact ccccgagctt gtcatttctc
      361 atacatgcag cgatattagg aggtatcatc gctgaggaag gaagagccca gcaccaagaa
      421 aagtaagaga aagagaaaga gaaaagtaga aaatttagat tccctataat aaagatgaaa
      481 gaaagaaaaa tcttcatatt ttatcttaga ataaagaaag tttatttttc cagtcagatt
      541 gtctaggctt cacccaaata taaggctgca aagacagcag ttgttattat tgtgacataa
      601 agagacatct aagaggtgat tcaataaccc agacaacgag agcatccatt ctaaaagaca
      661 gctggaacag cgacacagaa tgtcatagaa aaaacagtaa caatcaaaca acaacg
//
LOCUS       KCLJ01001843             601 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 205693cal ultra-conserved element locus
            uce-1965, sequence.
ACCESSION   KCLJ01001843
VERSION     KCLJ01001843.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 601)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 601)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..601
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="205693cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>601
                     /note="ultra-conserved element locus uce-1965"
BASE COUNT          190 a          137 c          110 g          164 t
ORIGIN      
        1 aactgggcgg cgatccaagt tcatctgggc cccggagaaa ggcaatgctt gtgtttagac
       61 cgcacaatac tgacataaca ttaacagatt tacatatgca aaactgtgaa gcaacaggca
      121 ttccccctca attgacccac agcttgtagt ggctgccgag ttattccctg cttaggctcc
      181 gtaaccaagt gggcgtcatg cgactaccat ctgggtacca cttatttaaa gctggcagtc
      241 tctctgtaat aggcaagctg gcaataagca ggaagggaat aaattgcatc atttagttaa
      301 catccacttg ctttgcggct gttaaaaacc catgactgaa taataatttg gttatttctt
      361 ttgccagaca atgctgtcag ccaaaagtac tacgcatgct gcaaaacgtc agcttgcaaa
      421 atttccactt taaaaataaa ttaaagaaat ttgcagtata atgcgagcta agaagttttt
      481 ctaatgctag caactcaaaa gcaatcgagc tctaaaaata aatatgcact actgtagtca
      541 ccagattctg cttctttgtt tttatcagcc acccatccat taaattacca aacatcacca
      601 a
//
LOCUS       KCLJ01001844             378 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 205806cal ultra-conserved element locus
            uce-6327, sequence.
ACCESSION   KCLJ01001844
VERSION     KCLJ01001844.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 378)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 378)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..378
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="205806cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>378
                     /note="ultra-conserved element locus uce-6327"
BASE COUNT          134 a           75 c           44 g          125 t
ORIGIN      
        1 ctagcgaatg acaaatatag ctaaatactt ccaaatgcac agtaaaaaaa tatcatgtcc
       61 gtatatctcc ctgacaggtc ttcatgcatt tcacatttca aaagcatgac agggatctta
      121 tttctaagat aaattcccct atctacttat ttcctcgtgt atttattgtg gatctaacct
      181 tctactacaa gaaataaata agcaggttaa gtagatgcta tcttttaaca aatagtttct
      241 tcagactgta ttacaacttt atgaatgtaa aataaatccc tcatttttaa atccaccaag
      301 acgtacgttt aacagcattg catctattga acctcaatgt gtactctatt attcacacac
      361 aataaaaatg ttaacata
//
LOCUS       KCLJ01001845             532 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 205909cal ultra-conserved element locus
            uce-698, sequence.
ACCESSION   KCLJ01001845
VERSION     KCLJ01001845.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 532)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 532)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..532
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="205909cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>532
                     /note="ultra-conserved element locus uce-698"
BASE COUNT          156 a           88 c          110 g          178 t
ORIGIN      
        1 aaaggcaaat gggactgggg ggatacagaa ggcgctgttt gaagcttgtc ggtctcagtc
       61 tggaagatgg tctgcaaaga agtcttttgg cagcacaaca gggggtttgt ggattttttt
      121 ttcccgtgag agatcttaac gaactgttat gatttttttc cgaaagggac cattgcaact
      181 ttttttggag ggagaaaact gatgtcttct atgcatccga ttcttaacaa agctgcaggg
      241 agcttgaaaa aatgcagact gtacaaacgc ttacaaataa ctgaactgac ttaagatcag
      301 agtttacttt tcagatcaaa ttgtttatgg ttttacaaat gtgatttcta cttgccaact
      361 tttttttttt tgtaacttgt tcccttatac ctccttgatt gaataccaga cagcctagac
      421 ctcagtacaa aaaggtattg aaacattttt gatacataac agacctcagt cttttttaaa
      481 aattaatata ttttcaggcg tatttttgta cagtgaaaag ggaacattct tg
//
LOCUS       KCLJ01001846             683 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 206016cal ultra-conserved element locus
            uce-6831, sequence.
ACCESSION   KCLJ01001846
VERSION     KCLJ01001846.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 683)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 683)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..683
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="206016cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>683
                     /note="ultra-conserved element locus uce-6831"
BASE COUNT          209 a          154 c          117 g          203 t
ORIGIN      
        1 tttactgggc tatccccttg cataaattta cggagtcatt cacggagcct cagcagaccc
       61 cactcctgct gaagaggtgc cgaagcactc ctcatggcca ctgcatcaac ctcgcaccat
      121 ggatcccagg gaaatccagc tccctgcggg gataattcag aatctctgtc ttcatgctgc
      181 acctagtgca cacaacatac accctgtgct cttaagcgcc cttcctgcct ttcctagtat
      241 tacagataat ttgctagttt cagagtgtac ttattacagg actgtcagag gagtttttgt
      301 ttcaacaaca cgttaacttt actgcactta taaaaaacat tatgtgtccc ctgtgattct
      361 gtgtgtttaa gagcagcgaa atgttattga tcccagtgtg acaaatcaag agttaggtaa
      421 tgtctacaaa actcaatttt ctgcaagaca taaaaccctt tttatgaaac ccttccttaa
      481 gaaattcagg aaaaatacac acaaaaaatg agagcagaaa ggtcagaaac tatttttttt
      541 taattaatgt aatccaattc tagcctaatg atgggcatat gaccaccgag gccaatttaa
      601 agcaatattt actcactact ttaaaacagt atgtgaaaac tcctgttttc tgaaatcact
      661 ttgatatgat taagaattgt att
//
LOCUS       KCLJ01001847             718 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 206128cal ultra-conserved element locus
            uce-6019, sequence.
ACCESSION   KCLJ01001847
VERSION     KCLJ01001847.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 718)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 718)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..718
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="206128cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>718
                     /note="ultra-conserved element locus uce-6019"
BASE COUNT          213 a          148 c          203 g          154 t
ORIGIN      
        1 gaagcaaagg ctgcaaatgc gtcagacatt ttgaaggggg aggcagaggg agtggaggag
       61 agcaggagaa agggagagct caacaccaca accaagaggg gcctgccagg gccacacagg
      121 cctcccagtg ccttaacccc tcaaaggaaa gaggggaccc cccttctttg tttttaatta
      181 cttcccattt taatcttgat ttgcatgtcg atctctcaga actgggccag ggactctaca
      241 aagccctcgt cagcaactcc cccaataata aacaggaaaa ggcttaaggg gcaaatcact
      301 tgcatgttaa tgagactgtt tgctggagtc aagagagaaa acagcaaaca aacaaatgga
      361 ctgaattcca gcggcagctg tttgctcctt aatctcggct tgtcagagct gccctttgat
      421 gggacacaat ctacacaaac gattgtgcta aatcttctaa tctacgtcct cattattaca
      481 tcccttctta cgcatgtaaa tcagggacaa actcatttta atatttagat agattatgga
      541 agggaagggg aggggattgg aggggaaagg agctgttggt ggtgtctgct cctgccggtt
      601 aggaggggtg ttaataagga gcacagggag gggaacaggg cagtagcgga gcacctgttg
      661 tcaaggcaaa atggggaaaa ggggcaagga ctgcagaaga tggcaagggg atgtgaca
//
LOCUS       KCLJ01001848             660 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 206238cal ultra-conserved element locus
            uce-3490, sequence.
ACCESSION   KCLJ01001848
VERSION     KCLJ01001848.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 660)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 660)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..660
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="206238cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>660
                     /note="ultra-conserved element locus uce-3490"
BASE COUNT          196 a          106 c          158 g          200 t
ORIGIN      
        1 ccttgcagga gggaagataa ggtttaatcc gtgttataag gaaaaatcct tgcccatgtt
       61 tttaggatct tctggaagtt tatttattca atcgaatctg aatgaaatgc agaagtaaga
      121 tggaaaactc acagaccatg cagccttttc atggttcgct ttcctccttt gctttttact
      181 tgagggcaga gctagggtag agaaataatt tttgttctct cctgaaaggt tacagtaata
      241 aagaaactct tgttaacatc agagtatatg gcaggcagga gttttcacag tctggcattg
      301 tttattttac cagcaatttg gaaccttctg cactcttaaa atattggcaa gaaaatattt
      361 aactgttaac tgttctgtgg cctgtgtgtg tttgaagccc tggggaggag gaatgcttgg
      421 ggaaatcggg tttttctcag cttatgattg aaaccagaag gtgcagaata ttggtagaag
      481 gtgaaagcaa tgtgacttca aattagaatt ttacccaaat gtggagctga tgggagaatg
      541 tcaaacaggt cacgtacgag cagggccctg ccaggctgat ggagcaaaca caaataggca
      601 tacagaaatg aatttgaaaa ggtgatagta attgtgagta ttttcattta tcctggcctc
//
LOCUS       KCLJ01001849             707 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 206453cal ultra-conserved element locus
            uce-149, sequence.
ACCESSION   KCLJ01001849
VERSION     KCLJ01001849.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 707)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 707)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..707
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="206453cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>707
                     /note="ultra-conserved element locus uce-149"
BASE COUNT          239 a          126 c          131 g          211 t
ORIGIN      
        1 atttgattaa gtttttaaat caatattata atcatttagt tcacaatcat gcacatttaa
       61 cagtcaattt aactcatctg gtatctcaca caaccaacac aatatgcaag aaacaactgc
      121 tgggaattgt ttcagatgct ctaaagtatg ttaatttcca aagcaaaatg acttgtgctg
      181 tgaattttaa cacacttgaa agcctgtact ttctctcgtt ctggagcaca aattttgcat
      241 gtctgaagag ctgtgattca tcttaagaaa acccatcttg tgttaaatgg aatggaaact
      301 ggactaagtg gtcaaatgac aagtacattc atattcaagc tgtattataa atgcatgtac
      361 agtaatttac gtctctcagc taccacaaaa ggctcttgat aagcaggtaa tttgctaaat
      421 ggactccttt atccaagtat tcgaagggcg ttacaagaaa aatctgcaga ggcattaatg
      481 tgacgtaaag gtcaagcatt gtgacatacc tttcaaataa tcccgcctaa cttgcgatat
      541 gatgaggagg ctgctggcag cactgttcag tgtgaagccc ttgatgtggg tctcagcact
      601 aaaagaagca gacatttaga aaggaattac tgacatgctt ctgatacgat aataaatggt
      661 tgagcaccaa ggtgaaatta taaaaactac tgttcgtatg ttaaaaa
//
LOCUS       KCLJ01001850             597 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 206563cal ultra-conserved element locus
            uce-5560, sequence.
ACCESSION   KCLJ01001850
VERSION     KCLJ01001850.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 597)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 597)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..597
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="206563cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>597
                     /note="ultra-conserved element locus uce-5560"
BASE COUNT          178 a          108 c          123 g          188 t
ORIGIN      
        1 ttttattaaa gctttagaca tttcctccat agccccttgg tggagacaaa ggtgttttaa
       61 aactgaaaat gttgtttgaa ttctggcctg cagatgagat aatggcggga agtggggaaa
      121 gagtgaaagc aaacatcagt tgtaaagctt tttaaaacat ggttgcttct agaattatac
      181 tcatagcatt aactactctg ctaaatgtaa tttcagagca gcttggctat gctgggacca
      241 ataatgtttc agcagatgtt aacagtgagg gaatttaaag attacagagt ttcatgggtg
      301 tagtaaagct gcagtgggaa cagaaatatt gcagtagctg ttatgttctg agtgcaccac
      361 atttactgac aagtaataca tgagtgatag tgaggaccat gggaacagaa ctttatactt
      421 actggtcagc agcctataaa ttccataaat taaacgaagt tttagtattt ttcatttctt
      481 ttcagaatga tcttctctaa gagcctctgg ttcatgttaa ttccatcgac aaagcgtgtc
      541 tcccagccac aagggtattt acatgcatgt tcctttttcc tcctcccact accctcc
//
LOCUS       KCLJ01001851             467 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 206674cal ultra-conserved element locus
            uce-4216, sequence.
ACCESSION   KCLJ01001851
VERSION     KCLJ01001851.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 467)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 467)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..467
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="206674cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>467
                     /note="ultra-conserved element locus uce-4216"
BASE COUNT          137 a           89 c           79 g          162 t
ORIGIN      
        1 ggcccaggga acacagatct tgattgttaa atccatccat actttcccta gggctataat
       61 atgccaaaaa cattaaatag cccacttaat acataacctc attctgtatg cttgactatt
      121 ttgtttttaa tttttcttcc ctttccaggc tgctcaaatg agatgggatc aaagaaaaaa
      181 attatcctca ctggattttg ttaaaatatt aataggttag ggttgactgg ctaaattgaa
      241 tatctatgct gatcttgctt gcatgtttaa cttgtgctta ggaaaatatg tttcctaggt
      301 gataaccttt tatgtaccag cctgacttca ttgaaatgca tagagataaa aatatgtcac
      361 actccatggc catgctattc ttgtgtggca gtgtgattat tcagatgata attgaccccc
      421 acctgtagac agctcaaatt ctgtagtcaa tcattccatt tgatgtt
//
LOCUS       KCLJ01001852             543 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 206780cal ultra-conserved element locus
            uce-4223, sequence.
ACCESSION   KCLJ01001852
VERSION     KCLJ01001852.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 543)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 543)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..543
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="206780cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>543
                     /note="ultra-conserved element locus uce-4223"
BASE COUNT          193 a           98 c           98 g          154 t
ORIGIN      
        1 ttttttaatg caactgttaa aataatcttg caagagtccc tgagtttaaa aagaagcaca
       61 aactatattt aacgtggtaa tataaataca taaagacttc aacatttgaa actggaggct
      121 aaagtatgta aagtgcttac ttagatgata tgaataggat actggcaaac aaaagcagca
      181 gtgtgctcct agaatgctgt gcttcaagga gtttccttgg caacagaaat gcagttccaa
      241 aagtagacag aactttcctc agaaaacata ctattaataa caaccttccg gaacaacttg
      301 gaacaatttg actacttggc aataaaatgc caagtgttct gcaaattaat ctaacacata
      361 agagttatat gtttctcttg cccataattc tcctgaactg ggggcctgag ttctctgctg
      421 ttagaggata caaatgtgca aagcggttcc aaatgctgca caaacagaga gacagctcaa
      481 atagcagcct ataaggatca attaatgttc ttcgtatcat tttaacttgt aaaccagatt
      541 agt
//
LOCUS       KCLJ01001853             416 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 206891cal ultra-conserved element locus
            uce-3138, sequence.
ACCESSION   KCLJ01001853
VERSION     KCLJ01001853.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 416)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 416)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..416
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="206891cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>416
                     /note="ultra-conserved element locus uce-3138"
BASE COUNT          109 a           86 c           66 g          155 t
ORIGIN      
        1 tttccttgac tcttggacca acccatatcc tgccttacct tttagctgtt tcacatggat
       61 tccattttta tgggactctt gatgcccact gatgttttat gcataatgat gctcaagttt
      121 aattgagctg taagcttcag cttaattatg agccttcgtg ataccttcag cactttttct
      181 tctctgatta ctgtaactgg ttctctccaa cccctttaaa atccttaatc tattaaacca
      241 cttgtagaca agtcattttt aggagaaagt ctaattactc tgttgcaatt atcttaatgc
      301 atcctcgata tttagagata ataacctgag tgaaatgcac tttgtggact attccagaca
      361 tttccattta atgatctgag tcacactgtg tgcttaaaat gaatttatgt ggagga
//
LOCUS       KCLJ01001854             672 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 206996cal ultra-conserved element locus
            uce-7859, sequence.
ACCESSION   KCLJ01001854
VERSION     KCLJ01001854.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 672)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 672)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..672
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="206996cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>672
                     /note="ultra-conserved element locus uce-7859"
BASE COUNT          222 a          114 c          116 g          220 t
ORIGIN      
        1 gaatactgta gtttgtttgt gggcatggaa gttaatttta atgccagttt ttatatctga
       61 gatactgtaa atgaatatct tcaacttata ttgcccatcg taaacttttt taacctgtga
      121 gtcattttca aaataataaa cgtaactatt ccataaaaat atctcaacac agaagagcca
      181 gaaaagtgaa ggacatgaac agatggcaca tcaatcttct gcatttatac aatttgtttt
      241 ttaatgcaaa tagtgtgggt tgcctgctct tgccttggat attgttccaa agacgagcac
      301 attttcttat ctttctggat caatgtgaca tttgcagtta tcataaagtg ggagcccatt
      361 taatgatgtt aatgcttcct taatgtaaaa ataaaatcac ctcctttata aaagcaaaca
      421 gattaaaagt cccaaagaga ccattgaaat ctgtgacatt tgcagttact ggtgcctaga
      481 tggcttgatt atacataggt tatcttaaaa acattgttta tgctcattaa tcagaacatt
      541 aaataggaat gctggagtct ccccagcagt tttaaagatg cattaataaa atggaggcag
      601 catttcatgc agcctgttta gatcattccc aaaaagtgca aacaatcaaa cttatggcct
      661 tatggcagct tg
//
LOCUS       KCLJ01001855             694 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 207108cal ultra-conserved element locus
            uce-7857, sequence.
ACCESSION   KCLJ01001855
VERSION     KCLJ01001855.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 694)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 694)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..694
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="207108cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>694
                     /note="ultra-conserved element locus uce-7857"
BASE COUNT          182 a          154 c          161 g          197 t
ORIGIN      
        1 agtaagcctc ttgctgtcat tttatataaa catgtcatga gaaatcctcg ctttaaaatc
       61 agtgtttgtc aggttcaact ccagccatgg cttccccgtg gaggttggtt cagattccag
      121 catcctccag ctgaaggagg cagttgccca gcgacaggga gttccagctg accagctgcg
      181 ggtgattttt gcagggaggg agctcagcaa tgacttgaca ctgcaggtaa gaatcccttg
      241 gtagtttctc gcctggactg ctgccagcta cactgcctct gcctctaatg ctgccaatct
      301 gatgttcatg cctgagatct aataaaataa atagtgcctg gggattcctt gaactttact
      361 ccacactgct tcattaattc tgaccttctt aattatgcat taaaacagca agcaggaagg
      421 gtagggagag aagagagaga gcctggtgaa taaatgttta ctgactacag aagcaagcca
      481 tgcacaattt ctgtatctgt tcaatttcta tcttacttat tccatttgaa tcttaatgaa
      541 gaaggatgtg aataaattgc tctaaatcag gctgcacagt catcacattt tataggattt
      601 gtaacccaat tgtgacccct ggacggctgc tgctgttgct gtgcctgcac aggtgtgtga
      661 tgctggggtg gttccagatc agaaagccca caaa
//
LOCUS       KCLJ01001856             475 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 207218cal ultra-conserved element locus
            uce-8026, sequence.
ACCESSION   KCLJ01001856
VERSION     KCLJ01001856.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 475)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 475)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..475
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="207218cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>475
                     /note="ultra-conserved element locus uce-8026"
BASE COUNT          161 a           59 c           91 g          164 t
ORIGIN      
        1 aagaaagaaa ctttcccagg ttgtaataaa atattaatat actaaatgtt ttctactggt
       61 cacatttagc taggcagaaa tttaaaaatt ctgctggcat gtttgtttgg aataaaaaag
      121 cctgtaggtc aagtctttct gagagaatgc caaatgtctt tgtgtccagt tatttatggt
      181 ttcagataat tgtacagaaa atatcaaatt tgcatagtgt gattattgct gattatttat
      241 ctagcagtca aaatgtttca gtggttccta ggatgacaga ttgacaagta cttaaaactc
      301 attcatttta tgaaatttgc atgtaattag gcaataatga aggggatgtt tgtggacagc
      361 ggattatact acaatatact ggaagtgatt caaatgcttg acaaagtgtt aacattatct
      421 tcagtttcaa ctaagtcttg aatatttggc tcaaaaatga aatgggttat ggaaa
//
LOCUS       KCLJ01001857             652 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 207325cal ultra-conserved element locus
            uce-4732, sequence.
ACCESSION   KCLJ01001857
VERSION     KCLJ01001857.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 652)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 652)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..652
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="207325cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>652
                     /note="ultra-conserved element locus uce-4732"
BASE COUNT          207 a          142 c          120 g          183 t
ORIGIN      
        1 ggccctgggt tccgcttcta ttcagggctg atttataacc caatggaaac ctgatgtaaa
       61 catatgatca atgagtccca tcattgctaa taataacccc caaccgacac actccctcat
      121 ctccaaagcc atccctttag gctattagtt ttgtccagct aatcctctcc acttgcctgc
      181 tgcttttacc ttggccatcc gttcagtccg gcagactcag aagtaatttt atacgcagca
      241 gagagcgggt ggaattgatt tttcgctcag tactcagttc ccatctgaat aattatcaat
      301 tttactgcct cataaaggga agagtcaaaa tttcaaatca attcaaaaga gcttctgaga
      361 ctatagaaac tgtgcatgag aataaaggtc aaagttgtca gtgacctcgg gagatgatgt
      421 cagatattag taccctgaat agttgacatc aaaggcactc aatatgatat gactagtgct
      481 aatgcaaatc atatttatgc tgactgctgg agaccagcca ttaatattta aaagagtatg
      541 tgaaagcctg cattcaaaat aaatataacg tattccgcag aatctgaagt taataaagac
      601 agatcgctgc ctagtcatac gctaagtgaa agattactgc atattaacag ac
//
LOCUS       KCLJ01001858             571 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 207435cal ultra-conserved element locus
            uce-819, sequence.
ACCESSION   KCLJ01001858
VERSION     KCLJ01001858.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 571)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 571)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..571
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="207435cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>571
                     /note="ultra-conserved element locus uce-819"
BASE COUNT          174 a          108 c          106 g          183 t
ORIGIN      
        1 tttttttttt atcaaacctc tccaaaggga ctcatcatat gcggggctct atgaagagaa
       61 aaagaagagc attgtcctta tcacctcctt ccagaaagtg gcagagtaat aggactttgt
      121 aaggcgaaat gaagcccagt ctgatggctg ctgattaaaa attgactctg ccacatcaaa
      181 gaagagttga aggtgaaaat gatgatcact tccctctccc agggaccctg caccatttct
      241 tttattcaac cttgaaaggt tctttctgaa taagataata tccctcgagt ccattctggc
      301 taggcggcat gggaaaatgt agatcagtat gcctattctc tatgaaaaaa tgggattttg
      361 ttaatgacat agcactctaa agtgatggct tgtatatggt aaatgctgag aaattaatta
      421 taaaatgcct cttagactat agatcaaatt aattgctagt atgcatctac taaaaagacc
      481 actgtaaact caaactgcat ttctcgccta ttgctggaga tttctttact tttctatcct
      541 gcatttttgg ttttgcttat tttatagcaa a
//
LOCUS       KCLJ01001859             581 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 207547cal ultra-conserved element locus
            uce-4, sequence.
ACCESSION   KCLJ01001859
VERSION     KCLJ01001859.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 581)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 581)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..581
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="207547cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>581
                     /note="ultra-conserved element locus uce-4"
BASE COUNT          196 a           99 c          107 g          179 t
ORIGIN      
        1 agattcttcc tccttcaggc agaggacagt ctcccactgt tcaaaggtat ctgttattac
       61 aacactagca agtgactaac gctaagtttc atttcttaca gattctttag aatgaaacta
      121 tatctaaaaa gtgcagatat gtttttattt cttttgcagt tcaggggagg gggagggaaa
      181 agcatcactg atttgtatat taaagtgcaa gcatctgtcc tactgatgac attctaggga
      241 agcacattag cataaaattt aacgatgtca aataagtgga tgtgaaatag ggactgcgta
      301 aagacactat ttccaagcct gacagaaaca tcactgttta gaaatgcaaa tgataccatt
      361 atgttcaata attatatgaa aatatgaaca gttcagcatg ttttccagcc ctgatggcgg
      421 ttaatgggat gtacgcttat gtaaataact actattaaag ctaatgctga aaaaaactaa
      481 taaattcata ctaaagcaac tgatttagta cgcttttaaa ccccagcagt gctcacttat
      541 tagaaaggag tgcattctta tgtttagaac tcattactgt t
//
LOCUS       KCLJ01001860             697 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 207658cal ultra-conserved element locus
            uce-3910, sequence.
ACCESSION   KCLJ01001860
VERSION     KCLJ01001860.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 697)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 697)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..697
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="207658cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>697
                     /note="ultra-conserved element locus uce-3910"
BASE COUNT          239 a          119 c          115 g          224 t
ORIGIN      
        1 atgttccttt ccaacaaccg ctacattgct gcattaaagt taaaattcca agcattcaag
       61 gatgtaaata tattaaacaa tgcatctatt tgtgcaaagc attctttatg agggacatcc
      121 atgtgctttt aatcagtttc atgctgaatg aaagaaaact gtaaactatg cattaaaaga
      181 aggtttggag aaagttatat cttctgcatc ctaattcaat gcttcccctt gctttcagtg
      241 ataatataag taatcttcta gcaacattca tgaggaaagt ttgatgtgga tttacactag
      301 tggagctaca ttacaatggg tagatttaag gtattataaa atgagttttt ggatttgtta
      361 cagaggtatg aaacccctaa gacacaggca gataggactt ccaacatatg gcaaccactc
      421 ttattataaa acaaaacagt gttaagtcaa agtacctgat tacaattcac tagtgctatg
      481 tagctctgat agcaggctta tatttaatgc catagaaaca atataattta tttttctgtc
      541 ttcccttatc ccttcattat tgggtttgta ggctttgaaa ccttaagcaa aaggacaaaa
      601 tataaattat agaaaacatc aaagtacagt gaaatcaaat gacattcctt acgatcctta
      661 cagagacagc taacacattt ctcatgtgca gtttggt
//
LOCUS       KCLJ01001861             335 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 207877cal ultra-conserved element locus
            uce-2889, sequence.
ACCESSION   KCLJ01001861
VERSION     KCLJ01001861.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 335)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 335)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..335
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="207877cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>335
                     /note="ultra-conserved element locus uce-2889"
BASE COUNT           89 a           80 c           56 g          110 t
ORIGIN      
        1 tttttttttt tttatttctt ccaggagtgc tgatgataag aaaagcaatg tctaaatctt
       61 cttaatggtg tttatgcaag cagttttgct tagctgcagt ccctgccacc ccctcccccg
      121 tccaccctcc cctcccatct ccctgctaat atcgctgctt cattcctttc cctgttggct
      181 attactatgg actacagcga atctaaaact aaataatccc cttagtgtca agttttctgg
      241 gctgagcaaa taaatctaac caaatgcatt atctaggtag aggaggctgt tgtaaagata
      301 aaggctattt tactttaagg caaagagtaa aacca
//
LOCUS       KCLJ01001862             767 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 207973cal ultra-conserved element locus
            uce-1253, sequence.
ACCESSION   KCLJ01001862
VERSION     KCLJ01001862.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 767)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 767)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..767
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="207973cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>767
                     /note="ultra-conserved element locus uce-1253"
BASE COUNT          215 a          156 c          147 g          249 t
ORIGIN      
        1 aagacagcaa aaataacact ggtgatctcc atgcaccgag gctttcaagt cttaagagga
       61 aggaatctcc ttttcactgt cccctcaaaa ctgttttgat tcatgcaaat gaatgttact
      121 gtttttaaat tgaccagtca tcatgtaagg tcctatcatt ctaaatattt gatgagaagc
      181 tgaggtctct ccaaggcacc tctaatcata aacttcctgc aggaaattta gaaaggatta
      241 tgtgtttcaa ggaggagccg gctgcttaaa gtaaattctc ttgttgagtc atttattccc
      301 ttaataggaa ttttctgatc tgctgtcatt cttgttcaca cactgggtgt cactgcctct
      361 aaaacacttg tcattcttta atggaaacaa aatagtcatt gcagtcagag ccgcaatgtc
      421 attccactac cccttgctgc gtcggcaata gtgaaaatga cagagcggct ctcagtaggg
      481 gtaattaaaa tgtaaatatt gatattttat tatttgaaat tactttccag tgcggcattt
      541 aatatctctc catctgtgcg gctctgttta gcggtcactt tagtgcagct ctgggatgcc
      601 aagcggcggc ttgatccccg ttatgtcaaa atgcttgttg ctgcttaatt ttgatatcta
      661 attaagtgga aaagtacagt ccacactgta atccatggca tcttaaccag ctgcttgggt
      721 atatttagaa ttaatctcca ctatggaatc atcctaatgt atgcaat
//
LOCUS       KCLJ01001863             451 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 208083cal ultra-conserved element locus
            uce-3101, sequence.
ACCESSION   KCLJ01001863
VERSION     KCLJ01001863.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 451)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 451)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..451
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="208083cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>451
                     /note="ultra-conserved element locus uce-3101"
BASE COUNT          154 a           86 c           83 g          128 t
ORIGIN      
        1 gctcatccca gaacacaaat gaaaaaaatg tggcatttct tagctgtaga aaatgcacca
       61 gggataacct cccctgtgct tgagtctata gaattagtat taatgccatg acaccacaca
      121 acaggcatat ggaagtgtta tttgtttctc atttaccaaa cagataagaa tatggaaata
      181 gtttcagtcc atttgtttga tgagcttcct aagccagtaa taaacaaatc aatacaatta
      241 gttttggctc atcatcatta gaaaccttca ctactgggat acaatttaat tatacctctt
      301 gttccacagc aaaaagcctt tgaaaatgga ctcctttgcc aacgatcgaa ccaggaggga
      361 ggagcaagag gatacatcag tgatggagga gttattatct aagcagggtg ttcaacatat
      421 aaagcatatt gtgcaatata atttccctga t
//
LOCUS       KCLJ01001864             673 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 208186cal ultra-conserved element locus
            uce-693, sequence.
ACCESSION   KCLJ01001864
VERSION     KCLJ01001864.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 673)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 673)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..673
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="208186cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>673
                     /note="ultra-conserved element locus uce-693"
BASE COUNT          207 a          122 c          116 g          228 t
ORIGIN      
        1 cacagtcaca catggcttta gtttactctg gaaaactgga acttgctacc actttttcct
       61 tgtcctgttc aggtagttca ttattttgtt gacagttcgg ttccattaat ctggtatttt
      121 tgggaaaatt gcttgcagac cttacatttc tctactaaag gtgatcaaat aggcattgaa
      181 tccctcatgt aaatgatgtc ttaaagttaa aataaaatct attttccaga aagtaactgt
      241 aaaactattt tatgcaagat ttcatgtggg ataccttaat ggttgaataa taaattttac
      301 ctcataaaaa tgaaattcaa taatacagta gctttctcag cgcagtagca tctggttgaa
      361 tctcatgaga gccaatattt tccaactcat taggatcatg tcgttctgta tgtcgtcaac
      421 attgacttag ccaagctacc tttacttaca taaccgccaa actattaaat aggtctcttg
      481 tggagtgaag tcaaatattc ctcttatttt gcttttgcct tggaagaaga aaagaaaatg
      541 tacatgctgt aacatttaaa catctggtct aaaccacatc agggtaacag tgaggaaagt
      601 aacaggattc agtattcttc ccaggtgtac atatattgtg gagctgctgc atagttcttt
      661 taaccactta gga
//
LOCUS       KCLJ01001865             539 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 208296cal ultra-conserved element locus
            uce-6955, sequence.
ACCESSION   KCLJ01001865
VERSION     KCLJ01001865.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 539)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 539)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..539
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="208296cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>539
                     /note="ultra-conserved element locus uce-6955"
BASE COUNT          181 a           81 c          102 g          175 t
ORIGIN      
        1 ttgcaaccaa agttcaaaag actcctgagg tgtgaacact gaaaatggaa atttggcaaa
       61 acgtgataat ctagtatttg tgttaatttt tcttgagcac cgatgaataa catgttcaag
      121 actcatgacc ttgctaaact ctttctattc tcttctaaaa gttggtcagg aaagggcttt
      181 gttatatcag tgggtttgtt ccatgccaca aatttcatgt acgaggtcac ttggaatata
      241 atgtgtagtg aaagaatctc attaggctaa aatgaatgta aaatgtgtca atttgatcca
      301 aatgagaact gtagtaaaac catgtttgat gttcatgtgc aataaatctt taacatttgt
      361 ctgtaaagta ttagagaacc cagagggaaa tctctatttg tgatagctgc acatttccaa
      421 tgatttttcc tataatcctt tgttgacatt tagcatatgg caacagaaaa gaagatccta
      481 aaatgagaat tattacttat tattcgaagg taaacaagat gggcaccttg aatataagg
//
LOCUS       KCLJ01001866             393 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 208407cal ultra-conserved element locus
            uce-7190, sequence.
ACCESSION   KCLJ01001866
VERSION     KCLJ01001866.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 393)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 393)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..393
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="208407cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>393
                     /note="ultra-conserved element locus uce-7190"
BASE COUNT          146 a           55 c           90 g          102 t
ORIGIN      
        1 agaaaatgaa ttttatgaaa ttgggaggaa gtttgcagca aacagtggat tatattggtg
       61 ttatatagct atctcatcaa aaggtagcaa atgcacagga ccttttgcgc ttttcaattt
      121 gaaagaaaat tatttcatta gaaaaaaaag aaccatcact ctggatgttg gagaatgcca
      181 gagcctgatg aaaccagctg aagagacaaa ctgagtgtac ggatgcagat tagccttcag
      241 aagatgaggg tgtaaaaggg atttaatggt aggatggatt atagaaatcc ttgtaacaat
      301 gttaaataat tatagttcca gccgagatca aagcagtgct gattgaaccc cctcaagctg
      361 ttaacacgga gtatcttgaa ggaaaaaaaa aag
//
LOCUS       KCLJ01001867             318 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 208510cal ultra-conserved element locus
            uce-4747, sequence.
ACCESSION   KCLJ01001867
VERSION     KCLJ01001867.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 318)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 318)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..318
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="208510cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>318
                     /note="ultra-conserved element locus uce-4747"
BASE COUNT           35 a           93 c          124 g           66 t
ORIGIN      
        1 aagggccggg ctgggttttg ctgccctcct ccccagtgcc ggcactcaga gccggtgccg
       61 tgagtcgtgg ctgtagccgc cgggggagcc gcgggcgcgg tggggtttgt acgagtcctg
      121 gtaggggtcg ggaactcctc ttccaccagg gggtaatgct ctcggctgtg ctgggaactg
      181 gaagacaggc ggttcctgct cttgcgagcc ctctcgttgt ggtagttctc gtcggagctc
      241 atgaggctgc gccgctcgag gggagagttc tcggcggagt gcgcgccgtg cctcccgcgc
      301 tggctctgcg gggccaga
//
LOCUS       KCLJ01001868             595 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 208603cal ultra-conserved element locus
            uce-7611, sequence.
ACCESSION   KCLJ01001868
VERSION     KCLJ01001868.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 595)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 595)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..595
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="208603cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>595
                     /note="ultra-conserved element locus uce-7611"
BASE COUNT          175 a          110 c          108 g          202 t
ORIGIN      
        1 ctctcttaca cttggataat ataagttgaa cactgtcagt ctgtctgagt agttttgagt
       61 tcaggagttc aaactgaaaa tgcttagaaa atggagtttt ttggctcatt aaaacccaaa
      121 acactttgga gcttggtagc tgctgaagga aaggctatga ggtgtctgct atataaggca
      181 tcatccagtg gctgccatgc taaataatgt gtttaaagca gaatttccat cagcagcaag
      241 cattatggtg ctaatttctt acatcattgt tcttttcatt aattaacatt tctcaaccgt
      301 tagtgcaatt attgcagtgc ctctgtactg tatgtctctt ttcatgatta ataaggagtc
      361 attatatttc cctttcctga agcagtcaat taacatggaa tactttccat taattactga
      421 atgtttaaaa ccagcatgct gtacctggag agcaatctgc tctaggaacc tgtgacacca
      481 attgctttta aaagttctct ttaaatttta ttccaaaaac acaagcaatt tagctggctg
      541 tattaatttg cctccgaagc agggctgtga atgagaaaca tcttttaatc tcatg
//
LOCUS       KCLJ01001869             554 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 208711cal ultra-conserved element locus
            uce-6200, sequence.
ACCESSION   KCLJ01001869
VERSION     KCLJ01001869.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 554)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 554)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..554
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="208711cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>554
                     /note="ultra-conserved element locus uce-6200"
BASE COUNT          151 a          110 c          117 g          176 t
ORIGIN      
        1 tgtttgtttt agagtaggtt ctttgcctct cggcacacca tatatgcact agcaagtgct
       61 cacagtttca gctgcattta aggaaatatt gttgtaaggc ttttatgtgc tgtacttcaa
      121 tcagctagtg ccagcagtat cccaatagaa agaccctcaa cagaccattt tcagcatttt
      181 gctgcaatta aactcctctg gttttagccc tcaggcaatt tagtaccttt ttacatatgc
      241 acattatgaa cttttgacca gggcctggta gtcatatatt agatagcagc ttttgaaagc
      301 agacttaaca agttcctcag agtattgcag ccagagtcag ttgtggaaaa ggtaatttaa
      361 ccaacttgca gtgaggccat tcagaatcgt actgatgatc ctaaatatgt ctttcccttg
      421 tttcctctgg aagctggtag caagagctct caaagaatgt gattgatctt ttattcagta
      481 gctaacgagg gctgtgattc tattagtgct ctacaaggca agggaacagt gatttaatga
      541 agtgtctggc gagc
//
LOCUS       KCLJ01001870             747 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 208823cal ultra-conserved element locus
            uce-3154, sequence.
ACCESSION   KCLJ01001870
VERSION     KCLJ01001870.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 747)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 747)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..747
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="208823cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>747
                     /note="ultra-conserved element locus uce-3154"
BASE COUNT          203 a          171 c          137 g          236 t
ORIGIN      
        1 aaaagataat attctattac tggtatgtgc aacttaaaag ggcactactg tctttggagg
       61 taacgagata ttcttttaaa tgaatgcatt atgcataact aatggatttt agtttgaata
      121 aattggcttc taatttggca agaccaaatc tagaattagt atctttttca tttctttata
      181 catagctttt aagagtgaaa gtgaaaagag taaatatgca ctaaataagg aacagcttgc
      241 tctggagtct gaattctcta gcctaatgtc gatccactga gttgccccat ttctctctgc
      301 tcagctggac cacgggttta ccatcaagag atcagggtct ttggactact accaacaacc
      361 aggaatgtat tggataaggt atgagatggt gcagcgccaa cagtcagtgt ttccatggca
      421 acgtgctggc agtctccatt aaccagttcc ttcagtggat aaacatgctt tttgatttgt
      481 tatccggtcc atatgctgct ttatcagttt cgttttaatc ttgattgaga tgccacaccc
      541 cctcattccc tttcttcacc catccctcac acccacattg ccagctttct cttcattgca
      601 catgctcagt atcaatctcc cctatagtta aaaggacagt gtatatagac agatatgctg
      661 aagtacgcac cctccccctt ccttctgctt gttaaggcat ctgcttcccc tgtgctcctg
      721 tttcaaaaca cacggagcag caacagg
//
LOCUS       KCLJ01001871             663 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 208933cal ultra-conserved element locus
            uce-3238, sequence.
ACCESSION   KCLJ01001871
VERSION     KCLJ01001871.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 663)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 663)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..663
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="208933cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>663
                     /note="ultra-conserved element locus uce-3238"
BASE COUNT          211 a          112 c          118 g          222 t
ORIGIN      
        1 gaaaattaaa tatactacta acttttcaca tatccaattt ggacactaag ctgaccattt
       61 ctggtgtatg catcagttca ttaatacagg aaaatatgct atcaaacaga cgatcaaatt
      121 tcatgtaaaa taagctccag cattaaaact gttcctggta ttttatgtgt aactctgtgg
      181 gtagatatat ttcttgctac cagagcaaaa ctgatttgtg tgatggttcc ccatcacgaa
      241 atcacttgga aggttgtgag ataaaatgtc gcttaggata atgtaattgg ccttaaggta
      301 caggagttga attattttca gtgatttata atctggaaat taaagactca ctcattttct
      361 aatttaattc catcttcaat ggaaaaatgt tcactctgaa ctaaattggc gagtaatgtt
      421 gctaattcaa atgcagatgc aatttcgatt ctggtagcag tttgctgtga ttgacgagtc
      481 cccaatggat cataatgatt cttatctccc aatctcacaa attctctagc agttgtgata
      541 ataacttcag ctaaggagaa aaggcaaaaa ataaattctc tgctgcactg tcaattcagg
      601 ctttgctttt ttcctgacat ggaatggggt ttatttcaaa tctattgcat gttggagaca
      661 aat
//
LOCUS       KCLJ01001872             718 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 209042cal ultra-conserved element locus
            uce-1983, sequence.
ACCESSION   KCLJ01001872
VERSION     KCLJ01001872.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 718)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 718)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..718
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="209042cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>718
                     /note="ultra-conserved element locus uce-1983"
BASE COUNT          191 a          136 c          159 g          232 t
ORIGIN      
        1 ttactgttgt tcagtgccga agagtgtcta ttgggagtga agtaacagat cttagtgatt
       61 tgtggttcct tctaatgttc gggttcagat gtgcaggtgt tgcttttgtc agatgaatgc
      121 tgcctgattt ctactgctat gtaattcacc tgcatcaaga ttaagaaacc actttttatt
      181 aaataagctt ggaaacaaga taaatgtatt ttgcttttct gtatgaatat ctgtttttct
      241 gatgagcatt taaaatgttt cctagtacaa ttgggaggaa tgcattatct cttatataaa
      301 agcagcacag tgctgaaata gtcctcctta attttggtca gaatgaacaa aagtgtctgt
      361 gtttattcct gcctaatgca tcacaaatct gctgacatgc taaccttgga gtcttggctg
      421 gcggtaatca ggcctgtgca ccggcaggaa agatgtacct aatgcactcc atcagtgcag
      481 tttgcatatg gaagttctca caggggagct gccctgtgcc agctgagggt tacctgccca
      541 ctgcagttat tgtatgtaat tatcgaacca atctgttcag cccagcaggg tttagatggt
      601 aatcatgaag caacactttg gaaaggaaag atgtaatgca ctctcccctt ctcccgtgag
      661 ctgtgtgaag ttgtagccac ttttaaagct gtattagtaa agctctagtt tcacacaa
//
LOCUS       KCLJ01001873             401 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 209150cal ultra-conserved element locus
            uce-2176, sequence.
ACCESSION   KCLJ01001873
VERSION     KCLJ01001873.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 401)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 401)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..401
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="209150cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>401
                     /note="ultra-conserved element locus uce-2176"
BASE COUNT          106 a           86 c           84 g          125 t
ORIGIN      
        1 agaaaatatg ggcagtataa cactctgctg tttggcaacc agaggggcct gtgtagtttc
       61 tacccttcag tgcatcagag taagattcca gcaaaaacac atgttaaaag ggagggctgg
      121 gtgttcagct gaatgaactt actgttacct tctagcataa gtcttctttt tcctgatact
      181 gtctgaattt gaaacatcta atttaataca ttgaagggcc ccgtcttcct tttatttcct
      241 gtctgtactg gagcagtcgc ctgtttcaat tatgactttc tccagctcct acatttttcg
      301 tgctccagct ggctcaaagt gcacttcctt ggaaggtaaa atgcactaac tgtgctgatc
      361 agagactgat agctggaaag ccacaatatt taatagctga g
//
LOCUS       KCLJ01001874             747 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 209261cal ultra-conserved element locus
            uce-1636, sequence.
ACCESSION   KCLJ01001874
VERSION     KCLJ01001874.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 747)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 747)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..747
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="209261cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>747
                     /note="ultra-conserved element locus uce-1636"
BASE COUNT          227 a          166 c          144 g          210 t
ORIGIN      
        1 aatgcaacca ctttcaccaa taaacactag atcatttaag ggaagtccct caagagttac
       61 tgcttcctga ttgatgtaat cttaaccacg gcctgtggtc caaaaattgc caatcaatca
      121 tgtatacgtt acaggaaaaa ttgggttaac gtgtctgcac gctggcgctt tggtaacgct
      181 ccactccatg ctggcacaag atcaccttta aagaaaatca ccctgttggt gtatcatgca
      241 tttgttttca cctcaccatt ttgttatgat gtataggcaa cgagcctcat gtggccttcc
      301 taatctgaaa acgagccaag agaaagaacg tgttccgaag tgttgaaaga aaggcctatt
      361 ctctgcctag ggaactgcag ctaatacagg aaatgaacac aagttttctg taagccgtcc
      421 agcttctgaa tcagctgttc cttgctgaaa accttcacct ccaaatctaa agactgaacg
      481 ccaaatatta aagttatgaa aaatgcgagt gttttcctcc tctttcctgt gttccttcaa
      541 agctgtgtaa atctaacttg aattgtaagc ggctttattt taacaagtgt gagttatcag
      601 agttcgcata tcaaattaaa cccaatgaat tctggacttg ttttaaattt caagccagag
      661 gccctaactc cctgcattgc acttggcagc cggccagact tagtaataaa gtgctaagca
      721 gaagacagga aatactagag aagtcga
//
LOCUS       KCLJ01001875             683 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 209373cal ultra-conserved element locus
            uce-1120, sequence.
ACCESSION   KCLJ01001875
VERSION     KCLJ01001875.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 683)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 683)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..683
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="209373cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>683
                     /note="ultra-conserved element locus uce-1120"
BASE COUNT          211 a          108 c          140 g          224 t
ORIGIN      
        1 tgggtgcata catgtctctt gacaaaagat ttttaggtac aactgatgaa attttatttt
       61 aaacatatta aatcattgaa tgcagttaag gagattaatt tcaactggtt tatcatttgc
      121 ttaaggcaac aagcaattat aaataatatg atgtgtagat aattgattgt cttaatttac
      181 tatatgcagt catataagat gctaattttt aatacttctt tagctataag aatgcatgtt
      241 tgctttctct tgattcacac agaacagatg gatgcttgac tgcctgctaa tccacagctg
      301 gaatggtttc agcggtttcc acgttgctgg gttagagtgg cttttctagt ggactgagag
      361 ggcagcaaga gagggatatc attattcatc agtatcccag tgggatcgct gccagcagag
      421 attaattttt tctgttatgc ttgtaaaaca agctcaggtg gagtctctaa tcctcagggc
      481 acgggtggca gatcaaggaa gatgctacaa agctagttaa ttttcagatt ctaggggaaa
      541 cagaagctct gttagatgta taaatacatg attgcaaatt taagtagctc aaatccaaat
      601 gggatcttcc tagacatctg gtcctgaaaa tctctgtttt caaaagaagt tcttaattta
      661 tgccagaggc aaaatatctt caa
//
LOCUS       KCLJ01001876             956 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 209482cal ultra-conserved element locus
            uce-1719, sequence.
ACCESSION   KCLJ01001876
VERSION     KCLJ01001876.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 956)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 956)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..956
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="209482cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>956
                     /note="ultra-conserved element locus uce-1719"
BASE COUNT          316 a          172 c          161 g          307 t
ORIGIN      
        1 gcacttaatt gaaagatatt ttaacctata tatttgccaa ccagaaaaaa aatgaaaagc
       61 cataaaacag taaaacttct ggcacagcaa tagcgtgtag ctacaataca ctttatggac
      121 acattaaaaa ttacaaaagc tgcagaaata tgtaatctgt gtggatgcaa actactatgt
      181 ttacaatgtt acggtaactt attctactag ctggcaataa taagcataac atgtttgtag
      241 gcatgcaatc atgaactgat aaaatagaat ttattattaa ctaaagaaaa gcatgtaaaa
      301 cctaggatga gcacttagcc acctcagctc atctgaatat attcaaggtt gggtgaaact
      361 cattattcag gactcgcagc cttgataact ttgattttca tccatccata gcatggccaa
      421 aaggtaccat ttaatgaagt accattcaga gagtaaatgg ggtcatataa tagacagtgc
      481 ggttgcacct tgtgttcatg tactgatagc tgttaagggt gcagtgatga accaacagag
      541 ctcatttctc cttggtaata aattcatgct attaatattt atcaaatgtg tgggccgtct
      601 caactgagcc actgcacatg agaccataaa tctctactat catatcaatt ttgaagcttc
      661 ttttgtacag tgtataaatt ttagtaatat tgaccactct tctttcaaac caatttgagg
      721 ccagcagtgt agctcactac ttcagatatc tctagttcca aagggaactt taaactgtgg
      781 tttcatttta aatcgctcat ctaagattct gtattaattg cccaccatca aacgcaatta
      841 gcaattcttt catgtgtggt ttatgtaatg taatacttca attacattat tcattcaggt
      901 tctgttttgg attataggct gaaaattctt tattagtgta gatgtaacca tgctgc
//
LOCUS       KCLJ01001877             763 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 209702cal ultra-conserved element locus
            uce-2338, sequence.
ACCESSION   KCLJ01001877
VERSION     KCLJ01001877.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 763)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 763)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..763
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="209702cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>763
                     /note="ultra-conserved element locus uce-2338"
BASE COUNT          227 a          130 c          155 g          251 t
ORIGIN      
        1 atgtgtactt aaaaacttca tcacccaaac ttggttcata attgtcaagg gccaacacaa
       61 aaaagaataa tgatttttaa ctactcaact gcgaggacaa aagtgctaaa atctgaagat
      121 taacaatcac atgtaggtac taacaggtat gttaactttc cagatgcatc cattcaaata
      181 attttgtaaa catttacctg tgtccaagcg ctttacaggg gactcatcat caacctcaga
      241 atctccacat gcactccttg atcttttcct tgggtgcaga agtgtctcca accttggaag
      301 gactacagac aaaaaggttt tggtccctag ctgtggagaa gttggctggg tttcagtgtt
      361 ctttgcagac ttttgggggc ttatactttt cgatttgcag aagagaatgg atgtacgtct
      421 gtttacatca gttgatgact cagctacagc agaaacagtc gactcattga gattactgtc
      481 aagtaagtgt tctggagtgt gtccatttat ttctttctga atggaagtgc tatataattc
      541 attatcaaat tttactcttt tgtaaagctt actctgctct ggattgagtt ctactggttt
      601 gagggttggt ggttctgaat tagtctccaa gtttgaagga agaggtaatg catctgatgg
      661 ttcaagttta gggggagatt tatctcctga aaaaattata aatagagtgt gatttttgaa
      721 aacctgtagt tataaagtct attataaaac tcactataaa tgt
//
LOCUS       KCLJ01001878             769 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 209813cal ultra-conserved element locus
            uce-5915, sequence.
ACCESSION   KCLJ01001878
VERSION     KCLJ01001878.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 769)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 769)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..769
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="209813cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>769
                     /note="ultra-conserved element locus uce-5915"
BASE COUNT          212 a          178 c          161 g          218 t
ORIGIN      
        1 tgtttctctc ccaccctgct tatgtgtcat tttcgttctt attttaacct ccaatgaaat
       61 aatcagatta cacaaagacc agtaacacct ccgtgtccct ctctggcagg agattgttaa
      121 aacattccct gaaagatctc ctgacgtgat gtcccctgac tgtccaaacg taacagcacg
      181 ccggcactgc atccctgtgc tggggaaaaa tacctcggtg ctcgcaggca ggaggctctg
      241 ggtgaccgtt gagtgcactc ggattttaca aactgtcata tggcgagata gtggtgggtt
      301 tcaatgccgg cacctattca gtcagcgcag atgaactaga atcaccattt cagttatatc
      361 atagctcggg gcgagaacat gtcaccctct ttatttccag ctcggaacaa gctgcttagg
      421 cagatgctaa ctgtggtcct ccctgccatg ttctgtagag tggcctttgt ctgggttaat
      481 tgagccccca ctccatttaa taggctgttg aagtcttatt gaaacagagc tagtgccgca
      541 ggttaaatac attgcagtgc tcttgttaat cccctcatta acggagctgt aaagcttgtt
      601 gagagctgtg agtttgcata tattatcaga gagttcttca ctcaagtgct atcaataaaa
      661 tgacaaagcc agtttgcaaa tagtgaaatc aacagtgaca caaagctaga taccttaaaa
      721 aaataaacaa gttaataact gataaatcta attttcacac ttcagggat
//
LOCUS       KCLJ01001879             770 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 209924cal ultra-conserved element locus
            uce-7246, sequence.
ACCESSION   KCLJ01001879
VERSION     KCLJ01001879.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 770)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 770)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..770
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="209924cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>770
                     /note="ultra-conserved element locus uce-7246"
BASE COUNT          221 a          153 c          172 g          224 t
ORIGIN      
        1 gagcaaaaga attatgtaga gatgtaatgc tgtgaacaga gttcttgtgc agatggtggc
       61 ttgctctttg catggctttc acctcctctt agagcagctc cagttaatgc tgatataaaa
      121 ctgcctgtta attggagtac atggagataa tggtaggtat aatctctaag taaactctta
      181 aaagctctgg aaaaagggta taaaacctga gtttgcactc tttgaagata gactcatcag
      241 tgtgcggagc agacttctgc cttgaggcca tttatagtgc cgaagcttgt gaagctaaaa
      301 cagtttgatg tgtaattgca ggaggaaatg gaaaacctgc tgagcatggc aggatatagt
      361 gccttatcac cctttatgtg catccagtgc ttgctgaaat tgccagcgga tccgcaacat
      421 cgacagaacg gtgacatttt tcatgggccg ccgtgttctg aatcaacact gcaacagcgc
      481 gattagagca ggtaaagtgc agggaacaat caaagagttg catgtgacag atcaggtttt
      541 agtcattccc tgctccttat tgcctgctgt cgtgtgtgat atgcaaaaca gcttctccag
      601 acgcattaca ccttcacatt acctgaaaat tgaattttat ttggtggcct gcatataatt
      661 tatagcactc ttccaatgca cttcagttct catttagcta aaagtgtgtt ctttatttcc
      721 tactggcagg gaaacagaaa taaaactgaa tattcagcac cacttacagt
//
LOCUS       KCLJ01001880             493 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 210034cal ultra-conserved element locus
            uce-5490, sequence.
ACCESSION   KCLJ01001880
VERSION     KCLJ01001880.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 493)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 493)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..493
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="210034cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>493
                     /note="ultra-conserved element locus uce-5490"
BASE COUNT          137 a          108 c          118 g          130 t
ORIGIN      
        1 ttctccttaa atgagagcat tgccaagatt tgcatacaaa cccacttgag tatttgtgct
       61 gcagcacatc tggcaattat caattgccac aggcttgcag ggagcgattc cagccttcta
      121 ccagctacct tgaacatact tcatgtttaa tttccctctg ttgccagagg cactgtgttg
      181 ttatgacagc tgatctgcca tggaatagct gtaaaggaaa atcaaccgct ccagcgattc
      241 tcagcgcaat ttatcggcgc tcgtgtctgg cggctgctgc cgcctgtcgg ggtaatgaca
      301 catgatgggt gattaaagtg caagtcccta aatcaaagct gtgccagcac tttgaagagg
      361 cagaaaacag cactggttgt gggaggacct cgttagtttt gttaacaaga gggagcaggg
      421 agatctccaa gattcacaaa taaacaatta gaatcatgga acagtttggg ttagaatgga
      481 ccttaaagat cat
//
LOCUS       KCLJ01001881             789 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 210125cal ultra-conserved element locus
            uce-818, sequence.
ACCESSION   KCLJ01001881
VERSION     KCLJ01001881.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 789)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 789)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..789
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="210125cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>789
                     /note="ultra-conserved element locus uce-818"
BASE COUNT          226 a          179 c          147 g          237 t
ORIGIN      
        1 aaaaatagaa atattattac tgctctataa gtatccattc tgtttcattt tctcagcaaa
       61 ataataaccc ttggacctcg taggcagcca aatatcaggc cttaaccatc tgtcaactgg
      121 cttagattca gcaagcatac tcccgtagtt ttagttctaa ttgtgtttaa tgctgcacta
      181 attatttcaa tggggaataa ttttgtacag tcaaagttga ctcattttat aaactggaag
      241 ctcttcagct ataaattggc aggtctcatc cttcatttct cctaagcgtt gtgccaaagg
      301 ggaataagta tatggttgct ctgtgaccaa atgtcatgtg ctgggcagaa acattgatcc
      361 tggctattaa tcactctgca agccctccca gtaatcaaag ggcacagctg caatgatata
      421 tgaccagtgt cagagcagaa agccctttac aagactgcat gcctaccagc tgatggccag
      481 tatgtagtac agcatgcaca ctagccagcc caaaatgccc aggccaatta atcatcaccc
      541 ctaactgttc atactatcat taaacacctt tattggctga attatctgag gattcttacc
      601 ccctaattac ttaggtctgg aagctaggaa ccttctcacc tggatacaaa aagctgccta
      661 ttacctgctc taggcccttt cattctctcc tcagtaagag tttgctgacc cagcagtgaa
      721 cctgtgacta ggagaaaatt ggatgctgtt gtgactgatc ttggtgtggt tcatatcaat
      781 ttgttgaaa
//
LOCUS       KCLJ01001882             791 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 210229cal ultra-conserved element locus
            uce-762, sequence.
ACCESSION   KCLJ01001882
VERSION     KCLJ01001882.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 791)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 791)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..791
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="210229cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>791
                     /note="ultra-conserved element locus uce-762"
BASE COUNT          241 a          160 c          127 g          263 t
ORIGIN      
        1 ggccacagct aaactacaaa cagtgttagt gctgtgtcta acttaataag ttatttgaaa
       61 tatcccatgc actgatgtcc aaacaaacaa acttccctcc ccctaagcaa actgtactcc
      121 tgagatggct ctcctaacat taagaatcgc tggtatttca caaataaagg agatcaccat
      181 gtgaaaaatt atcttttaaa atggagttta atttgcatat aaggaacagg agatttatga
      241 tgagcaacac agcgcagcac tgcatctgcc tagtatcagt cgtaatttag attgtttgtg
      301 accgatctta aattctaaag catggagaag atgaagtgct ctgttgctgt gttattgtca
      361 ggagtctaag acttaccaga gatttattag taatcttatc acaaacatgt ctcaagtttt
      421 tgcttttaat atgtgccaag ctcctctgag gaattttcct cactgcaatt atatttctca
      481 atgcatgcat tctgaagctt agttgatttc cttcccaaaa taaagcgacc tatcattaca
      541 ctacagtagc tctgctacat ttttcctctg ctacttaata atcaatgtat tcatcattaa
      601 aatctgagcc ctgaagcaat ggtttttagc atattctaat gactagcgac ttgcaaatta
      661 cattgacctt tcatgtacat tctgtaagca ccttgttcta atgtgtactg tatttatagt
      721 ttgccaatac aaactagcca aagattggat aattactgta atctattagc tcgattgctt
      781 tccctgctca t
//
LOCUS       KCLJ01001883             789 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 210339cal ultra-conserved element locus
            uce-5805, sequence.
ACCESSION   KCLJ01001883
VERSION     KCLJ01001883.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 789)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 789)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..789
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="210339cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>789
                     /note="ultra-conserved element locus uce-5805"
BASE COUNT          229 a          131 c          171 g          258 t
ORIGIN      
        1 caaactagta cttgccatat gttatgcaat actttggcac cagggataag ttaagggtag
       61 ctcttagcac tgaatgccct tggttttgct ggtttatgtc acaactttaa ccttgctttt
      121 ttttgggtgt taatttaatt tggctgctct gtatgtgaga catcttgcct gagtgaattt
      181 aattgcacca ttgagtaaaa ctaaagccat gaacactgat gcactacaat tctaccagag
      241 gtataaggtt tagttttata tggcttcttg tttggagtta ttaactatat ggaggaataa
      301 attttttaaa acattacaaa acccacaatg taaagttgcc atgagccagc caaaaataat
      361 acatatggca ttcaggagtg cagttgctaa ttggctgctg cctgagaaaa tggtacactt
      421 ggcttctact taacactgtg ggtttggcag aaagccagat ttggggtgag gttgtgaatg
      481 aagctgcatg tggttaggga ggagttcaaa tgattcatgt cttggaagtt gtagtaagca
      541 gtgcagtatg tacttgggta agcagctgga ggaaactcct cacccatgtc ctcccccaca
      601 aaccttttcc tacacctcca cttgtgtctc catagtccat atctcagata gtttttaaat
      661 agtttaataa gttgggctgt ttagagattt aattcatgtt tcaacatttc ttttctttta
      721 gacggagaat ggagaggaag tagaagtaga agaattctat gtaaagtaca aaaacttgta
      781 agtaaagtt
//
LOCUS       KCLJ01001884             763 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 210448cal ultra-conserved element locus
            uce-7354, sequence.
ACCESSION   KCLJ01001884
VERSION     KCLJ01001884.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 763)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 763)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..763
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="210448cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>763
                     /note="ultra-conserved element locus uce-7354"
BASE COUNT          175 a          166 c          202 g          220 t
ORIGIN      
        1 tttgtgtttg ggcatgtagc agacagtcta catctcctga gtaccaggaa ttcatctgtt
       61 ttccccctaa ttttgctggc actcgcagac aaggcatttg gggtatgtca gtaccagccc
      121 atctctagtt atcaacagaa ggttgtgagg caagatagct attcttatct gtccagcagc
      181 tgcttcaaag ctctttctat gttcattctg tgcccaactc tagtcactcc aaggtctatc
      241 agatcttcct tctgtagatt tggtaaatgt gtgccatcta tttcattgtc cataaatgtt
      301 tctttgtgtt cacctaagtt tagactttcc aaccaatctg ccacatctgg tttagtccac
      361 aggtggacag gcttagttgt aaaaggctta tttgagattg gctgttgtaa tatggaggga
      421 gaaggagacc tgctgcgccc tgtggtcaag ccaaataagt ccccagaagg gggctggctg
      481 ggtaggctaa atacatcgga cagagttgga gaaggagatg aggctgaagc agaagcagtc
      541 agaggagcag gcaggatgtc tttattaatc tctgttggtg aaaccacagg gctgggagcg
      601 tgccttgctc ctgaggtcct gctgtcatag tctggggacc tgctctgcag tgtgatcggc
      661 tggctggctc cgggtcggac agtgaaagtg attgttgtac ttcgtgtacc tgagacagta
      721 ctcatgactt ccgtgctcct gcaagggcac aggcacagtt aga
//
LOCUS       KCLJ01001885             738 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 210560cal ultra-conserved element locus
            uce-3890, sequence.
ACCESSION   KCLJ01001885
VERSION     KCLJ01001885.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 738)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 738)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..738
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="210560cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>738
                     /note="ultra-conserved element locus uce-3890"
BASE COUNT          219 a          127 c          163 g          229 t
ORIGIN      
        1 ggcattcata gcctgaagta aattaatatt tgggcttaaa aactgttccc tgagcagaac
       61 aatatttgca gttttcatac aaatcagctt tttaacttaa tttcccttta cagaatttca
      121 gcatattgtg tactaaattt cttaaatgtt ctgtgtttta ttggtgagta atggttaaag
      181 aaaatatcag actttgtgat aaccaaggat gtgctcaagt ggcatgaata cttcagttcc
      241 agatgggtca gctttagggg tcaagttgtg aagagaaagc catcacacac acttcatcaa
      301 caccgtggaa tgagagacca gtgcatttac tgagcaatgg atttccagtg agcgtataaa
      361 ctaattggtg gatgaacatg ccccaggagc aatgatttta aggtcatagc aggctcagtg
      421 aattgtgctg acttacactg tgtctcagtg atagctgatc ttaccaatga gcagtttaga
      481 ggcattcaag cctgaactct tttccatgtg ccttgaatgg catgtcagcg gtcactgttt
      541 ctgacatcct ttatatttgt ccagtcagct ctaaatcttt aggttgggct tcagcgtact
      601 caggaaagaa aggagagaag tgattatttt cagtcattga gttctgaaga tcttagtgtt
      661 aattatgcca aacacggttc gttcatcaac aaactagaaa tggtaaagag agacgagaga
      721 gggaactggt atttttgg
//
LOCUS       KCLJ01001886             777 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 210669cal ultra-conserved element locus
            uce-624, sequence.
ACCESSION   KCLJ01001886
VERSION     KCLJ01001886.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 777)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 777)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..777
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="210669cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>777
                     /note="ultra-conserved element locus uce-624"
BASE COUNT          228 a          165 c          156 g          228 t
ORIGIN      
        1 gcctatatag gtcaaggctg ctaggcttca ctgctttgtg tattatggtt taaagaacgc
       61 tctaaattca aggtttttaa tctatgggga aaacttccta taaactcaga ttaacgactg
      121 ctaatgcact gaagaaagaa aaaccttcct cctactataa aaacaaaata gtgtggcctc
      181 tgtttctttt ctgataagag tcttaaatac caaacattta actgcataat aacattccct
      241 ggcagccagc agcctgctta gcagatacat aaagcaggta aaaggggaaa aagttaattt
      301 cttggctgaa tgattccatc ggtagctata gggcaaacta gaaagtcttt tagtaaagta
      361 gcagttgatt cttctatcaa tctgcagcac acacactctt ccaaggaatg cattaaatat
      421 gaaaatcata tcccgttatc atctgttccc agctttcagc ccagttttcc ttaatgaatg
      481 ctgtagccta agggacgcgc gtgctgccgg ctcctcggaa taatggagtg atgctcccgt
      541 cctgcctatt ccggcgccgc ctggctgagg ggcttccaca cacagtcaca agtgactact
      601 cttgccagca tgctccaagt tattacaaga tgtttttaga catttcatct aaaagagctt
      661 tgctgctttt agtaaaacag ctctggtctt gaactgtatc atttatatgg agataggagg
      721 agggattagg agcctgcatt actgcagata tatggcagca gatatttaag tattcct
//
LOCUS       KCLJ01001887             584 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 210780cal ultra-conserved element locus
            uce-3692, sequence.
ACCESSION   KCLJ01001887
VERSION     KCLJ01001887.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 584)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 584)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..584
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="210780cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>584
                     /note="ultra-conserved element locus uce-3692"
BASE COUNT          190 a          115 c           81 g          198 t
ORIGIN      
        1 aaaaacatgg tatactctac attcatttat taaatacctt atgtttccaa acaaagattt
       61 ccatatttgc tgcaaaactc tgtagcttca tgctttacac tactgagcaa agatgacagc
      121 actgaaatga gctattacta tttccatcag gaagatatgg ggaactagtc tgtgtctttg
      181 aggtatatat attcatccaa tggaaaagct ttaaaaagca gcactatcta agatatcagc
      241 atcccgtctc ccttggagac agctaaaccc cgtatttatc taaattatct tggtaatatg
      301 acagagtgat tgctcactaa tggtcagtaa cagttttctt tgtcattttc ctagtcatta
      361 cctcctcaga atgaactcca gaataaactg ctgatgcatc gtgactagaa tataaagctt
      421 atcatcacaa cagaaaccat ttctattaaa ctcacaaacc tgtacattgg acttctgaca
      481 ttttcattta ctctattaca aactctagag atagatatct tattcttaaa acagaagtaa
      541 agtaatattt attttgaaca gctgtcttct gttttctttc tttt
//
LOCUS       KCLJ01001888             767 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 210889cal ultra-conserved element locus
            uce-1170, sequence.
ACCESSION   KCLJ01001888
VERSION     KCLJ01001888.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 767)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 767)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..767
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="210889cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>767
                     /note="ultra-conserved element locus uce-1170"
BASE COUNT          226 a          144 c          155 g          242 t
ORIGIN      
        1 ttatactgtt ccaagtaata aatttagctt ctggcaactt aatttgtaga taactctggt
       61 cgttcgaaga taggattttt acattaaact tggaatccgc atgactgttt aacatcatta
      121 ggagaatatt atattgactg caagtaactg gtttccatgt ggttatatca atctatttct
      181 gtaagactgt acactagttg ttcccctaga gtactccttg taatgctgag aaagtgtcag
      241 aaataatgac tgtctaccta tatctgcaat aaaacgtaga gcatggatat tatagttgta
      301 agtatcaaag atttatttca tgactgcagg taatgatgaa tcttttagca caactaatgt
      361 ctagaggaaa cctctcttct tctctgagct gtcacatgga gactatttat agggccctta
      421 gtgctgtggg gctttagcat aaagaggcaa tgtgtctgag gtgccaccgg atggaaatgt
      481 tagcaagggc tccctctcat tgaagatctt ttagtagata gcattagatt ccctctttgt
      541 gtgtttacgt ccccccaaag acaggggaca gatgtttaac atcagaccat taatccctta
      601 gcccaggttc ctgtgacagc gaaaacccaa cagaatgagc cctttgcctt tgctcagtgt
      661 aaatgctgca atttactgct gatttacaga gtagggtcag gccattagaa acttggcaat
      721 cttctgtaca gctggaaaac aatatgcatg ataagctaaa attcaat
//
LOCUS       KCLJ01001889             648 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 211000cal ultra-conserved element locus
            uce-3310, sequence.
ACCESSION   KCLJ01001889
VERSION     KCLJ01001889.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 648)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 648)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..648
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="211000cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>648
                     /note="ultra-conserved element locus uce-3310"
BASE COUNT          210 a          117 c          134 g          187 t
ORIGIN      
        1 tttggaaaga acaaagttct cattatactg actgttgaga ttctcctttg tgaaactgtg
       61 acaaatctaa tagtgttttt taatagagtc aacaggcaga tggatgagat tttagacagg
      121 cagagacaga agtgtataaa cttcagccaa acacaaagaa agagaaactg cctgggaaaa
      181 tgtatctgag agtagctcag catggcttgg tgttgggagc tgaacttgca gctttgacaa
      241 ggctgacttt aaggcgacct tcagtgaagc tctttaacag tgtaagctgg gcaatcgctg
      301 gtaaatcttt attaatttta attggcggca cccatttata agaaccatta aaaaggataa
      361 attgagccca tccggcgtaa tgtcttttgt taattagttt gtcagcactg ttttaatatc
      421 ccctaatgac ttcatatttc aggcctgaca ttaaaggaga cactgtgaga aaggaaatgg
      481 tcttatcacc gtgtacattt ttttgaacaa aaagtgtcct tccaggcctg accaaggtta
      541 ggtgtcattt aactcagata gacaggtatc accctatcca aaccttacct tggtactgaa
      601 caacattttt acagacacac aacagcagaa gaaattaaaa gtcattag
//
LOCUS       KCLJ01001890             582 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 211109cal ultra-conserved element locus
            uce-5866, sequence.
ACCESSION   KCLJ01001890
VERSION     KCLJ01001890.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 582)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 582)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..582
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="211109cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>582
                     /note="ultra-conserved element locus uce-5866"
BASE COUNT          185 a           90 c          101 g          206 t
ORIGIN      
        1 ttctacataa tactgctaaa tattctcagc aattcaaatc aatataattt aagttagcat
       61 ataatataaa ctcaaatatg tattcctttt aaatcctgct ttcagcatga agacagattg
      121 ttggtgtagt aaattaaagc tgccttactg cagctatttt gtccaatgtt ctatcacaga
      181 cctatattaa tattttatcc cctttaatat cattacatga tgcaggctta atttaaatag
      241 atttgacggg cctcttggtt ggcttgacaa ccagagggaa aaattaatgt tctgcattta
      301 atctcagctc aaggcgctaa attattttgg aggtcgaagc tgtcatgcac atcatcctaa
      361 attattgaat gtaataacta ttagtctgat gtctatttat agatattgtt tacttaatgt
      421 atcttcagct aattttgaag ggaaccttgc aatacagtac tactctatct tttacagatg
      481 cagtattgga ggcaactgaa aaatgatggt gttggaagtc tttaaaagta tggaaaaaaa
      541 agagcttttc tgttgtgtgg tgtacaggga ctgtgtagca ta
//
LOCUS       KCLJ01001891             686 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 211214cal ultra-conserved element locus
            uce-1948, sequence.
ACCESSION   KCLJ01001891
VERSION     KCLJ01001891.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 686)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 686)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..686
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="211214cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>686
                     /note="ultra-conserved element locus uce-1948"
BASE COUNT          193 a          133 c          160 g          200 t
ORIGIN      
        1 ttacatgcat caatttaagt ttggatggca actaggctta ttacaggatg aaaggtatga
       61 tatacatgaa agctgctttt gtggttatat tataaaatac tacatttcta tcacataatg
      121 taccactgct ttatttacag tgcttcacta cagccatatt ttactatcat gagacattcc
      181 ttgaccaaaa atgttgtttc taatcacaga gtaaattaat aagattgaca gtctaaatta
      241 aactaattta gtcaaatatg tgctaccata actaggccat agcagtgtgt gctgccatgc
      301 aagagactag ggtttaattc ttggattctg cttctcactc catgagcagg agctaggagc
      361 actccagagc tgcagcctca accctgggag ggatggagcc ttgtgtcatt caacagcagt
      421 gacccccact ggccaattta aggagaagca ttgaggggct ctaaaaggag tcacttccag
      481 tcctcctcag aggttggtgg tcattgcacg ggatctagtg agtggaggtt caatggggtg
      541 cacttggtgg ggtcttcagc tttcagtctg aggagcagaa tcctctgggg aggaaagagc
      601 atgtgcgctt cctgagacac tatttttgcc tgatataact gtaagtggca agattgtcaa
      661 gacagatgtc ctgtaacgaa tgctgt
//
LOCUS       KCLJ01001892             677 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 211322cal ultra-conserved element locus
            uce-5998, sequence.
ACCESSION   KCLJ01001892
VERSION     KCLJ01001892.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 677)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 677)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..677
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="211322cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>677
                     /note="ultra-conserved element locus uce-5998"
BASE COUNT          222 a          108 c          137 g          210 t
ORIGIN      
        1 tttaagcagg agaatgcacc tgagatgtga ccaacctgct tctgaaggga gctgcccaag
       61 agctacgtgt atcagccttt tgtcatcctg ccaggatcgg actgtaccat gctgcaaagt
      121 caggaaaatg agccaggaat atgggcaagg agagtccact tgctcctttt agctttatat
      181 tgcaattctg ctaaatagag attcttccca aaactgtttt aagattaatg tagaaaaaaa
      241 ttagaaagca ggagtggttt ggtgacatta ttttgacatg attggctgag gattatgatg
      301 taataggtta cagtgcagcc ccttataggt tttaaaatga attccaagac accattacaa
      361 agacagcctg actcttttct tgtatctgag cttactcagt gaaactcata taaatgtaca
      421 atactgtttg gaatatggaa gaactggata tagaatatcc taagacagat ataaattgtg
      481 gcacagactt gatgttttac atagaaatgg atccaccagg taaaactgct tatagaagac
      541 aattttggtc tttacaatag ctgctgaaaa attcttactg gatatgtagg atttctttac
      601 tttgttattg atacaaatag atttctcata aattagaata aaatagtgca tggttgtagt
      661 aattagaatc ttaacat
//
LOCUS       KCLJ01001893             414 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 211430cal ultra-conserved element locus
            uce-4485, sequence.
ACCESSION   KCLJ01001893
VERSION     KCLJ01001893.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 414)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 414)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..414
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="211430cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>414
                     /note="ultra-conserved element locus uce-4485"
BASE COUNT          145 a           58 c           75 g          136 t
ORIGIN      
        1 tagaataaca gcataacata tcttttagta tgaacagtat tcttattctt caaataatct
       61 aattgattgt tcattgagct cagtcagcca aaagtggagg gaaactttgt acagacatca
      121 ttagtttttc tccatttaaa gattaatcat gaagagctct ggctctttaa ttctgtaatt
      181 tgtatattta atgggctgct gcagaatcta tgacagtaat tagcatagcc cgaaaactca
      241 ttaatacgca acaacatgat taatgcagca ttaatgcaaa catgactgaa gttatttggg
      301 ttatgtagta agaagattaa agctaaaatg tcctgtttgt tttaccagta gtgggtataa
      361 tggggtagca agcaaaataa gaaaaaacag gtatcaaatt agtcatttta gtgt
//
LOCUS       KCLJ01001894             707 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 211537cal ultra-conserved element locus
            uce-868, sequence.
ACCESSION   KCLJ01001894
VERSION     KCLJ01001894.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 707)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 707)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..707
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="211537cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>707
                     /note="ultra-conserved element locus uce-868"
BASE COUNT          209 a          128 c          119 g          251 t
ORIGIN      
        1 tttttgtttt ctctccagaa gcatctaaga aatgttcagg ttgttgctgc ctaataaatg
       61 ttaataaatg ccagcaattt agtctgacaa taacatggat tgaccaaatt gattaaattg
      121 attatgtttc atgtatttac aatatgtaga cacaagccta atttattttc tgaagagttc
      181 aaggtaggta tcactggcaa aaacaaaaca atggagtaat gtttgtggtt gctatctgca
      241 ataatctaat gctgacagag agcagtattt tatttagtaa ttaacagtgt aaagggaaga
      301 gaagctgtca tgttggttct taagctgggg aatgtgatga aagatgatat ctgcgatctc
      361 atcctttcca cttgtttagg attgtcagaa tgagaaatgt cagcattatg aaagctcagc
      421 tctgctcttg atatgataaa acccttcaaa agccagtctt tctttccctc ctttctccct
      481 ctcctgcttg cacttgcttt ttttatttat cctgttttgt tagatggcag aaatataatt
      541 cttttctttc ttcctattat aagcctccat ttttgtttta ttatatgttt cacaacccct
      601 aatgccccac tgaaaattac cttgttaaat gacagtgttt caaagccatg aatcctttcc
      661 accattccct cagaggtttg aaacagtcaa cagactgtaa agaataa
//
LOCUS       KCLJ01001895             589 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 211648cal ultra-conserved element locus
            uce-1390, sequence.
ACCESSION   KCLJ01001895
VERSION     KCLJ01001895.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 589)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 589)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..589
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="211648cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>589
                     /note="ultra-conserved element locus uce-1390"
BASE COUNT          195 a          118 c          107 g          169 t
ORIGIN      
        1 tttcttgtgg cagctgaaaa gcttactatc caaatcctga atattttata gaaaataaaa
       61 tgatatttat ttttaagtgc attctacctt caacacaact gcatcctcac aacaaatcta
      121 ttgcgttgtc ctgacatagt tactgcaaag gtttttcctt tgctgtccca agggcccaat
      181 tgatttatct gccagaagcc caaagcccca aaataagatc gctttgagtt tacagaggtc
      241 atttttcatt gtctaaataa aaatttctaa acaaaaatct ctcatcctgt taaccgcagg
      301 gtccttatct ccccagaggc tacagaaacc tgagagaagc catttcaatt cttttatgaa
      361 gaaagataaa agcaagtttt cgattagaaa gccaaggaaa ggcttcttat taaatggtgg
      421 taacagtaac tagtcgaaaa ggcaaaagcg ttcaaggaag ggaaagggaa atcattatgc
      481 atgaggcaac cactatacat gaggctgcca aggcaatctg aggcagtgac attcgggaag
      541 gcaagttcac aagcctttgt aactagttat agttcattcc catctattt
//
LOCUS       KCLJ01001896             625 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 211760cal ultra-conserved element locus
            uce-5759, sequence.
ACCESSION   KCLJ01001896
VERSION     KCLJ01001896.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 625)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 625)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..625
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="211760cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>625
                     /note="ultra-conserved element locus uce-5759"
BASE COUNT          180 a          134 c          124 g          187 t
ORIGIN      
        1 tgactgagca tctgagagct tttctgcctt gagactttgg acgacgtgtt tccagagcca
       61 aaggacaaca agagttgact ccatattaat gctggacttt aaatgttttg actataaaag
      121 tgaaacccca ttacctattc cctgcagagc tccacttccc tctctctcct tgccttctcc
      181 tctccacact gtagcctttt gtatatctca ggcattaatc cctcgctgct gggttgtgta
      241 aattaaagaa taatagagct gcagaggcat aagctcgcaa tgatggggaa tgtgtttgta
      301 tgctaagaag caatttcagt gaaaattaac tcaatttcat ctgaaatagt gaagaccggc
      361 ataagctggc agatccccga ggatggtaaa attactttgt caaagctctg cttgcttaaa
      421 ttaaccaagc aagcactcca ggttattggc aagatgcagc tagtaactag gttttaataa
      481 acaaaaatag ctttttggat aaataagaaa agtgcaaagc atcttatgta ttctgctgat
      541 atgttcatct gtgtgtcctc aacagcaaga ccttcacatt cctccaggag ctttctggct
      601 ggtctgtctt cagagccttt gaaaa
//
LOCUS       KCLJ01001897             763 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 211868cal ultra-conserved element locus
            uce-53, sequence.
ACCESSION   KCLJ01001897
VERSION     KCLJ01001897.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 763)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 763)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..763
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="211868cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>763
                     /note="ultra-conserved element locus uce-53"
BASE COUNT          223 a          151 c          116 g          273 t
ORIGIN      
        1 attcgtattc ttgatttttt ctgactatta ttctaaaaac tttttttcct attaacctag
       61 gagctgatat gctgaaagta tgatgtttga ggtggcaaat gccaagcctc tctggaggtc
      121 aggaaatcca cattttaata catgaattca agtataggca agattgttat tattattctt
      181 gtccttctcc aattccattt tagttagctg ccttttaatt gcatgtatca gcaaacattg
      241 aataatgatt ttatctatat tctaaattta gagcagttaa atgcaaagca aaatgcagac
      301 actttcttgt gtcttaattg aatgaaggtc acagctataa caatatttaa ttgagctatt
      361 tttcattatc atattttaat gactttgcac tgacagttcg cctgcttctg aggaaagagc
      421 atgatgaagt cgtttatttc cctatttagt tattgtttga caacatcatc ttcgattaag
      481 actctgcttt atagcacatt aatcatattt gaatgagcaa ggggtataat gtaaacatat
      541 ctcccatcct ctgtgtttcc ccatgtccct gcatgaaagc aggctaaaca aatgcttgca
      601 tctattgtct gtttgcataa tagccaacaa caaggctaaa caccagtcct cagcaatcta
      661 attgtcacca cccctatctc acccttgcac ctttcaggaa gaagttatga tcttccactt
      721 ctgaatgctc aataattgtc ccatttatct caatttgcag ttc
//
LOCUS       KCLJ01001898             559 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 211978cal ultra-conserved element locus
            uce-7806, sequence.
ACCESSION   KCLJ01001898
VERSION     KCLJ01001898.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 559)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 559)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..559
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="211978cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>559
                     /note="ultra-conserved element locus uce-7806"
BASE COUNT          137 a          133 c          108 g          181 t
ORIGIN      
        1 tccctctcat catgggaggc aaagaagaca ggaaacaact tcagaggatt gagtcaaaca
       61 tttctgagat gagtggcagt gtgacacaga caggtaaaga ttaatgactc catcaattca
      121 cccctcaaag cttttctccc tgtatcctcc attctgccaa gacccccacc cttttctttc
      181 cctccatctc cactttatgt ggtgacttca tttatctgct ctgagaatct gttcacattt
      241 gcaaatgaag ccgccgtcat ttcggtttaa tttgaaattg cttgtttact gtcggcacgg
      301 cctcaattaa ttatgttttt acggaaaggc tcccaacctc agaatattaa taaggggaat
      361 aaaatgacag cctttcggag ggctgtaaag ttcattttta atttctgctt ctctgatgtt
      421 ttcaggggct ttttggtggt ttctccccac cttccatctg aaaatccgag gaagggtcag
      481 gagagtctgt aattactgtg cctctctgac cttagccacc ttctatgtta ttgactctat
      541 agggtgtctg ttcattacc
//
LOCUS       KCLJ01001899             597 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 212089cal ultra-conserved element locus
            uce-3440, sequence.
ACCESSION   KCLJ01001899
VERSION     KCLJ01001899.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 597)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 597)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..597
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="212089cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>597
                     /note="ultra-conserved element locus uce-3440"
BASE COUNT          164 a          106 c          136 g          191 t
ORIGIN      
        1 ttgccgtgat tcattttcag tgcatttttc ctaatggaag tagactgcat aaaagaatgg
       61 caaagctaat ctactgtaac aaactttgga tccagcttct ctgaggtggc tggttacatt
      121 ctaatttctg tgttgtgttc tagcttatag accagttaaa acctggcgga agattgatat
      181 taccagttgg ccctgctggg ggaaaccaga tgctcgaaca gtatgacaaa ctagaagatg
      241 gcagtgtcaa aatgaagcct ctgatgggag tgatatatgt gcctttaaca gataaagaga
      301 agcagtggtc caggtggaag tgattttctg ttccacttac ttcttccaca cacatgcaag
      361 gtgaaagggt gtgaatttta agcagataga ctgcaaggcc tgcctttgct gctgtcattg
      421 ctttctgctc ctccatacca tgaaaagtga ctcagtctgc attactacat cacccaaagg
      481 aggttatgct aagtttgagt taaattaaaa gcagaagaaa aatattgcat gggttgcact
      541 ttgtcggaca tgttttcttt agtctttggt gttttgaaga ttcttatttg ttgtttt
//
LOCUS       KCLJ01001900             532 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 212201cal ultra-conserved element locus
            uce-1128, sequence.
ACCESSION   KCLJ01001900
VERSION     KCLJ01001900.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 532)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 532)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..532
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="212201cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>532
                     /note="ultra-conserved element locus uce-1128"
BASE COUNT          151 a          104 c          132 g          145 t
ORIGIN      
        1 taattgtgtg aatgcagagt tttgaatcca atttcaggtt acacaataca gcagaatggg
       61 atgcgattga aaaggctgcg agggagggat gagaacacgt cctttcttct agccatgact
      121 attttgttgt gtctgttatc taaccctgta attaggacgg cattcagaaa atgcgaacaa
      181 agttggtatt cttttcataa cccccaaatc tttgcattgc tgcatgaaac ttttggcttc
      241 agcttttccc tgttcattaa ccatgccaaa atttttaatc taacaccact gttaaagagt
      301 ggcaggcttc cagggaaata tatcagccag gcttattaat ttcatgccaa gtgctggagg
      361 cgtgaatgta gagaacgctg tttgagtttg gataatagga atcaggcagc ttaaaggcag
      421 gggataaaga tcaggagccc cgtgtctcaa gaggaggagc aggtgcaggc tgcaagcaag
      481 gccttcaggc ccaaaggggc agccagtgct taaaacaatc tgcggtgcct tt
//
LOCUS       KCLJ01001901             789 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 212313cal ultra-conserved element locus
            uce-3826, sequence.
ACCESSION   KCLJ01001901
VERSION     KCLJ01001901.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 789)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 789)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..789
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="212313cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>789
                     /note="ultra-conserved element locus uce-3826"
BASE COUNT          233 a          152 c          146 g          258 t
ORIGIN      
        1 tactgactga aaacagctaa taaaggctca gttcaaagct gtctatttct tagtgggggg
       61 gaaagatgtt attctgacat cattgctctg aatgagcagc ctgtggttca tacagtatac
      121 gctcccctgg aatgacaaat tttctgcctt tttcttgggg ggaatgttca ggcaaaagga
      181 aaaaatgcat aagagaagca aagaaaattc atttgtataa gctggccccc ctactgtgga
      241 attttcaatt atatatatct aattatggct gtcagttgat gaattgagaa aagacatttt
      301 ttgtcccccc tccttttttt gtctcttcgt catctcttct gttagaatga ttatagcaca
      361 cttacacaac taattgcctt actgcttatt agtgatacaa ttatgcaggc cagactcctt
      421 gtgtgaacaa ccatctgcag agaaaaaaaa agtgacacta ttcaaaacta tccataattt
      481 aaccaatgtt attccaatgc actgagctca gacaattgtt gggccttcat atttcatacc
      541 caccctggaa aaagagggtt gtgggttttt ttcttttttc ctctctttct ctctttttct
      601 ctgtgcactg attcacctct ttagactcac tgtgaattgg aaagaaagaa aaaaaagagt
      661 gcttcatatg tcaacaaaaa ggagggaagt gaagcatggc taatgcccat tcctcctgtg
      721 ggcaattttt cttcaaattt taaactaata ggcatttttt tctgctttag agacagttga
      781 gaaagtgca
//
LOCUS       KCLJ01001902             490 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 212425cal ultra-conserved element locus
            uce-5235, sequence.
ACCESSION   KCLJ01001902
VERSION     KCLJ01001902.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 490)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 490)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..490
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="212425cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>490
                     /note="ultra-conserved element locus uce-5235"
BASE COUNT          155 a           78 c           91 g          166 t
ORIGIN      
        1 ctgtgctcag tgtagcatga cataaaataa attcagcaac aaagaaatga gatagttcca
       61 ttgtattgcc tgctcacagg aaattatagg taaagagaag tgacagtcaa gggttaaatt
      121 acgaaatttt gcaatttatt tctcatcatt tatgagattg ttaaatgtca gaaagtggac
      181 ttttttttca ctatcagtat aaaactgaac atactgtgag acataaggta gcaggtgtct
      241 tggctctaaa ctatcaagtc tgtgggcatt ctgttataac aggtgctcca aaaatttgaa
      301 cagattttaa caagagctgt atgggctttt taattagcct ggttactcag catgtggaga
      361 aagcactagg tatgtgctta aaacaccatt gtatcttgca aacaaatgtt tcacataccc
      421 atagtcattc ttttgcttgt tatctttaaa ttcctttcta tctgatgcta ggatttgatt
      481 ctgatattca
//
LOCUS       KCLJ01001903             581 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 212530cal ultra-conserved element locus
            uce-1500, sequence.
ACCESSION   KCLJ01001903
VERSION     KCLJ01001903.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 581)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 581)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..581
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="212530cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>581
                     /note="ultra-conserved element locus uce-1500"
BASE COUNT          199 a           96 c          103 g          183 t
ORIGIN      
        1 gagccacata aagcttaatt tcagttgcaa attgcaagct ggaataagtt ccagaatagt
       61 aaacaattag ctgctttatt ttctttttaa taagactaaa ttaccagata atatctactg
      121 gcatcaactt ggctaataaa aatctgttta ataggatttg ccatttttcc agttgctatc
      181 atgatcagct ttgcattttg attatcttta aactttgcct caattttctc atagaaaagc
      241 tctcagtagt aattgcttta acatttattc caggtcaagt ggttaagtat gaataatgat
      301 gtgtcaaaaa tgtacagtag tgctgtcaat agagcaatta ccatttagct agagattatt
      361 ctggcacaag agcacattaa ctgggcacag taaacagaac aacaaagaaa gaaggggcaa
      421 agggaacaaa ctgatttcaa aacctgccag tattctacag tgtgtgttac tgccagatat
      481 tagttgttac ataagagcaa ttaagtctgc aatcagcttc actcggcagc attggattag
      541 aatgtttcca attagaacaa gaagttagaa gcatgtttct a
//
LOCUS       KCLJ01001904             711 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 212640cal ultra-conserved element locus
            uce-95, sequence.
ACCESSION   KCLJ01001904
VERSION     KCLJ01001904.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 711)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 711)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..711
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="212640cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>711
                     /note="ultra-conserved element locus uce-95"
BASE COUNT          228 a          136 c          164 g          183 t
ORIGIN      
        1 agattagaaa gtctcagagt gagtgacaaa cccctgtgtg gtatctgatt taggttttta
       61 ataaaggtca aagagaaata atctccaaag acagcagcgt ctcttactct tttatttcac
      121 ccctttacag ctaaaacaca cacacgcaca cacaaaagga aacaacaacc aaagaggagg
      181 ggaaaaaaag cctgaaattt tagttacacc acatgtggtt ttcatttgtg aaaaatgaac
      241 aagctgtttg tggttaaact gtctaatctg ctgttatcaa tctagcactg cattcaagat
      301 ttacaggata catcagcttc tgtgccacat tagctgtaaa agggagaggg ggtgggagga
      361 aaaaggagga ggagagagtt tatcctgagg aataatattt ccaatgcagc cacactcaca
      421 ctacatctgg ttgtgctggt agcggcagtt aaattgaaat atttcacagc gtgtgtcaga
      481 aacatgcaga atggtaatta tgacagatct gattaagcct gagtgccact agctccctgg
      541 ccagctccgg ttgtgcaggt gtgaccttgt gcgtgcctgc gtgtgtaaat aaaattaatt
      601 acaagcgaga gggcgaaggc ttcggtgaca tcacaaagcg gagaaactcc caagggggag
      661 acctaatgga atattttccc tcagtctaat aatacagttc atattgactt g
//
LOCUS       KCLJ01001905             795 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 212743cal ultra-conserved element locus
            uce-1012, sequence.
ACCESSION   KCLJ01001905
VERSION     KCLJ01001905.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 795)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 795)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..795
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="212743cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>795
                     /note="ultra-conserved element locus uce-1012"
BASE COUNT          205 a          162 c          157 g          271 t
ORIGIN      
        1 ttttaatata aaaaggcttt taggcataac tgtatggaga gatatataaa taatattaat
       61 ttccccattt acttctctag ctgtttttgc aagaatgaat gtggattaac attgttatcc
      121 tttcctaaca attatctttc gctactctag ctagtttagt tctaaaagac agagccattg
      181 acaagggaaa aaagggaacc ttctcagatt tttcagctca gcggtggtaa tgttgcactg
      241 aacactaatg agggaacccc cactgatttg cctgctttgt gacttttcta tttcataatt
      301 atttttaaaa cgcaaaacga catgaggtag cctagtcatg tctctacaac ttcctggtag
      361 ctcagttctt actgcagatg gcaatttgtt cttgtaacat atatgtctct ctgtccattt
      421 tcatctaatt tgtatgggtt ctaccatttc ctttctctct ttcagggacc ttgctgtgtg
      481 tgagctaggg ggtggcatga catgcttggc tgggctcatg gtaggtcttt tctcaattcc
      541 aatcccattc agaggaagaa acaaaaggaa aaatgttcca gtgcctccaa ctgctgggtc
      601 agagaactgt caacagcctc agctgcggtc aagctgcaga gtcttgagag accttctaga
      661 ttgacttgct ttcgtatcat attgatttta tggttgcctc gatgagcaga aacattttac
      721 ctcggtgtag tcaatatctt ttgttgtgac attccaggcc acgtactgtc tttcattgcc
      781 atagccgaag ctttt
//
LOCUS       KCLJ01001906             514 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 212852cal ultra-conserved element locus
            uce-5479, sequence.
ACCESSION   KCLJ01001906
VERSION     KCLJ01001906.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 514)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 514)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..514
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="212852cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>514
                     /note="ultra-conserved element locus uce-5479"
BASE COUNT          129 a           86 c          114 g          185 t
ORIGIN      
        1 tgcctccact ttatgtggca gtttttggaa actggaaaaa gcttccatac tgctgaatga
       61 aaatacagtc tgatgagtct gtctcatagg tgtcattttt ggtttggttt tttttttgga
      121 tgggagctgg aaatacctca gcaatgttgt tgttccagtt caaacagtaa tcaagacttg
      181 tcaagaggtg taaaattgtt ttaagtttta ttttattttg tatttaatgt gattatgtgc
      241 ctttaaaatg ttctcccttc cattctgccc ttgtatcttt gcagtcattg tatacagcag
      301 attctagaaa gtgttaatca ttgtcatcta aatggcatag ttcacagaga cctgaaggtc
      361 agtatctggt gcccatcaat tggatataag aattttgggg ttttctttcg gctgggtagg
      421 ggcagagggt gggatgtgtt cccttgccta acaacaataa tgcatgatgc ctctttcagg
      481 tgtgcaagtc tacaggccta atatacatca tggc
//
LOCUS       KCLJ01001907             512 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 212953cal ultra-conserved element locus
            uce-3557, sequence.
ACCESSION   KCLJ01001907
VERSION     KCLJ01001907.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 512)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 512)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..512
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="212953cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>512
                     /note="ultra-conserved element locus uce-3557"
BASE COUNT          186 a           96 c           76 g          154 t
ORIGIN      
        1 cctctacgat gatgacagct ataaacatct tattccaccc tttcatagat gtgcaaaatg
       61 tgttgtcaat cctttctgca ataaaagaat gctgaggcgc catcacacaa aagcttattt
      121 ttttccaaac agcaaatgtc tataaaaata cagtcctacg tctctgtgat agataagaaa
      181 tactaaagga gcaataataa ttaatggcca tacgagatga aactccagtt actcagacgg
      241 ctgtctccac ataatctgta ttttatacaa aaggagaaag aactcaatgg aatttcagct
      301 gtgaccggat aaaaactgcc aacaaaaagt gataaggaaa gtctaatgtg catattaatc
      361 atgtttatag cgcctcattt gctgatatat tagcctaaac tccctttcaa aacacatttt
      421 tgatcactgg tagaatcatt taatacaatc aaactttaaa tgggaccaat taatgtttcc
      481 atcttctatt aattaaaagt aattgattat ga
//
LOCUS       KCLJ01001908             580 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 213064cal ultra-conserved element locus
            uce-6770, sequence.
ACCESSION   KCLJ01001908
VERSION     KCLJ01001908.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 580)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 580)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..580
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="213064cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>580
                     /note="ultra-conserved element locus uce-6770"
BASE COUNT          196 a          118 c           94 g          172 t
ORIGIN      
        1 gcataaataa cacacttgaa aaactaccaa taaagggaat tttaaagtta gttgttgatt
       61 gtacaaagaa caagtcaatg gactttttgc ctccttgctt tcctcaggag tccattacct
      121 ttcacaaaga aaattttagc tatcaaactt gtccataaat tttgccgctg agtgtgaaac
      181 catccagtta gcatatacac tatcatttgc atatcttgaa aacacagagt tagtgccatc
      241 gaatcttgtg agtggaacgg ggctctcctc aggccagttc gggtatgaca tgcctaaaaa
      301 tgaaaacaga taattttttc tgcactgaag aaccataact tcatgtgcag acagtaaggc
      361 ccttggcaaa actcccttct ttaagccagt ccactggatt ttgtcccaaa tcaattcata
      421 taaatggtgt tttgaaatcc ctgaagcaga aattcagatg caggcaaaaa acctgaataa
      481 attaaagtgc ttactcaatt gcacatgtgc ataataaaaa gctaagaact gttcttctca
      541 tccaactttc cataattttt aatttaacaa tcatgtagca
//
LOCUS       KCLJ01001909             428 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 213166cal ultra-conserved element locus
            uce-2169, sequence.
ACCESSION   KCLJ01001909
VERSION     KCLJ01001909.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 428)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 428)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..428
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="213166cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>428
                     /note="ultra-conserved element locus uce-2169"
BASE COUNT          124 a          101 c          137 g           66 t
ORIGIN      
        1 aatgagtaac cagtcccttc ctactgaaaa cactcttggg aaaagatctg aaagttagga
       61 gcacagcaga gcagggcctc cccgtgagca agcttgtgtg ggaagcaagg ccgagcactg
      121 gctgccctgt tcctgccccc aggttacaag acagatccat gagcatgagc aggagaacga
      181 gctgcgggaa cagatgtcag gatataagcg gatgcggcgc cagcaccaga agcagctgat
      241 cgccctggag aacaagttga aggccgagat ggacgagcac cgcctcaagc tgcagaagga
      301 ggtggagaca cacgccaaca actcgtccat tgagctggag aagctggcca agaagcaagt
      361 ggctgtgatg gagaaggagg tgagtgctgg gaggatctga gacaggagaa aggtttgctg
      421 ctcaaacc
//
LOCUS       KCLJ01001910             574 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 213262cal ultra-conserved element locus
            uce-2697, sequence.
ACCESSION   KCLJ01001910
VERSION     KCLJ01001910.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 574)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 574)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..574
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="213262cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>574
                     /note="ultra-conserved element locus uce-2697"
BASE COUNT          175 a          108 c          122 g          169 t
ORIGIN      
        1 actagacagt ccccagggat ctgtggtttg aaagtaaaat gggtattgtc tgtacctctt
       61 taggctgttt tccagcatgt tgttgctgta aaagttgaag ctgcaactgt tcctgttgtt
      121 tcttataaaa ctcttgaagc tgctgctaca aagaaaagga aagatggtaa agtggagagc
      181 caattcagtg tcccttttgg tgtaacacac aaactgtgat ttgaaaaata gcatcctttt
      241 atctgtaatg gtctgacctt tagtttgaaa ctcaacaata aattcagtgc acactgacta
      301 ttcttggcat tatcgtttga aaagtaatct ccaaaatgaa ctgatgaaaa acataccatt
      361 ttctacacaa actaattaaa ataaggcaag gaatgacctt tgattgtaac aacaaagcca
      421 aaatgccctt gctgagggcg gatctctgtt gtgaaacaca catgctttct aaatgatagg
      481 gtttgactgt attaagtgtt gttcaataca tgcatagaca tcctgggaaa cacttgtgct
      541 ctgcgcaggc agcgctccgg ggcaggacgg agcc
//
LOCUS       KCLJ01001911             355 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 213372cal ultra-conserved element locus
            uce-5502, sequence.
ACCESSION   KCLJ01001911
VERSION     KCLJ01001911.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 355)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 355)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..355
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="213372cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>355
                     /note="ultra-conserved element locus uce-5502"
BASE COUNT           93 a           84 c           87 g           91 t
ORIGIN      
        1 gttcatgtcc tgaatgggcc aggcttgtta tcagcaaggc gtttacagcc cctgggctgt
       61 gcattaatta aaaaggcttt gtgctgaggc tcattcatta gcacactgct cctttaatca
      121 ctgcctcttc agccaccagg acaatctata aatctcctca aatatgaaat aatgaagtgg
      181 aatggttcaa tttattacaa tgtaataagg caggataatg tggggggtgg cactggagct
      241 gtctccttgc ccactcttcc cacttccctg acagggacca tgagtgagaa gggcaggagg
      301 gatgcaggac aggatggaga atgcccagga cacagatctt cccatctcct gccat
//
LOCUS       KCLJ01001912             720 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 213464cal ultra-conserved element locus
            uce-1408, sequence.
ACCESSION   KCLJ01001912
VERSION     KCLJ01001912.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 720)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 720)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..720
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="213464cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>720
                     /note="ultra-conserved element locus uce-1408"
BASE COUNT          215 a          118 c          150 g          237 t
ORIGIN      
        1 atgcgtgtgt gtcatttaca aatgcaaaga taacagcaag ttcttagttg gcaccaaatg
       61 ggggaccgtt aagtatgaga aatgatgtcg atttatcatt atattatgcc tctgacagcg
      121 aaacacacct gtacttttta tgtaatttat tgactggtta tagatgctgt gcgagagagg
      181 aaaaaattag cgcagcttta attactcatg ctgctggtta aaatattaat ggggcacaga
      241 gtgttgcatg ctcatttctg ttgattttta attagcagta attcattttg cacaaagcat
      301 gttgatgcct ttgccggaga cattagcgaa gtagctgaat aaagatgttt ttgagagagc
      361 tactgtgcat acagaataaa gagtgcctgc tttctgtctt gtctgataaa agttgggcaa
      421 agagggagac agatgatgaa accaaacaat accggagcat catggtatag ctttacattc
      481 ctgactttaa caaatttgga gttttccagc tgcctgattc tctggaatat ccaagtaccc
      541 ttttttgatt attatttttg actgttgtca aaaccagcca gaatgagtga aggcagtttt
      601 tgccattaat gtcataaaaa ttatttctca tggaaaaaca ccttctgatg tattagttgg
      661 gatgggactg tcccttcttt ctcttatcaa catatatcta catttcacag tggaaatgat
//
LOCUS       KCLJ01001913             553 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 213576cal ultra-conserved element locus
            uce-6381, sequence.
ACCESSION   KCLJ01001913
VERSION     KCLJ01001913.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 553)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 553)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..553
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="213576cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>553
                     /note="ultra-conserved element locus uce-6381"
BASE COUNT          153 a           94 c          135 g          171 t
ORIGIN      
        1 aagttccatc agaaacaaag tagttctttg gatggttcct ctttgttttt gtcccaaaga
       61 tggcatctgg gttttatcta aaccagacgg tttcttggcc ctcatttttc cctaaaccca
      121 gcaatgacaa agagcaacgg ctgcataaat tggatgtaag aagaacactt agggtttatc
      181 acagaagaat caaagatttc atatcttctg acagattgtt tgtactctta gggggtctta
      241 agaggggtca aatggcttct aagagttgct tagctagatg gttaagggat tgtattagag
      301 aggcgtatgt agttaagggt aaagaggctc ccagggtttg taaagctcat tacactagga
      361 ctatagctgc ttcttgggcg gagaggtcga aggcttccac attggaaatt tgcaaggtgg
      421 ccacctgggc ttctcttcat actttttcat tgcattattg cttggatgta gtctcttctg
      481 cagattctgc ttttggtagg aggttgcttg tgaaccaaaa aaagaacagt gaagaaaaga
      541 aagacatgta gtt
//
LOCUS       KCLJ01001914             386 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 213682cal ultra-conserved element locus
            uce-7491, sequence.
ACCESSION   KCLJ01001914
VERSION     KCLJ01001914.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 386)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 386)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..386
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="213682cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>386
                     /note="ultra-conserved element locus uce-7491"
BASE COUNT          103 a           98 c           75 g          110 t
ORIGIN      
        1 gctgcgctcc aacagccttt ccgctgggga tgcccacgtg gcaccgcagc gcccctcgca
       61 tggcatatgg tgtctggatt catacaagat gcaaaactat tctgccgcta atgcacaatg
      121 actcatagca ttgctaattt ttccaacaaa agcctacttc cacacccaca cttttaaccc
      181 ctcaggctaa aaagcctctt ctttagtttc aaagccatgg aaatgtaagg cttctggatc
      241 aatatctgaa accctatatt tatttaaagc atatgcacgc tctaacgcgt attttaaatt
      301 tctgtgaaag ccggtttgca aattgccact ataacgtgcg gcagaaagtg gattcgttgt
      361 caaatgctgg ggtctaattt ttcggt
//
LOCUS       KCLJ01001915             528 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 213788cal ultra-conserved element locus
            uce-319, sequence.
ACCESSION   KCLJ01001915
VERSION     KCLJ01001915.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 528)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 528)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..528
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="213788cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>528
                     /note="ultra-conserved element locus uce-319"
BASE COUNT          146 a          114 c          113 g          155 t
ORIGIN      
        1 aatccacacc tgttcgacag ttcaatagaa ggctgctttt gatggaagca gactttcaag
       61 ctcatgcaca ggcataggcc acacacccgt gcacaaacgc gtgcccaaat tcacgtttca
      121 gctggaggaa aaatagagtg tgagttgatc agaaaataat attgtgaggg cttgtgtttt
      181 gtggtcattg gaagattgct gatgggtgca taaataaagc atgctggaac atctgttctt
      241 tgttgtgcat tcagcttttt aatgtcttca aagagcagca ctgacgcatc actgactacc
      301 actccccatt caagcaacat tttaccagaa aataataaac cttcctggtg gggtgcaagg
      361 agccaaggca tttgggcaat gccattaatt tggaaatatc tctttttctg ggatttttaa
      421 atatctctcc ctttgaacgg tgttcaaatt ttgggatcca gcctggagtc cctatcagcc
      481 tgagcagtaa atcagcctga atattccact caagcctatt ctttctgt
//
LOCUS       KCLJ01001916             707 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 213890cal ultra-conserved element locus
            uce-1027, sequence.
ACCESSION   KCLJ01001916
VERSION     KCLJ01001916.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 707)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 707)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..707
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="213890cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>707
                     /note="ultra-conserved element locus uce-1027"
BASE COUNT          212 a          122 c          115 g          258 t
ORIGIN      
        1 acctctaagg aggtttgaat ttgataaatt tgtacttttt ctagaaggct gcagaggaat
       61 gatagaaaat aaaatgtatt tccttgtcat cttgcttagc accatgagga tctacctcac
      121 tgttctctaa aatggtcaca cgagtacgca gatcccagcg tgatttcctg ttccagcaac
      181 tctgtgggac aaacttgcag aagaagtttc tacacaaaga aacaggtact cagggtgggt
      241 gcagacttga ttttacaagt acatctgttc tgtttatttt tgcttctttg cagtgttatc
      301 aacttctgct ccatatggat gatccatatt gtgccttggt gaaatgatac cacattatgc
      361 ttttatgctt ttatcatcaa acactactca tgaaaaaatc accaggtttg cttaggttca
      421 tctgttcaat ttattttccc aaaactttat tttgaataaa acacctacgg taaatgtgat
      481 ttatgtaaat gaataaaaca aaacagttat ataagctttt tgaatcattc agattatttc
      541 tgtttctgtg tatgaaatac tctaccaaca tattttcttt gggctattta atttctgaag
      601 tcttgtagct aaatgtatgt aataatagga catgtacaaa ggctttcatt ttgattttat
      661 ttccattctc tatgccaatt ttttcagaca aagaagatct aatattt
//
LOCUS       KCLJ01001917             760 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 213999cal ultra-conserved element locus
            uce-5629, sequence.
ACCESSION   KCLJ01001917
VERSION     KCLJ01001917.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 760)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 760)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..760
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="213999cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>760
                     /note="ultra-conserved element locus uce-5629"
BASE COUNT          228 a          138 c          140 g          254 t
ORIGIN      
        1 aggagccaat aattttgttt caattgatca gctttttagg cagtatcctt cggttgagac
       61 ttttcagata agtaaagtaa attaggttga aaacaaaatg ctagttcctg aaatgtggat
      121 tttacaatgt atttttgatc tgataggagc tcagtagcat ttcttctatc cgctggaggc
      181 ccactgagct gagcatactg tactctatca aagcccagtt ctttgcagct cagtgaataa
      241 aatactgcag tttctcccat tgactgactg aaataaaata atctatgatg catgaacaag
      301 tctaaatgaa ataataatat ccttagcagt gaaaaacgga ttggtaatac agtaattgag
      361 cagatttatt gccatctcct tgagctagcc tgctgaaaca gcctgctatt ttatttaatc
      421 tcatatcaga ggaattactg gctggtaatc cattgttaaa catcatttag aatgatggat
      481 gaaaatgtca gcttttccaa cataatcaat tcatatctca ttagcacata ttatttatga
      541 ttctcataat gggacctgca ggggtctcca gggggaaatg gagacctcag ctgttgttga
      601 aatgagatga gatatactgt agcttatgag ttaataactg catataaaaa atacttcccc
      661 acagtattga ttgtccttac cattttacaa atgaattcag tgtcttggct tcccctcttg
      721 ctgtgtatgg cagctcttcc ttctattcat tttgttgctc
//
LOCUS       KCLJ01001918             523 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 214090cal ultra-conserved element locus
            uce-5038, sequence.
ACCESSION   KCLJ01001918
VERSION     KCLJ01001918.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 523)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 523)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..523
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="214090cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>523
                     /note="ultra-conserved element locus uce-5038"
BASE COUNT          166 a           79 c          106 g          172 t
ORIGIN      
        1 tcttaacgtg cagatagcag ggatgtgtaa tgtaaaccat accaccaaac atattatgaa
       61 tatattgctc ttcttaaaaa tgcttgttgg tttttcatac tacagtattg actaactgtc
      121 ggtgtttgat gtatggttta ccagcctgat gtagacttat ggttagagct taacttgtta
      181 gttctgcttt tgcagccaat tcagaataac tacagatgcc ccaagatatt aaaattgact
      241 gctcaaatgg actcagtgtg ggagtttcat tggttttaaa ttgataacag ctgaaagagt
      301 gaatgattaa agctgtatat gggcatagta tgcagctcct ttgtacgagc ccttgtgaac
      361 agaatccact gcatgggaat tgcctttgtt ctaataaaag atatttctga acaattgtta
      421 gtttaaattt ttaaatgatg aaacaagagc atttcaggag cctatagagg aaataattcc
      481 tgagaaactg gaataactct gagaagataa agtggatttc tat
//
LOCUS       KCLJ01001919             800 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 214196cal ultra-conserved element locus
            uce-7558, sequence.
ACCESSION   KCLJ01001919
VERSION     KCLJ01001919.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 800)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 800)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..800
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="214196cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>800
                     /note="ultra-conserved element locus uce-7558"
BASE COUNT          214 a          182 c          142 g          262 t
ORIGIN      
        1 aaaatcagac tctgaaatat ttgttaactc cattgatgtc aaatgcactg attttctttg
       61 gacaaggatc tattgcttta agtttatatt caatataaac atcatatgca ataataaatc
      121 ttaggagcac atgctcagat tgtttgattt ataatttcat ttagtgtaaa gcttttcatt
      181 ccattcttgt gtttctcgtt cctctgtaac aaccttgtaa atgtgacagg gaagctcaga
      241 tctttgccca gcaaacaata tatattattt gctacatgaa agtggtgcac aactctctta
      301 aatgttccct agcagactcc tattgcattc cacaatgtgc ctgcacttga accacctcca
      361 ttcatatcag agtcttttta tcccagcaca cattgagcaa gctgctctga agcttaattc
      421 tcctgaccct tcagtgcagt cggatattgt cacctaatcc ccccttctgt cccatgtgtg
      481 gttttgactt ctttctcttt tcaattcctt tttcctcttc cctttttctt tctttcttat
      541 tctataagcc tctctccagg ctgcacattc cagaattcat ccttgcatta gggctgcaat
      601 acaatgctct cccagtgtta aaggattaga cattaaggag actgtggcaa ctccagcctc
      661 actcggagcg cagggggaac ataaggggga gctcccgcta aagaggaagg aggctgagaa
      721 acaatctcag caaaaccaga gtgggtgagg tttgtgtgat taaaagtgtt taatgctctt
      781 tctggaagac agcaaaccag
//
LOCUS       KCLJ01001920             646 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 214309cal ultra-conserved element locus
            uce-2233, sequence.
ACCESSION   KCLJ01001920
VERSION     KCLJ01001920.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 646)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 646)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..646
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="214309cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>646
                     /note="ultra-conserved element locus uce-2233"
BASE COUNT          159 a          155 c          133 g          199 t
ORIGIN      
        1 tttcctgttg caggatcaaa ccctgccact attttttttc tctcctgaaa gaaaacagtg
       61 ttcaattgag tgccatttct gctctgcgtg aggctcagtt tgctaacagt gagtttagtt
      121 aacttcatat tttggacaag cttgtaaatt tgttcccttc taatgctgtg atcttatcaa
      181 ggttgtactg ttttcctttc ccccatcttc tttctttccg aagtgcagcc ttctgatcaa
      241 tgtgcaccca tttccctaaa tacatcatga aaaaggatga ggtttccgcc ttaattgctt
      301 gtgcctttta ttcacattcc tctcccagcc agaattgtga aaagagtgtt agtaaaaggc
      361 tgcacaatag agcttttcat taggcctcaa cgaggcacac aaaggaaggc ttttggaaag
      421 agtgcaggac tttaatttgc aggtggagag cagataaaag gtgctgacgc ctctattatt
      481 ctcttactta ggtgacccct accccgttca gctgatccca actaccatgg cagctgctgc
      541 cgcagcaacg ccgggcttag gccctctcca actgcaggta agtcccagct ccatgcaggg
      601 gaggcaaagg ttaagtaaat atgaaaacca gttttccttt cctgtg
//
LOCUS       KCLJ01001921             359 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 214416cal ultra-conserved element locus
            uce-3709, sequence.
ACCESSION   KCLJ01001921
VERSION     KCLJ01001921.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 359)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 359)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..359
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="214416cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>359
                     /note="ultra-conserved element locus uce-3709"
BASE COUNT          119 a           67 c           58 g          115 t
ORIGIN      
        1 agacgagagg acagttcaga gcactggatt aattccactt tctccctctc gctctctcat
       61 taggaaaata aaagagactt tgaaatatta agagagagtg ggattagagc cctctcctgc
      121 taccccagtc tttcctcccc tattaatttc cacttgatta gaattctttt tgaagtattt
      181 aaatatggac aataggaaaa agggagggtg aagttattga atatcagtta aactgtatta
      241 atataagctc agttccagct tttatataga tacttcatat atatgtatag tttccactag
      301 gaataaagta gatctatccc tcctccccta cctaaagtaa ttatgattta aaaaaaact
//
LOCUS       KCLJ01001922             634 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 214517cal ultra-conserved element locus
            uce-6, sequence.
ACCESSION   KCLJ01001922
VERSION     KCLJ01001922.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 634)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 634)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..634
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="214517cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>634
                     /note="ultra-conserved element locus uce-6"
BASE COUNT          205 a          108 c          109 g          212 t
ORIGIN      
        1 aagtttcaac atctttcaat tattaggcag attttaaggc tcttgtaagt ggtgcaatag
       61 tagcaaatgc cagctgatat tttacagaaa tattaaaaat accatttgat tgcaagaacc
      121 tccaggaaca tatcttcatt tttggtagtt tagtccacag taacaaaaac cacattgtac
      181 caatcagata tttaatgagc ctctaactcc atttctacct tatcccaaag gtatagcaaa
      241 tagtgctgct tttttaaaat atcaagaaaa catcatttgc tctaaaatgt ccctaaaagc
      301 aggtctaaat tgccaataaa ggctaggtaa ttgtatcagc atggatcaga aagcatttct
      361 cagaactgat gaaatagttt gcggtattgc agaacctgaa tgatgctctc tgtacattac
      421 actggaaata tcaaagactg gtctcagttt aatttgctca ctactgtgta ttttggattt
      481 tcaggaaata tttctcgcta atgtcattct gttttgcttc aaatgtaatt tgtttgggga
      541 aagtcaggcg atttctgcaa tcaagggttc acttgggttt tcgattaaga atactattgt
      601 taagaaaatg gcacggttta aaattttcaa atcc
//
LOCUS       KCLJ01001923             457 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 214627cal ultra-conserved element locus
            uce-2593, sequence.
ACCESSION   KCLJ01001923
VERSION     KCLJ01001923.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 457)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 457)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..457
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="214627cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>457
                     /note="ultra-conserved element locus uce-2593"
BASE COUNT          114 a           97 c          126 g          120 t
ORIGIN      
        1 acaaggaaat gctttgagcc aaacttccca gagggaagga gtgccaccat tccctccttg
       61 tgctcttcct ggggcgcaga ttgccagcta atggggcgga gctactgcaa gcactctcca
      121 ttaatggagc agaatataaa cagaataaag ccttcatttc ccgggctgtg atttcattat
      181 taatatactt tacagttcac aggttgttca tttgcttcca tgttttctca gctggtgtaa
      241 tctgctgcgc ggagtgagaa gagtcgtaaa atttccattt ccagttgaat gtgcgtccaa
      301 ttcgccatga aatgtttctc tctgtcgtga atattaagtg cccgaggagt cagtggcccg
      361 caggttgcca gctctgtgtg tcccaggggt gcaggagaga agtgggtgtg acaaggcaaa
      421 gtgggggact gagggaaaaa ccatgtggca gagagag
//
LOCUS       KCLJ01001924             571 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 214733cal ultra-conserved element locus
            uce-4839, sequence.
ACCESSION   KCLJ01001924
VERSION     KCLJ01001924.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 571)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 571)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..571
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="214733cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>571
                     /note="ultra-conserved element locus uce-4839"
BASE COUNT          185 a           85 c          119 g          182 t
ORIGIN      
        1 aaattaattc taggttattg tgcaatgagg tgcaatttgt tcatttatat gaaccttatg
       61 tggattgaaa aaaatcaaga taaatcttca tgcacagcat acaatcagat tacccctgga
      121 ctatatattt acgttgggtc tgatagcaat caatggttta gcttcattgc atttcaagat
      181 gtatttgcac ccagtgtcca gtgatagtgt cctcaccctg gaaataattt agttgcaaat
      241 tgactggaag atggtgaaaa ttgaaagtta aaattagaaa tactcataat aaacagcaga
      301 aaaaaggtca gatgatgccg cactatgatg agattggaat ggttggtaaa tgaggttttg
      361 tgtttgtcgt gagatgtatg tgacatgcct acccaatgct cttgtaatat ccagcctagc
      421 agaagagatt atctggcaaa ttgacgctgg aaagaatttt ctgatggact gggaaattag
      481 aattgcactc ttttctttga tgtgtgcaag actgggctgc attacacagc tagctcaggc
      541 ataatattaa atatagtatt taatacttaa t
//
LOCUS       KCLJ01001925             574 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 214845cal ultra-conserved element locus
            uce-5142, sequence.
ACCESSION   KCLJ01001925
VERSION     KCLJ01001925.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 574)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 574)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..574
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="214845cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>574
                     /note="ultra-conserved element locus uce-5142"
BASE COUNT          177 a          110 c          101 g          186 t
ORIGIN      
        1 tacttattct ctcttcttgt cacagatttg ttttattttg ctacagcaat acattattac
       61 aacttaaaat tcacattcac ctgaagaaag ctgtgacatg cctaccaaaa gagacataca
      121 ctgcttaacc taaattgacc cttttttcct tctattctaa tagatctttt ttctttttgt
      181 cactcaaaat gagtgtctga tgtatgagca taaattgtta aaagcagttt taggtaaagg
      241 aagagagact gaagtggagt tttctcacaa aagccaacct caatttatgt caaagagggt
      301 taaaagacct tgggattaaa gcaataaact tgctgctgtc aaagctaaaa cccgctaaca
      361 atttagtgcc aaacgcatgt tgttcaatat catttcatat tatattatgt cacaagtagg
      421 tgacagttcc acatcagact gacagggctg atttactctg aagaattcat cgacattttg
      481 cagagtcaaa gctgacttca ttttgtttgg atgcagggtg ggaaacctct ccctgagttg
      541 gaatatttgg ctgaatctca tggcacagag ccct
//
LOCUS       KCLJ01001926             471 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 214950cal ultra-conserved element locus
            uce-4833, sequence.
ACCESSION   KCLJ01001926
VERSION     KCLJ01001926.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 471)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 471)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..471
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="214950cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>471
                     /note="ultra-conserved element locus uce-4833"
BASE COUNT          177 a           68 c           77 g          149 t
ORIGIN      
        1 agaaattgca gatttactta caataagtta ctgaaacggt tttgcataaa actgtaaatt
       61 aaacttaaaa gtgtgaagaa atcatatcgt caatttagat acacttttat ctcttcagaa
      121 agattaaaaa tgtaacacct taggtttagc actgtgaagt ttgacaagca ttgaaacaaa
      181 aaaggaagtg taaattttac taatcaaaac atctgtacta tgcagccatt tacattttcc
      241 tatcaagaca tgagagaaat gttaatttta gacgactctt tttatgacct ataattactg
      301 tcattaagaa agctctggag acgtacaggg agctttgact gaaatacagt ttgacatgtt
      361 ctataattaa tgctgaatta acgtgctaca gtatgtgcct cagaagaaaa aggtttcttt
      421 ttactcaaag aaaagtgaaa gaaattgtat tacagtaatg cctgctaaca t
//
LOCUS       KCLJ01001927             778 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 215055cal ultra-conserved element locus
            uce-497, sequence.
ACCESSION   KCLJ01001927
VERSION     KCLJ01001927.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 778)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 778)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..778
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="215055cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>778
                     /note="ultra-conserved element locus uce-497"
BASE COUNT          288 a          133 c          128 g          229 t
ORIGIN      
        1 caaccaaagg ccacacagat cctggcaact cttgacttgg gcaaaacttt tatttacatg
       61 ttaattaaaa aaatacttga caaaaaaggc atacagtatt ttatactaaa agaataaaga
      121 tttttattaa gcactgtaag ttgcattcaa tagccttcaa agacaccaca ccacaatcca
      181 tctacaacca gccaaaccca acagtagttc attcttgcac aatccatgag ttggggcaga
      241 actcccttca acttacatta agatacctac ttagctctgg cgggcaggga atggggaatt
      301 acacctcatt tctgatcact aatgtgtgat gaagagcatc aggagaatta tatgaaaacg
      361 aatataaaga aatgattctg attttgaagt acattaagtt tggaaacact aacaaaaaca
      421 tcaaaatgat acaggtatat ttgcttatac taaattcttg atgggaaagt tctcaagaac
      481 aagccatttg tttcctgcta cagaaggggg gtactttttt ttgaagatca aagcgttttt
      541 tttttgtttt tcacagaatt tcatatttgc taatatgaag gcataaaaca gcaacagaga
      601 acaataatgc atacagcaat gagtacacca gggtaacgtt gatattcaaa acggctagat
      661 aatttttttt tttaagtttt agaataaatg caacagaggt caataatcac aaaattttaa
      721 ggttagagca agatcagtca atgactaaac atagttaaca tcttttatag gactatta
//
LOCUS       KCLJ01001928             663 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 215157cal ultra-conserved element locus
            uce-3330, sequence.
ACCESSION   KCLJ01001928
VERSION     KCLJ01001928.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 663)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 663)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..663
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="215157cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>663
                     /note="ultra-conserved element locus uce-3330"
BASE COUNT          229 a          119 c          106 g          209 t
ORIGIN      
        1 tacatgtgag actgctttta ctactaaaga aattcatgct tacactaaat gattattcac
       61 attcacagtg catgtttttg catgatctac ctaactctta gctactttat ttatggactt
      121 taactggtga aataaatgac tcaaaaaaag tatcagctta gaaaactgac aaatatgcag
      181 caaaagatta tggaaacatg cagtggtctt gctaaaatta acaacagtaa atagaaaaaa
      241 tgtaactgat gtattaccag tttgtgccat aaatttagca gcatcagctt gttcctgagg
      301 gacccttttc tcatgaacag atcgaggtcg ctgactttta attgtatgat ctcccatcat
      361 tccaaattct aaagacagaa taaaggttta tgaaagcttg tgtgtagaca tttctcaaaa
      421 gtcacatact gtctcatgca atatgttcct aaacatacct ggaagttgct ggcaagagtc
      481 aggcaagtga tcatggcagt taacatcaac ttaactttgc tacactcagc tttcaataaa
      541 tacttaaatt tatgtctgca gattttccaa tatgatttta ttttatgaac caacattcaa
      601 tgtagtgaca cattctataa atcagctgta tgacacggga caaaaacagt tattcaaatg
      661 cag
//
LOCUS       KCLJ01001929             760 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 215265cal ultra-conserved element locus
            uce-3436, sequence.
ACCESSION   KCLJ01001929
VERSION     KCLJ01001929.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 760)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 760)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..760
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="215265cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>760
                     /note="ultra-conserved element locus uce-3436"
BASE COUNT          231 a          134 c          159 g          236 t
ORIGIN      
        1 tctgtgggtt attaagagca gctcgtctgc ttagatctgt tagaaaaaga ccataagagt
       61 tgctgcaatg agataaagac ggattggcca cttttaagtc atatttcctt tcttgtgtaa
      121 atccagctat gacttttatc attacttttg gagagtcatc ggggaggatg ttgttttttg
      181 gtttgcattg gtaccaatat agaggctctg ggatgctttg ggaatatcat gtcaccatat
      241 ttgagtatgg gcactggaca atagcaagta ccaataactg ccctgtttga tcttctgcag
      301 ttctcagtct ttctaacagc aataatcagg cagaaggatg aaaagactga ttttcaggga
      361 attagcatga taagcaagaa cacaaaatca atcccaatcc ttgtgaggcc gcctctgatt
      421 gctttgaact gtcaaaaaat ggcagaatca aatcgaaagt gcttgaggtt acgggagtga
      481 tttgttcaag aagagatcgc tagagcaatt gacacagctc ttgagacaat aattgggtta
      541 tcaaagagaa aacagttcaa gtaccacagg ggtgaaggct tatttgcatt ggattttcat
      601 acagcccagc acacctcgat ttgaaagcct ccatttttat atacttgaag attaaaaaga
      661 ctcaaaattg catcattatc atttggaact ttggttctta gcacattact ttttatttaa
      721 ccagcaaaac tttgaaaccc tgctttttat gaagtacgtt
//
LOCUS       KCLJ01001930             654 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 215376cal ultra-conserved element locus
            uce-3547, sequence.
ACCESSION   KCLJ01001930
VERSION     KCLJ01001930.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 654)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 654)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..654
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="215376cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>654
                     /note="ultra-conserved element locus uce-3547"
BASE COUNT          211 a          137 c          123 g          183 t
ORIGIN      
        1 ggttttccaa atgccaggtt gaaaacaagc tcccatcaaa actgagtggc tctgtcaagt
       61 tcaaaaggtg aaataaatga atctttacac attataagaa caaaatcaac attcttctgt
      121 ggcataaagt gcctgaaaaa ctagcaagta aaagcaggtg tgatgtgctc cctgtcagct
      181 aacgacactg ataagcttgc catgcctggt tctgcttcat ttcaaacaga ctgctgaaaa
      241 aaagggggaa aagccagagc agaaataatt gctggagctt cgagttagct gagagagcct
      301 gcaggctaag atcaacgcga ctgatttcat cctcttcctt ttatttctat aaccttaaac
      361 gttctgctat tataaaagtc atcatgtcag ctttccccca agccttagca gcggcctatt
      421 ttaaaattgt atcaattggt aaagctcctg gctggagtat tttcatcttg atttatgggt
      481 tttgagcttt aaagatgaag aaaactccac tgacctgatc cgagcatgca tgtgcattgt
      541 cccacacata tgtttataat cagaccctac agaaacaaca cataaagctt taaaattcca
      601 aaggcagcaa attgcaagtg aacactgttt atcctgtatt tgtctccaag aaaa
//
LOCUS       KCLJ01001931             260 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 215490cal ultra-conserved element locus
            uce-6235, sequence.
ACCESSION   KCLJ01001931
VERSION     KCLJ01001931.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 260)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 260)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..260
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="215490cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>260
                     /note="ultra-conserved element locus uce-6235"
BASE COUNT           66 a           65 c           55 g           74 t
ORIGIN      
        1 gaagcgtttg ggtgctgtcc tggatatctc ttgttctcct cctaacattt tcttctccca
       61 tttcatttct acaggcaagt ttataccgag gtggctacag ccgatttgcc ccctactgaa
      121 gtgacgtgag ccccctgcaa gcgggacagc ccccccagtt catgaggcct ggctattgca
      181 atatttacta gtagaggaac tctatagcaa gtcgaggagg aaaaacaaaa gagaaaatac
      241 ttttttatac ctcactatgt
//
LOCUS       KCLJ01001932             678 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 215590cal ultra-conserved element locus
            uce-5287, sequence.
ACCESSION   KCLJ01001932
VERSION     KCLJ01001932.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 678)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 678)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..678
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="215590cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>678
                     /note="ultra-conserved element locus uce-5287"
BASE COUNT          205 a          122 c          122 g          229 t
ORIGIN      
        1 aagttgcctg tattctttgg ctattcttat agtgcaaaat tattcactcc ctttctggtt
       61 gaaaagctgg aatgaaatga tctttcagaa cagtgtacct ttttatgttt ccagtattaa
      121 ctaaccactc agggtgtgat ctttttgaaa tcagaggatt ttctattata caggagtgga
      181 aatatttagc ttctctctcc tctctcagaa aacaaaccac aaaaagaaat gttttacaca
      241 gaatttatac atgataagaa attcattcca caagtggagt aagacctttt aaagaccttt
      301 atctacctca cagaataaat ctgatatgcc ttacaaacca ttatgtgatc tcttcctctc
      361 attgcatgca gatgcagctc ccaagtgcta acaccgtaat ttccattcca gtgatgaaat
      421 tgggtgtgga aggggagaag tttgttctaa tgcacttata tatgattaca tactggattg
      481 taaaaattta acattttttg cttcttctaa taagcttttc aaagcgtaat aaatctgagt
      541 atcttaaaac atctgtttgc tctggaagat cagtcagtag ggttgggcat cctgctggtg
      601 gggctgctga gactgtttaa agagcctggt tgatacttgc agtgcatatt acaaaagagc
      661 tattcttcag aaaacttt
//
LOCUS       KCLJ01001933             427 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 215699cal ultra-conserved element locus
            uce-1234, sequence.
ACCESSION   KCLJ01001933
VERSION     KCLJ01001933.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 427)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 427)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..427
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="215699cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>427
                     /note="ultra-conserved element locus uce-1234"
BASE COUNT          150 a           68 c           67 g          142 t
ORIGIN      
        1 tccaccagtg cctgtgttct tgttgagaaa taatgagata ccataataaa ctgtagaaga
       61 tgtatgtcag atggttcttc aataacatta gcagctgatg tatgggatat tgaaggaaga
      121 ttaagttgtt aatgcatatt agtatattct taatttcctt ttaattgaaa aagacatatt
      181 gactttaatt aaaaccattt cacaggaact gtcaattagc acatgtcaaa ctagttaatt
      241 cagaacagaa ttcttttaat tagggtctgc tttcctttaa ctgtggggcc aatgaaatca
      301 gcctttcctt atcaagaatt tacatatctc aaagaaatac aatacaaatc tctaaaaact
      361 cttatctatt attagaagcc catatggata acattaaaat gatggtgctg acatagttca
      421 tgccaca
//
LOCUS       KCLJ01001934             543 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 215806cal ultra-conserved element locus
            uce-5116, sequence.
ACCESSION   KCLJ01001934
VERSION     KCLJ01001934.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 543)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 543)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..543
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="215806cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>543
                     /note="ultra-conserved element locus uce-5116"
BASE COUNT          172 a          112 c          128 g          131 t
ORIGIN      
        1 tttcctgaag attataggaa aaattaaaaa atgtgaaccc tcctaagact ctacaaataa
       61 ataacattga agtcccaccc ctgtacatgg gaagcagaag taaatcacat atagacagat
      121 ttctggcaaa agttagtaat aacttgttag tgaaatagcg agtgaatagt aaaatctttg
      181 gacataaatg gagctccaaa gtgagtctca gccttcggtg gccaaaaata aaccagttct
      241 tggctgaaag acataagtgt tattgtgaaa ttgatatccc tccttggctt attcccagac
      301 aatatgttgc ctttctgggg gctgatcaat gtgatggatg tgatgtgtga aatccaggag
      361 ggagctcccc tttaatcaaa cccactgtcc tccgctgata ggcagctgtg gactaacatg
      421 ttcttctgcc ttgctgcctc tggctcccct cagaaatcag tacggccgca tcaaaaagga
      481 cgagagggga gagaaaaacg aaccgcagca caggacatga gagggcagca gtcgagcggg
      541 gga
//
LOCUS       KCLJ01001935             437 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 215915cal ultra-conserved element locus
            uce-4970, sequence.
ACCESSION   KCLJ01001935
VERSION     KCLJ01001935.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 437)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 437)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..437
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="215915cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>437
                     /note="ultra-conserved element locus uce-4970"
BASE COUNT          141 a           77 c           78 g          141 t
ORIGIN      
        1 tactcctgtg cacttctaaa acagagaaaa taagcagaaa ggtgaataaa tatgaaggtt
       61 agaattaagg gtaggatttt atgtcattta tacaatggtc accatttctt tttacccagc
      121 aagactgctt agataaggga atattatttg gcactagctc cagtgttatt tgtgataatg
      181 aacacaaacc ccatctgtaa tgacaacatg atgtttcttt ctgtagaatt tctttcctac
      241 atttgaatca aacattgatg aaagctctgc tgccagcagc tgttcagaga caatttaatt
      301 ccagctgtga taattcaccg tgtcagacat tggctgttat atgttgatac aacagttctc
      361 cagatttgca tttttatcaa aaggaacaaa tgttttgaac atttcagtac agatggcatt
      421 taaccatgca cacaggt
//
LOCUS       KCLJ01001936             584 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 216026cal ultra-conserved element locus
            uce-4500, sequence.
ACCESSION   KCLJ01001936
VERSION     KCLJ01001936.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 584)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 584)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..584
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="216026cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>584
                     /note="ultra-conserved element locus uce-4500"
BASE COUNT          186 a           91 c          108 g          199 t
ORIGIN      
        1 gtgcagttgc tgttatgaaa agatatcctt gtggagctaa aatcagattg tcactgattt
       61 aaaaacctga tattgctgtc catcacacta gaacgtgcta atggttcctg taaagttggt
      121 aatccctgtg cttatgcagt gttatgtagt aatgctcctg accagcataa gcatggagat
      181 ttggttatta tgtagaagag ttataataag aaatatgact gcaaaagcaa agcagtcagt
      241 tgaaattggt ctataattaa atgcttagaa aattctgtgc ttagctcatt ttaaaatcaa
      301 gtgcttcttt gtagcaattt cctttcttta attacaattt cctgtctagt ttgacattta
      361 caatgcaatc ttgggggaca tgtttgtgat ttattattct tgctcctatc aggatatcac
      421 tcggcagaaa tgagtttata aaataagagc tcaaattatt atggcctttg accaataaag
      481 ctggctcata atttcaggcc tgagaaaaga ttaacatttt tgacaatcaa atgcagaatt
      541 accaatgggg gacaattttg aaaactattt caattttctg aaac
//
LOCUS       KCLJ01001937             846 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 216136cal ultra-conserved element locus
            uce-1110, sequence.
ACCESSION   KCLJ01001937
VERSION     KCLJ01001937.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 846)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 846)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..846
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="216136cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>846
                     /note="ultra-conserved element locus uce-1110"
BASE COUNT          294 a          147 c          140 g          265 t
ORIGIN      
        1 ttgctcaaca atataaataa ttccgcgtcc tttctgacat aaagtagtat gtttaaagta
       61 aggtgtctta gtgagatttt cactttaaat agaataaggg ttaaatgata acttgactta
      121 tcttttaaat gacaaaaaat aaagaaattg caagaccttt tcacacatta gatatgtatt
      181 gtcatttatc atctagatat caggctagca gtgcgaagta ataaaacata tcatcgaaaa
      241 atgtgctata ggtctgaatc actctttcat tccacctccc agctaactgt agtattaaat
      301 caaacaagca gaacatttcc ttaggcagcc attgcctttt aatttcctga agaaccttaa
      361 aatatcattc attacaagta ctacacatat ttggttttta aaagtctcat aaatcaatag
      421 caggctgact gtaataatta ttacaagtta gtgcataatt ttcgtgctga aggctgcatg
      481 cagaacttta gcatatgcaa acgaggcaat tcaaactgtg tatagatatt aatatgaaga
      541 agcaggtaac gaggtgcagg ctatgaatta tgcatcaaga gcggctgatc ttcaatgagg
      601 aaaatgaatt cagcatgtaa tctaattagt gatggaagtc tattacatct aactgcaaaa
      661 gcaaccgtcc ttgaaacaaa tttatttaca gtccatgtta ccacttgaaa caactttgaa
      721 atgatgtgta agacaacagc ttaattgtaa aaattttttt gtttgtttgt ttcagttcta
      781 gacctggaag gcctcctaag aggactcaaa gtgtcacctc cccagagaat tctcatatca
      841 tgccac
//
LOCUS       KCLJ01001938             580 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 216250cal ultra-conserved element locus
            uce-3596, sequence.
ACCESSION   KCLJ01001938
VERSION     KCLJ01001938.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 580)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 580)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..580
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="216250cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>580
                     /note="ultra-conserved element locus uce-3596"
BASE COUNT          176 a          117 c          122 g          165 t
ORIGIN      
        1 ctgtctgagt gctcacattt tgcgttgtaa aatcacacag cgtgtatccc aacaccatcc
       61 ccagcagcaa caacagaaaa accctgggac ccacagaaaa tgtatctgtg ggaccaaaag
      121 atatctcagg atcccaggat cctgctttct gcggtcccag gttgcattcc ctagttaagc
      181 accatcaata tcaatactta atggtattct ctaagctcag gcagtgaaga aaatagggtt
      241 gttatctatc aaagcacatt ttagtttttg acaagtaaaa agcagcatgg ggaatgcagt
      301 aagtctgaaa tgaaagccta aaagaaaact catataacat ctggtgtcat ttatcccctg
      361 ttggccttcc atagtgtgat atgatgagct tgttctgatt taagatcaga tgatttggtt
      421 tgaaagaggg gagtggggga tgcaggcagt ctggcagcaa attgggatac aaaatctgct
      481 caaataattg gaaacacgac agattttcct taactgatgc cagtggcatc ttagtttatc
      541 catctctctc agctgaattt gttaagtgca ttatcttatt
//
LOCUS       KCLJ01001939             537 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 216361cal ultra-conserved element locus
            uce-1040, sequence.
ACCESSION   KCLJ01001939
VERSION     KCLJ01001939.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 537)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 537)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..537
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="216361cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>537
                     /note="ultra-conserved element locus uce-1040"
BASE COUNT          156 a          102 c          124 g          155 t
ORIGIN      
        1 ttattgatta ttggaaatgt tacatcccgg ggaggaaaat gtcattgctt taaataccag
       61 cattaacagt tgggcaccca ggcgtttaaa caatagagat ggggaaatac atggaatttt
      121 agagtggttt gtgtgtcgat tcaaccgagc aggagcttag cgagcacatc tcgtactgga
      181 cttttttact ggaacagtga aatatataat gaaatccaac aaggaaactg gaaaaacagc
      241 caaattggtg cagcaaagtg gttaatagga tcattagcct cctcgctgta tttttttgga
      301 cattgtgtgc ctgtaccgta gtcctcgaga gcagattgca ggaacaggct gacagttacc
      361 cgctaactca gcagtgctgg gtgcaaactg ccatcttcct gtggatttac agctgccact
      421 tctgctactt caattagttc tatagcacac agatgttgct taaatgttgc tgctaatgat
      481 actgcaataa gcgtaagatt catgccatat tttgaggcac gtaaatttct caagtgg
//
LOCUS       KCLJ01001940             555 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 216467cal ultra-conserved element locus
            uce-300, sequence.
ACCESSION   KCLJ01001940
VERSION     KCLJ01001940.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 555)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 555)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..555
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="216467cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>555
                     /note="ultra-conserved element locus uce-300"
BASE COUNT          176 a          114 c          105 g          160 t
ORIGIN      
        1 atgatctgga agttagctgg aattcagaga caaatactaa acatatatct acctacctgt
       61 taaaaaagaa gaaaaaaaat gcaatgaaaa tttatgacct taacattcct tcagggtcaa
      121 gcaatttatc aaattctctc actttctggt ttcaattaca cagctattgt ggaaggaact
      181 tattttagca ggttcatttg cctcagtagg gaatacagga ctttggccta atgcttcacc
      241 tttagtgcag gccatttgag ccttagaaca aataccaatc atcactctta ggggaaaaaa
      301 aaaaaaaaaa aatctgcatc ggtatggcct attggaatgg ggtttctgtc aaggtaaacg
      361 gttgtcggca atgactgtgg tagagtggcg ataaatccca ttttattgct gaaaaattcc
      421 agcttctctc catgcctgac agctccccac attctcgtac ccatttgggc aatttctgta
      481 ctatgtccat ctggttctta ttacctctca acctgccagt gtctgatcca gcaggtcaaa
      541 aacaggggaa agaaa
//
LOCUS       KCLJ01001941             748 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 216574cal ultra-conserved element locus
            uce-2248, sequence.
ACCESSION   KCLJ01001941
VERSION     KCLJ01001941.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 748)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 748)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..748
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="216574cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>748
                     /note="ultra-conserved element locus uce-2248"
BASE COUNT          247 a          113 c          148 g          240 t
ORIGIN      
        1 ttttcataag ttggacttcc ttccaggcta attaaccact aaacatttta caagcaatcc
       61 aagtgcggaa gcagtaaaag atgaattgca cttatgaagt aattgacaaa gggtatattg
      121 ggccttttaa gcaatgatat tgtgcatctt aatacaggaa gaaaggatcc ctggtactgc
      181 agggtcatta gttaattctc agaactctgc acaagataat aatggctgaa ggccagaatg
      241 aacctgcctc gattagggtg gggaacctta ctagagaaaa cacttaatgt ttgtgtcttg
      301 gtattatccg tgttatctta gattaattcc ctggctattt tcttttcttt tgacagcaaa
      361 gtcagaactg acaaaccaag gcagttctca aggaaattca attactgaaa tgtctgacag
      421 cttgctttgc tgcttctaac taaagttttg aaagttacat gctgcatgta taatatagtt
      481 ttcactacaa aggaatagat ttgcattttc tagggggaaa atcattttca ggctgtagga
      541 gtttaatgat aaaagataaa aaatgaaatg ctgaagtttg tattttgcaa aaaaatgaag
      601 tgagttgagt ggctgccaca tgaaactagg aaaatattgt gttttcttag aattcacttt
      661 aaatgaggga atgccagtct atttgaatag tgcctgcata tataattttc taattattcc
      721 atatgatgca agatgaaaat gttcataa
//
LOCUS       KCLJ01001942             629 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 216683cal ultra-conserved element locus
            uce-7950, sequence.
ACCESSION   KCLJ01001942
VERSION     KCLJ01001942.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 629)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 629)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..629
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="216683cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>629
                     /note="ultra-conserved element locus uce-7950"
BASE COUNT          180 a           94 c          118 g          237 t
ORIGIN      
        1 tactgttttc cataaatgat tgtgctttca gaggggaact gatgtagtta tactgctgtt
       61 tgattgtgaa tatggaattt taaagcattt ttgcagctta atagtgcagt tgaaaaagaa
      121 tgaatactag ttttgttgtt gcatgattgt tctaaagttg aaaagttaaa agaagagatt
      181 gtatttgctt gctttttttt ttttctccaa aagccttttg taaccatttt atgtattctg
      241 ttttataaca agtggataga ctttacagtt atgtgctgtg cggcctgtca atcagttcag
      301 tctgacagct gtcaatcact gacacgcaaa tattatggga ttccctagtg aggaaagcat
      361 tggtatctct gtgtggtgac tttagcctcc cgcagttccg gtactttaca tttttttagt
      421 ttttttcctt gtgaagtgat gagacttgta cctgcaatgt gttaactgcc aaaaaaaaga
      481 cttctaaata cacctgaaat gttttcagcc ttattttcct ttgattttga aagtgcttaa
      541 aacataaaag aaaatttaac ctgaagcttt ctcagtctga aaatctttac ttagggataa
      601 tcaactttac agaaatcttt aatgtaagg
//
LOCUS       KCLJ01001943             241 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 216793cal ultra-conserved element locus
            uce-4600, sequence.
ACCESSION   KCLJ01001943
VERSION     KCLJ01001943.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 241)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 241)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..241
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="216793cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>241
                     /note="ultra-conserved element locus uce-4600"
BASE COUNT           48 a           70 c           52 g           71 t
ORIGIN      
        1 atagcggctt gcttgtggtt gctgatccac cctccgaaac caacgattcg cccttgctga
       61 ccaatatccc ggacccgctc ttgggtgact gcctccgtac ccaacttgtg gttctgtggt
      121 tgtttatgag gcccaaagaa gtgtttcaca caacccaaat tacaaattta actgttcccc
      181 tttccaggac ctgcctccat tggttttgca tcacatgact ggggtgatgt cgactttctg
      241 c
//
LOCUS       KCLJ01001944             643 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 216904cal ultra-conserved element locus
            uce-5208, sequence.
ACCESSION   KCLJ01001944
VERSION     KCLJ01001944.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 643)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 643)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..643
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="216904cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>643
                     /note="ultra-conserved element locus uce-5208"
BASE COUNT          222 a           93 c          120 g          208 t
ORIGIN      
        1 cactgaagtt caaaaatttg tgtcattatg aaaaatgagt tattgtgaca tattagagga
       61 gcattatctc gttgttttaa aggagaggag gtacttgagt cttatttaat atttatttag
      121 atctaaaaat atattactag acttttctca ttgttttcaa catgacaaag ttacataaga
      181 gaatcccctt gtacttaaag aaaaatgcaa ttattttcca ttctgaatct tcaggctgct
      241 gttttagaaa atcatatctg attatttgct cagcagaaga ttattgagtt gatttagctg
      301 tgattttact taacaaagct tcaactgaat tcctactgtg gagtccaaaa aaggtagaga
      361 gatataaatg atacattcaa actgtgattt ttgtgaacag ggccatcaat gcacccctcg
      421 gagctaatag cggagatgag aaacagtggg tttgcactga aacaaaatgt actggggaga
      481 aacttgaccg caaatgatcc atcacaggta atttttacca gtaagctgaa aatgtctgta
      541 aatctaaatg tgattgcttg tgaattgtta cttaatgttt tcaaatatgc atatccatag
      601 gaaagctgaa gagctatacc agtagaaaaa tgtcagaaaa ctt
//
LOCUS       KCLJ01001945             444 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 217013cal ultra-conserved element locus
            uce-6734, sequence.
ACCESSION   KCLJ01001945
VERSION     KCLJ01001945.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 444)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 444)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..444
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="217013cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>444
                     /note="ultra-conserved element locus uce-6734"
BASE COUNT           89 a          103 c          107 g          145 t
ORIGIN      
        1 gggtgtgaag ccccggcccc tcctccgcag ccccgggctc gcccgccctg ctcgggagtg
       61 tggtccctgc cgggagccgc cgcgcctggc gcacagaggg aagcgttgat gcatcgctgt
      121 ggaaattcat tgtgtgactt tctgggtatt tactgagttt cagaccgaga tgcagctctt
      181 gaaagcttta tgggcactag caggagcagc gatctgctgt tttcttatat ttgtcatcca
      241 ctcacagttt cttaaagaag gtaattgtat gtgcatgtct acatatcctg ttctttaata
      301 ctaagatctt tacgaggtgc cttaattatt tttactgttt ccagtatgtt ctatttacag
      361 cagtggttcc acgctatttt taaagccttc tcattttgtt gctttaggta ataggtaggc
      421 ttagacttac atctttgcta aatg
//
LOCUS       KCLJ01001946             284 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 217124cal ultra-conserved element locus
            uce-4030, sequence.
ACCESSION   KCLJ01001946
VERSION     KCLJ01001946.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 284)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 284)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..284
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="217124cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>284
                     /note="ultra-conserved element locus uce-4030"
BASE COUNT           89 a           60 c           56 g           79 t
ORIGIN      
        1 aaaagtgacc catcagggtc caggtcacag gcatctgcca atttacccac ctaaatgata
       61 aatttacaca ttggttgaaa gcaaatctgt tgttgctgac cgggatctgt tgttaatagg
      121 tatgacaaag cagtaatagc atcccggcat tttttgtatt tccacttcaa acagcaaatc
      181 cgcctgaatt tacctaatac ttcaataatc caattataac actttaccag cagaaatcat
      241 cggtgcataa gcctgggagt cagttaaatg agggctgtgt ggag
//
LOCUS       KCLJ01001947             724 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 217229cal ultra-conserved element locus
            uce-7785, sequence.
ACCESSION   KCLJ01001947
VERSION     KCLJ01001947.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 724)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 724)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..724
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="217229cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>724
                     /note="ultra-conserved element locus uce-7785"
BASE COUNT          197 a          163 c          120 g          244 t
ORIGIN      
        1 caccagatct tttgcatttt gcatggtgct gtagctgaaa aacattcctt tgttaatgta
       61 acctcagtgc tcaagccctc agttttcctg tagctcaggc aacaaaccca gaacacacac
      121 tgatttacca tggttctaat cagcatttcg cacatggaaa actcaccatg tgtttcagaa
      181 ccctttgaca ctcatctctt tctaatacaa gtgcctgttt ctccctctgc tggtttcaga
      241 ataaacgcct tgtcaaaaaa agaattagat tttgacagct tttttcctat ggttaattga
      301 ggtgatagat acacttgaca tttatctcgg cgcagaaaag acgattaaga catatttttc
      361 tccgtgcatt ctctgtattg gaggtcactt tccagggtct ttttaatatg cctgtgcaat
      421 taatagtggt gataattccg ctccatatca cagcctcttt aaagttctct ttcaaactga
      481 cagataaaac tctctcttct gtacacagga cttgaattag actaatcttt ttcaagtttg
      541 ccccgcaggc cttcttcaca gtcctgaaaa ttaatactgt ctgaaaaaca caaaggatat
      601 cgtgacttag ttcaaagcaa atgtcatatt tcagtttttt aattattccc actgaatttt
      661 tgagggcgtc cccctgaatt gttacttcgg aatgcgattt gaacgttcca cttgttaagt
      721 gtcc
//
LOCUS       KCLJ01001948             724 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 217341cal ultra-conserved element locus
            uce-2270, sequence.
ACCESSION   KCLJ01001948
VERSION     KCLJ01001948.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 724)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 724)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..724
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="217341cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>724
                     /note="ultra-conserved element locus uce-2270"
BASE COUNT          214 a          160 c          191 g          159 t
ORIGIN      
        1 gaggacccag tggaatctca gcaaagaacc attgctggaa aaggcagcac tgtttttcct
       61 gaaaggcatc aagcaaggca attaaccttc tttcccagaa acaagggaag tagagggaat
      121 tgctcccttg ttcatgaggt attagctgac ttttggtgaa acagcttcta gtcccattgc
      181 tgttctcatg ggaagaagag atccatggca gcagtgaaat tgaaattaaa gaaaagaaaa
      241 tacttacatg gcacagacag gcatgtacat gggacacaca cactgtgcat ttacctaatg
      301 atccatgaga agctgatgtc cccaggaaag tgttttctga ctggcttaag tgtccctggg
      361 gctgatggag gaaatgcgat gagaggctga ccggtggaga aggagaggcg gagtgaaagg
      421 aggcagagct tccaagggac ccggggatat ttacaggagc agaactttgc agcaaactcc
      481 cacctggaca aagaacacac agagaggatg gctatgtatg accatgaggt gtggacacag
      541 ttcagagcag gaggtgtcag gttccctttc tcctccctga gcccctcggg attccctcca
      601 cttctcctga ggttaagagg agcactgaag ctgccatccc atgacccaca taggttaaga
      661 ccctccacaa ttcaatagat tactctttca gtggccaagg aacaaaaggt tttctgagca
      721 gagc
//
LOCUS       KCLJ01001949             343 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 217451cal ultra-conserved element locus
            uce-3332, sequence.
ACCESSION   KCLJ01001949
VERSION     KCLJ01001949.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 343)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 343)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..343
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="217451cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>343
                     /note="ultra-conserved element locus uce-3332"
BASE COUNT          132 a           67 c           48 g           96 t
ORIGIN      
        1 aaccaggaag tagatgtgat gtttttcact tcacacataa cagaaccggt gccccacttt
       61 aaactaatta ctttaaacct tttggtccaa atacataaaa taagcagtat ttacagcatt
      121 ttattttgta aatgcaatgc tttaaaacac gttataaagc acctcagtaa aaatattcta
      181 cagataaaag tattgaagta gtaggaaaac cctagccata tcacagctca ctagtagagt
      241 cataacatgg attcaccaat acctcagttt acaattatta caaagaatcc atggagaaac
      301 ttacttatac cactgtgtaa ggatcaacta gaactgcaga caa
//
LOCUS       KCLJ01001950             330 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 217555cal ultra-conserved element locus
            uce-1782, sequence.
ACCESSION   KCLJ01001950
VERSION     KCLJ01001950.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 330)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 330)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..330
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="217555cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>330
                     /note="ultra-conserved element locus uce-1782"
BASE COUNT          104 a           63 c           54 g          109 t
ORIGIN      
        1 aaaaaagttg aaaattaatc caaagctaaa tcagtgacat gattgtattc cgattacgtt
       61 ccacttaaat gcatatgttt acaatatcct taataattat taaacatagt aaaatacttc
      121 caaacttggc tcatggcatc gttgtacttc tagtagttat ctgaagccct gtcaatatgc
      181 cacttcctcc tcccccatct tttaacagaa gcagcctcca gtgaaataat ccaagctgtg
      241 ttcaagaagt tggcaagtgg gtccaattaa atgtggtttt agtgtattct ggcatttgca
      301 tatctagttt gccaagaagt aatgttttag
//
LOCUS       KCLJ01001951             605 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 217665cal ultra-conserved element locus
            uce-6485, sequence.
ACCESSION   KCLJ01001951
VERSION     KCLJ01001951.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 605)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 605)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..605
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="217665cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>605
                     /note="ultra-conserved element locus uce-6485"
BASE COUNT          194 a          114 c           82 g          215 t
ORIGIN      
        1 tcgaagtgaa ttatgattta ctggataaca gatacagaaa aatttcacta ccactaccta
       61 taaaactgca ttggtttttt atcaagtagc tctgttttag cccatctagt tgatgaacat
      121 tcttctcaac tagcaaatat aaatgactta tggggataat atttcaatat atgatgacat
      181 tgctatacct cggattcttt taagatctgg gttattaaat attaaatatc aaagctgtaa
      241 attattgtag cagctttata caactaaatt aaattcaaac aaaacctaat ttccttaatc
      301 attgactgta atcctccagg aacatatgct attaactcag ctacaaatgg catagaaatt
      361 gtatgacttc aaattatttt atatcaaatt ctaatccagg gcagagtctt cagtaaatct
      421 cctgcaggga ttttaatgct tctgcaatca tactggctct ttactagaga gctaatcttt
      481 ttagactctg tcatccttta tccatttcct tcacacactt actgagctat agctagtacc
      541 ttctatcaca tatattttga aagatttggc tttcccctct tgcatttgat cagcaatagt
      601 taggc
//
LOCUS       KCLJ01001952             572 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 217776cal ultra-conserved element locus
            uce-7682, sequence.
ACCESSION   KCLJ01001952
VERSION     KCLJ01001952.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 572)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 572)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..572
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="217776cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>572
                     /note="ultra-conserved element locus uce-7682"
BASE COUNT          189 a           93 c          103 g          187 t
ORIGIN      
        1 ataattaagc ccgggcaact aagaacacat aattaaagtg cttttaagca atgctttaac
       61 ttgtgctaaa cagcagtctc atttctttct gctctcggcc gatttgtcaa agtactatta
      121 agaattttta gttataaaaa atggagtgaa cctttatttt tcttcctcta atttattacg
      181 gttgattacg cagctggaat gggaaggtag ctgctgtttg tagttaaata actcctcaca
      241 atttcttaaa gaaatgatct tcaaagcttt aatgggtcag tggctcaagt acaaaggaaa
      301 gattgatttt catactccca ctctttgttc ccaaagttta aaacagacac gttctggtaa
      361 attagtttgt ctatgttatt aatggaagaa cttattaaac tcccataaat acatggtggt
      421 atcttactta aaacacagaa tgcatttgct ttgcacattt aaaagtaaac aggggtgtaa
      481 tattttcatt tgatttcaga aatgcctcga aagtcagaaa gcaggagagc tcagaataca
      541 ttaggtatgc gtaatgatga atggcacaaa ga
//
LOCUS       KCLJ01001953             516 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 217882cal ultra-conserved element locus
            uce-3354, sequence.
ACCESSION   KCLJ01001953
VERSION     KCLJ01001953.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 516)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 516)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..516
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="217882cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>516
                     /note="ultra-conserved element locus uce-3354"
BASE COUNT          181 a           93 c          110 g          132 t
ORIGIN      
        1 ttccaaggag aatttagtga cagcaattat tttaagccct tttataatgc caacaacatg
       61 aacacaggct cacatgagtg aaggtcactg aaagcagtca gtgtggacaa gcagacattt
      121 ctcgaaagta aattaaagag aaagaaacta ttttggttac ctttctcaca tttctttttg
      181 gaagctgacg aaggaggagg aatcataggt aatttcatca actcagcacg atttgactca
      241 ttcagtaggt agtgggactt ataggcatag gaactgaaca ggggatctga atggtcctgc
      301 actaccagcc ctatacgaaa caaacagaaa gagatgagtt gcaatgaaac tacccatgat
      361 tccatgaagg atatacccaa tgaacacctc taatgcgtta tgtgggaatg aaagtgtctg
      421 taacaaagag gttgtgctgg agagactcaa aaaaatcttg caatgaactt ctaagtggaa
      481 tttcaattgt tttacccttc aagcacaaga aaagca
//
LOCUS       KCLJ01001954             480 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 217988cal ultra-conserved element locus
            uce-6254, sequence.
ACCESSION   KCLJ01001954
VERSION     KCLJ01001954.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 480)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 480)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..480
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="217988cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>480
                     /note="ultra-conserved element locus uce-6254"
BASE COUNT          145 a          106 c           91 g          138 t
ORIGIN      
        1 ccccatggat attgcccaaa ttattctcca caggaacaca attacggatc ttagatgcag
       61 aactttatcc acagagaata taaaattttt gcacaatcaa aagaagatgc caattctcta
      121 ttagaaagga acaattaaaa ctagataatg actacgaaca gctctgacct gctgagagcc
      181 tgaaggcttt gcttcactca ggactcttct gactgcaggt cagccctacg caaacaaagc
      241 cttaacagaa atgttacgga ggaaataata gccatttcca atgataatac acaattttag
      301 cacctacgct tggctgattt aggtggtcgg ctaacatgtc aaacagcctg ccttagttag
      361 gtgagccttt aatgggtaac tggcagactc tggcagcctt atttctgttt tagatttggt
      421 ttgtcattgg atatccatta cctgccattc atctttgatc tctttggaca ggcctgatca
//
LOCUS       KCLJ01001955             630 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 218194cal ultra-conserved element locus
            uce-1614, sequence.
ACCESSION   KCLJ01001955
VERSION     KCLJ01001955.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 630)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 630)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..630
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="218194cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>630
                     /note="ultra-conserved element locus uce-1614"
BASE COUNT          195 a          143 c          108 g          184 t
ORIGIN      
        1 gaaacttcag taagtgttcc ctggggcaaa gctcacacaa tgtctcctgg tactaaacct
       61 tctgtgaatc aagcttttag atacttgcaa cgctctggca tcaagacgtt catacaactc
      121 tgaattattt attcatcagc cttcgtgcaa cttcccaaac accaatggag accaagacga
      181 tttcagctat ttgatgttac atcttctcaa gtggcagaag aggctataaa gcaccccatt
      241 gcttaagcct gccatctcag ttccattagc agtaaagacc tctctattca aactgctaag
      301 taaatcctcc gagagccggg ggactgtttc atgcttgaaa gcaactgtta agaatttgac
      361 aacaaccaaa ctgttcctat ttaatccttc tcccaaggta aaaagaatta taggtaaaca
      421 tatgccttca ttatttgctt tgctgcattt caatactcaa tcccacacaa aattgccagc
      481 caaggattta atgcaatctc ttctgtattt cagagctatt gccttaacag aatgggctta
      541 ataagggctg tagagttgga tggcaaacaa ctctattttc tataacacac actagagatt
      601 ttgcagaggt aactttaata atgcaatgag
//
LOCUS       KCLJ01001956             691 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 218304cal ultra-conserved element locus
            uce-3882, sequence.
ACCESSION   KCLJ01001956
VERSION     KCLJ01001956.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 691)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 691)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..691
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="218304cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>691
                     /note="ultra-conserved element locus uce-3882"
BASE COUNT          192 a          135 c          177 g          187 t
ORIGIN      
        1 ggagccaaag gcatgatgac tttaggatat gaggcgtgtc atttaaaacg ctgtgtgtct
       61 ctgtcaagag gaaatattac actaggcttt aaaccaggaa aggtcatagg ttatgtgttt
      121 tcagtgagct gtaactgatg gtctgatctg cttagaggta ggattaacct ccctctctct
      181 cagaaaggac ttgcagagaa ttgtttgctt gggtttctaa tcttatttta ccccaaatgc
      241 catgtgccct tattggtggc ttcttgtggt agtggaatca gtgaaaagct ggtagatcac
      301 acaagaagcc tctgaatgaa ggcagaattg aaactgggaa ataaagaaaa cagcaggcag
      361 gtcaccctct caggaaaaca acattcattc tcagtcatgc acatcctaac acttttgacg
      421 gcaatttatc atggaagact gggttcaccg caagggctaa cacatgtcat aggttaaatc
      481 agaaaaggca atgctgaaag gaaacttcaa agtccttcat accgtgtttg ttataaagat
      541 aagggtaaac agcacgctgg atgagttttg gcaaaatgct gtgggattgt ttgggagggc
      601 cccatttctg tgccacagcc tgcaggaggc caattctggg ggctgggaac ctgtctcctc
      661 atggtgtggc tgggggaagt tgcctttccc c
//
LOCUS       KCLJ01001957             459 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 218416cal ultra-conserved element locus
            uce-2457, sequence.
ACCESSION   KCLJ01001957
VERSION     KCLJ01001957.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 459)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 459)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..459
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="218416cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>459
                     /note="ultra-conserved element locus uce-2457"
BASE COUNT          144 a          103 c           89 g          123 t
ORIGIN      
        1 ccacggaagt ggattttcca ttactctgta aaaccttagg aggccatgag ttaactgaag
       61 caagcagaac caaaccaaca acgaagcaag gaaggtacca tagctacttt cttgaaaaca
      121 aaaccaatct tttcattcct gccatttgtt agaattcttc ctccaggcaa gctggacagc
      181 tgcactagta ggttttttag tcatgggttg taagccccac ctggctagat ttgtttagca
      241 gacagctggc agaatgaaat taaaagaaca gggacataca aactgcttcc aaaacttttt
      301 ggatgctttc actgagttta tttggtgtac gagattcttc ccttggtccc ccatctttct
      361 gcacccaaaa aaagccaaag cgagaccgca ggctgcatta aacaaaaaag caagggaaat
      421 gccccttctc agcctattta ttttgtagaa tatatgaat
//
LOCUS       KCLJ01001958             725 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 218522cal ultra-conserved element locus
            uce-6196, sequence.
ACCESSION   KCLJ01001958
VERSION     KCLJ01001958.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 725)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 725)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..725
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="218522cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>725
                     /note="ultra-conserved element locus uce-6196"
BASE COUNT          256 a          126 c          115 g          228 t
ORIGIN      
        1 tttacacttt cagcaaaaat gtgaacagta tatttgaata tattaaaaag aattaaaaaa
       61 acatttcaca aaaaacattt gttgccatat gaaagtcttt cagcaataaa tgcccacacc
      121 agtatttaaa cattgttaaa agtataatga tttgtactaa taaattatgc aacaagagag
      181 gtaaacaaaa taaaattaca gtatagctct ccatgttcct ccaccgagca tccacagctc
      241 tcggaagctc cattttagat gactaattaa gaaactgata ttttcagagc aacaaaaata
      301 aaagctttta tttgttcatt tgaatataaa acaggcgtta tcacagatgt acaaagcgta
      361 ctggtggttt aacatacaag aaggttgctg tcctttgcac ataaaaattt ttgtttgaat
      421 ctgtgattgg ctgagtttct ctaaccagtc accacactct atgaaataac gctgctaaca
      481 ttcaactgat aaaagggaca gtcttccctt gggtaaagtg tcaagcagga ttaaatatat
      541 ataataaaca agcaccatga ggaatctgct cctgtttgat tagttttgtg tttaaatgtt
      601 cattgtgtac cctcgtgcat gtgcatcgag ttgattacat ggttttgtct gactccaaaa
      661 gcacaaggtc acaagacaaa cattttatac attctcatga atggtttatc tacagtacag
      721 tttct
//
LOCUS       KCLJ01001959             648 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 218632cal ultra-conserved element locus
            uce-106, sequence.
ACCESSION   KCLJ01001959
VERSION     KCLJ01001959.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 648)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 648)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..648
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="218632cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>648
                     /note="ultra-conserved element locus uce-106"
BASE COUNT          193 a          140 c          166 g          149 t
ORIGIN      
        1 gcagaccttg tgtgaaatga gcactgtctc tttaagctcc aggacctgct acacttaagc
       61 agtctgcagc caaggaaaag ttctgaagtt aaactctcag gagcaaacat tttctacttg
      121 tgaagtaaac tctgttgaaa gacagcagac tatggtccca ccagtaaaaa caggaaagtt
      181 ttcagccagt gacagctctg cctacagaca agaaaaactg tcacagactc actttattaa
      241 accatatgct cattgccctg tgaagaaagc agggtcacta attagttcat tctgtgaaag
      301 aagcccctcc tgatcccgtt gacttttgtc cccctggtta gctcaagcta tttctgtcat
      361 gcaacttgaa aatcactgga gggaagaaga tcgccataac aaccgctgaa atgatcttgt
      421 ggaatgtgtc tagtggcact ggaataacct gaatatgtgc tccagatgtg tcggctgtca
      481 cggaaaaagt aaacacatct gatggacaac gtatgactgg atggcctcac agttgactcc
      541 agagagttgg gatggagggg agggaaagga aaggaggcag ggaaatggag tcaagggcca
      601 ggcaagagtc accctgtgga cctgtgcagc ctggcaggct gagagggg
//
LOCUS       KCLJ01001960             588 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 218737cal ultra-conserved element locus
            uce-3835, sequence.
ACCESSION   KCLJ01001960
VERSION     KCLJ01001960.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 588)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 588)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..588
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="218737cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>588
                     /note="ultra-conserved element locus uce-3835"
BASE COUNT          199 a          108 c           97 g          184 t
ORIGIN      
        1 ttatttctaa aacatatctg cccaaaagtc atgccttcca cacttagtgg gaaccatggg
       61 atttcactat ctcacagaag tgagcagtat gtatttcaat acactttgta gcataataaa
      121 atattctacc gaaattacaa gatctaaaac aattacttta ttgcttctta caacttttta
      181 aaattcaact ccaaggtagt aattggcagg gacaaaatta tgtagcaatt agggcatgac
      241 agcaaaagca aacaagaact gaaaatgggt tcgacacttc tggtaacaag caggtaatta
      301 tcacagcagc ttgaaagggg cataatcaac caaactgaca tcatccctcc cacataataa
      361 aatgtgaaat ccctttacgt gcagtgtagc tcttacacac agctggtaaa tgctgctagt
      421 ctagtctcag agcagctgag gttacatttg ggatggttca agagtggata attttattta
      481 tttatttagg atggtaatag ctattacatg ttttcatcct acagatacta tttttataaa
      541 attctctttt ctgagtataa ctttgttttc aaagttccag aaaaatct
//
LOCUS       KCLJ01001961             581 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 218845cal ultra-conserved element locus
            uce-3795, sequence.
ACCESSION   KCLJ01001961
VERSION     KCLJ01001961.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 581)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 581)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..581
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="218845cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>581
                     /note="ultra-conserved element locus uce-3795"
BASE COUNT          218 a          103 c          106 g          154 t
ORIGIN      
        1 taatctggta gccactgtta gaaaaccaca acagctacag gtcatggaga ccccgaggtc
       61 agtgtctgac atcaaaacgg ggcagattaa tttctactga agggtgctta agcttaaaaa
      121 tatcgaatat acctctgaca agataatttt taaaaggact cgtgataaag aattttatct
      181 ttctaaatga agaacagtct gttatcttaa acatacacaa tattaagcga gactcttgtt
      241 ttactttaga ctggaaaaat atgccaggga cagtcaaagt caacacaaag taacaaacag
      301 caaaaggtag cagagagaga aacaggtaag tgcagctctg gtcaaatcca tagcagttct
      361 ttacgtcagt taacggctca tttacatcag agtttctaat cagttacatg caagcccaaa
      421 gaagcgtttg atcactacac atggtaataa aatttgatta aatttatcag gcaactgcta
      481 aaatatgaaa atttgcagat gtaataaagt agctttatct gaacttgaac aggacagaca
      541 aaagtaaatc attccgttgg ttaaaaaaac cctacattca g
//
LOCUS       KCLJ01001962             713 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 219046cal ultra-conserved element locus
            uce-3188, sequence.
ACCESSION   KCLJ01001962
VERSION     KCLJ01001962.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 713)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 713)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..713
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="219046cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>713
                     /note="ultra-conserved element locus uce-3188"
BASE COUNT          212 a          149 c          142 g          210 t
ORIGIN      
        1 tctccagcct ttttttctgt ttgcagaggc aacaattgta tccattacca aggtcagtgg
       61 tttggagaaa atagcagcta ccagaaaccc tctagaataa tatctccagc aggtgataga
      121 ttagttggaa caaattggaa ccattgcact tcagcaatcc tggtttcttt caagctgttt
      181 taaaaatgtc gtcattttaa tacacaatat cagccctgcg gaacagtcca cagcaggtta
      241 atttgaatca tatgatgtat cactgccctc agctgacatg agctccgttc catgtgtgaa
      301 gccataataa atccattccc aaccgaggca aattccctgt gagaaggtga actaatccag
      361 gcctcacact ggcatgttag ccctccgtaa ttgaaagcag ggccacctgt tcccagcaca
      421 gttagcctat agagagaaaa ttagcattag atcagatact taatatattg aaaaatcatt
      481 catactactt gcaagttcag ctgtgggctg cttagcatga catcatatat aaacctagga
      541 atgtgcccac ttgatcccag tttaacagtt ttgttaacca tggtgtttgt taactttgaa
      601 aggagaattt tttgatttaa tgagagctga cacgtgagaa ggggaactag ccagggtgca
      661 gacttttcta attaactctg ggtcatttgc aaaacttttg agctttctag tag
//
LOCUS       KCLJ01001963             913 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 219158cal ultra-conserved element locus
            uce-1805, sequence.
ACCESSION   KCLJ01001963
VERSION     KCLJ01001963.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 913)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 913)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..913
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="219158cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>913
                     /note="ultra-conserved element locus uce-1805"
BASE COUNT          286 a          189 c          180 g          258 t
ORIGIN      
        1 agaaagcagg cactcagtta aacaatccat acctctacat tttcacttgc tcctttagct
       61 gaacagtttg cacagagtgc atcaggtgcc cagcttgacc tgcaaccttc tctgaaatca
      121 cccattatgg ccagaccttt gatgcaatcc ttgcaggctt tcccaaaatg catgtattac
      181 aattattcag tccagaggct gcatatatcc ctgtgctgtg tttcctccag cagagcttga
      241 aaatgtgcta ttattgaaag agttaaaaaa aatccccttg gaaaagctaa ttattgcatg
      301 cagatacttc tttgtgtgat caaggagggg acaatttaat aggctctgta atacaaccaa
      361 gaacaaaatt gctttaaagg aagtctcttg ttgagtgaca actctgttgc ctgagccaat
      421 taggtcccaa taaagagtgt tgaattggct cctgctttct cattaattat gttctgtcac
      481 agacatgggg cttgatttag caattttgta ttacattaag atactgaaag gaatggaaca
      541 aatggctcac tctgataata ggcattctat acacggtgtg acatttacta tccagctgtc
      601 cataaggcag cctagcactt cagttcaggg gtttatttgt cattgcttca aagggacact
      661 cagcttttca caaaaaagaa acagagaggc taatagatag gacaaaatgt actgctgata
      721 tgctttatta gagataggat gctagggttt tgctaacaag ctcatccgtt gggactaagc
      781 cgagtttgct gtcaatcatc ctacacacaa aagcacacta gttaacaagg agaaatgaat
      841 tacagacact tattcctgcc tgtgggatca caaatacacc aatctgtgaa agaggcacaa
      901 actcagaaga caa
//
LOCUS       KCLJ01001964             562 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 219271cal ultra-conserved element locus
            uce-6829, sequence.
ACCESSION   KCLJ01001964
VERSION     KCLJ01001964.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 562)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 562)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..562
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="219271cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>562
                     /note="ultra-conserved element locus uce-6829"
BASE COUNT          166 a          116 c           81 g          199 t
ORIGIN      
        1 attttatgtg gccatttttc ctaacaaaga gagctgcttt tgatgttttg aattgaatcc
       61 acacctttaa tgttctatct gaaattctat gactttccaa agagacatgc tatggtcatc
      121 tatgtcattt acttaactat tgcatttaca gtgttaccac agtcctaggt aacaatcatt
      181 gaaataactc aggcattcaa tcccggcaag ccacagacta ttcagcactt tgaaattcat
      241 agatttaaca gcatagtgtc agatcatttt tcataaccct tgtttgcttg tcagcatgtc
      301 atagccagta aagagctgct agattagtac aaatatataa atcttttctc agcttcacct
      361 cactgctgtt taatactact ttactacacc actgtgctta ctagtttaaa ataccttctg
      421 tttggagaaa cgcatattta ttattattat tctgcaattt ccctgagcac aggctgacag
      481 ctgcatagca ctttgtcatt tatcattgta cacaagatct gtcaacttgg gaaacaattt
      541 caattctgca tgaaattact tt
//
LOCUS       KCLJ01001965             477 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 219379cal ultra-conserved element locus
            uce-7715, sequence.
ACCESSION   KCLJ01001965
VERSION     KCLJ01001965.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 477)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 477)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..477
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="219379cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>477
                     /note="ultra-conserved element locus uce-7715"
BASE COUNT          156 a           93 c           74 g          154 t
ORIGIN      
        1 aaaaatcatt gagaccaaat tataaacttg agggcaaata gaaaactttc tttgtgatgc
       61 atttctataa atttattcct accagttact tgcagtaagc tgctgaaatt tttctcttat
      121 tatagcatgt attgcaaaaa tgaagtacaa gtatatactg taccttgttt tacctgtaag
      181 gaacacacac ctgacaaaag gcaatcttca catccagagt aggttcacca aaataataca
      241 agaaatggcg gctcataaat acctgcgaca tagaattctt gtctggctgc tgaataatgt
      301 agctctagct tcatttggat tataaaacca acttgatttg ttacccagct tgtcaaaaat
      361 tgtaacactg ttctgtccaa tgcctgtcaa ggttatggcc ccaaatatga cttgattaca
      421 tctaacttta cagtaactgg tgccataagt ttatcatgtc acttgcatat tcctact
//
LOCUS       KCLJ01001966             698 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 219483cal ultra-conserved element locus
            uce-7699, sequence.
ACCESSION   KCLJ01001966
VERSION     KCLJ01001966.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 698)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 698)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..698
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="219483cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>698
                     /note="ultra-conserved element locus uce-7699"
BASE COUNT          181 a          159 c          158 g          200 t
ORIGIN      
        1 tctcttttaa aagtgtaatt ggtcaatgga aagaataaca gagacaccgc tatgaaaggc
       61 agctttggag tccagtaaac atctgctgct gctttgcaga tgaggaaaaa cagacccaca
      121 tctgcagccc ctgtatccat gcagtgtgcg tttttatggc tgtgatagca gattacggtg
      181 ccactgtcat gagcccttgc agccccagtc acagtggaca ctgcgcattt caatacgtcc
      241 tccactaatc tttcccccac tgctcccatt ccctggctgc taatttcacg caggcactta
      301 aacatgatgg ataattgtgt tctgcttatc aatgtttaat ttaagggctg ttccgtctga
      361 cctgaatgcc ctctgcaaga gctgtgcctc attattgatt tcatggtcat acctgtgaca
      421 ttacctgctt tgtaggaagt agactttgac attcctgtga ggctttggca gccagagcta
      481 attgtcagaa gaataatcga gtcagcaaaa tcattacagg tgatctgtat gttaccactg
      541 ttttatctgc ctctaattag gtgcaggaga ggtaactcat cacggtaagc acaccacact
      601 ggtttgatgt ccacaaatag agcaagatga gcacaggagg ggagttattc attaacagca
      661 gcgattcagt gtgttggagt cctgtgctgg tgacatct
//
LOCUS       KCLJ01001967             648 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 219594cal ultra-conserved element locus
            uce-6414, sequence.
ACCESSION   KCLJ01001967
VERSION     KCLJ01001967.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 648)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 648)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..648
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="219594cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>648
                     /note="ultra-conserved element locus uce-6414"
BASE COUNT          179 a          135 c          117 g          217 t
ORIGIN      
        1 cagcataagg tgcagctttc ctggcccccc ttacgtttca ccaaatgcaa ctttaataat
       61 agatatcata taatttatcc atacttgtgt cagtcctatg gaattcttgc aacagtttat
      121 gaactctgaa atagaaacgt tgaatcccca tcttccacaa atagcagaaa aggtggagac
      181 aatgggaaaa ttgtgacctt ttggcaattc taatgccacc agtttctgtg tggcttcctg
      241 tgatggctct gttaatctct cttttagtct cttcctccac ctcttacagg cttctgtctt
      301 caatctcctt tccttccttg ctagttcata ctgtaactga cgatgggttt tcttctcgac
      361 tggcttcatt tttgctgttc ttccaggaga aaaatctatt acctgcatcg ccgatacaag
      421 ttcatgaata ggtgagtaca gctctcatgc ctttatgctc atttggaccc agtaacaaaa
      481 ataatggtgt aagtcaagct ggatggaaaa gttaatttct agaaatgata aagggagtgg
      541 ttacatactt gcatttttaa ggcatccgca tgtaaaagaa gcatttttag gaataagaaa
      601 attctttaaa gaactgtacc tctttctttc catgtagctt attaggga
//
LOCUS       KCLJ01001968             597 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 219703cal ultra-conserved element locus
            uce-747, sequence.
ACCESSION   KCLJ01001968
VERSION     KCLJ01001968.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 597)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 597)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..597
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="219703cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>597
                     /note="ultra-conserved element locus uce-747"
BASE COUNT          212 a          103 c           95 g          187 t
ORIGIN      
        1 aaaatcttgt gataaggtac cagtaattca gatatttgta tatgcttcca cagacgtata
       61 ctggttttat tggtatgcgt tcccttaata gtataatcta aatgcatttt acttgataag
      121 tttttatgca gatcttacaa cacatttttc taccacatgt tggaacattt gcgcaaaaaa
      181 aaatcccatc tttatgtttg aaatttatgg gaacacaatt aaaatgagag gggtccaaag
      241 gtatcaagat aattacattt ttctaatctt actaaacaag ataaattacc tgcaggccct
      301 cttataaaag atgaaatctt cataataagt gaattaatca agcagcagct tgctactgca
      361 catgcattta taacaggaat gattcaaaga cttattttat ggggaaatta atggaaacag
      421 gcttttcatt cttctgcacc aattgaaaac ctcagcaacc agctgcccac ttgtcaagaa
      481 aacagaaaga agctggaaac aaagataaat aaaaacacct ttttcctggc acttttgaag
      541 agaaaaagca gctctcattt acagcagcca tctgtttgtt atttaatatg ggtgaat
//
LOCUS       KCLJ01001969             445 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 219814cal ultra-conserved element locus
            uce-2509, sequence.
ACCESSION   KCLJ01001969
VERSION     KCLJ01001969.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 445)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 445)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..445
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="219814cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>445
                     /note="ultra-conserved element locus uce-2509"
BASE COUNT          124 a           85 c           82 g          154 t
ORIGIN      
        1 cttgattcat tgtaaaacct cttgtccagc catggctgga caactacttt ctttgtttct
       61 tgatatgaca ttctcataaa atactgcctg attctgggtt acattagcgt ttgatctatt
      121 cagttgtatt agcttgtttc tgttgtactt aagtcaaagg tgcccatagt ttagcgacag
      181 tttccaaagg ctttagtacc atctatatta caaaatgggg gacccaaact cccggaagaa
      241 acaagctctg aacagacttc gtgctcagct tagaaagaaa aaagaatctt tagctgacca
      301 gtttgacttc aagatgtaca ttgcctttgt gttcaaagac aaggtaactt ggttttaaat
      361 taagtgttct gtgcaaatta ctgcctgatt gcttcttaac agagtccatt gactaattgg
      421 tatcacttag ttcatgttag tcatt
//
LOCUS       KCLJ01001970             725 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 219921cal ultra-conserved element locus
            uce-3638, sequence.
ACCESSION   KCLJ01001970
VERSION     KCLJ01001970.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 725)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 725)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..725
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="219921cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>725
                     /note="ultra-conserved element locus uce-3638"
BASE COUNT          210 a          150 c          123 g          242 t
ORIGIN      
        1 ctttctccat agttgtactt tttgtaatag gacccagtag ctctctcttc aaaattgact
       61 gtattcccca catctttgaa gatttttggc atcccttgtt cacatgcaag ttggggtcaa
      121 gcttttgagt cccctaatca ctcagttctg gcatagtcct gttgccacta aagccttttt
      181 tcatgcctat ttaatgcctc agaagtgctt tcaagtggtc tttgataaat catagtaagt
      241 gttattccag tcactcaata gcagtacctg ctggagtctt ttttagctcc caaggcagct
      301 gttccctctt gccttatttt accagtgaca gtaattcatt ccacttgagc tgactagctt
      361 atttcacatt tatttgcaca ttatgagcag tgtcattcta cttacccttc agacagtaaa
      421 tggtttgaaa aatgcaactg taacaaatat taggtatggg gaggggaata ggaaaatgta
      481 acgggggtcc aaataaaaac ataatgaata aataatattt taaaattatc tcaatcatcg
      541 agtgtatgca aaaatcaaag gaaactggca ttattccttt gagaatacat ttctctttcc
      601 caccatctag tttagcttcc ctagagtgga gttaaataaa atattaccca tcaggtcagg
      661 aaaataatta gtcctgcatt attgcctcct tgccaagcaa tcaaacttga cccgtataga
      721 ttatg
//
LOCUS       KCLJ01001971             486 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 220030cal ultra-conserved element locus
            uce-3589, sequence.
ACCESSION   KCLJ01001971
VERSION     KCLJ01001971.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 486)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 486)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..486
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="220030cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>486
                     /note="ultra-conserved element locus uce-3589"
BASE COUNT          170 a           89 c          101 g          126 t
ORIGIN      
        1 gattatgttg ctaccaacag catttcctgc acacaaaatt gacagcattc agtgtatatt
       61 gtcaaattag attggttatc atgcatgagc atatggtgtt aatgggtttc agaggctgga
      121 aaatgccttc atagactaga aaggcgtggg caaaacataa gagctgtaaa attcagtccc
      181 aaatcaggcc tagttgcacc tcaactcatc atggtcagcc ttattcaaag gaataatgca
      241 tagaagaaat cacacacaca tctcgtaaaa caaaatttat ctttaatttg taagtgtcaa
      301 cagcagtaca aaagatggag tgatggtgaa tagattaagg gtagagagga cagtcttgag
      361 gtaaatgagc ataaataggc agtcttatag acactcccct gaggggtcta aacccctatc
      421 atggcatata ctgtatcacc caaggatgac atgtttaaca tatcaggaaa gcaccttgtg
      481 caaaaa
//
LOCUS       KCLJ01001972             573 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 220134cal ultra-conserved element locus
            uce-1629, sequence.
ACCESSION   KCLJ01001972
VERSION     KCLJ01001972.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 573)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 573)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..573
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="220134cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>573
                     /note="ultra-conserved element locus uce-1629"
BASE COUNT          192 a          123 c           88 g          170 t
ORIGIN      
        1 tcttcatgct gataacaata aagtatttta tacagcgatc aatttttaat gctttattca
       61 ttgattaaaa gaatataaca tttaacataa accatacaac atcagtcatc aattcaaaca
      121 ttcagctggt ttccttacat tttctgtcag gagaatctga tcacatttat aagataaaat
      181 ctcaccacat ctggcatata cacacactgt gccagtggat tcactctact gatgtacata
      241 taaaatccgc atggtatgtg ctcactggag acaaaacagc gcacacctgt caaaaggtca
      301 ttttaatata agatggtaaa accatttgta aaacacatat aaactttttc cataaataga
      361 atcatatctg gacatctgtt gcataaattg tgttttccaa agcttacaat atagcagcca
      421 ggtctcagca ctgctgggca cccacgttgg ccacttttaa ttattgcaga ctgtccttta
      481 aacattaaat gcacaacatt cgtaccactt aaaactgggg tcaggtggaa gtctcacaga
      541 gaccacgtct gtaccgcggt tgccctgaaa cag
//
LOCUS       KCLJ01001973             512 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 220242cal ultra-conserved element locus
            uce-3828, sequence.
ACCESSION   KCLJ01001973
VERSION     KCLJ01001973.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 512)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 512)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..512
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="220242cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>512
                     /note="ultra-conserved element locus uce-3828"
BASE COUNT          170 a          110 c          106 g          126 t
ORIGIN      
        1 gtcttccttt caactgctag aggccttgaa aagcagaatg agttaagttc ataatataat
       61 tgcttctatc ctgactaaaa gaaactacaa aaaattcagg gcatcagaaa ctcaacactg
      121 aaaagggaaa gaaggtgcaa gtcttcccag aagtgagccc cagatttttt tacatttctc
      181 tcatacaaaa gtgatacata atagaaaact taacttctgt tctgtttggg tgagccagga
      241 agccttcttg cctcatgtaa atggaatggc agctaggcac ttctgaaagg agaagatgaa
      301 aagactgtca ggaattaaaa gtgtgcaggt tatcaatggg actgcaagcc caacagcaac
      361 tgcaacttat agtgagaggg aacctgtcaa ccagcatttc atagcagatg catggcccag
      421 aaagtcatga agtgaggctc aagatcccac ctggcacctg aactccaaac ctcttgtaat
      481 caactttgct ctttggacca cccataccag tg
//
LOCUS       KCLJ01001974             585 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 220352cal ultra-conserved element locus
            uce-5113, sequence.
ACCESSION   KCLJ01001974
VERSION     KCLJ01001974.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 585)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 585)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..585
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="220352cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>585
                     /note="ultra-conserved element locus uce-5113"
BASE COUNT          180 a          119 c          111 g          175 t
ORIGIN      
        1 atattaattt ggaagcagta gtcttgtagc aacatattga ttctggagaa gaacagtact
       61 actttttcct tagctctatc atctcttaca attgactgaa aagaaagttt tcttaaattg
      121 ttagaacacg tttattttct tgcaaattaa ttctttttaa ctctttatga tagctttgaa
      181 tcccataaag aaagatgaat tatcacatac tgagcccaag ctgtgaaaca ggaggagaca
      241 aatagagacc cctactgtgt ttaacaatgt agaagaaatt ccagactcaa aagaaaaatt
      301 ttctgtcctt tttctcagcc cacaaaagct gttagcatgg cttcgaacag tggagggcac
      361 tcttgctatg caaaacccgg tgctgacctg gcacactcgg ttagatctat tcagtagcct
      421 gaatctcaga atttgttgag taacagccac ctgtggcaca ggcactagct gtactctggt
      481 taaaacattt gcagtttcta atctgtgcag cgaagcactt cactatatca aacactgggg
      541 cctttctctg tggacgcaga tgtggaacag atgcaagctt cacaa
//
LOCUS       KCLJ01001975             631 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 220462cal ultra-conserved element locus
            uce-6566, sequence.
ACCESSION   KCLJ01001975
VERSION     KCLJ01001975.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 631)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 631)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..631
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="220462cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>631
                     /note="ultra-conserved element locus uce-6566"
BASE COUNT          177 a          125 c          136 g          193 t
ORIGIN      
        1 attcatctgt gtttttcctg ctggagaatt actgcctggc acatcaatag gctgcaaatt
       61 atataagggc tgtgtttttg cagcccgatt gccattgtcg ggagggtctt ttagctaaac
      121 tgcctttttc tgcaggaatt tcagatgtct gtaattgctg ctcctttcag cacagcttaa
      181 ggtatcaata tcaactcgat ttgaatatca taagtgggaa gttgctctaa gcaaaaacat
      241 gtcagttgcc caggtgacat tttgtagcaa acaaggaaat cacaactcca ggaagtgttg
      301 tattttatgc caacaacaat atgacagttt tctctgtaaa gaaaacatga cacttttcca
      361 aatatcagag gatgcctccg ctgctcaagg gattcctgta ctgtcactga aatggaaggt
      421 cacaggctgg tttcatgatt tctatagttt caaaatgttg tggtggagcg tttgcacgct
      481 aaatgctgta ggctaaggga aatctttccc ttcatctctg aaagaagtga caggaagaaa
      541 aaggtcctac tttgacagca gtaacctcta ggtctagagg ttctgcccca agcaactctg
      601 aagtaaaatt acctatgtta atgtgttgtc c
//
LOCUS       KCLJ01001976             387 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 220563cal ultra-conserved element locus
            uce-3992, sequence.
ACCESSION   KCLJ01001976
VERSION     KCLJ01001976.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 387)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 387)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..387
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="220563cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>387
                     /note="ultra-conserved element locus uce-3992"
BASE COUNT          115 a           85 c           85 g          102 t
ORIGIN      
        1 agaagtagtc aaaatgtggg ggggagaagc agtgataatt gttcttctat aaaaaggtag
       61 aaaataccca gcttcatcag taatgcaggc cctgccatcc ccagatgtta cagaagcatt
      121 agaattgctc cctgcaagaa aaattggatt agtcacaatc ttgtcgacta atgggcacac
      181 tctgtgatct ttagagcttc atttactggg ttaatagtgc tttgcctgag ttcctttgca
      241 atagggaacc ctgtaagaag aaatattctg ggtgcagtcc acagccactg acacgagtaa
      301 tatcatattc atcacagaca gacctcgtat ctcattacta ctgaagagtt tgcccccaag
      361 gcatttgagc tcagtcaggc caggccc
//
LOCUS       KCLJ01001977             441 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 220670cal ultra-conserved element locus
            uce-6467, sequence.
ACCESSION   KCLJ01001977
VERSION     KCLJ01001977.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 441)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 441)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..441
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="220670cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>441
                     /note="ultra-conserved element locus uce-6467"
BASE COUNT          141 a           79 c           74 g          147 t
ORIGIN      
        1 tatctgttat atggctattt tttttaataa aaacacttca aactgccttt cctttaatta
       61 aaaacacatc aagccatgga taaagcattg tggaatggct tgttgtggca ttgcctttta
      121 cagctgggaa gcaaatttct aataaaatgg tttttgaaag gaatattgcc ttcattcaaa
      181 tctcctataa aaactaccca tccattaatt ccaattaatg acactacagc atttccacta
      241 acactggtag taattcttgg ctaatggatg attttcaaga aaatcagaat caatgttatt
      301 ttggacaggc cttgcagaat taatttactg ccccgatgtt agttaaatca gcatataaat
      361 cacagtggtt tgaactggtt tctcagtgtc attgaacaca gctcatgaca tgagtttact
      421 gtgggcttta cagggagaac a
//
LOCUS       KCLJ01001978             816 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 220778cal ultra-conserved element locus
            uce-5101, sequence.
ACCESSION   KCLJ01001978
VERSION     KCLJ01001978.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 816)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 816)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..816
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="220778cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>816
                     /note="ultra-conserved element locus uce-5101"
BASE COUNT          284 a          132 c          158 g          242 t
ORIGIN      
        1 aaacatgtat gtttttcata aagctctgga aattgtactg ggcccaaggg aaggtagcaa
       61 gtggaaaccc tgatatcttg agattagaac tctactagtc ctgaggtaca atgtgctgtt
      121 tgtaacaatt ataataatac acctgtacta ccattgtcag tgtggagtag ccacatgggg
      181 tctcattagt attgtattag gactgcatgg ggaaacggat aatggcccat aatgaaaaat
      241 gccaaatttt ctatataata aaaatgaact tgattaatga aaatcacttt cagggaaaga
      301 gttacagcgt tgttagaaat aaaaaatgat gtattaatcc gacactctta cagatggtcc
      361 caacctcctg acaactgcta ttcatttgag atgctattag catgcataat tatgctaatt
      421 aagttgtaat taagcaccaa ttcttcagag agcttttttt gtctatcatt taatacaact
      481 cagcttcaaa gagtgcttaa agctttacac agtgtttcat gagaaagggg ttcccaagtt
      541 tcttagcaaa gattcagcag ctgagctatg gaacagggcc tgtaatcttt gttttggtta
      601 aagggaaaac agcaaattga agcagggtct gccaattgtt gataaaataa ttaacatttt
      661 ctgctaaaat agcacagttc agactaggac aattatgaaa aggagaaaaa tggtataatt
      721 atcaatggag ccaacgccag tggactatta tggctgctac cccctaattt gaaaaaaata
      781 attcattgaa aagtagattc ccgtaaataa taataa
//
LOCUS       KCLJ01001979             484 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 220885cal ultra-conserved element locus
            uce-4001, sequence.
ACCESSION   KCLJ01001979
VERSION     KCLJ01001979.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 484)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 484)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..484
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="220885cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>484
                     /note="ultra-conserved element locus uce-4001"
BASE COUNT          162 a           71 c           96 g          155 t
ORIGIN      
        1 tataatacag tagagcatta aagaagcaga ataagtacat ttacagcctt cttagtgctg
       61 cccacagggt gctataaatg cacaaactgg atataattga agcacatatt aacttacctt
      121 ctgttgtaca ggaagaacat aagcaggccg ttaatgtgca cagtgttgaa actcttaact
      181 tgggggatga gaattagctt gcagtagtaa tttgataagc acctgggaaa attgcaagct
      241 tcatttcctg caacgtggaa tatgattaaa aacagaatat attattatca ggggtaccat
      301 taaaaaatgt gtagacagca ttctatgatg ttaaaacgga aattgaaagt tgtatccaga
      361 tgttgaagat gctgcttgtt aattattgtc taccacagtg cattgaaagt gcaattcaat
      421 tatttgcttt gtcaagcaat attttgatta acttgaacgt taattttgta catctggtgt
      481 tttt
//
LOCUS       KCLJ01001980             768 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 220989cal ultra-conserved element locus
            uce-3633, sequence.
ACCESSION   KCLJ01001980
VERSION     KCLJ01001980.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 768)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 768)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..768
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="220989cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>768
                     /note="ultra-conserved element locus uce-3633"
BASE COUNT          258 a          114 c          144 g          252 t
ORIGIN      
        1 tgaaaaattg gcagaagttt tcaccctgtg aaaacattaa gatacataaa gcaaattgat
       61 aaataccatt taatagaata ttggctctag gatttaatgc tttaacacat agcagtaaca
      121 gatcattcca ggtatggaac atcatatttc aaaagacagt taatgcggta aagggaagga
      181 ttatatgaat gattcttatg cctttatgtc ataaaaagta gcttcagtta tgtggggttc
      241 tggaataagt aaagtaagag gttatgagtt aagttgcaga caaagagctt ctactaagta
      301 ttacatcatc aaaatatttc acagacactc agaaataagc tgtacttctg tatgtcagtg
      361 aagcagcaaa ttgaattctc ataatatgtt ttgaaaatga gtcttgttag gtttgatgag
      421 gtggaaaacg tactgagatc actggtttgt tccaatacat tcagtacgct tttcttggat
      481 gtttgccatg gctaatcttt ttaatggcag tgtagcttgt aaacccattt ggtagagagc
      541 tgtatgtctc cgtttcagag tatcacacca aacaggatgg taaataagtt tctcttcaag
      601 cgtgcaaacc ctttttttga aatacaagaa attttatttt aagacacacc tcagtatttc
      661 ctttattaat tcagtgagga gcagaataaa atgcaaatgt ctttcaaata ctctcacaca
      721 taatatgtag atgtttttta agagttttat caagggcaga cttcagtt
//
LOCUS       KCLJ01001981             596 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 221100cal ultra-conserved element locus
            uce-5280, sequence.
ACCESSION   KCLJ01001981
VERSION     KCLJ01001981.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 596)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 596)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..596
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="221100cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>596
                     /note="ultra-conserved element locus uce-5280"
BASE COUNT          138 a          154 c          148 g          156 t
ORIGIN      
        1 agcacaactg cacacacatc aataattcag gccactaaag gctgctgcgg cagcgacttt
       61 ccaggggatt tcatgttcct gtccctcacg ttcctgccac agcagaaagg aattacagcg
      121 ggatgggagg gagcaggttc ccctctccag ggagctgtgg catgccagag gctgctccct
      181 gctccctccc gctcctgggg cctctcctgc agtccttgac atttcccttc tcaaggggca
      241 agtccctggt gcatcctccc agagtaattg tgaaattatt atggttggtg ttttaattta
      301 aattggatgg agaaatgttg tactgcggct gcctcatttg ctatggattt tcacttaacc
      361 aaattgatta gtcaaccaac tagacttacc ttggaagttg taatcattca ttattagatc
      421 taattttcgt gtcgctccca aatggaagtg caaggactta acggagtcag ggcggagtgt
      481 tggagctgtc gctgtctgcc cggccagggc acgtcctgca tccctgccct tcctgggatc
      541 caggctgctc aggaatgacc atgagtacag cagcaaaggc ttacagagca aattaa
//
LOCUS       KCLJ01001982             658 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 221206cal ultra-conserved element locus
            uce-6125, sequence.
ACCESSION   KCLJ01001982
VERSION     KCLJ01001982.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 658)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 658)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..658
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="221206cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>658
                     /note="ultra-conserved element locus uce-6125"
BASE COUNT          195 a          110 c          117 g          236 t
ORIGIN      
        1 tttttttaag tgataaggaa atatgtgcta cttgcaagtt gctccttttg gcaaacatgg
       61 gatatccctt tttagtatgg attctgttcc atatgtgatc gttccttttt tgccaaactt
      121 ccttagatgt gcaccaaatt gcagagagat gaataccaac tttgcataat ttgaacaaga
      181 aagccttgca gtgctacttt tctgtttaat ttataaatta tgagatacgt aggacataag
      241 taagggcaga atagagccct taatcttaat tattcattct gcagtattat aaatgactaa
      301 agattacctc caatgtttgg tataatctta cagtgtgcag atgtggttct ctttggtata
      361 tgccatcttt actgaactca caatttccat aatgctgtca cattctgcat gggaagcaga
      421 tttacagata ggtaatccat gtaaggtatt ttaaagacag cttattaaag gattgaggcc
      481 tgctgttaaa ttacatatgc tttcaattgc tatgaggagc aaacagtatc aagaagtaca
      541 ataatttagc tacagctgga gaaaggccta tttaaagttt tgatgacaga tcctttaaag
      601 ttttcctttt ttctgctttc tatcttctcc tgcatagtac agtatttcac tttatgca
//
LOCUS       KCLJ01001983             661 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 221315cal ultra-conserved element locus
            uce-279, sequence.
ACCESSION   KCLJ01001983
VERSION     KCLJ01001983.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 661)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 661)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..661
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="221315cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>661
                     /note="ultra-conserved element locus uce-279"
BASE COUNT          211 a          108 c          120 g          222 t
ORIGIN      
        1 atttctactt ttaagcaatt taagatgctg cttggaaaga tatgaagtct cagaaaattt
       61 tcaaagacaa agcactaatg gctcttaata tcactgtgtt cattttaaga gcaaattaaa
      121 aagaacggtg caaataattg tttcatatgt tctttgcttg tgactgctgt aatcatccag
      181 gctgatttac aaatgtagac ttgaaggttt ctcagcttcc tgcagtgtag aagactgtta
      241 ctttggcact cacactcatg cccttgtaat caccactcaa aactgtgccc tggtacttcc
      301 aattcccagt gtcttgattg aacacctcat tctgtgctaa caaggtgtcc aaggtatttg
      361 aacaggggct gcagtcagaa aattgttaat ggtttcactc attaagagtt gctgcactag
      421 ttttggtaat ttggtaactg tctaaattgc aagttgattt ttttccttca ttttaaataa
      481 tgatgctaaa atttgagact aggaacacta acagctaaaa aaccccagaa gggtgcttaa
      541 atcactgtat ttgtattaaa gcaaagggtt ttcatagcag aaaagctatg attttatttt
      601 tgaggttatg ttttaaaatt attgagaaat gcatgaacaa atattaaata gaaatctaag
      661 g
//
LOCUS       KCLJ01001984             533 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 221427cal ultra-conserved element locus
            uce-1107, sequence.
ACCESSION   KCLJ01001984
VERSION     KCLJ01001984.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 533)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 533)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..533
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="221427cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>533
                     /note="ultra-conserved element locus uce-1107"
BASE COUNT          142 a          131 c           97 g          163 t
ORIGIN      
        1 ataagataaa cacacaatta tctaaaatgt aatcttaata tgacttatta aaatagatta
       61 cattttaatg tgcgctgcaa ttttcatcca gctccccccg tgcctctccc ctgacaagct
      121 gcagtgctgc agatacacgg tgaaaagccc gccgctatct ccctctaaat ggctccattc
      181 cgtgttgata ggcagataca gccctcacct ttatcccagc ttgtttctga cccactgagt
      241 tcgtgttaat cacccctgtg ggcaccaata atttccccat atgtggaatt tgataagtta
      301 gagcacccac ttcatttcaa gaagattcca gctggcttat cgctatggac agcttcaagc
      361 acttccatgc tgctccttgt attctgagct ttatcaagtg ctttgcacgt cttttatctc
      421 ttaattgaga cctgactgca agaaatgcct atctcttaaa gtgtggtgca ttaagtatta
      481 acttgaactg ctttggctac ttgaggtaca gccttaagaa gcagaaaagg gtg
//
LOCUS       KCLJ01001985             473 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 221535cal ultra-conserved element locus
            uce-2356, sequence.
ACCESSION   KCLJ01001985
VERSION     KCLJ01001985.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 473)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 473)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..473
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="221535cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>473
                     /note="ultra-conserved element locus uce-2356"
BASE COUNT          153 a          105 c           85 g          130 t
ORIGIN      
        1 aaaaaattat ccacttcctg cagttttcct ttcctcccca taaagcgagt atcttatcct
       61 cagagaaatt cacttcattg ttagaaatag ccaaaattgg cttgcaacta gtaaagatgc
      121 caagaatttg caccttgctc tgtgacctaa agcaaaaatg acatgaacat tgacaaattt
      181 gacaaggaaa tttgtgcaaa aaacaacttc tatttggcta gccaagcagc aaatatgtcg
      241 gatgatatgc tttattaagc aatccatttt tcagcaatag ctgcaccatc tgcaaaggtt
      301 agtgtgcatc aggctttcca cagaatttca tctgcgtctg cagctaggtg caacacacga
      361 ccacattttt catgtacata caattttgga tgcaaataga atacttgatg aaagaggtga
      421 ccttccggac tgacttcccc catgcagtaa agtcacaggc gcagaagcag ctg
//
LOCUS       KCLJ01001986             786 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 221642cal ultra-conserved element locus
            uce-6787, sequence.
ACCESSION   KCLJ01001986
VERSION     KCLJ01001986.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 786)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 786)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..786
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="221642cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>786
                     /note="ultra-conserved element locus uce-6787"
BASE COUNT          215 a          136 c          151 g          284 t
ORIGIN      
        1 tcttaaggga atacatggaa attaagtggt aaatacaagg tagtaaaata tgcatctgta
       61 ttgcagacag ctttgttctg gcaattgatt ataaaattat tgattctact gttctttcct
      121 attgagggtg tcactatgta cttgttcaca ggattgtagg aaatcttgct gtttcttaca
      181 cttgcctatc ttctcattca gaatttgtga taaggttatt ctgcttttat tcttgcccat
      241 tactaccccc atgagggttg gtagaggata aggacagcaa aggtctgtct gtctttattt
      301 tctctatctc ctccctttct atctctctgt ctctctttgg ccgttgaaaa tgtaggtcat
      361 attgcatcac cataaaatgg aacagtcaga aaggtgtctg aaaaatgctg acatccttag
      421 cctggggtgc atgccagtgt cctttgttta cattgggaat agtgttgtac ctgtgtagga
      481 accagcatct ctgttaaggt tagtggtatg gtacctgaat tatgagtcag attttaggat
      541 gactttcatc tgcctgcagt aatttaaaat tagacagata aaatgcagct actcaaatac
      601 acaaggagct aatttgaaat ccttaatctg caataactgt gacggtgtca tttgaataat
      661 gttaccttta acagagaagc tcagtaataa attttgcaaa tcctattatt catgtactct
      721 caattgcctt gattagctgt gcctttctgt cttgaaaagt atgtttatat tatatgtttg
      781 tacatt
//
LOCUS       KCLJ01001987             422 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 221753cal ultra-conserved element locus
            uce-3429, sequence.
ACCESSION   KCLJ01001987
VERSION     KCLJ01001987.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 422)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 422)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..422
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="221753cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>422
                     /note="ultra-conserved element locus uce-3429"
BASE COUNT          140 a           62 c           76 g          144 t
ORIGIN      
        1 aacgggtgct gcacggatgt aaattagcct gtaatttact ttcagtagtg taaagaaaaa
       61 aaatcacttt gcctgaagtg tatgcatctt tcttaagggt gtacccagat tttaattatc
      121 taaatgtaaa tacttaacga attttactta gagtaatgag ctaaagtgca cactacataa
      181 atgagatgtt ctaattaatc atgtatgaac tactggttta aagaaaagct atgtgaattc
      241 tgcgaatgtt gggctattgc caaattgcta atcagcattt gcattcatag atggcttcac
      301 ttaataagtt gtgagacgtt cagcaaatgt tataggaaat tatgagtttt tagatgcata
      361 aacttttcac ttttaactcc ttccatcaca taatctgttg aaatgttgga gaatccttga
      421 aa
//
LOCUS       KCLJ01001988             533 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 221859cal ultra-conserved element locus
            uce-7019, sequence.
ACCESSION   KCLJ01001988
VERSION     KCLJ01001988.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 533)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 533)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..533
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="221859cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>533
                     /note="ultra-conserved element locus uce-7019"
BASE COUNT          124 a          136 c          121 g          152 t
ORIGIN      
        1 tgtggatgtc ctcagtgaag taggcagaga gggctgccaa gtgagggggc acaacttaga
       61 aggagaagaa agaaaaggaa gtctgattaa gttttgtctt gaagtgtctg tttttgggtt
      121 tgtccctgca ttgatctgca agggaatgag gcaagtaatg gccccttggg gaccttcagg
      181 actttcctct caatgtcagc cgtcattttc aatcaccctc tccctcccag ccattaattt
      241 tggcccagga tcatggggac ttgtccatct atcactccta attgacacta aatgatctgt
      301 cagtttattg atgaacggca ggagtggaat tgtcacaata tattttactt tctaacaact
      361 cctcctgaca attttacctt gtccatctca ctctcctcac ataaatctcc attggcctct
      421 cattccttct cttgggctga tctggtgcca gccacctcca tgccatcggc acgcatcaag
      481 gacatcaaga tggcggtaag ctgcgctgtg caggcccagg ggctctctct ccc
//
LOCUS       KCLJ01001989             639 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 221967cal ultra-conserved element locus
            uce-7024, sequence.
ACCESSION   KCLJ01001989
VERSION     KCLJ01001989.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 639)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 639)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..639
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="221967cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>639
                     /note="ultra-conserved element locus uce-7024"
BASE COUNT          193 a          128 c          110 g          208 t
ORIGIN      
        1 aactctgaag tgtagcattc agcctctcaa gtccatgatg tatttcattt gctacggtca
       61 gagcaatttt aacaatgcct ttcattttct tatagcctaa aatgattttc tttctgtgag
      121 gccattctcc aaaacttctc ttcccttttc agggtatcat ttgcaattta aagctaacct
      181 ggtgagtgta ctcacaatag gcttgcccat aaaatggttc aaggcctgcc tgcatgccta
      241 atgaggttga tgttgagcta tttagctctt tgtccttcca taatatctac ttaatgcagt
      301 tcaatgggag tggattgtta gaagcattaa agattctatt aagtctttac taaagccact
      361 ctattctagt ccagctgtat agtggcaaga gcattaaatt tgagaatgta gtgggaacaa
      421 gggacctgaa aaagcaccta taaaaaaagg acaaatttcc taacgaagta agaccacact
      481 caatttaaga cctgttactt ttgtatctag atctaaagac tttctcaatg tgcatctcac
      541 agagttctga attaactcta gtttccctca tgaacaagat acagtttaaa tcttgcacgt
      601 gagtagattt ttgcttcgcc acactactga aaacaaata
//
LOCUS       KCLJ01001990             469 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 222080cal ultra-conserved element locus
            uce-4027, sequence.
ACCESSION   KCLJ01001990
VERSION     KCLJ01001990.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 469)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 469)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..469
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="222080cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>469
                     /note="ultra-conserved element locus uce-4027"
BASE COUNT          125 a          151 c          117 g           76 t
ORIGIN      
        1 gctcacactc acacagctcg cacgcacccg gcgctgcccc agcccttcct tcctcctccc
       61 tgccagcccc tccagggatg gttacacaga gcttggcagg aggacatctg cccatgcagg
      121 gacagggagg gacacgcggg cacacagagc tggcacgccg gactcacacc tcacagggac
      181 acacacacgg gcacaggcct ctgcagggct gcagccccca cggccctcag gacacacaca
      241 gaagccaaga gacattatgg caggcactca cttggatttg ttctcctcat agtgagcact
      301 ggtcttaatg tatctggcca gttctatctg catatcgccg aataaaggaa ccacctgcag
      361 ctgctggaaa agaaaacaaa agatggttga aacatggccc tggccccagc acaacacaag
      421 ggactacctc tgtaaaaagt gcaaaccagg gtcatttcag agctaggaa
//
LOCUS       KCLJ01001991             433 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 222178cal ultra-conserved element locus
            uce-2224, sequence.
ACCESSION   KCLJ01001991
VERSION     KCLJ01001991.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 433)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 433)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..433
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="222178cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>433
                     /note="ultra-conserved element locus uce-2224"
BASE COUNT          156 a           76 c           71 g          130 t
ORIGIN      
        1 cacaaataaa gaccagtgtt ttgttttgcc aatagcctgg tgtgttttcc cctcctcttt
       61 tgttcagaat atgcaacacc atcaaaagga cctgattaga acaaaggaac agggatcact
      121 gtaacaatta tgataaaaat gaaaaggcat aataaaaaac aaacccaaaa tcaggaaaat
      181 aatgccaggt gaagatgaat acacatccgc tgggaacaat tacatagcag atgcatccaa
      241 aaattcatta tcaacgtata atttgacatg ttcctagtaa tgttattcat tgcatttaca
      301 aataattcat cacaggtgtt gtgaactaaa atggaataca agatccttat gttattcact
      361 aggacaaggg gaaatgtcca ctttgtaatt gcacattgca ttcaattttt cttttgttgt
      421 gtaaattctt ctg
//
LOCUS       KCLJ01001992             323 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 222281cal ultra-conserved element locus
            uce-2278, sequence.
ACCESSION   KCLJ01001992
VERSION     KCLJ01001992.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 323)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 323)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..323
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="222281cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>323
                     /note="ultra-conserved element locus uce-2278"
BASE COUNT          106 a           48 c           70 g           99 t
ORIGIN      
        1 tatttgttaa actattgagg tcagaagata atatggcttt gttcacagta ttacataaag
       61 aagattaagg atgggaaaca agctgcttaa atactgtaaa ctaattagtt caatgaattg
      121 ttttcccgag gttcatgaga tatgaaacat tggcaccagt gcgtgaaata cacccttcgt
      181 cagtgctctt ttcagtttat tttcgtatgt gtatataaaa tagagcagcc aaaaagaagg
      241 aggttacaga gagagaccaa agcctgtcag atgattgaag ttgacatttt gtcatcttga
      301 tacgggaggg accagcttca ttt
//
LOCUS       KCLJ01001993             717 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 222386cal ultra-conserved element locus
            uce-7408, sequence.
ACCESSION   KCLJ01001993
VERSION     KCLJ01001993.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 717)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 717)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..717
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="222386cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>717
                     /note="ultra-conserved element locus uce-7408"
BASE COUNT          191 a          149 c          170 g          207 t
ORIGIN      
        1 ggcttcttaa cgtggtccaa agaaaaggag aaccattatc tcctgtttgc tgcagattat
       61 tcaagccttc tagcaaatgg gctaaattcc cactggtgta aactggatta actccactgg
      121 tggagctgag ctgtttcaca ccctatatca ggatttctcc tgttatctct gagcatggca
      181 agaataaaag ttgtagcatt actgctatgc tgtggatgat aatccatgcc tttccctgtc
      241 cccatggagc tgagttgtgt taagattatg agccttagat gtttagagca attttgactg
      301 gatcagaggt tatagcctct gctttttaac attctgcttt tattttcagg ctatgaagtg
      361 taatagttca ccattttggt ttaagtatca caataaaagt cagtgagatg gaacaggcaa
      421 taagcagccg ttttacatca gtgctgctga gactgagtgc ttaagtcttc attaacctac
      481 agaggaagga gctacaaaag acacttgaaa taaaacacca gggatgaggc tcagatcatt
      541 cctggatgtg cacaggcagc actgtggaag gctggtctct ggtgggaatg tctcctcatg
      601 tctgttctct cctgcaataa atagcaggga aaccccacac tgtgcctggg ctgtgtcact
      661 gctgctggac atcgaaagcc aggcaggtac tgcagggact ccatagggat ggcattt
//
LOCUS       KCLJ01001994             816 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 222497cal ultra-conserved element locus
            uce-2306, sequence.
ACCESSION   KCLJ01001994
VERSION     KCLJ01001994.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 816)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 816)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..816
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="222497cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>816
                     /note="ultra-conserved element locus uce-2306"
BASE COUNT          258 a          157 c          163 g          238 t
ORIGIN      
        1 tgcctctccc attcaaacag catatagtta gtgtttgtga ctttcccctt gacaattaga
       61 taagaagata aatgcatagt ttctcttaat tagcctttct taattaaaaa caccagaggt
      121 atttgtgatc ataatgaact cttctgacag aatggtcact tgttcttctg gatgtcactc
      181 catgaaaatt agatttattt ttttaaaggg gtataaattc tgtgctaaga aagaaataaa
      241 tgatgcccgc aaaattttat ctgaatgaga tggatgtgta tcttgtgggt tttagaatgg
      301 tgtggggcag tattagccat cattagcacc ccagtatgga tccaattcac taattactta
      361 tgctgtcttg gttcactgag atttaagtac caagtcaatc ccattatctg cagtctccca
      421 agcttgccag agtcatccgt cttttatgga aaaaaaagca caagggttat caataggacc
      481 ctgaaatact tgggattttc ccacttcagg aggaggcaag attagtcctg actaaagttg
      541 catcttctct aagctgctac tttggatgtg ataaaagtga acgctgacaa ttatccatta
      601 ctacataaag agtaggagag agagaggagg caagagcagt gaggagagaa gtctgccaca
      661 cacgcctgca tctgtcctac ggtcgcaggc agcttttcat atcacctcag agctacaaat
      721 tacaattcat ctgttacaaa cacatgataa tatagtcaga aatcagaaat taaaatattc
      781 caacggcctc aggcctcctc agagagaaag agagag
//
LOCUS       KCLJ01001995             632 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 222607cal ultra-conserved element locus
            uce-5044, sequence.
ACCESSION   KCLJ01001995
VERSION     KCLJ01001995.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 632)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 632)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..632
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="222607cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>632
                     /note="ultra-conserved element locus uce-5044"
BASE COUNT          127 a          131 c          157 g          217 t
ORIGIN      
        1 aaatatcttc aagtaaaaga cccatttata actctgcctt tgcccttaaa tgcatgccac
       61 atcgaatgtg gactttgcct tttgctctct tcttctctct atgcggaaag ttcccttgac
      121 aaatcttggg ctgaatctgt tttttcacac caggcactcg gtgctcggtg tctttcttct
      181 ctggagcttg cgtagcactg gtggtggagg tcttgaagtg ttggatgtgt gaagttggat
      241 ctccacagta tgttgcagtc ctctgaaagg gagctgggat cggtttgctt gttgcttggt
      301 ggtggtgaaa aaaggctctt actggttcct gatgttcagt ttgatagcaa aactgagaac
      361 ttattgtgaa tgtgatcaca tcacaataat gacaccttgt agtgctaaag ttctccttta
      421 tctaaaaacc cgaaatctcc tctctggttt cagttcgctg acagggtagt ctgatgagtg
      481 gaagaatttt ttcattccat tttcctttgt ggtgctgttg cttttttacg tttgtgaccc
      541 gtggagggaa gcagaagctg agtttctgtc ggtactttcc ctgctgctct ggtgccatgc
      601 tctggccaga ctcctggtgg tcgtttggag gg
//
LOCUS       KCLJ01001996             457 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 222716cal ultra-conserved element locus
            uce-4610, sequence.
ACCESSION   KCLJ01001996
VERSION     KCLJ01001996.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 457)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 457)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..457
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="222716cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>457
                     /note="ultra-conserved element locus uce-4610"
BASE COUNT          107 a           96 c          115 g          139 t
ORIGIN      
        1 ccagttcagg ggtcagtccc tgccaagaaa agggcagcaa ctttcagaat gtagcgtaca
       61 gtcagaggct gcaggctgag gagcaaagga gtgggaggtg taccctggct gcagggcttt
      121 tgttactcac actaaccagt gtcttctctt gtcccaggaa cgagtggaat atctctttct
      181 cataattttt acagtggaag catttttaaa agtaatagca tacggacttc tctttcaccc
      241 caacgcttac ctccgcaatg gctggaattt actagatttt ataattgtgg tagtagggtg
      301 agtttgtttt tctggcaacc tttgggactg ggtcaatgct ttacacatgg gtttagacat
      361 tgctgtccat cctgttcctc tggcggtttg caagatgggg aaatttggga gctacagtcc
      421 aaagctcgcc tgaatgtgct taactgccat ttgtttt
//
LOCUS       KCLJ01001997             470 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 222821cal ultra-conserved element locus
            uce-2136, sequence.
ACCESSION   KCLJ01001997
VERSION     KCLJ01001997.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 470)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 470)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..470
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="222821cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>470
                     /note="ultra-conserved element locus uce-2136"
BASE COUNT          139 a          100 c           91 g          140 t
ORIGIN      
        1 accaatataa atgttaccta acccttcaga tgcgagtaag aaggttttaa ttaagagaag
       61 ctccccttct aaccttcaga ataaaaaatt atctatattt atccaggaag tcccaggctc
      121 cctggtttca caagcactca gggcagccct gttggtgaat tccagccggc ccagtaatga
      181 tttaggtgag attaacaaat atgtcaatgt ctattttctg cttaatttaa aagcagcgtc
      241 tataaagatt tttgacttct gaaccctgtt ctcctggaag aaagaaggta acaatgagga
      301 ggggggataa agagtgatta tcccatcatc gatcgtttgt caggagcatt tcttattcac
      361 tgcaccattg taaaaagcta agctctcgat caatcccgta agccccctgt acaattaaat
      421 atcttggaat ggttttcttt ctttcctagt cagatctcga ggcctcaggg
//
LOCUS       KCLJ01001998             447 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 222929cal ultra-conserved element locus
            uce-4094, sequence.
ACCESSION   KCLJ01001998
VERSION     KCLJ01001998.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 447)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 447)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..447
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="222929cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>447
                     /note="ultra-conserved element locus uce-4094"
BASE COUNT          136 a           76 c           69 g          166 t
ORIGIN      
        1 aaagtttttg aactttctgc agttatgaag acttgctgtg tttctgagct atttttctaa
       61 aatgctcttc attgcagaac ttgaagaaat ataactaatc ttttctcctt tctgcactgc
      121 aatcgacgaa gtgtgattaa taatagattt aaatttgcta agtgcattta ctcctttgtg
      181 ccatcataaa gagaatctat tactgtaaaa ttgaggctta gttccaaatt gcaccattat
      241 gaagttttct tccagcaatg ttttgtctct aatatgcttc cctcattgta attctattgc
      301 aaacctgatg tctagcatca agtctcacaa taattatttt aaattgctac taggaacagt
      361 agtcctggtg ggatatattg ctaccattct aacaagatga atttcaatgc tcttgtaacc
      421 atattatagt gtattatgaa aagaaga
//
LOCUS       KCLJ01001999             256 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 223037cal ultra-conserved element locus
            uce-5028, sequence.
ACCESSION   KCLJ01001999
VERSION     KCLJ01001999.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 256)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 256)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..256
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="223037cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>256
                     /note="ultra-conserved element locus uce-5028"
BASE COUNT           66 a           87 c           36 g           67 t
ORIGIN      
        1 ccccccaatc tctccccctc cttcccatcc ggcatctact cacgcacaca tactctctaa
       61 ctttttgttt ttagtagctg ctgccccata agaaatgcta tccaacagac ctggtgcctg
      121 tcaccgcttc ccatcacatg cctggtaatt aaaccctgac tgatttattg actgacagcc
      181 aacaaatccc aacccagttt ttatgatata catgcctccc caggctaaat tcactcccca
      241 gctgaaaagg aggaag
//
LOCUS       KCLJ01002000             408 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 223148cal ultra-conserved element locus
            uce-5933, sequence.
ACCESSION   KCLJ01002000
VERSION     KCLJ01002000.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 408)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 408)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..408
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="223148cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>408
                     /note="ultra-conserved element locus uce-5933"
BASE COUNT          100 a          103 c           75 g          130 t
ORIGIN      
        1 tacactgctg cactcctcat agcccatgct gcccttctgc taaatgctgc cttctgtctt
       61 gcttagttca tggttacccc cctggctggc ctggcaggag ggggctggct ggcctccacc
      121 ccagctcccc aggagtgttc cacacaacgc ctgtggaagt gtacaaagtg tcaacctcag
      181 cgtagttttt aacctggagt gatagcttta ctgatttgcc actttactac tcttgttaat
      241 gaatttttaa tcttcttaat gacattaaac acggaaagta attaaggaaa acaagtttga
      301 aactgctgac ttaaaccctt tattcagaac tatttaatgt agaattaatt tgattttgcc
      361 cattattcaa atgaacacat taccttcctg cgcattggcc tcttttcc
//
LOCUS       KCLJ01002001             699 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 223253cal ultra-conserved element locus
            uce-573, sequence.
ACCESSION   KCLJ01002001
VERSION     KCLJ01002001.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 699)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 699)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..699
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="223253cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>699
                     /note="ultra-conserved element locus uce-573"
BASE COUNT          210 a          127 c          150 g          212 t
ORIGIN      
        1 gcttttgttg cacagacaca gtgctgcttt ggcagcagtg ctggcaatgc tgttttctag
       61 tgcaagatca cggagtgagt tggtagtata tagacagagc aaggcaaagt gcaaacgtac
      121 catttaccaa agctattcaa ttaaggaaaa gaccctacaa agaaaatggt tttatagcat
      181 gtcatgaaat acttgccttt tactttaaaa aagactgttt aagggggatg attgtagagt
      241 atgtaccact tctaacagat ttgctgtgca gaagtacata agtgtgagtg atgtagaggt
      301 acttgtttat tatagagcac atttcaatgc agtaatcata aatattgcta aggttgtgct
      361 ctgttgaaat atgacctaca tactcttgat tgtttgtgtt acgtgatttg tctgacaccc
      421 attacattct gggtaatggc agccatttgt tgctgtgcac agcaggctct tttgacaaaa
      481 gaaaataggc agcaataaaa aagctatagt ctgaattaca ttctgcacag cgctgcactg
      541 ctgagagttt gtgcaagtgt gttaacaatg ctctgaactg cctcttgtca gccttcagcc
      601 tgtaatggcc atctgtcctt ccataaatct gtcaaaacct gctaagttca agagagagta
      661 cagaatatac cttgtactgt caatgcctaa atgtacaca
//
LOCUS       KCLJ01002002             773 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 223361cal ultra-conserved element locus
            uce-917, sequence.
ACCESSION   KCLJ01002002
VERSION     KCLJ01002002.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 773)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 773)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..773
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="223361cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>773
                     /note="ultra-conserved element locus uce-917"
BASE COUNT          242 a          134 c          125 g          272 t
ORIGIN      
        1 attttcaaag ggcttttttg ttttatgaca aatgaatgta aaaatgtgca tgccttgtgg
       61 cctagaggac aaaacagtag gatcaatgtt ctttttgtac tctatgaagc ttgagattaa
      121 agtccccact gataaactga acattcttta aaagtgacca gaagcaaaca gtgtctgttt
      181 gctgctactt tattagaaag ataccactga gaatagctaa gaatactatt tgatcttaaa
      241 caggttgacc aaattattgc agttggctcc agtacatgag atgccttctg caaattattg
      301 tttctggtta taaaccttta taatagctca gaatgaatta tgtatgtatt tcatgttttc
      361 ttttctttta tcagccttga tgttctcatt tcaagtttca ccctagcctc ctaataatgc
      421 aatattgagg ccattcagac actaattatg cctccatggc tttcttgaaa tgactaaatc
      481 agcatcagtt ctataattat cgtgagtaag tttgtatctg tgcctcacac cacatgaaaa
      541 gcacaacttt aaatgattta tgaatatatg catctgacat cgaatgtgca ctttcttata
      601 catacaagag gcatagagat atttcaacat atgttcacct gtatgtatgt tctcagcttc
      661 actgaactct gctgggtagc ttacctgact gtataaaaat tttcttaata tgtgtgatat
      721 accatcaaaa tgtttatatt tatttagata gaacaaatat aagcaagtgt tca
//
LOCUS       KCLJ01002003             415 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 223470cal ultra-conserved element locus
            uce-1722, sequence.
ACCESSION   KCLJ01002003
VERSION     KCLJ01002003.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 415)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 415)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..415
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="223470cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>415
                     /note="ultra-conserved element locus uce-1722"
BASE COUNT          137 a           60 c           71 g          147 t
ORIGIN      
        1 gattacaaat cttacaaaga tgacaggtaa atatttgatg tccctttagc ttctattttg
       61 taattgtaag cttaattgct ttcaattttc aatgtataat ggatcattta attttaaaca
      121 attaaaatta tttgttttac agcaaatatg tattatctgt cttttacacg gcttatggtg
      181 gatgaggaca aaaactttgg aatagcaagc taacactgaa aaaaaaatga caaattaatc
      241 tgtcctatta tccaggctac atcaggaggt tggacttcaa tgcagtacat ttctataaac
      301 agtttgtgta agaactttgg ttcgttatgc ttgattccgc actttttcaa ctcataacac
      361 ccagagtatg agaattttac tgatacttag gttttaacat gggtgagaag gggaa
//
LOCUS       KCLJ01002004             567 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 223579cal ultra-conserved element locus
            uce-4735, sequence.
ACCESSION   KCLJ01002004
VERSION     KCLJ01002004.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 567)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 567)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..567
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="223579cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>567
                     /note="ultra-conserved element locus uce-4735"
BASE COUNT          175 a           89 c          118 g          185 t
ORIGIN      
        1 agcaaataat aatttgggtg ttttccatgg attattgaat aagctgttta aggtgcatcc
       61 ttttcatcct gagacacaac tgtgtctata gtattgaatg ttgatgtgta agaaaagttt
      121 ttgccacaaa ggatcattat taatttattg agaacaaatg aagtttcttt tctcagttgt
      181 tttgaacttt aaacctctat acctgatagg aaagggacac tctaatagta cttcccttgt
      241 gtcctattac tggatgttta tggagtaccc tgcattatcc agggagctga cacaatgaca
      301 gggagtcatt tggagtcaag aaatgctgaa agaggccatt aaaatgtctt gcagggaggg
      361 ttccaacaag gacacatttt gatgctttca ccaatgctca ctaatatgaa aagatgaatt
      421 tgttgctgac aactgttttt caaagattaa aagacagggc agaagtgtgg caaaagttag
      481 ttgttaatgt ttattcctag tcctgcagca ttcaaaaatg tttaggcagg atagcttctt
      541 tctgctttca cttagaaatg aagcaga
//
LOCUS       KCLJ01002005             677 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 223680cal ultra-conserved element locus
            uce-2729, sequence.
ACCESSION   KCLJ01002005
VERSION     KCLJ01002005.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 677)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 677)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..677
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="223680cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>677
                     /note="ultra-conserved element locus uce-2729"
BASE COUNT          152 a          130 c          121 g          274 t
ORIGIN      
        1 agcctataca ttaagtctta ctaaatgact gatgtctatg cacatggaga aatcaatgac
       61 ttaacccagt tcctttttta cacgtttaat cagttgttta atggcaattg cacgcagctt
      121 gttctcgctc tttctctttc tctttaaatt ttagatttca agttttggtt ggttgctcgc
      181 cattcatgtt ggtctgtttt tttagttatt gtgaaaactt tctgtaatta ttttgctgct
      241 gagtttcttc tgcctttctc ttcacctcct cattttttgt cttgcagtcc tgttactctg
      301 atcaacttct ggccagtaga ttctgcgtga gtacttttgc tgaagtgtgc tgctgctgct
      361 actgctgctg cgctccctca cttatttctt tgttcagttt tacatgagat catttccttc
      421 ttttttatga ttatttcctt tgatgcactc tctgaaggaa tgtttcaatc ccaaatgagt
      481 agaatgagat aaaccctgga atttccagca gtcatggatt ttgtactgct ggagtatgta
      541 tttttaacag gggtttcgtg cagacctact aatgcttatc aaagtttgtc atttaaaagc
      601 tttgaataag tgtcgatccc tctgaatgta tactttttga aagacgatat ggatttaatt
      661 cagtttcagg aatgaca
//
LOCUS       KCLJ01002006             704 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 223789cal ultra-conserved element locus
            uce-7967, sequence.
ACCESSION   KCLJ01002006
VERSION     KCLJ01002006.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 704)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 704)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..704
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="223789cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>704
                     /note="ultra-conserved element locus uce-7967"
BASE COUNT          214 a          143 c          139 g          208 t
ORIGIN      
        1 ttttaagtgt gtatttacac aatctcagat atcagagctg gcttcacagt ccaaaatgct
       61 cagaaggcag cagtgcaccc atgcagcctt ttattagctg aatcatcctt gctgtagcag
      121 acctagggtc ttttgtacct aatgttttca gggagacaat tttcacagca tcagagagca
      181 aagtcaatcc taggtcactc ttccagtgta gtttcctttg tactaaatcc tactttcaag
      241 aaaattcttg ccatggttca atggtattta acctatcata taatatccag gtttactgtg
      301 ttagaagaag cagaacagta ttaagctttt cccacaagcc tgtgattgca tttgacccag
      361 taacctgtat tagattaaca tttattctac aactccacag caagccttgg acctggctga
      421 gcagcagttt atggaggaca ctaaccattt ttacaagtgg agcaggaaaa gggaattgaa
      481 tctaagggag taattccaaa caagtatgtt gctgcagcgg ttaaattgtt tatacgagga
      541 gttggggaat tacatctgac tgacctctct ttttatctgc ttaaaagaca aagtgcaggt
      601 ctccatggca agtgctaact cctgtggaat gcagcataaa aatgcatcat ggcaatagaa
      661 cctcaatccc catatcttca aaggaattta agcaaaaagg gttt
//
LOCUS       KCLJ01002007             462 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 223900cal ultra-conserved element locus
            uce-3419, sequence.
ACCESSION   KCLJ01002007
VERSION     KCLJ01002007.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 462)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 462)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..462
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="223900cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>462
                     /note="ultra-conserved element locus uce-3419"
BASE COUNT          134 a           97 c           75 g          156 t
ORIGIN      
        1 tgctgggttt ggtgttttgt gtctggggct ttcagtccat ttcgagtgaa aatatgtaat
       61 tccaggccac tcttccaata catcacagtc attttctgca ctttagttgt ttttctctcc
      121 atttttccca caaaataaaa catcattacc gcaggtttaa agtgcacttt agtgcttgca
      181 atcttcccat gctattcttt aatatttcat cattaaatag caaaataacc tgatatgatc
      241 ctaatttagt gccaattaca ctgcattgat caaagtgacc ttttcatact ggagcacaaa
      301 aatcaatccc gctgcacaac aaatgtcagg gggatgagag caacatataa tctgtgacaa
      361 tcaaaacatt acttacaaat gaaatcacca atgacctgca tgccaaggca atttctgcat
      421 aatgtgcact ggttttattt gcagctttcg ttgggatttt tt
//
LOCUS       KCLJ01002008             537 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 224005cal ultra-conserved element locus
            uce-2350, sequence.
ACCESSION   KCLJ01002008
VERSION     KCLJ01002008.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 537)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 537)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..537
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="224005cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>537
                     /note="ultra-conserved element locus uce-2350"
BASE COUNT          162 a          107 c           94 g          174 t
ORIGIN      
        1 gatcaaggtt agatgctgag attaaaatag accctgatac tgcctgcctt tcatcacagc
       61 ttgcacgcgt gctagttgct cagctagcag tttgcaagtg aataattaag cattattcct
      121 ttactggtgt gttgcagcaa taatggtata tccaaacaag catccctcga caattaaaac
      181 aattatagca taattaggcc tatttcaaag ttttcttaag taatttgaca tgccaaccat
      241 ttacatttca ggtttttatt ggctgaaaag tcagttgtga aacacaaaca cacctgtcag
      301 caattaaaaa ggaagaagta gagaactgtt caggaaataa tatctgtgct aattaaaaac
      361 actagttaaa agcttcctgt ttgttcctcc agttgcccca aggagtgacc ttaacccatt
      421 ttttcatatg ttgctaacat ggtttcccat ctcctgcttc caatgcacga actaaggctc
      481 ttggactaat tttgcttgtt agggtactct acttttgaaa caatattggt tctttgt
//
LOCUS       KCLJ01002009             736 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 224112cal ultra-conserved element locus
            uce-553, sequence.
ACCESSION   KCLJ01002009
VERSION     KCLJ01002009.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 736)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 736)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..736
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="224112cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>736
                     /note="ultra-conserved element locus uce-553"
BASE COUNT          214 a          164 c          150 g          208 t
ORIGIN      
        1 tttcttagct attagctctt tattttgcca gtgctcgggc tgacccagtg tgtgaagctg
       61 caagttggca gctgtgattg cagtacagat ttcacacagt gtaattactg cagtgacacc
      121 aggactgaga ggtacaaaga aaaaaagagg ccctacaggt tattagcact aaacactggg
      181 agaaatcaaa cggagagtca atgcgtaatt tcgaggccta tcaagcctca tcaggaacag
      241 cagggaggaa agtgcttcac ttcatcatct cactctctga cttttgttga aaattacagt
      301 aattaaaaaa gagctaagta cttctcaggc aaggggtctt ttctttaccc atcacctttt
      361 agttggctgc tgattttgtg tgaccttttt cttggctctg tctatcgcag tcaacacaga
      421 tctttgttga atagctctct aaaacctaat tactatctgc tgggtgattc agtattgatc
      481 agaaaaggtg gcacagcaaa ataagagtac cagcactgtg gccccagcaa tcgaaaagta
      541 attctagccc catagaaacg tcccttccat cccacttatt agaagcagct gtgatgttgc
      601 caaatcgata cacaacattg aattgcttct ttgactaaaa agctccccca gaactcgggc
      661 acaatcagtg gcctctgact tcaaaggccc taatgctgta tttgagtgaa taaattcccc
      721 attggcaaat atttct
//
LOCUS       KCLJ01002010             519 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 224220cal ultra-conserved element locus
            uce-6158, sequence.
ACCESSION   KCLJ01002010
VERSION     KCLJ01002010.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 519)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 519)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..519
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="224220cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>519
                     /note="ultra-conserved element locus uce-6158"
BASE COUNT          116 a          125 c          155 g          123 t
ORIGIN      
        1 ggccgtgtct ccagcccggg aggcccgggg aaggaaagcc ctggaggtgc ccccgccgcg
       61 cggtcccaag tccgctttag cagtcaggca tggagttgaa tggaagttgc attcttttgc
      121 acgctctgct ccaggaggca cttttctttt ttccacggaa gggaaatagg tttgagagca
      181 aattggggga aagggagaaa taccagggga gcgagagcca cattatgttt ccattttcct
      241 ttaatgaagg ccctgtggag gtgtatttga aaacacaggg tctcctatgc cttcaaggag
      301 ggtgagaaca ctgtgctggc tggttccagg gccatatgca gcgtatggtg gccaatgaaa
      361 cagggcctgg ctcgttctct tgcttgtctt ggcagcctgc tccatggctt gcattaccag
      421 ccctggaaca caaccactgc caaactgtga gtgtgtatgt gtgtgtgttg gactccaaga
      481 gctcagcaga agcaaatgct tctgcagctc aaaccagga
//
LOCUS       KCLJ01002011             783 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 224322cal ultra-conserved element locus
            uce-7643, sequence.
ACCESSION   KCLJ01002011
VERSION     KCLJ01002011.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 783)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 783)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..783
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="224322cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>783
                     /note="ultra-conserved element locus uce-7643"
BASE COUNT          237 a          141 c          172 g          233 t
ORIGIN      
        1 gaagtcacca ttgtaaccaa ggctggaatc tgagacagaa ttatgcatga gggaggaaga
       61 gattgtacaa aatattcatt taatttgaat atgtatagga agtgaatgaa agtgttggga
      121 caaatcctgc tctcatttac attaatgcag ccccacaacg tctgctgagg gtagaatttg
      181 atctgacatt agcacaaact aacttttaca tttgccagat tcttatttgc tcacagcgtg
      241 tggccagcca gaaatataaa taaatcaaat ctgtttctag gaagattcca gcaacccttt
      301 gaaactttcc ttctttgcat tacaagaaaa gaaggggtag aaaggggaga ggatggaggg
      361 ttacataaat gagagcaggt gcggtcgtgc agaagtaact attcagcata tgtaagtgca
      421 gttggaaaat cattgtcttg cagagaatac ttgaaattgg tccctaatgg ccttggtttt
      481 tgtcatatgg tcttgattat caggctaaaa ttgcattgct gatgccttta gtgtgaacga
      541 gatggatgaa taattattac gtgcgctgaa tacctctctg tgaggaggaa ccaggacatc
      601 ccctggtcac cacagctacc atttcacctt gctgtcaaga aaacagcaag tggccaattc
      661 atcacttcct tattgttctt aaaatatatg tttattgtaa taagtgctca taaaacccca
      721 gcgttgcaaa gttatatgtg ggaccctgct tgcaaagacc ttgctttatc tttgtgtttg
      781 tgc
//
LOCUS       KCLJ01002012             636 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 224434cal ultra-conserved element locus
            uce-1314, sequence.
ACCESSION   KCLJ01002012
VERSION     KCLJ01002012.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 636)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 636)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..636
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="224434cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>636
                     /note="ultra-conserved element locus uce-1314"
BASE COUNT          157 a          153 c          116 g          210 t
ORIGIN      
        1 aggccccacc ctgtgcaact tcacctcata actctggctg tgcaatttga gctcgatgct
       61 aatgcattga ttttgcttta atagaatttt gttgtcgatg gccggtgctc agcacggtgc
      121 aggcttcaat cttaacccat ctgaaggctc tgctcgtttc cagttgagct ccgttcattt
      181 ccagttgaat aggttaagca aagacagacc tcactgttct caattcactt tatgatcctc
      241 ccatcataaa aaataatatc agcaccttgc ttttcatgtc agaactacat ttgagctgct
      301 attccctatg cccatgagta aatcccataa aagccgcccc gttgtactgt cgctattttt
      361 ccttgtggat gattgattga tggatgagtg ctgacacttc aatgaagcta tttcgactgc
      421 catctcaatc cgatgatgtg aggggtatat tttctgtcca tgcctcatta cttcagaatg
      481 acattcctgg aacttcattt actttttccc tccttccctc aagcgccata ttttttccca
      541 tctaggttat gcatgccata aaaaaagcaa tttgctatta tatgtggcat aagggcaaca
      601 ctttccctag gaggtaaata agaagggcct tttttt
//
LOCUS       KCLJ01002013             494 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 224541cal ultra-conserved element locus
            uce-3976, sequence.
ACCESSION   KCLJ01002013
VERSION     KCLJ01002013.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 494)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 494)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..494
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="224541cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>494
                     /note="ultra-conserved element locus uce-3976"
BASE COUNT          142 a          112 c           91 g          149 t
ORIGIN      
        1 gttctccctt cccctccact ccagggtttg aaagtgtgct tttgtcacca ttgccatggc
       61 ttccaaaggt tctttaagca ccccacaatt accagagctg gctaatagac catctccttg
      121 ataaacttcc ggggagccca ggacaagcct ggttctttaa aagtttatcc ctgtggcacc
      181 atcgtttaag catccatatg ggacagtaaa aatggaagac gacacattaa atgacattat
      241 tataaaatgc aatactcttg gaatgatccc ttattaaatt aggctctatg atctgagatg
      301 aatttccccg atccctaatc catcaccaga gaaatattaa aagataggtc tcaactggca
      361 ttagaatcgc actcagtctc tactttcatt attttgaatt agggtgctac tggggggaag
      421 cctcttaatg agaattagag tgattcactg gcctcctttt ggattttgac aagtaaaata
      481 ttaactcttc agtc
//
LOCUS       KCLJ01002014             461 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 224649cal ultra-conserved element locus
            uce-2769, sequence.
ACCESSION   KCLJ01002014
VERSION     KCLJ01002014.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 461)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 461)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..461
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="224649cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>461
                     /note="ultra-conserved element locus uce-2769"
BASE COUNT          144 a          106 c           63 g          148 t
ORIGIN      
        1 aataacgcca gccaagccag ggcaaagaat atgtctagtc attaattcta cttgtatcat
       61 ttctcattcc tcaaaatggc aataaaagga tccctcctta gaaatcagcc tggccatggc
      121 catactcatc tccataatag cacaatttcc aattcacgcc tcattttcat taatgtttct
      181 agccataaat ttttaagcat atgataaaaa atttctgaag cggcataaaa ctaacatgaa
      241 gagggagttc attagtatgt gaccctaatt agaaattcca tattaacttc ccatttctac
      301 ttgtgcatat ccagcagcag gcctaatatg ctgtgtacca gttgtacatt tgttttaaaa
      361 gctctttccc ttcctcattt ttacacaatt tctatgtttc ccctgctatt gaataagtca
      421 acagacaact gtatcacagc agcacctttt gtgtcacaaa t
//
LOCUS       KCLJ01002015             419 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 224758cal ultra-conserved element locus
            uce-6969, sequence.
ACCESSION   KCLJ01002015
VERSION     KCLJ01002015.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 419)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 419)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..419
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="224758cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>419
                     /note="ultra-conserved element locus uce-6969"
BASE COUNT          125 a           79 c           77 g          138 t
ORIGIN      
        1 aaaagcaatt tctaaaataa agacatagca gtattcttat cttttttcct ggtacgctgc
       61 tctgtgtctc atgaagattt ctggcagagt gagaaaacct ggtcagtatc agagactttc
      121 ctgggacctg tctgcagtgt cgacaagcag ctaagctgaa tattaataca ctctccatca
      181 tcaaaagctg ttgcataccc aaaggatgaa aaatatttta atcagctttc agcttgtcta
      241 gtagaagtca gtttattcct ttgggattat acatctatgt gctcaatttt tgtcttcgtg
      301 ctctctctcc gtacatatta cttttgaaac tagcagcaaa gagcctaaat ctgctgtttt
      361 gttgggaaaa gccagctaat gctgtgattc aattagagta ttttacatta aagaagaaa
//
LOCUS       KCLJ01002016             653 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 224859cal ultra-conserved element locus
            uce-4507, sequence.
ACCESSION   KCLJ01002016
VERSION     KCLJ01002016.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 653)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 653)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..653
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="224859cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>653
                     /note="ultra-conserved element locus uce-4507"
BASE COUNT          232 a          113 c          123 g          185 t
ORIGIN      
        1 aggtcaccaa atttaaatta aagtgacctc ttttaaagca cattactaaa agtactatgt
       61 ggagggaaat ttaatatgaa tggttaaaat gcatggaatt cagattttac tgtcaaacag
      121 ctcaattaaa caaattgaac ttttaagcaa caaaagggaa ttgaatcaaa ttagaaccag
      181 agtgggatct gaaatgtgga catttatgag tgatagtcac agggccctcc agcagtgagt
      241 tttctttatt tgttgcctca gcagttagag gggttggcag gctgcaatac aaaaggataa
      301 aaatgttcac cattgaaaca cagtttttgg ctcccaataa atcatctgtc acttcatcac
      361 agcccagtag ataatgagca ataaagtttt cacactcagg caatgaggaa gcagacacaa
      421 gaaatacagc taaagctgct gtgtctcttt tctgtaaacg caaggtgctt tgtgtaataa
      481 atgacctctg gatttctgga aaagaataat tccagcctcg gtaaaataaa ccatttggcc
      541 aaatctaata acattactta gttcctttaa tgaaagaaat aatcacatta tatatatgag
      601 ctacagccat ctataacagg aagagattcc agggtattac ctctgaagtt gtc
//
LOCUS       KCLJ01002017            1019 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 224970cal ultra-conserved element locus
            uce-736, sequence.
ACCESSION   KCLJ01002017
VERSION     KCLJ01002017.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 1019)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1019)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1019
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="224970cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>1019
                     /note="ultra-conserved element locus uce-736"
BASE COUNT          309 a          198 c          183 g          329 t
ORIGIN      
        1 taaagttcag ttttctacca gcgctttgaa acaataaatt tttgtcttca ctctgagaga
       61 ataaagcatt actctttgtg agtgatagca atctgttttt ctgtcctagc aggaatacat
      121 taaccaggaa gccctctgca catgattata tttcttagct ttgaagagac aaccattata
      181 atatatcaat gaaaaataac atctttcttt aaattaacta atatctacgt ttaatgaagc
      241 tcagtttata gtgatggatg aagtgctttt ctttcagcct aattatgtgc acagctttca
      301 gacaacaagg agtgtcttta acattagata agaacctagg cttttatctc aatcaatagt
      361 ctttagcctt tgaactcatg tcagagaaag accactccgt cacattcagt tctacctgac
      421 ctctttcttc ttaatgcaca ctgccattta cagaacgaaa acacacagat atatatgacg
      481 aagtgaagta ttcagggtat tttgtgtaca ggggggatgg gttttatggc tgtagaaatg
      541 ggtgactgaa atgatgatgt taaaattttc ttgtttcctt tcactgggct ttgtgtatct
      601 caaaggagcc ccatatggtg ctctttgtcc gtgtcattac ctcgttacag ccgctgtctg
      661 ccagccaaag gtagaacgct gcagctgtag acagcgatac aactggaatt gtctaaggtc
      721 aacagtgccg taattacttt aaaatgtcag cgtacaataa aatacaacag ttcatctggc
      781 agaaagcaaa ttagctttga ccatagcgta attacccttt tctcagcacc attagaagag
      841 atcaaatctc cacattcagt gtttgaggaa aggccatcag agtacactct acctgacaag
      901 gatgcacatt tgccattttg agatgtaatg aattgtccct ataatagaaa tttttatatt
      961 tgactctgga attgaaatgc gtaataacct ggcttcttca tatttaacca tttctactc
//
LOCUS       KCLJ01002018             753 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 225078cal ultra-conserved element locus
            uce-3455, sequence.
ACCESSION   KCLJ01002018
VERSION     KCLJ01002018.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 753)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 753)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..753
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="225078cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>753
                     /note="ultra-conserved element locus uce-3455"
BASE COUNT          211 a          160 c          140 g          242 t
ORIGIN      
        1 ggttctctga gggaagtttt aatttgtgct tcgggcttca tggcagccct actagcaaag
       61 gtgccttggg gacatgctga attcatattg ctgtgacacg cagccgagtg tgtgcagagg
      121 ccacactagg acagaaaaat caaacggtag catcatcagc ttttctatta tctgccccac
      181 tttgtgcaaa tttcctccag cttccccaac acctcttgct ttgctgttct tccttaagac
      241 atgggatggg gatttgtcaa agtcaatgag cactttatta cagtgagagt gctcagtaat
      301 gaacaattca gcaatttaat gagattctgt agatctgtct ccagcctgtc catcaagttt
      361 cacttctata aagcaccctg acactaatcc tctggcatac ccaatcttca ccctgggctg
      421 aatattagat tcttccatgg tatattgcat taccactata accttagcaa aaatgatgaa
      481 cttaactaca cttgaggcaa tatagctggt ctgatttgat tttcttctat tgggttgact
      541 atgagggaat tacttattta ctaagataaa gcccagtttc ttattgcctt ctgaatgccc
      601 aaattggtaa atatttatat gtgtctttta acccatcctg ggaacctgga atatttataa
      661 tatttattcc tggttttaca aactgaatta aaaagatgca tgcatatttt gcctgcagca
      721 gaaacctagt taaaaaaatt cttcggaaca gca
//
LOCUS       KCLJ01002019             754 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 225190cal ultra-conserved element locus
            uce-6020, sequence.
ACCESSION   KCLJ01002019
VERSION     KCLJ01002019.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 754)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 754)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..754
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="225190cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>754
                     /note="ultra-conserved element locus uce-6020"
BASE COUNT          230 a          158 c          141 g          225 t
ORIGIN      
        1 tttttgaaag ggtaaatagt taatctagca tgttatttcc agtttagtct tgaaatatct
       61 aactgttgca ggtgcctcat agataattaa gtagcttagt gcgaaacagt ataatgaaac
      121 ttttaaaaag gcaataggaa caaatttccc acaacaccaa gagtgtattt tgcacttacc
      181 cacaggagac atctcaggaa ctccagcagt gtagggacca tccagaaatt ttggctcatt
      241 gtcattgatg tcctgaatct taatgacgaa ctcagactct ggctccacgg gtttattagt
      301 cagcctatct agagcttgtg ctcggagcgt gtagtaggcc tgctcctctc gatccagcct
      361 ctttgtagca tgaatatccc ccgtgttctc atcaataatg aaaatggaac ttgccccttc
      421 gcctgacaag atgtatttga tggaaccatc tcctttatca acatcagagt gaagctggtg
      481 aaaaattgat gagagatgag attaacttac aagagagtca gtggcatgga gatataattc
      541 ctgtgttgag cagtagtaca tgaaattttc ttgttcctgg aaatataagc tgaatgttta
      601 tcacacggca tgtcattaca atctataatt tactccttta agcacaaaaa cttcattctc
      661 atgccagatt tttacacagg caaacacatg cccatgactc ctaaccacat tgctcacttc
      721 agcttataat ccttctgaaa ggcaagactt caaa
//
LOCUS       KCLJ01002020             644 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 225302cal ultra-conserved element locus
            uce-2591, sequence.
ACCESSION   KCLJ01002020
VERSION     KCLJ01002020.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 644)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 644)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..644
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="225302cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>644
                     /note="ultra-conserved element locus uce-2591"
BASE COUNT          206 a          130 c          104 g          204 t
ORIGIN      
        1 ttgttacttg caggatacca cacaagttat aaagaagcag gaggaaaaag aaagaaactg
       61 ctcagtttcc tcctcactct gtgccctcac tgtacctttc tactggttac ataaagaaag
      121 agtgtaatgg ttaatctatt gtttattcaa aaccaccaac agaagttaat agacagttat
      181 aaactaattg agtgcgtctg tagtgctatc tcctcattca tctcgcttat tcgatttagc
      241 tctgttagtg ttccatatgg tacagtgccc ctgctgctag gaacagtcat tcattgcccc
      301 ctgtaacaac aggaagctaa tagtttaact gttcctctaa atttgtttga caaaactgac
      361 atttagtgca tcacgtcacg ttgtcagtaa tctgcaattt acccttaggc aggcagtgga
      421 tgctcatttt atttacctct cgtagttaaa agcataatta atattccact ctgaaacaaa
      481 gattagagat ttgacaaaca ttgcaattta aattctccat tatagcaaac attaaaatca
      541 aacacacaca caccattgca taaaggacat gtgtagctgt aatttaactt tttagtcttt
      601 aataccacaa actaatttct gctgtcagtt taatgaggtg gaaa
//
LOCUS       KCLJ01002021             533 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 225408cal ultra-conserved element locus
            uce-3597, sequence.
ACCESSION   KCLJ01002021
VERSION     KCLJ01002021.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 533)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 533)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..533
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="225408cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>533
                     /note="ultra-conserved element locus uce-3597"
BASE COUNT          163 a           93 c           82 g          195 t
ORIGIN      
        1 tacaccttga ctgactcaaa gaactaaagc aaagttgctc tttcttgtac ctgtgctctg
       61 agcaaacctg caaatctttt cctgccatat ttagctcaca aacacactta catatacaaa
      121 atttcctgca atacatctca gtgagtccac ctagtttaca actcagaaat tgtttgtgaa
      181 acatttgtct gtacacattt tatattttgt acatttttga tgtaacatat cttgtaaata
      241 gacagaaaca gtgaaataaa tcatctgaaa atttttgtag tctttgtaaa accctaataa
      301 taagtatttg gtgtcatcgg acttaactgg atgatgtatt ttctattggt ttattgttcc
      361 tctagcttgt aaaccagctt gcttgcaggt gtgcacactg tatctgtcta aattattact
      421 ttgcgattaa agtggaatta tttattgaaa acacagtctg atgtttttgc agtcaggact
      481 acttaacatt tcaaatacat gaataatact gaaggatgtg gtttttctgt att
//
LOCUS       KCLJ01002022             490 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 225517cal ultra-conserved element locus
            uce-7695, sequence.
ACCESSION   KCLJ01002022
VERSION     KCLJ01002022.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 490)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 490)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..490
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="225517cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>490
                     /note="ultra-conserved element locus uce-7695"
BASE COUNT          140 a           83 c          122 g          145 t
ORIGIN      
        1 aaaggtttgc catggctaag gaatgtggct ttttggatag ctggtcaaca tgttaaaaga
       61 agtcaggggg ttttgttaac aggtattggt aagtaataat agtgtaaacc catttaatag
      121 tatgtagtgt gttgcatggt ttcccttaaa gatggattca gatggagtga aatgtagcca
      181 gaaggcagct tggttccttg ccatggcaaa ataacgagca gatcccagca gttgacgtcg
      241 catttgtaaa gctgctttgt catgaagtaa tgaagcagtt ggagagagat tcacctgttt
      301 taaaggaact gactaacaca agtatcccgt ctatatctga atgctgtctc taggtgtaag
      361 ccgtggtttc gccttcgtgg agttttatca ctttcaagat gctaccagct ggatggaagc
      421 caatcaggtt gcttcactca ccaagtctag atattcctga aaatggaaca agtctgtaca
      481 gtttaacgag
//
LOCUS       KCLJ01002023             547 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 225620cal ultra-conserved element locus
            uce-3903, sequence.
ACCESSION   KCLJ01002023
VERSION     KCLJ01002023.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 547)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 547)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..547
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="225620cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>547
                     /note="ultra-conserved element locus uce-3903"
BASE COUNT          158 a          139 c          100 g          150 t
ORIGIN      
        1 actaatagag ggattgatta ttcgagtctc tgaatcaaca tattggggga ggagttatat
       61 ctttctcccg ttcccttaca ctttgtttaa aacctgccag cccctctgag taattcatca
      121 atcatggaaa cactgaccct agttttggac agggaaagta ttaaaaaaaa ctaaaagcaa
      181 aatcccatac cccaccaaag aaggacatct gtttctaact tcagcttttt atttttttat
      241 ctttcatttt ttttgttggt aaatctccca gacaacagca gttctgtaga gagtttaaat
      301 atgaaggaat ggcaggacgg gctaagggca cttctaccga acattaacat caactttggt
      361 ggactgccca atgcttcttc cccacgccaa ccacagtgta ccaacgtcca acactgccac
      421 caccgacagc ctgaattggg acagccctgg cagctggatg gaccccgcaa tcatcacagg
      481 taaccgtttc tcactccttc agctccactg gcaaaccatc caatgggtat ttggcacaaa
      541 ctgattt
//
LOCUS       KCLJ01002024             620 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 225731cal ultra-conserved element locus
            uce-2975, sequence.
ACCESSION   KCLJ01002024
VERSION     KCLJ01002024.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 620)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 620)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..620
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="225731cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>620
                     /note="ultra-conserved element locus uce-2975"
BASE COUNT          176 a          129 c          142 g          173 t
ORIGIN      
        1 agtaatttta cataaaatat gaattccgtt tgttatacaa aatacaaaaa cattgacatg
       61 aggataggaa ggagctttac attgcatttt ctctgtttga gagcaagggc tcaggacctg
      121 ccgccatgtc ctagctgggt ttttgctcct tctgtgcact cctcacttgg ctgccattcc
      181 atctgactcc aaaaggagcg agtacaaatt aaagaaagaa tgcagcccta acgcctacac
      241 ccagaagctt tcaaaacaga aggctgctac acctgtgggg atagaacaag tgtatcagtg
      301 tcctgggctc tgccccggct cgtctgcctt tgttagctgg aatgtgccga tgaaacaatc
      361 aggtgcagta ggcgcgtggc agcctgctta aaaaacgatt ctttggagac agggagtggg
      421 ctgtgaatca tgcatgcgca taatctgatg ataacaattt taaatgtggt gattagtgta
      481 taatggaaag tattgtgcta tttggtatga tttgtctgcc actgcactac ccagtgttta
      541 aaaggtccca tcttctatag aaaaccagat tcgttctgta gcaaaagaat aggagtgttt
      601 aggtacttcc tcacacacca
//
LOCUS       KCLJ01002025             833 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 225838cal ultra-conserved element locus
            uce-2012, sequence.
ACCESSION   KCLJ01002025
VERSION     KCLJ01002025.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 833)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 833)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..833
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="225838cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>833
                     /note="ultra-conserved element locus uce-2012"
BASE COUNT          253 a          133 c          156 g          291 t
ORIGIN      
        1 tttactggtc aaacttttaa taaataaata ctcatctcat atcataagca ttagagctct
       61 ttgtttgaca atatggaaca tttaatgtag cctctttcat gctttcctct gtagcatatt
      121 tctctttagt aaaattaggg ggtggggaga caaattgcag taataaggga ctgaaaggtg
      181 tgtaaaacat acggcaaata aagtaatttt ccagtgagcc tgtgatattg ccatttcctt
      241 tagcagtgtt gagtctcctt cataatagaa gttgctgagg gcttagagta ctagaaaata
      301 taaaatacct atgggacata ttccagtact gtacattaaa tttgaggatt ttacatgtga
      361 taaagtatgt cagtgttgct tacagggaat tccagtgata cctcagcttt cttggactta
      421 ttataaatcc tttgttggaa ttattgcggc tggttcaata attcagatta gccctcatgt
      481 ttattaatgc actacatctg tgcaaacaac atgtcaagca gagagtttat tgtaattgcc
      541 tgagcaaaca gaacctgaaa gaagcaattt ccagttacaa tgtgctatga caagtaatga
      601 ggtaattggc attctgtcct gattacttcc accttccttt tcatcaggtc tatattgtgt
      661 gtgatagata gttttataag aaatgaaggt gtttgataat atggtctgct gctgcttaag
      721 gttagtgatt aaagacaatc ataattttct ctcagagatc ttattagctt taacattatt
      781 tattcatatg tgtaagatgt gggcccagaa tctctctttc actactatac ata
//
LOCUS       KCLJ01002026             322 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 225945cal ultra-conserved element locus
            uce-3030, sequence.
ACCESSION   KCLJ01002026
VERSION     KCLJ01002026.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 322)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 322)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..322
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="225945cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>322
                     /note="ultra-conserved element locus uce-3030"
BASE COUNT          105 a           53 c           50 g          114 t
ORIGIN      
        1 acccactggg aatattgatc caatctatgt aaatgtgtat tttataacta ttctgatttt
       61 acagattaga taatccttta taaaatcttc catgttgtaa gtactcctga attgaggagt
      121 aaaagagctc taatgtaatg taattatttc ctttcaggga atatggagcc attgatgatg
      181 tagatattga tctacatatt gatgttagct tccttgatgt gagtaatcta atcacagaat
      241 tacataatga acattaatac ccatttaatt tcgctacaca tcagactctc aaccactgat
      301 attcacaagt gggtgtcaca tt
//
LOCUS       KCLJ01002027             696 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 226038cal ultra-conserved element locus
            uce-7740, sequence.
ACCESSION   KCLJ01002027
VERSION     KCLJ01002027.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 696)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 696)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..696
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="226038cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>696
                     /note="ultra-conserved element locus uce-7740"
BASE COUNT          186 a          130 c          129 g          251 t
ORIGIN      
        1 ttcatggcac tctatgctgg ttagaaaatc tgactgaaag ttgaactggt gctttgtctc
       61 agaagctttg cttttagagc ctgggtaatg tgcagaattc tcatgcaaaa tctgagtaga
      121 aaacagttat gcatttaagt cactgtatat gatttaaatc atagaatgta cattagattt
      181 ttccaaaata aaatgcacag tttctttcag gcagaagcac cagttcatat tataatagct
      241 attgccaatc taatgaatat gtctttattt ctttctcggg ccttctgatg tctattcttc
      301 aattctctca tctctgatct tcaacctttg acctcacctg cctgatcaga tggtgtttcc
      361 taaaatcaat catgggtttc tctctgctga tcagcagctc attaaacgcc gcctcattaa
      421 ggtagtgctt catctcactg gagtctggtt cttctttaca ttcagtttgc tctttgctgt
      481 acctcagatg ccttcttata acaggttgtt cacttgaaaa aaaagactat gggtggcttt
      541 gctaagtaag ccatgtttgt ttttccagca gatgtgctgg aaatccattt tgggggttct
      601 tcttttttag aggggaaggt aatatgtttt gacaactctc ttaaaattga ctttaataaa
      661 ttaatgtgga gagagttagc taattgtcac tacaaa
//
LOCUS       KCLJ01002028             743 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 226151cal ultra-conserved element locus
            uce-6956, sequence.
ACCESSION   KCLJ01002028
VERSION     KCLJ01002028.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 743)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 743)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..743
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="226151cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>743
                     /note="ultra-conserved element locus uce-6956"
BASE COUNT          236 a          129 c          128 g          250 t
ORIGIN      
        1 gagttgatgt ttaacatttt ggcctttaag aaattatagt ttgacatgaa ttttaacttt
       61 cctggctaat aaaattatca tgatggaaca gcccaagtaa ataatagata caataactct
      121 tctttgccta ttgtgtgctt ttactattca taatttttag gaccacagat attagataca
      181 cttacgtaag acttaacgaa cagtaattat ctcttggcta aagcaaaagc ccaaacgaat
      241 gctaagctgc attatcgctt ggcttctgac atgagctgat aatcagattt tcttgcttaa
      301 atccatggtg cttgaacaat gctacccact gtctgtcctt ccagatatta cccttaatta
      361 gaaagaacag aaacacaaat ctgaattatt tcaaaatctg gtttccatgg tcagtggttg
      421 gaagggctta actttattac aaataaacct ggctttattt actaatgaaa tctgaaatgc
      481 tgggcctgta atagtagata gtctaatagt atggtgttta catgctgaaa aatcttgtgt
      541 gggcaaagta tgttgtaata aatcgttaag taattgaatt atgattcttt tatccaatta
      601 ataaagcaga aaaggagacc cataggaagc cctataccat agcttaggcc aagtaatgac
      661 acattgttct ccagccttgt tctttgtatg taggacttcc ttctaagatg catttggcaa
      721 atgcctgttt ctgtctttcc aaa
//
LOCUS       KCLJ01002029             604 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 226262cal ultra-conserved element locus
            uce-4384, sequence.
ACCESSION   KCLJ01002029
VERSION     KCLJ01002029.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 604)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 604)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..604
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="226262cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>604
                     /note="ultra-conserved element locus uce-4384"
BASE COUNT          208 a           76 c          106 g          214 t
ORIGIN      
        1 tcaaatatgc tttcatttta gggcagaagt gctaaatatt tggagcaata ccattgtaat
       61 gtgtacaaat gatgaagttg attttctgat tttccttgct agttatttag ttctgaatct
      121 gctattattt gtctaagcac agctgaccaa gcaaaactgt gttttaaagt ggctttatgt
      181 tttgataaat gtgatctggt tgaaaagtat tttccactga atgcagagct taatagaaca
      241 tgctgacata atagttttaa tgcattttgt tgaaaatgtg tgaacaacca gaatagcttt
      301 tgttccttca taattggctg taaaagtaga tggaaacata accattacat atggaaatgt
      361 gtgaagagaa agaaataaca tttctgttga atatattagg aattgcattt cctagtttaa
      421 aataagcatc tgaaatggat gcatcttttg aaattggttg tcaaaataaa aagccttaag
      481 tggaatgttt gtcatattat ttttatcctg agttaaagaa cacaattgct aaaggaaatc
      541 gtgcaacctt aataaattta attttaatat tttttgccca ctaagcagaa aaataaaagc
      601 actt
//
LOCUS       KCLJ01002030             414 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 226373cal ultra-conserved element locus
            uce-6957, sequence.
ACCESSION   KCLJ01002030
VERSION     KCLJ01002030.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 414)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 414)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..414
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="226373cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>414
                     /note="ultra-conserved element locus uce-6957"
BASE COUNT          120 a           73 c           97 g          124 t
ORIGIN      
        1 acggcaaggt cattccgtgc ttgcattgtc ctccagagag atccacatgc cagcagagtt
       61 aattacacta acagccacag aaattatatt ggcccaccac tggcctagtg agatgaatat
      121 ctccactcac agggggatgt taatggtatt tttattaact ggtgacctgt tgactgctat
      181 tagaatatag attgtatgca taaaccaggt cagggtactg aagatatgat tatagagcaa
      241 ttactgtgtt agccagtgtg gcttctaatc agagctggca aagagccttt ggaagcctga
      301 aaactgtttt tggagtccag caagaagaaa cagctttgga tcaaagtgtg tattgtgcct
      361 ttgcatcttt ctggaattaa atgtttgatt tttatgatta ggatgggcag taaa
//
LOCUS       KCLJ01002031             330 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 226476cal ultra-conserved element locus
            uce-6476, sequence.
ACCESSION   KCLJ01002031
VERSION     KCLJ01002031.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 330)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 330)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..330
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="226476cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>330
                     /note="ultra-conserved element locus uce-6476"
BASE COUNT           88 a           82 c           56 g          104 t
ORIGIN      
        1 gcttctatac aatatctgct gggcagacca ccaactcggg gagcgcagca gccgagccct
       61 ctgcgagtgc cttcctggct gccgaaaaca gagcttgtca aaaaaaaaaa acaaatccat
      121 aatggcctga ggctcctctc caatctattt tctgctcagc tggttttaaa tgaagttatt
      181 atgagtcatt aaaacacccg caagcctgtg gaagtcagcc aattacaatt ttaaatttag
      241 cctgttctct atcccattct cttgttttct tcttttgccc acatcaagcc gctttcggat
      301 ttttattatt gccaattatt attattatta
//
LOCUS       KCLJ01002032             619 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 226573cal ultra-conserved element locus
            uce-6397, sequence.
ACCESSION   KCLJ01002032
VERSION     KCLJ01002032.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 619)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 619)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..619
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="226573cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>619
                     /note="ultra-conserved element locus uce-6397"
BASE COUNT          221 a          101 c          121 g          176 t
ORIGIN      
        1 aaaagaaatg aggcagattc aaatagactg ccatgtatat ctcaggcaat gaaagcttaa
       61 aaatacaaac agtcgaatgg gcaaatcaaa tgcatttata gcatattttc agactcatac
      121 tctggatttt cagggcaagg tggaagagaa ttatctttta atactgagtt gctttaaatg
      181 tgaaggaggc aattgccaca aaagtctctt atttgctgct tttctggtct acacgtgtgc
      241 acacagagac acacataaaa aatcagcctg ttgtcttgca agtgttactt atcatattaa
      301 ttaaaatctg gtgacacgat aacaccagca gctgtgtggg aaagcgaggg aaattaacaa
      361 acgtttgatt tgttgtgttg ctaatgtgac acttattata caggtcacag taaaacaata
      421 cctcagccaa aatatgctaa tactggtgga gaactgttgc agttgtaaaa acattgatgt
      481 ttattataat gagacaaaat agcacattac ctttagcaga gtgaattgct gcttctcggg
      541 gcaaagtatc tctgaaagtt taataattca aaaccacaga gacagaataa agtgaaattg
      601 ttacacatat aaagccagt
//
LOCUS       KCLJ01002033             558 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 226680cal ultra-conserved element locus
            uce-2575, sequence.
ACCESSION   KCLJ01002033
VERSION     KCLJ01002033.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 558)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 558)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..558
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="226680cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>558
                     /note="ultra-conserved element locus uce-2575"
BASE COUNT          153 a          135 c          101 g          169 t
ORIGIN      
        1 cccccactgc cttcccagct ccaagcctct atcccaaatc ccaaacttgc actgcagcat
       61 ctccagaaca caaacctccc cgtgtgggtt gtttggagtc acagctctgt ttgcaaatga
      121 gcttgggggc tcactgggta aaaaaagggc atgcttggtg aatcccattt cacttcccca
      181 atgagctgaa aaactcttgg ataatgggtt atgagttgta gatctgtttg attgcattgt
      241 tgcaaagtgg gaattgtttt gcaacataga ttcttaatca ctgaggcatc tgtgattgaa
      301 tgtgtcgaaa attggttgaa attgaaagtt aactatactg cagacagctt attcttgtgt
      361 ataattgaaa ataaattcta atactcttct tgaaaagggc tgccaggagg aaatttccaa
      421 ccttgtcgtc tctcctccaa atccacaaat cttcccctct gatccttttt ctctccatct
      481 taaaaccaat ctctgcacat cactccctgc atcctcagcc ataaaataca gaacttgtaa
      541 atagctcctt ttggaatg
//
LOCUS       KCLJ01002034             728 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 226786cal ultra-conserved element locus
            uce-4110, sequence.
ACCESSION   KCLJ01002034
VERSION     KCLJ01002034.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 728)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 728)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..728
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="226786cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>728
                     /note="ultra-conserved element locus uce-4110"
BASE COUNT          253 a          144 c          121 g          210 t
ORIGIN      
        1 atcttagaaa caactgctat tcagaaagat gaaagcaagc aagctttcaa aggtacattt
       61 acactcacag acacatcacc cttcatcctg ttcctcagtg gtttcatcaa ccatacctga
      121 atgtacatta tgtcaataaa attctacata tatcattgat tttgcctatt acatgcatgc
      181 aatgaaaaag gaacttaagg ggtgactaag aaaagtaatt ctctttccaa cctgaggaaa
      241 ctttagacaa atttgccttt gataatcgac tgaacaagct gcactgcaag catcaaggga
      301 tggtgcaggg atatctagca ggtgctgcag tttatcacaa aaccgtctaa aataattgga
      361 agtgacaacc agcactacca caaatgattt attagtcttt cactcagctt ttcagcttcc
      421 tcagggccag aataaataat ttaccaactc tgtatcttcc aatcattaat tcttccctgt
      481 gcatccaaac tacatttaac tctgctgggt tcagtggaat taaaaacaca atatgaagac
      541 tttttcccca agtatagtat tatctgactt tatctaaaag taaaattgtc aatcaaaatt
      601 tgtattggtg atagaaggga ttagagttag caactagagt taagttacaa aatatctgca
      661 gaataaaatg aaagctaaac tgacgagata tcaacaatga aatgctccca ggggtcaggc
      721 gtgttctc
//
LOCUS       KCLJ01002035             616 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 226898cal ultra-conserved element locus
            uce-8030, sequence.
ACCESSION   KCLJ01002035
VERSION     KCLJ01002035.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 616)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 616)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..616
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="226898cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>616
                     /note="ultra-conserved element locus uce-8030"
BASE COUNT          179 a          129 c          104 g          204 t
ORIGIN      
        1 tcctaaatgc taactgccca acaacaaggc acctttccct ctccacccca ccctctgcat
       61 gacacaaact ccaagttccc aaattgatgg tgtttatgtt tgaaacattt ttctgatgtc
      121 tggctctgtc aagactaatt ttagcatttc taaagctggg taaaaataca gcctcattac
      181 tttgatgtca gagcatagtt tactattagt atattctggg gtttatcatt ttagtcatgt
      241 ttaacacagc tacagcaggc atgcactatt aaatctggct tattttacat tcctgtccaa
      301 aattatttat ttggaacaat ttcctctcta tcaaaagaca cagctaatgc tgagttttaa
      361 tgtgttattt acacacaaaa taacctattt acaactcagt atctgccgca gggagaatga
      421 atggggcagt gctcccttca tcctgttgta tctgagttta acaatctgga ttgctaatag
      481 aaccatttat cacagggtgg taatttattt tatgttagct acacaggtct ccctgcctct
      541 gatctatgga aatactttgt atataatgaa gttcaacaag tcatttggtg taaacatggg
      601 gaagccaagc tgcaga
//
LOCUS       KCLJ01002036             564 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 227011cal ultra-conserved element locus
            uce-2276, sequence.
ACCESSION   KCLJ01002036
VERSION     KCLJ01002036.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 564)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 564)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..564
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="227011cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>564
                     /note="ultra-conserved element locus uce-2276"
BASE COUNT          152 a          135 c          149 g          128 t
ORIGIN      
        1 gccctgggga agaagcctgg cagccatgac agcagtgcca tctggagctg tgagcagggc
       61 tgggggcaga gcacagctct caagctgaag agaggtgccc ggctgctctt gggctcaggg
      121 gaggaacagg agccactcag caaatggctg ttcaggacat tactgtgctc cttaagttaa
      181 tgagaaacaa gcactgccag aagaaaacat ctcttatctg ctttagtgcc acagtgcatc
      241 ggcttcagca taaaatttac agagcttgaa aatggggcat aaacattatg ggtaaatttg
      301 gcagaaaatg tgactgactc ttatctggtc atgaataaat aattttcaat taccagccca
      361 ggcattgcta ttatcccaca cagggaactc ctctgaagtt tgttttgtgc tcgagtacac
      421 aagcatgtgg gtggcaggag gggaggtgta ggctcaggca ggctgtgctg ttcccctgaa
      481 acatccccca gcaagcagct gccccagcat ttgcaggatg ctgctctcct ctcggtgtca
      541 tcatccccaa aagacaaact caaa
//
LOCUS       KCLJ01002037             586 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 227120cal ultra-conserved element locus
            uce-8006, sequence.
ACCESSION   KCLJ01002037
VERSION     KCLJ01002037.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 586)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 586)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..586
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="227120cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>586
                     /note="ultra-conserved element locus uce-8006"
BASE COUNT          197 a          105 c           96 g          188 t
ORIGIN      
        1 gaacagtatt tatttcctaa tataaacaaa aatactattt ggattggagg agcatgaggg
       61 aggagtaaga gaggattaat gtgctggctg ttccccactg gggccaccaa taacaatcaa
      121 ttccaaacag cagtcacctc acatcatcta acagcttgaa tcgtcgatat tcaaagattc
      181 tctctttttt gttcagatta aatatcattt aaattgcatc catttcgtca gagacataag
      241 gtcagaattg attgaatatg tactacctgc atataatgat ttccagtttt ttacaatcat
      301 gtgctaatgc tgcacagtaa tggcctatgg atgaagagac agatgtacta ccagtcattc
      361 gctacacatt tgcattaaca aatcatcatt taattgaagc ccatccaaca agtttatgct
      421 acttaaataa agttcctttc cataaaagat gctgcaatga cacatggttg ttaactgcaa
      481 ggtaaataaa aagtagtatt tattttcttg tcactggttt aggtaagtat taaaatgtac
      541 acttattaat ttgtattttg ctcagaaata aaccacctga catcta
//
LOCUS       KCLJ01002038             874 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 227227cal ultra-conserved element locus
            uce-15, sequence.
ACCESSION   KCLJ01002038
VERSION     KCLJ01002038.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 874)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 874)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..874
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="227227cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>874
                     /note="ultra-conserved element locus uce-15"
BASE COUNT          282 a          168 c          153 g          271 t
ORIGIN      
        1 tacactatat tttattatac tggatttaaa ggaagataac acaattatgg ttaatttgct
       61 tctcttcttt atatgtatag tgtcatgacc caccacagct ttgtcccatg agatattttt
      121 aaccaaaaag aaatccacaa gaaactctcc ctaaaaattc cattaataac ctcttgtagc
      181 atgtataggt tgcagggtct ggaactaaga atgttttaat ctcttcagca aaacaatgtc
      241 tcataatgat gtacaggact attgctgcac tgatgaagaa tcatacataa ttcagcacct
      301 ttcacttggc accactgtga tatcctcatt agcagtggct cacagtggct gtcagatggt
      361 gtccatgcga atgcaggcat tatattgtct ttgagatgtg cagctgcttc catgacactg
      421 ccagtatata aaaacatgac gccagtttgt tttatttagt gctaaacctt ccagtttgta
      481 aaaacaaggc tgacacagag cctgacatga ggcagtgaaa ataattagct ctcattttct
      541 cagcctccta tttccttctc cccgctgtgt tctctttcca ctaaaccacc acatgtcagt
      601 cgaaatggga ggcaattagt gggctcattt cagtccccac aactgtgctg aaaagaaagt
      661 atttatgatg gcacaatgaa cagctgaaag attaaataac atttgccttt tgaaaagaaa
      721 atgacttcta gctaaatggg caatttttga ttattctcaa acaagcttag agtagttggt
      781 ttttaaaata caagaaagga aaatgagtca tttttaggtg aaagaatcaa ataaaacttg
      841 acacagtaat gcaaataact gatgttttat tgca
//
LOCUS       KCLJ01002039             668 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 227339cal ultra-conserved element locus
            uce-6183, sequence.
ACCESSION   KCLJ01002039
VERSION     KCLJ01002039.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 668)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 668)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..668
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="227339cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>668
                     /note="ultra-conserved element locus uce-6183"
BASE COUNT          175 a          126 c          104 g          263 t
ORIGIN      
        1 tttgaaaatc gtgatcagag ttaacttttt ccttgttttc tcttccaaaa ccacataatc
       61 cactcttctg cacataactt ttctctcaga tggttgaatt atttattaat tattgtgtgt
      121 ggttaacaag ttttctcaag gattgctttc ttttaaacta atgtcatgca tgtttgtgtg
      181 cattctagtt cctgtcatgt tttctgactc tacaatgttt attacacttc agacaaatac
      241 cccagggaga ttatgtaaaa aagccgggag aggccgactc tttttatagc gacatgcctc
      301 ctggagtcag cacaaactct gcatctagtt ctaagaagag gtctgctttt ctgtcgcatt
      361 ttcagatttc tacctgttcc atcacccatt attccattag tcagaacatt tcattgtttt
      421 gcagcaggtt tgactctttc ttctttcttt gttttgaaat agcatccttt ttgctttgat
      481 tactgatttt tctcctgtgt cctagttgct gattagtatg attaggccag aatcaaaatt
      541 tgcattttaa taaaattttc attacatccc taattgattt caagtagact gtaataataa
      601 ttagtggctg tttacatcag tgtcatgtaa tcaaagaaaa ggaacattgt ctttcttcaa
      661 taatagtt
//
LOCUS       KCLJ01002040             442 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 227448cal ultra-conserved element locus
            uce-4075, sequence.
ACCESSION   KCLJ01002040
VERSION     KCLJ01002040.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 442)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 442)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..442
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="227448cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>442
                     /note="ultra-conserved element locus uce-4075"
BASE COUNT          160 a           73 c          108 g          101 t
ORIGIN      
        1 aaaaagctcc agctccttgt actgtagcag gacttgcaca ttgcaaaaga ggaggagagc
       61 gcagtccagg gagaggttag tgaaaaatta gtagtgtagc cattgagaga agctgaactg
      121 tcataaagtc ttacacatgg agcgacggta gaaggccttc attttgtctt tttccttcgg
      181 tctgttcctc aaaaagggca gtcttttcag tgcacccact tttatgtcat agcatgagga
      241 aaaacggaaa cagggaaatg aaagaaaaaa agggagaaga acagatggaa gttaaatgtt
      301 gaaactaagg acagaaatga atgtcgagtt taagctaggt aaaagctatc atgggtgata
      361 attgaaagta cactaaacag gaaaactgca ctaggaaaac ttccatagat cactcaaatg
      421 cactgacaat tacagtgcag ag
//
LOCUS       KCLJ01002041             681 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 227560cal ultra-conserved element locus
            uce-5221, sequence.
ACCESSION   KCLJ01002041
VERSION     KCLJ01002041.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 681)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 681)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..681
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="227560cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>681
                     /note="ultra-conserved element locus uce-5221"
BASE COUNT          206 a          135 c          101 g          239 t
ORIGIN      
        1 tttttaaatt tcattacgga taagaagtgt aacaattttt aatataaatg taaggcttcc
       61 aagaatagta ttcttcaaat gacagggttg aaattaagac agaaagtctt ctatatattg
      121 cctgtaacct taacttattt taactgctga caacaaccca gaaaagaatc tgggttttac
      181 tgaaaatgag ataaagaaaa agcatcttta tgctgaaatt gcagaattta aaacctgtga
      241 tcttgaacca tattaactaa tgaaagatta tcctaaatga ataaaagaac cttatttctt
      301 atgcgctcct ttttggatgc catgtcatca cacttgtcct ctttacccag tttgtctact
      361 gcctccacag tgaagctgta gttgtagttc cctttctttc ctctgtcttg gttgtatcct
      421 ttcccccatt tcagctcttc ttcattcctt ctcataaact tgtcaaactc atagtgagtt
      481 ctatgctttc tgccatcatc caatcgatac ctttgtcttt caggttcttt ttctcgaaat
      541 cttctctcca aatctctttg ctctttgtca ctatcatttt gtgacctatg agtatgtatg
      601 aagagaaaga aaatccaagc agttaacagt aaaaaggagc agaaagacaa aagtcaaagc
      661 cttcctttga cttgtgtaga t
//
LOCUS       KCLJ01002042             427 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 227668cal ultra-conserved element locus
            uce-2834, sequence.
ACCESSION   KCLJ01002042
VERSION     KCLJ01002042.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 427)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 427)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..427
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="227668cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>427
                     /note="ultra-conserved element locus uce-2834"
BASE COUNT          163 a           66 c           93 g          105 t
ORIGIN      
        1 attgaatttt ggcggatttc agagcatcta ttcatgtctg tcatgccatt aaaggaaaag
       61 tcagaattag aggacgcaca tgcatcacac tcccatatgc aattcattgc tgtgaaatac
      121 agagagacaa gcatgcagat tcatatttat ttgagaattt tagttgtgaa gcaagacaca
      181 cacaattaaa gggtaacaaa ctcaattcac agcagagtgc agaaaaaaga aagtacagta
      241 ctaactctct gagaggattc aattttcatc atgtaccttt gaatgtcaag ttctgaatga
      301 agggagacca acatgcactg caaaacctgt ggatcaaaga gagaaaagaa ggggagggga
      361 gagataattg ttaacaggag gagaacaata gaaattagaa taatgtgtac atactgaaag
      421 tatactg
//
LOCUS       KCLJ01002043             414 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 227776cal ultra-conserved element locus
            uce-785, sequence.
ACCESSION   KCLJ01002043
VERSION     KCLJ01002043.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 414)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 414)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..414
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="227776cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>414
                     /note="ultra-conserved element locus uce-785"
BASE COUNT          152 a           77 c           44 g          141 t
ORIGIN      
        1 agctctgaag tatagcaaaa cataaattat tacaaaatta acactataaa aatttatttt
       61 aagaatattt ctaaactcaa agggtctagc cttgtttata attgcttaaa catttttagt
      121 cttaaaattt gccttaaccc ttcttttttt aaaaaagaaa gtagtaataa tctccctatt
      181 tgcagtctct cgcccaagat gtaaataaac cagcatataa gtgcactttt aacactgtag
      241 aaataaaaat taactcctct gtactattgt tccagtacct agtattggct tcctgattaa
      301 tattttatta aaaaattatt cagtaatcct ataagaaaca ctgtcagtgc aattctatta
      361 atgcaagcca atctgctcaa ctcctaaacc caaactgctc actgaagtta tcaa
//
LOCUS       KCLJ01002044             767 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 227883cal ultra-conserved element locus
            uce-2349, sequence.
ACCESSION   KCLJ01002044
VERSION     KCLJ01002044.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 767)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 767)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..767
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="227883cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>767
                     /note="ultra-conserved element locus uce-2349"
BASE COUNT          230 a          127 c          132 g          278 t
ORIGIN      
        1 gtagccacac tgtatttatt atgaatttga gaaggaagaa gaaattgctt cagcactgcc
       61 tccttttcat acttcatatc tctaaaagta gccagttaat tacattccat ggttactgct
      121 attgtaatgt gtgcttattt gaagtgcaaa gataataatc gattgtatac tcttgactac
      181 actattaatg gtttcaatac ccacattgtg tttacatttt actttataac taacacttag
      241 ccattgtggt tttaacatgt agtaattcag tgaattctgt aatgcccttg ccatttcatt
      301 ctgcggtatt aagtgttgtt tttctaggaa ggtcttgaaa tgtggggcat tatgtatgag
      361 ttatgctaat ttgttagggc aatgaataca ttaatttcat tagtaaatgg cctcaaagca
      421 ataattacca gtgtaggtgt gtcagaaacg atcatgttca gttttgccag ttaattatta
      481 agattttgtt ctaagggacc cagatttgac atccagcttc aatttagcca taaataaaag
      541 tctgaagtat atcggatcta gccaagaact tattttgctc ttagaaattc ttgcattttg
      601 tctaattgtg actgccaata agatgccaaa ataattagtg ccagtgctat gaggtttata
      661 ctatacctcc caaaaaggca catcataatg aaaatagcaa ttgtgctttc tcattcctct
      721 catcttgcct tatgttacag aatgttgaat tattcaatgg cagtatt
//
LOCUS       KCLJ01002045             578 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 227991cal ultra-conserved element locus
            uce-5091, sequence.
ACCESSION   KCLJ01002045
VERSION     KCLJ01002045.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 578)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 578)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..578
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="227991cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>578
                     /note="ultra-conserved element locus uce-5091"
BASE COUNT          157 a          132 c          112 g          177 t
ORIGIN      
        1 tgacaaccct ttttatgcat ttaattcatt ctcaatttct cataatcagg agaaaggtgt
       61 cccctaaggt taggagtgag cttgtcaaaa aggcagcgta aatttgcaga ggtaatcacc
      121 agtctatctc ctttccccac tgtccatgga actattaagt aatatcactg tctaatcttt
      181 tttgtactta tttattttgc agcgagaaac tagtgttata aacaccccta ctgtcaaaac
      241 ttgtcatcct cattacctca aggcgggttc catctcagtt attctaattt catagtttct
      301 cgaatttaca gccgctggaa attgagtaca aaatccatta tcatttgtat attttaatta
      361 tgcaaatgag gcagctcagc tgctctggcc gggacctgca gggatgccta acttcagtct
      421 gggtgattac aatttatcca gtcgagtcac tttaattgta acaagctaat tacattgttc
      481 catttggttt taacaaaaga aaaggagact gatggcaaag gccccgcgct ccctccgcgg
      541 ctcagcgagg tgagcgcggt ccccacgcac ctgcaggg
//
LOCUS       KCLJ01002046             756 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 228097cal ultra-conserved element locus
            uce-921, sequence.
ACCESSION   KCLJ01002046
VERSION     KCLJ01002046.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 756)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 756)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..756
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="228097cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>756
                     /note="ultra-conserved element locus uce-921"
BASE COUNT          213 a          159 c          140 g          244 t
ORIGIN      
        1 agctctgtgc cgttctccac tcccgctctg ctttgccttg gggtaaaaat catgcctggg
       61 attggatttt ctagtctgca cattccatct gagcgactcc aaccacttgt ttgagcatcc
      121 tgtaggaggg atccccacat ttctctgttc ctgtatcctc atgcttgttg gtttaaatac
      181 aacaattaac tgaggatgac aggaagacac caaacaggta aacacaatcc ctttgaggag
      241 caggaaaaag ccacagtttg aagaaagtaa caaaggctgc atttgtgtat tttgctccat
      301 ggagctgaaa atatctagta aattgatccc gtgggagtaa taaatacaca ttactttatc
      361 ttgtacttca tgtcctatac ccctgagcct tgatagaaca acaccactta atagacttaa
      421 aaaaagagta attacagtca ttggttgtgt gatatttcag cccttccagc cctgcctgac
      481 cttctaattt agctcaccgt gtctaactaa tgcatttata ttcatctttt atgaagcatg
      541 tgtagtacaa aattgacttt gcagccttta gcaagctgtc ttaccaggtt tgggatctgg
      601 ttagtacagc gtactctata gcatatgtac atttacagca gaattctgca tgcatatggt
      661 tctgatcatc tattattttt atccttttgg aaataaattt tttaaagctt ttattcattg
      721 cggcattatt tacagctaaa catgcaggca ggaaga
//
LOCUS       KCLJ01002047             662 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 228206cal ultra-conserved element locus
            uce-6444, sequence.
ACCESSION   KCLJ01002047
VERSION     KCLJ01002047.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 662)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 662)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..662
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="228206cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>662
                     /note="ultra-conserved element locus uce-6444"
BASE COUNT          226 a          131 c          122 g          183 t
ORIGIN      
        1 ctgtagaatt cctgagatta tcaccttcta accagacatg tcctttaggc acctataagc
       61 aagattgaaa tgtaaagaaa ccagaacaga agcacagttt gccttatcct gatttctgtg
      121 ctctgtattt catgactgtg taatgaacta aaaagaccca ttgccagatt tagagggatg
      181 agaaggagtg ctccaaagta tctgttctat catgtgctca aaaaccaatg gtttgcaaca
      241 aaaaacccaa aatgaagatg caagaggtta gaccaatgtg acagggtcat taatttaata
      301 gacttcaaaa gaggtcatta ggatgttgac tgaaaatctg ccctcctgtc gcagtaacag
      361 catgaacagg gcagccacac actcatcaac atcctggggc cagcaccaag gctagacctg
      421 ttagtagatt catgatgaac taactggtaa ttgattgtga catcaattac gaataatctc
      481 atcattttat cggagtaggc ttgtcaaagt tctaattaag atcacagttc attctatgtg
      541 caggcagaat ccacaacaca ttatattgca ataatgatga tcacaaaaca gcaaatccct
      601 ttttataatt tgaaaattaa tgatggtgac cttatactat atgacaaaga cctttcattg
      661 cc
//
LOCUS       KCLJ01002048             770 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 228316cal ultra-conserved element locus
            uce-98, sequence.
ACCESSION   KCLJ01002048
VERSION     KCLJ01002048.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 770)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 770)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..770
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="228316cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>770
                     /note="ultra-conserved element locus uce-98"
BASE COUNT          236 a          161 c          143 g          230 t
ORIGIN      
        1 tatatgggag ggaaaggatt aagtgcacac aatgtacttg aaatatatcc acagcttttt
       61 aaaagccgaa aataaaagct tttaagatat acattttggg gtctaaaagg agaattgata
      121 cagaaagcta acctggcatg attttagggg atatatctaa aaagcctaat cattgataat
      181 tcacaatttg tgagcctggt gggatttcat gcagagcact agcctcacta aggtaattgg
      241 tgctattgaa acaacactgg ctcagcagca tgctgctttc ttcctcgcct ctgggcacag
      301 gaaggatcaa tatttgttag gattgcttct tgttccaaca atgtaagatt tacaatactt
      361 gctaggattc tcactttgtc ttcacacaac tcatcagtgg aacccaatta ctaacctcag
      421 acaaacaaca ttaacatgag cctctatgct tctttattgc ccttcatcca agtctcattt
      481 cagggtcttc aggcagtgcc actataacag atactacact ttaaagtgtg ctccaaggaa
      541 taaattttca gtctttcatt actcgtacct tgatttactt catatcatct tgccgctata
      601 gacaaagata acacactgta aattacagcc atcctgtctt gtagtttcag aggtaggggg
      661 aaggcaggga gtgatgcttt cgcaccacaa ttagcaccgg gcaccacagc ttcattgcta
      721 tcatcactag tgactgaaac ttgttttatc aaagatgcaa agccattatt
//
LOCUS       KCLJ01002049             630 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 228428cal ultra-conserved element locus
            uce-3919, sequence.
ACCESSION   KCLJ01002049
VERSION     KCLJ01002049.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 630)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 630)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..630
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="228428cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>630
                     /note="ultra-conserved element locus uce-3919"
BASE COUNT          208 a          115 c          117 g          190 t
ORIGIN      
        1 tgaatttctg atgtgatttt acttttggtc caaagctctg ctagacccag ttgattctaa
       61 aataaatgct ttcaggaagc atattggaat aacttggaga tttcttctgt ttctactaat
      121 aaaggaaagg attcaagcca catccgtact gttgaatttc aggacaaggt gtgcttgttc
      181 taccaaggat atgccaataa ttcaaggcaa tcagcaggtt acattacaga ggaaagtctg
      241 aaccaacaag ctgtacaaac aaaatagcaa tcagaagatt taatgcattt ctgatgtaca
      301 tttaaggcat tgacactggg ccacagatgt acatgtgttg tgttttatct tgttgagata
      361 tggtttgtga gaacctatta tagcacatca tcacccacaa gtactgggcc cagcaaagga
      421 aaaattccat cacacattac tcctgcagat atattagaga aacaaattgt acttggaatt
      481 gaaaagtcac aggcttattc tgtcttaata aattcctgcc aaaaggctaa gtgtaaaact
      541 agaaatactt cccaaatgtt gttactgtat tatcatctct gacatctcaa gggctgctag
      601 gggaatatca tttcagagtt ctcacaataa
//
LOCUS       KCLJ01002050             748 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 228535cal ultra-conserved element locus
            uce-7223, sequence.
ACCESSION   KCLJ01002050
VERSION     KCLJ01002050.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 748)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 748)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..748
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="228535cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>748
                     /note="ultra-conserved element locus uce-7223"
BASE COUNT          251 a          133 c          113 g          251 t
ORIGIN      
        1 gagtatgtct ctgataaatt ttatttaaat ataaaaggta ataggcagaa aatgtagttt
       61 gcttacaagt ttcctttatg gttgtttgac tgtcactttt ctgcagattt atgataatca
      121 tccttgcaac aaaaacgttt acttcactgt ctaaataata aggtaatttg ttacagctaa
      181 ttactcaagt gcttccttaa tctcaattaa aagattcagg cttattttct acatttctgc
      241 agcagtatgc tccagaatat cttgttaatg tattcccaat cacatatttg ttaaggaatg
      301 catggtccat gcaaaactga aatgctaaaa tacatagctg caatcttaaa caatgattta
      361 ttgtgacatg ggatgtggga catttccaca gcttttgtga ttgcagtaat gaagctgtaa
      421 accaaatagc atgaaatgaa gcaaggcctt acaatttaat cagctcgtaa acagatctac
      481 tgcatcaagc aaatgacatt attatccatc cgaagtaaat catgctaatc tcaggagata
      541 aaatcaacat cattaatggt cacatgtcat attcatcaac actaaaccat cccttttgac
      601 agattaatcc taactacagc tcccacgatg tatggtaata gggcttgtag catacatttc
      661 attcagcagt aaggctaacc agcactctta gtctgctatt acaaataatt tttttattga
      721 tttacatatt ttaaaatgca tttaaggt
//
LOCUS       KCLJ01002051             623 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 228648cal ultra-conserved element locus
            uce-3407, sequence.
ACCESSION   KCLJ01002051
VERSION     KCLJ01002051.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 623)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 623)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..623
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="228648cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>623
                     /note="ultra-conserved element locus uce-3407"
BASE COUNT          190 a          125 c          105 g          203 t
ORIGIN      
        1 catcaattag gagagcacac aaactcttag aaagcactgg agatttattt tgttgcctga
       61 aacatggttt ctaatctgga aatacttcat ctctgcagag ctgtgttctc ccacagtgat
      121 ggagaaagct ttgcatctgt tcaggttaat gtgctcctgt ttctctgctg acatttaaat
      181 tcaaggatac acagcattct tcaaagcttg attggcacac agaagactta gtgttaatct
      241 cctagtctat tactactgtc tttcataatc tacatatatt ttacaaattc tttagtaaga
      301 aaggctgtca gagcaaatga tgcatcaaat tcaaacaggc catcaagatt gctaatggat
      361 tttaatagca gctattacag cataatggta ttttcccaac agctgtttgt ttataaaatt
      421 ttcagtttac aagaccttta tgtccaatcc caggagacat ccgtcaattc atttataatc
      481 atttggttca acctacatgt aaatgctgtc ttatatatgt gcagaagaca tgagcaacta
      541 ccacagcaac gggggaactt tacaaactaa actaattagt gtgtgccttt tgactttagt
      601 aagtgcttta ccccactcct gca
//
LOCUS       KCLJ01002052             565 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 228760cal ultra-conserved element locus
            uce-2576, sequence.
ACCESSION   KCLJ01002052
VERSION     KCLJ01002052.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 565)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 565)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..565
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="228760cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>565
                     /note="ultra-conserved element locus uce-2576"
BASE COUNT          179 a          101 c          139 g          146 t
ORIGIN      
        1 gcttttaagg ctttatgaaa tgtatggtag cagagagcag cagacaactt tgtttttaaa
       61 caaagacccc aggataaggg gcaatgtttt tcccctcaca ggtgatggag tacgtacaaa
      121 gaatgcagcg gataatggca gtcctgtcct ctgaacagat ggtgatggtc ctgttgctag
      181 gataaggcct gaagaattta gtttttaatt ccacattatt tgcctcagtg ccatgaatat
      241 ccctaggttt cctcgggcaa aaatacaaca aatacacaga aagagaaaga gaagtgacat
      301 gcggatagaa aaggagacag agcacgggaa aggactggag ccaggtcaat agaagctttt
      361 gggaaaatgt ctgctcagct gtctgcaatc acctgggttt gaaaggcagg caggaaggaa
      421 gattggtttg gcatgagaac gaggcctttg atgctttaga taccacagag aaaaatacgc
      481 atttcttccc attagaagtc tgttgacttt cctaattaag ataaacatgt ttctgaagaa
      541 gttagctctc acagtactac atttg
//
LOCUS       KCLJ01002053             410 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 228872cal ultra-conserved element locus
            uce-2100, sequence.
ACCESSION   KCLJ01002053
VERSION     KCLJ01002053.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 410)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 410)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..410
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="228872cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>410
                     /note="ultra-conserved element locus uce-2100"
BASE COUNT          141 a           66 c           58 g          145 t
ORIGIN      
        1 gggggaaatg ttagtcctta ttctttctct taaatcagtg ccaaaatcaa ttttgaaaaa
       61 ttgtctcaaa gttgctttca actccatctg ggtgtttctt tactgctaga atatcacccc
      121 atacactgga atcgttatta catcacacta atctaattta aatgcatttt tactgtactt
      181 ggtttaatga atgtggaatg tgtcactatg aaattgcacc attaatttga taaataggac
      241 ttgaaggtat aattttttcc agcattgcag actaatgaag ctaaaataca tatataataa
      301 gaagtgtaaa taataaatta ttcttaggag caaaaaaatt aattagatct taccacaaat
      361 tgcatctcat ttttttacac tactgacttt caaactagtt ggaacatgac
//
LOCUS       KCLJ01002054             562 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 228981cal ultra-conserved element locus
            uce-6185, sequence.
ACCESSION   KCLJ01002054
VERSION     KCLJ01002054.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 562)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 562)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..562
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="228981cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>562
                     /note="ultra-conserved element locus uce-6185"
BASE COUNT          205 a          107 c          134 g          116 t
ORIGIN      
        1 gtttttattg ctggggttaa aaaacatgaa tttgcattac atcctggctc ctgctgtaat
       61 actttagtct tgtttctctc tcgtcccctc tccagaacaa ctgatgctat cacagcctga
      121 tttaatttca aagacggatt gtgatttggc agtcaaaaaa aaaaagccaa gttaatcaaa
      181 agtcaccatc tgctgtgttg ccatggggat attcctcccc aataaatgtg ctctttgcca
      241 aaatcacaga taacagcact ataaagggtg ggaggtggaa atcaaagaaa gaagttccga
      301 cactaaaaaa tgaaagagca agagagaaag agaagaagtg ggataggaag gagcatggac
      361 tgctgagaaa aatgacaaat ggaccaacta gagactaaca agcagctgag ggtgacaaag
      421 tgatggagga tacagacagc tggaaagagg aaagaggaga gacaccgaga cgctctgcca
      481 cataacacac ccaaacaaca agcagagata agagaattgc cctcaaagcc ttgtctcagg
      541 ggaaggggag aaaactgaag ca
//
LOCUS       KCLJ01002055             790 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 229089cal ultra-conserved element locus
            uce-937, sequence.
ACCESSION   KCLJ01002055
VERSION     KCLJ01002055.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 790)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 790)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..790
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="229089cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>790
                     /note="ultra-conserved element locus uce-937"
BASE COUNT          203 a          176 c          182 g          229 t
ORIGIN      
        1 tttggtagcg atattccctc ctcgtcttta tgaccgaatt ccctgtgttc ctgccgtgtt
       61 gattgttggg ggcattgttt tgatttgttt gtctctcaaa aatgacctaa agaaatctgt
      121 tgttaatcac atatcaacga gggagggatg attagttaat aaaaaccatg ccttgtgtct
      181 gtggaccaaa tggctagctc tggttctcag tgtgcccttg aaagactgtt cccatccctc
      241 agtgatgtag ccgcagctct ccctgaggaa tgagaagttc actattcact ctgtgcttgc
      301 atcacccttt ccaacatgtt cccactgata cattaaagga attaattgct cataatgatc
      361 tcaccatctg ttaacagagg ttcataccta caggctggtg gcatgtggtg gtcctattca
      421 gaaatcaata ggcaatgctg ggggaacgct ttcccacatt gccttccatt gcactctgaa
      481 aaggggagga gagctcagtg ttggccatct gctccttgtc tttctgtgcg agagaccttg
      541 atgcagtcca gcctggctct gatctgactc cagtctgatt ggaatgtggc tgatctgaga
      601 gcctctcaaa gctgtgaaag tgagtcaaaa ggagatcccc attgtccagc ggggctgaaa
      661 gaaaatgatc actttaaaat tcataactcc caggtgcccg ccatctattc atgggaaaaa
      721 ctctctgaac ttctcttcat taaaaagaga gggagtccag ctaaaaagag agaaaaggaa
      781 gtagtttgtg
//
LOCUS       KCLJ01002056             600 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 229199cal ultra-conserved element locus
            uce-3884, sequence.
ACCESSION   KCLJ01002056
VERSION     KCLJ01002056.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 600)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 600)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..600
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="229199cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>600
                     /note="ultra-conserved element locus uce-3884"
BASE COUNT          171 a          145 c          108 g          176 t
ORIGIN      
        1 aaagtgctga agcccaatga tgagctctcc tctcacatca acatttatat ggaatagcac
       61 tggtttgtag agattgctct gcctggattt cagccacaga gaagtgcaga gataaaaagt
      121 cagcctcttc tcatgttatt cccagtgaag gaataacaga aatgaagaca gttgtctcct
      181 gttcagctgt tttcttcatc ataaagtcat acaagcagat gtaacacaga aacacataca
      241 tgttccgatg tgaaggcaac cagtctggga atagctgcca ttcctttttc ttttacttct
      301 gggaacatct tgaaacgtgc aatcaacata gcatacatgt tagatatggc accacctgga
      361 gtccacagta atatactgtt actttttcta ttcattgtaa tatcatttca gacaagtctt
      421 gctacagtat aaatcacaga ttcttcttcc cgatgcctgg gctgtgtact actacacaca
      481 aaaaacactg gtgcttcctt tcaccctcat tctactcctt cagtccagtc ttagctttcc
      541 atgtgccatc aaggtgcccc cacaaggggc cctaagggat ttccaagtgc gacctaatct
//
LOCUS       KCLJ01002057             692 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 229307cal ultra-conserved element locus
            uce-7972, sequence.
ACCESSION   KCLJ01002057
VERSION     KCLJ01002057.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 692)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 692)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..692
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="229307cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>692
                     /note="ultra-conserved element locus uce-7972"
BASE COUNT          164 a          209 c          141 g          178 t
ORIGIN      
        1 aaggcaaccc agctccctcc tagtgcattc ctttccctcc acctcccaag ctctttgcgt
       61 gtgtcttgtc atattttctt cagctgctaa ttgtctggac tgagagattt taaacagcca
      121 cagcttagga aaagtgaaac ctgtctaagt gactattgca gcctgtaagc ttcgtgctgc
      181 cgggtaaaat tttccagggg aagtgctctt ctgatagttc tcgagtcact aagtcaccct
      241 ccctcctcct ttccccacca cacacactcc ccttgaggcc tgaatgcact tgtggcaata
      301 aaacattcat gcgacttgga attttaacac aatgccattt ccctagttta acctgaaagg
      361 aatgcactag tcacaacaga ctacatcatc ctgccattaa gccctgccaa ggaaccgctt
      421 ttttggctgt gctgggccag cgttgacggg aaaggagtac acagacccac acacagagca
      481 cagaggggcc acctctgctt cctcagcctt ctccagcaac acccagctct taaccatgac
      541 ccctggcctg tgtcagcact gtgacagccc tgtgatgcat gtgtcacttc aggacttctg
      601 cagagtcaca acactgagca ggcaactcct gcctttcact gacttgctgc tctgtctcaa
      661 cacgcacttg aacatctgcc agagggtggt tg
//
LOCUS       KCLJ01002058             502 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 229418cal ultra-conserved element locus
            uce-4314, sequence.
ACCESSION   KCLJ01002058
VERSION     KCLJ01002058.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 502)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 502)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..502
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="229418cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>502
                     /note="ultra-conserved element locus uce-4314"
BASE COUNT          149 a          106 c           90 g          157 t
ORIGIN      
        1 tatctcttcc ttgtacagtg cagttttaaa tagtgttttc cctttcctaa caaaaccata
       61 gactttccag tgattatctg ccatctgttg atttcagtac ttcaattgct tcagaatcct
      121 ctggaaaaca actcatgtac attcaaaggt agcctcagct gagcaagtgt ccagctaatc
      181 cccttaacac acagggacaa ggctgccacc agctctaatt gattctgaaa tgaatctgta
      241 tagaaaatta gaaggtttgg attcccatgt gagcttcaat aaagggccag gatgtaagcc
      301 tgacagctga atagattcat aaatgaaaat ctgataagca gcttaaaagt gtacttaagt
      361 ccagaaatta tttgaatgct cttgttgtca tctagttaat tatctctgaa gatgagttct
      421 tgtggaggag aagatacggc agcctttcac agccttttct catcacatat ttattaaatt
      481 ccaccctcct tgccagtagc tg
//
LOCUS       KCLJ01002059             898 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 229525cal ultra-conserved element locus
            uce-2054, sequence.
ACCESSION   KCLJ01002059
VERSION     KCLJ01002059.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 898)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 898)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..898
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="229525cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>898
                     /note="ultra-conserved element locus uce-2054"
BASE COUNT          319 a          165 c          138 g          276 t
ORIGIN      
        1 ttcccttgtt tactaacaca atttataaca gcattatatg gtgtcattca gaacacacaa
       61 cattcatttc atattgatta agcattttaa accattttat catattttaa aatacgttca
      121 gctccatttt ttgatacagg caaatacaac agatattaag catggaaggc atcatgagta
      181 gatcataaaa caagtacttt ggccaaaacc acagggcatt ctatgccttc aatcaaacca
      241 cggcaattaa tatgaaattc taaatacaga atataatgcc acataaatag tataacagcc
      301 aagtcctgtc taagaagcca tatgtttttt cccattgttc aaaaaaagga gatgacttcc
      361 cgtcacttat gtttctgatt agcaaggtga tttatgccac aatcactaaa aatgccagca
      421 agtgaatgag aaaatgcata gtgactgcac cagatgtgca caataaacag gaatcccatt
      481 gtaatctctg gtacttagtt tatatgaagg taatgtaaga aacactcttg gatatggcaa
      541 agtcactctt tttttacatt tgactataaa tgatatgaaa taaattgtgt gttttatact
      601 ttatggcatg catacattga taaattaggt acagttttgt atcccaactt atctacaaga
      661 caaacctggc taagatcatg gggattaatt gcttcagaag tgtgaaatgc agcttttcca
      721 ttcttttctg cacactcagt gaagaaacaa tgattaatca ctgtttaact attctcctga
      781 ggatctacaa gattgccaaa gcaggactta tcctcataaa tccaaaaaac acaggtttag
      841 atttgttgcc aacaactgaa agaacatgaa ctcagagcca ttcgttatca gattaaaa
//
LOCUS       KCLJ01002060             509 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 229637cal ultra-conserved element locus
            uce-7161, sequence.
ACCESSION   KCLJ01002060
VERSION     KCLJ01002060.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 509)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 509)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..509
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="229637cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>509
                     /note="ultra-conserved element locus uce-7161"
BASE COUNT          195 a           78 c           85 g          151 t
ORIGIN      
        1 atgagctgtc cacagtgcat ggaaaaaaat ataagatata tttagaacaa tattttaatt
       61 tgcaatactt gattagatgg aaagaatgta atgtttagaa aatgtgatta agaagcttaa
      121 gtgcacagta tattacatga aaattctgat cataaagaaa ggtaatatct actcaaaatt
      181 ataatttctg tacttttgaa atcaactcag caagaattat ctacccatat caaattgtag
      241 cacttgtcaa aatcaactgt aaagcatctc aagtgctctt ctgaatcaac aaaacagatg
      301 tatagagatg tgaggttgca ctgaaatgga aataaaagtg aactagatgc cagtcattgc
      361 ccttaatctc ttgaacccgg cacttaacac agaggatacc acaggtcttt gggacactgt
      421 ttagaaggcg aagaaatcaa gacttgaatc ttaatagcat atgcaaaaac actctataaa
      481 attattttct ttctgctata gtggaatat
//
LOCUS       KCLJ01002061             965 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 229747cal ultra-conserved element locus
            uce-1469, sequence.
ACCESSION   KCLJ01002061
VERSION     KCLJ01002061.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 965)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 965)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..965
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="229747cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>965
                     /note="ultra-conserved element locus uce-1469"
BASE COUNT          309 a          175 c          164 g          317 t
ORIGIN      
        1 agcgccttgg tactagagga ttagagtact gtacacagct ctagcaagca gaatgaataa
       61 ttgaaatcca gtgcttttat gcttgactga aaaaaaccaa tatttcatgg cacataaagt
      121 tattcagctt atttgcatta aggttgaatg atcaccactg accaaaacag aagcaatgat
      181 ggtaccttga tgtaagtggc aaagaacata cataaatatt cttaggaagc aagatgtacc
      241 tacatttaat cagtacttat taaaatttta ttccctatag ttattcaaca ggatctgtgg
      301 tataaaaaca taattacaaa aatcagattt gagctcattt gacaacagaa gggttttatg
      361 gtgacctatc tccaaatgtt cctatttgta attaaatgca gcgatcagca gtaaggattt
      421 tgaagctgtt ttagtagttc cgctattctg cttaacatgt ggcacccgta ataattaaaa
      481 tgatactaac acatgcacaa ttttatggcc cttatggtgc aacccattat gccaaataag
      541 ggcctctgtt ttcacagcat actgcacatg gtctcattac acccactttt cttttcctgt
      601 cttcacacta acaactgtta aagtgaatca acacacgaaa cgtactataa cagcttagtg
      661 tttatgatat gtgtgctgtt agtcagtgaa caggaaaatc taaacattta ctgtttatgt
      721 aaagaatagc gttagtgtta gtgaattgct tgggtctgct tcctttatta tctagatcac
      781 aaacataatg atgggtgtca atggtaccta tatttcccct ttgctttcgt ctcctgtgta
      841 gatgtctata agaattagag gaacttcacg tttgcagttc tagaaatgtt ttctctcaag
      901 tagttttcct tttctgcatt aaagtgcagg aaaaatattt ctattataaa ctcccaccat
      961 ataaa
//
LOCUS       KCLJ01002062             779 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 229861cal ultra-conserved element locus
            uce-5719, sequence.
ACCESSION   KCLJ01002062
VERSION     KCLJ01002062.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 779)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 779)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..779
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="229861cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>779
                     /note="ultra-conserved element locus uce-5719"
BASE COUNT          250 a          134 c          182 g          213 t
ORIGIN      
        1 gaaattcttg agctatgtcg agaaaaagag gattattccc ctttaatccg tgtgattggg
       61 agagtgtttt ctagtgctga agcactggta cagagtttcc gaaaaaccaa gcagcacacc
      121 aaggaggagc tcaagtctct tcaaggaaag gatgaagaca aagatgaaga tgaaaaggaa
      181 aaagctgcct gttcggctgc tgctatggaa gaggattctg gtgcatcatc atcttcatca
      241 tcaagaatag gtgatagcac acagggagat aataacctcc aaaaactagg cccagatgaa
      301 gtgtctgtag atattgaagc agtcagacgg gtctatgata ggttactttc taatgaaaaa
      361 atagaaactg cctttttaaa tgcacttgtg tacttgtcac ctaatgtgga atgtgacttg
      421 acttaccata atgtgtactc tcgggatcct aactatctga atttgtttat tatcgttatg
      481 gagaatggca atcttcatag cccagaatat ctggaaatgg ctctaccatt gttttgcaaa
      541 gcaatgagca aactgcccct tgcagctcaa gcaaaactgg tcagattgtg gtctaagtac
      601 agagcagatc aaattcggag aatgatggaa acatttcagc agcttattac ttacaaagtc
      661 ataagcaacg agttcaatag tcgtaaccta gtgaatgatg atgatgctgt tgttgctgct
      721 tcaaagtgct tgaaaatggt ttactatgca aatgtagtag gaggggatgt ggatacaga
//
LOCUS       KCLJ01002063             298 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 229969cal ultra-conserved element locus
            uce-2982, sequence.
ACCESSION   KCLJ01002063
VERSION     KCLJ01002063.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 298)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 298)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..298
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="229969cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>298
                     /note="ultra-conserved element locus uce-2982"
BASE COUNT          109 a           65 c           48 g           76 t
ORIGIN      
        1 gcgttgcagt tacatgaagt gcctgagaag cacagaattt acccagttca agcatccaaa
       61 aaaaaaacca gcacccttac cccagtcctg ttcatacaag gcttgggaaa ggcaccatga
      121 ttcacttatt ggcatgtgtg gacacacaaa aacaagatgc tctgagagat ttcaacataa
      181 tgtaactgaa ctgaggagac caaattacag tttatactaa aaaataagca tacatatctt
      241 ttcattattt cattacacac aaatgcattc ccattaaatc tggagcaatt ctaaagtc
//
LOCUS       KCLJ01002064             601 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 230073cal ultra-conserved element locus
            uce-5025, sequence.
ACCESSION   KCLJ01002064
VERSION     KCLJ01002064.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 601)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 601)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..601
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="230073cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>601
                     /note="ultra-conserved element locus uce-5025"
BASE COUNT          190 a          106 c           88 g          217 t
ORIGIN      
        1 tccctcttct aacacacagg aaatgtctgc aatgttcctt tgaccccttt taatttcttc
       61 aaggggaaca tttgactctt taagcttctt cccacttttt aaaagttcct gcaggtttgt
      121 aataatttag taggataaag aagattacta tagcagtcct tttttcttca attagtattt
      181 ctaatcacat tagacatgtt ttcagtatcc agagaggatg cctgatccct acagctatcg
      241 tgaactatta actttaattg aaatttacaa gtctaatgtt gttacatctg ctaaaagcat
      301 taactgccat gttaattacc aaaatgttaa tgttgcgtta aaatatgaat gttccctttt
      361 gacagttcat ctgtggttta attatttatt tttggtagaa tatctcctcg cataaaagca
      421 aaaatgctga ctgaaataat gagacataat gggaaaactt catctaggaa gaaaacttaa
      481 tactttagaa taccagttgc tagcagaaat tcatttgcat tccttgctgt gtcaaaaata
      541 aatacatagc acatgtctaa gatgttattt ataattgcag cacattcttc agcttttact
      601 t
//
LOCUS       KCLJ01002065             833 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 230182cal ultra-conserved element locus
            uce-6555, sequence.
ACCESSION   KCLJ01002065
VERSION     KCLJ01002065.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 833)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 833)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..833
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="230182cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>833
                     /note="ultra-conserved element locus uce-6555"
BASE COUNT          255 a          138 c          164 g          276 t
ORIGIN      
        1 agtcctatac tggaatgttt tgttacattg ccagaactta agtgagctgc atcgctcagt
       61 gtttctgaac tgctttgctc tttattgaca attacaataa aatataaagc tgatatttaa
      121 atcctgcctg attagtgcga acagaaatgt ttgggggaaa atctgaatta gttccacttc
      181 ataacagagt aaatagtgga tttcagcctt catttaaaac aaaaggtaaa tctcataccc
      241 agaatccagt ctgtctcaaa aaattatttc cttggaagtc taaattggga tgccgatgaa
      301 gtttcagaac aaaacgggta tttttatact ttgttcattt catatttatc actagcttgt
      361 ttgctaattt tcatttgcaa gaggcaattc ttccagctaa ctggctgcct caatgggcca
      421 ctgatttctt tgaagtgaca gtctgtaaat atgcataaaa aagagatgca attagcgtgt
      481 gtgtggttca gtgcagcctg atttcattgg caagtttacc cacagtgttg ataagctaca
      541 ttatctagaa aattggccgc tgaaaaacag cacctctgat tgccagcaaa ggttccagat
      601 aacagggtgc tgaagagaaa tataattgag gttgaatatg ttaaccaagg tgtcacatgc
      661 tccttagaag cgctaattta tcagcatgtt ggaattttta ttaacatttg gaatgcattt
      721 ctaccacact aatgaagtgg aattggcagt tcaggtttta gttattgtca tttctgagaa
      781 gttaaatgta atttctcgtt agacacagtt atgtaaatat atttgttcag ggg
//
LOCUS       KCLJ01002066             605 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 230295cal ultra-conserved element locus
            uce-6255, sequence.
ACCESSION   KCLJ01002066
VERSION     KCLJ01002066.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 605)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 605)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..605
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="230295cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>605
                     /note="ultra-conserved element locus uce-6255"
BASE COUNT          213 a          114 c           97 g          181 t
ORIGIN      
        1 ttcattttaa attgagtctt cttgaagcaa aggagtttcc taactaaaag ttgactgaaa
       61 acattgcaga atacagccac gtagtatctt tgaacacatg ctttatgtta gagcatagag
      121 gctgcaacgt tttccactgt tctctgttaa atcatgcatt cagttgtttc catttataca
      181 gcatcaaagc agttgaaatc caattgaaaa gtttctttag acaaccattg tgcaggaaca
      241 tgatgtcaat attaataaag gctgaatttc cccttggctc acttcttaca gataagcttt
      301 tcaataatac actgcttgca ccaaaggtct gatgggactg ggaatagtaa aaaacactaa
      361 taaaagaatg ttgaatgttt ttatattaaa tttccccaca ggcaaactga aaagcctact
      421 tagagtacgc caatcaacat ggcacttatt aaatgtaaca agagtcctgt tacaacagat
      481 ctttaaagcc cctaaatatg aattagaaag taaagacaaa agacaattac agatgtattt
      541 ctaaattgaa gccctggaca cctcacctga tactcatgaa catgacacta tgtttgatct
      601 tcaaa
//
LOCUS       KCLJ01002067             731 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 230405cal ultra-conserved element locus
            uce-7237, sequence.
ACCESSION   KCLJ01002067
VERSION     KCLJ01002067.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 731)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 731)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..731
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="230405cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>731
                     /note="ultra-conserved element locus uce-7237"
BASE COUNT          213 a          139 c          132 g          247 t
ORIGIN      
        1 aaccaataat aggggaaagg ttaatgattt ctgtaagcca ccaaattcac ccgcccctgt
       61 agtttactaa gaaaattagg gtttcttcat gctgagctta tgggaacact ttacccatat
      121 ttcaaccctt ctttcctctg agatctttga catcactgct ttcttgctgg agaatttaca
      181 ttaaggacaa ttataaaaca aaaatatacc accattcagg aaaatataca acttcttatc
      241 agagggatgt ggatgttctt cttgccagtc tacagacatg gagattaaat ttcagagaga
      301 gatttatttt gtgctattgt cctgttattc accagaggat tgtgcaatgc aagtaatctg
      361 atcagaataa tgcataggga catatttcag aaaaccaata attgtggtaa tgttgagctc
      421 tgctaggtgc caaaataaag tccaaaatca ctctccctct tttccacaat tccttaatca
      481 tggcatcata atgtgctgct ctgttgtcca ttaaagccac aagcttgaag taatcaatgc
      541 tggacatttg gagatttatt gtaattttag atctacagca cttctgctgg ctgaaaagca
      601 aaattatagt ttataggtgt gccatatctt acattttaca gcttttactt ctttaagctg
      661 tcttggtgtg ttcttggctt gatttccttt ccacctgagt gctgcaggct tttttatgat
      721 gttaggaagc a
//
LOCUS       KCLJ01002068             366 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 230511cal ultra-conserved element locus
            uce-2369, sequence.
ACCESSION   KCLJ01002068
VERSION     KCLJ01002068.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 366)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 366)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..366
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="230511cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>366
                     /note="ultra-conserved element locus uce-2369"
BASE COUNT           96 a           86 c           80 g          104 t
ORIGIN      
        1 gagctgggct ctggaggctt gcagccctct ttcaggaggc cccagctcaa gctggagctg
       61 ttagttacgc tctgcaccgg agcagcactc acacaaaacc aacatggcag ctggtgctgg
      121 gctttcatgg acacataaca gcccaaatgc catctattta agcaattttt ccctctctat
      181 aggaacttag cgcagcataa acacttgcaa tcatgcactt cctaggatgc atgtgctatc
      241 gaaaagggag gtgttaattg ctgtgctaat tacaacatga ttgctttgca cttgttttgc
      301 acttgcaggt gattaaattt ttaacgaagc atattacttg gcactgttag catagttaac
      361 acattt
//
LOCUS       KCLJ01002069             751 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 230619cal ultra-conserved element locus
            uce-5379, sequence.
ACCESSION   KCLJ01002069
VERSION     KCLJ01002069.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 751)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 751)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..751
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="230619cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>751
                     /note="ultra-conserved element locus uce-5379"
BASE COUNT          222 a          132 c          154 g          243 t
ORIGIN      
        1 ctcataattc ttctattacc ttgttcattt atggtttttg aactatgtaa taaagaatgt
       61 atttgtttcc aggatcacag ctctgctttg ttccagttgc agtgttctgg ataaaaatat
      121 cctcctgtta cgtgttgtta tacaatagat tgctgctgca ccgaagctgt tactcagaag
      181 aaatgtgcta tacaagggtg ttagaagtag cctgcaataa aggaagcgtt gtggtagaag
      241 caaaccagcg tagtggctaa attgtgaggc atcttgtttg gaaatcgaat ttaattaaaa
      301 agcactctca atctctagta atataactgc tttaaatttt cagacagtgg gagtagctca
      361 ccgttgccca agtatgcctc atctcccaaa ccaaacaaca gctacatgtt caaacgagag
      421 cccccagagg gatgtgagcg agtgaaggtc tttgaggaaa tgtcgtaagt aatgcctttt
      481 atatcagctg gtatctgcaa agcagtaaac ctgtttactg agcctattca actgcagatg
      541 aataaactat tccagctgat gggttttgca ggagcattat agtttgtgca agagagaagt
      601 tcaagtgttt acattggtgt gaagattttt gtgcgtttac aaaaaaaatc caagcaaggt
      661 acatgtaagc atttaaaacc tctttccatg tatttaaaca ttttaaattt tcatggcttt
      721 ccccttgtca taattgcatt ttgatgtgtg t
//
LOCUS       KCLJ01002070             495 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 230727cal ultra-conserved element locus
            uce-2187, sequence.
ACCESSION   KCLJ01002070
VERSION     KCLJ01002070.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 495)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 495)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..495
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="230727cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>495
                     /note="ultra-conserved element locus uce-2187"
BASE COUNT          119 a          127 c          117 g          132 t
ORIGIN      
        1 tgctgaaatg attccatctg acacaatgag agtgtcactc tttctcactt tgcagagagc
       61 gctgcctatt cctgatcatg acataaaata ctcacgggag ttcttgcaac actgagctcc
      121 ttgccctgta ctgtagatgt cactgctgtc tggttgtgct taattacagt tttgacttct
      181 gaaaaatgcc taaaggacaa tgcttttgtg aatttgaaag aaatcttttt cttcgtgttt
      241 ccttttagaa ggcagagagt gtgtgaactg tggagccact gctacccctc tctggagaag
      301 agacggcacc gggcattacc tgtgtaacgc ctgcgggctc taccacaaaa tgaacggtca
      361 aaaccgacct ctcattaaac ccaagcgaag gctggtaggt gtcggggata aatcaggcga
      421 ccacacacat cgtgcctcat ctctgctgag cccctgcgtg gagccgcgtc actgccgtgc
      481 ctcggggcac atctc
//
LOCUS       KCLJ01002071             547 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 230838cal ultra-conserved element locus
            uce-4762, sequence.
ACCESSION   KCLJ01002071
VERSION     KCLJ01002071.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 547)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 547)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..547
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="230838cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>547
                     /note="ultra-conserved element locus uce-4762"
BASE COUNT          203 a           81 c           94 g          169 t
ORIGIN      
        1 agacttgatg cacacaggaa cagaatacaa aataatcagt cataatgtta cgacttcatt
       61 tttcatttgt gttttcaagt ttgccttgaa aatcagagat tgcgctgaag gaaaaaagac
      121 aatattatat caaagaaaaa gggaaaatta taagcatgac ttatctttaa tgttttacat
      181 caaaatgaaa tttctgtgat acgtgtcatg tgcataaaca acacaggcag cttttgtctt
      241 tgttgaattt aaatgaaaag tccctctaga tattaatatg tggacttcat ttgttagcct
      301 gctaagtcag ggacttataa caaaagcttt gtaaacaaaa gattaaactg aatcgagctt
      361 tagaaaatga aaggaaaaca agagtcaaat aatcacagat cagagtgggg ctgcttagat
      421 tgaaatcact acaagctact ggagtggaaa atgtttaatt gaactatttc attacgcagg
      481 aagtttatgt ccctcttgta gaatccaaaa tatttgtatc agaaaatcca ttctccttct
      541 ttaaaat
//
LOCUS       KCLJ01002072             728 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 230945cal ultra-conserved element locus
            uce-432, sequence.
ACCESSION   KCLJ01002072
VERSION     KCLJ01002072.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 728)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 728)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..728
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="230945cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>728
                     /note="ultra-conserved element locus uce-432"
BASE COUNT          210 a          145 c          159 g          214 t
ORIGIN      
        1 ttttcagcag ttttttgtca tccatctggt aggagaaatg gtaggggttg agcagaggag
       61 gtcttatgtg ggagtaaacc agggtcaaat taaaaaagtg catctcccta tccctggtgc
      121 tggagacata gagccactaa agcaaattat tttttattaa atgtgattgc agaaagtcct
      181 gggaaggaat gtgttaatga ctggtgattg aatgcagtgg tttgcaagct ctaagcagct
      241 ttagtgtctc ctaccacagc cctgatttaa aattcataaa tgctaatcct ccataattta
      301 cggtttaaaa agcagcccca ctcacaggcc ctgtggctac agctctgtca gagtaattat
      361 gccgccaagc tgaaattgga ctactaactg agatattaaa cagggtagga aatcctcttc
      421 cctggcagcc tacccaatta ttccaaataa gcaaacagat tagtgagtaa ttttccagtt
      481 aaatctggtg attggtgcca gaattgtatg ttaaatattc agaagtaaat agattaaaga
      541 tgaaatgtcc ccttttctca agcttaattt agtgtgtata ttaaaactct ccattgaagt
      601 gcaatccatt tgctttgaaa acagaacctt tcctggcttg tttgcacttg gggcagcgcg
      661 ttcattagct ggggcacttg tgccgaggga acctcgtgcc acattagcca cagtatcagc
      721 cctgctgc
//
LOCUS       KCLJ01002073             422 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 231054cal ultra-conserved element locus
            uce-6310, sequence.
ACCESSION   KCLJ01002073
VERSION     KCLJ01002073.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 422)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 422)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..422
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="231054cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>422
                     /note="ultra-conserved element locus uce-6310"
BASE COUNT          114 a           89 c           71 g          148 t
ORIGIN      
        1 catcttccag tacattcctg ttgcttaaag aacatttatt ccagtattgt ttcacccatc
       61 tttacttgcg gcttcttaaa gctgactgtt cttgcagggg ccatgtgctt ctcctagagt
      121 acaaaagtaa ggtctttcct tactaactgc agggtctata tattacacct caatgtacac
      181 actttgctgc tactgtttgt actgtctaca gtagaatttc cttatcttgc tcctggtagt
      241 gcattacagg caagcatgaa atgtaaagta tttatttaaa taaaaacctc taaattggta
      301 attgaattac ctccctgtag ctttagagtt tgtgacattt cttgaccttg ctagttcttt
      361 cattagatcc atgcaagatc tagtcatatg gttaaggata tcaagcagac acgactacga
      421 ac
//
LOCUS       KCLJ01002074             646 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 231155cal ultra-conserved element locus
            uce-6806, sequence.
ACCESSION   KCLJ01002074
VERSION     KCLJ01002074.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 646)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 646)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..646
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="231155cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>646
                     /note="ultra-conserved element locus uce-6806"
BASE COUNT          215 a          115 c          134 g          182 t
ORIGIN      
        1 tttggtaata acagcacaca gagagaggta agaatcagtt ctagtgtctg cagacagcag
       61 tacatacaag ttttacattt gcctctgcag aaaacgtcca atgtcaatgc acagaaatat
      121 gttaattgtt tatttttaga aacctctaga aagttttgca tattctgtaa tatcacaaag
      181 gacttcttct gtttacagtt gcttagaact aagaagatag atatttaccc aagttttctt
      241 ggcttcctct tgctcccttg atattctaga gttccctgtg gagagggcca agaacataca
      301 gtcaaagcaa agcagcaagt cgttaatttt taattcaaag tgattttgtg ttgaatgcaa
      361 gcagatgctg ataatatcag aagtcacagc ataatttttt tgatcaaagg gctcaagtga
      421 gcctgatgaa gcatgcatct tgctcgtctt tgataaacca catcaattat tcaccgtgaa
      481 ggcagacatc ctgacatgaa agcaacagat aaagagcata agcacatgtt caagacgaga
      541 gcagaagaac gtgggggtgg ggctggaggg gctgaaacag gtattaataa cagaattatt
      601 aactggaaac aaagccagta aaacagcttt attgccactt tgaact
//
LOCUS       KCLJ01002075             520 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 231262cal ultra-conserved element locus
            uce-5087, sequence.
ACCESSION   KCLJ01002075
VERSION     KCLJ01002075.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 520)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 520)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..520
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="231262cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>520
                     /note="ultra-conserved element locus uce-5087"
BASE COUNT          128 a          116 c          146 g          130 t
ORIGIN      
        1 cgctgcaaat tgtacattta aacaatgaca gagtttttcc actccgtttg gcaaacctcg
       61 gtgttgcccc tcacggcagc aacggaaggg ttaaacataa actttaaaca ttccctgtcc
      121 cgcagccttt tccatgagcc gaggtgggct tttccttaaa taacgagggt ggtcccagca
      181 tactctatat cgagacagct tttcatcagt tgctcatcag catgctaatt gctgtatgac
      241 taattatgcc ctgaattcca gttgattttc ttaatgagac agctgggtta attatgtaat
      301 cgtatgatta cattagccca gagtgccctg gcgaaaagga aggcgggcgg gagtgggatg
      361 gcagcgggcg agggggcagc cgtggccacc gtaatgatca gggaagagcg cccgcggtgt
      421 aaacacgggg cactgggagc ttcctcagct cgcaggatga gcgaggcaaa attcacttgg
      481 tcagcgatgg ttgtaactcg gagattgagg atgggtttgg
//
LOCUS       KCLJ01002076             426 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 231361cal ultra-conserved element locus
            uce-3540, sequence.
ACCESSION   KCLJ01002076
VERSION     KCLJ01002076.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 426)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 426)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..426
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="231361cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>426
                     /note="ultra-conserved element locus uce-3540"
BASE COUNT          121 a           87 c           91 g          127 t
ORIGIN      
        1 aggtcattaa aataaagaaa tgatgcagcc catagcctgg ctgtttctcg gaggctcggt
       61 gctcagaggg tgaccctctg aacaggctgg gccatctcac acagcactca gaagtggcac
      121 ttagactgta aatattatat gctgctgtaa gaacatttga atggtaatac tcaagcaatt
      181 actttccttt caagatcatt aaacacaaat ctgacttgta ttttaatagg gctgccaatg
      241 tatttaatgg ggggcagtaa agggtaggtt ttttctaatg gatggatgtt tatattatta
      301 tccactctga gaggccacgt taggaggagc ctgtacaaca ctcatgtgtt ttggctcagc
      361 ctttttctca caatattcca tgtatcttac agcacgatgc ccaaaaattc cacctcattg
      421 tgagac
//
LOCUS       KCLJ01002077             758 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 231460cal ultra-conserved element locus
            uce-5688, sequence.
ACCESSION   KCLJ01002077
VERSION     KCLJ01002077.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 758)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 758)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..758
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="231460cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>758
                     /note="ultra-conserved element locus uce-5688"
BASE COUNT          238 a          134 c          177 g          209 t
ORIGIN      
        1 ttttgttctg gtcctggcaa acttaagtcc atttcagcaa agagtgatac aaaagtgatc
       61 agtgctatgt gctgagatag acaggctgac tgtctcagct ggcataagct gttggagttg
      121 caggagggct aagttatttt accctagatg agaatctctt tattgtgtgt ctcagaataa
      181 gcctttattg aaccaagccc aaggggagaa agagagagaa gaatgatgga aagaaggaga
      241 ccaaaaggta cgcagggcag aagtagacaa aaccctcttc ccctatcact gattacaaat
      301 tattatacaa gctgagcccc atattgtata cttcatttac agtaattgta caacagctgt
      361 ataataggtg tagtttaagg tatgagtgtt gctcagagtg tagcttaaat gtccacagtg
      421 agatgtgaat atgaatatga atggtcctga ctgcatagta attggtggta ttatgggagt
      481 gaatggaaaa gctacatatg gatgaatggg tggggctggg gaagggcgca gcacaagaga
      541 ctaatggtag attttatttt ctcacataga tggcttttcc tttcaataat tagccagcgg
      601 cagtagaagc aaatgaagag aaagagaagg agactagctt ggcacattga agctctatac
      661 tcattacatt aaatcattcc aatttccctc tcttcacccc acctacccag acattgattc
      721 atccacatta aacttgtaac aagttccagc ttgcatgg
//
LOCUS       KCLJ01002078             695 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 231567cal ultra-conserved element locus
            uce-638, sequence.
ACCESSION   KCLJ01002078
VERSION     KCLJ01002078.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 695)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 695)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..695
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="231567cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>695
                     /note="ultra-conserved element locus uce-638"
BASE COUNT          244 a          119 c          114 g          218 t
ORIGIN      
        1 aagccatttt caaaccctga aacaaattgg ctcctatatg taagtttaaa ttatccatca
       61 acctgaagga ggattcaagc aaaatcgaag gccatcttga tgaataatca aggtaaattt
      121 gtcacatttt ttactgtgct gcatactttc agagtttcat aaaaagatcc acataattag
      181 tttagcttac gaagaagttg aatgacaagg tcaggctctt gccctttcag taaattagag
      241 aagattgcca taaattgcat aatataatga aacaccaatt tgcatatttg ctgctatatt
      301 aaaagggatc agttttagct cgcaaagcag aacaaataaa aacatgcatt ttaataactc
      361 aaattactcc caggaagtga ccctcagcag aaagcctgat tatcactact taattagaag
      421 ccttggaaat ctaaatcctc ctttaaatcc tattctgtgt acagtgaaag atgaagccgt
      481 gagttttgtc ttagattcaa tatttactct ttactaatat gtttgcaggg gagactttcc
      541 aagcattatg aagacatgca ttaatattca aagaaagagt gcataaaacc tgtgttggct
      601 tgcaggtgca aagcaattaa caagctggca tttgcagtac ttttaattaa ttaattaaaa
      661 attcaaagct gactttcatt tctttaaatg tttga
//
LOCUS       KCLJ01002079             602 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 231678cal ultra-conserved element locus
            uce-2694, sequence.
ACCESSION   KCLJ01002079
VERSION     KCLJ01002079.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 602)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 602)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..602
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="231678cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>602
                     /note="ultra-conserved element locus uce-2694"
BASE COUNT          223 a          101 c           84 g          194 t
ORIGIN      
        1 aaaagatgaa ctagcattct aatttgttaa ttaattgtta atagaaaaga ctcaaatatt
       61 gaaaagacta tttaaaacac tttgtaatac tgctctaaag ccacccgttt tgatttcttt
      121 gatatagaac tacgaatcac cttaaatgag acaaccttaa agtagattat gtctgcaatt
      181 ttctctaatt caagtctaaa ttagagaaga cattttatga atgtatgcta tgctcaaagc
      241 taattgaaag caattatcaa agtggcattt tgtctgtgac tttaagatac attgtaagat
      301 aataaatgat tctcattatg taataaaaag gtcacatctt gcctttgggc tagtgacgtt
      361 aggagttttt caaaagcaat ccgagacatt ttctttagtg aactacgact aatacaagaa
      421 ccatcactta ttaaatatca gttgtcacct gcatagtacc cacatcagag atgggtatct
      481 ctttcaaaaa gaaacaccac ctcattaaaa actggaaaaa tatatctctt aaagtgcata
      541 cctgacattt tcaagctaaa atgaatatcc ttcacttgtc attcactaat agtaaatgaa
      601 ac
//
LOCUS       KCLJ01002080             663 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 231787cal ultra-conserved element locus
            uce-4086, sequence.
ACCESSION   KCLJ01002080
VERSION     KCLJ01002080.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 663)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 663)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..663
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="231787cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>663
                     /note="ultra-conserved element locus uce-4086"
BASE COUNT          204 a          142 c          138 g          179 t
ORIGIN      
        1 gttgttctct ctaactgaaa ctcaacactt ccaattactt taccagcaat ttacctccaa
       61 tcgcaggatt ttaagttaat cccctttgag ttctcagaac atctacaatg gcaatcactt
      121 tgcctattag ctgaacagcc tttcgggaga gctttctgct tttctctcaa aatatgatga
      181 acttacaaag ccaaatgcca caaagacagt aagggatcca cagtctgctc tgaagcagca
      241 gcaaggggcc tagcaatgag ggcagactaa ttttattaac ttcagggaaa cttcaaaaag
      301 ctttagggct ttaatgccag acagagacga ccccaaaagt cagtttaagt gctgcataaa
      361 caaaggatta gggcaagaaa aagctgaagg ctccttgcat ttcttgttta tattgtcata
      421 tgacctagta ggagtgggag agggctgcct ctctgacttt aatcccccat ggtgtacagt
      481 ggcgtttcag ttcactgacc tacattacga taatattaaa tttatgggca gaggtgcagt
      541 atcaaactca cttaaggaca ttgaaaaggg gcaggacggg aaaaataccc agaagagaaa
      601 ttttctggct ggtatagcct ccccctctca cttaggttag atcagcagct tagaaaagga
      661 ttt
//
LOCUS       KCLJ01002081             329 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 231896cal ultra-conserved element locus
            uce-5493, sequence.
ACCESSION   KCLJ01002081
VERSION     KCLJ01002081.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 329)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 329)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..329
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="231896cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>329
                     /note="ultra-conserved element locus uce-5493"
BASE COUNT           97 a           81 c           54 g           97 t
ORIGIN      
        1 tattctcatt tgtttatctc tagatttttc cccctttctg caaattcatt tgaatagctt
       61 tcaagctgca aaatggaaat gtggctcctg ccctctattt cagcagcagc gtcctggcaa
      121 cagagcaatt ttctatcatc aaggataaat ggcatcgaac agaacattct gatgaaaaaa
      181 agctttagcc caagaagccc atgattgctg cccttcctgt ctatcatccc tttacaaaat
      241 cctctcctcc aaacctgagc tgcatgctgt cagagctaat aatgtcttct aaagaaaagg
      301 ggaagaaaca gcattcatgc acaatgttc
//
LOCUS       KCLJ01002082             672 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 231993cal ultra-conserved element locus
            uce-7703, sequence.
ACCESSION   KCLJ01002082
VERSION     KCLJ01002082.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 672)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 672)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..672
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="231993cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>672
                     /note="ultra-conserved element locus uce-7703"
BASE COUNT          244 a          125 c          111 g          192 t
ORIGIN      
        1 cacaggagct ccaaagggat gccctattga aagagaaaag gagcatattg attaaaagct
       61 ctaaataaaa catatttaag gatatcaatt taacttgaaa atcatagaaa agaagttgta
      121 ctttacgttc taaagaatat cctgtattca gttaataaac aaaagtattt aaatgtgctt
      181 agcactattc agtgttagca aacacagttg tcataatcaa actattgtct cacatgcact
      241 gtataagatt tgtaacaaga agatgtaaat gatcaggact aacatggcat tactggcggt
      301 ggtggctgac aaagctgttg ttgaaactac tccacacttg gcacatttga gcgtcaaacc
      361 gctatgaggc tcactcatct gactgcaaac aaacagaaca cccacaaaaa gaacaaaata
      421 ttgaattgtc accaaacgtt gctactgaaa tttagctttt aaatatgacg tcatgcattc
      481 aagatgaatg ctctatattg ttgcttttgt actttacgtt agctttacat gttaatatgg
      541 ggcttaatta catgcaaact ctatttcttc cacttaatct aaaaaaggcc ccaaatgtga
      601 tcaaaaactg ctcagtaaac ataagcacgt gctagtatag acacacaaag tgaaatccct
      661 ctattcagac ct
//
LOCUS       KCLJ01002083             712 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 232104cal ultra-conserved element locus
            uce-3648, sequence.
ACCESSION   KCLJ01002083
VERSION     KCLJ01002083.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 712)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 712)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..712
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="232104cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>712
                     /note="ultra-conserved element locus uce-3648"
BASE COUNT          187 a          145 c          160 g          220 t
ORIGIN      
        1 cagggaagga gctcggcact tttccctttg catggtagaa ctcggaggtg aaacacaatc
       61 atttcagtct ggatgaggct atcctttaga agtctaatta aaaaatcgac tgacagggtt
      121 cattcctctc cgctgctgcc tttgtatgta cgctgggcat gcaggaccta agtcagatgc
      181 tgctttgtta taattagggc agcaaatttt gttttctgtt tggtacttgc tgttacatat
      241 tgcatgtaat gtatggcact gttaagggaa aaaaattgga gtcaaagtgc ctggaaagtt
      301 aggtctgctc tgtagcactg tgagattgtt gacatctgcc gaggttggag agctcagtaa
      361 gcaggaaatg gggtgtcact ctgagtggta gtttaccatt atcctggcat cctaatgaag
      421 tgtctgcagt gcacagagct tctggatggc atcttaacgc acggctaagc aaaagcactt
      481 ctctccttgt cactgtcatc catctgcctg caccctactg tagccaatgg gatggaacca
      541 tgctacaatg tgctataagc catttagagt tgcacattgc ataatcagtc ccatcaaata
      601 tgtaaaaaat gactattatt ggttatttcc ctcaaactct ggcacctgga gttcgataca
      661 ttaaagttta acttttctcc cattaattcc acatatattt ttgttaaatg gg
//
LOCUS       KCLJ01002084             577 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 232325cal ultra-conserved element locus
            uce-2772, sequence.
ACCESSION   KCLJ01002084
VERSION     KCLJ01002084.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 577)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 577)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..577
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="232325cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>577
                     /note="ultra-conserved element locus uce-2772"
BASE COUNT          151 a          158 c          120 g          148 t
ORIGIN      
        1 aaggagtgaa agacagaact cataaaaaac ctgtaaaaat ccaaatgctc cagctattac
       61 agatttctaa aaataaagca gaggaggttt cagtagcaat aataagctgc atcttgtctg
      121 tatttcagct ttataagaaa aatatggctg ccttttagta ctcatggctc agagcaaacc
      181 atggctgctt caccccacga ataaaagtga gctttcagct tgctgttgtg ttgcgtttca
      241 tttgtccttt aagtgtgtca gccgcttctg cacccccttt cacaatgcat aggctgtcgt
      301 tccatgacct agcattatta aattgcactt atcaatcatt cttgccagga atgccatcgc
      361 caactacatt aaagaagtca gagaagtctg gtttcagcag tccctcgcct tcgcagacct
      421 cctcccttgg aacggctttc acacagcacc atcgacctgt cattacagga cccagaggtg
      481 aggcctttcc cgagagcccc cagcccgccg tgccagcgcc gctccaggaa agccgtcgcc
      541 gcctgggacg cgaggggctg ctccactgct tctctta
//
LOCUS       KCLJ01002085             874 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 232438cal ultra-conserved element locus
            uce-662, sequence.
ACCESSION   KCLJ01002085
VERSION     KCLJ01002085.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 874)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 874)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..874
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="232438cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>874
                     /note="ultra-conserved element locus uce-662"
BASE COUNT          270 a          149 c          162 g          293 t
ORIGIN      
        1 tgcatggtat ttgctcagtt attgctgtct gaattacact cacatgcatg attataattt
       61 actataatgt ttacaaccag ggttttcatg tggttttaat ttacattgca attaaatgag
      121 gagagcatca gacatcaggg gttaagaggt accttatcta caaatcataa aaattggtta
      181 gcatttgaaa acatcaaaaa gagcctgttt atttaaataa atatttttta tacttgctca
      241 tctttcatta tacagctata ctgctttgca gaaagttttt accccaagta aatttctcat
      301 ttgttttttt agtgtttgtg ttcaataatg catcgattct cagcagcagg gaagagtgag
      361 agatttatgg tgtatgattg tgtcatgtct tgttttatca tgtcgataga tagaaaattg
      421 accacaacta caaaagccta tttataattc tatttgatca ccatgggaac tcatcaaaac
      481 agagggcagc accgaagttt cattaacaga tcatctcaga tctcctgctg tgtcctgtct
      541 tcattttctt ttcacatcat ccttttgctt agagccccag catcagagag gaggtcagag
      601 caacagtaat ggcacattta ccattcccca ccatccccca gattaatatt aaactgttaa
      661 aagaaaatga gagtttattg attgttttaa gccaggcatg ttctagcagc aagccgttat
      721 tcagattcag tgagtggcaa tagataactg atttcaataa gaagacagag aagaatgcgg
      781 tccagggatc agaacagagg gagaacaatg gcagaggaat gtttaatctt ttttatggca
      841 ctaatcgtta cttttgcaat ttgtgattgt ttat
//
LOCUS       KCLJ01002086             584 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 232550cal ultra-conserved element locus
            uce-4662, sequence.
ACCESSION   KCLJ01002086
VERSION     KCLJ01002086.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 584)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 584)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..584
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="232550cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>584
                     /note="ultra-conserved element locus uce-4662"
BASE COUNT          173 a          146 c          107 g          158 t
ORIGIN      
        1 attaattaaa cctggattct ttgctggtgc ctattgcagg gctgtggtct attcctgctt
       61 gttctgctct cttgggggat ttcaggcatg ttatttttgt gatttcacat ctgccacaag
      121 tattcctcta agagacagaa agggaaaggc tcggtgaaga aaaacacagc cacctccaaa
      181 gtgctaaaac tgcaataaac ccatcatctc taacaacagc ggcatgaaaa gataaaaccc
      241 aggctgccaa gaatgtagta accacccatt cacttttaaa tgctctccac acttcaatgc
      301 acagacctaa ttacttttct gcattcccaa atccactttg tagggctgca atcagaaacc
      361 tggtgttaaa atattttaga ctctaaggat caagactaat tatggaccta agctgcacct
      421 cttggtttcc ttaggaagca gtctaccccc tcccccaccc actccacccc cttccctttt
      481 tttgggatgt ttaaaagcat gctccactag aagaaaggct gtccagtctc agctgggggt
      541 gaagtaaaga gagaataaaa caaaaagcta ctcagtccaa ttca
//
LOCUS       KCLJ01002087             660 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 232660cal ultra-conserved element locus
            uce-411, sequence.
ACCESSION   KCLJ01002087
VERSION     KCLJ01002087.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 660)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 660)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..660
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="232660cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>660
                     /note="ultra-conserved element locus uce-411"
BASE COUNT          209 a          112 c          120 g          219 t
ORIGIN      
        1 tatgtcttta atattaaaca caacagatga tataatcaca gaaataatac cagtgacttt
       61 caaggtgtaa aactgtagtc aattttcttc atgtttatca agctggccat tttaaggctt
      121 tcagctggat tagcaagagc agaaagcaga gtgctctgta cattccacag atctgctttt
      181 taagaatcaa catggtacac accatgtgaa ctgtcacatt aataacccta tgctgatatt
      241 caaattttct gtcttaagct aaagaaagat tgaataccct gctgttgtgt ggccaagatt
      301 gaagaggtgt ctcactgaca ttgttcaaag tttatgaaaa tatatgaatg ctcaaatgtc
      361 attggctttg cgcctccaac agactgtggt tttatgagaa atcagtcttt taatcaaaat
      421 gattgaatac cttaaggtcg aatccaaaga tatcagttaa tatctagaaa cgtgctattt
      481 ctgcgtattt tgccaaattt gtggagcatt ttaaagtgtt aatttgtgca tcccatattg
      541 aaaattgatc ttgagtttta gctttttgtc aagcaaaaac atatggttac aagctctatg
      601 cattttatgt gacggctgtt gaagctgtca catgtgcaaa cttgataacc gatgtgacac
//
LOCUS       KCLJ01002088             606 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 232772cal ultra-conserved element locus
            uce-5022, sequence.
ACCESSION   KCLJ01002088
VERSION     KCLJ01002088.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 606)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 606)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..606
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="232772cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>606
                     /note="ultra-conserved element locus uce-5022"
BASE COUNT          187 a          120 c          108 g          191 t
ORIGIN      
        1 attccactct actgctttca gactatttcc atcaaccctc ttattcattt tgatttattt
       61 ccatccataa gcagactaac gcttttctat gcttttattg ttcttcaaga ataggccttc
      121 tattggagaa aaataatgtc tctacgacca ccactttgct caatgcagat cttcattaat
      181 ctgcagccac agtacaggct tttagcagca agcacttttg atgggaattg aatttgatac
      241 tgcattatgg ttgtagggct tctcacaata gactgtgttc ttttctgtgt ctgtgcacaa
      301 tcagagagac ccaattaaat aatttggtgc aataatggag aacaaaagag tatgagggct
      361 taaagtgagg gcttcagcat ttgtattctc ccttttctgt atcatgttaa ttaatttgcc
      421 tgaaaaccaa aagaaagaac ataatgtgaa aagcatagct catctacaac atggaggcac
      481 tttaaatgca gataccagac caaatcaaca tgtaacaaag gaacattcat tacatttcca
      541 taagaaaagt tgccagctaa tgttgagtgg tcctagtcat ggccactgga gctaagggta
      601 gctatt
//
LOCUS       KCLJ01002089             431 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 232884cal ultra-conserved element locus
            uce-365, sequence.
ACCESSION   KCLJ01002089
VERSION     KCLJ01002089.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 431)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 431)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..431
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="232884cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>431
                     /note="ultra-conserved element locus uce-365"
BASE COUNT          133 a           82 c           90 g          126 t
ORIGIN      
        1 agcaaaaagc ttttgctttc ttttatattg ctttgcagac ctaaggccct gctcggattt
       61 ctgcatagtt aatttggcag tttataaatt accacattac gttaacactg aatgcttcaa
      121 aacacaaata tatgcacaga gggcttgaat atttgaagtg ttttagtact atagggaaat
      181 aattttgttg tcaagctgtg gcagatatag aagtgctggg ggatacatga ccatttcatc
      241 aggacggtgt cgatgatggc ctatgaacat ccaaggggag aaatcatctt ttatcactgt
      301 tgtgtaccac gcaggtccag atggaggata aaacatgcat gagttgcccg cagctctgaa
      361 aataattata ctcatttgcc agaaatgtag aaagtgcatc caaccaagtt accacccatc
      421 acagtgacac t
//
LOCUS       KCLJ01002090             401 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 232981cal ultra-conserved element locus
            uce-7752, sequence.
ACCESSION   KCLJ01002090
VERSION     KCLJ01002090.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 401)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 401)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..401
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="232981cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>401
                     /note="ultra-conserved element locus uce-7752"
BASE COUNT          125 a           54 c           71 g          151 t
ORIGIN      
        1 gtaataacat tagttgagat aatcctggtg ttctgcttgt cttttgtgtt agatatgagc
       61 tcctgagacg taaaatccag caaccacttg catcaaatcc ccctgaagat ttaaatctgt
      121 ggcacaatat ttactcagga actcagtggt tttatgaaga taagggtctt agcaggtgag
      181 attacaaaaa ctataaaaac aaatgctggc attttgtata gtgtatgttt aatagttcaa
      241 agtatttctt gtgtctttat gtagtgaaca tattaattat gtaatgaaat attttttgtc
      301 atcatctttg gtgttaatca ttctaatatg cagggattta ttattagtgt gtcattcttg
      361 actcatgtat tgttttgttt tcaaaaccaa atgaaaataa a
//
LOCUS       KCLJ01002091             759 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 233088cal ultra-conserved element locus
            uce-1539, sequence.
ACCESSION   KCLJ01002091
VERSION     KCLJ01002091.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 759)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 759)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..759
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="233088cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>759
                     /note="ultra-conserved element locus uce-1539"
BASE COUNT          212 a          146 c          155 g          246 t
ORIGIN      
        1 gacatgctcg tcatgaaaaa gaaccatttc tgaagcccag ttggggccaa acatttacca
       61 cctttgcttc atagtaacca gtcgagatga agcacgtctt tagaactttg ttggacaccg
      121 tgttgaaatt acccccccat cggttgtgaa gaactgtgct acattcaggc taaccattga
      181 actcagtttt tccctcctgc ctttttgtct ggcaggctac tgttcttgtt gctcttctgt
      241 gtaatgaagt ttaaatgctt gtttggaaca ctttatttaa cagtttagaa ggcttgatag
      301 aaagagtgct ttagtctgaa gagtatacat tggataggaa agtatttcct tctcttgttt
      361 ctcaagtctc tctccgcctt acttagcttg agatctttgc agcttggttc atggattcta
      421 gccttgcccg ttgcgcagta tatcaattga gaggataaac cagtgaacta aaaagcactc
      481 tcagtatcac atttgacaaa aagttttgta cttttcacat agctcgttgc cctgcaaagg
      541 ggttaacagc acaatttttt aaaaataaat tatttatagg attaaaatga cttcatttgt
      601 atacatttgg aattaaaaca atgcaagaag tgtcgtgaaa cacggtatca ctgatgcttt
      661 tctggagtgg cctgagaccc aatcaaaagc agtggctgga aggagatttg tgtaggcagt
      721 tttcagatgg aggaattcac tgttcatctt aacagttaa
//
LOCUS       KCLJ01002092             370 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 233200cal ultra-conserved element locus
            uce-2970, sequence.
ACCESSION   KCLJ01002092
VERSION     KCLJ01002092.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 370)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 370)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..370
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="233200cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>370
                     /note="ultra-conserved element locus uce-2970"
BASE COUNT          102 a           82 c           87 g           99 t
ORIGIN      
        1 tagttcacgt ggactgcctt tagttccgtg agagaaactt aaaaactcct tctggtttta
       61 caagtaaaat tgtttttgtg tagattttta gagcaaggga tctgcaggta tggtgcccag
      121 tgtacttcag cacattccca ggaggagctg acagaatggc agaaacgcta cgcttcccgc
      181 ctgatccgct tgaaacagca gaaggagaac aagcagtgct caggcagtta catggaaacc
      241 ctcattgaga aatggatgaa ttccttgtct cctgagaaag tggtaaggaa cacagttaaa
      301 acagcttggt tttggccctg gagctgatcg aatcactcct caccaagaaa ttgtcctttg
      361 ctcccctttc
//
LOCUS       KCLJ01002093             275 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 233298cal ultra-conserved element locus
            uce-886, sequence.
ACCESSION   KCLJ01002093
VERSION     KCLJ01002093.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 275)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 275)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..275
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="233298cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>275
                     /note="ultra-conserved element locus uce-886"
BASE COUNT           84 a           45 c           53 g           93 t
ORIGIN      
        1 aaaaataatt taaagggtct cagtttttaa agcagaacta cataatgtat taattggttg
       61 ctattagcat gcagttttat tgagcatagc acacagaagt ctgattgtaa gcgaggagtg
      121 ttttcaatga aagtggagtt attttagctg cagacatgtt tacatttctg tggtttagtc
      181 tataactttc tctttttctt gcttcagaat tctgctccat gaagcaaagc ccttagctcc
      241 cagacattcc aaaaagtctg ccaaaataat agggg
//
LOCUS       KCLJ01002094             689 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 233407cal ultra-conserved element locus
            uce-5808, sequence.
ACCESSION   KCLJ01002094
VERSION     KCLJ01002094.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 689)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 689)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..689
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="233407cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>689
                     /note="ultra-conserved element locus uce-5808"
BASE COUNT          215 a          139 c          154 g          181 t
ORIGIN      
        1 aatgtcaagg ttctagctga ggatggagat ccagatcctc acttcgtata gatcagtggt
       61 accagatgcc ctaatctgta gttgctgaga acctatacaa aaagtgtctg aaggcctcag
      121 ggccagattc tgaggtcata tttgcactag gtgaagagct gatctgaaaa gtgtggtaca
      181 gcaaataata ccctcttgtc tcacattaaa accccctgaa gtgccactct ggttgtgtga
      241 gtttattgat ttcccccagc ccagagaaac agaaaaaggg gatggggtgc aggcaaaggg
      301 atggaaatag aaagctataa attatttgtg acaggaaagc aatagtgcca gagtgctgag
      361 cacaagtccc gtgtcactat tagattcctt ttagcctgat gacactgtaa aagaggttaa
      421 gtgtctgatg gaatcgtaca ccttgggggc aggggcagtc caggagcaga acaagccaca
      481 gagagcgggt atatcaattc tccacgccaa taatattccc ctcattgatc gcaacacaaa
      541 gttcaaaaat ctcattatag ctaggcagtc ctggaacttt tttaaaatca atagagtgat
      601 ataatatatg tatactttgt ataaatgttt ctatccatcc atctaccaaa atctgcctga
      661 gggtgtctaa gttaacctac acattatac
//
LOCUS       KCLJ01002095             614 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 233516cal ultra-conserved element locus
            uce-2361, sequence.
ACCESSION   KCLJ01002095
VERSION     KCLJ01002095.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 614)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 614)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..614
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="233516cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>614
                     /note="ultra-conserved element locus uce-2361"
BASE COUNT          164 a          143 c          173 g          134 t
ORIGIN      
        1 ggaggagcat tgattaacga ttcccgagtc gctccgaatc gctttcattt gaagagcggg
       61 aaggagaaag gctgtccccg acaaaggagg ccgatttgac acccactgaa gtctatcttg
      121 tcagcgcaag gccaacaaca attagcagcc taatcccctc tgagctggga agccattact
      181 caccacgcga tagcgttaac aatcaatacc atcacaatga gcccggcaat taatgaagct
      241 aaagtcttac ttcagaacct taattctcgc tgtgtggctt taaacgggag ggtttgtgat
      301 cgttataatt aactggtggt attcagccag gagttagtca atgaaactaa tctggattgg
      361 agatgacaag aggcacagtg tgatggtgtc acctttgttt tctgacctcc cgcttggcga
      421 tagcagatta gcagcccggg ctgacaggca aatgtaatta acagctgaga ccctggtgga
      481 ataaaaccca ccctgaggac agccccgggc aggacaagag gcagcagggc aggcggtggc
      541 ggggctctgc tgggggttgg tcaggatgag gctgtggagc atgtgccagc acacctgtga
      601 gcccataaag ctgg
//
LOCUS       KCLJ01002096             452 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 233628cal ultra-conserved element locus
            uce-5663, sequence.
ACCESSION   KCLJ01002096
VERSION     KCLJ01002096.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 452)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 452)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..452
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="233628cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>452
                     /note="ultra-conserved element locus uce-5663"
BASE COUNT          121 a           69 c           76 g          186 t
ORIGIN      
        1 acatgtttat tctttgctaa aacatgtttc tgcaagtgcc acacctatat tttgcatgtt
       61 ttcagtcagt tggctcaaaa gattatagga aaagtaaatc tctcaaaatc ctcagaatct
      121 cagagcaaaa taccagccta ttttgacaca gttaaacact tttgattctt agaatttttc
      181 ttaactgtga aacatgggta gggcactgaa acatgcattt ttatattttt gctccttatg
      241 aaccagataa cacatgagat gcaatgaaat tttcttagat gtcaattttt aattctctta
      301 tcttgaagca tggaagtaaa tggttgctag atttttttgg tagcgattgc atcttatgtg
      361 ggatgtatct ggtcttttat tatttgtttt atagtgtcat ttcaatgtaa tgtgctgttc
      421 tttgtgtctt tgttgtctct tttttttctt tg
//
LOCUS       KCLJ01002097             613 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 233737cal ultra-conserved element locus
            uce-3799, sequence.
ACCESSION   KCLJ01002097
VERSION     KCLJ01002097.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 613)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 613)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..613
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="233737cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>613
                     /note="ultra-conserved element locus uce-3799"
BASE COUNT          172 a          112 c          138 g          191 t
ORIGIN      
        1 tgtattatgt tcatgcagca atgggttgtg gtagtggttt ggatcattta catgacatcg
       61 ttcctatggc tacctaggtg cccaataaag actgagggat tcaggtaccc ggtaatggct
      121 aaattatagc agtggtcaac agagtaccga ctaagattag atgagataca gacaattaaa
      181 gtactgcagt attagcagaa caagtcctgc ttaggaagtc ttctaacaat tacgaacaat
      241 tctttagaaa agagccacag tttacatgtg cagtcagttg ctttctaatt gctacagcag
      301 gctaccactg ggaagaacaa aggaaatatt tagcacatcg taaattcttc tgcagccctg
      361 ccgagtggct ggagttcaga ttacaagttt ataaccaaca tttgagagca atttctcctc
      421 cactttgaga aagtgggtgg ggaagctgtt cgacactttc ttcaaatgcc tgaagtaatg
      481 tgtgcctgaa agaaatgcct tccacttgtc ttttgattca ggcttgtact gttatatatt
      541 cagatgaatt tgccattgtt gttcctgttg ctgtaactat tatcgctatt gtgggtgatt
      601 tgctggaatc ttg
//
LOCUS       KCLJ01002098             569 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 233846cal ultra-conserved element locus
            uce-2858, sequence.
ACCESSION   KCLJ01002098
VERSION     KCLJ01002098.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 569)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 569)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..569
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="233846cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>569
                     /note="ultra-conserved element locus uce-2858"
BASE COUNT          151 a          138 c          125 g          155 t
ORIGIN      
        1 ttgctcccat cttctgcacg gagcctacct tgacaaagtt cctcttgcta tctttagtct
       61 tctccctgga gcatctggcg catcagggca agagggatct cagccccaca gcttcatctg
      121 ggcctgttaa ctgtaactac tgatgtcgtt tacaaggata aacccttaaa gccaggccaa
      181 ggtagacgag gaaagaacac tggagcaatt ccctttggac agcagagatt ggtgttcaag
      241 ttattgaaaa tctgtgtaac tcattttctc ttttgtcata cttaaaaaat ccatgaagtt
      301 tggctgagtg caaacaataa gcttttatag ttgctgccct tgttcataaa tgtgtaatct
      361 tctgggacca tcagaaaagc tttggtacag caaattaaaa ctctctaaac tttcctgtgt
      421 ctccttggac attttgtaga cctgcaaata ctaggcagta atcaatataa taaggcaagc
      481 tggcagctcc tgagtcaggg agcccagtgc agcttcctcg cagctccaca cggctcctgc
      541 caggggcacc gaggacgctg gcacaggga
//
LOCUS       KCLJ01002099             629 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 233960cal ultra-conserved element locus
            uce-350, sequence.
ACCESSION   KCLJ01002099
VERSION     KCLJ01002099.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 629)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 629)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..629
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="233960cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>629
                     /note="ultra-conserved element locus uce-350"
BASE COUNT          201 a          116 c          113 g          199 t
ORIGIN      
        1 aagtaggtgt tgtataacag attacgggga tgcggaggac atctgtccca ctcagtgaac
       61 aggccttgga acagatgtct caaatttctt caaatccaga acatgctgtc catttttctg
      121 ttttttcctc tctgagtacc taagtattat ctttaatgca taaaatatgt aaattcttaa
      181 agcatcattt tgctctttag tgagtttaga tattacaaaa cggtttaatt ataaaaacag
      241 acagacctag tcctgggacc tgtgcagcta gaaataaatg tgcaatcaaa actgcaatta
      301 cctgcagaat ttagtgtaaa cagatcagca atcacataac aaacacaggc tagtttgcat
      361 tctgatatga atacagttag atccaaagca attttccttt atttatctta gctgctcagc
      421 ataaataaag caagggcatt gaagcaatta gcataattag agtatcgtgg tcaggccctg
      481 tgtgatttct agagacgttt cacttaagaa ttctttttcc cgtacaagag tttccctgag
      541 ccactaaaat atcgctttgg gcatttttgt atttcaaatt tgcaagttgt caatttgaaa
      601 aacccttgac acaaggatgt gaaagcatc
//
LOCUS       KCLJ01002100             721 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 234070cal ultra-conserved element locus
            uce-3981, sequence.
ACCESSION   KCLJ01002100
VERSION     KCLJ01002100.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 721)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 721)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..721
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="234070cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>721
                     /note="ultra-conserved element locus uce-3981"
BASE COUNT          213 a          144 c          143 g          221 t
ORIGIN      
        1 tatgtgcata aggcaaataa aaaaataatg gaagggtatt caaaccttct acatttgtgc
       61 agtaacctct aattctaagc acagtgatga actgtaagta aattttacca tagagccatg
      121 ttttccttag cctctccatc tgctcatttt tgacacccct gtcattaact gtcattttcc
      181 tttaaatata cagtgaagct gaaaggccag ctctacatca catcatttca gattaggggc
      241 agttcctttg agctgagcac tgtttaggtg tcagaaagaa gtctctgacc tctctcgtac
      301 cacactgccg cagggcctta attagtactg actccagcca ttactgcaga gaggacaaag
      361 gcgaccacat tatttttcta cttaggaagt tagcgtctga cctaataact tgtccaggct
      421 cgcaggacag tgtaacggcc gcacaatggc agtggggatt atttgtcaga ttctttgctc
      481 ctctgaatgt aggaaaatca gggaagttag ctgttatatc cttcagtcct gcatgttgat
      541 ttgtcatgga gaaaatgaca gacagcaaag gagtcagata ttcagaagag tgtgataata
      601 aagtgttaga agtatctgat tatttaaaat atcactcatc tttcaagatc tgttctgttg
      661 tttagtagaa ctttatcact tatttcatta agaagctcaa gtctagagtc aaatgagctc
      721 c
//
LOCUS       KCLJ01002101             657 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 234180cal ultra-conserved element locus
            uce-1092, sequence.
ACCESSION   KCLJ01002101
VERSION     KCLJ01002101.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 657)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 657)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..657
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="234180cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>657
                     /note="ultra-conserved element locus uce-1092"
BASE COUNT          195 a          138 c          110 g          214 t
ORIGIN      
        1 tttatttcag ttcattttgt caaacaaatg agctgaagat aaatactact gaaatactat
       61 agtaaattta aaactccagc tgtaaaactt tggctgcttc ggagtattct ggagaatagt
      121 aaacatggag acctgggtga ttttcactct ctgtgccttc ctttctacct gagtcctttc
      181 cactttctct ccataatgcc atgttggagt acatcctgct tagcctccaa tcaacatttc
      241 aagcactggg atcatgtttg atattgtcag atggcctgga aaattaaaaa cccaattaaa
      301 ggctcagcac gcgggtcagc tcttctgcat atcaaaaggc ctcctctggc tattctgctc
      361 aaattgtatc tgttaacagc tcactttgca gagagtgaaa tagcgcagcg tttatgagta
      421 ataagtacct tccagctgat acatttcaaa cacaaaccac tttcatggcc ctggcaaaaa
      481 gtacaagtca taatcaaatt gtcaattttt tcctgcgaga tgcatagatc cattgtaact
      541 gtgattgtta aagaaggaaa tgcattttat tcacacgttg ggaaaaaaaa gatgcacatt
      601 ttccctacaa ttaaagattt tttgtcactt ttttacattg cctttccttt acatttc
//
LOCUS       KCLJ01002102             852 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 234290cal ultra-conserved element locus
            uce-6410, sequence.
ACCESSION   KCLJ01002102
VERSION     KCLJ01002102.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 852)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 852)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..852
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="234290cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>852
                     /note="ultra-conserved element locus uce-6410"
BASE COUNT          277 a          181 c          149 g          245 t
ORIGIN      
        1 aatgaatgtt acacactgaa agtgccataa ctgattaaac tacaatttcc cactaccaga
       61 cagagagaga cttgggaact ccagcagtgg acaactctga tgttctgcca gcaggccttc
      121 agggcacagt gtggtattta gaaaaacaca ctgtaaattc catatgaata cattctaaaa
      181 gactgtgtgt atacaacagg ttttaaagaa cattagatga aacagcttag gtttgtagcc
      241 gatgagccat gcaaaatgga tgtgttttaa caattttaga atcattacaa ggctgcgtta
      301 gagaatattt ctgttggatt cctctgcccc tctccccacc tccccaaaca ttgcttgtgc
      361 tttgctttca cataaaatct ttcttttgtc agtctctttg ttggtgcaaa attggcagtg
      421 gttcaaattc aaagtactcc tattcattta ctgaccatta aaccaatgtc attctagttc
      481 acatcagcca gagagctaag ctctaaaaaa cataaaaggc ttgcttcacc actgacgaat
      541 aatgtgtaca tttttacaga gcttaaacct taatgctttg cctgaaacta acaatacagt
      601 ataccttatc attccttttt cacaagcagg cagctgctga aacgcttgcc acttcaaaat
      661 atcaattgct tgccagagtt gtcctcaaca caccctgtca aactcatgta tattgtgcaa
      721 tgaaaatggt gcaggactga aagctagaaa ttgtgtcaaa ttctgctgta atggtatgat
      781 gtgcaaagaa caatgtatga caaccgtaga gactacaaac aatagcaatg gagccaaaca
      841 ctacatatat ca
//
LOCUS       KCLJ01002103             324 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 234403cal ultra-conserved element locus
            uce-6016, sequence.
ACCESSION   KCLJ01002103
VERSION     KCLJ01002103.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 324)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 324)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..324
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="234403cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>324
                     /note="ultra-conserved element locus uce-6016"
BASE COUNT          116 a           64 c           74 g           70 t
ORIGIN      
        1 tgtcttcttc taagaggagg ggggaggaac aggaaagaaa taagaaaaaa agccccaaat
       61 gaaccctagt aagtagaagc tggtaatccc taaagcctca gagtagagtg caaagccctg
      121 gaagaaagaa attaataact ttcaaagtat gaccttgaaa atggaattaa cagtattcct
      181 cccttttaag ccttcatgat aataaagatt tcatcttctg aagccctggc aagagtcaac
      241 agactaggaa aaattgcttc ctgcagagca gctggcaagt gcaaacccgg ccccagggag
      301 tgagatgatc tgcatgatgc acat
//
LOCUS       KCLJ01002104             633 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 234503cal ultra-conserved element locus
            uce-5294, sequence.
ACCESSION   KCLJ01002104
VERSION     KCLJ01002104.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 633)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 633)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..633
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="234503cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>633
                     /note="ultra-conserved element locus uce-5294"
BASE COUNT          172 a          131 c          149 g          181 t
ORIGIN      
        1 tcatggccaa tggtatttat tggatcatat taaaggtgtg ggaattgctc tgcaggctct
       61 ttatctgcct aaattaagtg tttagaaaga aggcaaaggg agaaaagttg aagaggtgca
      121 gaagctttct tcctggcagc tgggctccct gcagttgact aaccccactg ctcgacagtg
      181 gtcatagttg ctttggagaa tcacgtctca gctcttttct ctgcaccacg ccccccctcc
      241 aaaagcaagg aaatggatgt gcattgatgt aatttagtac cttggagacg cggacaaatt
      301 agtgtagaac attatcacta gttaattatg aatgaccgat taatcaacct aatctaatat
      361 tccacattat gttgatgtta ttaaagtgca tcatgaaaat gacagatcgt cttcatttgc
      421 gttctttggc caaatgtgca ctctgcagtc atgatgtcaa atagtttgcc agtttgaata
      481 tccgagttaa gtaattcccc aggatgttta cctgcaccct ggcctccgtg aggttgattt
      541 tcagagccag ctcttcccga gtgaacacat cggggtagtg ggtttgagca aaaacagctt
      601 ccagggcctc gagctgatgg agagaaggag agc
//
LOCUS       KCLJ01002105             251 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 234604cal ultra-conserved element locus
            uce-7466, sequence.
ACCESSION   KCLJ01002105
VERSION     KCLJ01002105.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 251)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 251)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..251
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="234604cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>251
                     /note="ultra-conserved element locus uce-7466"
BASE COUNT           51 a           94 c           59 g           47 t
ORIGIN      
        1 catttaacac ccattcttct gcctcttgtc cccgcgcagg caccgagagc gggcgcagct
       61 ccccctacta tagccagtta gatgtgaggt cctccactcc aacctcatac caagcgccca
      121 agcatttcca catcccaggt aggctccgga gcgcccgcat gtgccgtgcc cgctgtgtcg
      181 catgcccagc tccgccgcct ggagccagga tctaggagag gccatccata aacaggacct
      241 acgccttgaa c
//
LOCUS       KCLJ01002106             441 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 234712cal ultra-conserved element locus
            uce-887, sequence.
ACCESSION   KCLJ01002106
VERSION     KCLJ01002106.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 441)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 441)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..441
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="234712cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>441
                     /note="ultra-conserved element locus uce-887"
BASE COUNT          132 a           80 c           91 g          138 t
ORIGIN      
        1 ggagagaaat tcataacaag gggccgaaga gctgggcaga acaacttgtc aaaaagaagg
       61 aaattccact acagattagc ttatttttaa gcatgtcaag ctctacatac aaacatgata
      121 tattgcttcc ttgtaatgtc tgtttaggcc cagatgctcg aggcagtgtc agggagtgct
      181 gtaaattttg tctgagtcag ggcaattctg attgatctct gagtgtaaaa tcgataagaa
      241 gacactgtca ttttcttaaa ggatgagcta gaaaaggaaa ataaattaag actccactga
      301 atgtctatct ccagttctca ttaattcagt gtggtctgta ctttgttaat gttatgtcca
      361 cagctttaat cttccaggtg ctcttcctgc agatagtcga cagcagccct ttattatgtt
      421 atgtatattt catctacacg t
//
LOCUS       KCLJ01002107             697 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 234813cal ultra-conserved element locus
            uce-2088, sequence.
ACCESSION   KCLJ01002107
VERSION     KCLJ01002107.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 697)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 697)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..697
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="234813cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>697
                     /note="ultra-conserved element locus uce-2088"
BASE COUNT          210 a          141 c          148 g          198 t
ORIGIN      
        1 agagcacttt tcagccctgg gagattgaga actttgaggc atatccagac ttttttggga
       61 gctgccagcc ccaaagccca gcagacacct cagggaggct gaaggaactc ttacaatgcc
      121 tgtccctgta aagtctgtca ctgcagttca caagagacaa ctaatcaata accgtggaac
      181 caaataggca aataaaaata aaatccatta agatggcaga ggtatttact tgctgtattt
      241 acaccatgga gagctgcact gtcactcagt gcttccccta cacaagatag aagcaatttg
      301 tgcagactga tcccagtttt ctcattaata tgtaaatgag gcatgccagt tgttaggtta
      361 gaagaaagct gtcatgttta ttgtgacaga tttaatggat gtgtttggat tgtgcattca
      421 atgtgttttc aagagcatgt cttatctttg tttaggcagt aaatcaaaca tgtaaacaac
      481 aattcattag catctgtcag aagctcaaag ctacattgtt atagttgaaa atctccccag
      541 aggtgaaaaa aagtatatct gacttattcc agattagttg gaatattttc tttctgtttg
      601 ccaacttgta agtgatgatt gagctgctgc ataggtgcac tcaggtagca ttaggggtca
      661 gagagaaacc cctggccaca ccacctgtgc caccact
//
LOCUS       KCLJ01002108             658 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 234926cal ultra-conserved element locus
            uce-3114, sequence.
ACCESSION   KCLJ01002108
VERSION     KCLJ01002108.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 658)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 658)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..658
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="234926cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>658
                     /note="ultra-conserved element locus uce-3114"
BASE COUNT          166 a          136 c          158 g          198 t
ORIGIN      
        1 ttaccatgct gtggagccag ccatctgtca gcaaaacagg aaggcacggg ttccttctcc
       61 ctcctgggct tgtttcacta tttttgggag ctgtacttct gccctgcgca gcgccaggct
      121 ggtgcgatct gaggcaaggg ctcccaggcg agcgaggggc caaagcctgg agctgctgct
      181 ctgcccatct gctgtggctg gaggtgtatt cattattaat ggaggtagtg gctgttgctg
      241 ctcagatatg cagccctgcc tgggtaaatg agacattctt cagcaaattg cttcggtttt
      301 tgattgctga ttgtacgtgt gtcaccaagc tgactcaagg ttcatcgatg catgctcagt
      361 aaattagaaa gaacataact atggatcaac caagagaatg aattctgtgc ctacaatgac
      421 ccagggccat ttaattttct gcttaatttt gttgcagtca gtttgcattt tgggttatta
      481 tgcagtagga aattaacaat aaataacaaa tttggtcctc ctgtgcttgt aatgatattt
      541 ttataaatct ttgtaatgct gtttttcaaa ggatcaaggt ctgcgccagt ctgatactcc
      601 agcaagtatg cagggaggaa ataaagagaa aaatacatta ttcttcccag ataatctt
//
LOCUS       KCLJ01002109             605 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 235034cal ultra-conserved element locus
            uce-7108, sequence.
ACCESSION   KCLJ01002109
VERSION     KCLJ01002109.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 605)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 605)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..605
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="235034cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>605
                     /note="ultra-conserved element locus uce-7108"
BASE COUNT          179 a          116 c           96 g          214 t
ORIGIN      
        1 tttttttatt gtcacatcca tggcattttt aaagtaaata tgagtacaag gtttatatta
       61 ttttaaatgt atattgtatt tgtcttccca acactgtggt ttttagtact gtgaataacg
      121 tagtatggag ccagcctatt aaacagcctg tttttgtaag gaaactgtta gtccacctac
      181 aatattctat tgcttactgt gttcttccaa tatgcttagc attccacaac ctaaatgatc
      241 atttgttgaa caaattcatg cttttattag tcaaaataca gagaaaacag agcccccctg
      301 tttcaagata tttgctaatg cacggttaat tatcacatat agcttactat aattcatttt
      361 acagggagac ctcctgcagg taacatacta gcagtttatg aagcaaaata acctcactat
      421 agattagaac tgtttcacta ctggtcagac agttgctgct tctaggcctt ctcacttcac
      481 attgctaatt tgaacaaggc tttattttta tatttgtcag cagcaagact gtagcatggt
      541 tgttaaacct ctcccaggcc taattagagt agcaatgcta gcattcataa tgaatctcgt
      601 gtcct
//
LOCUS       KCLJ01002110             488 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 235144cal ultra-conserved element locus
            uce-3051, sequence.
ACCESSION   KCLJ01002110
VERSION     KCLJ01002110.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 488)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 488)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..488
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="235144cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>488
                     /note="ultra-conserved element locus uce-3051"
BASE COUNT          153 a          106 c           87 g          142 t
ORIGIN      
        1 aagtccatgt gagactggcc agacattaag gaactctttc tgttcctttc tgattagatt
       61 gggtcttaaa gatgaaagct ccatttcatg actttatcca cctatccaca gtatgttccc
      121 aagctagtta aaattaaact tagctatcaa aatgctaaac ttgatagctc atttatcttt
      181 ctgtctccca actctacatt acaatacagc agtgattgat cttgcgtctt caaggtacta
      241 tatagtataa aaactaagag aagattaatt aaaagccatt gcatccagac aggtttttaa
      301 ataagtttta gatttagaca atatatcagc tgaggcaaaa agattccgag accataagcc
      361 tgtaacttca agtaagtttc gctttccttc aggacacaga aaaccccatt tcaccacaga
      421 ctagcctcaa agtctgcttt ggtcaggcag gcccgtggca ggaggcagga agctgccaca
      481 ttcctggg
//
LOCUS       KCLJ01002111             514 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 235253cal ultra-conserved element locus
            uce-6253, sequence.
ACCESSION   KCLJ01002111
VERSION     KCLJ01002111.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 514)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 514)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..514
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="235253cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>514
                     /note="ultra-conserved element locus uce-6253"
BASE COUNT          143 a           93 c           91 g          187 t
ORIGIN      
        1 ttgcatgtct cacacgttac cagcagatca catccaccag tcttcactat aacaaattgt
       61 attgatacct ctataaactt ctaattccca gaaatgaaca gttttgcttc ttaggaattc
      121 tggggtacct tctgtcatct tctctggcat atagacaggc ttcactatta acagagttcc
      181 ttgagtgtat cttgctcttc aggttgatgt actgtattag gatttgttgt atattgtacg
      241 atacacacat tttgatctca tatgtaaatt tgcattaatt gctaactaac agcagatatt
      301 ctatttaatg gcttcttctg gctgtgggat catagatgtt taactgcatg gatgtatctc
      361 tgcagaatca gaactagcaa ttgtgtgatt tttacaccaa taaaacagca caatatttta
      421 attttgttga ttcatcttta cctgggaatt caaactcatt caaataaggg ggagggtttt
      481 attacaggtt tgcaggtaat tttgtggcat gtac
//
LOCUS       KCLJ01002112             801 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 235575cal ultra-conserved element locus
            uce-2040, sequence.
ACCESSION   KCLJ01002112
VERSION     KCLJ01002112.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 801)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 801)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..801
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="235575cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>801
                     /note="ultra-conserved element locus uce-2040"
BASE COUNT          252 a          168 c          142 g          239 t
ORIGIN      
        1 ctgtattcac ttgttgctgg ctgtacacat ggaaagcaaa gcagcattta ccacgctgct
       61 aaagttctga attaacagct gacgtttttg acctggctcc cattagctcc cattaccacc
      121 tggtaacagc ctgccttcca catgctgtac ttcacagata tcagccatta tccccacccc
      181 ggatcagtcc ccaggcagta tgctaacagc ctcttctaca agccaattta caaggatctg
      241 gtcatgttta cattagcctt ctcccaatgc atgaaaagag aagagtgcgc ttcagaatag
      301 aaatgagcaa atatgaataa ttcaattttc cttgtggcta ttaacacatt ttccttgaat
      361 aaagtgataa taggttatca tctgtgaaat ggaaattgca taacagagag tttctggtta
      421 caccagagga aattaatttc acagcacatc tgctgggacc tgacttgtga atgctaagta
      481 tgagaaaatg cagccgttca gcttcactac ctttataatt agattagcat gcctgcaccc
      541 atgctggaat cctcagtcta gtcaaaagaa ttactgttcc tttcttcaga tacctaatat
      601 ttgtaataat gaaatgactg aggcaattag ggaaagttag aaatgaatta tgaggccata
      661 ttatattaac cagatgctgc ttaaagtgac tgactttgtg ttatctgtct agttaaatac
      721 agtacttagc cctgctatca ataaatgtaa tgcatcaaat taacacacac aaaaactgac
      781 tttaagtaat gttaagattg t
//
LOCUS       KCLJ01002113             398 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 235687cal ultra-conserved element locus
            uce-7008, sequence.
ACCESSION   KCLJ01002113
VERSION     KCLJ01002113.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 398)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 398)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..398
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="235687cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>398
                     /note="ultra-conserved element locus uce-7008"
BASE COUNT          133 a           79 c           70 g          116 t
ORIGIN      
        1 catctgttta ccaattttct cctggtaaca tcacctcccc agaaataact aaatcacctt
       61 cacattcctt tcggtgaagc cattaagcct agaaacatgc tggtttgggc aatacagaaa
      121 tcaaagtggt agcacagcag agaagatctg tgttaaagaa caaaaatcca caggctgctt
      181 caaatatcaa caaggaaccc tgaaattttc tatcaatttc ttttcatggc cttgtgacat
      241 tttcaactaa aaactatatt gcttaacatc aaggcacttt gagagagctt cagttggaaa
      301 aggtaatttt tgagtgagac tcagcagaaa aaggtaattt ttcagagagg ttcactggaa
      361 aaaggtaatt tcagaaccaa ttgctgcatt cttttctg
//
LOCUS       KCLJ01002114             667 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 235792cal ultra-conserved element locus
            uce-5886, sequence.
ACCESSION   KCLJ01002114
VERSION     KCLJ01002114.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 667)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 667)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..667
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="235792cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>667
                     /note="ultra-conserved element locus uce-5886"
BASE COUNT          196 a          154 c          185 g          132 t
ORIGIN      
        1 caccctcagg ctgacaccca cattctcttg cacaggaaga tagggaaaag cagggaacag
       61 gcagcccatt tatcccccgc gacacccagt ccccttgcaa gagtaattta tggtgtaatt
      121 tgggccgcat ccaacttaat aaagggccac tgcaaattag tgaacaggtt taaatgaaca
      181 gaagcaatta gtgctcggag gagcccatca aagaagttgg gccaatatca gagtgaaact
      241 gaaactgcaa gccaggagca gaggctggct ggcgcgaagt ggtgatggga aggtggcgtt
      301 taatgggaaa ggaaaggaaa ccctaaatca taaagcgtga caagggccat tgtgggccag
      361 ctgacaaatg aaaaagaatg gcattattcc tttaaataac agcagcagtt agagaggaga
      421 cagctctccc tggcttgccc tcgcttccct ggcctgctcc actcggccac gcaggcggcg
      481 aggaagaatc agaggtcttt attaattatt aaataacgac tccctccata gtgtgataga
      541 taacgttcaa tctaggcgat ggattcaggc catggaggct aatctgtaac actgcagctc
      601 cccataggga tgggctctcc cagtcctgga ggaagccgag gcaggggggc aggaatcgtg
      661 ggcagga
//
LOCUS       KCLJ01002115             442 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 235905cal ultra-conserved element locus
            uce-4026, sequence.
ACCESSION   KCLJ01002115
VERSION     KCLJ01002115.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 442)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 442)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..442
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="235905cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>442
                     /note="ultra-conserved element locus uce-4026"
BASE COUNT          170 a           69 c           68 g          135 t
ORIGIN      
        1 aagaaagcct tgcataaatc ctgacagaaa aagtggattt aaatcaaact aataggttgc
       61 aaaacatatg aaatatgctt tgtactgtgc ctgggagaca catggccaaa tccatattca
      121 aaaacaaacc agagtgattt gaagaataaa tcacttgtca tcgtgatctt taaaaatgcc
      181 agaatttaat gcaaaaatat aatcctaaca tttattgcag caaaaataaa tgtcaacata
      241 ttagacttaa ctggctaagc cttgtggtag catttctaca aagtgaaagg aacatgacaa
      301 gttgtatttc acgtttttta gaataagatt tggtcttctt tatcataagc agtagattta
      361 aacactttat tttaatttac ttcacagtat tgagaaaaac attgactcag ataagaagtg
      421 gaataccata tacacttttc tc
//
LOCUS       KCLJ01002116             435 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 236009cal ultra-conserved element locus
            uce-7068, sequence.
ACCESSION   KCLJ01002116
VERSION     KCLJ01002116.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 435)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 435)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..435
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="236009cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>435
                     /note="ultra-conserved element locus uce-7068"
BASE COUNT          107 a           82 c          103 g          143 t
ORIGIN      
        1 tgggtttatc tgaaatgctg aaaataatct tcacctagat taaattgttc tttctctaaa
       61 atagcagtga gtggaaagta agaggtagtt tgaaatttca gactggcaga ctaaacccag
      121 cgattcacag agtgaagaaa cttcacccac aaaatgtgtt ctgagttgta gtcagtgatg
      181 actgatgcct gccttggtgt tctgtctctg ggctgggtct gaggggaggg agtctttccg
      241 gagacgtgtt gctatgaaat gtgtttgtat tgatctttat gtggagaagc tattcacaag
      301 gtttaaacct gtcctcccct ccttcagtaa gcgactctcc cagccagctg gaggccttct
      361 ggattctatc agtaatatct ttgggtaggt tagaacactt tcacctcctt gttttgttta
      421 ttggtttcaa tgtac
//
LOCUS       KCLJ01002117             437 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 236114cal ultra-conserved element locus
            uce-4200, sequence.
ACCESSION   KCLJ01002117
VERSION     KCLJ01002117.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 437)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 437)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..437
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="236114cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>437
                     /note="ultra-conserved element locus uce-4200"
BASE COUNT          154 a           93 c           62 g          128 t
ORIGIN      
        1 ttccacccca ctttttctac aatctgatca ttttagtttg gaaaatgcaa ttcatgtctt
       61 acttatttta gcaacagaaa aatgcatcag actttagatc aacccaatat ccttcctcac
      121 tcaaatagtc taggacatct caacaaacac ttgaaatgct accaaacccc agccgccact
      181 tcacatgatt tatgatgtca ttaatgtcaa gctatcagtg gacaagagta aaagagacaa
      241 cagcaaagct gactaaaaac aaatagtttt gattaaactc aaggacgttt ggtacagctt
      301 tcagcaaaaa ggcattaatc atttccaaag ctgacctttt tttttcatcc taaatgcaaa
      361 aataatatgt gtagggattc ctgaagtcta ctgtctatgt agctggatta aaagtaatta
      421 acagcaatag catcacc
//
LOCUS       KCLJ01002118             827 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 236224cal ultra-conserved element locus
            uce-7011, sequence.
ACCESSION   KCLJ01002118
VERSION     KCLJ01002118.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 827)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 827)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..827
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="236224cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>827
                     /note="ultra-conserved element locus uce-7011"
BASE COUNT          274 a          147 c          182 g          224 t
ORIGIN      
        1 tctcttttaa aggttacatt tgcatttaca aagaactttc aagcaattta actacaatga
       61 attttaacaa ggcgcttcct gttctgactg cttgcgtatt tttaaatttt atgagactct
      121 tctggcagag ttttgtagcc gttaagatga aagcctggat gcatgcatac ttgaaaagtg
      181 gaggaggagg aaaaagaaga ataaaaagaa gaaaggaaaa taatcaattt ggtatcaaat
      241 ttattccaaa gccgaaaagt gcattttttt ctgattgtga aagaagacat gcagggaggt
      301 cgaaggtcaa gcaaagagga gacagtattg tgtaggaact gtcacgcatc accacctatt
      361 ttgacatgca cagggccgtt tgttgtctgt cgaacatgca aattaagtgc ctgctgtcat
      421 agctagccga tatctgaaag tggaaaatga gaccacctgt aaccagtgaa tggagtgatg
      481 gacaagcatt cagagctcgt catttccaac gccattcaca ccacctccga attgcatatg
      541 acatgtaaaa atcttttctt aatattcaca accgggaagt ttggggaatt atggaggctt
      601 caactgctgc atctaatggg ttctccaagc agacagctgt gactgtgagc tggcttgata
      661 attaggtgtc caggaagatt ttatgctatg aatcagttaa aagggagaaa agaaaaagaa
      721 aataatggca agcaaaactc gctggaatgg aaattatatt aacccttgca tatcttcctc
      781 agcacttggc acaattcccg tgaagcaaga tttgcagaaa ccagaca
//
LOCUS       KCLJ01002119             417 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 236334cal ultra-conserved element locus
            uce-4080, sequence.
ACCESSION   KCLJ01002119
VERSION     KCLJ01002119.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 417)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 417)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..417
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="236334cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>417
                     /note="ultra-conserved element locus uce-4080"
BASE COUNT          128 a           74 c          109 g          106 t
ORIGIN      
        1 gaagaaggag aagatgggag agaggaggaa aagctaagcg actgtcagat cagctcagga
       61 tctccattag aatgcagagt gctccagagt aattacaaaa cagctgtaat ggaaaattgg
      121 tagtcaaacc cattttccac caactagaac ggtgaatggg ctccattatg ttcctaattc
      181 tcattaactt aatttgcata ggaaacaatg aaggaatacc taatgagtta gactcagcta
      241 gcagcagatc gatacccctg tgaacagggg ttcgacccat aattacagga catgtggcaa
      301 agccagaatg tttctcctct tacatagggg agatggaaag gttggccttg ctgttgttat
      361 ttatttaaag gctggagatg tggtgcctac aggggtggga gttccttgct gtttgga
//
LOCUS       KCLJ01002120             836 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 236443cal ultra-conserved element locus
            uce-6210, sequence.
ACCESSION   KCLJ01002120
VERSION     KCLJ01002120.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 836)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 836)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..836
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="236443cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>836
                     /note="ultra-conserved element locus uce-6210"
BASE COUNT          201 a          230 c          166 g          239 t
ORIGIN      
        1 caggcagctg agtaacagtt gctctaaaca tctggaatcg acactttagt gttagcgtgg
       61 aaataaagca tcgtgtgacg atcctgtcac ttgaggtttg caaacccagc tctagcagca
      121 ggatttttgg gaactggcac gttcttggac ccagactagt ttgtctggtt taagtgtgca
      181 ccgtggtttt tacaggactg aatttacctg gcaggtgagt gaagtcctcc cgagccagga
      241 agcttaccct tttgctgttg tatttgttag ctaatagatg gttgtactga tggcttgttt
      301 ttcatttttt ttatgctttt tggtccatct attaataaaa atgaacccgt tacagagtca
      361 ccatcatgtc tcttctcacc accctctgag tctgcattag ccagccaact agccctttca
      421 gcgtcatgtg accagcgcgc cccatgcagc ttggctggtg tcgtttcaca tgacccaggc
      481 atggccagtc gtcaggttgc accgcccttt ggttcccgag catgctgttt tctctcagcc
      541 ttctctccaa ccttaaccgg cagcagccac ctcgaccgcc cacacattcc cggccaatca
      601 gctcagctgt ttatttacca aatgtcttca caacaactac agcagcagcc ttcggctaac
      661 aaaaaagcag gaaaaatcca caacaccccc ttcgccaacc aactaaatac aacgcaacat
      721 ctggcaaaac cttttcagca aattcttctt ggcagtcagt ccggcagcct cacctcacca
      781 tttctagctt gttgaaacca aagacttgta agtttttcct gcttatacag tttact
//
LOCUS       KCLJ01002121             418 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 236550cal ultra-conserved element locus
            uce-5986, sequence.
ACCESSION   KCLJ01002121
VERSION     KCLJ01002121.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 418)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 418)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..418
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="236550cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>418
                     /note="ultra-conserved element locus uce-5986"
BASE COUNT          145 a           72 c           78 g          123 t
ORIGIN      
        1 tgctgaagat acaagcttta aaaatcattg gtatttagga aaatccaaag ctggggtgat
       61 gcatgctcag gtgctaattt atttacatca attaatttca ggcccctgat gtaaaccaat
      121 tagtattcaa cacttaatgg agtcattatc tgtcagatta gcttttagaa atgcttgtca
      181 ctgctacagg accaggcagc agaactttgc taataaaact agcagaatta atggagtgaa
      241 cagcatagat aatgacttaa tgtggaacat acagtataga aaagagactg aacaactgtc
      301 ttcaagaaat taagatatca ttgagctggc tactttattc caaaactgag ctcacatggg
      361 ctctttggaa acatcaaagg tgtctcgcta agccttttat ttcataagaa ataacttc
//
LOCUS       KCLJ01002122             633 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 236658cal ultra-conserved element locus
            uce-74, sequence.
ACCESSION   KCLJ01002122
VERSION     KCLJ01002122.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 633)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 633)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..633
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="236658cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>633
                     /note="ultra-conserved element locus uce-74"
BASE COUNT          189 a          126 c          118 g          200 t
ORIGIN      
        1 accaaaggag cctcaggaat taattgcagc cttctaataa acacaatggt gtaatgacgt
       61 atttaacatt actgcttttt gtgtgattcc aaataaattg ccaatccact gcgatactaa
      121 aacaattacc atcccgagga taattaatct acaatttttt cacattagat catatatccc
      181 ttttgatggt cttcagctgc tgtgtattta tttttcattt ttgctggtgg tgcaccgccc
      241 catcagtgct gacatttaaa tgagtgagtg ttcaacacaa atgtgatcgt ttgtggagca
      301 tccaacgtgg caccatactg agatgattgc ttctgggagc catccatgcc ttcccgaata
      361 ggggggaaaa gccaggcaaa attttatcaa tttacatttt tctgtgatta atttttatgc
      421 aaatgagggc ccgaccgtgc tcccatctca cctgaatcat gcggatcatc aaagacaaat
      481 tgagcatcac ttatttaaaa aataggcttt aaactactct acagctgtgt tggaaaatgc
      541 taagagtggg gcatgaactt ttctaatgta acaggaatag ataagaaaat gcttctcttt
      601 gcatttttgt ccacactgtg ataaacatga gtc
//
LOCUS       KCLJ01002123             578 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 236767cal ultra-conserved element locus
            uce-5812, sequence.
ACCESSION   KCLJ01002123
VERSION     KCLJ01002123.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 578)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 578)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..578
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="236767cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>578
                     /note="ultra-conserved element locus uce-5812"
BASE COUNT          191 a           94 c          107 g          186 t
ORIGIN      
        1 ataaatccat tatttccatt ccctaaacag gttactgtag atcttactct acctgggagc
       61 tgggtaaaaa cagccagtta atgtactaaa ggtcagagtt tcagaagtgc tctacaaatg
      121 cattacaacc aactgctaat aatttttttt aaggggtctg gtcatgtcca agggaatgcc
      181 agctacattt ttcttaatgt atgagcacaa gttacacata acaacctaac aacacaatac
      241 tgcctcttta atgctaatct attccttgca atctactaga tacatgtaga atcattggtg
      301 tgtatcaaga gagcaaaatc agattctgaa aatatctgaa aggatgcact agagtgtaca
      361 taataatgta ttttaatctg ccaggcctta aaattaatca tgaattccca cagagatttt
      421 aataattttg agatgatgtt ttcatatagt gatattattg gacagagttc ttgaaatgtt
      481 acatggaaat gggtggggga gggaaaaatt tgggccattt ttcaattacc aggttagcta
      541 agttacagat acaagagcta ctgtttaatt ggttgttt
//
LOCUS       KCLJ01002124             593 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 236876cal ultra-conserved element locus
            uce-2765, sequence.
ACCESSION   KCLJ01002124
VERSION     KCLJ01002124.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 593)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 593)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..593
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="236876cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>593
                     /note="ultra-conserved element locus uce-2765"
BASE COUNT          157 a          127 c          142 g          167 t
ORIGIN      
        1 ttgttttccc tgtccttcag tcacagtgag gagagtctaa atatttcagt gactttggat
       61 tcccattcct tgctacacaa caacaacaaa agctatttat agcaataaca gttagcagcg
      121 atacagcagc ctcagacagc tataggcagc atctcacaaa tgttaactgc ttttgcactg
      181 aaagagcact gagaaataaa gatcaaagca aaaccaaaag aaagattttt ttattgctat
      241 gttttacttt gctggcagac cagagcaaag gttttctgaa catttaaaag atgaaaaagg
      301 tgaagaatcc cagaagcgat ttatcttgaa gcgagataac tctagtattg ataaagaaga
      361 caatcaggtt ggttctcggt tcgagagttg ctgaaatttt tgaaggtggg ctgactgatg
      421 ttattgttgt tcttttgttg ttgctctcct cccctgccct cctgcccctc tggcacacga
      481 accaccgtgg gtggctccga gccccgcttc agccgtggca ggtctgcatg ggtggtttgc
      541 ttggcgcagg acttgctgca tgcccgtggg gggaaagtgg ctctgggctg cgt
//
LOCUS       KCLJ01002125             594 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 236989cal ultra-conserved element locus
            uce-4761, sequence.
ACCESSION   KCLJ01002125
VERSION     KCLJ01002125.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 594)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 594)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..594
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="236989cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>594
                     /note="ultra-conserved element locus uce-4761"
BASE COUNT          178 a          106 c          102 g          208 t
ORIGIN      
        1 ttgatgccta aatgacaagc aatatattct tgctgtcagg atgaagcagg gcgatacatt
       61 tttcatatgc aaactccaga atataattgt gtgtttgtaa aagtaatttt atcaccaaaa
      121 attaaatgac agtttcatca ctttataaaa attctgctta tacaagcata tttgattatg
      181 caaaagttaa tctgtcctgc aaaaacctat gcttcagtca atgagtatca gcctggcaag
      241 cagttactca ctggcccagc tgttctgcat agaaattgga ttgtaagcag tgtaataata
      301 aggtgttttt tgaattactt gtcttctgtt ttgtccttgc agatgacagt ttgatttaca
      361 tggatcctca ttactgccaa tcttttgtag atgtcagcat aaaggatttc cctcttgagg
      421 tactatggat atagagctgg cactgttttc ttcccatatg aatcaaacac taattattta
      481 gagctgttct agctagctgc agctttatgg ttttacagtt acatgttatt tatcaatgtc
      541 ctgcccttct ttataggcct ataatcaaca aaaatgacca gaggttaaat ctca
//
LOCUS       KCLJ01002126             681 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 237096cal ultra-conserved element locus
            uce-3772, sequence.
ACCESSION   KCLJ01002126
VERSION     KCLJ01002126.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 681)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 681)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..681
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="237096cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>681
                     /note="ultra-conserved element locus uce-3772"
BASE COUNT          206 a          143 c          121 g          211 t
ORIGIN      
        1 cattgtactc agtatattaa aatgtaacat gtgcttccaa tgactcacac tggaagatga
       61 tagaacaatt ctgatgtata tgtatgtgtc atcctcagtt ttattcaggt ttaattcttt
      121 atgcaaaacc caacaaaccc taacccttaa gacttttatt tactaacgcc atttattcct
      181 aaactgcttg aaaataactt gacaaagctg acgttccaaa caaagaccac acttcctgtt
      241 cttacaggga atctggaaca ccatcaatgt tttgttcagc ttgcataagt cacaagtgat
      301 tggccacagt ccctgtgggc atgccatttc atccagactg gacggttcat tagtcataat
      361 tactataact gtacagcaga gactgcagtt ttatctcatc atacatcttt gataaagctg
      421 cttctatttc tgcttcatca gcatgtgaag ttacattatt gcagctttca ttttccaatc
      481 tgtgattaac atcggttgtt ctgcttataa aacacgcacc ggccacggcg tgaccactgt
      541 ttgaactttg ccaagaagag actctgaaga aaatttaacc aaggaagtac caacaatgca
      601 gtgtaagaga ataaagctgt tggtttctaa tgcgtttggt acaaaggtta gaggcaggaa
      661 atttctgaca actgctgggt c
//
LOCUS       KCLJ01002127             624 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 237203cal ultra-conserved element locus
            uce-1319, sequence.
ACCESSION   KCLJ01002127
VERSION     KCLJ01002127.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 624)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 624)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..624
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="237203cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>624
                     /note="ultra-conserved element locus uce-1319"
BASE COUNT          177 a          105 c          145 g          197 t
ORIGIN      
        1 ttgtgcatac tgataatcca gatgttggta ttaatatgct tattcatatt ttcagtaata
       61 aaacttgcct tccactttgt gggacagcaa cagaagatcg cctggcgttg gaacagcacg
      121 tggtaactat tttctgctat gacaattatg ttgaggcaca atgttccttg aattgtgaca
      181 tgcagaaatc gcatctcctt ttgtctttat tcgtgattga gggaaggttt tatgttcctt
      241 ttgtgataga tggctctttc ctttgcagcc aaacagggaa aaagttaatg gcgaagtgtc
      301 gaatgcttat ccaggagaat caagagcttg gaaggcagct gtcccaagga cgtattgcac
      361 agcttgaggc agaattggct ttacagaaga aatatagtga ggaacttaaa agcagtcagg
      421 atggtaaggg aaagttgcct tgcacttctt tttgtgatga ttcacctttg ccacagtatt
      481 gagtaaaata ttaattggta gtcttagtta tccttaaatt tgggagaact cgtgggattc
      541 acagctccag taatgtaagt cttgctttag actatacaca tgaattggca agatgaaagc
      601 tgttaatagc ctaggcatgc actg
//
LOCUS       KCLJ01002128             623 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 237315cal ultra-conserved element locus
            uce-7589, sequence.
ACCESSION   KCLJ01002128
VERSION     KCLJ01002128.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 623)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 623)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..623
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="237315cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>623
                     /note="ultra-conserved element locus uce-7589"
BASE COUNT          188 a          117 c          143 g          175 t
ORIGIN      
        1 tcttgaaaaa gtaagaaatg attattactg acaaatctgg agatccagca gcctcagatc
       61 actgtcacag aatagctgaa aaacccagaa gaaactgccc tttctgtttc tccatgcagc
      121 ctgtctgttc ctttgctctg gtgtaatatt ccactagagg accatgggca aagcttgagt
      181 aatgctatat ttaagtatgc tttaaaaagg gcaagaagtt tctttagttg gtgcgttcta
      241 tcagaggcaa gataatagaa tttctaaacc cattgatttt atggcattaa gaatctgctt
      301 gataagtcag tctctgtata ctggtgatca ctatctccag ctgtataagc agaactgtcc
      361 ccatttcatt ttcagtaaga aattgaggga gacttagatg tgctggaaaa tatggggaaa
      421 ataagtagca taaaatctct gttctgttga agtatggcat agctatctgt tattaaatac
      481 tggaggagtc agagagaaac agagttggaa gatgtgtgag cagaggattc ttaatctgcg
      541 ccctgaattc acggggcacc cacaggagca cttcttgtgg ggccctgcag caccaaaggg
      601 cagcctcagg caagacagct ttg
//
LOCUS       KCLJ01002129             611 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 237425cal ultra-conserved element locus
            uce-2066, sequence.
ACCESSION   KCLJ01002129
VERSION     KCLJ01002129.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 611)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 611)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..611
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="237425cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>611
                     /note="ultra-conserved element locus uce-2066"
BASE COUNT          196 a          115 c           96 g          204 t
ORIGIN      
        1 tttcttacaa aaatattttt ggaagcaaat tttccccagt attttatatg atactaagat
       61 gatttatttt gctaaattct gctcatgtgt atgctcactt actgctatac attctagata
      121 aacagatatt aatttcataa ttaaaagtaa tcttgtgtaa ataccctgca ggcctcaatg
      181 aatcaaacac atactgtgtg tcaggcctcc cactgtcttc aagtggaatg tactggctgg
      241 ataattagat agtacatatt ttttaacctt atttgcatgc atattatatc ttttgcacac
      301 tgacaagcag cagtaacaac aaaagtcaga ttaccacagg gaattcccac aaagaagtct
      361 tcatttctta taatttgcag cctaaattaa aataatttga tctttgacaa ggatgaaatg
      421 tcaagcagaa gggggtcctc tacaagccac ggcctgtggc ttctgaaatc tgcctaattt
      481 atgtcagtca cttcttaata catatttaag tattacacga gaaagatgat aaatatgcaa
      541 tctgacacct ttggtatttc cctgctgtta atttataaag gtctggcgtc ccccaaactg
      601 actggaatta t
//
LOCUS       KCLJ01002130             752 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 237537cal ultra-conserved element locus
            uce-2166, sequence.
ACCESSION   KCLJ01002130
VERSION     KCLJ01002130.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 752)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 752)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..752
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="237537cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>752
                     /note="ultra-conserved element locus uce-2166"
BASE COUNT          221 a          159 c          158 g          214 t
ORIGIN      
        1 tcattttctt ttcgcttctc acaccttatc tagtttctac attcttccca cttcagtagt
       61 caaagtgatt gaaagccgaa aactgagcag atctgtccct gcagcaactt tcctcgcgtt
      121 tctcatttag cgttttatca aacaggctct ttgtctttgc agtcccctga tgttgcctct
      181 gttacatggt gatattcttc aggtcatggg ggttaaaagg gggctaaaaa ggagatcata
      241 ttggacttgc tttacacaga catgtagcat tagacccaac gcccaataga ggaaagatat
      301 actactccta tttgatgagc agcaggccaa taaattcatt aatcatcatt ttatgcctca
      361 tcaaacacta cccaagttcc tccatgggag ttatacaaat tagccactga aaaggcagta
      421 attttagttt agctaggtaa gtgctttttg attgccttcc tgaacaatgc ttcccttgac
      481 aagctaataa atcagccctt tctgaatcag aagtgcagca agtgcgaaca ataactccac
      541 atagtttctc cgctgatttc agctggaagg cctaagagga tgatctggga tcaaagtctc
      601 ttactttatt gcagagcaaa agctttcttt atgaagaaga gctacagaga aatgagggaa
      661 gggggaaatc aattaatgag agaaaaagtc ttgaaacaaa aaggaggcct aagtctccga
      721 ttgcagggat gctgggaggc cggcagggca gc
//
LOCUS       KCLJ01002131             327 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 237649cal ultra-conserved element locus
            uce-2193, sequence.
ACCESSION   KCLJ01002131
VERSION     KCLJ01002131.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 327)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 327)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..327
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="237649cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>327
                     /note="ultra-conserved element locus uce-2193"
BASE COUNT           97 a           60 c           78 g           92 t
ORIGIN      
        1 aaaaaagcca acaccaaaac ttgtgaggaa agagttaaag ccatctgcct gaaagcattg
       61 tgtaaaacat acacacaatg ttggggaaat aagccaatta tgtgtgcttc acaggaggta
      121 ctgacctttg tgtataatta gttcttttat ttaaagcaaa gattttgaat agaataacta
      181 attagctgtc ataaatggca aattgaagat tttggccggg ttccttgggg agagtgggag
      241 gaggtccctc ctcccagccc gtactgtacg ctccggctct cctcattagg gttgttttta
      301 gttctccgca gaggtaatga ggagtgc
//
LOCUS       KCLJ01002132             621 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 237754cal ultra-conserved element locus
            uce-6695, sequence.
ACCESSION   KCLJ01002132
VERSION     KCLJ01002132.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 621)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 621)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..621
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="237754cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>621
                     /note="ultra-conserved element locus uce-6695"
BASE COUNT          187 a           93 c          120 g          221 t
ORIGIN      
        1 taaaagtaaa ctctccttca aatctttgat tttcttctgg tgcatttcct ttcttaacaa
       61 taggaaaacc tattaaaatg gtattaatct aaagaataac agctgaaaca gatttaatat
      121 tgtttagaat attttaaatg taaataagct gttttaattt agtagttgat attacatttt
      181 cactgctgct tgattttgtt tgtagagcca gaatgaagac tggggaggtt tgtctgagga
      241 tatcttatga ttaagagcag tctaaggcat tagccctttt gaccccatct aaatgattgg
      301 taactaccaa gtttaccatt ttggtggcat ggattaaatg ggtgctatgc aaagagtgct
      361 gcacgtgtaa ttgcaagggt aaactgggtg atgggcctgc aacacttgca tgatgtttta
      421 ttttcctttt atgtactaac cgcatcaact tgaaatctct gacttctact ggctttcttt
      481 ggtgttggta attaagtggg ataatgcaag ttagagaaat ggataccaaa gctaataact
      541 aaacagatgt ttggctttgt ttacttacaa tcagcccata taaacatgta tttattggaa
      601 aatgagctgt ttacatctgc t
//
LOCUS       KCLJ01002133             576 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 237860cal ultra-conserved element locus
            uce-2941, sequence.
ACCESSION   KCLJ01002133
VERSION     KCLJ01002133.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 576)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 576)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..576
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="237860cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>576
                     /note="ultra-conserved element locus uce-2941"
BASE COUNT          176 a           99 c          119 g          182 t
ORIGIN      
        1 tctcggggac agctttcact gtaaataaaa aaaaaaagag cagaaattaa tgtttgtggt
       61 cagtccccag caaccacact ctctaatgca aagcaattgc atttttacct gaaatctgtg
      121 acagatagct gaggcactaa tgtttttctc tggtaataag ctggatatgg aacagagctc
      181 ctttagaata tgtacggtaa agtggaaatg catgctttgg tgactgctag aaagcaggcc
      241 aaagatatgt caagtccaat taatgtcaat aaggaacatc tgtatttagg cacccaagtt
      301 acttaatgca aacatttcat aattatatac tatagcacac atggagcatt atgagatgtg
      361 gtgtcccagt gtgaataata ttcacatttt tcagatcagt cagcagtctt ggtctggctt
      421 tggctcagct tgcagtctcc ctgtaagagc atttctttat aatattgaat taagtacaat
      481 ccacattttt tctcttatct gtgaaatctt gtggttgtgg cttgactgtt tttataaaat
      541 gaaagatcca agtgcatgta aagctggggg tttggg
//
LOCUS       KCLJ01002134             572 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 237966cal ultra-conserved element locus
            uce-4865, sequence.
ACCESSION   KCLJ01002134
VERSION     KCLJ01002134.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 572)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 572)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..572
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="237966cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>572
                     /note="ultra-conserved element locus uce-4865"
BASE COUNT          176 a          103 c          103 g          190 t
ORIGIN      
        1 aattttccca gtgagaaatt tttttttggt tggattttat tgctagtgaa atatatgttg
       61 ttgtgtcatg tcataaacag aaaactgttt ttaaatcctc agcactgctg acacttccaa
      121 caagtacttc cgtattggtt ttggtcttat ctgtttctaa cagacagcct catgccttgg
      181 aaatctgacc tgaaagaaaa attcagcccc aagtatctgc tgtcaattgt gcagaaaata
      241 agagatgaca gcaaagtcac tcctgcatgc caaattagat ctctttccaa catcttctaa
      301 tgtcattatt agcactcaaa tacactgtgt caaaatgtgt ctgtataggg agatggacca
      361 ggcaacatca aatttatctc ctagtcaata tgacaagctg gttttgattc agacttctga
      421 ataggagaga ctcctgctcc atcattttgt ttacaaacat ggatattata atagatggaa
      481 tgtattatgc agtttaattg gatttctgga atcaatagtg taatagaagt taaaatcatc
      541 agtgtgagcc ttctccaaat agtcaatggt gc
//
LOCUS       KCLJ01002135             654 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 238073cal ultra-conserved element locus
            uce-5505, sequence.
ACCESSION   KCLJ01002135
VERSION     KCLJ01002135.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 654)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 654)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..654
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="238073cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>654
                     /note="ultra-conserved element locus uce-5505"
BASE COUNT          202 a          112 c          128 g          212 t
ORIGIN      
        1 tttttccttt gctgctgaac tttttaaaag aggtctctga ttgaagagag atggaagcca
       61 ggcctgccaa aggatggaaa tccataatat ggatgccagt gaacttatta tgaaccataa
      121 tgtccccaat gacaaaggaa tcaaagagag aagcaccgta cctagcagta cagtacaaca
      181 cgatgaactg actgaatgca gtattagatt tcataggagc agtctcacga ctaaagcgac
      241 gatgcatcgg ctgcttctta tcattgcatt ttccatctag atcagttaca gccatttgat
      301 tccttaattg ttttttcaag tcttccagat atttcttagg ttagctacga tgtaactttt
      361 tcagggaata gtttaagctt tattcattca tgcaatacta aagagaaaga aatactgcat
      421 ttttgtgctg gcttgaacaa tgatgaacaa taatgaagga caaatgaatc ctgaaggaag
      481 atttttttaa atgttttgtt tcttcttact aatggagatt tttttgtacc agctttacca
      541 gttttcagcc atttattaat gtgggaattt atcttactaa agcaatagtc gaagggaagg
      601 tgcatattat cacggatgca atttatgttg tgtgccagtc tggtccaaaa catc
//
LOCUS       KCLJ01002136             472 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 238182cal ultra-conserved element locus
            uce-5240, sequence.
ACCESSION   KCLJ01002136
VERSION     KCLJ01002136.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 472)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 472)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..472
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="238182cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>472
                     /note="ultra-conserved element locus uce-5240"
BASE COUNT          183 a           67 c           74 g          148 t
ORIGIN      
        1 agaagcagaa aaataaaaat aagtgcaaaa ccaaattacg atactacagt aaatatttaa
       61 ctatttctag attgtgaact taacatttta aacatctgtt agttacttat atgttgaaat
      121 atatgcaaaa atatttagcc aaattgaagt cttaggccca tgacaatcat ctcaacacag
      181 tgggtagttc tgaaaattaa tgagaatgat aatactgtaa agactgttcc agagtttgcc
      241 caaattcatt atctaagact cttgttaaga acatctcaaa gaattttaac caggaaaata
      301 tattaatggt tcaaaagcat ttttcaaaat ggtgatttat aaaagtataa tggaattata
      361 tatgcaagaa ctgtagttag aaacacaaat aacacaggag cagcacatta tgaaggagca
      421 ttttccaata gctcttgact ttgattttgt ccgtaggtgt caaggtttcc tt
//
LOCUS       KCLJ01002137             730 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 238287cal ultra-conserved element locus
            uce-4117, sequence.
ACCESSION   KCLJ01002137
VERSION     KCLJ01002137.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 730)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 730)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..730
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="238287cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>730
                     /note="ultra-conserved element locus uce-4117"
BASE COUNT          225 a          131 c          137 g          237 t
ORIGIN      
        1 aaattctgta cttagtatgt aggtttttat aaacataaaa tctgaaaagt ctttgtgctt
       61 aaactttttt tcctgttaaa cagaattagt tgcttacttc caatactgcc actgtaacgg
      121 atattacaac agatcacaat tttcacagac acatcaacat taaaacattt acctatgaga
      181 aaataagtca cttctcatta gttcacagtg cgaaaaagtg gtgtatactc tgtcttgaaa
      241 aaggctttca gttattcacc aagccagaaa agtcctgata ccagatgcag tgctagattt
      301 aaagaatgga aagcaacaca tcacatgttg ggaggaaaaa aaataaattt ctcgtttctt
      361 catggatatc gtctaagtga ccttcgtctt ctgttgtaga aatgcctgag cccatgttgc
      421 cgtgaaaaat tcatcatgta attttgtttg cgagtgctgt caaagggtga aagaagagaa
      481 gagtgtcttt tatatgtagt gtgaattctt ttcgcagtga gctagtggga ctgatttttc
      541 tttgtccttg tacgactttt caagtctgtg caaactgatg tgaagcacaa ggcaacggag
      601 aatctgtccc acttggcttt catttacagt aaatttaaga gctttcagct aatgaaaact
      661 ggtgctgcct agggccagat tcactaaaac atcacttcat aacggggttt tatactccag
      721 ttatcctttt
//
LOCUS       KCLJ01002138             580 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 238399cal ultra-conserved element locus
            uce-3815, sequence.
ACCESSION   KCLJ01002138
VERSION     KCLJ01002138.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 580)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 580)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..580
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="238399cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>580
                     /note="ultra-conserved element locus uce-3815"
BASE COUNT          182 a           99 c          159 g          140 t
ORIGIN      
        1 aaatacacag tgggaagaac aattccccag aaatcatggt gaagggagag gaaagctctg
       61 gtctgaagtt taaagcttcg gggggaagga aaaacaagaa atgataagtg gggggaagag
      121 gagggaaagc tgcctctcag ggcctgggat acggcacatc tctgaagctg ctgagaggga
      181 tgtagccatc tctgcaaatc aagatgagct ggctggccaa tgaagcatgc ccggcatttt
      241 atttctcata ttgtttggag atagggattc agctgagtgc attcagcaaa taaagatcaa
      301 ataacctgct gtgaataatg ttttaaacct gggttcctat caggatctag ttataagccc
      361 atatactctg ttggataaaa aataagttac acatggctgg aggcagtatt actttctaag
      421 gaagatgaaa tctgttttga aatagaaaat gtttagtgat tccccctcct cgaagggcta
      481 aaccacataa agctgcctga tggagagggt ggaggagggt ccaccaatat ttcacccagt
      541 gtgggtccag agctaaggat ttatgctaaa agagggggtg
//
LOCUS       KCLJ01002139             450 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 238508cal ultra-conserved element locus
            uce-6286, sequence.
ACCESSION   KCLJ01002139
VERSION     KCLJ01002139.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 450)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 450)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..450
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="238508cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>450
                     /note="ultra-conserved element locus uce-6286"
BASE COUNT          162 a           86 c           59 g          143 t
ORIGIN      
        1 ttttgattaa aacttgactc tctttgcagg ctgaagatca gtaaaagttc agcaacagat
       61 gctttgggta cacataagaa gtacctgcaa tcatttagca ttgcaaagag aattctgatg
      121 ctaatgaggg ctaaaaattg gattcacaag tttacagagt acaccaaact gaacaaaatt
      181 gtcagcataa catttaaatt acttttttga taagcttggc tatttacaaa tcatcagaca
      241 attacatctt ccaaaaacta tttaacatca attcactctg ccttttcaac actgcacttg
      301 attaattcca aataaattga aagaaattac cttgcagatt gcaagaaaaa aacaattgct
      361 acagttttaa attgcgtatc gttaaactaa ctccgcataa tagttttcat ttgcattatc
      421 ttctctgctc caaacattaa ccatttcaca
//
LOCUS       KCLJ01002140             608 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 238613cal ultra-conserved element locus
            uce-6790, sequence.
ACCESSION   KCLJ01002140
VERSION     KCLJ01002140.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 608)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 608)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..608
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="238613cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>608
                     /note="ultra-conserved element locus uce-6790"
BASE COUNT          179 a          109 c          117 g          203 t
ORIGIN      
        1 tttcatggct gcaatatcca tttttagtac attcgtggag agttcttcaa tctttaccac
       61 tagataatgt caaaacttca gtgtctgata cagaaaaatg gcaaactgca tttcactttg
      121 gatgttatac agcagatatg taaataaacg taaagagaag tcagcaatgt cacacttttt
      181 ctgtatcaac attttatatg agtgattgcc tcctttcctt acaggtagat cttgccaaga
      241 caggtgccaa gaacatgccc acagtgtttt tgctgacaga tgcccaagtt ccagatgaat
      301 gctttcttgt gctgattaat gacttgttgg tatcaggtga ttaaaccaac aaatttcttg
      361 aaagatcttt tccaatgaca aatgatctgt gttttcattt aactttaaag agattatttc
      421 tctttcaggt attgtagggg gagattttag agaggccatg tcaagccatc cagcctgaga
      481 ttgctaaggt ttaaaatgag aatgttcctt tgacttaatg tcatttgcta tgatgtgtca
      541 ctaacttcaa gcaatgttgc catgacttag catggagcaa tgaagcttca cccatgttag
      601 agaatctg
//
LOCUS       KCLJ01002141             381 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 238718cal ultra-conserved element locus
            uce-1466, sequence.
ACCESSION   KCLJ01002141
VERSION     KCLJ01002141.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 381)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 381)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..381
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="238718cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>381
                     /note="ultra-conserved element locus uce-1466"
BASE COUNT          117 a           58 c           77 g          129 t
ORIGIN      
        1 agtttgggtt actcttaaat taacaccttt tatatttaag tttccaaaca gcaaagagta
       61 taaattgtgt tctgcatcta attattggta acaagttgga aaattgtatg aaagagacag
      121 caagggaccc actttctaga tttgcctttg ctcatgttat ctaccaaaat tgttaattca
      181 attatgaaac gtggggaaaa gtgcagttga cttatttaga tgtaaaatag gtgcatgttc
      241 agaaggcagt tgcagaaatc cattctactc attctctgtg tcaggatctt tgctttgttt
      301 cattgcagta aactgtgatc ctaaagtcca tcaatatgac cgaaagaagt tttggagttg
      361 agaaggattc cttgagtgct g
//
LOCUS       KCLJ01002142             392 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 238821cal ultra-conserved element locus
            uce-7516, sequence.
ACCESSION   KCLJ01002142
VERSION     KCLJ01002142.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 392)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 392)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..392
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="238821cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>392
                     /note="ultra-conserved element locus uce-7516"
BASE COUNT          111 a           66 c           80 g          135 t
ORIGIN      
        1 atttggtcat cataatcaag ggctattaca gcaatagatc ttatctttag aatgggagtc
       61 cccttgcacc ttcagttcag atttttgttt atgcttggct gcaattgtgg ctgtttctga
      121 tagttttagg tcagccatga cagactatgg gtgacactaa ataaacaagc tgggagtctg
      181 tgactaagaa ggaatgatac tggttctcag agtttgattt tctctggtta atcaacaatt
      241 tgttcagaat aactcattgt gaaaagtagc tgtttgctag actacacata tatcccctca
      301 caactcatag gcaagcagaa ggaacaaatc atgctcagtc ttggttttta tggtaggcta
      361 cagaatttag ttgtttattt aatttatgtt ca
//
LOCUS       KCLJ01002143             688 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 238932cal ultra-conserved element locus
            uce-3689, sequence.
ACCESSION   KCLJ01002143
VERSION     KCLJ01002143.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 688)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 688)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..688
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="238932cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>688
                     /note="ultra-conserved element locus uce-3689"
BASE COUNT          204 a          132 c          129 g          223 t
ORIGIN      
        1 ttctttgcaa actttaattt aataactcct aatatcttca gtcgctttca cacacagtgt
       61 gcttactgaa ctaatgcctt atatttcttt ctgaatagaa accactcctg cccagacctt
      121 gtgcagctga gtgcagtaga caatttcaaa gactgctctt tctatttaac aatcagtgca
      181 ttaggctaaa atattcacac agatgcacta gcaattgaaa gggtgtacgg tgtagtgaca
      241 aggtccttct gttacctgga ctgtagaatg atgaatgagc attagtggaa tattcttttg
      301 gcctttaggt ttaccttgat cttctcacag aatgcaaatt gacactatac ccacatttct
      361 atagtattta ttactgtggt catgatgtga gggcttttct caatatgaat agtgtaaaag
      421 gggaaacata ttactgcaaa gaggcattat tgtgctggga atgtataaac agctgagaag
      481 aatagagcga catgctcata atggaaactg aaagctcttc attttgtcct gattgtctac
      541 ccttcctttt taaacaacct ccctttttcc tagctatcaa tacaaagttc tttttggtaa
      601 aatgaagtgc attcatgctg cctgaaagaa gcttttaaag ttgatctgtg cccacacaaa
      661 agggaggcag tgtttgagca catcaagt
//
LOCUS       KCLJ01002144             602 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 239038cal ultra-conserved element locus
            uce-4855, sequence.
ACCESSION   KCLJ01002144
VERSION     KCLJ01002144.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 602)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 602)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..602
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="239038cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>602
                     /note="ultra-conserved element locus uce-4855"
BASE COUNT          194 a           97 c          130 g          181 t
ORIGIN      
        1 aacatgaatt catagaggca tttttaacct gattctttac cctctccctc cgtcacctct
       61 tgaaaagttt ttcagactgg agctgtactt gaatttagtc taattggaag gaaatgtgag
      121 acccaaatca ttggcatgga gacacttgca tacaatcacg gtatgcaaaa cagcagaagt
      181 ctgaattcat aattggacgt tccaaaatgt aattatgaaa gatgaaatgc tcctttcaat
      241 gagaaggctg taaatagaat aattaatttt gtgtttgctt gaacaattct gtattatgga
      301 ccttacactg gaactgaaat taattaagtg caccaggatt tatggaggag gtgaagagag
      361 agggaaaaaa aagaattaat ctgaagtaaa agatagatga ctttgtgagt gtaatgatgc
      421 gttagtctgg ggtattcttt aacaaattta gcaggcatgt tctgggtaca aacagcactc
      481 actgacagaa ttatctcaac taatgcagct gctggactct gagcaaattg agattgcaga
      541 tgagtacttt agatttagag ctattaaccc tctgtgtgct ggagatgtgt ttccattccc
      601 gg
//
LOCUS       KCLJ01002145             347 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 239150cal ultra-conserved element locus
            uce-1621, sequence.
ACCESSION   KCLJ01002145
VERSION     KCLJ01002145.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 347)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 347)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..347
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="239150cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>347
                     /note="ultra-conserved element locus uce-1621"
BASE COUNT          109 a           61 c           84 g           93 t
ORIGIN      
        1 aatatattcc gatttttttt cttgtcatta agccagtgcc tcggagatga tgatgtagtc
       61 cctatgtggg ccgcagaaag cacttcgagc cgtgctggag tcgtgctggg tggctctgat
      121 agcagagcta atgggagcga atgggatgca acgaactgtt gtaatgacac cagccaggga
      181 agagacaaca gtaagaataa ataaatgtta actattttcc tcttccagac atttgcatct
      241 attgccatta agttcattta aataagagag agagcgagaa agaaggggaa acttactact
      301 actcttaata accagtgtct aaaaataaat taggatgctg ggatgca
//
LOCUS       KCLJ01002146             345 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 239252cal ultra-conserved element locus
            uce-7461, sequence.
ACCESSION   KCLJ01002146
VERSION     KCLJ01002146.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 345)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 345)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..345
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="239252cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>345
                     /note="ultra-conserved element locus uce-7461"
BASE COUNT           60 a           89 c           87 g          109 t
ORIGIN      
        1 ccaaggtgag ggcgccgcag gatgcggcag cccccgggag gaaacccggg aaccgagatt
       61 ggcccgctaa gatcagaaag gctggcgagc acagtgccct attgtggagc tgtcacactt
      121 ccctttactt tattgctttt gtccaacacc ccattgttcc acttcctttt gtcccctatt
      181 cacagccctg gcttttcatt acccagccgg ccttgttgtt ttcatttctt ttgtttgaag
      241 ttcctgagag gaaggtttta ttttcagccg tttgattaat tcgcagcttg agctttgttt
      301 gttatgtaat tgctggcttt gcacccccag ggtgctgggt ttggg
//
LOCUS       KCLJ01002147             572 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 239359cal ultra-conserved element locus
            uce-5111, sequence.
ACCESSION   KCLJ01002147
VERSION     KCLJ01002147.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 572)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 572)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..572
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="239359cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>572
                     /note="ultra-conserved element locus uce-5111"
BASE COUNT          130 a          146 c          199 g           97 t
ORIGIN      
        1 aaaagggagg cgacagcaag cctagccctg aagaagggaa aaaacaaatg actaaatatg
       61 ggagatgcat ggaaaggact cggtttggag aagcaaagga gggacaacct gcaggcaagc
      121 agcccgggag acatccggga ggcagggaac cagcatccag gaacaggctt ggagaaggag
      181 ccggcaggga tctgcccaag ctctgctcac tgccgttggg gaccgtgggg tcctcgcact
      241 cactgggttg ttttctggat ttcgaggagc ccttggatga ctttttgggc ttctttatcc
      301 gctggtattt cagagcttcg agcctctcag gtgcagcagc gtccccgggc ggagatggac
      361 gttttctagg aaggaaaacg cgccatcagc ggctcccggc cacgctctct gggcgtcccc
      421 ggtggggggg ccgatcccag ctggctctgc cgtggaaaag gaagaggtga gaaacccagg
      481 gctgagggag cagggccagc caggtgtgcc agagcacggg atggaggaag tgaggcatcc
      541 ccgctgtgcc cctcctccag gttctcgagc gg
//
LOCUS       KCLJ01002148             558 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 239471cal ultra-conserved element locus
            uce-6756, sequence.
ACCESSION   KCLJ01002148
VERSION     KCLJ01002148.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 558)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 558)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..558
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="239471cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>558
                     /note="ultra-conserved element locus uce-6756"
BASE COUNT          202 a           97 c           96 g          163 t
ORIGIN      
        1 gataattaaa agtgtctaac tcaataaaaa tctaaacttt cgtggataaa ataggaatga
       61 tcatccatag tcttcaaata caatctgttt gcaattacca aaatgaaata atatatatta
      121 gatttttatg gctttttttt gcgcttccca ggaagttctt ttttctctaa gttactaaaa
      181 gcctgaggtc tattagtaac tccccccact ttcaagctaa ttaaagtagt agaagcttgg
      241 aggtttaatt ccccagagcc gaagctcagt gtgagaaagg taatttgtct gtccagaaca
      301 aagattaggg agcagccagc aagcatattt aataaatgag catcaaatat cttctactat
      361 ggacacagac aacaccaatt atgtaactac aattgctgag tgatatgtaa accagaagat
      421 ttttaagatc ttctctaaga gacgtaatgt aactcataca gaagctgaag acaaacattt
      481 gttacaaaca ctgccaacgt gggaaatgta gtaggtggta atactgttgc aaacaagaaa
      541 tactacagga atactacc
//
LOCUS       KCLJ01002149             754 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 239580cal ultra-conserved element locus
            uce-7701, sequence.
ACCESSION   KCLJ01002149
VERSION     KCLJ01002149.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 754)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 754)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..754
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="239580cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>754
                     /note="ultra-conserved element locus uce-7701"
BASE COUNT          262 a          133 c          147 g          212 t
ORIGIN      
        1 aggcaaagat cacaatgagt aaatgaagcc tctagaagac tgctgaggtg ttcaacacct
       61 gggtcaggaa actggaggga gatcagtgtc aggtacaggt aaatgagaaa gcagaaaagg
      121 agaactgtga gcagtaagcc aagaaaccta caatgcattt cttacaaaga gctgtaaaat
      181 tcacatttat tttgtaagta tgagatagat gggttatttc tacatataga ggtgcccaag
      241 taaaatcaag ataagtgata ttaatgtcct atggtcagta ttattgaacc tcgaaagcaa
      301 taaagtatga gtcgataaat attacatttg caacatagtt aacattcttc tactgtctct
      361 ggcacatatt acacattgta accgcaagtc tacaatacat tattcatatt tggggtgtca
      421 ctgagtgatg gattgctgta agagaggctg tcctttaaat aaatcaacaa ataaaaatgc
      481 aaatgttaac attttcagcc acaacttttt ccatcttgaa tggggaatga aaatttcaca
      541 ttatatcgac agccagcaga gagaacaatt aacaacctac actgtgaata agagagatta
      601 atttgccaat gtctggtttt atcacttgca tatggaacta catttgcact gctggctttc
      661 tcagggagta ggcaaaactt gtgtctccta ccactttcgg actcaccacc cactccaaac
      721 atattttgtt cctaagtaaa atctggaatg aaag
//
LOCUS       KCLJ01002150             681 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 239692cal ultra-conserved element locus
            uce-2287, sequence.
ACCESSION   KCLJ01002150
VERSION     KCLJ01002150.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 681)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 681)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..681
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="239692cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>681
                     /note="ultra-conserved element locus uce-2287"
BASE COUNT          171 a          178 c          129 g          203 t
ORIGIN      
        1 atctcctttt atagcacaat cctcttagca cttatctctc ccttcctcat taatccagtt
       61 tcaccctgac acatgcagag acggggaggc agatacacac accttctctt cttcttgacc
      121 tttctgattt ggttcagcat ttatactagc ccacctgtct ggccaatctc ccctgcaacg
      181 tgcccttaaa aacatcgcct gataaggcac ggtgacaaac ctcacagaga gcaagtgtgc
      241 agcaaaaggg agagaaagca ctgagggaaa tcttctaacc aggatctgct gctgcacagc
      301 taatcaggca ggtattcagt tgttcactcc tgcagacttg cttagcatag aaataggctg
      361 tctgcccagg aagatgaggt aatgtctagg tttaatgcca atctctgtaa ctggcaggac
      421 acatcgggta aatatttctg ctgcaggaga tcacattaat ttgattttgc taccaatttt
      481 cattattgtt attatttcta ttgatatgaa tatgcatgag tttacctgcc gacgctgagg
      541 gctccaggtg aggcagcctt catgctgcag cactcacact cctccctctc ctttcatctt
      601 ctttatgaag gaccaggcat ttgtctgctc aattatctcc tctagtccat ttatgtagta
      661 ctagatcccc ttctccactc a
//
LOCUS       KCLJ01002151             503 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 239801cal ultra-conserved element locus
            uce-1770, sequence.
ACCESSION   KCLJ01002151
VERSION     KCLJ01002151.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 503)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 503)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..503
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="239801cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>503
                     /note="ultra-conserved element locus uce-1770"
BASE COUNT          158 a          106 c           69 g          170 t
ORIGIN      
        1 ttgtgtttga aacattaaga aaggcaagat cttacctaaa gaagtttaac tgaagcttag
       61 aactattttg ctctacaccc tcagccttcg ttgccatcct tataaacaat ctaccgtaaa
      121 gctttgcaga gatacagcac agctttttaa gactggctga acttttagtg acgttttcaa
      181 gagttctctt gtactagacc tgcgtccctg gaagagtacc ttgctttttt cctttccttg
      241 ccattgaaga agcagcatct aaaaaatcta aaaaggtctt gcagagatac cccttaagtt
      301 acctagatat tttaaacctg gtaatttaca gacaacatac tttttctcac cagcatttta
      361 cacgtacaac aatagctttg tattatttgt gggaccttat actacccact ccttgcctca
      421 ttttacagta ttaaaaaatc taaaattaca caatatttcc tttagaatta ttttattaaa
      481 atcataaatg tacaacagct tct
//
LOCUS       KCLJ01002152             598 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 239908cal ultra-conserved element locus
            uce-4434, sequence.
ACCESSION   KCLJ01002152
VERSION     KCLJ01002152.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 598)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 598)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..598
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="239908cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>598
                     /note="ultra-conserved element locus uce-4434"
BASE COUNT          197 a           94 c          114 g          193 t
ORIGIN      
        1 acagagaaat tgatttgaat gaaaacagta caggagcttt tcagggtctt ctttctaaat
       61 ttattcaagt attaaacaaa cagaaactac agcatgcatc agatactttc ctttattgta
      121 caacaaaact gtggacttgt ttgtatttgc agcatttcca gcaacatcag gcagacttgt
      181 cgatgttatc cagttttgca cagtcactag agtgtcgcat catgaattat taaatcagtg
      241 cttcgtggta atacataatt tcttatcaat tattcatgct aatgtgcgtg tagtttactt
      301 aattgtgtta ttgacgatca aaagtaattt cctgaaaatc ctcaaggaca gaaaatttaa
      361 tcagcgtaac tacttttcag atgcaatgct gttaagtatt cttaatttgc tcaacaattc
      421 acttatttat gtacctttct ggaggaaata cgagtttaat caaacaatta gattgaagag
      481 ttagtgtaca gaagggctga agttcaactg aatgcaaggt aattatgttg aaacaaagtt
      541 gggcctgcct ctttggactg gaaaggaggg agtgggaata tcactaagaa aacagtga
//
LOCUS       KCLJ01002153             698 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 240018cal ultra-conserved element locus
            uce-1625, sequence.
ACCESSION   KCLJ01002153
VERSION     KCLJ01002153.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 698)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 698)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..698
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="240018cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>698
                     /note="ultra-conserved element locus uce-1625"
BASE COUNT          189 a          162 c          149 g          198 t
ORIGIN      
        1 caatcccctt ccctgtgctc atttccatag gagtgagatg ctgactttgc aagccattcg
       61 ctttatgaat atgaccctca aagggaagaa accctctcac aagcccagaa ctatgttatc
      121 atcgttatta aggagcttaa aaaggagctg ggaagaggag acaccggtgg aattgcagcc
      181 tgattgtgat tgatgtgttc ctattagctc ctcactgtta tctctctgga tggcaagaac
      241 agccagtggc ttgtaacaca acagattacc tgagttttca gccctagacg gatgtttaaa
      301 taaaatatag tcccttttag cgagaagctc attttctctc cgaggctccc agactatttc
      361 atgtcagctg tgattcgctg tgactctcct cagtaaacat gtcttatcat taataattct
      421 ttacaagcac aatttcatgg agtctttttg tatgcgtgcg tggggggagg agggggcgtg
      481 catgcgcaaa tgttggcctc agcctcatct cgatacagtt tgggtaccca aggtgcttct
      541 cttcagaatt tcacctgcct tgccaaaaat gattgattac ccctagcaga ctgggtgtcc
      601 agctataccc aacaaatgac tttggcccct aacaacaggc cttggccaga tagaaatcaa
      661 tatttcacca ttaaaatcta tcaaagaaga gttaaggc
//
LOCUS       KCLJ01002154             345 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 240128cal ultra-conserved element locus
            uce-1733, sequence.
ACCESSION   KCLJ01002154
VERSION     KCLJ01002154.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 345)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 345)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..345
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="240128cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>345
                     /note="ultra-conserved element locus uce-1733"
BASE COUNT          124 a           71 c           46 g          104 t
ORIGIN      
        1 aaataatata taaatatata catactgcaa atgtaataca gataacaaat tcatttaagc
       61 ccatttatgc acattagtga cacaccatgt ggcagaaaga ctaggactac aagaagaccc
      121 cgtggcgatt tattttatat taaatcccta atggcctctt ctcatcttta caaaaatatg
      181 cacaaaagtc cagactatgc agccattgaa atgaatggtt atttatttgc taaacgagaa
      241 ccctatgttt aatgttcctt agacataagg tagtctgcaa aagtcgcatt cctacagctc
      301 tatacatcat ttattttaca taccctaact tctcacaaca ggcat
//
LOCUS       KCLJ01002155             595 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 240232cal ultra-conserved element locus
            uce-833, sequence.
ACCESSION   KCLJ01002155
VERSION     KCLJ01002155.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 595)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 595)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..595
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="240232cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>595
                     /note="ultra-conserved element locus uce-833"
BASE COUNT          201 a           92 c          124 g          178 t
ORIGIN      
        1 tttccattag ctttagtgaa tttataccca ttatagaaag gttgtagcta aataaatatt
       61 attttagttt aattggatta aaaattagaa atgcaaattc tggtgcacca tggctctgag
      121 tccttgtctc cctttttatg gtaataccct tctaatggtt taagcctatg aagaaaaaac
      181 actgaagatt ttaactagca gctttgcagg ggggcagaaa ggagcaaaga agatttagtg
      241 gtgaaaagag caaataaata ggtgctccaa gattaaaaag agggtagaag tgcatgctga
      301 gctgttgaaa gacctctctg tgtttaaaga aaaatattgt ttggttcttt caccagtgca
      361 tgatcaaaat aagaggtaca aattagttca tggctgctga agctacaaaa catcatgcag
      421 agagctgtct ttgggaacgt tttaatgagg agaagaggtc atcagactgt gacattgctt
      481 ttcagaattc ttcaagaaca acacagactt cctgttccaa atgtggtaaa gaataaaaca
      541 accttagtag taatcgtaca acttttgaac cgtgttcctt ggaaatactg taccg
//
LOCUS       KCLJ01002156             654 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 240440cal ultra-conserved element locus
            uce-1054, sequence.
ACCESSION   KCLJ01002156
VERSION     KCLJ01002156.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 654)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 654)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..654
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="240440cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>654
                     /note="ultra-conserved element locus uce-1054"
BASE COUNT          189 a          134 c          138 g          193 t
ORIGIN      
        1 ttttttgtct tttgccacat ttattagaag gtggaatctg ttttgttctg aaaaaagcta
       61 tgccaagatc aagcccttac ctgaacctct gtcttcaacc agctggagca atttggggtt
      121 gatggcttga ttagcctccc gaagcacaga gatgaggtca tttacttgct taatattgtt
      181 aggagtaaag aatgtgtatg ctgtgcctgt tttggtactg cgggcagttc gtccaattcg
      241 gtggatatag tcctctgagg agttagggta gtcataattg atgacaaatt tcacatcttc
      301 cacatctgta aagtgttgca gtgtggcaaa aagcgaggta caaagttttg cacaccacaa
      361 cagccaaatc gaagataaac attagacaag agtattttaa agggaataat ggctgcaaag
      421 aacagtgtta gaatcatcca tttctgcagc atagtggaag agaaatttta cgcattctca
      481 tcacccaccc tgtgatccaa aaccttacca tgtgtgcatt tgcttggtat tcccaactca
      541 agtgtcccct ttacaaatca tcaagtgaca tctttgcagt agggccacta aagctcacag
      601 cagcctcttc atgtgctcat ttgaggacct tagagtaaaa acatacaagg tcct
//
LOCUS       KCLJ01002157             640 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 240551cal ultra-conserved element locus
            uce-5416, sequence.
ACCESSION   KCLJ01002157
VERSION     KCLJ01002157.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 640)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 640)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..640
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="240551cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>640
                     /note="ultra-conserved element locus uce-5416"
BASE COUNT          199 a          110 c          126 g          205 t
ORIGIN      
        1 agaattcctg ctgcaagaga aactgctaaa gtatatcaac attttcttca ctctttaaaa
       61 catgaatatt taaacagaag acatttttcc ccatgcagaa gcctaaatag aagctcttat
      121 cttcaatagt aaaagctgtt attttttttt tcaagaggtt ttagactgta tagagatagt
      181 tacatacaca ggcatctcaa atgagagggc accatacata catgtaattg gttgcctttt
      241 ctttttcctc ggcagtctgt acaaaacgtg aaaatgtgcc tgcttctgac tagccattaa
      301 aaggcagtgg ttgcaccata ctgtgatttg gggagctgaa gaaaatagcc agaactgact
      361 gatatctgat aaacagtaac aggagtcagt ttattgcacc aatcgttaaa taatggtgct
      421 gattataagg ctgctaactg cagatgctgt aattgtctgt cataaatctt agtcatttgt
      481 gacaggagca caatgaaaga gagcatctgc ttgagggcaa atgacttctg ataaatatca
      541 gctctgctaa aatgtacttg gatgtgtctc aatattttgg agagccattc atgttgcttc
      601 cacaaatgtg aagttattat tggtttgtat tgattttgcc
//
LOCUS       KCLJ01002158             664 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 240661cal ultra-conserved element locus
            uce-3854, sequence.
ACCESSION   KCLJ01002158
VERSION     KCLJ01002158.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 664)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 664)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..664
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="240661cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>664
                     /note="ultra-conserved element locus uce-3854"
BASE COUNT          229 a          100 c          126 g          209 t
ORIGIN      
        1 tcagttgtat tcccggcaag gaagatagta ttgaattagc attggagctg aacttcagca
       61 tagattgtta taggaataaa atatgaagta aaatatgtga cagaattaaa tccatcagtt
      121 ctaataaaag aaacagaaga aagcaaagaa atattggacc cttaaatccc attaaccagg
      181 ccagagagag aatgcgttaa aaggaagctg cactgtatct tttttcattg tttgatgaaa
      241 taatcttttt caccctttaa gtagtgtgtt taaaactcct agtatttctg aaacaaaggg
      301 aatatacagc caccgagttt ttataccttc ctttctgagt attgtccttc agtgcaatac
      361 agagccattt ctttgttctc acaagctagc agttaaattg tatgtaaatg tatgcaaatt
      421 agatgctgtc taataaagag agtcattaga tggaagaaat atttagttta gagggaaaaa
      481 agagaagaaa gcaggtgtat tttgcaatag aaaaatgtaa gattgcaaaa gcccctcaaa
      541 ctttgggtga aggcttttta taaagccatt aaaatatttt gccctactct ttttctgtgt
      601 gtatgtacat gcacttctgt actggctgtg ctatgcatac agacatgtaa gtattgtact
      661 cata
//
LOCUS       KCLJ01002159             770 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 240772cal ultra-conserved element locus
            uce-6844, sequence.
ACCESSION   KCLJ01002159
VERSION     KCLJ01002159.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 770)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 770)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..770
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="240772cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>770
                     /note="ultra-conserved element locus uce-6844"
BASE COUNT          261 a          115 c          172 g          222 t
ORIGIN      
        1 aaaaaatccc ctttcttgga gttccatcat tttggaattg acaaacaagt taaaaaggct
       61 gccaaaagaa agcaggagtt ggaggaagtt aattcacatt gatgtgtgca tgccactgat
      121 agcaagttat gcctatgaca ttctgacatt gccgctcaaa aaagagaaag agtggagtgg
      181 agtgaaagac taagaggatg ttcatttaat tggaaagcct actgagatct gagacagctg
      241 aggcaaagga tgcacccttt ttctgcacaa tggcattggc tgaaggttgt atataaggtg
      301 gccttattaa agtgacaagg caatttaatt cttttgtgca caatgattct acttcattga
      361 tttacaatgg gaaggatata attttgctag tgttggcaaa aagctcaaat gtcaggcttt
      421 tcaaattgcc atacttgcct tgttcaggat gaataatgaa taagtcacct tttgtctaca
      481 gttaaatatt cttgaataaa tacaaagaac ataaaagaca taaatgattg cctgatttat
      541 atttaaaata aagatcaaca ttgtgataaa tggttgaaaa tgcttagtgt gaagtaatat
      601 gactatgctg ataattacat tatcaattaa ggggcagccc aggtgtggag tgttatagaa
      661 tggatgccag agagaaaccc ccagtgtgga acatgccaaa cttgtctatc tggaaactag
      721 ggagtgaaga gacccttagc tgtgcagggg atcacatgtt ttaaattgga
//
LOCUS       KCLJ01002160             630 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 240979cal ultra-conserved element locus
            uce-2504, sequence.
ACCESSION   KCLJ01002160
VERSION     KCLJ01002160.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 630)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 630)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..630
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="240979cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>630
                     /note="ultra-conserved element locus uce-2504"
BASE COUNT          238 a          117 c           98 g          177 t
ORIGIN      
        1 gaggacaaac tattactttt tctgcaagat gcttcctccc atacattaag tgaaaaactt
       61 atgcagcatt ttaaaaacat acaacagcgt taagaagaaa aaataatcac aatctagact
      121 ctgcagctgc ccctttgact tatcaatttc agtaagcaca atttcaatca agtctagata
      181 aaatatacta atcctaaata gaccaagttt gtcacctacc acttcctata agctgcttac
      241 tatcctggag agagagaaga aatgctaaat taaatgccaa acagtagcag acagcacttg
      301 tttggctgat taacttgtag acaagcatta caaataaatc tgagcatggt ctgcagcaaa
      361 ttaaattcca gtgcttttaa gaacaaagaa ttccttcgga aagaggatta gcaactttac
      421 acccaggaat gccagtttaa tttaattgtt ccacaatccg atatttaata tgcaaatatc
      481 attttgatat ataagagcaa atttgaaaaa gtgaggaaac aaacaagacg actgtctctc
      541 ttctgaactg taattataca aaataaagcc ggccgaatta ctgggattgc attctattaa
      601 tgtgaatcag aacaagacta attaaaggtt
//
LOCUS       KCLJ01002161             605 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 241090cal ultra-conserved element locus
            uce-4077, sequence.
ACCESSION   KCLJ01002161
VERSION     KCLJ01002161.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 605)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 605)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..605
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="241090cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>605
                     /note="ultra-conserved element locus uce-4077"
BASE COUNT          159 a          145 c          141 g          160 t
ORIGIN      
        1 ctcagctcct ccaccgcagg tccacaggcc tccctgcgtc agtggctgcc cccactggca
       61 gggaatgagg tggtttctcc ccagctgagg tggcttctcc gcttcccaaa agggtgtagc
      121 gagaaacaag ttaattttgc tctcaaaagc tttggtggct cattacagaa atggtaaaaa
      181 tattgctaaa aatgttttgc aggggttgcc acagaaactt gtagagcata taatccaaaa
      241 taggatgtct agacaaactc ctactgtctg accttttatg tatttcctaa tccagccaat
      301 cttgccaagc aaattggtga ctaagcagca attcccttta catggtgtcg taaaggcctg
      361 acaaggccca ggtcacggtt ataaatttca gtctggctac ttcagcaact ctgggcttcc
      421 tttaccagca cggctcccgt gtggtttctg ggctatgatg tgtgctctgg atcatcgtga
      481 agtaattttg aggctgtaaa atccaaaagc cacagctccg ctgtgaaaca gaaagcactt
      541 tcatcctgca ggaccctgga gtttacataa aattgtaaaa tagggagcct ggagagagtc
      601 tcagg
//
LOCUS       KCLJ01002162             665 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 241198cal ultra-conserved element locus
            uce-190, sequence.
ACCESSION   KCLJ01002162
VERSION     KCLJ01002162.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 665)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 665)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..665
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="241198cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>665
                     /note="ultra-conserved element locus uce-190"
BASE COUNT          213 a          135 c          126 g          191 t
ORIGIN      
        1 acacacactg tcctcaactt cttgatcctt cctatgtgca gaaatacaac aaagggacag
       61 aacttgttat caaaacaact gcaaaatagt ataccacctg tgaggggcaa gaatttctgg
      121 attttgtgcc ttgaacctgt ggaagtcagt acatttttgc cacttagaat cctctgtgtt
      181 atttgtaact gtcagtggaa cggaaatctg taattgttaa gagggaaaga gcctgtgcaa
      241 attcttcccg gtgcaaagtg aacagtcaat cacttttata aggacaggaa caaccgaaac
      301 tatccattcg tatactttcc tttagtcaac aatattacct ttagtaatct ggggaatgtg
      361 catccataaa ttacagaaag tgttattgca ttgctgaata aacagcaaca tttccatcag
      421 cagcagtggc agcaccacaa aggtataaca aacagactca atcattttct tgtcaagctt
      481 tgcaatgact gcagagttta ctgctggaga taatgttgct ttcctcagca ttgtgtgcca
      541 aactgcaaac tgcttattaa aacaaaacct ctttttctga gcagcatgag ttggataatc
      601 acttattgca ctcaagaaaa aacaggtttg atgcccagag gtggttagca atcaagcata
      661 tgcat
//
LOCUS       KCLJ01002163             380 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 241407cal ultra-conserved element locus
            uce-2076, sequence.
ACCESSION   KCLJ01002163
VERSION     KCLJ01002163.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 380)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 380)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..380
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="241407cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>380
                     /note="ultra-conserved element locus uce-2076"
BASE COUNT          130 a           60 c           68 g          122 t
ORIGIN      
        1 agacttagaa gagttttcag gagacagtgt tgtggctgcc tcttctgcaa ctcttcattt
       61 gtcctttaca aggttctgtg atttaagaat gtgtgttaaa tcttctgcaa caatcaattc
      121 aaatatacaa gtttggctat tcaaattact tttccaaaag tactttaaaa tgcattaagt
      181 tattaattgc ctgctggcac tttaatcaaa cgggaaaatt gacatagcca gaggcatgta
      241 tttttgtgga aaggaaattt atttaagaag aaacagcggc tcttactgct taatttaaac
      301 tgagaaaact gtggaaaatc aactgctatg gaaaattaat aaaacatttc cagctgcaaa
      361 cagtgactaa ttgtacaaga
//
LOCUS       KCLJ01002164             516 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 241510cal ultra-conserved element locus
            uce-243, sequence.
ACCESSION   KCLJ01002164
VERSION     KCLJ01002164.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 516)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 516)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..516
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="241510cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>516
                     /note="ultra-conserved element locus uce-243"
BASE COUNT          156 a           93 c          109 g          158 t
ORIGIN      
        1 tcctcagcag cttttgtcag gagcagctag ggatcatcca tctgtcatta aagtgttaat
       61 tcgattcatt aacatagaaa atattcaaca tttcccactt tggaggagat gggctgtgcc
      121 gtccttttaa tagaactctg ctggaaatca aacacaattt ttattcaggg gaatgattac
      181 tgtgtcttgt ttaattcttg cctaacaaat gtcagcacta atgtattaca gattattcag
      241 tcaatttgat ggttccaggt gaaagaaagg aacacaaatc tcttctttta gtgtaaaaag
      301 ggtcagctgg atgacttcca ctgcaggagc cgagatgagg cttgacatga atcaatcaag
      361 caggctcaat tttacagtta tagtgcctaa tgcctaaaca tgagcgtatg ggtggaaatt
      421 agcacccgat tatgagcata catgatcttc ccttggaaga caataatatt ggcattaagc
      481 ttctcaagag ggaagatgct gctggttttt aatatg
//
LOCUS       KCLJ01002165             626 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 241618cal ultra-conserved element locus
            uce-3466, sequence.
ACCESSION   KCLJ01002165
VERSION     KCLJ01002165.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 626)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 626)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..626
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="241618cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>626
                     /note="ultra-conserved element locus uce-3466"
BASE COUNT          191 a          112 c          111 g          212 t
ORIGIN      
        1 aggaggtttc agttttaatg actgcaagat caaatatttg acaaaagcaa agaccggaca
       61 tatatattct aaagtgaaag agggaggaga ataatgagtt ggaaaacaca gactggtttg
      121 tggaaaagaa tgctacaaag gtctctgtgt gaatcttcgg ttcctggagt ttatgccaat
      181 tccttttatt actatttcaa gtaaccaggt acatatggca tgtttgtaag taaagcagtc
      241 aatgaagtta gttacacctc tgcatttatt accctacccc tgagtattat taacttttac
      301 attccccata aaatataatt tatcacttaa ataatttgct ttgtgtcagg gttcagtgtg
      361 ctccagtgct ttcctgctca ttaaatgaga tatttttact taatgagccc agaatgtcct
      421 ttgcatgtaa cattagaatt gatttcacgc actccatttt tctaacatat ttgtatgtaa
      481 tttcagaatg tggacttcat tccccactct gaagaaaact acaaagaata atgacccatg
      541 aattctggag acctattatc tgcctgcact ttgcattctt tcatctagtt tgaaagtctg
      601 agttactatt tgagcctgat gctgca
//
LOCUS       KCLJ01002166             645 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 241726cal ultra-conserved element locus
            uce-7236, sequence.
ACCESSION   KCLJ01002166
VERSION     KCLJ01002166.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 645)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 645)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..645
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="241726cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>645
                     /note="ultra-conserved element locus uce-7236"
BASE COUNT          226 a          140 c          106 g          173 t
ORIGIN      
        1 aacagcaaga tgaaaagaca gtgataccac tgcaactaga ctgactgagg tgaaccaaga
       61 taataaattt caaatgcaag aaggaaaggc ccctgtactg ataaaggcaa cactgtcaca
      121 ctcttctatc tctcgataca tacagcaatg cagcaggcac ttcagataca tcagagctct
      181 ccaagattct tttccagtac atttacttct gccaagccct ccccttctcc caatacacaa
      241 aaatccatta ctaaagggtc taatctcagc tatcagcaga gagtgccttt tatggagcca
      301 ttaaaccatt tctcttgttt acagtgcctg aagaaagatg tgaattatgt ctgtgacaaa
      361 acaggcgata acatttctaa actgctatca aaatgcaaac tgaaatacac ttaaggacag
      421 ggaccctaat tcatgttttt gccattttcc tcgtaactta acagcactca cctgatgatt
      481 caaacaaatt atttatgcta taagtacaac aggtaggcaa aaaaaaatct gcttttaaac
      541 agtttattga acagttcgtc aaagagcata aaatgctagt tatgtcttag gtgatagtag
      601 gctgctctta tcagaaaaaa tccaaggttc acaagtccta aaatg
//
LOCUS       KCLJ01002167             473 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 241837cal ultra-conserved element locus
            uce-589, sequence.
ACCESSION   KCLJ01002167
VERSION     KCLJ01002167.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 473)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 473)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..473
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="241837cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>473
                     /note="ultra-conserved element locus uce-589"
BASE COUNT          142 a           93 c           82 g          156 t
ORIGIN      
        1 ttatgttgca gcaattacac tgtaaaagtg ctgcacaaga ttgattgctc tgatctgtag
       61 ttcaattgta aattagaata cacatccccc tggggacaca cggcccctat ttgtgattaa
      121 gaaaaaagcc ccataataga ctaatagcta aagttctctc tcttttactt tcaggcaatt
      181 agcttgatga aatggcctct ttttgtgtac cctggaagtg taaaccgata tcataatgaa
      241 gtatatgatg tttattctat tattttcacc ttgccatgta tgcaggaatg cataaataat
      301 ggctgctttg tctagtacat ttactgattc agaagtaaac tctgtcttaa agatgcagcg
      361 atcccatagc cttctggaca ctgtgactag tccctataaa aactcacatt ttgcccaaag
      421 aagatttttg gccagatgat taaatactgt ttgccagaca ctttcattta tga
//
LOCUS       KCLJ01002168             626 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 241945cal ultra-conserved element locus
            uce-1300, sequence.
ACCESSION   KCLJ01002168
VERSION     KCLJ01002168.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 626)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 626)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..626
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="241945cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>626
                     /note="ultra-conserved element locus uce-1300"
BASE COUNT          193 a          109 c          128 g          196 t
ORIGIN      
        1 tcctgggttg gtgaaatttg tggactgcta ggtagaaatc agaaataaac ttttcatata
       61 gcatttgaca gcaggtgagc ttgtatatag attctctgaa gttgccaaat ggggacagaa
      121 tttcttcaga gtggcctctg ctgtggcacg tttgagtcgt tgtgcgagtg tcttgcaagt
      181 tttgaagcct tgcacttcag ttttgttagc ccgttgaaag aaatctcatt taactggcat
      241 ttttacatct acattaattc ttttaaaaca ctgaagtgag tgttctacag ctatgtaaag
      301 aaacgcatta tcaaagcatt aagatatgat taaactgaca ttttcttaag aaaacgaaag
      361 gagcaggaaa aagccattct aaaaggactg agtgctacat actccagata ttatcttcag
      421 tgcttactca gggatcttta aagaagctta ttaccaagta ccctaagaag acaagtgtgg
      481 atgtgtacag atcagaggaa tgcaagttaa tgcacctgcc agattttact atcgtacaaa
      541 gcatgtcaat cagcactcag accttgcgtt taaaaatgtg ttccttcaga tttttttcag
      601 tgctgtatca cacatagcta gaattt
//
LOCUS       KCLJ01002169             476 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 242057cal ultra-conserved element locus
            uce-7540, sequence.
ACCESSION   KCLJ01002169
VERSION     KCLJ01002169.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 476)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 476)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..476
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="242057cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>476
                     /note="ultra-conserved element locus uce-7540"
BASE COUNT          125 a          110 c          141 g          100 t
ORIGIN      
        1 acttttgccc tgcaggtttc gccggcggcg cagcagatgc agcccacgca gacggtacag
       61 ccaccacagc caactggagg tcgccggagg agggtggtgg atgaagaccc agatgagagg
      121 aggcggaaat ttctggaaag gaaccgagct gctgccacgc gctgcagaca gaagaggaag
      181 gtctgggtga tgtcactgga aaagaaagca gaagagctca cccagacaaa catgcagctt
      241 caggtgcgag ccactgtctg tgcccctgag gacacagagg ggctctttgt gcttgactga
      301 cggtgccttt ggggctgccc ccgcacagtc agctcctagt gggagctcaa gcacaatcag
      361 tctgttaatc aagatgtgtg tgcttcaatt aaagaaataa ttacatttta gcaggataag
      421 ccaaaaagct gtcttgggat ttagaagcct tcactagatg gagttgtatt tatttt
//
LOCUS       KCLJ01002170             603 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 242167cal ultra-conserved element locus
            uce-7753, sequence.
ACCESSION   KCLJ01002170
VERSION     KCLJ01002170.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 603)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 603)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..603
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="242167cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>603
                     /note="ultra-conserved element locus uce-7753"
BASE COUNT          171 a          127 c          116 g          189 t
ORIGIN      
        1 agaaatcaaa tatgtggctg agccagccct aagtgtagct gcaaggctga gatgaaatta
       61 gctcagtctc cagccagaaa atgaggcata atcagttaaa caatatttca tccactttta
      121 tcaagctgta ggacaggcat atctgttgta attatattaa tgaaatgtgt cactccgctg
      181 gtgttagtcc atttcattaa tgcaaaggac ttttgttgta tgctttacat ttggaaacag
      241 atttaagtat taagtggctg atgtctgcag ccggggaatc ctttccgaat ttgtaacact
      301 gaccagaaca gagcgcatta cactctccaa atggtgcatt tttgcatttg aatgtctgaa
      361 ttatcctggt ttcttagaga cgaccacaac accaacatct taaatcctca aaatattgtc
      421 cgcttcattg aatgctcatg atctaagcat atgtgtaatt attctgtaat tctccccaaa
      481 atgtgattcc ttggaaatgc atactagatc tcccccattg tagctgcaat gactatttcc
      541 ctgctcctct cgtaggctca caaggaactc tgtgtgcctt ggtgcaccgc atgtgtaatg
      601 atg
//
LOCUS       KCLJ01002171             756 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 242280cal ultra-conserved element locus
            uce-3927, sequence.
ACCESSION   KCLJ01002171
VERSION     KCLJ01002171.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 756)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 756)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..756
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="242280cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>756
                     /note="ultra-conserved element locus uce-3927"
BASE COUNT          278 a          135 c          134 g          209 t
ORIGIN      
        1 aatgcagaga taattgatca cataggtgtt ttgtcaaatt agaagaccct tgtaacttta
       61 gctgtgctgc aattctcagc aagctttttt aatccgactg agtcacgtac taggaaatac
      121 aaaaggaaaa gagaaagtca tcaatccaaa attccgatac tcaagtctga gccactgcac
      181 attactagaa caaatggaga aagcagaaaa agtcttgctt tgtaacatta aatgtgattg
      241 aagactgtac agttcttctt acgcttttag acgttttgtc actttacctg gagaaatata
      301 cactgcttat tctgaattgc tgctgatgtc cagcacttgt caaaaccgct atctgtcaag
      361 cacttcacaa agtgttgcaa aatgacagat caggatgtct gaatagatgg agccccagga
      421 aaaacagaac agatagaaaa ttcatgactc taaactacat caaagcgact tctgtcaaca
      481 tcatgtcaaa agaaggaaaa aaagaactgt tcattttaga gggttttttt cattatataa
      541 acactttttt cacgtatgag ctaagtgtaa ggaaaaatta acttggtgta cagtatgatc
      601 atttgaatgt gccaaaaata ctctttaaat aatccaggaa taaggaaact tctaacagta
      661 gatactgtct ggcagttaaa accaatgaca tccaaaagaa atgcatgaag aatctatcag
      721 cttaaaatag gacaaaccat ctggctccaa agaaat
//
LOCUS       KCLJ01002172             780 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 242393cal ultra-conserved element locus
            uce-3687, sequence.
ACCESSION   KCLJ01002172
VERSION     KCLJ01002172.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 780)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 780)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..780
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="242393cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>780
                     /note="ultra-conserved element locus uce-3687"
BASE COUNT          241 a          146 c          157 g          236 t
ORIGIN      
        1 tcctttagat tacatgtttt cccacacggc agtgattcta ttgccgctgc tatggaaaaa
       61 cttgaaaaaa tataaataaa atatgcccaa gcatgcaagt caatgatctg tgtgttaagc
      121 ctattggcac atacaggaca attttattgc atgacctact ggttaaaaac atcaaaaata
      181 taagtcaagt catttgaaga actgctgttt agtgagttag aatgaatgaa gtctttattg
      241 agtgcatgct tccagatcca tcactggttc tgttctagcc atgccctatc ctagtcatgc
      301 cccaggcagt ctttttgagg ccacttgacc tgccagtcat atttcagaaa ctactgatac
      361 ggttcctgat ttagtttaga ttccaaacag gctagctgag gattacagac taatgaccca
      421 tcagatgcta aaggcaaagg cttaaagtgc tctagtgaat taagcctcaa cattgtctga
      481 agggaagaat ttattatgtc attaaacttg attcaataag tttcatttct ttggatgcat
      541 tgcactaagc aagaagtcag gaattagtgg gagggattct cttcaggtat attcaagtag
      601 agcagcaagg gatgccattt catagaattt tggctgtatt gctaaaaaca ataggttgag
      661 aaaactcttc atagctgatt aactaaccat ggactcctca aactgggttg acttgaatat
      721 atgcttcact tggtaaatac acagcaaagc gaggcttgcc tgatttgatg agacccttgg
//
LOCUS       KCLJ01002173             524 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 242505cal ultra-conserved element locus
            uce-5992, sequence.
ACCESSION   KCLJ01002173
VERSION     KCLJ01002173.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 524)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 524)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..524
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="242505cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>524
                     /note="ultra-conserved element locus uce-5992"
BASE COUNT          153 a          119 c           90 g          162 t
ORIGIN      
        1 cttgttcagc ccttgcagtc ttcagcacac atctcctcac aaaggcaatc cttgtaccag
       61 aaagcctcag atttgctctc agctcttcca taggcattga ttaggggtcc ttttttcctt
      121 aaaatcaaaa aagaaaaggg acatgatttt aaactaaaat agaatgaagt gcattgtaca
      181 aaggattatt tcaagtaatt ctccttgaaa ctgtaacaaa ggaatgtttc ctggggatta
      241 aatggactgt caggtaatca gaaaagttgt tttaggtttt cctcaagaag aaaattttgg
      301 atggattttg tttctggtgc tttgtgacac tttacagctt attccctcat gtcacaccag
      361 tttatttcat tattcataaa catgctgaat gccaaaatta tcgcagaagc tatggggctc
      421 ttacacaggc agccactaag ccctccccat cctgttgcaa atgcaaggat ccagccctct
      481 caatatcctt ccacagggat tttcttctaa ccaccactca tcct
//
LOCUS       KCLJ01002174             717 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 242724cal ultra-conserved element locus
            uce-6496, sequence.
ACCESSION   KCLJ01002174
VERSION     KCLJ01002174.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 717)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 717)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..717
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="242724cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>717
                     /note="ultra-conserved element locus uce-6496"
BASE COUNT          201 a          138 c          171 g          207 t
ORIGIN      
        1 aatgaagaca ttttcaagca gcaaggcttg caagtcatcg tcttgaaatg cttagatcag
       61 gtggcactct ctgttagaaa agtaagctct gtaatgatat tgattgcttc caaggccaca
      121 ttagagatga agacaagtcc caggagagag gttgttgtca ccttgacctt gggtcagagt
      181 tggaccactg acccctgaca cccaggactt ctgcactgca tcgtgatatc tttcatgcct
      241 acagacaaag tcagcagggg acatgtgtcg atgtggccct tgccaaatca gaattgactg
      301 gcctgtagga agctggagag cagcgggaaa tgtgggttaa agtatgtcaa taatgtttca
      361 caagaacaat ttctcccaag aattgtagct gttggaatgt tttgacattt attcggtaga
      421 gaaatgtagc atgttttgtg aagcacttca agagagctgc tgctaactgc cgcggtgtat
      481 tgatcttcct gttaaattgc atgggcacac ttgggagatc attgagattc aggcaacagg
      541 acagaaagga tcggctgcac ccgatggtca ctaatggtaa ttggtttcga tccttgcact
      601 tgaagaagcc gtgatttact tggttcacag atgaattgta gacactaaat attttgaaaa
      661 gaaaatacac tgtgatttct ttttcttgtg tcatttacaa attattgcct ccacttc
//
LOCUS       KCLJ01002175             386 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 242834cal ultra-conserved element locus
            uce-2064, sequence.
ACCESSION   KCLJ01002175
VERSION     KCLJ01002175.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 386)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 386)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..386
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="242834cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>386
                     /note="ultra-conserved element locus uce-2064"
BASE COUNT          121 a           63 c           82 g          120 t
ORIGIN      
        1 cataggactg atcaacacac ccatttagga gaggcatctg ttaatggccc tgtatgatat
       61 gtgatgtcta ctgccttggc tgaagagaaa gaactgatgt ccaggtgttt gagtttgagg
      121 atatcatcta gaccctgttg aagccagtca ctgctgcact aatttcgcaa ggaatcagga
      181 ccagcaacat ttatattcta gattttaaga cattgtacag aaattcataa gtgtaaaaat
      241 attgcacatt gagaaatacc aataattttt gcgtatgttt atattgtatt gttctaaata
      301 acggggggcc tgtgaaataa gatcctgcta cccatgtact gatgacagta gtgttactat
      361 agttaaaatg gctgtaagaa tagttt
//
LOCUS       KCLJ01002176             692 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 242935cal ultra-conserved element locus
            uce-3516, sequence.
ACCESSION   KCLJ01002176
VERSION     KCLJ01002176.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 692)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 692)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..692
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="242935cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>692
                     /note="ultra-conserved element locus uce-3516"
BASE COUNT          199 a          116 c          142 g          235 t
ORIGIN      
        1 tcatacttgg tgaatgctgt ctgtacattc tggcacatct ttcattatct gcaagtgtaa
       61 acttggcaca gttgcaggtc aggatcatat gatagtgtaa attcaaattg attctgcgtt
      121 gtgcacaggg gagccaggcc ttgccaggag taatatatag taaaggtctt tggggtacca
      181 gtttaggttt gggtttggca ccagaaagac cagagaagtg ggtagtaaaa atgaacagtt
      241 atttgaggat attttaataa cagctgctct gttttcttag cgcactttta ttttatttgc
      301 acttttgtag tttcatcttg atgacatggc tattatttta tagcagtttc aagcagttaa
      361 ttaatgaatt gcacacatgt gacatgacac caccttgccc aataatctct ggcatctgtt
      421 tttatggtac tgttgctttg tgaattgttt tagattgtaa attggcactg gaaactgtta
      481 ttttaatact caaaacaata caattgtaat gcttgatgga tgacatgcat cagtgacaaa
      541 ttgccatgca tgatctcatg aaatccacag accatcttgg agatattagt taatgcttct
      601 ctgttcatta gatgtgaacc tgttataaaa tccacaacac cttatgaagc ccgattgcca
      661 tattgctgac aacattagga agggaatgta ta
//
LOCUS       KCLJ01002177             544 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 243045cal ultra-conserved element locus
            uce-1996, sequence.
ACCESSION   KCLJ01002177
VERSION     KCLJ01002177.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 544)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 544)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..544
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="243045cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>544
                     /note="ultra-conserved element locus uce-1996"
BASE COUNT          172 a           89 c          122 g          161 t
ORIGIN      
        1 aaacaattca aaatatgcaa ctaatatcgt ggagttaaac tgatgcagca tgcatgttgt
       61 tttgcaagct aacaggttaa atatggcttt gctttaagat tcccatcaaa tttcattttt
      121 atagagaaat ttctgaaagc agaagggggc tgagggaggg tgaggtaaaa agaaataaat
      181 cattgtagtc tcaggaacag taatccttgt tgaggatttt ggctgattga tataaataac
      241 atcgtccccg ccatctgtcc gaagagggac ctttccagtt agtgttaagc tgcaacggca
      301 gaataattaa tgaatggtgt cctttgtgct ggtaataaag acaagacaaa ttatgttata
      361 atccaactgc tgctcatttg tcacagccaa ataaaatgtc aaataaaagt gaggggggca
      421 ctgtgtttgt ttaatggact gcaagctacc tgttcgtatt gttgacagac aactatagtg
      481 caagttgtga atgtggaagg cggcaaaacg ccgtgtatcg aattcagcaa ttctcccttt
      541 ttct
//
LOCUS       KCLJ01002178             712 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 243143cal ultra-conserved element locus
            uce-6598, sequence.
ACCESSION   KCLJ01002178
VERSION     KCLJ01002178.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 712)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 712)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..712
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="243143cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>712
                     /note="ultra-conserved element locus uce-6598"
BASE COUNT          203 a          164 c          133 g          212 t
ORIGIN      
        1 ttataaatat ttcataccaa atatttaaca ttattccttc cccaatcgga tcagctttga
       61 aatgctcctc aaagtgaatt ctcccctaac aatggcttga cgcaaaagcc ttttttctct
      121 cttaagaaga gaaggctgca catggtctgc taccatagca gcatgaatag ttcttattta
      181 atggaaaata aaagatactt tacattaatt cagtggggga tggaaagctg ggcacatgcg
      241 taccttgcgc ttcaaacatg gaggagcatc ataccttgac ctcccctctc ctggtcccat
      301 gattattacc cagcttgcat tagaaccgta atgggaagtg acaagtttat gtaaatgatc
      361 cacacaagga ttttgctctt gtaaaacaga gcagttactc tgggctttct aattatttca
      421 tgccttgtgg ttctgtgatg gggcaaagat gactattact tgaaaagtat attgtgattg
      481 acaagccact gtccccctgg aactcattaa ggcctgtgct ttgcgagagc gggtaaaaaa
      541 ccctaccagg caccccagcg ccagctcttc cttcagatca tttgttggga tttctgcact
      601 gatacagaac agcacaatct gcatgtatct caaacaagta ccacctcctg gctacaaatt
      661 gaccaattag cctctgcttt cactttttca gtttcaaatc tgtaagatta gc
//
LOCUS       KCLJ01002179             741 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 243253cal ultra-conserved element locus
            uce-6906, sequence.
ACCESSION   KCLJ01002179
VERSION     KCLJ01002179.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 741)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 741)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..741
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="243253cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>741
                     /note="ultra-conserved element locus uce-6906"
BASE COUNT          196 a          159 c          156 g          230 t
ORIGIN      
        1 agaaataact aaccaaagtg catggaaccc ctgccagcag aaaaatatta tttccttctc
       61 ctgagtgttt agtataacaa tataagcact gaccgttgtg tactttggta ttattttcct
      121 ttcctgcttg tagtcacttc tcatgtttct ccatcatttt aggcccctaa tagggatagg
      181 atgaacccat tgatgtcggc acatggaggc ctgctagtgg catgcctttg gttttagtct
      241 cctagcagca gccattcatg ttatgtgggc tttctttttt gggcattgcc cacccctgaa
      301 tctgacttca ggcatttttc actgcctgtt ctgcatgaat agccacaggc ctcttgccaa
      361 ttgtcccccc tccttgaaag ccagcttcag ccaaaggcct tttcaagtgt gatcccagag
      421 tgccacacag gctttcaggg tattgttgtc gagatgaggg ccctgcactg gaaagtgggg
      481 tcagaagaga aagcacaata aggggtgatg gaggcttcat gcagtcctca gatgctggcc
      541 tgtttattaa tttacaaaac taatgtcact gtctttagag gagagattga gtgaaaaaga
      601 tgccctttga agagaagaac tgcttttgat acattaccaa aacactgctt tattaaattg
      661 attttaagta cagctaataa aagttcagaa acaccaataa aatattgaag gtctggattc
      721 agtgttttct ttttcttcat c
//
LOCUS       KCLJ01002180             767 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 243366cal ultra-conserved element locus
            uce-7642, sequence.
ACCESSION   KCLJ01002180
VERSION     KCLJ01002180.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 767)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 767)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..767
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="243366cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>767
                     /note="ultra-conserved element locus uce-7642"
BASE COUNT          187 a          199 c          148 g          233 t
ORIGIN      
        1 cctgtgacgt acagggggca ggttaggaga gaagaatggc tccttgaaag ccacctctgg
       61 catgactatt acaagagaca atgaactcga acatgcttct ctttttttcc tccaaagatc
      121 atgaactcga aactcagttg tgcatgcatg aaagttctat aaacattact taaacagcag
      181 ccaaaagacc tttgccagct ctggcctact tctccccttg taggggctca gcactcccac
      241 tcagttgact acttgtccta ctctttgccc tctctgctct gctgcaatcg tcctggaatt
      301 ttcctctatg caactgctgt ccaaaccagc tgcacccact acatcttcag cagtggaccg
      361 aggagggtat taatcatatt tttgaggagg acactctgct atttatctcc ctgacacctc
      421 cagcgtttgg gagcccactg cagcacacag cccattgact agtaatatta cacattaccg
      481 tgctccattg cctctccctg ccctcttcat tgagtggctg ttcaacagtg gagttgtgtt
      541 tgttcaatca gacataattt ataccttttt tgttccttct ggagagctct tgctaatttt
      601 aagcctaagc actgcgtttt ccatgtaatt ccagctccga cgtcctgaag atggtcagag
      661 agatctgact cgctcaaact tgttggtttt aaatcaccat caagggagat catctcatac
      721 ttcctttaaa gatccaggtt ttattgcatg tctaggaata tgtatgt
//
LOCUS       KCLJ01002181             893 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 243479cal ultra-conserved element locus
            uce-1933, sequence.
ACCESSION   KCLJ01002181
VERSION     KCLJ01002181.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 893)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 893)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..893
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="243479cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>893
                     /note="ultra-conserved element locus uce-1933"
BASE COUNT          253 a          164 c          199 g          277 t
ORIGIN      
        1 taatccagta gatgatgtta taattaagat gaatatttat ctcatgttga agcatattcc
       61 ttgcgtaatt ggcagaatag ctagtgaatc cttcagacca gtttggtttg ctctttttgt
      121 ggtgaggtaa tgttgcattt atagttaatt tccttttaaa ttgttttaca gaatgatttc
      181 agattatatt aacaaataaa aagggcatga cagaaagaaa agaaagcagc atgataaacg
      241 ttgtgacctt ctagtgagaa acagtatggc atgcataaag ggctgctgca ttaagtggac
      301 aaggggggag aaggaagtgg gtaattattt gtagcagtgc ttttactgtt gttggaatga
      361 gacagactaa cagtggcagc agtcattttg ctgaatcaaa gtccatgtta gtcgcattat
      421 acactgccac aaaaggttgt taaggctggt attagcatgt accactgagg acattggaag
      481 gactcgatct gtcacactaa atcgccttct tgccctcaac cattgaagtc tccagctcct
      541 ctgacatgtt ctttcattaa tggcctggcc ttgacaactg atcctaattg cctctgaacc
      601 gcacttcatg tattattggt gtctgcctgc cctggttctt gtcaacaagc cacagcatgc
      661 acagggtgtg cccggtgcct tttgctgaaa tgatgctcac atagtcgttt acctctgagg
      721 gtttgggtct cgctgggaat gaagtataaa gcgaaagatc ttcctgtctc ttcttagtaa
      781 tactttaatg tggatctgtg ctatgtactt attaggcatg tatgaagact cagtgtagca
      841 tcaggccaat tatgcaagat tccattaaag cagagacaaa acaaaacttg cct
//
LOCUS       KCLJ01002182             696 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 243590cal ultra-conserved element locus
            uce-3196, sequence.
ACCESSION   KCLJ01002182
VERSION     KCLJ01002182.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 696)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 696)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..696
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="243590cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>696
                     /note="ultra-conserved element locus uce-3196"
BASE COUNT          214 a          169 c          160 g          153 t
ORIGIN      
        1 aacatcttgt aactctaccc agccttcttc ccacccctta acatcccacc ccatcagcgc
       61 cgctccccca gcacaaattg ccacacatct gtacaaagga caggcggaag aataaggtga
      121 cagttcttta aggaaagaat aaaaatgcaa attaacaaac accaaatttg ctgtaaacat
      181 taaatacttc agacatgaaa ccttctgtgc tacaagagcg ctttcagcat tatctattca
      241 cagcagttcc tctgctcctg agggtcataa acactgagag atggagccag caaaaaagct
      301 ctagttgaaa ttcagctcac agcaaaagca atttccgagt gtgcaaagtg ctgtcagcag
      361 gcctgatgtt tgtgtatgaa atatagacaa tatgactggc ccatcggcag tcactgtcag
      421 cctgatggat ggggcctgag caggagtaaa gcggctgccg ttagggccca gtctatcaga
      481 tgcctgatgg agattcgggg gcttaatgga ggtaaaagtt tcttctaatc gggtttccag
      541 cagtgatcac agagaaaata aaagggatag cgatctgata ccagggcacg agcaaggctg
      601 cccccggcac aaagcagagg agggaagaga tgcattctca atatttgttc ttggactcag
      661 ctgtccccaa acagacagga cagccctaag ggtcac
//
LOCUS       KCLJ01002183             523 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 243703cal ultra-conserved element locus
            uce-4975, sequence.
ACCESSION   KCLJ01002183
VERSION     KCLJ01002183.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 523)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 523)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..523
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="243703cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>523
                     /note="ultra-conserved element locus uce-4975"
BASE COUNT          184 a          103 c          103 g          133 t
ORIGIN      
        1 atctctgccc cgacatatat tacaaaaagc ttccgctgtt tgcaggtact tctgacagag
       61 caaaataaag ctcaagtaat ctgccaactt ttaaaattta cttttatcta gctgaagtca
      121 ggtgttttgt cataataaac tgaaacaaag gcttttttta ttgctcaaga tattcaatgg
      181 cttttgtgtt cctagcgtca gcaggaacgt cagaggattg tatccaagga gctaaatgtg
      241 caagacctag ggtcaaagca gctgaataca ccaacctcag aaaacacaga caatgaattg
      301 caaatgacac tcaaaacaaa acggggaaaa aaccttcaca cagaaaacta caaaagaact
      361 ccacagatac tgaattggct ttctgtacac actgatcctg cttaactgtg tgtggtaact
      421 taccaaacct tctgagacta atagtcataa aatagagact caggggtggg gaaaagataa
      481 tggaatgggg gagaactgta aggaaaagat tgcattgctc ctc
//
LOCUS       KCLJ01002184             443 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 243812cal ultra-conserved element locus
            uce-4474, sequence.
ACCESSION   KCLJ01002184
VERSION     KCLJ01002184.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 443)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 443)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..443
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="243812cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>443
                     /note="ultra-conserved element locus uce-4474"
BASE COUNT          130 a           82 c           80 g          151 t
ORIGIN      
        1 taatgtgcaa tgaagaggaa ccagcagatg ttatgaaaag atgccaatta agtaaaatta
       61 acactaatta tctagattga ccatgagcac taagaacatg cacttactgt catgatttca
      121 attaaagcat tgtagcttgt ggttttaaat tttattaagt gcttgcactg atttttttct
      181 tggtggcctg ccccccatga atgcaaaagc tttttttgca attttctctt aacctatcca
      241 ctgtgtatta gacaagtcta ttaattatta tagactgtta ttgcagcttt cctgaccttc
      301 acattgggtc ctatctatgc tgatctaaat gcattgtttt aatgatttcc aaaaaaaaaa
      361 aaaattcaag gcaagctttg atgtggcttt agctgcctcg atcgtctggc cgcatctcag
      421 agatgtgtca cctatgccgg gag
//
LOCUS       KCLJ01002185             525 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 243909cal ultra-conserved element locus
            uce-1059, sequence.
ACCESSION   KCLJ01002185
VERSION     KCLJ01002185.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 525)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 525)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..525
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="243909cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>525
                     /note="ultra-conserved element locus uce-1059"
BASE COUNT          152 a          122 c          101 g          150 t
ORIGIN      
        1 aagcaaaaga aaatgcattt gtttgaccca accagcctct aacacagcct cggcaccaac
       61 tcttaatatc tattatttat atctgaccaa aagcaactcc tgcatttcta gtgggcacca
      121 tgaaggaggt atttatgtcc cccaggaaag gctgagcaca cctgagtagc tctgaagtgt
      181 gctagctgtc gtggtgtgca ctgattgcct tatcttctca tttatcacag atgagttgga
      241 accaaccttg ctgaaaccca cttgctttgt cctgatcaaa ttgcaagatc cttgtttctg
      301 ttttgctgtt gaggggctga cacacaccca caatattgca aaggtagcat tcataaaata
      361 gaatcaactt ttagtataaa ctcctctctg ccaccaccta aaactgctca gcgtggctgg
      421 ttaataaggt caaatgaaaa gagaaataaa attgattcgt ggcaatgctc tcaacaagac
      481 cttttccttg ctgctcttag atttccagtc actgggttga aagga
//
LOCUS       KCLJ01002186             550 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 244015cal ultra-conserved element locus
            uce-442, sequence.
ACCESSION   KCLJ01002186
VERSION     KCLJ01002186.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 550)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 550)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..550
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="244015cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>550
                     /note="ultra-conserved element locus uce-442"
BASE COUNT          197 a           84 c          104 g          165 t
ORIGIN      
        1 ctctctaatc acaggatgag cttttaaaag gaaaacaacc gggtccagca ggttctcgct
       61 atgatatttg ctgggggata attcaattat tgtagaaaat tattttaaac attaagatgc
      121 acaaagttca gtttcccctg tttctgtgac tatcacccaa gctattgata agatgtctaa
      181 atttattgca gaataattct gcaggaaaag agataaaagg ttcctgaata aaatatgagg
      241 cgagagctgt aaattgtagc aatgcatatc atttcattca aatgtaggaa gcaattacca
      301 tctgctatac tcatcagttc cctcctttat gacttaatta tatgtttaat gctatcagat
      361 caaggaaagg gcacaataga tgaatgagtg aaagaaacag aaaagattca gcaacaagac
      421 aaaaggcaga tgaaaagtaa cccaagaaca gaattgattt catttgttgg gagaggagtt
      481 aatttaaaca gtatattcta tcatctcctg tgctgtactg agataatata aatcatgtgt
      541 ttgtgaattt
//
LOCUS       KCLJ01002187             333 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 244120cal ultra-conserved element locus
            uce-3121, sequence.
ACCESSION   KCLJ01002187
VERSION     KCLJ01002187.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 333)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 333)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..333
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="244120cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>333
                     /note="ultra-conserved element locus uce-3121"
BASE COUNT          105 a           79 c           44 g          105 t
ORIGIN      
        1 aagtttctta caaaacaaag ttggtccctc aaaagaagac actccccctt ctactttcag
       61 aagaaagttc tagaagttct taccgtcaca tttttgtgtt acttcattaa acttgtgtcc
      121 agctgggcat ttgcactcaa aagatccaac agtattaatg caatttcccc cttgacagat
      181 cccagggatg gcttggcatt catccacatc tgtgatataa aaaacaccca cttttatttc
      241 atttctcaag aacagccata ataatttgtc tacacagaaa tgaaatatgc ctaaatccgt
      301 tcttcaccca tcataatatt atgatacttg ctt
//
LOCUS       KCLJ01002188             585 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 244219cal ultra-conserved element locus
            uce-2489, sequence.
ACCESSION   KCLJ01002188
VERSION     KCLJ01002188.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 585)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 585)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..585
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="244219cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>585
                     /note="ultra-conserved element locus uce-2489"
BASE COUNT          185 a          128 c          104 g          168 t
ORIGIN      
        1 aaagatattc tactataaaa tattactcgg ttgttaacta actattcaag aacaaagtta
       61 aagaagaaat tattaccatt ttcattatac tacaggaggt gagctgtagc tttttgttac
      121 ctgctgccct gtcaggcctt attattttca caaagatctg acaatcgtga agtcatattt
      181 gttggttgct tgtgacaaca ttcaaaaggg acactatata tcactgaaac agctcacaaa
      241 ctagctagtc acattattta ttatgagcca cacatgtgac aaactattta actcagtgac
      301 tcctaataag tcaaagagca agcaattagc taacacacta tgagggctgc tcgtggcaat
      361 ttatagatgc tctcaagctg tcacagcact tcaaagtgcc attccctata atgactcact
      421 tgatatgaca agcaatacac agcacacaca gcagcgatga aattggcagc caattctgtt
      481 ccttgaaact tccccaacag ctgtttacat gtttgcagac ttctctcctg cgctggaaat
      541 gtggggcact gtgctccaac agagcaagag ctgttcaagg ctgct
//
LOCUS       KCLJ01002189             455 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 244327cal ultra-conserved element locus
            uce-6077, sequence.
ACCESSION   KCLJ01002189
VERSION     KCLJ01002189.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 455)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 455)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..455
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="244327cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>455
                     /note="ultra-conserved element locus uce-6077"
BASE COUNT          167 a           91 c           69 g          128 t
ORIGIN      
        1 aaatcatgac aagtgaaaca acttgctttg gttgagaaat cacttagcct gtcatcattt
       61 tacacaacca aaaacagtgc tggccataat ctgctgcctt tcaagtggaa aaatacatta
      121 cttatgcaga gaatgtttct aatgtaacaa agagaaggaa taaaaatgcc ttacaacagt
      181 tttattaaaa acaaattccc acagtaaata catatacact ctagtaccat ggtgaaacag
      241 ccaaagacat cactgttaag tgctatggga agtacttata aattacttga aataaaaaac
      301 attgttgcct ggacatcagg gttgaaatgc tgcagtttgt aataaattaa cacagaactt
      361 cacttcccct cctctaacaa agcagccatt tgtctgaata acccacattc agctgtgagt
      421 tatattttca caactgcaac tgcattcatt tgcaa
//
LOCUS       KCLJ01002190             510 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 244435cal ultra-conserved element locus
            uce-3812, sequence.
ACCESSION   KCLJ01002190
VERSION     KCLJ01002190.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 510)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 510)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..510
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="244435cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>510
                     /note="ultra-conserved element locus uce-3812"
BASE COUNT          138 a          100 c          129 g          143 t
ORIGIN      
        1 ttttggggag agcctccccc ctccctctgt ggaaggcttg atgtcccagg cattacctca
       61 cgttccacgc cactcagtga gtcaaactct gctaagtaac taaataaaga tgtaatttta
      121 atgatgatta aattgaagca cctcattaat ttcatgtgag aggtggggaa gtacaggcag
      181 ctctttccct aaattcattg tttgtctggc cgccagacgt cccctctcaa cgtctggttg
      241 agtctaattt aagtatgtaa atttaatggt tcagtaagta aaattgcctt tattgtttgc
      301 aatggtttgc acagtaattt acgagccagc aaggctcatt tgataggagt gtatgatgga
      361 gtaggtgata cagtgaagga catgtttatc ttaaggatac agaagaacac agatctggac
      421 catctgtaat cgaggacctg ggcatggatg tgctgctgga gacgagcctg ggacaaagca
      481 gccctgaggg ctcggcatgg aatgagatgg
//
LOCUS       KCLJ01002191             612 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 244548cal ultra-conserved element locus
            uce-4719, sequence.
ACCESSION   KCLJ01002191
VERSION     KCLJ01002191.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 612)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 612)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..612
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="244548cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>612
                     /note="ultra-conserved element locus uce-4719"
BASE COUNT          196 a          103 c          113 g          200 t
ORIGIN      
        1 attaacttac actcaggaca agcttttcat tcgccctcat ctgtagagcc aagttattat
       61 aatggaagcc accaacaggc taaggaggga aggaatttaa gagtttgtga gaaatgtatg
      121 ttaaaaatct gtttaagaca atatgaaaaa ctgctcacgt acatacaaat aggtgaaaat
      181 tctttttcag ctttatttac ctgagaatga atttcagttt gaagaggcct ttatgtcgtt
      241 tcaggcaaag cacctaagat ataagcaatt ttcaacaaga gtactacaca tttgtcttta
      301 taacaatttg tatgtaacag cttttatgca aatgatgcta aagtggcacc ttttttctaa
      361 attggacatt tttatggtta taattttctt ctgtaataac agcaaaaaaa tggttgtccc
      421 agtggagttg agcatttcat ctctagtgct gttttgtgaa gttggaatga caagtttctt
      481 tcatttgcac aaagaatgac aaaaagaagt attttttgtc attcttgtct gacttggttg
      541 aggcagttac acttggaagc agcaccagtc ccctgacacc aacctctgcc atcaagaatg
      601 gtatcataaa gt
//
LOCUS       KCLJ01002192             623 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 244656cal ultra-conserved element locus
            uce-6398, sequence.
ACCESSION   KCLJ01002192
VERSION     KCLJ01002192.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 623)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 623)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..623
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="244656cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>623
                     /note="ultra-conserved element locus uce-6398"
BASE COUNT          189 a          109 c          117 g          208 t
ORIGIN      
        1 gaaatcccct tatgtctgaa gctgtccctt ttaacacaca ccagactaat tatttaaaag
       61 ttcttgtaaa attagaagac atagcccagt cctttaatta gaatacactg tgaataggga
      121 tagcatatgg aggggaatgt caagaagagg gtgccagggg cagatcctag gaaatctgta
      181 ttcatttctg cctcctattt gttcagtaat ctctaccatc ataactaaat cttggagcac
      241 tgatgtagtt cgagttgttg ttgactcaac gtcaaaattc aatcactggg ggttttgcat
      301 cagccgggcc acttatttgt ctaataaatc cgtcattttg taagaaaaat atttgagcag
      361 ccgtacttga cctcttggta tccacaagcc acatttattt ctaccagttt acaaatgcaa
      421 agtggagatg atcatcttaa tgcctcgagg tactgtgttg atttctgatt ggattttaga
      481 tggaaatgtc tattttaaat accccgtgat taaattgtac atataataga attcatgcct
      541 cttcaaacca aatcgtgatt tgtgaatccg gaatttattt taaaggaaat attatttaag
      601 atggtttctt aaatgatttg tga
//
LOCUS       KCLJ01002193             514 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 244982cal ultra-conserved element locus
            uce-6700, sequence.
ACCESSION   KCLJ01002193
VERSION     KCLJ01002193.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 514)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 514)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..514
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="244982cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>514
                     /note="ultra-conserved element locus uce-6700"
BASE COUNT          176 a           98 c           76 g          164 t
ORIGIN      
        1 ttggttaaat aataggaaat atacctaggc atacacaaaa tacaactaac tgctttgcat
       61 ttcactcagc aatatgccag tatacccaag catctcaaca tcactaacct ctgtaaaatg
      121 ctgtagaaaa aatggcctaa acaaatgaaa tgttgatctg ccttttatta atttcatttt
      181 ttatcttctt gtatacagac gtttgacagc tgtgacattc atgggcaatg cattcgaaaa
      241 agaagacata aatattcaga gacatattag aatgctgttc aatgtaagca cctgtctact
      301 tagtgttgac agaaaatcat ttactttgct ttatgcatgt tctctccaga gactacagag
      361 gtcctatttt atttaaggag ctggtcccaa catcagtctt gaaaatgcaa tatatacatc
      421 taattatatt tattaaggaa acaactttgg cttatactaa tactgaaacc attcaacctc
      481 tacttcagaa tttccttccc tggggaaatg aaag
//
LOCUS       KCLJ01002194             454 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 245091cal ultra-conserved element locus
            uce-7858, sequence.
ACCESSION   KCLJ01002194
VERSION     KCLJ01002194.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 454)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 454)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..454
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="245091cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>454
                     /note="ultra-conserved element locus uce-7858"
BASE COUNT          144 a           70 c           61 g          179 t
ORIGIN      
        1 ataacttttt atattttgtg catgtgtatt ttagaaagaa atggcgtagc ttggaaataa
       61 aatgctacat tttttcctgc tgttgttaaa ttatattaaa gtaggaaagc acctaagcag
      121 agaagtgtga attctgccaa tctcaaaatg taacgcttat tatctttaaa agcattttgt
      181 tacttttata atacctgaag tgatataata gtgtcagtca cttaaccaca tcttagagta
      241 tagtatcttc atcttaagta ctattatttc cagtatttta ataattttca cacagtcctg
      301 aaatgtgatc ttttgtgctc tgatgacact taaattaata gcataatttt ctggtacttg
      361 caacagttgc tttccatttt gatacatttt tctatatcac atacagataa atcctctaat
      421 aatcattttt atctttatct tccgggaatt caaa
//
LOCUS       KCLJ01002195             507 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 245200cal ultra-conserved element locus
            uce-3539, sequence.
ACCESSION   KCLJ01002195
VERSION     KCLJ01002195.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 507)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 507)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..507
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="245200cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>507
                     /note="ultra-conserved element locus uce-3539"
BASE COUNT          145 a          108 c           96 g          158 t
ORIGIN      
        1 gctgctgaaa tgctgacccc tgctctgccc ctacgcccct tgaccctgac acatctgacc
       61 agtgatgact ctgagggtgg caaattaata gcagcattgc ttgttaattg cataagagaa
      121 aagccaaaaa tttatcacct cagtcatggc cattgcttcc ctttgacccc cttctcccac
      181 aaggctttag ctgatggtca catctgtggt ttttctgtat cctgcatatt tgctgtataa
      241 ttattcagca tcaaacctta ttaatcaaat cgatgctgtg ttttaaatgg aaattactgg
      301 attaatacaa gcattcattt catcctgaaa atcttgatgg ctttagcaca tggaatacaa
      361 gcagaatatg aaagaaggga tgtagagacc tgattgaatt aggagaggca tgctgcacat
      421 taaattacat atgccagcag gggtccttgc ttttatagta aaatacttct gtagagtgta
      481 tacatataaa cctcctgtga tttcttt
//
LOCUS       KCLJ01002196             665 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 245305cal ultra-conserved element locus
            uce-5724, sequence.
ACCESSION   KCLJ01002196
VERSION     KCLJ01002196.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 665)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 665)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..665
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="245305cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>665
                     /note="ultra-conserved element locus uce-5724"
BASE COUNT          198 a          121 c          128 g          218 t
ORIGIN      
        1 agaaattctc atccaggaat actcctggga agattattaa aatactactg acatcggcta
       61 caaagatcta cttgtgcata tttctttaaa gggggttaat acacagtatt accatagcca
      121 ggccctatta taccattgta atcataagca agaacggtga ttaacgatgg caatttattg
      181 tatctgacga ggggagaaaa taggagatgt tgtcgttatc ataaatcata tcataaataa
      241 ccaaagagaa gtactcagaa agcttgtgtg gtgtcagcag caagcccttt caggcacgtt
      301 agcccaggat gtagccatag aaaccccaaa gtcatattgt tatcttagtc ttgctgcagt
      361 tatgtgatac aacagtatta acatatagat taggccattt ataatactag gtgtcatttc
      421 aggttggctt gcttatatag cattttagtt tttattgtgc cgaatgttag ggaaacgctg
      481 catttttaca ggtcagtata gagccattta taatgtatca gcttcacacc tctgtcagtc
      541 ttgctaatgt actccgttat tgattggttg tactctatga attgtcattg cctaattacc
      601 ttgtctttgc taataatttt aaaaatgttc cctctgtgcc tgcacgcata ctttgggaca
      661 agttc
//
LOCUS       KCLJ01002197             419 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 245415cal ultra-conserved element locus
            uce-33, sequence.
ACCESSION   KCLJ01002197
VERSION     KCLJ01002197.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 419)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 419)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..419
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="245415cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>419
                     /note="ultra-conserved element locus uce-33"
BASE COUNT          128 a           79 c           75 g          137 t
ORIGIN      
        1 tttttcaata ttcaggccaa tgtattagca acaaaatgtg gctcacacac ctataagaac
       61 agttttaatg aagaatttta ttcaagctta tttcgttact tttcttggta gtgtgaactg
      121 tgaattaagt tgaatacaaa aggttttcac tgcactgaat tacctgtttc accttgaaaa
      181 gccacatgaa atgaagctct taaagccttt tgaaaatgac ctttttcctc agcaatgatt
      241 tatctttccc ctcgaaaatc ccttttacaa aagggagtat gattaaagga agccaagcag
      301 cacaaacact cggtgaagat cctgcttatc tggaactcac ttgacaatgt atgttttggg
      361 ggtcgggaat gctgcaggtt caagggataa ttctgccttt caagcacttc aatttattt
//
LOCUS       KCLJ01002198             444 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 245519cal ultra-conserved element locus
            uce-3454, sequence.
ACCESSION   KCLJ01002198
VERSION     KCLJ01002198.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 444)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 444)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..444
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="245519cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>444
                     /note="ultra-conserved element locus uce-3454"
BASE COUNT          151 a           85 c           67 g          141 t
ORIGIN      
        1 gacctagaaa agtctttgaa aattgtgata catctttcat attaccaaaa tgacgctgtt
       61 atttaaagca ctgaaagtgc tctttgaatt ctatctcaat atttaaccaa taatatttaa
      121 agatgttcac atgaagcgag tatcttaccc cagtacactt ttagatatca atcatgctgt
      181 attaattgaa aggatttggt ctaatctcat aaagaaacag gcaaactctt ggcttttctc
      241 taaagtaaaa atatatcact catgtcatcc attactgtgc tataattatg gtaagtgaag
      301 cagaacagaa tcgatggagc aatttatcaa tgcattccca actattcctg cacagctgac
      361 gtcatgtggc tgcagatact gtccttcaat ataaaagata cccagcagtg tcaagacttt
      421 attctgatct actccagcat aata
//
LOCUS       KCLJ01002199             809 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 245622cal ultra-conserved element locus
            uce-2080, sequence.
ACCESSION   KCLJ01002199
VERSION     KCLJ01002199.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 809)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 809)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..809
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="245622cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>809
                     /note="ultra-conserved element locus uce-2080"
BASE COUNT          247 a          155 c          155 g          252 t
ORIGIN      
        1 aattatatac aaagaagcaa ttatggttgt tctgagagag atggaaattt acactttgta
       61 aatatggccc tgcttttcct aaaaggcatt tatttctgca gtttttgtat ctggatggat
      121 gtcagtgtat gtttacctgt ctgtgtagga ataaaatgaa aaactgtgcc tttgtatacc
      181 ctgcctgtgt agttgtatgt gtgagcatgt aataattcat agtcccataa gctcttggtg
      241 gacattgctg cctcagtcac tcagccccca ccatgaaagt cccctaacaa acaggattaa
      301 aattcactcc tttcaaccat cccaggcatt tattccttcc ttttcattga gctacatttg
      361 tctgatttaa caagataaga tttgagtgct gatgcagccc gttgttaatg cagcagccgc
      421 atccgccata ccatcgacac tgtgcatcag agggatgcat aaatcaggta ttcaaaaaaa
      481 attagatatg cagcacacca gttttatagt cccagcctca gaaattgaaa tggcccagat
      541 taatgtatta tatcttacac actgtccgag tgaatcaact ttaatatatt gaacagattc
      601 gcagaacaag actttgttat ctaaggagca ctcggaagga ggaattgacc tgaggatttg
      661 atttggttca ggtagttcat gttgtacagc agcatttgaa tagtttcaca taaaaataaa
      721 atttgtatca gaaatatttc acatcattct gggcttgttc gtattgcggc tctgcagaat
      781 attacagaaa caatgtccag caaaaagat
//
LOCUS       KCLJ01002200             724 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 245732cal ultra-conserved element locus
            uce-4968, sequence.
ACCESSION   KCLJ01002200
VERSION     KCLJ01002200.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 724)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 724)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..724
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="245732cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>724
                     /note="ultra-conserved element locus uce-4968"
BASE COUNT          187 a          148 c          158 g          231 t
ORIGIN      
        1 tgggttggtg gatggcgtta gctttccaca gaatgactta cttcaggtag cactgcaata
       61 cccatctgaa tccagccata aggaccttca ttatattgtt tgcacttgct tagaaagaaa
      121 accttttcct ttctagccac agataaggca acagaaagac caatttgtag agcttataaa
      181 agccacttgt taatcatatg cagtacaatt attaattgga tgtattaagt caactgtaat
      241 tgaaatttgc ccttttgtta cctgggcatg aattattttt gaaatgttgt cattacccgc
      301 cctgctgtga ggtttatctc ttctgttcat cctaattaaa taaaacatac tgttgtttgc
      361 tggtctcgtg ttgaactgaa ttacctgcct gaaggctcgc tggtgtcggc ttgcttcttg
      421 ttgcagcagc agccgttgac taacacattt acttttagat tttcatttca aagggctcag
      481 tttgtgcagt gtgacaggtg aatggtgaat gctttacagg actttcaaga gctgaacaaa
      541 cagcaaagga cttattgcta ctgcagccgc gtggcaagta caaatgtaag gcagcctttg
      601 tggcaagtgt ttcctttgct gcatagaggc cactcaggag acctgaaggg ctcacttggg
      661 tatgctgggg gtgaaataat ctcagtcgtg atctcattta aacccaccct acctgtgtgt
      721 tctc
//
LOCUS       KCLJ01002201             542 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 245842cal ultra-conserved element locus
            uce-5080, sequence.
ACCESSION   KCLJ01002201
VERSION     KCLJ01002201.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 542)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 542)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..542
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="245842cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>542
                     /note="ultra-conserved element locus uce-5080"
BASE COUNT          161 a           94 c           92 g          195 t
ORIGIN      
        1 tgatgatgtc ctcacagcat aggtatttaa tggtttaccc ttgtatatat gatcatgaat
       61 ttcaggataa atttaagatt gaaagaaaca ttattctgtg gcgttgtcta ataaactgta
      121 taataaatta actgagattt aaaggcattt ttaaatcatt cacttaagca tttaaattat
      181 aggtacaggc tagatgactt tccatgcatg tgaactctat tattctgtca gactgaccag
      241 tggtcttgac tgttcaaagg tcagtggtca cagttgtcct gaattaccag tccttttttc
      301 atgaggaccc tctgctgcgt tgcatgctgt aatcttctta atggcttcat tccaatattc
      361 acacataata ttttagattt attgactgtt agaaatacta ccatgccagt agcagttccg
      421 ctactcctaa ggtatttaaa attggaagaa taaatcaggg caagactttc aggaatcctt
      481 tgttttcttg gacactcttc tgacaagaaa gcttgttttt aaatttcatc atttcactat
      541 ga
//
LOCUS       KCLJ01002202             806 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 245953cal ultra-conserved element locus
            uce-19, sequence.
ACCESSION   KCLJ01002202
VERSION     KCLJ01002202.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 806)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 806)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..806
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="245953cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>806
                     /note="ultra-conserved element locus uce-19"
BASE COUNT          280 a          147 c          152 g          227 t
ORIGIN      
        1 aaaagcccag agggagacag aaagctttgt gcatgtaggt cctagatcta actttctctt
       61 atttcctttc tcactagcca cgaagtcaaa aatgagcggg ggcactgagc taacagagaa
      121 gagagtttaa agagttaaag aagtaatact atttaaacag ggttgcagaa ctcctattaa
      181 aaatggcagt actataaatg ttctagtatt gtcaggaatg ttctgttgga tgacactata
      241 ctgtgatttg tacacacagc ggaccagagc tgatgggtga atgaaatgat ccataaccct
      301 cactgacaca tttagagcag ttcagctgca cacagagaac agtccatcat ttgcaccctt
      361 ctgtgaaagc tggctttacc aagtgtttca atgaaatatg tgcaacttcc catttaaatt
      421 agtaccacat gaaccatgaa gagcaccaca ggtatctgtt gtagtaccag cctaatgcaa
      481 aagtggcctg tcttgtaatg ctctaacagg aaagacatac aaccattcat ctgtaacata
      541 ttaaaaccag aagaaataaa ttactctata gatgaagaat tattgcttgt ggagagaatg
      601 tgcaaaggta gttctaaaaa gcagctttta ctaaaaaatt attgcaacag catttgaatt
      661 cctaatgcat attaaaccta gttcgcataa tcataaatca tcatttttaa atcaagaaaa
      721 tctgcttgaa actttttaaa ggtttatttt actagttcag aactatttca gcattaccac
      781 tgagggaagc acagtaggag tgacta
//
LOCUS       KCLJ01002203             513 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 246063cal ultra-conserved element locus
            uce-3402, sequence.
ACCESSION   KCLJ01002203
VERSION     KCLJ01002203.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 513)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 513)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..513
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="246063cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>513
                     /note="ultra-conserved element locus uce-3402"
BASE COUNT          167 a           96 c           93 g          157 t
ORIGIN      
        1 aaaagagatt aatcaaaaca agcaaattag tattacccat cttagatgtt ctttaatgca
       61 aagccaatag ttcttgccct ttatgcacat gctcctacag taactaatgt acagtagcca
      121 tcaacaaatt acgacttgtg acacttttgc tgctgcaata ttaagcccaa agtcctatgg
      181 agaaaatata tggtttttat taccaaattg ttcttgttta caattctaat atcctcttca
      241 ttatctactt ttccagacat tttaggcagt tctgaagacc tggggcagca ctagtcctgt
      301 cataaagaga aattaatgtt gttaaagatg gcctagctgc cctctgggac agctgaagat
      361 gtgaaaatat aaggttctgt tttaaagatg aaaatgatta aaggcacagg caccttgctc
      421 ttagtgcagc cactaaaact tttaataaaa tacttcagca ggctgcttta cttcttccac
      481 tgtaagtctt aaggagagag aggggaagga aga
//
LOCUS       KCLJ01002204             704 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 246173cal ultra-conserved element locus
            uce-4038, sequence.
ACCESSION   KCLJ01002204
VERSION     KCLJ01002204.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 704)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 704)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..704
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="246173cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>704
                     /note="ultra-conserved element locus uce-4038"
BASE COUNT          227 a          119 c          125 g          233 t
ORIGIN      
        1 tgaaaggtta atagaagtcc ataattttca gatgtatctc tttcaattag ctgctcagaa
       61 atttccttaa aaagtgtaaa ttgtttcact ccaaaactgg ggactgtgtc caatttgtgc
      121 ataaattgaa attgtctttc taatagactc tctggaaggg ggttgccttc aaagtaatga
      181 tttaaacata aactgaccct tgatgaggga gctggagttt cagtttaatg cgtttctgca
      241 attttccttt gccttcagtg ccttcaaatt ccacacaaat aattccttca taacaagtgc
      301 cttttcagaa gatgtatgct gctgacagtt aatataaaat tattgcccct gaatgcattt
      361 tcgtaattac ttcccagaga actgtctttg tgttagaaga catttcacac tttagtaaca
      421 taagtgtttg gggagaacat gagtaataat tacaggcagt ctttcagtga aaataaacct
      481 aaaaaattat gctagtgtta aagttggtta gagacagtga ggaatgtatt catcacatta
      541 tgcctgtctg tatattttcc aagtttaata acccttcagt agctaaactt ccataaagaa
      601 cagagaaact gctttctaat ttttaagcaa taatgaaaag tgacatgctt ctagagacag
      661 aataaagaaa ctcaatctga atgctcctat aggaggtttc tgct
//
LOCUS       KCLJ01002205             401 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 246285cal ultra-conserved element locus
            uce-5243, sequence.
ACCESSION   KCLJ01002205
VERSION     KCLJ01002205.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 401)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 401)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..401
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="246285cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>401
                     /note="ultra-conserved element locus uce-5243"
BASE COUNT          129 a           71 c           89 g          112 t
ORIGIN      
        1 ggggtggaaa gagagaaaat gaaatccaga tttgtaattc ctaacaggag aaattcgatc
       61 ctttccaatg tttaagtaat atttcctgta aaacatacga ggccatctgc agagctgttt
      121 ccagacacat tttgaagtgg caagggcaac tgaaagagac ctgaatggag gctggcattt
      181 cacctctggg agatggagca ttaaaggttt tgaaaagctg gttctacaat tttacaaagt
      241 attcaaccac tgcatagttc ataatttgtt taatttacct accttttata ggtatgggga
      301 ggggaaatcc gctctctaag agacagtata aaaaccaaga cagctgtcta atgtacagct
      361 atcaagaatg cttcatgatt tcagccgatt ggttacaggc c
//
LOCUS       KCLJ01002206             699 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 246397cal ultra-conserved element locus
            uce-6856, sequence.
ACCESSION   KCLJ01002206
VERSION     KCLJ01002206.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 699)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 699)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..699
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="246397cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>699
                     /note="ultra-conserved element locus uce-6856"
BASE COUNT          216 a          133 c          145 g          205 t
ORIGIN      
        1 ggtgctttgg aagcacaaca ccttagcact tgatagatca gtaatctatt ataatcagaa
       61 ataggtataa ttgtgtgtct ctggcttaac tgtcaaagga ttaagccaca tcctgatcaa
      121 tgcaagtgcc ttcctagaaa acaggcaggg aaagatttcc tgtagttagc agcaatgagg
      181 gagaggaact ttaaaaacaa ctttctattt gataactaca gaaatctagc taagtcttag
      241 ggatttagcc agggaacata ttggttccag cagactatgg taaagttaat taaggatgat
      301 taatggagca ttttccttcc aatgatatct gtgacagaac aaagctgtct gaggcttgtc
      361 aagcagaatt tgagttgaat gagtatttat gtgatcaaat ctgaagggct gcctcttgac
      421 agagcaagga ttcatcaatc aattgcgctg gcttgcagtg gtgggaaatt ggtctatcag
      481 catagctctg ctcccatccc ccattttttc attcaatcat ccctcaggct acaatgcatc
      541 tttagctttt acctctgacc accttaaggg ctatcagaga aaagtaaaag caagagctaa
      601 aacatctatt atagtggtta tttctcagct gtactcatac aattgatttc ttttaagtaa
      661 aggcccgggc actgtaaagc gatacaagcc tgttcaatg
//
LOCUS       KCLJ01002207             735 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 246510cal ultra-conserved element locus
            uce-3688, sequence.
ACCESSION   KCLJ01002207
VERSION     KCLJ01002207.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 735)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 735)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..735
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="246510cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>735
                     /note="ultra-conserved element locus uce-3688"
BASE COUNT          208 a          163 c          135 g          229 t
ORIGIN      
        1 tccatcccct gggctttgaa gaggtgtgga gtggtaacct gcacacacat gtgggtttca
       61 tagcaaaggg tttgtcaaca ggattcaagg tcaatacgta tcaacatgag acctggctaa
      121 tttactttca ttcatgcact tggagttaag cagcaaagaa ggggttaacc ataaagtatt
      181 tcaccttgaa ccttgcactc tctttatcta gcacaccata ataaaagatc aagagttcct
      241 gcttattatc ttatttttcc tccttgttcc actaggctag ggcccagact agttatggat
      301 taacactgtg atcaatagta agcttgctgt ctcgctctcg gcaggggaaa atgaactcaa
      361 aatgcagtca aactcttatt gatcaaggat ataggtctca ctttcattac ctctgtctcc
      421 tgataaccca catataatgt gatgagttgc taatctctct gcttttcaat ggacccttca
      481 cccctcctgt ctgcacagta gagcttttat ttttgcctct tctgtgtaat gcttgtagca
      541 ttaactctca ctctattacc atcatgcctg gtcaatcaag actcataaaa ggacttttaa
      601 atagaattgg gccaactgtg ttatgatttt tatctccaag caaatgagtt acccttcaat
      661 aacaaagagt gggtactgga ctacccaaac ccatctcaga agaagatgtt tatgtggatg
      721 cttgcattaa aaaca
//
LOCUS       KCLJ01002208             730 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 246622cal ultra-conserved element locus
            uce-3122, sequence.
ACCESSION   KCLJ01002208
VERSION     KCLJ01002208.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 730)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 730)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..730
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="246622cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>730
                     /note="ultra-conserved element locus uce-3122"
BASE COUNT          219 a          145 c          133 g          233 t
ORIGIN      
        1 cttaaacttt ctctttaaac taaactagtg agctgcaaac tgctaaatgc tcaataattt
       61 caatttggca gcaatagttt tccatgtagc aggcacatgc aagatgaatt agtgaatagg
      121 atcttaggag cttgtgaaaa agagctgacc tgtctgaaac tgcacatcct tttggagcac
      181 agtcccaagt cgtagtggtg tcccaaatca caggattaat gtgtctatgg acagacctct
      241 tatgcctcca gaatgaagca ctccttgcta atttctcttc aagacaccag cttaattgca
      301 ttttaaacaa atgggctgct ttgctggcca acttttaaat gagataacag caatgttcac
      361 tctccagcag tgatgagtgc cttgcagtag attcaaaact ctgttcaata acaggtttaa
      421 tctcacacca gcagatttac tgcagaataa actgccactg agctcataat tagtaaaacc
      481 ccaacctact aaatattatt ttccaaagca gcaggctatg ttttagtgga aaatttcagt
      541 ccttttcttt gtatgtttta ttgattttat gtatgatatt gggaattcat gctatgattt
      601 aagataatgg tctttatcga tcacttaagc agttgtttag ctacacagta acaaaatgat
      661 gctcccattc gtggaatatg tgatactgac agcggggaga ccacagtgct tcccttctta
      721 atgtttattt
//
LOCUS       KCLJ01002209             648 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 246733cal ultra-conserved element locus
            uce-3011, sequence.
ACCESSION   KCLJ01002209
VERSION     KCLJ01002209.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 648)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 648)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..648
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="246733cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>648
                     /note="ultra-conserved element locus uce-3011"
BASE COUNT          200 a          119 c          116 g          213 t
ORIGIN      
        1 tatttcattt tttaaatggg agcatcacct tttgaaaagc tagagtgtct cagtcatcag
       61 acgagctgtg gttgttaagg gatgcaggcc cttatccaga tattttaaag taaatatttt
      121 atctagggaa aagtatggaa ttcataattt gatggcgtaa aaggccaata atatgtgaca
      181 gcatgatctc attagaaaaa ggaattttag cccagtgtga tctgagtgac tagttccaaa
      241 atgtgcagtg aattttatag ttcgtctggc tggcagtgtt ccatgctcct gcattcccca
      301 atggtaaata tttgcaacag atttcacatt gtaacacaag ggctcctttc acagagcagg
      361 tcatgtaaca ctgcaaaaaa atcaaggcca gggcaaataa acaaaaagtc atgccaagtt
      421 caccactccc aaagattcct aagcctggct gtgcatacaa acttcacttg ctactcatca
      481 acatcagcag tttatggcca gatggttata aatttacatt ctataaaatt ttagaggatg
      541 ttattttttc cactcagttt gttaattaag ttttggtctt tttatttcct caaacataac
      601 agtgcaattt tttattaatg atacagtatc atattctttc ctgtctct
//
LOCUS       KCLJ01002210             523 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 246843cal ultra-conserved element locus
            uce-7507, sequence.
ACCESSION   KCLJ01002210
VERSION     KCLJ01002210.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 523)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 523)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..523
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="246843cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>523
                     /note="ultra-conserved element locus uce-7507"
BASE COUNT          171 a           77 c          100 g          175 t
ORIGIN      
        1 tattttagca taggcattaa ttgagcacac tggccatgca ttgattcttt cctgtcagct
       61 ttgggttatg tatgcatttt aacatttaac ttcactgcat gcaaaatcca gaaatgaaaa
      121 gtgtgcataa aaatatacag ggcattactt atttatatgt aaaaccttta ttctattttg
      181 ttattttaga ttaaatcccg tttcaattct attctctcag ggaagcacta acagtttgag
      241 ctcagcgtga aagccatcaa acacttgagc tgaaatttag attgggcaat tttgcctggt
      301 gaagtagaaa aggacatgtg gaatggcaga gaacagaatg gcttatggaa aggcagatgt
      361 tttaataact tgttgtctag tgggagcctc aaatatctaa atttaaacac tgcaatatat
      421 taaagtgcat tgctgtcggg catactcctt atgaaacaga gtaaatgtgc atatttattg
      481 ataaaacatg tattttacaa attagaatta attggaaggt gtt
//
LOCUS       KCLJ01002211             822 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 246951cal ultra-conserved element locus
            uce-6638, sequence.
ACCESSION   KCLJ01002211
VERSION     KCLJ01002211.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 822)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 822)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..822
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="246951cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>822
                     /note="ultra-conserved element locus uce-6638"
BASE COUNT          215 a          175 c          171 g          261 t
ORIGIN      
        1 gacatcgcaa atctcccatc tttgctttgt tggtctatat gcatgaataa ttttcccagt
       61 gcttgtttgt agctgagcgg gagaaagaga gaattaccgc cgcacaatct cttgttgtcg
      121 gtgatcagca ttccgatggt ctgagctggc ttacaacagt gtaaagacat cagtggcatg
      181 tgttataata tattgagcat tgtactcctg aagaacgcac gaaagaaaga acattgttct
      241 actagggagc aattcatcgg gtttttccca gagactcttg ggtcaagttt ttataggcct
      301 atttgatttt caaattcttt ttcccccttt ttcctctcag tgagccatag tgtccaaact
      361 tgtctacatt tacttcccat gttttgtgca tggtagatgt cctttaaaaa gagtatctca
      421 aataagtctt tattcttgtt ttgttggctc ttattctgtg ttttcatgaa ctctggccct
      481 ggccatggca actgcaagaa aaatgttaac attgattgac aggattaaga aagcctccat
      541 gcctatccgc atttcaaaca ctttgggaac aatggtgttt ggtgtgattg aattaatgag
      601 atatcgtgga ctgtcaaaag agcacacata ctttacataa acctgattat ctttgcatgg
      661 cagaaatgaa aaaaaggagg gaacagaggt ttggctttca ctcatacctc caaaggagcc
      721 atcaaagtgt gtgtgccctg gctcagagag tgatgtgccc gctcaactgg cctgccctcc
      781 ctttctctcc acatactgcc tggctctgct tagcatacat ca
//
LOCUS       KCLJ01002212             477 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 247063cal ultra-conserved element locus
            uce-4980, sequence.
ACCESSION   KCLJ01002212
VERSION     KCLJ01002212.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 477)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 477)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..477
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="247063cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>477
                     /note="ultra-conserved element locus uce-4980"
BASE COUNT          135 a          102 c          106 g          134 t
ORIGIN      
        1 gctgctctgt ttttaaagct gctttgaagg aatgctctcc agcggactgc cgcctgtcac
       61 tgctccctgt catgtgtccg ataattaaaa tctgactgat ttactgactg gcatcaacca
      121 tcacagctca agagttagaa gatgttcatc cttcccaagg ctaaatttac ttggtgaaaa
      181 ggggccgctt gcttccagcc tgagctgtca ttcagctgcc gtggaaacca taaagatagc
      241 taacagagcc ccagccagca gcctttagtt tattttattc taatatttat tgccacccag
      301 aaaatgaaca taatacagac aagttagtga gagcactgca ctagtgattt gtgaggctgg
      361 tgtggagtga gagcaaaaca gtcctgcagt attaaaataa aatagaacag cggtgtttcc
      421 caaaagtatg gcagggctgt agctgtgttt attttaaccc taatggggta caattta
//
LOCUS       KCLJ01002213             306 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 247171cal ultra-conserved element locus
            uce-652, sequence.
ACCESSION   KCLJ01002213
VERSION     KCLJ01002213.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 306)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 306)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..306
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="247171cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>306
                     /note="ultra-conserved element locus uce-652"
BASE COUNT          102 a           53 c           55 g           96 t
ORIGIN      
        1 tttttaactt acagattttg cagtgtttct gtcacttcaa cttcttgttc cttattaaga
       61 cttcagagat acaaaccagt agctcagtaa ttgctttctt gaatctgcct ttaataatta
      121 catttagtaa agctgtatcg aaaattagaa aggcagagac taatggaaaa ctagattttt
      181 cactgaatta gaaagcaaga caatccatat attgacaaca tttcaagttg aaacagatca
      241 ggaaaactgt tttggactgt ctgtgcaaag aggcaaacac aggcctgatg tgcagtggca
      301 tctgca
//
LOCUS       KCLJ01002214             644 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 247268cal ultra-conserved element locus
            uce-1602, sequence.
ACCESSION   KCLJ01002214
VERSION     KCLJ01002214.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 644)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 644)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..644
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="247268cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>644
                     /note="ultra-conserved element locus uce-1602"
BASE COUNT          194 a          128 c          113 g          209 t
ORIGIN      
        1 gccctgtaaa acaatgatat attctctgct tgcaagactt gcctagtggc ccattcattt
       61 ttaccgctgt tcttcaaaca ttacttcctt cgctcatgcc ccctcattta aaatccattt
      121 taatttaaag atgttccacg cagtcctagt ggtacattta ctcatcctgg ttatacatca
      181 tggagcaggg aaaagaaaat tgtttaatct agagatacgg ttcactgtgg tcaccactga
      241 acagtggagt aattaccaga tcagctctgc taaaaatgca ctcagggtgt tctgtgacct
      301 atcatcttct aatctgcata gtgaagtata gcttcataac tataaattgc tgacttaatt
      361 aaaaccagga cctttctgtc atttaattac agggagaaag gttattgctt aaatgcaatt
      421 ttccaaatgt gatttcttaa cagttattaa ctgcttcacc atcatttatt gtttcagatt
      481 tttcaatttg aaaatagtcc ctgtgacaga agtaatgact tcatgaaaaa ctcaatctag
      541 atggagctga gcagacccat ttgtttctcg taagtggagc agacagaaaa cttgaaaatg
      601 tcacaggagg atgctgtgat tgctccactt tacaggagta atta
//
LOCUS       KCLJ01002215             712 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 247380cal ultra-conserved element locus
            uce-7755, sequence.
ACCESSION   KCLJ01002215
VERSION     KCLJ01002215.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 712)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 712)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..712
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="247380cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>712
                     /note="ultra-conserved element locus uce-7755"
BASE COUNT          191 a          159 c          153 g          209 t
ORIGIN      
        1 aaaaacttaa caggcaacaa taaaaaaagg ttaaaaacaa cttttccttt tagtagtcct
       61 ctggtagtaa agatagaaca gcttccacat ttgagaaata atctgtcttg gtccttttta
      121 gtatctgctt ctgcctccac ctctatcgga tctgcttcca ccacggccac cacctctggg
      181 tgccccgcgg cttgaactac tgtaagaatc ccgaggaggt ggatagcccc tttccatgga
      241 tgggggaaga cccctgtctt gtcttccaac acgatcacgg ccacttgagt agacatcact
      301 tctgctgctt gagtaacttt ctcggcttcc atatccatct cgtgtgctgc cgtaatcatc
      361 atagcgactg cttccaccat atgatggcgg gggccctcga gcaggtggag cactacgtga
      421 gttacctgca gggtcaacgg tcaggtaata tggcaacacc ataagttata tagaacaatt
      481 tcaaatctga atttacagaa ctgctgaaat gtttactatc tgccacacta atggtatttt
      541 aagtgggggt gagtggattt gaaggaatga agacggtttg cttattcagg taggttcttt
      601 aactgggtat tccagtacag cttgttattt tagagaagaa actcatattt tccagagata
      661 gctgtcattc tgaactgtag actttgcttc tttagcttac agcttaaaaa ga
//
LOCUS       KCLJ01002216             329 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 247489cal ultra-conserved element locus
            uce-3195, sequence.
ACCESSION   KCLJ01002216
VERSION     KCLJ01002216.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 329)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 329)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..329
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="247489cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>329
                     /note="ultra-conserved element locus uce-3195"
BASE COUNT           96 a           53 c           69 g          111 t
ORIGIN      
        1 tgaaccctca ttcttccata gaaatttgct ttgctttcta cagtaccaaa ggtgggtgat
       61 ctgaagatct agtaagaatg acacatcttt tttatttaaa tattattgct ttttaggcac
      121 tgaattttgg agatatgccg aagtacttgt gggagatttg ggtacctgac aaaccatggg
      181 tggtaagata tcagatccac tgcaataaat aaaataagca tttaatgttt ttgggccctg
      241 ctgtcactga attcaatgga gtgaactagg gctcataaga agtgcagtac tgcaaatgta
      301 tgcaagtgtg tttccattct tttcagtat
//
LOCUS       KCLJ01002217             793 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 247586cal ultra-conserved element locus
            uce-7012, sequence.
ACCESSION   KCLJ01002217
VERSION     KCLJ01002217.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 793)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 793)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..793
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="247586cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>793
                     /note="ultra-conserved element locus uce-7012"
BASE COUNT          267 a          125 c          143 g          258 t
ORIGIN      
        1 agaaaaatag taaaaatatt ccctctagaa atgaagggaa atggggaacc ttgtggtgag
       61 aagctaactt gtccatgttg ttatgaatag agaatagcat gtacagtttt tcatatctga
      121 cttgcaacag aagattggaa catatagaaa ttaatgttac tgaattattt aatagtaact
      181 caaacacatg aaaaaaagaa ttaaagaaac acaagactaa aaaagcattt aaaatgaaat
      241 cagaagcttc aacaaatata tttttccatt gcagtcaaaa aagcaattat caaaattgtt
      301 cagaatatgt tgccaattac tctgctccat aactgctaac tttctcagtt cttctcttgc
      361 ctttgctggg ctctctgtca ctggaaacat cttaaaccaa tttaaagtgc tacacctgaa
      421 taaacatgtt gtaaaagtgt ttatgtattg aagtgggtca gttcaaggta tggtatttgg
      481 ctggaacttc taatttctct ttttactgca aaagggctgc cagaaggagg aagtctgagc
      541 tgaattaata catttgttac agtggaagta gaatggaaac tactttaacc acaaatcaaa
      601 ctgcctcttt catttacgcc agtgatagag tttttttaag aaatatagac tctggcgtgc
      661 agccactgtg agtttgtgtt tgaaaaggaa acctatatgc ttatttctat aatgtttact
      721 cctatgtttt caagttcttt ttgattgagt taacagcatt atacatttgt caggcagatg
      781 gtcctttgtt gcc
//
LOCUS       KCLJ01002218             682 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 247696cal ultra-conserved element locus
            uce-7145, sequence.
ACCESSION   KCLJ01002218
VERSION     KCLJ01002218.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 682)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 682)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..682
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="247696cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>682
                     /note="ultra-conserved element locus uce-7145"
BASE COUNT          206 a          125 c          136 g          215 t
ORIGIN      
        1 attcataata tacagtttat tgttgataaa gtaatggctg aatggtgggc tggcccacga
       61 gtctcatagc taaagactga tttgtaaatc gtctgaaatt tgttggcatc tgttttttgt
      121 ggaatttata cggatgggga gcagtctgag ctatcccctt tacaactcaa ctcatagata
      181 ttattgagaa ttcatattgc ttttattatt tggtaaaaat ggacctaatg cttgttggct
      241 ttaaaacacc tactagcgct gctttctctc taaaatataa gacaaggccg aagcttaaat
      301 taaaatcctc aggttcttat ctctttccca caggaaagca aatctgtgtt gaaaaccgta
      361 aaattaagag gagagcaagg atagcataat ttagcaaaaa ttcatggcac cagattctga
      421 gctatatgac tggagggata ggtcagacat taagaagata ctgcctgcta atgcaagttc
      481 cttaaggtgg tgctctggaa acaaggaaag cagaaaatgc tgcactggtt cccgtttgct
      541 tcctttcctc ttaccagcct taacaataaa ttgagttgtc catttaataa cccatctgct
      601 tccagaagtc cagaaaaagg agctgtctta tgtctgcttt gtgccagaat ttcagtagtg
      661 aaattaattt cattggcctc tt
//
LOCUS       KCLJ01002219             579 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 247808cal ultra-conserved element locus
            uce-2530, sequence.
ACCESSION   KCLJ01002219
VERSION     KCLJ01002219.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 579)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 579)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..579
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="247808cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>579
                     /note="ultra-conserved element locus uce-2530"
BASE COUNT          194 a          146 c           77 g          162 t
ORIGIN      
        1 ttcctgttta acatgagcat atcatgatca acaactgtga tgtctaatga ctcactctct
       61 attttatatg atgatccacg ccaatattaa ttatgatagg caataagcaa tgcccacata
      121 catctccctt cacttcaaac cactctgaca atcccctcca gtgcctgcat ccacaagcct
      181 ttgttcccct gcagatctcc cttaacagcc caataatctt tcctcatcct ctatagagtt
      241 ccaaaactcc cagacaccat ctggccacat tgagttgtat gtctacttaa ttgacatgca
      301 aactaaatgc aaactacaaa cagaatttaa cagcacatca ccagttttaa gacacaatcc
      361 gtcaaacatt tcagaggact atatatatcc tgcacttgca aatcattggg cataatgtct
      421 gacatccagt aaacccttta tagacattca cttaagagca aagaacacaa tgtgtctgta
      481 aaagaaatcc aggtactgaa ttatgcaaga atataaattg aaaggacaaa tttgagtccc
      541 atgacctggt gatttttaac tactgacacc caaaatgct
//
LOCUS       KCLJ01002220             567 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 247912cal ultra-conserved element locus
            uce-5225, sequence.
ACCESSION   KCLJ01002220
VERSION     KCLJ01002220.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 567)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 567)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..567
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="247912cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>567
                     /note="ultra-conserved element locus uce-5225"
BASE COUNT          164 a          105 c          124 g          174 t
ORIGIN      
        1 caggctctga gatttcaggt ctgcagagtg aggatggaac tcttccagct gataaggaaa
       61 gacttgtgtg agtaagaaag agaaggagct gttcatcaaa ctgtacagca cctccagcca
      121 ttgcagttgg ttgggggagg ctttaggggg aggaggagga gcgggagaag tattagggct
      181 gtgagccact attcatttac aaactataat taatttgatg tttagattaa tttctgatgc
      241 actctcaaag gtgcactgaa agcatttttc ctttattata atgttgattg cttattgggg
      301 agataaatct aactgtcagt tatgcactga cttaccaaaa ctttcagacc aagcaagcat
      361 gtatgcataa ggaacagctg tttgcagctc tccagttaaa gggacagctc tgtcttttcc
      421 caataactta cattacagaa aacctatata ttgtacacag ggacttctgc tttcttttgt
      481 agctcaacaa tttattagac aagaatatgt tagcagaatc tatcttctat ttatctgggt
      541 gtccactatc actgttctat ccacctc
//
LOCUS       KCLJ01002221             582 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 248016cal ultra-conserved element locus
            uce-4824, sequence.
ACCESSION   KCLJ01002221
VERSION     KCLJ01002221.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 582)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 582)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..582
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="248016cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>582
                     /note="ultra-conserved element locus uce-4824"
BASE COUNT          196 a          111 c          106 g          169 t
ORIGIN      
        1 aagaaaagcc acaccacaga tgctcaagtg ttcattaccc aaatctttgc aggaagcaat
       61 tgaatagaat tacctacaaa gagaatgtgg cattttaaca ttatacaatc atgttcctca
      121 tggcaggtga catctatctc cttgatggag actgtatctc aaaaatacat tcaccgagct
      181 gtctataaat tcaaataaac cctgcaattt aattttcaac atatccatat gtttgagaat
      241 caagctttca gcagttgagt acagtttgtg ttgatactac tgtacccagt gaataaggag
      301 gaaacaatgt agttccactg cagctatagc caggtttagc aggggtctgc agggagaaag
      361 gattcgtccc agtgttctgg gtctaattca agatccagtc aatagaattt ccaagaagtt
      421 catcctttct tgtttggtca aacgcagcct ttttcatggt ttagaggaac tatgtcatta
      481 cttagttaga aacacaaaga accaaatgtg tcattgtgca ccatggaaat gcagccaaga
      541 atcttttaag ataaaataaa acccttaatt ctttaagaaa aa
//
LOCUS       KCLJ01002222             633 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 248127cal ultra-conserved element locus
            uce-5852, sequence.
ACCESSION   KCLJ01002222
VERSION     KCLJ01002222.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 633)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 633)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..633
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="248127cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>633
                     /note="ultra-conserved element locus uce-5852"
BASE COUNT          187 a          115 c          101 g          230 t
ORIGIN      
        1 tgttttcctg atttattaat tgttgtgtgc atccaacata aaaaaaagtc acacactctt
       61 ctttcttttt aaaattttgt tccattgttt ctgttgttcc aggaagatgt aaatacattg
      121 taccctacta ttttatgttt taaaaaggtg acctatactt tccatttcaa atgcggtttc
      181 tttaatgaaa atattgtaat gtcagtccat gcaaagcaaa tgcatattaa tatgcgttta
      241 catctgtctc atattaatat tcatgcctga atccacatcc ctacacaaag ccaattttct
      301 gaccatctgt gtgatggctg gtggatgcaa tgaataaatt ttatttgtga ggggagtgat
      361 aaatcatgta tcttctgttt ttcactcaca atctctcctc ttaggtgcta aaatgttttc
      421 attgtggtta agaaaaacca aactgattaa ccccttagca catcaagtag cttcatttgt
      481 caaagtcctc aaaaatcatg gcacaatatg actgagaaag tggaactgca gttttaggag
      541 gtttaattat ttacttcttg aataattcct gtctcagaat cacgctctat agtagagacc
      601 tcgtactgtt gttgagaagt accttagtct gca
//
LOCUS       KCLJ01002223             618 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 248236cal ultra-conserved element locus
            uce-219, sequence.
ACCESSION   KCLJ01002223
VERSION     KCLJ01002223.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 618)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 618)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..618
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="248236cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>618
                     /note="ultra-conserved element locus uce-219"
BASE COUNT          192 a          107 c          131 g          188 t
ORIGIN      
        1 aaatgttgat cattatttac tttccctgct cttttagagg aaatatagct gtttccaata
       61 ctgaaatgaa catgaagtga ctgaagatgt tttgaaaact aagtaaacct gtcatgagct
      121 tgacaaggct gccaatgtaa aggcaaacag ctgtacaatg gcagcagaga ggcactgtgt
      181 tgtgtttaaa tacagtcagg cagaagccag tggataatgc tcagtaatgg gttaatcaat
      241 acttattatg gttttattgg ttcactaaag agagaacaga acctagtgag cacagagtca
      301 aaaaatcact gcatctgatc tagataacat cttctctccc ttagggattt ccctattcaa
      361 gaatccaatt taccatgcct gattgacaag gattggatcc tagggaatca cataactctt
      421 tttaggaccc aataaaatcc taatggattt gtctgaccgg tcaggagatt caagttttac
      481 taaactgagg ggctttgttg caattagcct gtattctact tgcagttgaa aagctattag
      541 gagtcattgc tttctaaaat gctggagtca tgctgggttg tgaatgccag atagagttac
      601 ctttctttgt aaaaggag
//
LOCUS       KCLJ01002224             592 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 248345cal ultra-conserved element locus
            uce-4760, sequence.
ACCESSION   KCLJ01002224
VERSION     KCLJ01002224.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 592)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 592)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..592
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="248345cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>592
                     /note="ultra-conserved element locus uce-4760"
BASE COUNT          163 a          117 c          122 g          190 t
ORIGIN      
        1 gtggttgaag caggatacct cagcctcttc ttccccacac ttggggtttg agattaggga
       61 aaaccaccac tgttccacac attataaaac ttttagcaag aggctaatga aatgcaaagc
      121 tttctataag gccaacacta gccttcctat caaatcatct gaaatattta tttgccctcc
      181 tgaataattg ataggggcat cagctctccc ggtcaattga tttattaagg gactgtttgg
      241 aattaaacag cttaaagata ttagatttag cagcgacctt gcttgttagc atattcattt
      301 acctacggga gctcccatta gatattgtta atacatgacg ttcccagtca cggcctggat
      361 ctcctcaaat tgcattaaca ctgggctgtt tagccacaga ataacaggtt tgattgagtg
      421 cttgggcttg gtgtaattag attttcctag aaaaactatt ttaatgctgt gtgcgttaaa
      481 ctagatatgt catcagcatt actgtaattg gcaaacagga gctttggaga cctggctgtg
      541 tgtgaatgtt tgtgtttatg gcttgtcctg ccattgtcat agatgccata ta
//
LOCUS       KCLJ01002225             495 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 248455cal ultra-conserved element locus
            uce-7962, sequence.
ACCESSION   KCLJ01002225
VERSION     KCLJ01002225.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 495)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 495)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..495
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="248455cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>495
                     /note="ultra-conserved element locus uce-7962"
BASE COUNT          137 a          121 c           93 g          144 t
ORIGIN      
        1 ctgggctggg aacaggtgtg tgaaaatcag cacccaggca cccgctccaa caacgttgtt
       61 ttttccttgc gtgccataaa tcagagtgct aatctttcac tgtccggcga gatgtctcac
      121 tgggagggtg ataaattgcc ctccagcccc tgacagctgc tgggaaatca ctcacagccc
      181 gagacaaacc tctaaatctg acattataga gtgttgaaag gaagaatgtc tgtttttata
      241 acctacctca gttataataa atatttaaaa tccacattaa catcctctta tagttacaat
      301 ctgccctcta tggaacagtg tccaacttag atttaattag caactgaacc tttgcagtcc
      361 aagctcctat ttaggctgaa gatccaaatc tccagtgaaa tgcttctgtt ttcttaaact
      421 acctgcactg taataaatat tcgccatgtc gccaggcagc tctgctggag acagtgctct
      481 ttttgtcttc tcaaa
//
LOCUS       KCLJ01002226             473 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 248562cal ultra-conserved element locus
            uce-3526, sequence.
ACCESSION   KCLJ01002226
VERSION     KCLJ01002226.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 473)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 473)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..473
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="248562cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>473
                     /note="ultra-conserved element locus uce-3526"
BASE COUNT          139 a           85 c           97 g          152 t
ORIGIN      
        1 tggcatttaa attcaaaagc acaccgaaga cagtttccca tttaacctgg ttgtctcttt
       61 gggaagcaga ggtgtaattc ccaggtaacg gcataaagaa aaatccttcc cttgcctgta
      121 tatttttgct tatcaacacc agttacttca ataaagacag taaaagaaga atctatgcta
      181 aataatttag aaaacaaata attttattct gtttctgatc ttcatttata gcaccagcaa
      241 caagtggtgc aggctgtgga gcgtgccaaa caagtgacca tggcagaact gaacgcaatc
      301 attggggtat gtggtctttc cattttagct ctgatagtgc ttgtaaatag cttttctttt
      361 ttgaactcat ttccatcagg tgggcaaaag ttgtgggcag tggtgaagtt cagtagcttg
      421 accttcattt ttcttgccaa gaagactaat ggggtaatta atgtgttgta tct
//
LOCUS       KCLJ01002227             475 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 248669cal ultra-conserved element locus
            uce-7211, sequence.
ACCESSION   KCLJ01002227
VERSION     KCLJ01002227.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 475)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 475)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..475
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="248669cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>475
                     /note="ultra-conserved element locus uce-7211"
BASE COUNT          111 a          119 c           96 g          149 t
ORIGIN      
        1 ctaatattgg gatctgctgt tgctattgct gctctaagag tgggtctctc tgtcttatta
       61 aatctatttt tcaagctgtc acttaagcag gtctagtgac agagtcggat gtttatgtgg
      121 ccctggacac ttgaactctg gtgttttcaa tcacaacagc accttttgcc agccggtctg
      181 aattaaaaac tccccctgac cttttacccc cggccctctt aaattcatgc tttaaaaaca
      241 gcttaatgag gggtttactg gcccaattgg aagtttttat taaaacctat tagtgagctg
      301 gagtagcctg cctgaaggaa acgattaaga gcagctcagc tcagagctgg cccttagcca
      361 tttccctaaa ctgcttccag acccacgtta accccagtgc tgcagcctgc aggaattcat
      421 atcctctgct ttaatttatg ccttgtctga ttccctgccc agttaggctt gcatt
//
LOCUS       KCLJ01002228             527 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 248778cal ultra-conserved element locus
            uce-3426, sequence.
ACCESSION   KCLJ01002228
VERSION     KCLJ01002228.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 527)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 527)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..527
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="248778cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>527
                     /note="ultra-conserved element locus uce-3426"
BASE COUNT          135 a          107 c          133 g          152 t
ORIGIN      
        1 gggatgctaa attttataat gtccctcatc ttgatccagt gagtacctga acccagaaga
       61 aaacaaagat atttttgacg attacttgga aagaggaaga ggttcaagtg cttcttgtga
      121 atctgcccgg gaacccttag cagacaggcc tgtgtccttt cctttgatga cggtaacaag
      181 ttctatgaca ttgccacttt gagttcttgc ttcattagat tgggtgactg tttatttgaa
      241 attgtaatga aatatttact ttatagagct ataaggatta gcggcgataa ttgagtgagg
      301 ctgatccgga gctttcagtg taatagggcc cccttgtttg aatacagagc gcggggagaa
      361 tggaggggcg agggagcgcg tttctgcctg tcactttccc tctacatgtt gctttttctc
      421 ccggagataa gtgggcctaa tgctgaacaa atacgggaaa tcgggagcca ctgagaatca
      481 ttcgcctctc gctttcccat ggcagcgtga tagacgcccg ctcaaaa
//
LOCUS       KCLJ01002229             540 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 248887cal ultra-conserved element locus
            uce-5265, sequence.
ACCESSION   KCLJ01002229
VERSION     KCLJ01002229.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 540)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 540)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..540
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="248887cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>540
                     /note="ultra-conserved element locus uce-5265"
BASE COUNT          143 a          142 c          117 g          138 t
ORIGIN      
        1 tcatcccact gtttcgtggt ggcaactggt ccagacacat actcccacca gttctgtacc
       61 tcacagagga aggtgaagat gccctgatgt tccttgagga gcttggcaat tgtgaggctg
      121 ctctgcttga tcccacctag tgggtcaaag aggaggtcac ggttgagggt ccccttcctc
      181 tcctctgtcc acacgtcgat ctcttcctgg tggtacgcga aggtgcagtt atccccgtac
      241 ttacagtcct gcttgttaag catatctaca aagcaacaaa cagcacacag gcagggtggc
      301 ccagtcagaa actaaactct ctctttccca ctgcccacac atggaactag agagctaaaa
      361 gaaaaaggaa aagaaagttc accttcaaga cattctagtt aatgcaaact acaatgctgc
      421 tatgggggaa actgtctcaa aacgctttca ttcagtgcct ggcctgaata atgacttatc
      481 taactccgca aatacagatt aagttctccc ataggcccag cagtttttag cttggctttt
//
LOCUS       KCLJ01002230             455 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 248993cal ultra-conserved element locus
            uce-6239, sequence.
ACCESSION   KCLJ01002230
VERSION     KCLJ01002230.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 455)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 455)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..455
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="248993cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>455
                     /note="ultra-conserved element locus uce-6239"
BASE COUNT          165 a           55 c          135 g          100 t
ORIGIN      
        1 agtaataata aaaccagacc taatgggtca ccatatgtgg agaggagttc tcttgggtct
       61 taggatatac acttagagag tgaagtaaag aaaaggaaaa aagcagtaat attggcaact
      121 gttgttaggt agtataaaca atagccagcc attggcttgg agcagaggat caagttccaa
      181 tagcactcaa tagggagcct tccttaaaaa attagaagaa gctgggttgg agctggtcca
      241 tgctgggaat ggcagaagaa gcaaaaacaa gagtaaatga atggaaatta agcagcagga
      301 aatggggatt tggcacaagg ttggaatttg aaactgcaga gaggtgtcag tgataaaggt
      361 tggatagagt ttctggccga atgcagatgt gttcattgaa taaagtacag atgtagaaac
      421 agggggggct ggtggggagg gaggaataaa gaaaa
//
LOCUS       KCLJ01002231             618 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 249098cal ultra-conserved element locus
            uce-746, sequence.
ACCESSION   KCLJ01002231
VERSION     KCLJ01002231.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 618)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 618)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..618
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="249098cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>618
                     /note="ultra-conserved element locus uce-746"
BASE COUNT          214 a           97 c           96 g          211 t
ORIGIN      
        1 taaaaggctc atattaaaca ttgtgcaact tcttttaaaa caaaatggtt taaacctact
       61 cacagtagat ataaatgctg tttaaaatat ccaaatggta tggatctgct tgagtgccac
      121 attaaatcaa aatataaaaa tggtttaaaa tagctaatga attttctgga aaaagatgtg
      181 actagttttc accttgttga gcattttttc actagtgcaa cattggaatt tttatgagaa
      241 ttttggtacg ttaatgacca cctcgctccg tgctggaagc aataaacaca aagcttttaa
      301 agactttctg acttgactaa ttgaggtcgc tttcgtcaga ggcagaggat gtgtaaccct
      361 taaaacggtc ttcatttgca aaggtaaata aatcaaataa gattttaatc tcacttaagt
      421 tatctttttt agaatgtagg aaagacttgt gaggtcacct aaattctcac tttaaaacgt
      481 ttagtttgta ttagtcatct aaaaagcctt agcttagcta gttaaatttg gacaaactat
      541 tccctattaa acaactgtaa aacctcataa ccaatagttt gtaatatatt cttttctata
      601 aattctagat tgcaaatg
//
LOCUS       KCLJ01002232             560 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 249209cal ultra-conserved element locus
            uce-3452, sequence.
ACCESSION   KCLJ01002232
VERSION     KCLJ01002232.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 560)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 560)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..560
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="249209cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>560
                     /note="ultra-conserved element locus uce-3452"
BASE COUNT          173 a           92 c           94 g          201 t
ORIGIN      
        1 gtataccttg gtaggtaaaa taaagcattt cgtattgggg gtaccatggc cctttctttt
       61 taatgtaagg ccttaaaatt caaagccatt tctgcatctt gagtcagtat aaaacatatt
      121 taaaaattca tatagttcaa atttctttgc cttgcacagg ccataaggta ctggtgtggt
      181 gggtcagttt tgacactgaa aaatgaatcc agttagagaa cctcctgaag gctgttgatg
      241 atcgctataa taaatagtgc acactttaag tcaaactttt tcattctgta ttcaaaggta
      301 atggattttt cgtaaccata gtaaccttag tgtatttctg gataaataca tgaggtatat
      361 acattctggt tttatttttg aatataaact accacattat gtattactaa taatatgaaa
      421 aataggatat aggttagcat aatgacagct caaactagtg tgcatttttc ttctgcaata
      481 aatatttatc aaaagtgtag gttcaattaa tttctccccc atctccccag ttttctggta
      541 ttcttgcagt gccatttatc
//
LOCUS       KCLJ01002233             457 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 249317cal ultra-conserved element locus
            uce-5084, sequence.
ACCESSION   KCLJ01002233
VERSION     KCLJ01002233.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 457)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 457)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..457
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="249317cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>457
                     /note="ultra-conserved element locus uce-5084"
BASE COUNT          134 a           83 c           81 g          159 t
ORIGIN      
        1 ggaatgcaaa ctgctaccca ccatcataat ggatgacgcc tttctgtcaa agttatatgt
       61 gactgaagtc caaacaacgt ggcattatgg gtaatggatg ctataattaa aatgttttac
      121 tgggtgtttt tagtaatggc tttgttctac atgaagataa aaactcccta acaaaggaat
      181 taatgtattg ctttaatagg ctgcaccctg agttaagttt taaaatttat gagttctctg
      241 cagcattgtt ctttaaacaa tggcattgtc aaatgcaacc agtgagaaga ttaaagttct
      301 cccagcagat taagtacaaa ttatctgtcc tcctgtttca gcatcatttg ttcatttatc
      361 acataacgtc tagtatttct ggtcagtgtc aatatgctct gcatccttgc agttaacaga
      421 tgtcttctct tgtcgaatga attactttat gtttcac
//
LOCUS       KCLJ01002234             428 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 249526cal ultra-conserved element locus
            uce-1155, sequence.
ACCESSION   KCLJ01002234
VERSION     KCLJ01002234.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 428)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 428)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..428
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="249526cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>428
                     /note="ultra-conserved element locus uce-1155"
BASE COUNT          151 a           65 c           79 g          133 t
ORIGIN      
        1 gggggttcaa tgaattccaa aacaaaaatt cctagggtgg ttgtactaac agcaagttgc
       61 tttaaaagga ctattttcct ctgcagggat ttcagtaaag agaccatgtt tattttttca
      121 gtggaaaatt gattgtaact aagaggatac ttggcttgaa agcggggaat tatcatatca
      181 tatgattaaa tgaaagctta ccttgttata aggtaactag acatatccca atagaattga
      241 gacaatgttt gattaagcca gattttccta ctttaaattc aaggaacaaa ttaaagaata
      301 attgagatcc ttttcagatc ttttataagc tgaatatata aagctgcagc tccaggtggc
      361 aaagcaatta gctgatgaat aaaatcaacc acactgtcat tcgtcagatg tttaaattct
      421 ataagcca
//
LOCUS       KCLJ01002235             707 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 249631cal ultra-conserved element locus
            uce-1588, sequence.
ACCESSION   KCLJ01002235
VERSION     KCLJ01002235.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 707)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 707)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..707
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="249631cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>707
                     /note="ultra-conserved element locus uce-1588"
BASE COUNT          195 a          179 c          170 g          163 t
ORIGIN      
        1 gtggctaatg gagagggatg ggtgtggggc cagggggcgg gaggtgacac cgccaggggc
       61 agggtggagc tgggggctcc ccagggaccc cgagcagccc cgcagcaccc tttggatgcc
      121 ctggcccaca cacaccctgg gacccgccag agcccagccc aggcccctgg aaacagaagg
      181 cacggaattg agatttgcag atctgataat gagccagtta atgacataaa tgatacctca
      241 agaacctcac taaaccatcc aggtcctaca atttaatctg taataaatac tcctgcatca
      301 ttgcgagatg gctgctcata atggcaaatg aaatatgctg gtatgatagg tacaataaat
      361 ctggattttc ctatggttcc ctcaggctag aacaatatgt aaccagagtg cgcactgtca
      421 ggatgagcag atctcaaagc catcataaaa tctaaatggg gactaattag gaggcccttc
      481 ccttctagag ttactatttc tattgacatt ttccatgcat gagcccctcc ataacatcat
      541 aagtcaccaa gataagaact ccctagatta tagggaaaaa gctttaatgg agaagttgaa
      601 ctcaaaggcg atgcataaat tttccttctg ataccccggc aagtctgtgt tcagtacttt
      661 ctttacaaac tttcctcccc ggtgccagct gcggctctgt ccggccc
//
LOCUS       KCLJ01002236             623 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 249740cal ultra-conserved element locus
            uce-6400, sequence.
ACCESSION   KCLJ01002236
VERSION     KCLJ01002236.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 623)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 623)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..623
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="249740cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>623
                     /note="ultra-conserved element locus uce-6400"
BASE COUNT          180 a          146 c          124 g          173 t
ORIGIN      
        1 gttcagacca gctcatctgt tgactttggc agaagccctt aatctcactg tgtgtagctg
       61 ccactggaga gctggggact cggcagagag ccgaagcagg gtgggatgca gggttggtca
      121 aggcatgaac acataggcct gcttcatttc aacagccata cactgcattt tacagccctg
      181 aaattaaatg aggacctctc atgagccact gcgctccagg cataagaaat tgtaatgtct
      241 ggcttccaga aactgtcccg tcaaaatgtg cttctgatta ggtggcttaa ttacagctgt
      301 gaaaacaatg ttgatttagg cctcaagatt ccagtgcatg tcagccgtta ttagctagcc
      361 ttggactgaa gccaccattt taaaactcta ccactaaagt cacacactgc ctgacaactt
      421 tttatttagg cagaaatgtt gccagaagca acacatttta tgcaaaatat ttttcattgc
      481 gcaaatttca aatgtgacac agttgatgga cataaaaatg ggtggacctc accaagtcca
      541 aaacctaact ttcgcccaat acattcccct cccccatttc aattaaagtt tgactgacat
      601 aatgcttaat tttaattcct tta
//
LOCUS       KCLJ01002237             589 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 249852cal ultra-conserved element locus
            uce-610, sequence.
ACCESSION   KCLJ01002237
VERSION     KCLJ01002237.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 589)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 589)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..589
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="249852cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>589
                     /note="ultra-conserved element locus uce-610"
BASE COUNT          180 a           98 c           90 g          221 t
ORIGIN      
        1 aaagcaaggt atttctgcac aaaaccactt tgtagtaaac tttcagacca ttgcacaatt
       61 tcagacagga cacgtttaac aataaatcac tcttcatact ctttgtggct ttctctactt
      121 acactttcag gggaattcca gaacattttg caattagcta aggattatat ttccttattt
      181 ttattaattt tatgtaaagt gggatttatc agtggagcat tcattgacac tgacttcaat
      241 ttattctgat gaaactgact gacatctgtg tgtgctgttc atcagtcata atttaaacca
      301 ttcttaattg cattaaatgt aaattaagac attcaatttc agccattatt tttcataaaa
      361 cactgtgaac tgaattttag tgggtcacga gatcttacat tcaaaataaa tagggtaaat
      421 ttgaaactta ccattgatgt tcatatttca ccctttgtcg gctgtatttc ttttgtagct
      481 tactagattg gaacaattaa ttttctctct gaagggaaca tgaatggcta aagatgatgt
      541 agctgagttt tttaacaaat tactttatca tttctagagc ttgcttgtt
//
LOCUS       KCLJ01002238             275 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 249962cal ultra-conserved element locus
            uce-5862, sequence.
ACCESSION   KCLJ01002238
VERSION     KCLJ01002238.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 275)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 275)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..275
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="249962cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>275
                     /note="ultra-conserved element locus uce-5862"
BASE COUNT           91 a           36 c           45 g          103 t
ORIGIN      
        1 tatattaaaa ttaacatttt ttaataacaa aaagtgatat agtccactgg agtaggacta
       61 aatttatctt atgattgtac ttgtcatggc tttgagtatt tattgagtag ttttaaaagt
      121 tcattaaact caagagatta aatattgccc tgagcagtgc tccataaaag aaaaaatata
      181 gtgctattac ttggtaaaat gttgtgctat gttcttaatt taactgttct catcttaaaa
      241 gacatttcgc tggatgtgac gttttccatg gatcc
//
LOCUS       KCLJ01002239             523 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 250061cal ultra-conserved element locus
            uce-6618, sequence.
ACCESSION   KCLJ01002239
VERSION     KCLJ01002239.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 523)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 523)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..523
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="250061cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>523
                     /note="ultra-conserved element locus uce-6618"
BASE COUNT          162 a          104 c          116 g          141 t
ORIGIN      
        1 agctcacacc ttgctcctct gaatttcctt acaggaaatc aaacgatgct ctagtgccat
       61 taataccaat cataaaattt ccagcttcca ctttagaaca tttgggagct acaaagctag
      121 aaagacaaat tagttacaac atctattcaa gctaatacaa agtccattca cttgacatag
      181 tttaaatccc ctcaaagcaa gtcaagaagt gcagggaaaa gcctgacctg cgaggcaagg
      241 gtgatgcttg gctgagactg caggaggttg gcttggcttt gctgaggtag ttgcgttaag
      301 agattctgcg cttgcaggag acctgcagag agaaaaggga gtgtttggct tgtcattaaa
      361 aacactaaat gaggtaaaac aaggctcttg ccaaatgatg gaaagttttg agatgcgagc
      421 ttctgtttca tcaatgcata gatatgttca gacttttttc agcccaaaat catttccctg
      481 aaggtgatgg aaaagtgtcc tctgcaggca ggaatcattt act
//
LOCUS       KCLJ01002240             574 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 250168cal ultra-conserved element locus
            uce-3652, sequence.
ACCESSION   KCLJ01002240
VERSION     KCLJ01002240.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 574)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 574)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..574
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="250168cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>574
                     /note="ultra-conserved element locus uce-3652"
BASE COUNT          151 a          119 c          114 g          190 t
ORIGIN      
        1 ccctcatggt tcgtttcttc ttttccttat ccttctcttc ttttccccct cttaccttct
       61 ttctttctcc tccttctggt tgattctcca ttccttcatt cctctcttct ctcatttatt
      121 tgtttagagc aaattttcaa atctataaac ctattacagc aaagagactg tgttgaggca
      181 gcctctgagc ctgcagatgt ggtgggtcct ggattccaat aacagaactt atttggcatt
      241 atctgtaatg tggaaatggt ttggcttgag gctaaaattt atcatcatta ccctaatatc
      301 atctcaagac tcagctctgg cagcagctaa agaaaacacc aaggcttaat tcagtcagtg
      361 caaggaaaga gagacagagg atggaaaata tgatttatga tggaaatcaa tgcaatcata
      421 atactttatg cttgtaaaat tgggctgttc caacagtgct cacagattgg ataggcagct
      481 ctccaccaat catggcaaga aagaatgcag tagtatgatg gtgcagctgg cacaaagggt
      541 ttggggtgtg aattggaaca ggttttgttt tgct
//
LOCUS       KCLJ01002241             696 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 250277cal ultra-conserved element locus
            uce-5410, sequence.
ACCESSION   KCLJ01002241
VERSION     KCLJ01002241.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 696)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 696)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..696
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="250277cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>696
                     /note="ultra-conserved element locus uce-5410"
BASE COUNT          207 a          143 c          145 g          201 t
ORIGIN      
        1 aagatgaatt gccatcgctt ggctgctaca ttttgtcagt ttgggcacag cagagtcaat
       61 accttcacct tgacacggaa actttgtgat ttatcagtgg cgctgtgact cagtgctacc
      121 acgacctggc gaggtgcagc cactcatggc acccagcttt ggtcacagct acttggaaaa
      181 aaataaagcg ctctctgatg atagacaaat gtgtcttgtt agcaacagcc aaaaagcgct
      241 tgacttgtac taataacaaa aaggccatgt tggtcaccat gggtctaaag acgaagcacc
      301 ctgtcactgc cttggttggg aaattagcaa ataatgttcc ttttccttga taaatgggtg
      361 acagttctct ctcaccaatc attttttaac attttgatgc atgtctatga tcccgctgga
      421 ggaacagaaa agtttactgg ccctcaattt tccgatgatg aatggaacac tctaaatgtg
      481 cgatttctgt atgaggtata gttcatttta agcaattcta gtaaatgggt gtcactgatt
      541 aggacaaata gtctacttgt gcaatagcac aaatggtatg tctcattctt ctggcctcct
      601 ttgagacaga aaagaaaggg gacagcaatg accctgataa acctggaatt gctactgttt
      661 aaaaaagagc tattatataa tatacattat ccaaca
//
LOCUS       KCLJ01002242             741 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 250388cal ultra-conserved element locus
            uce-6228, sequence.
ACCESSION   KCLJ01002242
VERSION     KCLJ01002242.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 741)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 741)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..741
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="250388cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>741
                     /note="ultra-conserved element locus uce-6228"
BASE COUNT          169 a          214 c          162 g          196 t
ORIGIN      
        1 cttctcatta cagatgtatc tttgcatcaa gggaagcggg aggaaaaatt gttctttcag
       61 ggtgacagct gagcgagggc tatattatta aaggtaccaa tcataggtgc cgagctatca
      121 tcgcacgatg aatgcacttg tcaggagccc ggtgctggga cagggctctg gctcccccgc
      181 tctcctgccg ctctcctctc ctttaatgtt ggccacctcc gctcgcctga acttggacct
      241 tcagcagcga caatttctct ggcctcgaca gcaggattaa tttctcctgc cctcggcggg
      301 gcctctgagt gcggtggaag tccagctggc ctgctgctga taagatgtac cttttgattt
      361 gttttgtctt tgattgcctt ttctgtcacc tacaatggct ggccgcctgg agacctccac
      421 atcgcctgac tgacggatct atttatctat aggccccggc ttctcctccc cctcgctccc
      481 tcctccccca aaccaccacc ttgtaccact gaagtcccag tctaatagaa gccgtgaagg
      541 ctcatccacc ataaaataca tctgccatcc tccttctctc caagataaaa gcctgtcagt
      601 gttactttcc aattccaggc agcttgatta atggtgaaaa gccactgcaa gatcgacttc
      661 tggtttttac aagcgctgtc agccagccca gggttatgcg aaacacactc ttagaaaaca
      721 aaacaaaatg agaaaaggtt g
//
LOCUS       KCLJ01002243             655 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 250496cal ultra-conserved element locus
            uce-4882, sequence.
ACCESSION   KCLJ01002243
VERSION     KCLJ01002243.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 655)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 655)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..655
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="250496cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>655
                     /note="ultra-conserved element locus uce-4882"
BASE COUNT          203 a          139 c          112 g          201 t
ORIGIN      
        1 tggcaaattg cttgatatat ttgtcaattt aaaacgaact tgtgtttaaa cacagtctgc
       61 ttatcatatt tacagaataa aaatatgacc tttaaaataa aagacctcac atctcctccc
      121 tctgtgtttt taattaaaac catgaaccaa cacatgtatc catccttcct cctgtaatag
      181 cttgggattc cactctcaaa tactatatag ataaaacgaa catttatgtg ttagcgattt
      241 gcagtgcagt aaattctcct ttccaaacct gccgtcttca ttaaaatctt atttgctttg
      301 taatctcctt tgatcgctaa agttataaga agccccctcc tcttcttttg atactatcag
      361 tgtagctttt gaccagagag cgtgatgaat taaatgtatg acagatatga caggtgagga
      421 gtgcttggag agggcttaaa cagcagggat aagacaaagc ccccatttaa gaacaaaacc
      481 cctacccgat ggctagcccg ttaatgacca accactctat ttgtcctggt ggatgaggag
      541 caagctgata ctacagacaa agctttgtta ggctgttctt caatcaggcc acacaaccaa
      601 ctaattgaaa tgcccagttt ctgatttgat atacaaacgg gtttgtaggt atact
//
LOCUS       KCLJ01002244             389 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 250609cal ultra-conserved element locus
            uce-6903, sequence.
ACCESSION   KCLJ01002244
VERSION     KCLJ01002244.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 389)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 389)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..389
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="250609cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>389
                     /note="ultra-conserved element locus uce-6903"
BASE COUNT          113 a           85 c           63 g          128 t
ORIGIN      
        1 agagtgaaca ccttggagtc accaaagctt ttggtgctta tagctaatta atagccctaa
       61 tgatattttt ccaagtccat gaatacatta tgtttgcaat ccaaaaagcg ttagccccat
      121 tcaagggtac ttcaacatct gctcatttaa gggcaattaa tcattttgat atatggttta
      181 aaattgactg cttccaaggg actttttttt tgacaagaat aacaaagcaa tttgccagga
      241 gccatcttct ggacatgtta ttagcagagc cttcatctta aagagggtaa aaaaaatcct
      301 cagatttagg tacctgcttt aaagggaacc caacaccttc tctctcctgc ttgctttcct
      361 tcctccagtt cttcatccag cttttcatt
//
LOCUS       KCLJ01002245             617 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 250714cal ultra-conserved element locus
            uce-6272, sequence.
ACCESSION   KCLJ01002245
VERSION     KCLJ01002245.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 617)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 617)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..617
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="250714cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>617
                     /note="ultra-conserved element locus uce-6272"
BASE COUNT          197 a          134 c          101 g          185 t
ORIGIN      
        1 tttcatctga tcaggatcaa agcctctccc ccctcctgat cactgggatt aaatcagcaa
       61 tgtcatttta cacttttaaa aactacactg ctaaagcaag atataaaagt gcagcaaggc
      121 tgatcatagg gaccttagaa tcccctcaag atttctctct ctctgctttt gctacagagc
      181 agctgtgcct cacacagatt caaaatatta aggcgagaaa ccacccactt agtttatttt
      241 ccatatgact ttcctgtaat tattttgtaa actgttcaca caacaatata taaaaacatc
      301 tgcaaaaaca ggtaattaat gtgtaactaa tgcatttttt atggtgtcca tgcttcgtca
      361 actgtaatta taactctttt taagcaaatg atgatgtgtt tgttgcaatg tgcaagtggt
      421 tattttagat gctctgttta ctattactgc aaacagaaaa aaactctaca gctactttgt
      481 tgcacatata agccttcatc cacacaagca ggctgctttt ccaaaggtat cctaaaatga
      541 aaattggctt tggaaaggct gaccaggcca cccgctgacc aaagtaacag taagccagga
      601 tattaggaca gcagcca
//
LOCUS       KCLJ01002246             805 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 250822cal ultra-conserved element locus
            uce-6245, sequence.
ACCESSION   KCLJ01002246
VERSION     KCLJ01002246.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 805)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 805)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..805
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="250822cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>805
                     /note="ultra-conserved element locus uce-6245"
BASE COUNT          219 a          176 c          179 g          231 t
ORIGIN      
        1 gtggataccc tttgcccttt gatcctgaag atcctgccaa cagcatggtg ccaccccttg
       61 cagtaatgga gaggcctccg gtagtggtaa atggaagaca taactatgaa acttatttgg
      121 aatacatttc taggacttct cagtctgttc cagacgtaac agatcgacca ccacactcct
      181 tgcactccat tccagcagat agtcagcttg atagcacatt cccaccacct gcccatgatg
      241 ataatgtatc aatggcttct tctggggcca cccaagctga actcatgacc ttaaccattg
      301 tgaaaggggc ccagggcttt ggcttcacta tagcagacag tcctacagga cagagggtga
      361 agcaaattct agacattcag ggatgtcctg gtttgtgtga aggtgacctc attgttgaga
      421 tcaaccagca gaatgtacag aacctgagcc atgcagaagt agtggatata cttaaagaat
      481 gtcctgttgg aagtgaaact tctttgatta tccatagagg aggtaagttt ggaaagtctg
      541 tacaattaca aaaatgtgtg taaaaggttc taaaccatat atactcacta catccttgtt
      601 tgctagattg gaaattaatt tccatgttgt gggtagggtt ctggaaaagt gtgtcttatc
      661 ctaggcacag tttgttgtac attcctttat gtgttttgag tgtcaatggt cccatctctg
      721 tatccagacc tctcacccca taatagtttg tgtggtgtct gcagcaaact cacgtagtcc
      781 caaagcagtg ctgcaagctt tagat
//
LOCUS       KCLJ01002247             759 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 250934cal ultra-conserved element locus
            uce-27, sequence.
ACCESSION   KCLJ01002247
VERSION     KCLJ01002247.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 759)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 759)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..759
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="250934cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>759
                     /note="ultra-conserved element locus uce-27"
BASE COUNT          252 a          125 c          130 g          252 t
ORIGIN      
        1 tcgggttaca tcagaggttg gaggatagca gagttccatg actaaatctt ttatttccct
       61 cttcagaaaa taattttctt agtattgttt tcataaaagc tttcaaatgc cctaaaataa
      121 tacacagatt ttattttgaa caggatttct caatatgtac tgcatctctt ggcatatcta
      181 ttatattaac tcaagcctta atgatacaat ggttaaaaac agcatacaga tgtgtataaa
      241 tgaaaaatgt aatagatttc cctcttaatg taatagaatt ggcacgaggt attggaaaca
      301 ggagtgaaag tagtcactca agcattgtgt ttgcatgtta tttaaataca agtggttgag
      361 gtataagtac ctctaagtac acctgaaaga gatggtgcct tgtaatcatt gtttcagcat
      421 ttgacagttg tttacacaac agcagcacat tctctactga tttgaataat aaacatgttt
      481 aaacaccagc tggataatag aaggataatt gaaacatagt ttaaagctct gatttacagg
      541 cattgtggca acacttttat ttgtggtaca atgctatact tctgtgcagc ctcttgaaaa
      601 aattaaatag gcattgtttc aaacaacttt gggatatatt taactcaatt aatctatcat
      661 gcatttgtgt gcctgaacaa agaacacacc atcaaaactt ccaaaagcct tatgctggtg
      721 acctcacact actgcttagt ttattataag tttgctggg
//
LOCUS       KCLJ01002248             602 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 251041cal ultra-conserved element locus
            uce-2310, sequence.
ACCESSION   KCLJ01002248
VERSION     KCLJ01002248.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 602)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 602)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..602
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="251041cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>602
                     /note="ultra-conserved element locus uce-2310"
BASE COUNT          157 a          127 c          107 g          211 t
ORIGIN      
        1 agtttgtatt tagaggctat tccttgatac tttcataagt cattttcata tttacatttc
       61 aaatgcccca tgtatgtaaa atgtccttaa aatgctctca agggaactga tgctgcccag
      121 tgcacccaca agtcgatgta atcactcctc caaatgtttt tccctcagaa gacttcttcc
      181 agaaatgctg ctctcgggtt ctgctcctgc atgagaacaa agattagtcc ttcatgctcc
      241 taaactcaat gcatgtgcat gacttaaagg cattacctac caataaatgg gagattagct
      301 gcggcttgtg catttcctga tcactgcagg ttttttcaga tggctcgttg ttatcccgtt
      361 tcctttaacg atgggacact ttaatgagtt tgccatctga catacatctg cttcctgtta
      421 aacaatacct tcattcttct ggagctgcta aactcatctt ttatcctaca agatttttaa
      481 ttggtgtcag catattcatt tacgttgttg aaaatcaata gcaaaacctt taatgcttat
      541 ttttgggaga acatggatat tatttgtgta attaggggct ggtcagtcca gcttatgttt
      601 ga
//
LOCUS       KCLJ01002249             599 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 251141cal ultra-conserved element locus
            uce-5634, sequence.
ACCESSION   KCLJ01002249
VERSION     KCLJ01002249.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 599)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 599)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..599
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="251141cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>599
                     /note="ultra-conserved element locus uce-5634"
BASE COUNT          145 a           96 c          125 g          233 t
ORIGIN      
        1 atttttctgg ttcttactat ttttcgtgtt attttgagca aagacagctt ttttttttat
       61 atagtttctc tgtttctttg ggtgtatttg gaaaggtgta acagctttac tgaaagcgat
      121 tggctttcag atcagtaggg ttgtagttcc tttcaaaatt cagaggttaa gacaaatctt
      181 tttcctgtcc ttttatttag tttagatttc tatttctttg aagcaaaatg ggcaaataga
      241 ttttagagta ttagtagaat cattatatca ctgtcgttgg tcctggggtt gccaggcctt
      301 ttctgattat cagatgcaac aaatgacgtc caattttatt gaccagtttg gcttcaacga
      361 tgagaagttt gctgatcaag atgacattgg caagtgagta taaagtcttg tgagtttctt
      421 ttttggctgg ctggtgataa gaagcattta ctgatcaatc agtcctgtct tatgtgcatt
      481 gatagaaacc tccttgagga agcagcagct tctcttctaa tctgctgttg agaacgctgt
      541 gcctgaatta taactctact ttttaaagct acggctctct gttgacccat tgtttgggt
//
LOCUS       KCLJ01002250             743 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 251245cal ultra-conserved element locus
            uce-1762, sequence.
ACCESSION   KCLJ01002250
VERSION     KCLJ01002250.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 743)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 743)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..743
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="251245cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>743
                     /note="ultra-conserved element locus uce-1762"
BASE COUNT          234 a          134 c          139 g          236 t
ORIGIN      
        1 aaattcatat ttaaatttca aatgagctaa ataaacagtt tcattcagat aaacagctga
       61 ttttattcct ctcatgttat attaatatta gtattatgga gtcttctgta cccttgcttt
      121 acttcctgac tagctgataa ttgggttggc agagtatacc tggggtcatc ttgtttggct
      181 tatctgcaca agagaaagag tggcgaatac taagggaaag cagcaaaaaa tgaaaggaag
      241 atttaatctt tgaccaattt gaaacatatc ctggagaatc catggagaaa aagataaagt
      301 gtgactatga gtaagttaac taaacacatt acagtgtgtg agagcaaatg gagttagtcc
      361 attgtacacg tttaatttcc tattagtctc tggcgtttac tactccagtc tgagttgggg
      421 catctgtaaa ttcagttaaa tacagtgcat tgtctaaaca tatcacagct ccaatcagtc
      481 acccgggctg ctgataagaa gcctcttgta ttattgaatc tacaataggg aggctctgca
      541 ggcacaaaga taacagctag gtatttcact ttaagtatga gaaaaagcag tgactcgcct
      601 ttgctgctgc agctctgaca tttattacta ctccctgatt tgttttatac tactgatgtg
      661 aatttggttt caagtgcttt gtatctcctc ttactcgtaa cttaagacct ctatctgaaa
      721 aacaagcaaa ccaaaatcaa ctt
//
LOCUS       KCLJ01002251             612 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 251354cal ultra-conserved element locus
            uce-5825, sequence.
ACCESSION   KCLJ01002251
VERSION     KCLJ01002251.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 612)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 612)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..612
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="251354cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>612
                     /note="ultra-conserved element locus uce-5825"
BASE COUNT          192 a          115 c           92 g          213 t
ORIGIN      
        1 aaaatattat aagagtatct tagctaaaga gaataacttt cagacaatga catctgcagc
       61 tccacagttt catgaaatgt ctatacttaa caaaaacatt acttcatttt catggtattt
      121 cttttgtgcc tgggagcaac cctgtaattg ttcacttcaa ttacaacatt actattttat
      181 accaaaaccc attttatctg catgccagct ttttatttgt tttaccaact atatctattt
      241 ccattactgc aaggctgatg gtttgtctca agaggaaatc aaatccatta attcagaaat
      301 ttcaagcacg gctgcctctg ccataagcag catttcttat gctaatagca aatgtgctga
      361 gactgaaaag aactgacaca gctctgtttt ttatcataac ttaagcattt atgtaaaaag
      421 gcaaatccaa tagtactagg aaactataag tgttattata tataattcac tttactgaga
      481 actgcataca gcctggtttg tgcaactgtg tgttaaatca tgctgtttgt ggttttaact
      541 cacttgacat ttgaggtctg tttttgatct tgggtacctc aatgaaaatc taccattgtt
      601 catctagcaa ca
//
LOCUS       KCLJ01002252             828 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 251463cal ultra-conserved element locus
            uce-1732, sequence.
ACCESSION   KCLJ01002252
VERSION     KCLJ01002252.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 828)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 828)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..828
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="251463cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>828
                     /note="ultra-conserved element locus uce-1732"
BASE COUNT          270 a          137 c          201 g          220 t
ORIGIN      
        1 ggatgctcct gatgcactga tctagaagag acataagcaa agtagaaaca atgacatttc
       61 gctactgtat gaattccctc tcccttcact taatcctgtt cttactgggg ccttgtgctg
      121 aaagctgata attttgatgg cccctgaata aagccggtag cttgaattcc tgccaccagc
      181 ccccggataa tgaattgggc taatgaatgc tagtaagtgg taggaatctg tgaccagctg
      241 catcaaggca ggtaatacag ctcagattta attgggagca ggtattggaa ggctgtatta
      301 ctttaattgg tgagggggtt ttataaatgg aagggacaaa gtataatgga caaattgtgc
      361 tgtacaatag cacttaagcc gggattgtat gcattcgtta atctgttgag gaatgaggca
      421 attctaaaca attttctcag tgaaaccaac tccagaaagc ttgtcccttt tgttctccct
      481 tgggaaaatg caagattgaa acagaaaata cctttaccga ggcaatcatt tgccacgtgt
      541 ggaaagcgga tacagctgta aactatgaaa gagggatctt tgtagtacaa taaaggatgg
      601 aaaaagagat aaagctgggg ataagagtgg gcctgtcact gcatccaaag aaggaataaa
      661 gtgatgacat ttacagtgac agatgagact gtaaagggaa ctcaggacaa tttagagagg
      721 gaaatttgat atttaaagaa agggctctga taattaaaag tagcattaca ttaaactgtt
      781 acgcatgtca ttagtgacag aagggaactg gcgccttttg aaaagtta
//
LOCUS       KCLJ01002253             485 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 251577cal ultra-conserved element locus
            uce-1211, sequence.
ACCESSION   KCLJ01002253
VERSION     KCLJ01002253.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 485)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 485)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..485
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="251577cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>485
                     /note="ultra-conserved element locus uce-1211"
BASE COUNT          144 a          110 c           76 g          155 t
ORIGIN      
        1 tttttatgtt tcaacctcac tccttttcct cagactccag ttcccatatt ttccttaaaa
       61 ctccaaatag tctaggtagc cacagaagtg attgttccta ccagtttctt ttcatcactt
      121 ctgcaattga ccaattgaca actgattgat ggttatcttt tcacttccac aatgaaagaa
      181 attaccatca ctatagctat gtacagtaaa tgcctccaga gtaaattaca tgattctaaa
      241 attctcctta gctcacttag taaaacatca acacaaaaag tttctttttt gcctctcttc
      301 ctgtactgca gatttggcct ttcctgtcag cttcagaaaa gaacttgaca gcttctttaa
      361 aaagaggagt ataaaagaac ttgaataagg gatggcacag ggccgggcta aggcttccat
      421 tctctgcaag tggctattct ttgcactgtt aggcatgtga gcacagataa gccacataag
      481 aatac
//
LOCUS       KCLJ01002254             810 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 251684cal ultra-conserved element locus
            uce-3982, sequence.
ACCESSION   KCLJ01002254
VERSION     KCLJ01002254.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 810)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 810)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..810
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="251684cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>810
                     /note="ultra-conserved element locus uce-3982"
BASE COUNT          265 a          178 c          159 g          208 t
ORIGIN      
        1 ccatactgtg caccacctaa gagcaaactc ataacagtat aatattttct agctttattt
       61 atttgctaca cttactttct aatggagtgt gtgcaacatc atatttaaaa catgacctta
      121 gaaacttaaa aacacatcca tttttcccaa agaatataca gctgccagag aaaaggggac
      181 attcagtaaa ctgcatgtca ctatcagcta ttgatagcca gtgatttgtt ctgaatccaa
      241 aggctaaacc aaccctcatg ctgctgtatg tcagatgcaa ttggtccaaa gtcaaagttt
      301 tacagctcag acagggcgca ctttatcctt caggctgcta cttaagatag ccatgaccct
      361 gaggagaacc agtcaacaaa acagacagac aagaggatgt gatttgtatg catccctgag
      421 cctgctcaaa tcacctctga ccttcaggtc aggctgcaaa tgacagcaga gtgcatgcac
      481 ctgatcagac agcacattct cattagaaag cctgggaaaa gggggcagct acactgtgtt
      541 tactcataga ccaaatgcaa tctacccagg aaatgagaag aaaaaagatc aatttagctc
      601 aacagaagga tgtgagcaac atgtaagtat gttatgaaat tccatatcaa actgcttatt
      661 cttataaacc cagatgggag ctctctgcct gggtgagtca ccaagaagac aggttagcaa
      721 cgggtatttg tttgctgcag aataccacgt caggagcctt taccttctaa tagagtgaga
      781 tccacatcaa aggcatttac aggcttgatt
//
LOCUS       KCLJ01002255             497 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 251797cal ultra-conserved element locus
            uce-5709, sequence.
ACCESSION   KCLJ01002255
VERSION     KCLJ01002255.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 497)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 497)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..497
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="251797cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>497
                     /note="ultra-conserved element locus uce-5709"
BASE COUNT          130 a          100 c          116 g          151 t
ORIGIN      
        1 ggctgcccct gccgtgaacc cagagagccg ctgatacagt ttggtttctt ttcttatttc
       61 cctctccttt ctccggcgct cagtcttttg tgtcagcttt cagaaatgct ctgtttgact
      121 ggcagcctgt cacagatcag ttaccaccta aagccgcttg gcagggagag gtgacggccc
      181 aggaagggat ctaagtgggt ttatcagtgc ttctttacgc ctcgtgagct ccttgacaca
      241 aaaggaaagg gtattaaaga tctaaagcga gcccaaaagc gtgaaagctc cttataggct
      301 gcgagatgtg gatgtgacta aatttttaaa tattttgagt tgatgctatt cattttgcca
      361 atagagtaga aagaattttt gttacagaaa tgagtgtatg ttccacttga gtgagatttg
      421 gaaaagggag gaagtcccta aatatgtgct tggaatatta caactaccct gtatttacaa
      481 ccatgcatct attttaa
//
LOCUS       KCLJ01002256             511 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 251905cal ultra-conserved element locus
            uce-6316, sequence.
ACCESSION   KCLJ01002256
VERSION     KCLJ01002256.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 511)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 511)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..511
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="251905cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>511
                     /note="ultra-conserved element locus uce-6316"
BASE COUNT          178 a           89 c           76 g          168 t
ORIGIN      
        1 caagctaaga accagtttga tttgaaatct tctgaaggaa tcacagtaaa caaaatctgt
       61 ttgcctaagg aagccctggt agcaatcagc cagtaacaca actgcttgtg ctaatgaacc
      121 caaagctgtt aatgtggttt cttcagttaa attgattcat gaattttgaa gagaacatta
      181 tctaatgaat tttctttgaa tagaaagcaa ttaaaaggac aaatcagtct gattaacccc
      241 aaagtcaccc tactgccaca aatggtgtac agtttgaaat tatatcataa aaaactagag
      301 cagatttgct atctctttgc cctctactaa tccatgtaaa ttaatgaaca acaaagttaa
      361 tttctttgat gacccttttc tcgtatcacc tggattatgc tgatgtttaa tttgcttaat
      421 gttataataa agactaaaca gattttttca atgaagtgat tatcattccc ttcagttaag
      481 aagtgatttt tattatttaa cacacacata a
//
LOCUS       KCLJ01002257             559 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 252014cal ultra-conserved element locus
            uce-6601, sequence.
ACCESSION   KCLJ01002257
VERSION     KCLJ01002257.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 559)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 559)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..559
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="252014cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>559
                     /note="ultra-conserved element locus uce-6601"
BASE COUNT          176 a          112 c           90 g          181 t
ORIGIN      
        1 aaataaaaag gagaatactg gcacacttaa tctttcttat acccaatcat ccagtacagt
       61 ttatcaactg ctttatgact ggcactagtg cacagattga agaattccaa gattactata
      121 tatataaatc tagcaactgc attaggcata agctccctgg ccttctaata ctaagcaaag
      181 ctgtactgac aagaaaagta aaccaaaaag acctgacaac aattattctg aacacttgct
      241 aaatgtcatc attaaagcac tctcgtgatt aaacaaagca gaagtgagga aagaagacaa
      301 gattgtgttt gcgctaacta caattagttc caaaatttta tacatgttaa atgttttgtt
      361 atctattctg ttatcaaaca aactttaaat tctgtcttcc aatttgttcc tctcaacatc
      421 aactttgctt tattcgtatg ccccatttca tttattttta agaggagtct cagctgtttg
      481 ggacctgagg ttgatttgct ttgaggcttc gtagtgctct tctcgcagct gcagatttgg
      541 caatcctgta gcttctgcc
//
LOCUS       KCLJ01002258             422 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 252121cal ultra-conserved element locus
            uce-5970, sequence.
ACCESSION   KCLJ01002258
VERSION     KCLJ01002258.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 422)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 422)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..422
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="252121cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>422
                     /note="ultra-conserved element locus uce-5970"
BASE COUNT          115 a           95 c           82 g          130 t
ORIGIN      
        1 ggcagggaac ctttgctgct atgtgaatgt tgatggcaaa cattttaatg aggctagcct
       61 tgggtttaag ttgattgtaa atcagtaaaa tgtgctgggc tttctaagct ccgagttggc
      121 aacagcttgt tgaaagtaaa tcctctcatg gaaggttttg ctaatctgaa taaattcaat
      181 ttcaaaaccc ttccttgatc taagcttgct taagctctca ccaaggccta aggaccctga
      241 gggtcaattc caataacaaa agataagaaa aatctgccct ttctcatatc tctttgcaat
      301 accctataag ctgttacctc actgcaaaaa acctttggct ttaatgaagt ctccttttga
      361 tttgttgagg atgaagttca atgtttccca ccctggtgcc tgcctctgcc acccagcccc
      421 ag
//
LOCUS       KCLJ01002259             530 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 252225cal ultra-conserved element locus
            uce-6317, sequence.
ACCESSION   KCLJ01002259
VERSION     KCLJ01002259.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 530)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 530)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..530
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="252225cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>530
                     /note="ultra-conserved element locus uce-6317"
BASE COUNT          156 a          102 c          111 g          161 t
ORIGIN      
        1 ttccacgcgg cgggtgccag cagaacccga tacggtgcga tctatagaag caaggtacaa
       61 ctggaataat gaaacccttt ttaaaggctg gttgtaacag ttctgctggg tattgtaaat
      121 gcctcaggtg cacttgatac tgctgttacg ttcctggccc tggctcctaa tttttatgga
      181 aagatggatt gaacttcaat ttaggaatat tcggtaatcc ctctcaggac atactgtaac
      241 agctggtatt tctgtgttgc agcaaatcga ttccatacag cagtcagcaa tgcctatggc
      301 tgggctccgg caaaaacttc caaagcattt taaatgaagt gagccaaaga aaatagcatc
      361 atcactgcaa aaatgtagct taatttgcac gttaggccat cccattccag caaaatatta
      421 agcattttac tggtaaggat ttcatcaggt catttatttt tcattaatat atattttgga
      481 tcagggggca ataactttat gtatataggt ttcttaaata atgagcttga
//
LOCUS       KCLJ01002260             750 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 252333cal ultra-conserved element locus
            uce-6189, sequence.
ACCESSION   KCLJ01002260
VERSION     KCLJ01002260.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 750)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 750)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..750
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="252333cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>750
                     /note="ultra-conserved element locus uce-6189"
BASE COUNT          254 a          131 c          136 g          229 t
ORIGIN      
        1 aaaacaggcc acatgactag gcagcagaga acacattgtt tccagacaaa tccccatcaa
       61 agacatatga ctggggagtc tgaagtcaaa atatcttcgt attttaaatt tccatgagca
      121 ctttcaagaa aagctgcagt tctgctaaag gatttgctgc acacttttca ttactgattg
      181 atagtaagaa gtggcattag cagtattttt cccccatcgt tcctctgaag ctaatggagt
      241 cgaggattcg ttacttgatc taatggcaat agctttccaa tagacatgca cagaatcatt
      301 gattagtttg tcctcttctt gtttgccttg gaacactgtt caatttacac caattaaaga
      361 atgcttggtt tgtgtattga agaataatta agggatggaa ttccctatag gctactaaaa
      421 atgacatctg actagaatgg tgattacagc atgaagacag cattagtatt taaatagttt
      481 gactgctata taaaatcatt acagcacctc accatgaaaa agagcattag ttaattttgc
      541 ctataacaaa attagttgta tgtatttgcc tggtcacttt aagtaaattt gacaaggcta
      601 attttaaagc aagcgatcca ggttttgtga aaggagcaga tagagcactg tttatcatct
      661 tgatagatat gtatataatc ttcaaccaaa aatacacaca aatgagtaac aagagctttg
      721 tcagagatgc tcaaatcaaa cgtaaacatt
//
LOCUS       KCLJ01002261             716 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 252443cal ultra-conserved element locus
            uce-6329, sequence.
ACCESSION   KCLJ01002261
VERSION     KCLJ01002261.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 716)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 716)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..716
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="252443cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>716
                     /note="ultra-conserved element locus uce-6329"
BASE COUNT          250 a          143 c          142 g          181 t
ORIGIN      
        1 attatgcagt gcttctccca tgtaaactgc ttcgagagaa ggcaccgaaa tccatcggag
       61 tagtatagca tcctgttgtc tagcaaccaa gtgcaccaag aataattcct gcttatattc
      121 tgagatgtat aaatttcttc atgccactgc acatgaagca catacctttt gcccctctga
      181 gcacaaatcc aaatccttca ttgtcttttt tctgcaggac cactgccttt tcttctatta
      241 tgcagtcact gtagagagaa ttccgaggat agcgaccatt attacatccc ttcatcacca
      301 ctgtagtagc tgctcctcca gtgtgcaggt tcatcatcat cacagcccgt taatcaaata
      361 atattgcagt aaccaagcat gggaaaatat agaacaaata gcagcgaggg gaagacaaag
      421 actaagctgg atggtaaaag agaacatgac aaagcaactt aaaatgaata aaaaaggcag
      481 agaggaaaaa gaaagaagaa gaaatcatgc atggtggttt gtgttctata tgaatgactg
      541 gatgaacatg tgatcatgta atctgtgggc tagctaggac tctaaaagga aaaaaagtaa
      601 gtgaactgaa cgacagtatc attaataaac tcctcaatcg tggatgtacc agatgcatct
      661 tctagtgaag ccaaaatgaa accaaccaga agaaaaatga ggcagcattt taaatt
//
LOCUS       KCLJ01002262             773 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 252550cal ultra-conserved element locus
            uce-962, sequence.
ACCESSION   KCLJ01002262
VERSION     KCLJ01002262.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 773)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 773)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..773
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="252550cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>773
                     /note="ultra-conserved element locus uce-962"
BASE COUNT          203 a          157 c          175 g          238 t
ORIGIN      
        1 gctttgtcaa gaggatcgtg atgtgatgtg gaatgaacct tttttcaaaa gggcgaacaa
       61 aagctgattg agaagtgagt ttgtttctta aatggtgttt aaataaagaa acatacagtg
      121 ctttacaggc catacaagag taattccttg caaaattcca ttataaaagc atctacgcag
      181 aaaaggaaaa catcagctta aatcagtgac aagttacaag tttgctagca ctaacagaaa
      241 ctgtattcca tgatctaggg attgtgttaa ttaatgtggc tctcatctgt tggaggtgtc
      301 gctcttcatt agcctgtatt ttacacactg ccgtgcttca tttttggaat gaggtggtga
      361 ggggataacc tagccagcca tccttgtttg atctctgtga tacatacgca atgcagaatg
      421 cctcagctct cttggttccc tgccctgtcc tgctaatccc agctgagctc attatggtgt
      481 agccttgctg ctactcctgg agccagagct gtccaagcta attactggta gcagcagagc
      541 tgcctgttaa gggtctggtg tggatctgct aacatggtcc ttggtagtga cctgcaaaaa
      601 gcacgaggga gttgctctct ttcttgctgt gcacagcctg tcctttgggt ttagtgctga
      661 tcccttcaca cagctctttc agctgtagta agtgtaaaac ttggtgaagg aaactcttac
      721 tttagaaaac atacagtttg ctgctttgat ctcataattc ataggctatt aca
//
LOCUS       KCLJ01002263             486 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 252763cal ultra-conserved element locus
            uce-6309, sequence.
ACCESSION   KCLJ01002263
VERSION     KCLJ01002263.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 486)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 486)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..486
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="252763cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>486
                     /note="ultra-conserved element locus uce-6309"
BASE COUNT          151 a           88 c          105 g          142 t
ORIGIN      
        1 tgcttatctg atttagaaga tgatggaaag gaggtattta ttttcttcca cctcccagaa
       61 ggtgatcata cttacaaaat tcgctgagat tgtccaagaa agtgtgtaaa atcctcatcc
      121 atcagagccc ctggtcaggg aatgacagtg cagtaaatat cttcagcagc tgccttttaa
      181 tgtacaagct gttttcggta ggaattttca gcactcacat aaaacacact gtcatgagtg
      241 actgcctgtg ctccaaagtc attactattg ggatgatgga acatctttca gcgaataacc
      301 tttaaatgtc atgtcaagtg tgttgaaggc attttcaagc cttgctcaag gttacatgaa
      361 tattgagtag gcctgtaaaa agtttgagat ctatgagaga aaccactcat atgctggttt
      421 ggaaaacagt cacttgatct ggaagatggg gagtgacaga aaagaaatct gtttaataca
      481 tgccaa
//
LOCUS       KCLJ01002264             496 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 252872cal ultra-conserved element locus
            uce-7167, sequence.
ACCESSION   KCLJ01002264
VERSION     KCLJ01002264.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 496)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 496)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..496
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="252872cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>496
                     /note="ultra-conserved element locus uce-7167"
BASE COUNT          167 a           84 c           91 g          154 t
ORIGIN      
        1 tttatgcttg aaaaatctat tgctcattaa tcttcccagt ctaacaaaaa attgtcctgg
       61 cctccagtca ttgttcaaca ttaaaaaaac tgacaaaggt tgattgtatt gtaattcagc
      121 attggagtaa caggttgtaa aaagggctat aagaatcaaa tgaaatatgt gtcagtctta
      181 cctttctatc tttctagact ctctgacccc agagatagaa gctgaccgca gcgggggcag
      241 aacagatgct gaaaggacaa tacaaggtag gaatttgcaa aaggctataa atctagatct
      301 tgctatatga gtttttcctc agctttagac tgctattcaa gcatgtagcc taccatctgg
      361 gccacatcaa aacaagttca aacaaggtca agttcatctt gcttgtttat aagagagaat
      421 gtgctgatag attttcttta aattaatagg tcatttttgt ttatacagag caattaaaga
      481 agaataatta atttga
//
LOCUS       KCLJ01002265             597 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 252981cal ultra-conserved element locus
            uce-4992, sequence.
ACCESSION   KCLJ01002265
VERSION     KCLJ01002265.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 597)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 597)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..597
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="252981cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>597
                     /note="ultra-conserved element locus uce-4992"
BASE COUNT          187 a          114 c          106 g          190 t
ORIGIN      
        1 actcctaaaa tatgctgagt gaggttcaga ttcttagttt gttcctcctt catgtttcat
       61 gtggtatatt tctcaaacag ggaacctgct cattctctct gtttaccagt atctgcctga
      121 taaagtagaa ctgaaaacac tgtgttgtgc tggaacgtga agaagttcag agttcaaaac
      181 aattgcttgc tacaaaaata aaggaaggcc tctcctatga aatctatgaa ctcaaaacag
      241 ggatacagaa ctagtccttg ccaataactt taacttcatt tatctatatt tggcaaaaat
      301 tgtgctgcag ctggagatga aatgctgagc taaataactg cagcgatgtg agttccaaaa
      361 cagcaattac taagctgtgc tgccttgtgt aagattttac ttttatttat tgtatttaaa
      421 gaaactctgt atctatgtac agtacaacaa gaactgcctg atcaaataat gcctgattgc
      481 aaggcatctc agctccactg tcaattcagt gtttagcaag ttcaacatga agccagacta
      541 caatgctttt tatagttcta caaaccttta tattgtctct aattgcaagg agtaact
//
LOCUS       KCLJ01002266             303 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 253087cal ultra-conserved element locus
            uce-4779, sequence.
ACCESSION   KCLJ01002266
VERSION     KCLJ01002266.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 303)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 303)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..303
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="253087cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>303
                     /note="ultra-conserved element locus uce-4779"
BASE COUNT          103 a           57 c           48 g           95 t
ORIGIN      
        1 tttgtgaaac actaagatga ccaccccagc actttacaaa aactgcaaac ttagttttcc
       61 attaacattt tctattttgg catcttaaaa agagtggaag ttgatttcag cagaacatcc
      121 tgtggggaaa ttagttcatt ttgctaaagt atcttaataa ttacagtgac atcaaggtta
      181 attgcttaat ctgtattgcc atagtgcagt cctgtagaaa tcccaacaca atctgttcta
      241 taattagtgc cagaataccc atatatagaa caaacagcgg ccctctgata tgattaataa
      301 atg
//
LOCUS       KCLJ01002267             782 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 253193cal ultra-conserved element locus
            uce-3328, sequence.
ACCESSION   KCLJ01002267
VERSION     KCLJ01002267.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 782)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 782)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..782
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="253193cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>782
                     /note="ultra-conserved element locus uce-3328"
BASE COUNT          270 a          119 c          172 g          221 t
ORIGIN      
        1 gaagctgagt caacaaaact catcgcattc aaaatatact gccgtgtggg tgttttctcc
       61 tgaaatgtta agaactgaaa agctagtgct tttatccaac atgccatcca gtcatctgaa
      121 caattacttg cttaaagcaa atgacatcta gatactggag agagataaag ttaaaagtca
      181 attcattaaa atagctttct cctcaataaa tgatttggtt tttgaagtaa attgaacata
      241 aatggtagga aggaagaaga aaaatgtgaa attttatcat accattttaa gtttgattat
      301 gtcacagaga aagcaaatgg caacagagta taaaggaatc taatccataa aggaagagaa
      361 aaaggttaaa gaagtcaaca gtaattaaat ggtgattgaa gctgaaagaa aattgatctg
      421 tgttagctga aggccattct tgccttttgg gatgttatgc atcagtgaag aggggaaaga
      481 aaggtttttc ttgttttgat atggaaatat atgtcacatc ttcttagcct atggtgctgt
      541 gactcaaaac tgcactgagt ttctggtaca ctgattccag tgtcctaccc atgcttgtgg
      601 gtattgtgca aagataagat gctctaacaa agcttggcaa ggtcaaaagg catgggagct
      661 tcagcagttt gcatgtggtt ttgtcctggg gcaaaaaata aaagcagcct gaagcaaatg
      721 aatctaaata ggggtagcac tgacacatcc atggaaaagc tgtgcaatat ccatgacttg
      781 gg
//
LOCUS       KCLJ01002268             850 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 253303cal ultra-conserved element locus
            uce-318, sequence.
ACCESSION   KCLJ01002268
VERSION     KCLJ01002268.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 850)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 850)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..850
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="253303cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>850
                     /note="ultra-conserved element locus uce-318"
BASE COUNT          272 a          152 c          168 g          258 t
ORIGIN      
        1 tagttccagt tagatttaag aggcaaggca gaggtaaaag tcagtgtagc aatgaggtgc
       61 attaatctac ggtgtcagtc tctcttcgtg ttgctttttt attcctacag cttgatagat
      121 aattcgttta tatgcaatag gaaaaattta ctttgcttcg tgcagcacat ttataaatgc
      181 atcataaaga aatagttttt aaaaaggtta ttgcggcttt gaaaaaatat cctggacttg
      241 gctttctcct tttgatacca ttttctctgt gatgtaactg agtgattttg cagcagaaag
      301 ctccaaaaat taaacctgaa ctttccaaat agcttcctaa taaccgttgc ccaaatcaat
      361 ggggctccat gaatattttg acacagttta aatgggtttg tatcctcacc attgagatct
      421 ggtgatttag cctgtcaggt tgcaaatgtg gaaatatcac ctctcactga gcaaagtcca
      481 atatctcatt agaaatgaaa atagaagaga agggaagcac aaatgctgtc agtggcagtg
      541 aggaaagaaa ttaaacctcc ggaggcctgt atatcttata caaaagatta tgcactgcca
      601 ggctgtataa atcatgccaa ggctctgggg ctgcaatggg ctagaaaata aaaaaccata
      661 aaagtgtcat attgaaatac agtcactgag aattctttta tgatgagtct aaattcgcct
      721 gacattctcg caaattcagg ggcctgcttg gattgtttat atccagactt ttgctgtcag
      781 tcacgaagtc ccagtttcca cagcaaatta ttctaaacag ggcttattat caaggcataa
      841 aaaagttaaa
//
LOCUS       KCLJ01002269             485 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 253415cal ultra-conserved element locus
            uce-7983, sequence.
ACCESSION   KCLJ01002269
VERSION     KCLJ01002269.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 485)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 485)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..485
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="253415cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>485
                     /note="ultra-conserved element locus uce-7983"
BASE COUNT          149 a          106 c          100 g          130 t
ORIGIN      
        1 ttagtaatat catttctctc atagtttatt acagggaagt aacgggcttg cattctgaag
       61 cctgtctcca cccattgcat tcctggtgat ttttcaattg caaactccaa ggcccagtta
      121 tttcattaat tcagcaccca agtagtgagg cttttctctc acatctttca gtctcctttt
      181 agcaaattat cccatgacgg aggatttatt cagtcaaaga cctcggactt tgagaggcaa
      241 caaaagaatc aagagacttt ctggtccacc tgcctggcga atgatgaggc agggtaaagc
      301 ctcccctaga gaaaccaatc aaaccattgt gtggcacagt cagacctttt caactgtcaa
      361 gccaggagag caggaaaaga gatgaaagaa ctcaggatga agctaccatt tacagaacca
      421 tgtgggaatg gtctccgaag atttaataat tgggatggaa ctcaactttc tgaaaactga
      481 aagaa
//
LOCUS       KCLJ01002270             674 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 253630cal ultra-conserved element locus
            uce-5446, sequence.
ACCESSION   KCLJ01002270
VERSION     KCLJ01002270.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 674)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 674)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..674
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="253630cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>674
                     /note="ultra-conserved element locus uce-5446"
BASE COUNT          219 a          101 c          122 g          232 t
ORIGIN      
        1 gtagccttgc agtgactctt tttaatataa tgctttccta atgaacattt taaaccaaaa
       61 tgaaatttaa agtttcattg agggacagcc atatacttaa tacacttggt ctggctgaga
      121 tgggtaataa taatttttaa acccataagt ggttgaaatg tcaagtttat ggctaatatg
      181 gactgtaaga gttttctgtc aagtgttaat gataaaccca ctgcctgtaa aaactacaaa
      241 aggacagtgc ctctttaaca gggactactg tttgtgctcc atggagcttt gcagtattag
      301 taaagcagca tgaaagagtt gattttcatt ttatgttgtg cttgtgaggc attaacatga
      361 tgttctaaca cttgtaaatg aatacagctc ttgcctaatc tgtcatttta atgccttata
      421 gattttattt cactctgtgt tgtaccagat tctcaataat aataatcaac tgctttgttg
      481 ttctcttgca gaaattaaat ttctgtagtg agtgtgcaac taataaaaga tgttgcttga
      541 ggaaacaaaa aataaatatg atgaatcata aaagttgtat gtagggggtt gctcatatat
      601 gaaagacaat tactgaagca gtggtaaatt catctgattc tcatattgtc aacatcttaa
      661 taactctcac aaag
//
LOCUS       KCLJ01002271             771 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 253741cal ultra-conserved element locus
            uce-6923, sequence.
ACCESSION   KCLJ01002271
VERSION     KCLJ01002271.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 771)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 771)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..771
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="253741cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>771
                     /note="ultra-conserved element locus uce-6923"
BASE COUNT          237 a          161 c          140 g          233 t
ORIGIN      
        1 agagtttctg ttttctttga catgtcttgt gaaacacccc agctgcagta ttatgacatt
       61 ttctgcatag aagtgtgtgt tatttgcttc acctgaggct gcttctgcaa aaccacagag
      121 tctgtctgca taaagcagct agagaggggc tgtggtagtt ttatttttac ctgcttaaaa
      181 gaagaacaaa gaaacgactc gtcgttacca gtgatcaata aagagcagac agacataagt
      241 tttcttaatg gtttcttttt taaagatgtg tatgatgccg tatgcgaggt aacaacttct
      301 ttaggaacat cacagcaaga gacactggtt catgtaaggt tcacctatta cactgccctc
      361 cagccagctg gaggctaacc agtctgataa ccctacacca ccacagcaca ggcccaatga
      421 tttttacatc aagcagcctg atgtactgct ctgccatcta ccaatccctt ttcaatattg
      481 atccattcct aaatgagcct tccctgcttt gtaccatgag caataattaa aaaagcagca
      541 cattgatttt aactaatatt atgaaggatc tggatgtgca catgcttaca aaatagcgga
      601 ctttacccat cattcatagc acaacaaagg atcctgatta aagtttggac acagggaaag
      661 agaaatgtgt ctgcaattga acgtgtcaaa acttatacct attctgtttt attataaatc
      721 ttgtttcagc accaagggac ctagtcttat aattttcatt aaaataaatt a
//
LOCUS       KCLJ01002272             558 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 253851cal ultra-conserved element locus
            uce-424, sequence.
ACCESSION   KCLJ01002272
VERSION     KCLJ01002272.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 558)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 558)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..558
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="253851cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>558
                     /note="ultra-conserved element locus uce-424"
BASE COUNT          161 a          110 c          117 g          170 t
ORIGIN      
        1 gtaatgcttt ttctttatag gtagccagaa tgttttgaga gagtaactaa gcacaggcct
       61 ggagattatg aaatttgctt aagtgttaat gggttgattg ctgagttaca gtctgccgtc
      121 tttactggaa attgattgac tagtgctgca ggtcttcaca cttgacgctc ggatttgact
      181 cgaaaattct gccaagtctt ttactctgaa atttatctta attagatctg aaagacctgc
      241 cacagcagaa tagtcacacc gattaaaatg aaaaacagga gaaattactg atcaaattaa
      301 tcataatgtc gggttacagc tgtaggtctg atgtaatttg ccactccagt gagttacatc
      361 ggcccaggca gaggaaagag agctggtttt acgctgatcc gtaacaccag gcagcttcag
      421 gcagcccatc aggatgcttg ttcctttcat tctcttggct tattctgacc tcagagatgc
      481 aactagaaac aatttaggca aaagatgagc tttccaatcc ttcaccagcc ttctactttt
      541 gtttgaagta attaacaa
//
LOCUS       KCLJ01002273             653 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 254069cal ultra-conserved element locus
            uce-1976, sequence.
ACCESSION   KCLJ01002273
VERSION     KCLJ01002273.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 653)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 653)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..653
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="254069cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>653
                     /note="ultra-conserved element locus uce-1976"
BASE COUNT          218 a          121 c          127 g          187 t
ORIGIN      
        1 ggaatgtgta cctttcatgg gattattaaa ccactgcagc atttctattt aagatgaaat
       61 cttttaaaat catgaaaatc cacaaaggtt ctaaattggt tttctcccac aatatccctc
      121 tgcaaataaa tcaaaggctt aagccaatcc tgtgctcgac cactacagat tgtaaagaac
      181 ccttaaagct gggcacctgc agaacataac ccaacttctc acctgctgtg ctgtgttcat
      241 ggcaccctgc ctggaggtaa gctctgcggg gattggtagg ctccatgcct cctcaatact
      301 aggaagtaat ttagttttat tctgtagact accttgtgga aggttacaca actgagccta
      361 ggaaaaatta tgtaaaaagc aaatttaaca caagcctact ttagtaagag caagtccatg
      421 aaatcttcct aaatgctgta gctaattaaa gagaggacag atttaaaatt ttggggttta
      481 gaaaggtaaa gagggtaacc agaatataaa cctttgtgag aatcagaaca aagatgagct
      541 ctggattcag aggtctcata attccttttt tctgaaattg caaacagagt gaaagatagt
      601 gtggtgtgta ttctcactat atgttatgag aacttaaatg tagacaaata caa
//
LOCUS       KCLJ01002274             470 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 254176cal ultra-conserved element locus
            uce-4511, sequence.
ACCESSION   KCLJ01002274
VERSION     KCLJ01002274.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 470)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 470)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..470
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="254176cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>470
                     /note="ultra-conserved element locus uce-4511"
BASE COUNT          130 a          111 c          102 g          127 t
ORIGIN      
        1 ctcctttgga aaggaagctc gaagggttta cttctcttgc agccattact ttattttaac
       61 tatttgtttt ctttctccct aatgggaatt aacacagcga tcccgagcag ccctgcagag
      121 gtacctgttc tactgcaacc gctacatgaa ccacatgcag agcctgcgct tcgagcacaa
      181 gctctacgct caggtgaagc agaagatgga ggagatgcag cagcacaaca tgtcatggat
      241 cgaggtgcag ttcctgaaga aagcagtcga cgtcctctgc cagtgtcgtg ccacactcat
      301 gtacacttac gtctttgcct tctacctcaa aaagaataat cagtccatta tctttgaggt
      361 aggaggtcag gaattcaaat tgtaaaactg aggaaataga tttaatgcac ttttacccaa
      421 gtattctgtt gtgtaaaagt tagaggttca cagaatcaca tggctgcccc
//
LOCUS       KCLJ01002275             532 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 254283cal ultra-conserved element locus
            uce-3333, sequence.
ACCESSION   KCLJ01002275
VERSION     KCLJ01002275.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 532)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 532)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..532
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="254283cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>532
                     /note="ultra-conserved element locus uce-3333"
BASE COUNT          142 a           88 c          115 g          187 t
ORIGIN      
        1 tttgtgttat ttatgttcat aaattggagt taaaaactta caaacatgta ttttcttatt
       61 tccatatact gtagtgtgtc tctagacttg tctttacact agcagctttt gtagtagaca
      121 ttacagtatt cattttatat atgtcagatc ctcaagggcc atggcttttg ccagatgaag
      181 cacttttgat tttgaggctg atgaaacata gtgctattat tgatctgtgc atgacacagc
      241 cagtctctct gctggcagag tgtagcaaca tttatccagg aatttgtgaa atgtcactcg
      301 gatcatgttc gtaaggtaaa ctgtgcaaaa tccaggattc aagaggagaa tccatgagga
      361 attggacgtg actttcttat tccttcatcc tatcttctag gtcagccaag tggtatttgt
      421 ttgtctgtgt tttgtattag gtgttgaaga aagtatgatt atcactggga acaccctgtt
      481 ttctcagggt tgcttgggag aagaaagtga tccaagcact gcaagtgtgt aa
//
LOCUS       KCLJ01002276             796 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 254394cal ultra-conserved element locus
            uce-5286, sequence.
ACCESSION   KCLJ01002276
VERSION     KCLJ01002276.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 796)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 796)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..796
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="254394cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>796
                     /note="ultra-conserved element locus uce-5286"
BASE COUNT          273 a          142 c          175 g          206 t
ORIGIN      
        1 caactgcaaa atagcacaag gctttggaaa ggtagatcag ccttatacag aggcacaggc
       61 ataaaattga accaagggac aagctctgca ttaaacttaa ttctccttga ggataatttg
      121 gaatgaggtg aatcattaac tgtgatgcat ttgttgggaa aatgtttcta atgcctgtgt
      181 atttctaaga taaatagcaa tgatttgtat ttgttcctag gctcctacat tatattgatt
      241 tgattggtta gttgaaattt ttaatgagag gacttgagaa gacttaagaa accaagacga
      301 aacagacaaa tactagttct ctataagctt gaacacacat caaaaccagc accagctgcc
      361 atatttgtac ctactttgta gggctgcagg tatgcaaggc cttcaaatga ggcttccagg
      421 tagcaatgga aactgatttc tcatcagcag cataactacg ccatacacac tacgtgcagg
      481 atatatggta aaaacaaggc aagagggaat aggggatgaa acaaaaaatt gaaaagcaga
      541 ttagtaaccg atacaagttg tatctttctc ttatcattca tagcactgat acatgcctga
      601 ggggaggaag aatactttca taatatcgcc aggtggctgc catgtttgtt cggctggcgt
      661 cggtagaata aaaccgccag gaagcctggt atggggaaac aatagaaaag cacaaaggaa
      721 ccaagaaaat gaagtgacaa tgccaccact tttactcaga ccagaatgtg cttggttagg
      781 ctgattcagg aaatac
//
LOCUS       KCLJ01002277             536 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 254507cal ultra-conserved element locus
            uce-6464, sequence.
ACCESSION   KCLJ01002277
VERSION     KCLJ01002277.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 536)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 536)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..536
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="254507cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>536
                     /note="ultra-conserved element locus uce-6464"
BASE COUNT          137 a          149 c          136 g          114 t
ORIGIN      
        1 agcaggtgag agcagcaggg gacacacaca tcgtacagac agcagcgcag ggagataaat
       61 ggagcgaatg cctcgggatg ctgccgggtc tgctccagca tcatcccgtg gcacacaaat
      121 ccctgccctc agcctcggca tgacctgctg gggtggctcc tgcggcccaa ttttcctcat
      181 tacctgcttc tcccaaagat aagaggctct tgtgcaaagc cgctaattca gtcccgaaaa
      241 taagtctaga tgtgaaaggg attttgacaa gatgcacgta ggggttgggc gactagtctt
      301 aattaggcca tctttgttta cattcgatgt ttatcagcta attggcatgg caaggtgtga
      361 gtcacacagc ccctctggcg tgaaatcagt tcgcaggaga aaaactggga gaacaaatga
      421 tcccaattat aagaaaaccc actgtaccat cccacggact acggagcctc ccacccgcgt
      481 ccttgctcct cccagcccgg ttcccagccg caggagcaaa ggtgatgctt cacact
//
LOCUS       KCLJ01002278             683 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 254615cal ultra-conserved element locus
            uce-4915, sequence.
ACCESSION   KCLJ01002278
VERSION     KCLJ01002278.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 683)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 683)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..683
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="254615cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>683
                     /note="ultra-conserved element locus uce-4915"
BASE COUNT          199 a          146 c          145 g          193 t
ORIGIN      
        1 tcccatcaga agacacttct cagctatcag atttgagcct attagagctg ctgatacaag
       61 aggaaccccc taagaaatcc tgaagatgga actggacagc acgggagcaa taagcttgta
      121 aacatgatcc tgttcttacc agggtttcct aattgctcac accttcttaa ggagcacggc
      181 tcaaacaaac aaacaagtta caacaactga tcttgacatc caagatgtca gaaccatttt
      241 aaaccccttt attgcagaat gatgtctttt gtgcttagag gcatgcttgc tattcataga
      301 tccactgctc agctgttcca gtttttagtt ctgcataaat gcccactcat tatgtccaga
      361 gggttttgcc tgtagctttg tgtttgtagc cttgaggcaa atgtcttgat ggcttaggga
      421 actcggaatg accaaataac atcggatttt ccacagcaac gaagccatta tgggacagca
      481 tttctatgta acagcaccct tcagtgtgca gtcattataa ctaaggattt aaccgggctc
      541 tggggacaca aaatcacttt gaagccagtg aaatcttaag cattcggttt ctgaaatgct
      601 tgagtcaggc agctttgtca gatacagtaa aaccaagtga aggggaagga gtttatctta
      661 agaatgtgtt tggacctgtg cat
//
LOCUS       KCLJ01002279             512 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 254725cal ultra-conserved element locus
            uce-4982, sequence.
ACCESSION   KCLJ01002279
VERSION     KCLJ01002279.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 512)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 512)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..512
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="254725cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>512
                     /note="ultra-conserved element locus uce-4982"
BASE COUNT          138 a           97 c           98 g          179 t
ORIGIN      
        1 acatcttaaa aacatatggg cctcattctg ttcctagtac tgttcagggt ataaccttta
       61 accaagactg gtagcattgt tgagatctct gaattcttat taaaaagctg aaggcaacat
      121 attattacct cagatgtcaa atctgaatca aagcttttca gctttagttt ttagtgtgga
      181 agctttcaga aatgaagcag ctaagcaaat gttttggatg taactgttct ttgaaatatt
      241 tctgtgttcc tgtgatagtg ttgtgttgtt aatgaacctt gtgtcttatt tcagagagat
      301 tccccctcta catccagaca gtcccccgct aatggtcata gcagcactaa caattctgtt
      361 tcggtaagat ttccagttcc acacagagaa agtgtgaaag ttttgttggt gctcatctgc
      421 cattactgtt atacttatcg tgtggtcagt ggaaaattct gtcctgctga gagaacccag
      481 gttattgcat atgtaactcc ccattttttt ta
//
LOCUS       KCLJ01002280            1043 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 254833cal ultra-conserved element locus
            uce-1131, sequence.
ACCESSION   KCLJ01002280
VERSION     KCLJ01002280.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 1043)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1043)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1043
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="254833cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>1043
                     /note="ultra-conserved element locus uce-1131"
BASE COUNT          319 a          175 c          178 g          371 t
ORIGIN      
        1 tatagccata gtttcctttg tgatcctctc ttttaagctg gaaatttata atggtgaatc
       61 ttaaaactac tggtcattag gtagcatgtt gcagtttggg aaatattttg gtttgttttt
      121 aagcttaacg actgtccttt ctgttttccc atgagattaa ggtcgtattt tttatgcatg
      181 ttgaaaaata ttcacttatc agtatgggtg caactgtaaa caagtgataa agtgacaaca
      241 tttacaacag caaaactgac agcatttgct ttaattttct gccatttttg taattatatc
      301 aatcaagacc aaaactaaaa tgatatttta gcatgctgta agaaatgagg aattcagatc
      361 ttaaaagacc attacaatta gctttgaaac attcaccatt ttaacataat tgtttcatat
      421 agcttatacg tcttcattta caggcaaata ttctgttgat cttttataaa caaagtagca
      481 cccatctgct tcttgagaca ctcctggcgc ctattcattg caaaaataat acatgtccta
      541 atgacttcca catattttga aatctccctt ttgaaattgg tcttggcaga ttatttgcag
      601 gtacttgagt tgcatctgtt tgcaattttg caaatgcgga agactttaat gttgagcact
      661 gcaagagggc tattttaatc ctcagataac ataggctgtc atcaaaagcc acatttatct
      721 tttcgaaggt ggggcaaatg tttaatgtta aaagacagta aaaggtcaag gtcaaggctg
      781 aggtctgaat attttccttt cataaaattg tgtcttttgt catttacttc ttgcattttt
      841 ttcatttaag tttcagctta gcttcccatt gccaagagga tgttttgctg ataaaaatga
      901 aagatcagga agagagtaaa tctgaaataa ttgtgaactt cgctctgttg tacttattat
      961 taccatgtgg ttagcagctg accaacttaa gccgttttta tttacactac aaaactgagc
     1021 agcattgtcc tagcaaagta caa
//
LOCUS       KCLJ01002281             735 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 254941cal ultra-conserved element locus
            uce-5391, sequence.
ACCESSION   KCLJ01002281
VERSION     KCLJ01002281.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 735)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 735)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..735
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="254941cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>735
                     /note="ultra-conserved element locus uce-5391"
BASE COUNT          230 a          136 c          139 g          230 t
ORIGIN      
        1 agtgtattga ggagaagctc tggtctgggg aagggaaaga aaaaggaaat tcaccctgtt
       61 ttcatctcct gaaataaatg ccatgcctgt gaatctatgc aactccagtc tttactgtgc
      121 aattgaatgg gaagtctcct gggtgaagag ctatccggtg aatccctcgc agcactgata
      181 attatgccat tctgactgct tacttaatct atttgaatcc agaggtgagt taagccactt
      241 cctgaccatt aaagtaaact acatgggtaa atactgctgt cactaagggg tgtgatgaag
      301 cttaactaca ccaacatctt aacctcagct cagtgcaacc ctagctattc catcacagtt
      361 cataaatgcg attgcaggtc catcttttga ttcagcaatt taataacttc gagtgctgtc
      421 agtactgctt tgaaaaatgg ctcctataaa atgtaacagc ctcaatcaga ttgtaaaaga
      481 ttcacccact gaagattctt ccatttcaac tataatgaat taatgttgag ctgtgtagaa
      541 gttcaagtgt catttaaact aatgtgaatc tactgtaact ttaaatttta actggactat
      601 gaccaagaat ttactgggaa catcaacttc aattttagtg atttttcatg gtaaatatga
      661 attgcagatt ttactggttc ttttgtttca acaaagtagg gaagatattt agaaaacaac
      721 agattttgag gctta
//
LOCUS       KCLJ01002282             372 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 255050cal ultra-conserved element locus
            uce-3741, sequence.
ACCESSION   KCLJ01002282
VERSION     KCLJ01002282.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 372)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 372)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..372
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="255050cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>372
                     /note="ultra-conserved element locus uce-3741"
BASE COUNT          126 a           70 c           72 g          104 t
ORIGIN      
        1 caaagacaca tgaatccttt tagtgattca tcaaatctat ctcatcacgt tgagttacac
       61 ttgcaaaata tataaggaaa aatataggat tacttcatca ccatagtact gcagcctgac
      121 agctgcctgc aaatattttc accatgatta cccttactaa aagtaaacca ctgggtaaag
      181 atagctcaaa cgtgacaagg ctcaaatagg atgcaaccga ctctatcctg aatacttttg
      241 gctacatatg ggagaggttt gggattatga ttgtttccag aactttaagc ccaagcagga
      301 tgcagaattt tacaagactg gctttgagag ttagtgaggt agaaattaat caactttgtc
      361 agggaatgag ac
//
LOCUS       KCLJ01002283             702 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 255155cal ultra-conserved element locus
            uce-4776, sequence.
ACCESSION   KCLJ01002283
VERSION     KCLJ01002283.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 702)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 702)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..702
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="255155cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>702
                     /note="ultra-conserved element locus uce-4776"
BASE COUNT          208 a          130 c          124 g          240 t
ORIGIN      
        1 gtcatatcga tctttttagc actaaaatat gagccacttt actccactcc ccgatgctgt
       61 gatgtgaaaa ataataactg ggatccaaat taaaaatatt gatctctgga aggtgttgaa
      121 agtaaataaa caccttccga agttttcggg tcagccaaga aatggtattc agcaataaat
      181 gtgtcggcat gtcagaatcc agggttcttg atctgttttt cctttcaaat tgatttttca
      241 ttacttactt cctaaaagtg ttggaatttg gtcctctacc gttaaatctc agtgtttggg
      301 caaattattt ctttggggct tatgaggtgc tcctaatcca ctcggtcatt gattgattga
      361 tttttgactc aataaacttg cattaccctt gctttattta aggcttccat cataattttt
      421 tgtacattta ggcttgactt ttttatttcc ttctaacaga tgagctgaca ttggtctatc
      481 aaacatgtgg gaaaacaatt gccacaaggt taattttatt gctagctcca tgcattttaa
      541 gtaggtgcca ggtattttcc actccaggct gataaattgc agttgaacca ctaaagcata
      601 agaatgaaca gaagcactgt agcaacaaca atagaaaccc catagaaatg catcacagag
      661 cataagcatt aaatggatta tttttgcttc attggtttaa ct
//
LOCUS       KCLJ01002284             490 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 255265cal ultra-conserved element locus
            uce-6103, sequence.
ACCESSION   KCLJ01002284
VERSION     KCLJ01002284.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 490)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 490)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..490
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="255265cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>490
                     /note="ultra-conserved element locus uce-6103"
BASE COUNT          148 a          107 c          107 g          128 t
ORIGIN      
        1 ttatggagcc ctggagtcct ccaggttctc aggatgaact tggagggtgg agtcatggcc
       61 tgaattgtcc ctcataataa ttattgcatt acaaggaaca attaatggtg tagattagtc
      121 taacttcatc aattttatgg ccattttatt gctctgcagc tgtgagaggc agagcccgcc
      181 tcctccatcc ccgtgtgtaa agggttaaat gagatgagtg acagcctttc tgcatgattt
      241 acaacttgga gccctgtagt gaaaccagcg cttgatggat gatcctgaaa gacggagact
      301 aaccataaat catgtctttg aatcattgac aaagataaag gagagaaaga aaaagcactg
      361 gcattgacat tcattctccc aataatgtac attgactagt tacaatacag agccttaatt
      421 aaaaaagcga actccgcctc gtgcaaatca caaacacaag ttccagccgc atcgaggctc
      481 acctcgctgg
//
LOCUS       KCLJ01002285             645 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 255372cal ultra-conserved element locus
            uce-6693, sequence.
ACCESSION   KCLJ01002285
VERSION     KCLJ01002285.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 645)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 645)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..645
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="255372cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>645
                     /note="ultra-conserved element locus uce-6693"
BASE COUNT          209 a          131 c          141 g          164 t
ORIGIN      
        1 cacacactca cacacgcagg caaacagaaa gaatgaaata agccattaag aaatatttcc
       61 gcataatgca attattacag ctgtataatt gaatggggaa accattgatc tgtagtagaa
      121 aggaaattgc tcttttcatt gtgttcctat gaatatgtga acattaatct caatctataa
      181 tcaacgttca tttcaaatct gattgcgtgc cactaaacac ccgtagctat gctaacatta
      241 tgttaatacg gttcaacatc atagctccca gcttcacagc acaaatattt ttctttggca
      301 atcaatagta atttcagctg agtggatgga agtcacgttt taatggtaat ctttcctcca
      361 agcctccgag tggaaactcg actggtacct taacacggcc gcagtgcatt gcatgtaatc
      421 agataaatta acctaaaaga gagagagaga aaacacagat caggaataaa aagcggcgcc
      481 aagaagctct acattttcct gatggattaa agtgctcatt atcatgagag agagagtgga
      541 tttcaagagg ggaactgaat tcccttggct ttgagccgtg gctggagagg cagcaggtca
      601 cgatgcgctc ggcacagccg gggatgcctc caaggagggg gaagc
//
LOCUS       KCLJ01002286             376 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 255475cal ultra-conserved element locus
            uce-6287, sequence.
ACCESSION   KCLJ01002286
VERSION     KCLJ01002286.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 376)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 376)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..376
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="255475cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>376
                     /note="ultra-conserved element locus uce-6287"
BASE COUNT          128 a           57 c           68 g          123 t
ORIGIN      
        1 ttccctttca aagtctctac tagaggggca cttactctgt caaatctgct atagtaatca
       61 aaacattgaa attacttctt tccacactaa atatactgga actggttgtt tgattaaatg
      121 tagagcagag agtgcaattt gctaaattac aagtattctg aacatgtaaa tatagtttaa
      181 ttactgcaat taaagaagat tactggagat tggcagatgg gaatgtaatg ctgttttaat
      241 tagagttttt aatgcactgt aacataagca taatattaac cctttatcct ggaaagggct
      301 ggctagtctc tgaaaaatat cctttgaaaa atgtactaga gctagtgttt cataacaagg
      361 tcaattcagt gcaaag
//
LOCUS       KCLJ01002287             841 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 255577cal ultra-conserved element locus
            uce-7656, sequence.
ACCESSION   KCLJ01002287
VERSION     KCLJ01002287.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 841)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 841)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..841
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="255577cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>841
                     /note="ultra-conserved element locus uce-7656"
BASE COUNT          210 a          174 c          215 g          242 t
ORIGIN      
        1 tggtgaccag gatgctctgc cctctggctg cctctgcaga ggggcaggga ttcggtgctg
       61 caaagccctg aatgggccac ctgtgaggtg gcaggttttg ctgatgacaa atgtgtgcca
      121 ctgatgggta cgtgcttttt gacctgcttt aatttttcta gctgggcctt taattgccag
      181 ggagaggaca aatgcaataa atccaaacaa atcagagcaa ggctctacaa ggaaatacgt
      241 tttagaaaga ctttttttcc ctaattaatc gggattttgt tgtcaggcta aaacagacta
      301 aaaataaaca gctgtatagt acttcattaa gctgcctgct tggagtgatt ttcccattga
      361 ttagtctcag ggctaatgct ggttcattcc tcatttcatt gctaattaac atcagctctg
      421 ctcctgacca cttgaccgca ctctctctat gaacatgtgc tggtttggca agtaataact
      481 gctccctccc tcttgagtta aggtacaaaa tagctgtcaa gagtagatct gtgcctctac
      541 tgtaaggagt aaaaccgtgt cggcccgtaa gaagggtaat aaacggagtt tacagagcgc
      601 aggagtttga ttgaggaact atgtaaatac agatgatgag ctcaggctgc tgtatgaatt
      661 gacaggcttg gctcatctcc tgtcagttga gttgattcag gctcttctgg gatgctcgtg
      721 gtgcagatta cctgacccag gggcttaggg cagctgggtg tgagaggagg gcagctttgg
      781 atgggcagca cttacttttc ccagtttcct caatgttctc agaggctgaa taatgaagta
      841 c
//
LOCUS       KCLJ01002288             790 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 255687cal ultra-conserved element locus
            uce-3239, sequence.
ACCESSION   KCLJ01002288
VERSION     KCLJ01002288.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 790)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 790)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..790
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="255687cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>790
                     /note="ultra-conserved element locus uce-3239"
BASE COUNT          218 a          145 c          167 g          260 t
ORIGIN      
        1 ctgcagttgt ttagagaaat atgtgctccc tgaaggacat aaagcacaga tttgttttct
       61 gatggaagtg tctcacttct gaaactattt tccctaaatt aactttcatc tcggttttcc
      121 ttttattctt catgaggtat gaaaatggcg gatgttaaac aaaagaaata tttttgccta
      181 taaaatcatt atatgcaagt agccttctaa tctcttaatt ttgattgttt cttcgttacc
      241 ttacaagatc tgtatttctt ctctctttag gatatctcat gtcagattta aggcttattt
      301 aaaatgaaca gaaagctgaa gcaattttct ttattccatt tcagtctcct aaggcctatt
      361 tccccctggt gagctcatag caacaggggg gtttaaggga attcagcttt ctgcaaatta
      421 atgtctcaca tcatgaaaat tcaggacctt tttttttcta tgtcttgaaa aagtaataca
      481 gtgagtgcga gtattatttc ttgccagcgg gtggaagatg aatgattttg tcacagtttt
      541 actgcttgat gagcagtgtc ctgagggtca ggcttaagtc tgtgtcacta tgctgctcat
      601 tactcttgag ctaaataagg gctgattgga tctaaattgc ctagcacatg ggccgcagat
      661 gagctcagtg agtaggggat gacctgctat tcaggctggg agtaaccccg gtgtgcaaat
      721 gctgcattag aacaccgtgg gagaatgaga ggctaccgac cgctgccagc aaaagaaatc
      781 gaaatgtaaa
//
LOCUS       KCLJ01002289             592 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 255796cal ultra-conserved element locus
            uce-718, sequence.
ACCESSION   KCLJ01002289
VERSION     KCLJ01002289.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 592)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 592)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..592
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="255796cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>592
                     /note="ultra-conserved element locus uce-718"
BASE COUNT          174 a          108 c          111 g          199 t
ORIGIN      
        1 tccccagaat gttatactat taattgccaa tttgcatatg tgtgcagctg ctgttttggc
       61 tccgatcttc catccgataa gcttgctgga ggtatcacag agcacttggc agctttccta
      121 tttgaaaaga aagccttcct aactacagaa cagctgatag tctatcagtg atagaccctg
      181 atggcgtgaa ttacaattac actacttttc acactaaatc tgggtgatag ctacttggaa
      241 agaagtttca tcatttttta ccacaaactg gaaaaagaat tacatggtca tgctgtgctt
      301 ttaaaggcag tttggttcac ttttgtctat ttaacaccta attccgagga gtccataggc
      361 atctggagat ctgaacgtcg cgtaatgaat tcactgttta gatgggagat tttttaaatc
      421 tacctcaaat tacatttatt aacaaggaga gcaggaagtg ttagagttgt tagacgcttc
      481 atttattaaa taatttgtgg atattttcag ttgtcatatc cagagtcatg ggggtttact
      541 tgttttttaa ttagcaattc caaaacaatg ctaccacaat ttaacaattc at
//
LOCUS       KCLJ01002290             642 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 255906cal ultra-conserved element locus
            uce-4347, sequence.
ACCESSION   KCLJ01002290
VERSION     KCLJ01002290.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 642)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 642)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..642
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="255906cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>642
                     /note="ultra-conserved element locus uce-4347"
BASE COUNT          163 a          185 c          140 g          154 t
ORIGIN      
        1 agatatgagc tgcaaagcaa tggggaccaa ctgaggacaa ctgtgtaact tatcctacct
       61 cgagacatca ctcagagtaa tgttcccacc acccaaagcc aaagagactt tcttccaaac
      121 aaagcttcag ccatggactc ctcaccagca aaggtgccca cctcgggacc cacctcaccc
      181 tccccatccc cagttcagcc cttcatcacc ccaaatccca agagcctcac atgttgagaa
      241 aaagccatcc ctgctcccaa cttacattta aaggctttag gtgaggtttc gctagtctga
      301 atctttgggg caagcatgcg tttgccaaaa acctgagcat caaaacttgc ataatcgaag
      361 gtgaccttgg agtacttctc cagctccttg gccaagttgg cccggggggt tgctgggacc
      421 atgttgggcc tgtagcttcc atactgaggg atctccagtt gcttcacaaa gcacataggc
      481 ctgaggatga atgaacagca attattttgt cttgacgagg tgactgttgt gaggggacca
      541 gacacaatca gctgcacctt cttcctggac aaggaggcag tgacagctct ttgctctccc
      601 tcggcaagcc tgcatctgat ctggatctct cttctttcta tc
//
LOCUS       KCLJ01002291             436 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 256016cal ultra-conserved element locus
            uce-3081, sequence.
ACCESSION   KCLJ01002291
VERSION     KCLJ01002291.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 436)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 436)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..436
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="256016cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>436
                     /note="ultra-conserved element locus uce-3081"
BASE COUNT          152 a           77 c           64 g          143 t
ORIGIN      
        1 ctattcatta attacaaaaa atgcaatgat cccaatagtg ttcattcaga gtaaaattta
       61 acaggacaat aatatgtacc tcaacagact gtttgagtta tctgtccctt ctttaatctg
      121 agagattact caacaaaacc aatgttcatt caacaacatt catgaaatct gttgtggatt
      181 accaatatca tcagttaaac ctgtttcaaa tttattgctt tcattcaggt taaataataa
      241 aagagtccat ttgtaccacc acatgtatat acacgaattc agctttcatc attctctaca
      301 ggtttaatcc atgatttatg ttttttaaca cagttttggg caaatctgtt gaaaaaattc
      361 agccagactg atagaagagt tagactggat taccatgatg cgtgccatgt ttaaaaccag
      421 tttggagaaa aggaaa
//
LOCUS       KCLJ01002292             486 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 256123cal ultra-conserved element locus
            uce-7384, sequence.
ACCESSION   KCLJ01002292
VERSION     KCLJ01002292.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 486)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 486)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..486
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="256123cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>486
                     /note="ultra-conserved element locus uce-7384"
BASE COUNT          149 a           90 c           82 g          165 t
ORIGIN      
        1 ttttacaact ctcctttcat gatggagttt ttacttagag ttccctctgt tgatctgttt
       61 tcgattactt cagatcttta taaaatgaac tacaaaaaca caatttaaaa aactggcatc
      121 catcaccagt gactgcatcc aagtgtaaga aaatagaaaa gttggacact gaaaaaccag
      181 cctaattttt attgtacatg gacgtcctcc tcacagaaag tcagctggtt taaattcatt
      241 ctgttatgat ttgtaatatc taaatggaat tttcttcaaa gtgctcttga ttgattgacc
      301 cttagctgaa cgttttgttt ttattttgag gctgacaata atgtttgttg gcatgtgttc
      361 tgcttcaact gcgttgggac gccatgaagc tatctttatg agtcatccaa ccacaatact
      421 aaatacatgt cagcaaagga aatattatcc gaaaagggaa aaatcccttt gatgtacttc
      481 agcatg
//
LOCUS       KCLJ01002293             693 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 256232cal ultra-conserved element locus
            uce-712, sequence.
ACCESSION   KCLJ01002293
VERSION     KCLJ01002293.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 693)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 693)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..693
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="256232cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>693
                     /note="ultra-conserved element locus uce-712"
BASE COUNT          239 a          121 c          136 g          197 t
ORIGIN      
        1 ggttaacctt cagcaaacat ctttccaaat cagcactgta gacctgtctg gcgaaggaag
       61 gactcataga gaggataata attaattcct aaacaaataa atacaaatgc aatcagaaag
      121 agtattcatg tttgttttaa cttgacacta cgaaagaaga ggcaaggaac aatagtgagg
      181 tccagctgtt gtttttcttg aagaagtccc agctcctcat gcagagaaac tacacttgag
      241 atgagctggc tgagacaaat gttctgtcta cactttaaat ggcagctggt tattaaatga
      301 ctcccaatag gatgaacact tgctattgac aataaggtaa tataaggacc gtgcagtgca
      361 atcaggatgg gaatgtgaat gaaaaatctt taatctgaaa ttacagctgt cagggctata
      421 ttataaaaca tgaaagttgc atctgcactt agaattaatg tgtcccaaaa gccaagtttc
      481 tcataaaggg catcttgcag atacatcttt tataaataga ctactggtct tccgtaaatc
      541 aaaccgaacc atagcctata ctgaggaatt aaaagggtca cctcttctgg ggttggtatt
      601 tgttgaacag tatttggtaa aaatgaacat tgatttacaa agtccaacag atactggtag
      661 tagtattact ttataatgat attcactgac tcc
//
LOCUS       KCLJ01002294             728 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 256346cal ultra-conserved element locus
            uce-4887, sequence.
ACCESSION   KCLJ01002294
VERSION     KCLJ01002294.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 728)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 728)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..728
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="256346cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>728
                     /note="ultra-conserved element locus uce-4887"
BASE COUNT          224 a          143 c          157 g          204 t
ORIGIN      
        1 ttcacacaaa attattcaaa aaaattccta caatatcttt aggcaacaaa ggatacttct
       61 ggtcatcgtg tgaattctgt gtgctcaaac tctgatacaa accaaggatt ttcttctttg
      121 tactaagtat gggaaagcct gctcctttga gaattagaat agctttcgaa gacttctgat
      181 ttaaatttca aactcttgat catagtcagg gagcaaatgt ttgtatcctg aaattgaaaa
      241 ttgggttctt tagctctata ccaagtgaaa atattaagca ttttgttgca cccactatgt
      301 gagccaagtt ccccactgtg ccttcaaatc cacagtgaat gaaccatatt tggatctgct
      361 tatcagaagg agacatttag aaagacaatg agcctgtcct gctagacgga gactcctgat
      421 gcttttagat aggcctgcgg tgaactgcaa aatgggccct aaaatcaggc tgacatggtc
      481 gcttaacaag ctgtggtatt agctgctggc tcagagaatt tctagtgtca cccacagggc
      541 tgatgatggc agccatcata attagaatgc atgaatcaaa aacaccaggt gaagattttg
      601 ccttggaaga aagaaaagag agaaggaggg aattaccatg ccctttgact actaagctgc
      661 tgcatgcagc tggatcagtg accaacagtg actgggcgga ttatgctatg gagatacttg
      721 ctatagcc
//
LOCUS       KCLJ01002295             563 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 256453cal ultra-conserved element locus
            uce-4928, sequence.
ACCESSION   KCLJ01002295
VERSION     KCLJ01002295.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 563)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 563)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..563
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="256453cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>563
                     /note="ultra-conserved element locus uce-4928"
BASE COUNT          207 a           89 c           92 g          175 t
ORIGIN      
        1 tctcaggcac tatagaacct tcacagtaaa gataaagaaa gataaatgga attaatttat
       61 tttgaatttc tgcattaata ttaagctaaa atctaaatag aaggactgta atcttagaag
      121 ttctagcatc agcaaatcat tcttgtttac cctacatgct aataaaacag gaacatgaca
      181 ctcctgaaaa caagattgca aaatacagaa aatgtggtct gacatttttt ttctccccaa
      241 aggagggact gccactaact aaagtatttc ttatgaaagc tcgattgctt aagatgcaga
      301 atattaagag agaaaaacac tttaggacac agccatgtca ccagctgtta ctcaccctta
      361 atgaaattgt taagtgatat tcttcataaa taggtcagag aaacttttga attgtgaagg
      421 atgttttatc tctttctttg aaatgtttgt attaaattta gaactggtaa ttcattaagc
      481 tcattagctc tgactaggag agtagagcaa tatctaggat atagatttca aggcttaaaa
      541 accttagtgc ttacaaataa aca
//
LOCUS       KCLJ01002296             494 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 256565cal ultra-conserved element locus
            uce-3014, sequence.
ACCESSION   KCLJ01002296
VERSION     KCLJ01002296.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 494)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 494)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..494
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="256565cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>494
                     /note="ultra-conserved element locus uce-3014"
BASE COUNT          139 a           77 c           78 g          200 t
ORIGIN      
        1 taagagccca tagaaacttt tcttttgcaa tccctaaata tttgggttca cattatattt
       61 agctaggatt tattagacta tttcatattt gcccttctgt ttattttgta taagtatact
      121 tgtctagcac acatttttat gccagccttg ctttgcattt ttacagtctg ctaattagac
      181 cattttaact aatttgtttg cattttgtat gagcaagttg ggcttttgga ttgactaatg
      241 taattgcagc cagtttctgc caaatacaaa ttactctttc tagtgtgagc tagagagaaa
      301 agtaaatatt taatagccat caataccctt gcagcattct aaagtgtgct tttttcctat
      361 ggaaagttta aataatttct tcagtgcttg attgcacttt aatgttaaga aattattttt
      421 taatcgaaat aataatgaat tagacatttt agcatgtccg caagggtttt atttctgtgc
      481 actgtgcagt ttta
//
LOCUS       KCLJ01002297             718 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 256674cal ultra-conserved element locus
            uce-5158, sequence.
ACCESSION   KCLJ01002297
VERSION     KCLJ01002297.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 718)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 718)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..718
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="256674cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>718
                     /note="ultra-conserved element locus uce-5158"
BASE COUNT          194 a          148 c          168 g          208 t
ORIGIN      
        1 cagtgctgat agcaatacca tgtgggaaga tggtgtgttc tgtctagtaa tcaaacctca
       61 agttggttta gactgtgcta gtacactaca tgtctgtagg ggctttctgg ggtactagct
      121 cctggtagag ctatcagcac tggctttgaa ctaaggtagg taaccttgat ggccttcaga
      181 ctagagattt tgatgcttta aataatcagg tactctgtag ctttgaaacc ctcttgtctt
      241 acagatgtgg ttaggtgttg atgtaccaaa tcaaggtagt aaacagtcca agatgcagtt
      301 ggaggccatc ctgccctgcc ctatgctctg tgcactgacc tagctaggcc ttgttcctct
      361 atctgtgaat gcgtgactca tcgatatggg cgtttgtgtt gggcccatac caaccttgtt
      421 tagtcccaca gtgttttgtt cgccccacgg aagcaaagaa agcagcagat gaagccaaga
      481 tgaggtttgc ccacatagat ggagatcatt tgacgttgct gaatgtctac catgctttca
      541 agcaaagtaa gtctgtttta gtaaaattgc agccaacttc catttctggg ttccaaggac
      601 acttgaagtc aaacaaaaca aaaaactacc caagcaatct tgtaataagc caggctttaa
      661 atcaatgctg ggtagccttg gacagcaagt gttcctgtaa ttaagaaata ttggaagt
//
LOCUS       KCLJ01002298             410 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 256788cal ultra-conserved element locus
            uce-6881, sequence.
ACCESSION   KCLJ01002298
VERSION     KCLJ01002298.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 410)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 410)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..410
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="256788cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>410
                     /note="ultra-conserved element locus uce-6881"
BASE COUNT          115 a           91 c           69 g          135 t
ORIGIN      
        1 catgacgggc tcattatgga gcgacgcaat ctcctggtaa acactgggtt cccctggaag
       61 atgcttgttc ctctcgttat taattagcac gtgtccactc cgccagatcc agagcccaaa
      121 cttcatttgt tatgttcagc caaatgcatg agtagctttg gagtaattat tttccaacat
      181 catctaatac ctctctgcac atcaattaaa aatcctctta acaaggaact gcattttgtt
      241 ggagatcaaa tgcctcgtcc aaagctgtat caatcatgta gagctaatta gtgggtctgc
      301 tttatatcat ttgttttact ttattattct attatacact tcctaatgaa accaattgaa
      361 caatttggaa atctttgttc aattaattga aggcttaaag gccagctccc
//
LOCUS       KCLJ01002299             581 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 256879cal ultra-conserved element locus
            uce-4300, sequence.
ACCESSION   KCLJ01002299
VERSION     KCLJ01002299.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 581)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 581)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..581
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="256879cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>581
                     /note="ultra-conserved element locus uce-4300"
BASE COUNT          192 a          104 c          137 g          148 t
ORIGIN      
        1 aaatgtaggg ctatctatgt gtaaaccatt cagtagcata gctgattttg tttcagtgcc
       61 aaattgatta aaaattcctc atgtttgttt tgcagtcgtc aacaagaaat tgaagagaaa
      121 ctcatagagg aagaaactgc tcgaagggtg gaagaacttg tagctaaacg cgtagaagaa
      181 gagctggaga aaagaaagga tgagattgag cgagaggttc tgcgcagggt ggaggaggct
      241 aagcgcatca tggaaaaaca gttgctcgaa gaactcgagc gacagcgaca agctgaactt
      301 gcagcacaaa aagccagaga ggtaacgctc ggtcgtttgg aaagtagaga cagtccatgg
      361 caaaactttc agtgtcggtt tgtgcctcct gttcggttca caaagagatg gaatacagca
      421 aatctaattc ccttctcata taaacttgca ttgctgcgaa acttaatttc tagcctattc
      481 agaggagctc actgatattt aaacagttac tctcctaaaa cctgaacaag gatacttgat
      541 tcttaatgga actgacctac atatttcaga attgtttgaa a
//
LOCUS       KCLJ01002300             641 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 256991cal ultra-conserved element locus
            uce-7036, sequence.
ACCESSION   KCLJ01002300
VERSION     KCLJ01002300.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 641)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 641)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..641
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="256991cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>641
                     /note="ultra-conserved element locus uce-7036"
BASE COUNT          213 a          110 c          127 g          191 t
ORIGIN      
        1 aatactttta tctgaagact tcaaagtcac atgcaaaaaa atatatcaca gtaaacacag
       61 ggttgaaggt tttatagaat ttctactggc tttcccctcc ttcttcttta aaagaaattt
      121 gtttactacc agtctttgaa aagcataaaa gggaggaaac tattaaaact tttacatgta
      181 aggaacattt ggagctttgt gagaaggctg gttttgacag aatatgcgcc atgtagccca
      241 atgtgagtaa tattagatct caaataaaaa tcagcccatg aatatacata atccaaaagg
      301 taattctccc aatctctgaa atgtaatgga gccactctag atcactgagg catgaatatt
      361 taccgtattc aggctttact gctctcgatc tgggttcaat tttgcaaatt aaaatgaagg
      421 ctctgtggat agagagatta aagaagagca tcccaaagcc tgcctgtttg cttggtgtgg
      481 tagcagtgat ctggttaccc ttctgttggg ttatttctac ttattggagt agttcaaaag
      541 caatcgagag tggaaaagga ggtcattttt gggtcacaac cttgagttac aggctcccta
      601 agaaaaacaa acagagtgaa cataaagctg catttaaaaa t
//
LOCUS       KCLJ01002301             459 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 257101cal ultra-conserved element locus
            uce-5856, sequence.
ACCESSION   KCLJ01002301
VERSION     KCLJ01002301.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 459)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 459)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..459
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="257101cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>459
                     /note="ultra-conserved element locus uce-5856"
BASE COUNT          131 a           60 c           86 g          182 t
ORIGIN      
        1 aactctaacg aagaggcagt tttaatgact ggtgaagaga tttatctctt tgtatattaa
       61 atagctgtaa tgtagctacc ggaagcttga ctaattgagg tgtgagttct gactcaaatc
      121 tttttcatga tgattttgaa ataattggat tttaaaggta ttaaagtatt tttgttttgt
      181 acaagagttt gttgctctgt atgactcctg tatgcattgt atattgcaat ttattactgt
      241 cagagatttg tagacagttt cttattttca tattgaatca tgttactttt gtaattcagg
      301 taaacagctg ggttaattca tgcttaccct ttgaataaaa ttgtaagggt aaagttcatt
      361 tttgaatgca agttgccttt attataaaga ttgagttagt cttggttatg taacttgtct
      421 tgcatgacaa cctcaactaa cctgacacgt cagcttatt
//
LOCUS       KCLJ01002302             616 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 257204cal ultra-conserved element locus
            uce-5821, sequence.
ACCESSION   KCLJ01002302
VERSION     KCLJ01002302.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 616)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 616)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..616
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="257204cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>616
                     /note="ultra-conserved element locus uce-5821"
BASE COUNT          210 a          109 c          110 g          187 t
ORIGIN      
        1 atttgcaagc catgaaagag tatcaagaaa ttgtcttttc ttagttctac taaggtgaat
       61 ctattaagaa gtccacatgt ctttttttaa aacaagttcc tttaaaagca gacttttaga
      121 agtatgcaat aaatttgaga aagacatttc cagcacaagt tttaagttca gcccttaagt
      181 tattatatgg aattgttaca agtcaacagt aggtggttta taaaatgtaa ttttatttaa
      241 tgttactttg ctgttacaga gggcttttca caaggctttt ttgggactac aatcaatgat
      301 tagcaacaca caatagtggt ccaaactctc taacaatcac tggacaaact tgacaccttc
      361 tcacatgtgc acaaacctgc atggaaaagt actaaatttt atacttggac atgtgaactt
      421 caattggttt tcccattcca gtgtattaag aaatgacatg cactgccaaa aagcactgcc
      481 tgtactccag cagtaacatg ctgctaaagt gaataccaga actacaaagg caggagtgta
      541 agtgaacttt tattgggaag ggatatcaac tgaaacagca gcaactgaag attaagagaa
      601 gcccctgttt ttgaac
//
LOCUS       KCLJ01002303             650 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 257316cal ultra-conserved element locus
            uce-4944, sequence.
ACCESSION   KCLJ01002303
VERSION     KCLJ01002303.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 650)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 650)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..650
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="257316cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>650
                     /note="ultra-conserved element locus uce-4944"
BASE COUNT          181 a          111 c          119 g          239 t
ORIGIN      
        1 aaatgcttta ctcatatcct gcagagtttt tctagtaaga tttgataata tttctgatca
       61 gcaaactaaa gcccgtggtg aaatgcaggc tttctgcagg gttttgctca taacgtgtta
      121 catgttggaa caaagatgca ggattgccct tttctgttaa atgttcagtg gaaaattgta
      181 tcagatcact taatattgca gtttgatgta gtgtcttttt gtgccattga gccaggactt
      241 tgaaacataa ttgcccagca gtattgattt aattgcctag gtttatttgt ggactcctaa
      301 ttattgactg gaggtaaatt taatggagaa acctttatga acactgggaa actgctgcta
      361 ttgctgttat acataatgaa ctgcatcata tccctttaga tcattcttca agctaatttt
      421 attctactgt gacagtacga taacatttaa aatgtcatag acattttatt tttattactg
      481 acatacgcca ttttactgct gcactagaaa ctgagggaag cactggttgc tttttactgt
      541 cattttatag gttcccctaa agtggataaa ggatgccaca aatctgtttt cacttcatct
      601 gtactttatt ttccttatga ctggtatctg tcagctttac aagattgtta
//
LOCUS       KCLJ01002304             504 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 257426cal ultra-conserved element locus
            uce-2565, sequence.
ACCESSION   KCLJ01002304
VERSION     KCLJ01002304.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 504)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 504)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..504
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="257426cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>504
                     /note="ultra-conserved element locus uce-2565"
BASE COUNT          146 a           89 c           93 g          176 t
ORIGIN      
        1 ggcaagtatc tcctgacaac taatttgata gttctctatc aggtaaacca tttgtgaata
       61 catcgattct ttttattttt cactgttctg tcttcactgt tcccaggttt tctctgaacc
      121 ggttgggcaa aaattgattt ttatttgttc cactggcctt gtggaaaatt agcttatgaa
      181 ctggttttta taggaagact caaagcacag aaagggttga aaaataagcc tatagcagtc
      241 aaattgttgt ctgaaatgtc ttcagactgg aaggctgaat ttattgctca aaacaagtac
      301 tagcattgtg gaggtgtgca gtcctgctca ttatcactgg aaaaggggga accaaaaagc
      361 acagtaaaaa attaaatttt aataatgctc gtgatatttt ctaaatcctt cttgacagaa
      421 agattctcat tatttttatc tgtctcagag taggctcttt taatgccatc tcacaaatgg
      481 ccttagccat gattgttttc cttt
//
LOCUS       KCLJ01002305             421 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 257536cal ultra-conserved element locus
            uce-4181, sequence.
ACCESSION   KCLJ01002305
VERSION     KCLJ01002305.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 421)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 421)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..421
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="257536cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>421
                     /note="ultra-conserved element locus uce-4181"
BASE COUNT          145 a           65 c           66 g          145 t
ORIGIN      
        1 ggaaaatgat tagttttctg atgctgatag aaatactgta cttatgtctg gcacatctaa
       61 actcataaca tctatttgct ttgctttgtc aaaacatatg aaaaatcatt aaagtgtttt
      121 aataaatgtc tggttttctt gctcattcat cttataaata ttaattagcc atggatcagg
      181 caattaaagt ttaatcaatt tgcactaatt agcaccacat actcgcataa aaagataaaa
      241 ccagctcctg catctggctg ttatttgcag tttttgtcaa gtgctgatga gtttcatctt
      301 gaagagaaga ttaagaagaa aagaggaaaa taagaaagta gtgttaattt tattaaatct
      361 tcaatcaaac cttctgttca taagctttgt gggacaatac caggtaacat ttcactttac
      421 a
//
LOCUS       KCLJ01002306             400 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 257645cal ultra-conserved element locus
            uce-2866, sequence.
ACCESSION   KCLJ01002306
VERSION     KCLJ01002306.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 400)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 400)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..400
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="257645cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>400
                     /note="ultra-conserved element locus uce-2866"
BASE COUNT          114 a          100 c           72 g          114 t
ORIGIN      
        1 cctgacagag aacaaaaagg tcagttgtac cctcagttgc ctttggagcc tgctgtgctc
       61 tgtgtttatc aaccaaacta atctatccga gttactctgg gcttcagaga aaccactcat
      121 ctgctgctct atgcccctcg gtcccccgag gctgtgctga tggcatctgg cgcgtttcca
      181 gagaacagaa gatggcacaa agctgccatt aaaatcaatt acatgggtca atgtttttat
      241 tagaatctct ctcaaactaa gtcatcagga tgacactcag ttatttccct gtgacctttt
      301 tgcgcgtgac caaaagacac tattaaaaaa attcaattca attcttaaag acaaaagaat
      361 gccttagcct cacaggtaat cctcacattt ccattttact
//
LOCUS       KCLJ01002307             539 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 257753cal ultra-conserved element locus
            uce-4066, sequence.
ACCESSION   KCLJ01002307
VERSION     KCLJ01002307.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 539)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 539)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..539
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="257753cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>539
                     /note="ultra-conserved element locus uce-4066"
BASE COUNT          180 a           80 c           96 g          183 t
ORIGIN      
        1 agataccctg tggatatcaa tgagatacag aaatcaaagg ctacgtttgg tatactacaa
       61 tgcaagctaa gtggatgagt gtcattagtg gacatgtaac ccacaacatt ttggctacct
      121 ccatgaatga ttaattaaaa gaaaaaatag ttaatcaaga taaacttcta cacctagcta
      181 acagagaact gaaagtttat catgtctaaa tatgtttctc atacatttac tgcaaattag
      241 tttttgaaag tgaatttcaa ggtctactgg ctccgaggtt cactaactca gttttcatta
      301 agttttcaca aatgatctac tgtagcatta ttcttttata gtagtggaga tttaaggccc
      361 agtatgaaaa gcaattatac tgtcagaaaa gtgtattttg acttattaaa atattgaaag
      421 gaaactattt attttggtgc tcatttggag tgcatgttga cagcgttatg aagaaagtct
      481 ttttttgggt tgtatctctc aaccttcttg ttgaaaactt gagataatct tacttagaa
//
LOCUS       KCLJ01002308             706 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 257862cal ultra-conserved element locus
            uce-1562, sequence.
ACCESSION   KCLJ01002308
VERSION     KCLJ01002308.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 706)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 706)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..706
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="257862cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>706
                     /note="ultra-conserved element locus uce-1562"
BASE COUNT          268 a          128 c          113 g          197 t
ORIGIN      
        1 tccaactgcc tctttacatt agctaaatga agtcatcagt aaacaaaatt ggaagaaatc
       61 ttaacacaac tgctgtaaac aactttaaaa gttttatatc ccaaaagatt aaaagtgtta
      121 gaagacagtt cagattcact ggagatgttc accactggta aagtttatag tcaaaactct
      181 ctcatctcac ccaaactgat actggtcaca gcaaattata atcaaagata gatttcttgg
      241 agggtgataa taccattaga tttaaggaat taaaaataca tgaaactttt gagttaatga
      301 acagggtcct taactgctca tttaattcaa acagctgttt gttaatgccc taagcagtgt
      361 cataaactgt gaaaatactg ttgagtgcaa gacactagtt aatgctataa agcaacacat
      421 gctctaatat taaaaggatt taatgggatt aatagagaat aaaacattaa ctccctatta
      481 cgatgttttt gggacccaag ggcaaattct ggctaaaaag gactctggtt ctaaaagcac
      541 aaaaagtaaa ctatagcact gtacagcaaa tcatggcaat tttatgctcc tgaaaaaaag
      601 tggaaccctg ataagatcgc atctgttcca atcacagact ggataaaatc actgtttact
      661 aaagtcctaa ataactaaat atgtggaacc ccaacaagat cccatc
//
LOCUS       KCLJ01002309             559 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 257972cal ultra-conserved element locus
            uce-3110, sequence.
ACCESSION   KCLJ01002309
VERSION     KCLJ01002309.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 559)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 559)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..559
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="257972cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>559
                     /note="ultra-conserved element locus uce-3110"
BASE COUNT          181 a           93 c          107 g          178 t
ORIGIN      
        1 taagacgaga tgtgtttatc agaagcttta actttggggg atctacaaag ggactggttt
       61 gtcagcaaaa gacttataag tctccctaac agtatcaaag atattagggg tctctcaatg
      121 gtaggatgct agagttgcac actaaagata gcagacacat gcttcatgga agtagcacta
      181 ctgaaatata aacaagcctc cttcatccag acatttttgg ttatgtttac agattaaatc
      241 tcaggatgtg tatattagat gttcttgttt caggatatta atggcaaaat gaacctgttt
      301 ttgatgttta agtcacatta atgtctgatg gactgttaaa atgttaaagg gtacaccaga
      361 catgctgtag tatgtgacat atgttagtca taccatacta gctaggaatt tgggtttgtt
      421 tataatgaac ataaattgac tgaatttaac ccccctctac ctcctccaac agttaaatca
      481 cattaggttc catttcctct gaaagacagt cttgaaaaat tagatgaaac ttgaaaagca
      541 gttgtattca gatttcaac
//
LOCUS       KCLJ01002310             403 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 258078cal ultra-conserved element locus
            uce-2386, sequence.
ACCESSION   KCLJ01002310
VERSION     KCLJ01002310.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 403)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 403)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..403
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="258078cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>403
                     /note="ultra-conserved element locus uce-2386"
BASE COUNT          129 a           91 c           57 g          126 t
ORIGIN      
        1 acagacttgg atatctttat gctcttagaa gaagttaatg gaaaagggat ttcaacactg
       61 ttacaaacac atatagaaca cggcttgcag atactctgcc aattacctac agtcaaagac
      121 ctgttcattg catgacttta ttatttgact gagaatatca tgcatgtaga actaaaatca
      181 cctccaaaga attagtattt agaatgaacg aagcatatca ttccacctca ctctaattca
      241 tcacacctca cctgcttgcc aacatttttt attgccagct gttcaggtgt catcttatct
      301 tcttcttcaa cagcctgtga aagaaacaca gaaaaggtca gtgtttcaga tttcatttac
      361 ttttccccaa gccacagatt ctcaaaatac aattctgttc ctt
//
LOCUS       KCLJ01002311             812 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 258180cal ultra-conserved element locus
            uce-1383, sequence.
ACCESSION   KCLJ01002311
VERSION     KCLJ01002311.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 812)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 812)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..812
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="258180cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>812
                     /note="ultra-conserved element locus uce-1383"
BASE COUNT          224 a          145 c          159 g          284 t
ORIGIN      
        1 cattaaaagt tctctgcctt tctgttagct cagccttgcc catatgacac tgatttacat
       61 gcttgtttac agtttatgag gaagaataaa atgagcatac tggcaaactt ctcattttta
      121 tagtgccggt tgtcatgcta gcatagtttt caatttactt acctttggac agtcctctta
      181 tctggtgcta attgttttaa ctgcttaaaa tttaaacaca tggagatcac cttctccgag
      241 attctaattt tagagagaga aggagctgaa cacactgtcc ctgtttgcta tgtaaagtat
      301 gcctcatttc tttgatcttg agtaataata attctgggga gttatactgt tttcatatgc
      361 ttcaaagctg tgtcaaagtt ttgctgctta agggtacttc tttattctat tggctcttgg
      421 gtactgagat gacaggtcct ctgtactagg tgcaggcttt ttcaagtcat agccttcagc
      481 aaaacatcaa attaccaaat acagggtaac atacttctac acaaatgcct ttcctgtaga
      541 tatattatac catatatatt aaatacttta gtgttacacg gtacatttta tgtgcaatag
      601 aaagtgatgg tttgaggtag ccttaggggt acttttttcc acaagcagaa aaagctagtg
      661 tataccgtat caagtatggt ttttacagga ctttctgccc gaaggccttt gtaaataagt
      721 aatgatcaac agattggctg tgggtttttg aaaagcatgc ctgtgtcagt ttgcatgatg
      781 ggggaagatt ttcaaagtac agcctgcttt ca
//
LOCUS       KCLJ01002312             441 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 258288cal ultra-conserved element locus
            uce-5754, sequence.
ACCESSION   KCLJ01002312
VERSION     KCLJ01002312.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 441)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 441)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..441
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="258288cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>441
                     /note="ultra-conserved element locus uce-5754"
BASE COUNT          110 a          111 c           96 g          124 t
ORIGIN      
        1 gtaaatcatg acttccttgt gggatgtggt accttttccc actcttggct ccatttccca
       61 taatgccctt gaccccggag gtcacctgtc attggaagat gaagctctga ataaacagag
      121 aagaccctgt ggtgtctctt atctctgggt tttgcctcaa atctccgggc ggagttttaa
      181 attattcatc cactggtgct ctctgcgagt tacacgtctc cgtcacctgt ttgcctgccc
      241 atttgtgagt gaaggcggta tccttgggaa ccttatcaga gatcacagat tcaggctcca
      301 gaaatgaaat aaaagaggaa attggctgta ttagcataag aggagtcagc ctggagttga
      361 atacacacat cacccagaag caccactggc ttctcttatc agtaacgtct gatcaccatt
      421 ctttcaggca cacatgcacc a
//
LOCUS       KCLJ01002313             687 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 258392cal ultra-conserved element locus
            uce-5305, sequence.
ACCESSION   KCLJ01002313
VERSION     KCLJ01002313.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 687)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 687)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..687
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="258392cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>687
                     /note="ultra-conserved element locus uce-5305"
BASE COUNT          237 a          104 c          117 g          229 t
ORIGIN      
        1 attagctgaa tacattaaga gaaggctgga acacagattc tgtaaagaga gcaaatgtat
       61 gtttaatcct ctgttctttg cttacagatt accctttcag aacgagtaac cttattttct
      121 ttttaaatat ctatttttga gctttgcata gcaaagcagg gtttttttta tttccttccc
      181 actgttgcaa aagaaattaa tttgttgcta gttgctatgc attggcagga tttctgcata
      241 aagaatgtaa gccatctatc tttgtattca agatatagtt aatctggcag ttaaaatact
      301 ttggaaacat tttgatgact tatctggaaa agtagctttg cattttcaaa gaaaactcag
      361 aactgtattg caagaggaag ataaaagata tatgaagtgt ttgttccaag cgatactgtt
      421 catttaaaga tcagaatgta accccaccca agcaattatt gtggaaaaac aagacaaaaa
      481 tccttataca gctttctgac acggtcttta tttgggaaac aaaataacta tattacagtt
      541 atagcctaat ggattgcaag ctgttttatt agagtcagct gaatcctgtt tagcataaaa
      601 aagaactctg tttgctatca agaacacatt tacattaata tgactttgac aaagtaaaat
      661 aaaatcgcat taagatgatg taagtag
//
LOCUS       KCLJ01002314             659 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 258497cal ultra-conserved element locus
            uce-3720, sequence.
ACCESSION   KCLJ01002314
VERSION     KCLJ01002314.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 659)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 659)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..659
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="258497cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>659
                     /note="ultra-conserved element locus uce-3720"
BASE COUNT          204 a          116 c          123 g          216 t
ORIGIN      
        1 cctgaacagg ttcattgctg taaggaaaat cagtgtttaa ataggtgatg taacatggta
       61 tatgcaaaat ggtaaatgat taagcacctt aattagacct tgtttaatag tgctttgact
      121 aacctggaat atgacatata atttgacact acacatccca attcaatcaa aacctctttc
      181 agtggcatct taaatagtac ccactcatgc agactttcac attaaagtaa ttattggtaa
      241 gaacagaaag aaagtttact cttcctcttt atagtgaaaa caaatgtgtt tttctccaga
      301 atctgccaag cctgtgtttt aatgatttaa cagatggagt tggcacatgt gaacctggaa
      361 gatgcatctg tctgattttt ccagtctgag gattttttaa ctgcattaat ggcacagaca
      421 atggtaaaat atcacctccc caggctgctt tgctctccta acacataatg tcttttaagg
      481 gtgataggag actggggtga gcaaaaggcc acagaaatga ggatttgaaa gtttcatatt
      541 ttctgtcttt actgcattaa gcttttaagc ctttcacttt gatttcatgt gtatatggtg
      601 tggaaacaga aattctaccc aggcaacatt atgtgggatc tcggcttcta ttaattaat
//
LOCUS       KCLJ01002315             466 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 258607cal ultra-conserved element locus
            uce-5311, sequence.
ACCESSION   KCLJ01002315
VERSION     KCLJ01002315.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 466)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 466)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..466
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="258607cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>466
                     /note="ultra-conserved element locus uce-5311"
BASE COUNT          156 a           80 c           78 g          152 t
ORIGIN      
        1 ttctattcag ttttgaaata cctgcaaagg gcaacctgaa actgaaaaat ggagtaagag
       61 caatgaggcc tttagaataa ttatgtgttg ttaattgaag aatgttaatc atgtcatatt
      121 agaagtgaga gagggttaaa ttggtaaaat ttcaattcac ttaggcctta tctcttgttg
      181 gaatgaacca gatgattaat ccttaatatt cttcagggat acagagaaca tcagcaatta
      241 aattaacaac tacaaagttt atgctcagag attcaaaaat gaaagacaga aacactttaa
      301 tttttcacaa gttgttacct taattatctt cttattgctt ctgtctcttt tccctcatta
      361 caaaaacaca cccctcagtg ttcctggatc ctttaatttg ctgtagctca gcaactgtgt
      421 aaggaacgtc atcagagctg caaaagtcat aaatcttact ttgtgc
//
LOCUS       KCLJ01002316             527 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 258714cal ultra-conserved element locus
            uce-6140, sequence.
ACCESSION   KCLJ01002316
VERSION     KCLJ01002316.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 527)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 527)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..527
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="258714cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>527
                     /note="ultra-conserved element locus uce-6140"
BASE COUNT          156 a          102 c           86 g          183 t
ORIGIN      
        1 gctttaatcc ctgagtattc acatccctct ggctcttctg tgcctttggt taagtagaga
       61 cagtaactat gattccctca gtgactaaaa tgccaaacca cacacgacac cctctttgca
      121 ctccctatta aaattttaca ggtcaaaaat ccaaaaccca cttaataaaa attgttcttt
      181 atcgtaagtg acaagagaga gcaggtcaat ctatggaata atggtgcagt aattagaacc
      241 tttgtagttg ataaagtgtg actgttaatc aatgtttggc taattaatca atattttaat
      301 cattagacct tttaaatttg ttttaatgag catttcctct aattcccttg atcctgttgc
      361 ttccaactct tctattatct gtgttaaaca gcaaagtagg ctcatatacc cagattatgc
      421 tgtggttttg taagtttgta gtttacagca tgaatatttc tgaatgtgtg caaattcacg
      481 ttcttgtcca tgtttgcatt aagagagaga atgagccttc acaactt
//
LOCUS       KCLJ01002317             588 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 258825cal ultra-conserved element locus
            uce-5220, sequence.
ACCESSION   KCLJ01002317
VERSION     KCLJ01002317.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 588)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 588)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..588
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="258825cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>588
                     /note="ultra-conserved element locus uce-5220"
BASE COUNT          197 a          128 c           95 g          168 t
ORIGIN      
        1 actgtagtca cttacactct tacaaaacat gtgataaccc cgatagctta atattcagca
       61 tatataattc atttacatga tatagcactc ttgattgtgg ccctaaaaca gtttttattc
      121 atatctagca gctttctaga tcaaccacaa aaacttctac agccagcaat caaactacgg
      181 aacctccaga aattaaagac ccacaatatt aaaatacaca gaacaaaata tctgaggtat
      241 aagataaaaa atgtaatttt tcctcttttt agagttgcta aaatgatgca ctactgcatg
      301 tattgcaata cccaggcctc ggaaagcttc ctttttcccc acattggaag gtttttatgg
      361 ttttgtcatt tagtatggag caaaacggct gtatccccct cggtatatac tagcctgtaa
      421 tgaagaaaga acgagaccga catcatcagc atggctccta gtcttggcat cagtcaaggg
      481 tgcaaaagca ttctgaaaca aagcaattcg atggattgtt caacaactag ttttgcaatt
      541 tcatttgaca tgactactgc cccatccgaa aaggcaagca acgttcag
//
LOCUS       KCLJ01002318             774 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 258933cal ultra-conserved element locus
            uce-182, sequence.
ACCESSION   KCLJ01002318
VERSION     KCLJ01002318.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 774)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 774)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..774
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="258933cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>774
                     /note="ultra-conserved element locus uce-182"
BASE COUNT          218 a          152 c          162 g          242 t
ORIGIN      
        1 gtacttcata atatttttgt ttgtttggga aacccatttt acttccagat taaaatgtta
       61 ttgatgggct aagtcaatgc aatgaagtct cctattatga gaacctgaag tatgcaaggg
      121 attaaacatc tttcttctag actgaggatg tggggaggca catggtaatg ctaaaaatgt
      181 ttgaggctgc aaagattaaa taaaggaaca tatcaatttg gagccagtga attacatcca
      241 gctgcgacag tgaattaaga accgattaat ggctaaagct tttctccagt ttggatgccg
      301 aagcaaactc attaagcttt tagagtagct ataatgtgtg tactgtggga actgttcaat
      361 gctattcagg agactttaac tgtaagctca gagcatttcc cgcagagctt ctgatgctat
      421 tttctttata taacatgtgt gcctgaaaat ccagccaaaa acaagccctt tgtttttcta
      481 ctttgttgtg gtctctctca gctttacgtt tcttgaacac aggtaaataa actcataatc
      541 cagatggtgc agcagatgtg agagcagcac tctgaaatca acagacagtg ggcaatactt
      601 tccattttct cttttaaacg ctaactaata tgtaattcgg aatctccggt gtagttagca
      661 tctgctccct tcggccagcc aaaggttaca ggtgttcctg atgtcatttc acagtaaggc
      721 gtgggcctgg cttgtgagtg agtgcccagg ctctaatctt tccctaccac ctac
//
LOCUS       KCLJ01002319             641 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 259044cal ultra-conserved element locus
            uce-7069, sequence.
ACCESSION   KCLJ01002319
VERSION     KCLJ01002319.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 641)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 641)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..641
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="259044cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>641
                     /note="ultra-conserved element locus uce-7069"
BASE COUNT          181 a          126 c          184 g          150 t
ORIGIN      
        1 tgtggatgct cctgaagaag aatcagaagc aggaacaaca agatggggag gtacaaagat
       61 gctccatggc cataaatacc tgtcatcacc aaaatagtgt tgctcacctg caccagcagt
      121 ggaaacccag ggatacggca tctctgtcag gggcagaatc catggaggga caccgccggg
      181 tcacgctgac tagtagggct cagcgatcaa acgtgtcaca cctgtcttgg ccacgggtgc
      241 aggtgttcta ggtcagctct cgctgtggtt atcaatcgct gacagttgac agtttaattt
      301 tacaccacaa gtacctcatt acttgtgtag gcacttgaag aacatgtggg cactgggttg
      361 gatcagtgat caatgacaaa ggttgcgcag ggtgcaagtg gtagcagtaa aagtgaaggt
      421 ctccgtgcat gagttggcag tggtggggat acatgacaag gggagtttag ctgacaaaca
      481 gtctgtcagg gctggaagaa tggaggctcg caggagagct ggcgctccat tataaaatac
      541 agctcgccat ttaaaagggg tgggtggaaa aaaaaggctc ttgctttgaa aaactgttta
      601 aacaaattta atgcgtgtga gggactgtaa atttttattc t
//
LOCUS       KCLJ01002320             687 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 259152cal ultra-conserved element locus
            uce-6892, sequence.
ACCESSION   KCLJ01002320
VERSION     KCLJ01002320.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 687)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 687)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..687
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="259152cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>687
                     /note="ultra-conserved element locus uce-6892"
BASE COUNT          207 a          143 c          143 g          194 t
ORIGIN      
        1 tgcctttaga gggctttgta tactcatttt tttcccctag tccaataaaa gatattagct
       61 cttttccctg agcaaaatcc ctctcatgaa tcaggcccca cacttgcaac tagtgtgata
      121 ttgctggcca ggtttcaccc cagtaaaatt ctaatctata ctttgtcttg cagaattaag
      181 aagaaaatgc atatcagcag aatctcctct ctactttatt tcatttataa attacgagaa
      241 tgatgctatt atatattatt aatttctgct gttctccaac tcggctgcag cagtgagctg
      301 cggatgttgg aacggtgtaa ttatgttcta gtagggcagc catccgtttc ctttcaaaaa
      361 tttacaggat tcttaatcat gctgctcatt tgggtgcgca gtagcgagga tggcgaaaca
      421 caaacagggc acgttcgttt acacaggaac acctgcttag catgatagca gatgtcagtc
      481 agcaagcaga acacaaaaga aaaatatcaa caacagcaaa ctagaagcat ttttaactca
      541 gtacagagat ctcttgtctg ggggaagcca aaggaagggg atgcaccttt gcaggtcaaa
      601 gcagaggtgc ggtgatgatt tggaaagtct cagccaatct ttggggtcaa caaatccaag
      661 acaaactact cactggatga tgggata
//
LOCUS       KCLJ01002321             352 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 259261cal ultra-conserved element locus
            uce-1393, sequence.
ACCESSION   KCLJ01002321
VERSION     KCLJ01002321.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 352)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 352)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..352
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="259261cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>352
                     /note="ultra-conserved element locus uce-1393"
BASE COUNT          102 a           68 c           93 g           89 t
ORIGIN      
        1 cctaggtaga ccaggttgtc caattgttct ctggtgaggt ggatgttata tgtgggccct
       61 ctcttttgac ctgttgactg cagcaaatgg tcaatctcgt cacgcaccgc tgcaagagct
      121 tctgggtgcc gcagaagata atacatggcc cagaatgtag ctggaatcgt gtttcccaca
      181 gaggcccaca ggaaggcaaa atgatgtgct gggagaaaat aagtgaaaag gaagattaat
      241 agcgtttatt acactgatta gatttgcagt gtgctaatta aaagatgtta ggacacagac
      301 ccagccaagg atcagtgaat gctaatgagg accaataggc ttctgaagtc ta
//
LOCUS       KCLJ01002322             353 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 259355cal ultra-conserved element locus
            uce-4169, sequence.
ACCESSION   KCLJ01002322
VERSION     KCLJ01002322.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 353)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 353)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..353
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="259355cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>353
                     /note="ultra-conserved element locus uce-4169"
BASE COUNT          137 a           68 c           72 g           76 t
ORIGIN      
        1 aattgttagc ccaacaccca cacaatctgt acaagctaca gcaaaatgaa tacacccagc
       61 agagccctta tctgttgtgg caccaacaga aaggggactg gccaatttac cttcatcagc
      121 ctcaatagcc tcaacagtag ctgaagagaa gaaaggggta gcaaaacgaa tgagaaaaat
      181 gagcagagga tttcaactct aagaacaagt cagtgaatag caaaggagct acactaatgt
      241 tactgtaagt gctggatttt ggcaaaacag acacacagag aaatgtttag acaaaaacaa
      301 taatttgcag attgaattaa gctagagttt gttttaaagc agaagtttca caa
//
LOCUS       KCLJ01002323             482 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 259458cal ultra-conserved element locus
            uce-5640, sequence.
ACCESSION   KCLJ01002323
VERSION     KCLJ01002323.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 482)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 482)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..482
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="259458cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>482
                     /note="ultra-conserved element locus uce-5640"
BASE COUNT          122 a          133 c          135 g           92 t
ORIGIN      
        1 agaggtcccg ccatgaccat gtatcttgac ggagtgaaag caaaacactc ggcgatgcca
       61 ttaccatttc tcagtcacaa gggattaaaa ggctcgcacc cggggcagat gctgggagag
      121 ccctcggcag agcagctcac cgcccgccca ggctgcagct gcgagggatt gacaccgctg
      181 acggtggagc ccggctcggg agaaactccg ggcacagttc cggcatccga aataaattaa
      241 agtaaacagt gttgctctct ctcatccacc ctgttagcag cctctcggtt gagctggaga
      301 ccacacaccc agaccacaca gcaccagctg aactcactcg cacgcaacat ctagaagctg
      361 tcactctgct ggggtatggg gagggggggg ccggagtgcg agaaaagctg cttgctctct
      421 cctcctatca ttacagctgg ttatgttttg tgtgaaagaa ggaagggata aggacctata
      481 aa
//
LOCUS       KCLJ01002324             554 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 259564cal ultra-conserved element locus
            uce-2893, sequence.
ACCESSION   KCLJ01002324
VERSION     KCLJ01002324.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 554)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 554)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..554
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="259564cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>554
                     /note="ultra-conserved element locus uce-2893"
BASE COUNT          169 a          112 c           71 g          202 t
ORIGIN      
        1 actattatta ttattattag tttgtgtact tttactgcta tttttagtag ggaaaagtct
       61 taactgtttt tataatttga gaacatttaa tgaaaatgta aatattaata ctataattat
      121 ttttttgtaa cttgcatgtt gaagaagttg cagcttaggg tttgtgagat tgtcaatgtt
      181 agagttctgt tctttctttt tgttgatggg catgaatatg ctcatttgtt tttgtatatt
      241 gcccatccct tccttacagc cagaagctct aatgctgcta gatcactccg taccgccctt
      301 acatggacat ggcaactgac ttacacattc actcccatca tcttcatctc ctgtgtagta
      361 cactcataga acactcccac tccatccacc ctaaacattt tttcttccca taagtttccc
      421 ttcaccaccc ctttctttag cattgttaaa attttatgtg cagtcatcca ttccttaaaa
      481 cacacacaca caaaaattat agaaagaaaa tgtttaaaaa aatatatatc aaattgacca
      541 aaaaagcaac aaac
//
LOCUS       KCLJ01002325             410 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 259667cal ultra-conserved element locus
            uce-2041, sequence.
ACCESSION   KCLJ01002325
VERSION     KCLJ01002325.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 410)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 410)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..410
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="259667cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>410
                     /note="ultra-conserved element locus uce-2041"
BASE COUNT          132 a           66 c           80 g          132 t
ORIGIN      
        1 gaattagtca ttctaaatca tgcagctgtg gtcgaaggga gctcttctaa aaatcattaa
       61 acaatcatgt attcctattg atttattcaa aataccttga gggaaagcag attaaacaca
      121 aggtaaaagt aaactaatgc agattaaatg gatgaaggat gggccgatag ttccctaggt
      181 agttttttta ctaatgagag gaaaattata tgtacactat taccagtata aaagggtcta
      241 ttagaggtct tttgcttgac atatttatgt atttcaaata ctaagtagca cagtgaatta
      301 ggtttactct ggacatttgt tatttttatt gcatctccga gtgataaaca gggctttctc
      361 ttgagggcag cacactgctt ttctcaggag ccacaaccct atctgcatag
//
LOCUS       KCLJ01002326             464 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 259768cal ultra-conserved element locus
            uce-3324, sequence.
ACCESSION   KCLJ01002326
VERSION     KCLJ01002326.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 464)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 464)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..464
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="259768cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>464
                     /note="ultra-conserved element locus uce-3324"
BASE COUNT          165 a           79 c           82 g          138 t
ORIGIN      
        1 tatttcaatc aaagtacggt caaattgaac ttaaccacag atgtatgaat acggcagatt
       61 tggtattgat attgattttc cagtaaatca tcttaagttc aaatgatcaa aaatcaagac
      121 aggtcaacat caaagaaaca ggaatattgg catgaaagca agctctcttg attggtacaa
      181 attaaaagat catttattag tgattatgct gtataatact gccagtgcca aatgaatgca
      241 attaagatga aatgggcccc tgcagctaca ggggttaata aagactgaat tcctaatgat
      301 ttttccatta attatgaaga tgtccacaaa acagctttaa caaagctgtg accacctccg
      361 acaaatcttt gtaatctgta taaaatgcct cccttaattg acatgttgtt ggggtaatgt
      421 aaagatttaa cagctctgaa atcattactt gccgaagggt actc
//
LOCUS       KCLJ01002327             470 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 259875cal ultra-conserved element locus
            uce-6334, sequence.
ACCESSION   KCLJ01002327
VERSION     KCLJ01002327.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 470)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 470)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..470
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="259875cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>470
                     /note="ultra-conserved element locus uce-6334"
BASE COUNT          158 a           86 c           73 g          153 t
ORIGIN      
        1 aaaacacttt tcccctagta aggaagtctg ataaaaagcg ttctttcatc tagcatttga
       61 tactcaaatg cactttccca ttcacagttg gatggagatt ttttttcaag ttcaacccta
      121 atttatttat cttaaagcag gcaatgtact gtaattttac aataaaggac tcccaatcaa
      181 agcttacctt atccagaggt aattaataca aagattgttg aattaaagat gtgagtcttg
      241 acactttggc ggggggtaag ggacatggtc tcaaaggcac aaattatgcc tgaaacagac
      301 caattaacac catgtatctt cttttatgtt aacttcaatt aaggtttctt aaaattttta
      361 aagttatttt cttctttaca atctcagaat gtcagaaatg tacatcaaag aaaaacgctt
      421 cagtatgaac accataggta acgctcattt gcacacaaat ctgcatattg
//
LOCUS       KCLJ01002328             484 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 259980cal ultra-conserved element locus
            uce-1653, sequence.
ACCESSION   KCLJ01002328
VERSION     KCLJ01002328.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 484)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 484)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..484
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="259980cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>484
                     /note="ultra-conserved element locus uce-1653"
BASE COUNT          176 a           80 c           85 g          143 t
ORIGIN      
        1 aaaaaaacaa cttactgaat aatatgccaa accacatgtg taaaggaata aaatggaata
       61 gttaacattc agctccatgc cattcatttc cccctaaaat gtaatgataa ttagatgggt
      121 cataaaatgc tcttcttttc attatgactg atgaaatgca ttaaagctga cagggtatta
      181 cctgacagta attaggtttt gtcatgaatt aaattatttg aaagcaggct atctccccaa
      241 tcatgcaatt tacagcaagt ttttttttta atctgtgcta cagaagagag aaagagagat
      301 agaaaatagc agtttttctc ttcataatca tatgaattat tcacagaaaa aaatcgtgca
      361 gatgaagagg cttgccactt aatgtactgc acagatgtga tcatcagcgg ttgccgacaa
      421 tgaaatatac aagtgcacac aaaagtgatc tggtgaacaa gaggtggaat ttaatcatct
      481 tctc
//
LOCUS       KCLJ01002329             640 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 260087cal ultra-conserved element locus
            uce-7215, sequence.
ACCESSION   KCLJ01002329
VERSION     KCLJ01002329.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 640)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 640)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..640
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="260087cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>640
                     /note="ultra-conserved element locus uce-7215"
BASE COUNT          163 a          131 c          136 g          210 t
ORIGIN      
        1 aacaaatgtc atgcattttt aactcgtgag cacaagaggc agcggaaatg taagctgggc
       61 tgtgatttca gggaaggtat ctgtgaatgc agaaaatatg cagaagagca actgattttc
      121 atttgctgtc ttagcagaac gatgttctct gtattctcaa caataaaagc aacagcaagg
      181 aaaataagtc agctcccctc tgcccaagcc attatttcaa gtttctcagt attaaatcta
      241 aaggttcatc aactcacatc tttacagctc tgtctttctg tatacaggac cctgtctgcc
      301 tgtttcctct attgcactat tttgtttgta ctactgtaat cattttgctg gcccagatct
      361 gtgtgggtgt gctggcagct ttacaacaaa gttacatggg aactgagtta aggttgaata
      421 tttattagaa gaagccatct ggcgtcaggc tgtctgtacg gggggcttat ttctttagta
      481 gtctctcctt tttctctcta gctcttccgt ttctcattta cgtgctgtga aaagtggaac
      541 acacatcttg acatattgat ttgattcttg atatttatag caattaacgc tcatgtgact
      601 gtcgcctcag ttcccatggt ggcagggatg ctgcagggct
//
LOCUS       KCLJ01002330             471 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 260195cal ultra-conserved element locus
            uce-2297, sequence.
ACCESSION   KCLJ01002330
VERSION     KCLJ01002330.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 471)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 471)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..471
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="260195cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>471
                     /note="ultra-conserved element locus uce-2297"
BASE COUNT          145 a           77 c           89 g          160 t
ORIGIN      
        1 ctttttggct attaaaggct cattaaaaaa attaaagtcc ccacaattta caatattttc
       61 cattgaaata gcatgttaac acatttcttt aatcagtgtg taactgtcag gggaaagaac
      121 aattcatcta gtatatgcat acattaggaa aaaaaattat cagatttaat tttatttgtt
      181 ttatattcag ggcgaaggaa ttcctgcagg gaaatggtta atctattttt aactaaagct
      241 tacttttgta atctatccag tgcttagagt tctgtcattg atctatgatt tatgtgattt
      301 aaaccacctc ttggctgtaa cattggtttc tatccaagat gctgagctga atactaatta
      361 cgagatcaaa tttatgctgt tgggctaagc agctgaagga gctttccatg caggactccc
      421 ttaaaccacg ccaccgttca gcattagtgg aatatttggg agggggatgg g
//
LOCUS       KCLJ01002331             508 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 260303cal ultra-conserved element locus
            uce-2257, sequence.
ACCESSION   KCLJ01002331
VERSION     KCLJ01002331.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 508)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 508)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..508
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="260303cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>508
                     /note="ultra-conserved element locus uce-2257"
BASE COUNT          168 a           83 c          105 g          152 t
ORIGIN      
        1 gagctctatt aagcagtcct gaccagtgcc tacatatata tggcattgtc ccatcatttt
       61 caaatcaaaa ttttttaaac agacaggtaa acagagaggc aaagaattgg ctgttgagaa
      121 ggttcttaga aaattgaaac aggagggaat agcatgcaga gaaaaatgca agttcacata
      181 ccaaagttag aggatttggg attaattgaa atcctcaagt ggtgcatggt aagtgactgc
      241 ctatttagag ccaatagata ggtttccgtg aggttaagga agcgaaaaat cccatacgaa
      301 gctagtgaga tgttaaattc taattagaag tgttaattca tttccaattt catcagtgag
      361 agtgcttttg ttgttctgat tctctttgct acagtgaatc ctaagtatcc taactcattt
      421 tgtcccaata ttatttacca cttctatagg gtataaaaaa gttgactagg actatagaag
      481 cagggattat tacagtggca ccttccac
//
LOCUS       KCLJ01002332             593 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 260413cal ultra-conserved element locus
            uce-1159, sequence.
ACCESSION   KCLJ01002332
VERSION     KCLJ01002332.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 593)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 593)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..593
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="260413cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>593
                     /note="ultra-conserved element locus uce-1159"
BASE COUNT          175 a          115 c          120 g          183 t
ORIGIN      
        1 catctcttca gtctactaat tcattacttt tgtcatctaa ttactccctt tatttgcatt
       61 atttatttcc attaccagca ggttggaagt gcttgaaaca tccagaggga cggaactctt
      121 taaattctct gaagttagga gatggatgtg gcgagagtgt gtagtagagg gaggtagtat
      181 gagtaggaag ctactattga cattgttctg ttgcagcaat tttagatgga caaattgcag
      241 ttgagaaaat ttcatgactc ggtaaaatga gcaatgatga catctgtgga tgcaggtctg
      301 ttcatatctt tgcagagcct ttagggaaat aaatatctcg gaacattcgg tgaagtgaag
      361 ctcactcaat aaatcaacct gacacaataa cacttctggc acatgagctc tacttctcct
      421 cagcaccacc tacccctctg tgttcctgtg ctaccaaatg gtgtctcccc acaggcctct
      481 aaatcaaatc agagcacaca aatacagtga gaatttattg ggaattggtt ttgttcggca
      541 aaaacattac ttattagatg aactgaaatg ataaattttg accctttaag tgc
//
LOCUS       KCLJ01002333             541 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 260524cal ultra-conserved element locus
            uce-3486, sequence.
ACCESSION   KCLJ01002333
VERSION     KCLJ01002333.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 541)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 541)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..541
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="260524cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>541
                     /note="ultra-conserved element locus uce-3486"
BASE COUNT          163 a          111 c           99 g          168 t
ORIGIN      
        1 cccctgcctt tacaaatact taggagagaa gagcgccctg tgctttaaag gatatacaat
       61 caggaaataa aatgagatgt tagctctctt ccacctaatc cttcgccatc ccttcaaaat
      121 tactgttgac taacaagttg tgtctctttt ctctgaggca gtgggtgcaa gacaactact
      181 tgagacaaga gaggaacatt tatcctccag gcttctcata cttactcaag cagaaagact
      241 ctgcatgggg agaaggttct ttacagcatt ccacattttt aatgagcttc cttgcaaagg
      301 gtatgggctt tccctttttt cagctaaagc ttctactcaa agagggattt gttctcatta
      361 agaagggaat gttaagggat gatagtttaa ggtgttcgca tactgctgtt taatcacctt
      421 tatgacaaag attaaactat acaaaaaact accccatatt agacagccta ccaaatacaa
      481 gtttgcagtg catttttttt aatctcttgt taattagaac cctttgaaga gtcaatgtca
      541 t
//
LOCUS       KCLJ01002334             578 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 260637cal ultra-conserved element locus
            uce-7895, sequence.
ACCESSION   KCLJ01002334
VERSION     KCLJ01002334.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 578)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 578)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..578
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="260637cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>578
                     /note="ultra-conserved element locus uce-7895"
BASE COUNT          156 a           95 c          102 g          225 t
ORIGIN      
        1 aaatttcaat tgagaaaaaa caaatgtggc tcttttctgt caatattttc tgtctccgtg
       61 ggttttgtgt taaactcctg tacacaggga ctgtgtgtta ttgataatgt gggactggac
      121 ttggtggatt ttaatgtcca tgtttatatg gaacattttt gaagcagcaa ttaaaataat
      181 taaggagggt gaagaaatct ttagcatgca acaaagattt ctgcaaaatg ttaatttctg
      241 tcaaataagt gaatatatgc acagatgcct cctgacagag gctgtgattt ctgagtgctt
      301 tgcatgccaa ataacttgtt taccccctca atgtttgcca agtttactgt caatttacaa
      361 ataatttcca ttttgctgtt tattctgctg ccttttgatg gatatgtctt ccagactttt
      421 atcttgcatg tagacaaact aattaatatt ttcccttcag gcaaatattt ttttcttaga
      481 tctaaatgtg ggttagattc ttcttcgttt ccatatgctt tgttctgtca atcacttctc
      541 ttctatgtta ctaaaaatgt acctttgtgg atgtcatt
//
LOCUS       KCLJ01002335             585 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 260744cal ultra-conserved element locus
            uce-1642, sequence.
ACCESSION   KCLJ01002335
VERSION     KCLJ01002335.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 585)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 585)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..585
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="260744cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>585
                     /note="ultra-conserved element locus uce-1642"
BASE COUNT          185 a          117 c           89 g          194 t
ORIGIN      
        1 aatcatcttg cattaaccac tcaaaaaagc attttatact tgtttacatt ttagtgctac
       61 tccatgactg tatatctaag aaaaggaaaa aagtgctgtt tgcattgata tgctcaagtc
      121 ttagaaaccc attcaattta tctatgcagc ttttattaga ccagactgta gactacaata
      181 atagtcaatg aggttttgtc ttgattgaat ttttcagtag aacacaaaag aaccttgcca
      241 ttaaaatagt cctttattct cttgtatgaa ggcgaaaggt ttttaaagtg ttgtgatgtt
      301 cagtaatgag cctctatcta aattatcatt ggtgacaaac tcacaaagca cttttcgagg
      361 acacatagtt atgaaatgcc agagctgcca ctttctttcc tgtaattata ggctagcttg
      421 cagcccttca atgatcattt atagaacagc ctccagtgga ttactgagaa cttgaaaaac
      481 acatacatac ctctgccaca tctccctttc ctcgctattg tttaccagtg atatgtaaaa
      541 taatagtgcc tattcattcc ccctacttaa ttatgccaat caaag
//
LOCUS       KCLJ01002336             749 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 260851cal ultra-conserved element locus
            uce-2246, sequence.
ACCESSION   KCLJ01002336
VERSION     KCLJ01002336.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 749)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 749)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..749
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="260851cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>749
                     /note="ultra-conserved element locus uce-2246"
BASE COUNT          196 a          158 c          177 g          218 t
ORIGIN      
        1 ttgctgtctg cttgttaagg tggaggagaa agtgctgctg ggctgtttgc ttgccccctc
       61 tcttgtgctg ctcttctgat ttcaaactct tctgaaataa ctcatcgctg aaccgggacc
      121 tttcctctcc gttggtcagg ccccgtgtca aaacactgcc ggctcctggg aagtcagctc
      181 ggctcaatcc cgaggcttgc cagtgccagt cagctgctgt ttgaactaag tcctgaccac
      241 aaaatcaaaa gtgggtccaa agaaagctgt aaacagtgtg caatgagcca tttgaaggca
      301 gctgatgcct catttggggt gacatgttgt ggctgatgag tgtggatgat gtggggtttt
      361 cgataagtgc ctcatcagta tcctcatcat gatcgtgttg ctcagccacg gcgtgtgccc
      421 tgacttgatt gtaattgcct gaatctgctc ctgctgctca ggagcgcaca gtaatatgca
      481 ataaaacagc aagaagtgaa tgttaaccat ctgagttctg acatggctgc ttgcagttca
      541 agttttccat taaggacaaa aaatctatat agacatacaa atatggatat ataattgcat
      601 gtttagaata attattgttt gtatatgcaa taaactcgtt ttataaataa tgcatgatgg
      661 tgatacatag gtatacatct tcccctgaca cctgtataca aatgaacatc gcatgctgat
      721 ggtgtgaaag cagagggttg aaaagcatc
//
LOCUS       KCLJ01002337             726 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 260962cal ultra-conserved element locus
            uce-6298, sequence.
ACCESSION   KCLJ01002337
VERSION     KCLJ01002337.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 726)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 726)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..726
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="260962cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>726
                     /note="ultra-conserved element locus uce-6298"
BASE COUNT          202 a          139 c          149 g          236 t
ORIGIN      
        1 caaaaaggca gagacggccg gaggctgggc tgggagaagc ccaccgatcc ctgagtcata
       61 aaagcgtaca atgaaagggc tttattgtct ctcgttaagc agttcataag tgaccccgtt
      121 tatttctgaa tagccatgtt ttgatgactt atagtatatg caaaaacaaa ctttcccgcg
      181 gtgttttttt tctccgtcat gcttttcttt tcaaacagcc agatgatttt aaaaagaaaa
      241 acacccagaa atgataaatc gcgtcgcata gctaatggct ggagggcgcg tttaccaatt
      301 cataatcatt tattcttggt gatgtatgac ccttactctt aaatctcaaa agcttctatt
      361 tgaaggtgta aatagctttc ccccttgcag taaaccttac tgcattagca gtgattgatc
      421 tcctgtacaa ttcgtcccag agtgctattt tagaggggga acactggctt ttggagatta
      481 actggggagt ctgttacata ttaatgaacc taggagatat actaacgttt tggtaattta
      541 gttatttgtg tctatagctt tcgccgttat tttctcttag acccccgcgg ttgttataca
      601 tcgaattaaa aagtggtcct tcagcatcat tttttcagtg gcaactaaat gccatttaat
      661 gtgaaaaaca aatgttgact tgtctcttga aggaagtgtg tttcttggca agacatcaaa
      721 gtgttt
//
LOCUS       KCLJ01002338             521 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 261071cal ultra-conserved element locus
            uce-6280, sequence.
ACCESSION   KCLJ01002338
VERSION     KCLJ01002338.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 521)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 521)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..521
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="261071cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>521
                     /note="ultra-conserved element locus uce-6280"
BASE COUNT          191 a           74 c           95 g          161 t
ORIGIN      
        1 tgtttatttt gaatttatga tcaaggtgct gtagatcaca tcagtgtata ggaatagata
       61 aaactgtgct acattgaact tcaaatagaa atactaaaga aaatgctgca gcatgatcca
      121 actatcaaac aaatcaaatc tatgtttcgt gtgagaaaat acaatgaagt ccaaatatta
      181 tggggaaaaa aaggcatttt tgtttcacta aggtgtacat gttaaataat caaaggattc
      241 aacatgacaa tatggttata gatagttatc ttaagtgcct tctgtggtga ggaaccgaaa
      301 ttaagaactt gaacaaaaca tgatacatga aagtgcaggt tctacaaaca ctgggttgct
      361 tattaaaact actttgatcc ctcgtttctt tgatatccta ggtcttataa agaattcact
      421 ttcaggggta aatataggta gttcagagag actttatgac atactgtaca tactgagaga
      481 cactttttaa ttacttaatg cagcaagaga aaaatgctga t
//
LOCUS       KCLJ01002339             669 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 261177cal ultra-conserved element locus
            uce-5573, sequence.
ACCESSION   KCLJ01002339
VERSION     KCLJ01002339.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 669)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 669)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..669
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="261177cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>669
                     /note="ultra-conserved element locus uce-5573"
BASE COUNT          208 a          108 c          117 g          236 t
ORIGIN      
        1 gagaatactg acacgtcaat accataatcc atatttttat tttcatcctt ccagcatttt
       61 aaaggttaat tatgctttcc tgacttgtag cttccttttt ggctgtgata cacagtgcca
      121 gaaccatgta gaataaatgg ccaattttgt ccattgtaca caaatttgtt acaaataact
      181 gagctgggaa tgcattaggc aacattcata atatataacc cacagctttc gtttttatga
      241 tttagtgata tttcaagata tttgtaaatg tgaagattgt ttctgccata tgtagccact
      301 tcattttaat ttgccagtgt cagtaattca ggagaataaa ggaacatttt gtactgcatg
      361 caaacagatc ctcaggtgct tgcgataaaa cttaatagcc accatcttta cttgtagtca
      421 ttgtaagcaa tttcatcaga atgggcaata ttttttaatt taaaagattc aggagattta
      481 gcaactctgt attgccatat atatttagaa tactgatttt gtcagttttg agcttataaa
      541 tcttggtcct ttgatctcca gtcattttga caagacagaa aatagcatct tggagtaaat
      601 tggaacagta tagaaatacg tttgggattt atattaacaa tgattgctgc agggatgagg
      661 ccattatgg
//
LOCUS       KCLJ01002340             636 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 261287cal ultra-conserved element locus
            uce-1746, sequence.
ACCESSION   KCLJ01002340
VERSION     KCLJ01002340.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 636)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 636)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..636
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="261287cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>636
                     /note="ultra-conserved element locus uce-1746"
BASE COUNT          210 a          116 c          116 g          194 t
ORIGIN      
        1 atccaaaaat gagatgcagc atatttacat ttttatttga tgaagcctgt tcctgctatc
       61 tttgttctta atttggtctc aaaagaatta gtagtaagag gaaaaatagt ctgtaaatat
      121 gtatgaaatc aaatttagag ggtaggctaa aaggtattga ctgccagcag cgctgaacag
      181 caggaggcaa aatttcctcc atagttttct tcttggctgg aaacacactg ccttccatct
      241 agattattta atcctcaaaa tgcacatcaa agcttctcat cgggtggtgt atgtctttac
      301 aggcagttga atgtcaaaga tctagcttaa agaaaaaatg taaaacataa tagatcccag
      361 ataataacac agcagtgaag ctcctttact attccttcca gcaaaggact ggtattggag
      421 gttgtagcta atccttgtgg caaaagagca aatttcctac gtgacaattt gtgacatccc
      481 tgatagaaat aaaatgatcg agtcatgtta ctggactaat attagcttgt taacaattcc
      541 cttctctctt tacacttgtg gcttgccaga acaataagct atgagttatc tcattcctcc
      601 agcccaattg aaaaatgaat gcaaaatatg tatgaa
//
LOCUS       KCLJ01002341             610 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 261399cal ultra-conserved element locus
            uce-2960, sequence.
ACCESSION   KCLJ01002341
VERSION     KCLJ01002341.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 610)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 610)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..610
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="261399cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>610
                     /note="ultra-conserved element locus uce-2960"
BASE COUNT          202 a           98 c          102 g          208 t
ORIGIN      
        1 ataaaattca actgggattt ataccagcaa aaccattttc cccattatat tcgggttatt
       61 taaaaatagt tcaaaagaca tgacgttttc ttaatcttaa taatactgcg gttctcctgc
      121 aaagctttct gtcataatac caagctccat tttgcattat ttcacctagt agccagttca
      181 ggttctcttt acctggtatg gtgtacttca ctgaattgtt ttgtcagatg ctgtcaagcc
      241 aacctaccat tgttaaagaa aatcaaacta aatcattttg gcatgagcct tccaggaata
      301 aggcacagaa tatgaagggt ttgatgaaat caaggatttg atttcaatat tgtaaaagac
      361 tgcctgtcaa aaatgtatta cattctttca aacaattttg aataaatata cgtgttttaa
      421 atcgtgacag tacaatttag ctaaagtttt gggagagtat ttttaaatta taataacttg
      481 aggtgaaaca atacttggag agctcctatt tgaactctct gaatcttagt ggtacactgg
      541 actgaaatca agtgatcaat tttatggaat ttcagaacat atcctgtgtg aggaagaatt
      601 taatttgaaa
//
LOCUS       KCLJ01002342             633 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 261607cal ultra-conserved element locus
            uce-7202, sequence.
ACCESSION   KCLJ01002342
VERSION     KCLJ01002342.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 633)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 633)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..633
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="261607cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>633
                     /note="ultra-conserved element locus uce-7202"
BASE COUNT          178 a          120 c          135 g          200 t
ORIGIN      
        1 gggtgaaatg attttcctcg tggtttatta tatgatccct gctgaaatgc atttctctga
       61 caagggcatg aagcttcctt tcagaggcac agacagtgct gctgtggcct ccacactttc
      121 atcagtctaa attatttgat acaatttaat tagtctaatc aaaaggctca gcagttcttg
      181 taactctgct caagaaagag gaaaggcagt gctttgttta cttccaatgt tgttcccaac
      241 gcatgaagac acaccaaaat aactgctgtt tattttacaa gatggaaaaa atattgaacg
      301 ccctctggtt atagaagcca ttttcttttg ggattacaag tgcagagatg aattaggtac
      361 acttaggatc aatatctgtt tctcttctcg gctcaagatg ggatttgtca aaattcgaga
      421 gcagcttctg ttgagtgtca gctacaaatc cttccagtac tgagtcatat actcattgaa
      481 agttgaaata taaatggcaa agggcttttt cagctacaat gtccgaggtc agaatggtag
      541 atcacctctt tttaatgagc tttggtttga tgaagtgacc ttgcaggtct ggaatctaag
      601 gacgtaacgg gtctttacaa gccctggctg tgt
//
LOCUS       KCLJ01002343             394 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 261718cal ultra-conserved element locus
            uce-6461, sequence.
ACCESSION   KCLJ01002343
VERSION     KCLJ01002343.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 394)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 394)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..394
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="261718cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>394
                     /note="ultra-conserved element locus uce-6461"
BASE COUNT           87 a          127 c          101 g           79 t
ORIGIN      
        1 atggcggcgc ggccccggcg ctgcgccctc cccggccaat gggagccggc gctggctctc
       61 gttaatgatg cagcagtcca gggaagacta tcacatgtga gctggccgcc tgccagcatg
      121 gagacaccga gagagcaagg taaacaactt tccaacgcca aaatgatgac atttaatccc
      181 taaatgctgg cttcccggct cgactcatct ttaacccctt tcagctggtg tggaagcgtc
      241 tggaaggcac ccgtctacct gtccccagtg cttttaaaaa ctggacgacg tgccctgcaa
      301 tgatcactgc gtcaccgttt gccactttgc gaactacgca gtgacaaacc tccgagctcc
      361 gaatcgcagg gcgcctgtta acccctgcac cagc
//
LOCUS       KCLJ01002344             512 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 261817cal ultra-conserved element locus
            uce-4305, sequence.
ACCESSION   KCLJ01002344
VERSION     KCLJ01002344.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 512)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 512)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..512
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="261817cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>512
                     /note="ultra-conserved element locus uce-4305"
BASE COUNT          177 a           54 c          103 g          178 t
ORIGIN      
        1 tggaatgcaa gaatgttatt ttccatttgc tggtggaact ccttggggtt gtaaagaaga
       61 aaaaatgttt tagagatcta aatataaaaa aatgcaattt taacatattg tgtcattaag
      121 aaatttagaa gcttttagac agattgtgaa ggtagcagaa aatgagatgc agtgttgcat
      181 tagatatgtt tttagtattt tcttcttttt gtaaaagctg taattttcgg agtttagaac
      241 caatttaatg tccctggagc tagagctttt ttgtatccat tgtccattag gtgaattgct
      301 aagccaagaa tggaatccat ttataatgta taaaatatag taaaatgctt taaaaacagt
      361 ctaggtaggg aagaaacgcc aggagtccat taaatttgaa gatggtgagt tctgaggttc
      421 ctataaccag ataatgtgtt tttctgctta agaggcatta gatataggaa gttttattta
      481 aaagtttgaa ttcaataaaa atttatacag aa
//
LOCUS       KCLJ01002345             750 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 261922cal ultra-conserved element locus
            uce-5980, sequence.
ACCESSION   KCLJ01002345
VERSION     KCLJ01002345.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 750)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 750)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..750
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="261922cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>750
                     /note="ultra-conserved element locus uce-5980"
BASE COUNT          243 a          155 c          143 g          209 t
ORIGIN      
        1 gatttattaa tgacttatta atgcagaaga gtcaaactga actcctgtac aaatcctctg
       61 gtattcaaag gaaataactg ctcatgaggt agttcctgtc ttcagatgtg gatatatagg
      121 caatattaag tatgctgttt aatacggtac acttatactc attaccactc agaataataa
      181 aaacttccca ttttacagtt atttactgct gaacatcagc ccaggtgaaa gaactcccac
      241 ttcactcctg tatataatct caggttctgt cattcacatg tagaaaactc agctctctat
      301 ttagcacagt gttggtgaaa gatagacatt tacagggccc ctctgccctt gagctgttcc
      361 attagtgcat ggaaagcacc ttgcagcctg tgacaagcgc agcagatcgg cactaaatca
      421 aaaatcagtg ccagccaggg atctaagcca ccatgaaggt cacagccatc agctgcatgc
      481 catctcaatc caaacaaaac acactggata cagggggatt ttcactactc acaataggag
      541 acaaacacat catgttagag taatctcctg atagcagcaa aatgggtaac tgacctttta
      601 aatacttttg agtatttaat aaaagtttga agacagggaa aagaggtatt ggtaattttt
      661 gggtgctttt tgtagtgtaa ctgaaacatt ggctctgtgc cacagcaaca caaaatatta
      721 gcaaagaatt tctttcctag agctgggaga
//
LOCUS       KCLJ01002346             611 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 262033cal ultra-conserved element locus
            uce-1381, sequence.
ACCESSION   KCLJ01002346
VERSION     KCLJ01002346.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 611)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 611)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..611
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="262033cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>611
                     /note="ultra-conserved element locus uce-1381"
BASE COUNT          205 a           83 c          111 g          212 t
ORIGIN      
        1 aataccagtc tgaaagtata tattttcagt ggtgcaagga ctgtattttt gtaatgaggc
       61 agtattttct ttccccatgt gaaatgctgg tggaaatcac aataaataaa tgcaatgtca
      121 ggttaaaaaa tgttgtagtt tcatgttgtt ggtttgcaaa ttgaattttt acataaaatt
      181 tacactaaat ggaacctcat tatacaggga tgaggtccag tatgatccaa atcattaaaa
      241 tcactgtact gcttaatgat tcactaagtg gtactgcagt gccataaatt tagtactagt
      301 ttcatgattc aaaacaccag actgagacac cagcaaatcg tatgtggatc attaaattta
      361 caatgaatgt cagagatgaa ataaggggga aaaaacactt tgagagatag ggataatatg
      421 tgctctaagg tgacatccat caagataaat gatcttatac tacttctgct tggataataa
      481 tagggggttg tttttttgtt attcttcatt tcataatttc taaaggagaa agtctaagcc
      541 ttttaagaat taaagtatct gtcattttct gagtaccttg tgatctattt tatttgtatt
      601 tatacaatat a
//
LOCUS       KCLJ01002347             660 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 262143cal ultra-conserved element locus
            uce-5873, sequence.
ACCESSION   KCLJ01002347
VERSION     KCLJ01002347.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 660)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 660)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..660
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="262143cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>660
                     /note="ultra-conserved element locus uce-5873"
BASE COUNT          247 a          106 c          114 g          193 t
ORIGIN      
        1 cttctgctta ttaaggtcac acactcataa acgcattaca tgagcttgaa ataaaaataa
       61 tcatgggcaa ggaatgtatt cctgcacatc aaaacacgcc acttaaagga tgatgccaca
      121 aagacacaaa gcattaaaca ttagcttcag caaagtagct acaagaaatg ccctcagaga
      181 tagaatatct aagaaaaata gtactggcat ctaattacag cagtagagtt tgctgctttt
      241 atctgtaatt ggactgtata gtctttcatt ctaatttact ttacatccaa actgtgataa
      301 tcaagacaag cagaacagaa tggcttgtaa ctggctatac caccgacacc agttaatgcc
      361 taattataac aactaaatta aagaggggac tgtaaggagg ttgagtatca gtttgaagca
      421 tttaattctg tggaaagaaa tagagatttt aaatcctaag tatattatgg ctcattatat
      481 tggtattgct aaacagatta atgaaattaa gtattttgtt ttttaaagaa aagttttatc
      541 atgatgtaaa gatagctttt aatgaaagac tacactagag aaggaaattc acattccaga
      601 ccaatttata aaccaatcta atccagtagg tagaattgac tttcctagga taagaggtgc
//
LOCUS       KCLJ01002348             807 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 262252cal ultra-conserved element locus
            uce-3946, sequence.
ACCESSION   KCLJ01002348
VERSION     KCLJ01002348.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 807)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 807)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..807
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="262252cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>807
                     /note="ultra-conserved element locus uce-3946"
BASE COUNT          235 a          170 c          150 g          252 t
ORIGIN      
        1 tgtacacgga ggggttttca caacaatgaa cagcctaatc agggtgaaga atcctcaact
       61 gaaagctcac aaagaaatgc ctctatcctt tctccatttt ttcaattcta cttttctcga
      121 taggggtgtc tcaccagaga acctgaagag tgaaagattt actgaaatcc atcaaaccca
      181 ggcttgtggt ccaaacccaa gcagctgtca aacccagaga taggaatgta tgctcacttc
      241 tgcctaataa aatttgaatc aaacactttg catctgattc tccatgtgag cttttatgca
      301 aacttctaaa gtgcaaggaa tcctggggtg gaagagctat tctgagagct ttcacatagt
      361 tcatgtaatt agggaaacca cttcctttga ttgtaagtgt tcaaaacagc tgaatttctc
      421 ctttcaaagg actctgtgat ttgggtcatc tcttttactt gctcttttat gtttctcaag
      481 atgagaggtg agactgtaaa gcacattatt tagaaaaaaa aaagattcca ctttttgttt
      541 tagggattga actctgacta ttcaaacgct tgtcatttgg aattctttcc ctccccctgt
      601 ttccttcctt ttctgataag ctcttcctca agcgagcata gcccaaaacg ccaatttaaa
      661 cctaagggaa agctgaaata cggtacataa aggaaaaggg actctcattt tcctttgtgt
      721 ggctgtgctt gaatatgtaa ttatagagga gctctagctg caggatctca gtccccatgt
      781 cacatttact ttttaaatgg ctctaaa
//
LOCUS       KCLJ01002349             476 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 262360cal ultra-conserved element locus
            uce-4580, sequence.
ACCESSION   KCLJ01002349
VERSION     KCLJ01002349.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 476)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 476)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..476
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="262360cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>476
                     /note="ultra-conserved element locus uce-4580"
BASE COUNT          149 a           82 c          106 g          139 t
ORIGIN      
        1 catcactgac taatgaggac tgacctttgc agcaatacat acagtcagtt tattaaagca
       61 gggacagagc aatctctagg cctttggtca atctaggttg cttggggctg aggaatttcc
      121 atttaaaata tctcttcagg tgataaagac tgattcaata gagatcggct aataaagaaa
      181 gtgctggaag ctactattaa attctagctt ctgtcagctt aacagtgaaa acttttaatg
      241 aggaaaccat taaagttgac ctaatgaatc agaaatgctt ttccttgctg gctaattata
      301 gagtgcctag aatatctttc gacatatgta atttagaaaa tacagatcta ttgagtcccc
      361 ctgctctcaa agaaaacctg ttgcatctca tctgggagga ggcagggttt gacctggatt
      421 cactgaggaa atggggtcag atgggctgca tgcagaggat atattaaatt agtggt
//
LOCUS       KCLJ01002350             718 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 262469cal ultra-conserved element locus
            uce-7283, sequence.
ACCESSION   KCLJ01002350
VERSION     KCLJ01002350.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 718)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 718)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..718
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="262469cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>718
                     /note="ultra-conserved element locus uce-7283"
BASE COUNT          231 a          152 c          131 g          204 t
ORIGIN      
        1 aaataccatc agccattaaa attaccagtt gccgctgtaa tcctgaaaac aaaaggaaga
       61 aattattttg cttaaaatac tggtaaaaaa gctgaaagaa taaaattaag ttgacctttt
      121 gatagatgtc tgtttattga tttaaattca ccattttgtg aacaatgtca aagaggtctg
      181 ttagaataga agcatgtata ataacatgag ctaaacaatt tttatttctt tgtgtgtcat
      241 tacagagaga ttgaagcaag cttcacctaa gtgtagtgat gcaaaaaaaa taataatacc
      301 cagtctggat gtgaaaaaaa aacaagagct tcatattaaa gtgccttcta ggtagctgac
      361 atgacgcatc tagtcagacg taaataatga cagacggaaa ctatcatgag gtctgtgaag
      421 catcaacatg ctgccatcat tttctttcta accttgcttt gctagcagct ctcagactta
      481 caggctgaga gatcatttaa aaagcaaatc ctaatgatgc tgcccactgt agcaacagcc
      541 agtgagactg gcatcacctc agctcagttt gggaactcgg ggttgcagcc gtggctggct
      601 cctgacaccc caaaccctcc ctggctccct gcagtctcat gtgcatctca ctgaaaatga
      661 tccaccctcc ttctcccacc ccttgcaaat aagcctttca gttattttct ttattgga
//
LOCUS       KCLJ01002351             490 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 262581cal ultra-conserved element locus
            uce-5157, sequence.
ACCESSION   KCLJ01002351
VERSION     KCLJ01002351.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 490)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 490)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..490
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="262581cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>490
                     /note="ultra-conserved element locus uce-5157"
BASE COUNT          156 a           88 c           80 g          166 t
ORIGIN      
        1 tgtgttagct cagctggcta atgaataatt gccacaatta ccaaatcttt gttttcaatt
       61 ttcagtaagc agagctttag aagaacaaac tgctcttgaa agtttttttc cctgaaagaa
      121 agaaatcctt cctagcaact gcaattatga tactttcatg tcaaatgaat tatattacag
      181 aaaataaatc tttctaagat gcacaagagg gttatctggc tccagtcaga cttatgcatt
      241 actggtttta tatgttgtac tctacttgat taatataggt aatcaaatta tactgccttc
      301 cactgtgctc tcaaattcaa ggctataatg ttttcaatga caaagttcat agagttgtat
      361 aaaaatgtac ctcatgctgt accagccctt tattgctgta gtaaaacacc attttcaatt
      421 tagtaataag tgatataaaa cagagcgtct tgattggcag ggtcgtattc attatgcagt
      481 gccctacgac
//
LOCUS       KCLJ01002352             512 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 262801cal ultra-conserved element locus
            uce-1413, sequence.
ACCESSION   KCLJ01002352
VERSION     KCLJ01002352.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 512)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 512)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..512
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="262801cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>512
                     /note="ultra-conserved element locus uce-1413"
BASE COUNT          202 a           82 c           72 g          156 t
ORIGIN      
        1 ttctttttga agtatgttat ctaaattcaa attttaagaa ggtcattaaa aaaatctgcc
       61 tgtgatttta aaggagaaca aagtggtggc aagaaggtat gatgtgcact aagaacaagt
      121 tattcctccc agatatacac atacgcagac aaaccctgcc atatcatacc atacaaacaa
      181 ttttaattgt gtagttacag tcaataacca ctcctagtca gaacatttct gcataaagaa
      241 aattgtgata cacttataaa aacagccagc tgtaacaaaa taactggtgt tttcatagca
      301 ataaactcat aaaaaagaaa tacaccttta tacagaaaat ttatacagct gtagctttaa
      361 aattgattgt aaaccaaagg aagacacatt gcaaacatca attattttca cattaattgc
      421 ataagtttct aaggtgatct attagtttta tttacctaag cttatttgca tgatagtaaa
      481 aattgcatac aacaataaga gtgaagctta ta
//
LOCUS       KCLJ01002353             581 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 262908cal ultra-conserved element locus
            uce-3244, sequence.
ACCESSION   KCLJ01002353
VERSION     KCLJ01002353.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 581)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 581)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..581
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="262908cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>581
                     /note="ultra-conserved element locus uce-3244"
BASE COUNT          163 a          137 c          111 g          170 t
ORIGIN      
        1 tttgtttcca tcctttctta aagaaaagaa ctttggccca gaagcaaaaa tgtagtaacc
       61 cttgtgtaag cattagttta ttgtgtacca aagaaaatta catccttgag gtcttggaag
      121 gcacagttat acccattttg catatatatt gtgcattact tggggagctg ggtggggaga
      181 aagactgcgt tgtacatatt tgttctggct attgtttatg caggtctgac tgaatgaagg
      241 aacagtgggt atcatttcaa tttctgatgt caacatcaaa ttacttattt aatttcatgc
      301 ctggcgaagc attgtatagc tacacgcaga atcatttcac ttcatttgtt atgctgtgtt
      361 ttcttggcga ttggcttgcc ttccaactga cagctttaat tacgacatga atttgattgc
      421 actgccgagg aattaacata atgcaacaaa gcatttaagc acccaacctt agacacacaa
      481 acacacacat ccccaccctc gcagccacac gcacacacag cccctgctgc tgagcagctc
      541 ctggcaacac aggcacagcc ctgctcctct ccacacactg c
//
LOCUS       KCLJ01002354            1099 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 263013cal ultra-conserved element locus
            uce-1806, sequence.
ACCESSION   KCLJ01002354
VERSION     KCLJ01002354.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 1099)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1099)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1099
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="263013cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>1099
                     /note="ultra-conserved element locus uce-1806"
BASE COUNT          385 a          203 c          175 g          336 t
ORIGIN      
        1 cttgttttcg tagttagttc attacacctc ctcggtgggg tattccccac cagcagaatt
       61 tttcctcatt cttgagcgca ctaagagtgc atgactgttg ccattatgta cctagatgga
      121 tacaaaaatc cttcttagtt ctacgtgaaa ccagtggggt tttcacagcc tgtcagaata
      181 aaaaaatgaa aagataacat cgtcaatgga cctgcaaagg ttgtttcttc ctcaccctgt
      241 ataatgtctc aagctctttt aacttgttgc taaatgttta tctacacatg ctgtcagaaa
      301 taaccttgtt aggaaggtga agttggtgtc tcagcaaatc agacccatgg agtaggcgtt
      361 gagtggcctg tgactcgctt tccttttttc tctttcagca ccatcaaaag gaaaagtgag
      421 aaaaacagca caaacattag ttaaagcctg aagttaatcc catgtcctac aggaataatt
      481 tcattacaat gaaagcagac agacagtatc tgtatttgtt tttaagcagt gataatttat
      541 atccaattaa tatagcctat agctctccca aagatcataa catttaatat ttaattaaat
      601 gattaaaaat tacctgattt accatcactg aagacagatt cttttaaaaa tggctacaaa
      661 tgccttgttc acaaaagact ttattatcta atgatgcata ctgaaaacat acagaaatct
      721 gcatggtcca ctttacatgc agcagaacaa tcttcacttt acaataagta agtgtcaact
      781 gttttatgca agagacaaca ctttaaagtc acatttctta aagaaaagct tcatttacaa
      841 aagaaataaa aggtaaagaa gcaattaccg cttttaaaaa gcagctgctt tgttcaagag
      901 tggaaggttt atgcctgtat tgaaagacaa catgatcaca aataatgaaa acaatgaaca
      961 aatgaaacac ttttagcata aagcagtaca ctttcaaaat gacatacaaa tagttaaaaa
     1021 ttatgttgtc tatctatcct ttagatataa ggtctttcga atgagatccc aacatatgta
     1081 attactaaat gaaaactct
//
LOCUS       KCLJ01002355             652 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 263115cal ultra-conserved element locus
            uce-2997, sequence.
ACCESSION   KCLJ01002355
VERSION     KCLJ01002355.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 652)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 652)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..652
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="263115cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>652
                     /note="ultra-conserved element locus uce-2997"
BASE COUNT          204 a          174 c          106 g          168 t
ORIGIN      
        1 ccatttctgc cacacacctc tgatattctc ccgtttgaac ttcatggtca ctaacaatct
       61 tcagtcctaa aaagaagact gcagtacttc ttttctgatc atgtctgcaa aactcttcat
      121 aaagctgtgt tcatcagttc agcagcagca gttagctgaa accagccagg ccaggaaagt
      181 gacacgaaca ggatgctgct aaacatgcac aactcagaaa cgcacactat attctcttct
      241 gcatgatttg ctgccattta aaagacaata aacagcaact ttagattgct aacaacatgt
      301 catttaaggt ttgctgttgc tcaacatcaa gaaaaatcaa tgccagctct acaggggcag
      361 aaaacccaaa gaactgagct ccatttcagg tctgtttgaa ctcatttcct ttctccatgg
      421 ttgccccctt gtacaccccc tcaggcatcc cctcacagca ggcatgacag cttgacacat
      481 tgacagcttg cactgaatga caactgattt gtacaaattt caagccttat aaatctacct
      541 gtcacaacaa caacataaaa gagcttggac ccagcaggta actcagaaaa agcttcccct
      601 gacagcattt tctgaaaagc aatggcttgc ctcctgccaa aaattccaac ta
//
LOCUS       KCLJ01002356             688 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 263217cal ultra-conserved element locus
            uce-6674, sequence.
ACCESSION   KCLJ01002356
VERSION     KCLJ01002356.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 688)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 688)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..688
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="263217cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>688
                     /note="ultra-conserved element locus uce-6674"
BASE COUNT          227 a          113 c          130 g          218 t
ORIGIN      
        1 tgaggcagaa ttaggagctg cgcctgagac agtaagtttt caagaagctg attttctgaa
       61 ttccccttag aaatgtttta cagtggaaac aggaaagcgg aaacatgctt catatctgac
      121 taaaaataaa ggtactctta aacttgtaaa aggcaacatt tttatttgaa tgatatgaca
      181 gagctgccac aggagtgtta cctgctataa agaaagctta agaattatta cctttattag
      241 accagtgaca ctgagcttta gccatacatt tctaacttct gtccctctac agagacaatt
      301 ttcttttctt aaataaactg tcatgctagt gttaatatat tgttggctcc ctcatactct
      361 gagaatactg ctgatataaa acatgtatat gttagattgg taatagtatc tttagtgtag
      421 ctgactagaa caaatgtgtt tccctcatgg ctgtgctaat gtgataaagg aaaattggct
      481 gttcatcagc ttttggctgg gtaaagacag tagagatgga accacattct tttttatgca
      541 ttaataccac tgagaacttt tcactagtta tatttcatgt gcaggcatgt tgtgcaaaga
      601 tgttgtaaaa catgagataa tgctacaaat aacaaagtag aaaagcctgt atcttttatg
      661 atgataacag tcaaacacca aatgacag
//
LOCUS       KCLJ01002357             477 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 263330cal ultra-conserved element locus
            uce-5356, sequence.
ACCESSION   KCLJ01002357
VERSION     KCLJ01002357.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 477)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 477)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..477
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="263330cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>477
                     /note="ultra-conserved element locus uce-5356"
BASE COUNT          139 a          105 c           78 g          155 t
ORIGIN      
        1 ttgtctttat gcacgtacca tgctgctgac agattgtttt acagtgagac ctcctggtga
       61 gcccctcctg agcttactca tctgctacca aacatgagac agctgacagg tttttaaatt
      121 atgaactcct aagggtcaca ttacttaatt atacagtaca tccagggata cgcacatggg
      181 tcttttatgg taaatgatat gactgtctta aaaactcatt aatatgtcat taaccaagca
      241 gacatttact aattaaacaa ttagcccctc tcttctattc ctttgttcca ctcagagatg
      301 ctcatttact gtgatcccca ctcagatcat tttaatttaa ctcggtatct ataaaacatt
      361 tcctttgctt ttgtctcagt ttgagaaacc aaaacaaagt ctagattccc agcaggtgaa
      421 aatcagcttt atctcatgga agtcaaagga gttatggtga tttactccac ctgagga
//
LOCUS       KCLJ01002358             742 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 263436cal ultra-conserved element locus
            uce-6752, sequence.
ACCESSION   KCLJ01002358
VERSION     KCLJ01002358.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 742)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 742)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..742
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="263436cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>742
                     /note="ultra-conserved element locus uce-6752"
BASE COUNT          190 a          164 c          171 g          217 t
ORIGIN      
        1 cacctttttg aagtgataac tatgtgctca ttttgctttc agtgcagtat catcacaaca
       61 aaggcagata tttagtagag aacaaggaga aggcaccatt ctcagtgtgt aacaggtcct
      121 accattggat gccacagttc gagcctgact ttggaatgtt ttggatcggg ttccgtattg
      181 ccctgacaga tggctggctt ggggtggcag ctcattccag gctccgctct gggacggatg
      241 aaggctcgcc tgggactccg caggggggtt caggcccagg ctaagtctaa atcttggggc
      301 tcctccttca gtttttctcc ttctttgcca actcgttgat agattcttcc agtgctgtca
      361 ttcagtaatc ttctcatccc tgtaatttgt tttttaattt cccggctttc atctcctaat
      421 gaaaacagag ccacagttat cactggaaat tagcaaaaac agtaatggta gcaattagtt
      481 ttagatgcca acaagagttg gagcaaggag aaagaattga atggtcgttg ggatgtacca
      541 ggctatgcct tcacacagcc atggctgaca gctctcgtgc ctgaaagacc tgctgaactt
      601 ggctttctta atgctgtttc tttgatgagt aagatcccag aaggaaataa cagccacagc
      661 aatttcataa actgtccttt taagagactg atcctattca ggcattgaca tcactggata
      721 ttttctgagt aaagcccaaa gg
//
LOCUS       KCLJ01002359             753 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 263547cal ultra-conserved element locus
            uce-4844, sequence.
ACCESSION   KCLJ01002359
VERSION     KCLJ01002359.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 753)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 753)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..753
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="263547cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>753
                     /note="ultra-conserved element locus uce-4844"
BASE COUNT          240 a          113 c          182 g          218 t
ORIGIN      
        1 tttggaagga aaatttaggt cttttaagaa gttgggtatt gaaaaataaa tgaaatggct
       61 ttttaagatc acaggatcag tccaatccat gtaaatttta ttacaagact tgggtagcaa
      121 tttgagtgct gctaaaatat taattggata gaaatgaaag ggttctgcta gctgatagga
      181 tatcataatc atagctgcag tagtcgatgg taaatgatga taaatggcat taggaacctt
      241 ttagcaagct gtaataacta cgaggaggga agcagtatgg atttgcatta tatctgatac
      301 cctctagtac caagtggatt gccaatactg cttgtttagc attttctaag ggcaatagga
      361 tattgatttc tgtcttacaa ggaatagctc tattttcacc attgaaaagt attgcaggtt
      421 gttaagaaga aattgacttg aagaggcctg actgctgccc atcatggagc aaataaagca
      481 aaactgccga agcatggtgg agcagtgaga tggggccctc agcaatttgt tgctattaat
      541 ttaccatgct cgacagcaaa tcaatcggca tctacttcat ctgctggaga aaatgctgtc
      601 cagggcagat aaaaggccct ggtggtacgg ggaatagact ggattggcca aacggaggct
      661 gcagttaatg tgtaaataag tgaaatcaag gccactgttg ccgagaaagc tgtttttaat
      721 taggttgggc tttatagtga gctatttaag aaa
//
LOCUS       KCLJ01002360             594 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 263656cal ultra-conserved element locus
            uce-2145, sequence.
ACCESSION   KCLJ01002360
VERSION     KCLJ01002360.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 594)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 594)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..594
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="263656cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>594
                     /note="ultra-conserved element locus uce-2145"
BASE COUNT          188 a          109 c          107 g          190 t
ORIGIN      
        1 atgggagttt aacaaacaaa taccagcccc tgctgagcct tttcagtcca gcagcttatg
       61 ggtgattcag ttgcatcaga ggcttttaga ctgatcaatt cttaatcaca aagcgcaaaa
      121 attattctca gactcatgtc agtttctttg gacacctttg ttaacaatct gcttcaaatc
      181 atttttttaa agaactgcag acactgtttt tattgacttg ccacttgtaa aatgtttata
      241 gcttgttaat ttatatttac ccctttactt ttgcctgcaa atcaacatca cttagcacag
      301 tttggttaca ctttgtccaa aggaaattac agaagcctgc tatggggcta aaatgaagga
      361 aagctgagga aaatcaatac actgatgatt aaacagatcg tagcaaattc acggttgtaa
      421 gctacagcat ggagacatca gtgtgatgcc tatctagcgg ttaatgtcct ttcagccagt
      481 ggaagaaaat tttacaataa ggcaaaatgt aacagaaaaa atagaagcta ctacagagca
      541 attttggtct gtaggaacag tcctgttatt caaattttat tttgttattt gtct
//
LOCUS       KCLJ01002361             497 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 263767cal ultra-conserved element locus
            uce-5114, sequence.
ACCESSION   KCLJ01002361
VERSION     KCLJ01002361.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 497)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 497)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..497
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="263767cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>497
                     /note="ultra-conserved element locus uce-5114"
BASE COUNT          167 a           94 c           87 g          149 t
ORIGIN      
        1 agcctgattg tcaaaaaaaa gcacacagaa agagtcaact agctacaagg aacgaagtaa
       61 gtgatctttt cccattataa tcaggacaca gagcctgtga tatctctgag agctcaatct
      121 aaataaggac tcatcttctc gtctatttca cattatgaat aaaaacatga aattagtttt
      181 atgtcagaag aacaaccctt aagacacttg taacttataa ttataatttc taagctgttt
      241 ggcttgtcag tatcaaggaa ttcacagccc aagacttcca ggactttata ggctgagacg
      301 tgctgtgcta gctactgaaa ttaactatga atttctcatc tgcatcctga tttattaact
      361 acagtgagaa acagaaagtt ttatatgcac agcttgctag aatggaagcc actggctgtt
      421 ctgctcctat tcaataaagt tctagcagtg ggtaaatgta gggtttcttc ctgcaaaaat
      481 tttcttgcaa ataaaca
//
LOCUS       KCLJ01002362             689 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 263878cal ultra-conserved element locus
            uce-1148, sequence.
ACCESSION   KCLJ01002362
VERSION     KCLJ01002362.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 689)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 689)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..689
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="263878cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>689
                     /note="ultra-conserved element locus uce-1148"
BASE COUNT          249 a          144 c          114 g          182 t
ORIGIN      
        1 taacagttgc actgtatgga tgagtggtgc tacagcactt aaaattacac gtgcacaaac
       61 acgatggaaa ttagtattac tgcagatatc aaaagcaaac agacctaatt acagaaataa
      121 ctgcaacaaa cccagatgca acccaaaaca aaaaaggaca actccaaatc taatgaatcc
      181 tttgaatatt aattacagaa ttcctaacaa tacactggga aagctctctt ggagaattca
      241 gtttactgtt taacagtttc tgactaattt tattaacctg tacatctgag aggatcaacc
      301 ccctctgggt ttaattagaa gaaaattcaa tttaaatcta aatgtcaaca gtggttacta
      361 attatggcag ggccctggac gagacatcca gtctgtaatc aggcagttct ctgctaacaa
      421 ttaacagttt ctttctgagt tatgagtgca ttaggatttt cctttttcta aataaatatg
      481 attcagcatg gggcacgact aatattaaca gcacctactg ctacgtgcag acatgcagaa
      541 gaggttgcca aattaaatta cagagatttc tcaaacatat agctgaataa taagcagcta
      601 caaaactagg tcagggtcgc aagcagtcaa ccacagcccc tccccccaac atgcaaaata
      661 aatataccca ctatctctga atagaaatc
//
LOCUS       KCLJ01002363             432 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 263990cal ultra-conserved element locus
            uce-4141, sequence.
ACCESSION   KCLJ01002363
VERSION     KCLJ01002363.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 432)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 432)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..432
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="263990cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>432
                     /note="ultra-conserved element locus uce-4141"
BASE COUNT          161 a           82 c           58 g          131 t
ORIGIN      
        1 tcaaaacatg ataattcctg acagctgctg cttgagcaca agttaaattg aacagtttat
       61 ctcagcataa agatgttata aggttttatg tttaatttaa aaaaattaac ataaaaccca
      121 gagaaagcag agttaggcaa tctttcacaa acatgacata ctacaatcac tgtataagct
      181 ggattagtac ttattaccat gctactagag aattaagctg tttttagacc accaaagagc
      241 tttaaattgc aacttttgtc tctgtaagag aaacctatat ttaaaacgtc tgctaaattc
      301 aaattaacag ctacatcatt aacttaccat ctcacaaaac tattatggtg tccttatcga
      361 gacctatcaa cactgcagca tttaatatat acagtgctct ccaataaata cagtgagtga
      421 atcctcacta aa
//
LOCUS       KCLJ01002364             630 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 264088cal ultra-conserved element locus
            uce-6587, sequence.
ACCESSION   KCLJ01002364
VERSION     KCLJ01002364.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 630)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 630)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..630
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="264088cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>630
                     /note="ultra-conserved element locus uce-6587"
BASE COUNT          194 a          109 c          128 g          199 t
ORIGIN      
        1 gaagggtggt tattccagaa agcttgaggg gggaattccc aacattcgtg aaatattgcc
       61 aacagtgaga ggtgtgaaat ggcaatggga tttttccctg catcagccat ttttatacca
      121 agtttttata tcaggtactt aaaaaaatgt gttagcacat caactcttct gaaaagacta
      181 atttattatc atgtcattat tagcacaatc acagaaaggg tcactggtct ttcctttaat
      241 ttctgtcaca ggctgcaggc cgcattatgc tgaatcaagg atatgggaag ataattaaca
      301 cagcatctat ggcaagttta ataggtgagt gatgagagct aacagttgtg cttcagaatc
      361 catattttaa ttactaccga tgctatttga atcaattaaa cctgtattgg gaaggagtaa
      421 atcactgaca tttcatatta gaggaaatgt actacaaaat ttttattgat ataatttttc
      481 aacatttatc tgtcctcagt gttttagagc acttattact ttttatagaa aaggtggagt
      541 caccttctct gactctggag cagataccac aggagatccc tccatgctgt tccaggcaaa
      601 catgtgggaa gctgaggtgc caatatttgc
//
LOCUS       KCLJ01002365             756 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 264197cal ultra-conserved element locus
            uce-1291, sequence.
ACCESSION   KCLJ01002365
VERSION     KCLJ01002365.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 756)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 756)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..756
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="264197cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>756
                     /note="ultra-conserved element locus uce-1291"
BASE COUNT          204 a          149 c          150 g          253 t
ORIGIN      
        1 atttgcatat tcagaatctg ccttgggttt tcttgttttt attctcattc tttttaaagc
       61 acatttacct ggagaagggc ttagttctat tttctctgca gttgacttta atcctaccaa
      121 aagaattaac actcagaaaa ccttctttgg gtcctacagg gcataagaac atctcaggta
      181 ctggctgctg gtttaataaa aggataggat ttccatttac ttcaggcagg cttaatgtat
      241 tgttcttgta gtgagacagt cagaatgagt caggagccaa agaatacact ttatagacac
      301 aaataatcgt aaattcagaa tgtcaccttt aggcagaggc atttttatta ttgttagtgg
      361 agctgctgag taggtttgat gttttattct cctgagtact aaatgttcca gagtaccaca
      421 gccctatctt tatcaggctc acaaggaggg agcacagcca aacttgcttc ctatacttct
      481 ctatgattga tagcagatgg catgctttaa aataaaccta tccattagca gtcctcagtg
      541 tttttactca aggcatttac aactgtctca accagaaaac acattctctc cacaagctcg
      601 tttcagtctg caacagctgt acaggtgcaa atctttcatt tactcttaaa ccgtggtgaa
      661 ataaatgctg cactgtattt tatttttagt ggaggaggtt gttcttcaga ggcagggtgg
      721 attctcttct ccctttgcat gtggcagggg ttcgtg
//
LOCUS       KCLJ01002366             634 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 264305cal ultra-conserved element locus
            uce-4588, sequence.
ACCESSION   KCLJ01002366
VERSION     KCLJ01002366.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 634)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 634)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..634
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="264305cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>634
                     /note="ultra-conserved element locus uce-4588"
BASE COUNT          202 a          126 c          115 g          191 t
ORIGIN      
        1 tatttccttc agcacaaaca tattttacac caatgtttat agattgcaac actgtgattc
       61 attaacaaat aaagcccatt ttctgtcaca aatgacttaa cattaaaata aattctacct
      121 tccttgtaag ggcatattct tattgacatc tttatgctct gagagattat ttggcaaata
      181 atattgctct ttcagatctc acttctctga ggaaacacta gatcttgtaa cagaaatatc
      241 tttaaatctt ttagatagcc agtccacagg gaaaggttta agaaaggatc aaagcttgtc
      301 ctttcagctt gaattattcc attacagctg aatgtgacat aattacaaaa gatgttggat
      361 gtggaatctc atcaggatta tctgacactc atctttgttg aaaaagtctc cccagctgtt
      421 gctctgatag cacaaatgtg acaggagtgc agaacacaaa agtagctgca agtgactgct
      481 gctttggggc tggtttaggc gccacacagc acactgtgac ttttcagcca cctcaaacac
      541 tgaggcggac tgccttgcag gtgagaggga ataccaagca tgctattgaa tttctaaata
      601 agaaaatttg tttgaagcag cccatagacc aata
//
LOCUS       KCLJ01002367             620 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 264417cal ultra-conserved element locus
            uce-1550, sequence.
ACCESSION   KCLJ01002367
VERSION     KCLJ01002367.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 620)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 620)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..620
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="264417cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>620
                     /note="ultra-conserved element locus uce-1550"
BASE COUNT          218 a          112 c           98 g          192 t
ORIGIN      
        1 catttaaaat ccaactttcc cttctttcat tatcctgggt tgccctaagt accaattaaa
       61 tttctttcaa tggcatgagc taccaatcag aatcactata tatctataga aattgaaatt
      121 gtaatgagtc ttaccagtgt attgctaaca ctttggttca tttgatatga actttgtttt
      181 tttaaagtac cacatggtaa ggctttgaaa cttcagtttg taaaaaaaac tgtaacagcc
      241 ttacagcctt tgaagtcact actgatataa ctctgaacag atccattcaa gttcaactaa
      301 catcagacaa atgtttagtg tatcagagga agccacaaaa gcaaggattt catcaatatt
      361 tcacaacagc ctcagggaaa ctgtagattg caatgctgta gggcagctaa tggaattaca
      421 cacaagggtt ttgtacattt aaaataagca gctactaaaa aaattaccct tcagtttgat
      481 agaaactgta taaaactgca gatgggaaac aattaaatag ctaccaacat ttatccatgt
      541 cagcctgata ggtcatttaa taacaggtat ttctttcccc tggtagggca ataataaaga
      601 ttaacattta tgaaaagtag
//
LOCUS       KCLJ01002368             493 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 264525cal ultra-conserved element locus
            uce-1350, sequence.
ACCESSION   KCLJ01002368
VERSION     KCLJ01002368.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 493)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 493)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..493
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="264525cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>493
                     /note="ultra-conserved element locus uce-1350"
BASE COUNT          182 a           80 c           64 g          167 t
ORIGIN      
        1 aaaagcaagt tctaatactg aagaacaaca tggcataatg ttgtttttca aaacaccccc
       61 agatttgtct ttctttttaa tgttcttcac tttgcttctt agaaaagggg ttaaaattag
      121 taggcacatt tcatattagc gtatttcatg caataaagca taaattattt aaaataacac
      181 gaccttttat cttgcacctt ttgaaggaag caaattaaaa atgtaaattg ggagctaatt
      241 aatatgcaaa tgtattcatt cgcagttaac aattagcaat taaacctgca gtgtctacaa
      301 agagcacgga caaaattagt aacttaattt atcattaaaa aatgaaaacg tacacaaaat
      361 tttaattgac tttcaaaata tttcccctgc tttttccctt tatttttaat acaaaaaatc
      421 atattgagcc ttagatatat agatgaaact tgctacctac agctttctgt tgaagttcat
      481 tacaaaagac tga
//
LOCUS       KCLJ01002369             816 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 264634cal ultra-conserved element locus
            uce-6580, sequence.
ACCESSION   KCLJ01002369
VERSION     KCLJ01002369.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 816)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 816)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..816
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="264634cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>816
                     /note="ultra-conserved element locus uce-6580"
BASE COUNT          232 a          180 c          148 g          256 t
ORIGIN      
        1 tttattacaa aacacacaca catagacaca cgcactgcct gctctctgcc agtagccagt
       61 ttagtgagaa ttcactgcag ttctgtttac aacagccatg gagagaaatc tgcacttatt
      121 tgccactatc ctctacttta aaatgcagaa gtcctgggtt gtgttgtgcc gctctcatct
      181 tatataatga cattaagcag cagcctgcag agagaaccag actcaatgaa aaatgtaata
      241 gcattgtttt ttgttcgtaa tacttatgct attaattaaa cactgactgc tttgtgccaa
      301 ttgacatcat cttctgcatc tagtgcacac aaaaactgtg tctcctaact tgtcttctct
      361 ttttttttcc actttctagt aacggcacaa ctaacaagat gaatggagct ttggatcatt
      421 cagaccaacc agacccagat gccattaaga tgtttgttgg acagattccc cgttcgtggt
      481 cagaaaaaga attaaaagaa ctttttgagc cttatggagc tgtctaccag attaatgttc
      541 ttcgagacag aagtcagaac cctccccaaa gtaaaggtac agtttgcttt cagcccgatg
      601 atcttgcttt ccttcagcat ttccaaagag ggcagctgag ctctcagttt tgtagtatgc
      661 tgtgttgagc tatgcagcag tcctaagagg agaggcctat tgaatgctgc cttcttcctc
      721 ttcttaaact gaagtttaaa tgtcttttat ctgaaagcat gcattccaac tatgcaaaaa
      781 agaaaatatc ggtctccttg tttaaattat cgtttc
//
LOCUS       KCLJ01002370             332 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 264742cal ultra-conserved element locus
            uce-66, sequence.
ACCESSION   KCLJ01002370
VERSION     KCLJ01002370.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 332)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 332)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..332
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="264742cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>332
                     /note="ultra-conserved element locus uce-66"
BASE COUNT          106 a           61 c           46 g          119 t
ORIGIN      
        1 ttaacccgtg cctctgccta ggtatcttca tcggtgtcaa acaaatttgt aggactggtg
       61 attagttgcc caaagagcat aatatatgca ttattaatta tagaaggtaa gtttggctaa
      121 ttgtcatttc tatacagtag cactgcacta cgatacattt taacaatcta taaataattg
      181 ataatttttt ttctttcatc ttcctcccta gtttgcataa aactaatgac ttggtaaatg
      241 ttactcactt caaaatattc cactgctcct atgaaaatta aaccaacact gtaaccttag
      301 caaataagga gatttttcat cttattgtaa gt
//
LOCUS       KCLJ01002371             429 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 264842cal ultra-conserved element locus
            uce-3422, sequence.
ACCESSION   KCLJ01002371
VERSION     KCLJ01002371.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 429)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 429)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..429
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="264842cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>429
                     /note="ultra-conserved element locus uce-3422"
BASE COUNT          125 a          106 c           57 g          141 t
ORIGIN      
        1 aatctgtcct tttagctaat aacatcaaaa tgagaccttt ttcttcactt tgcctggacc
       61 tctaaccttt aaaggtgact tagacagctg cacaaaacct gatctcattt tctgcccctg
      121 gcaagatttt ttcaagttca tcttcttttt ttcccccttc tctcaaaatc tgatgaaaaa
      181 tgaaatgtca tgaaaacagc ctctgaggct aaaaaccctc tgtctgtctc tgtgacagat
      241 gtcagtttga aaggtttcag gtcacctgtc agaactatgt cagtatgatc catacaaaca
      301 tctactcaac ctctaacact aacattgagt tctgcttttt aaaatacccc ttgaaaaaga
      361 atcaaatttc aagtcactgc cttttcccct ttcttttaac tctgattaat gagccaaact
      421 ctcaggcaa
//
LOCUS       KCLJ01002372             700 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 264950cal ultra-conserved element locus
            uce-5609, sequence.
ACCESSION   KCLJ01002372
VERSION     KCLJ01002372.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 700)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 700)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..700
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="264950cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>700
                     /note="ultra-conserved element locus uce-5609"
BASE COUNT          226 a          109 c          113 g          252 t
ORIGIN      
        1 atctttatgt tatagcaaat gaatatttgc agagacaaag tatttgatct gataacttca
       61 cttgaaagaa tcaaggttat tttatgtcaa ttttctcttt gccctataca agatgcattt
      121 aattatttca tgctatctcc ttctattcaa attaatctgc cttatatata ttgttgctca
      181 aattagaata attctttaat cagctgtgtt atgcatgcca tagtaggcta gaataggaaa
      241 gctactccta gcatactggc aatgcatgtt tgtaatttaa aagtaaaatc agaaatattg
      301 atttctactt gactggagag atgatttagt ttgaatatca gactgatctt aatcaggtga
      361 aaattaattg agttggaggt attagatatt cagtgatgtc aattgaacca tgagcaatct
      421 acagagaagc tttcttttgt actgtgttgg aaatatcaaa tagctcgtac tctacaatgt
      481 aaaacaatct cttcatgttc atgctactac ttcctctggc tcattaaatg caccagtaat
      541 ctgttctgtg catactgagt catcttcaaa gtaacaagct aatgaatcat aatttaatac
      601 aaaaaaaagc ataatagcta ctgttgctgg taatgttttg gatcaaaaca taggttttaa
      661 aattttgcct gtttagattt tacagggagc tgtttcctcc
//
LOCUS       KCLJ01002373             457 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 265060cal ultra-conserved element locus
            uce-1694, sequence.
ACCESSION   KCLJ01002373
VERSION     KCLJ01002373.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 457)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 457)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..457
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="265060cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>457
                     /note="ultra-conserved element locus uce-1694"
BASE COUNT          142 a           89 c           78 g          148 t
ORIGIN      
        1 ttacaaatct tatatggctg acacgtctta attcatgaga tcctggtgtg tataattgga
       61 tagaagtatg aacttgatta cactagtgaa cttgctttcc agagggggac aggcttcatt
      121 gtcatcaaag ggtaaagaaa tgtgacaatc tgggagccag ttttaggacc ccatctgcta
      181 aaccagagag aaatcaagat tttacagttc tataaatatt ttagtgtatg ccatcattta
      241 tgaactctgg cagctatcat aaaatctctc tgacttttgt tacaactgca tataaggcca
      301 gaaaattgca tctcatggta aaccataaaa acctaagtaa aagcaccatt cctttcagta
      361 tattctaaaa atatacaacc tccctgtcag tacatggcag ggttgttacc atcccaagat
      421 gcctgtttct ttctcatttt tttttatctg atcttac
//
LOCUS       KCLJ01002374             647 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 265166cal ultra-conserved element locus
            uce-646, sequence.
ACCESSION   KCLJ01002374
VERSION     KCLJ01002374.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 647)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 647)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..647
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="265166cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>647
                     /note="ultra-conserved element locus uce-646"
BASE COUNT          240 a           88 c          122 g          197 t
ORIGIN      
        1 aatcctgtca atgatttctc aggatgaggg atattcttca aaggctgata tgaaatctat
       61 atctttgctt taaaaattca acttttgaga gagtgagcag agattgtatt ttaagaaaaa
      121 ctgaagaaga aaaaaattgt ttcatttaat ctgaattata attgatattt cagaatacat
      181 gtgctcatta ctaagcataa taaaatttgg cattttctat tgtcagagga tttataaagg
      241 ctaaatttct tgatttattt aaatagacag ataggaaaga gcaaactaca aaaacaagtg
      301 ctatatactg aaggcatgtg aattacctcc ttcccaagga taatgcaaat tagaagtatg
      361 taaagctttg tctgcacctg ggatctttaa tgaggataaa gaaaaatcag acggagattc
      421 tcctgggaaa agagaggatc gttatttgaa taacctgcag tgaattctaa tcaatgcaac
      481 gtgactttga aaatgaatat ggtttttcaa cccgctgtac atgagccata atattaatca
      541 taacttcacg gtacagtaaa gcccatgaca aatggttatt cagtggacta acaaaaagac
      601 cattcgtagt aggaggaagg taagggatat atagagtaat ttaatct
//
LOCUS       KCLJ01002375             686 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 265274cal ultra-conserved element locus
            uce-5319, sequence.
ACCESSION   KCLJ01002375
VERSION     KCLJ01002375.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 686)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 686)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..686
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="265274cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>686
                     /note="ultra-conserved element locus uce-5319"
BASE COUNT          180 a          140 c          155 g          211 t
ORIGIN      
        1 catttatgga tttcatctaa attcgcagtg ggaggtggtg ttattttatt tttctaactt
       61 tgtaactgaa atctattcta ccgagaggag ttcataccac agtcctgatt cttagctgct
      121 tgttctttca ttcaatattt ctagcagttt ttctgtgcac aaaattggct cctgtatctg
      181 catttgattc ctgcaggggc agttggagta gttgtctccc tctttctcta gtccaattcc
      241 ctccttcctc tccagacaaa taaatgcctt gaggcaagca gacgtcactg gtgtagtctc
      301 atttgcatgg ggagttgtca ggcctgatct gacctgcctt tccatcagga ttataaaggt
      361 gacggatagt caatttcggg gattcatgat ccattttagc acagcgcttc accttgcagc
      421 taagtaatac ggctgtgata aaatcagcca taatcactgc atcttactca gcactgcttt
      481 ggctgtaaat attgccttca tatattaaaa gaaagaaggg gaaaagagat ctaaagagaa
      541 aaggcctgtt gaccatgact gaccagagtg gtatttcctt atgtaacata acggggaaca
      601 gggcttgcag ctggtgggtt ctaaggagac aatgtaggat gcacaaacct gaagaattgg
      661 gcttcactag caaagctggg catggg
//
LOCUS       KCLJ01002376             685 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 265379cal ultra-conserved element locus
            uce-5806, sequence.
ACCESSION   KCLJ01002376
VERSION     KCLJ01002376.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 685)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 685)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..685
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="265379cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>685
                     /note="ultra-conserved element locus uce-5806"
BASE COUNT          194 a          143 c          150 g          198 t
ORIGIN      
        1 cctgccttac accgcttgcc atgagaagac cttgtcctcg tttttacaag caagtagcag
       61 acctgacctg ttagtccact tatgtaaata ataagtccaa ttccctttgc aagctgctgc
      121 taaagctgtg ccattagagc catcgtgtca tttaggcagt cagtggagaa tcaaagactg
      181 cctgtgctgc agcagcccag tgctacgttt ctaagaaaat gggctcttaa aaaggaaatg
      241 tcacaccgca gtgtgagaga taaacagagg tatatcttta gagcagcagg cagggactgt
      301 agaaacactc tctgtaaatg actttgatcc cctagtgtga tgaatcatgg agtcgcaaat
      361 cctttttagc taattgctat cagcttgtga gatttttcct tccatgttca atatcaattt
      421 tcagggccat aggagatagc acttgtcccc cgagtctgct ggcgacttac cgctaaaact
      481 gaactagcac cacttaacag tttaaagggg gaagtcattt aatatgacac tgctgctggt
      541 aactaaaagg gggggcaaat aaagggaaca gtaaattttt tttactgtca gtgacttgcc
      601 tttggaaatg tcctttccat atccacgtag tatcagtgca tcttttaatt attctaagca
      661 gggacttgga gaatgaaatt tggtt
//
LOCUS       KCLJ01002377             468 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 265489cal ultra-conserved element locus
            uce-3247, sequence.
ACCESSION   KCLJ01002377
VERSION     KCLJ01002377.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 468)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 468)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..468
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="265489cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>468
                     /note="ultra-conserved element locus uce-3247"
BASE COUNT          142 a           71 c          109 g          146 t
ORIGIN      
        1 cactcacagg tatctgcaag cagaaaagat gtgatacgtc agaggagctc tcactgtttg
       61 ccagaggtct taagaggatc ttctatttca ttcagtagta atgccctttt tgttgacaaa
      121 agtaaattga tgacaggcaa gagggaagca tttggtggaa aaattctgtt gacccttctc
      181 agattgaatt tgaccacaga acaggatacc agcagttgta gaaatgatag atttttgtaa
      241 tgaccagcag aatggccttt tggcatgttt aaatggcaat aaatttcact aggaggagag
      301 caatttaact actttagggc agtgaggata ctctttgttt gaggtgtaaa taaattgcgg
      361 ttcattaaca gtgcacatat tacgttcaca gtgtaactct aaagcagagg atgttaatat
      421 ttaatttaat ttaggcaggt atactttgct gtttgaggct tgggcttg
//
LOCUS       KCLJ01002378             499 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 265599cal ultra-conserved element locus
            uce-3625, sequence.
ACCESSION   KCLJ01002378
VERSION     KCLJ01002378.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 499)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 499)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..499
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="265599cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>499
                     /note="ultra-conserved element locus uce-3625"
BASE COUNT          131 a          114 c          115 g          139 t
ORIGIN      
        1 gtaactgtac agattgtaaa gaacacaaag gaggttttgt gtgtgcatgt gagtgagtga
       61 gtccccatct ctcccttttg ttttaacttc cttgcattgg attttatccc atattccact
      121 gcagctcaca attagcagcc aggcctctgg gacctaatta accaattcaa ttaacaaaaa
      181 aagcatacaa gtcaccctga catttgtcag ccattaggag cgatgtcagg ctggtaggtt
      241 ctaccgacac attaatgatg attagctcat ttgcagctca cttttacccc aggtgtccac
      301 ctggagagac tggcacgaaa cactctgcag acagggagag gagctggggc tggggagagc
      361 tttactgaaa ctgtggtgac cctcaaaggg agttttgacc ttttattgaa cgtataatca
      421 ataagatttt tgcctcggtt aagagaagct gctgtcccct catctggctc ctgtgctagc
      481 taaccttcag aggagcgct
//
LOCUS       KCLJ01002379             768 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 265705cal ultra-conserved element locus
            uce-5053, sequence.
ACCESSION   KCLJ01002379
VERSION     KCLJ01002379.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 768)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 768)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..768
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="265705cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>768
                     /note="ultra-conserved element locus uce-5053"
BASE COUNT          233 a          151 c          136 g          248 t
ORIGIN      
        1 gagaaattag agcttttcca gtccagagtt tcactttaca gaagtacttc acaaaaactc
       61 ctttgtaacc acgatggaaa aacctaattt tcaaacacat cacagctcac tgactgtaaa
      121 agtttttgtt ttggttttat attttcttaa agtctttcta gcattggcta ttaaggagtt
      181 ctcacttttt atcactttat aaggctcagt ttatcttttg cttattttct ggagcctgca
      241 ggaagcctct gccatcctaa agaaagtcac acataataga gcagctttag cccagtaagc
      301 cagtcgttcc caattcatca gtcaaagtgt tatgcaagtg gccccctaaa ttgataaatt
      361 cccacagtgc ctgttgaccc agctgccaag tgctcatgca gcaggtggtg ttttcatgac
      421 caccctgaca gtaatacaaa ctgtttagca gttgcattga cctcttagct attaacattg
      481 atacaggctt cactagggac tagttttcaa acatgacaga atttcttaag actagaggtc
      541 atgaacaagt ataccatata agaataaatt tgatatgctg ctgagtttaa atcttaaaag
      601 ccgtgagttt tttccacatt attctcatgt agtaaatctg gagacaagta acgagctttt
      661 ggcatctctc ccaggttttt aattttagaa gctgtacctg aagagatgct gtatttattc
      721 tatgacaagc agtaaattta ggttatgaca aggagtgaaa caaaatta
//
LOCUS       KCLJ01002380             677 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 265817cal ultra-conserved element locus
            uce-6288, sequence.
ACCESSION   KCLJ01002380
VERSION     KCLJ01002380.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 677)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 677)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..677
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="265817cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>677
                     /note="ultra-conserved element locus uce-6288"
BASE COUNT          229 a          120 c          136 g          192 t
ORIGIN      
        1 atgagaattt gagtatactt ctagagacat gggctgattt aaaatctaat gttgacaaag
       61 agaataagat tccagtgtgt aaaagccaca ggtgattctt aataggcagt aaattagcag
      121 aaggaataga aatgctttca gtttttaact tgtgatacaa agaataggaa ggtaattgtg
      181 aattaggatc caaattatgc caggcacaat tgaataagtt ctgacttttc ttactgacag
      241 acatgtatat taatagttgg cacttattga accaaatatg aatattcatc ttcatttata
      301 tttcaaggcc tttcattcct caaggaccac agtgcttttg accaattttc atccacatta
      361 ctaaaatgac agctttcact cctgggccct gacagaggtc tgcagaattc attggaggtc
      421 ctgggaggag ggaaccagct cccgctccca gctgtccaca aacactcatt aagagaggca
      481 aatatccagc agaatctctg tgagaatttt taatcacgca aaggctctgc taattaggta
      541 gctgatgggg catagagagc acaaggacga attctttaaa caaaggacta gaaactttaa
      601 gagctttaat tacttgggca cagagttcat ttcagaactt gggagcaaat tattctaata
      661 acaataagac caagtag
//
LOCUS       KCLJ01002381             827 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 265925cal ultra-conserved element locus
            uce-1362, sequence.
ACCESSION   KCLJ01002381
VERSION     KCLJ01002381.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 827)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 827)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..827
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="265925cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>827
                     /note="ultra-conserved element locus uce-1362"
BASE COUNT          239 a          158 c          185 g          245 t
ORIGIN      
        1 cccagactga agcatttgac aggagatgac atgcagtatt ttgtgtacac agcccagcaa
       61 aacactgctg ggaatgagat ataatacatg gagaaatgca ctcccaggga ctaccaagct
      121 acctttagta ccgcctcact cgaggtggaa atcaaacccc tgccaactgg gggaggcttt
      181 ctttgatact gttctgccct gcgctaatta taaaagagta cagacacagc cccaagtgta
      241 tcgaggtggg ggtgggggag aagcgtgtgt ctatgagaag agcacaacta ttttttatgc
      301 tttcaaattc ttaatcctgt ttggagctgt cagtgggggt taatggaagc cttggatagg
      361 agaattccaa tctggttggc agatggatag gttggttata gctgcataac tatgtcttgc
      421 ctgcaggcac aattcagaac actgttaaag caatataaag tctctgtcaa gctgaaccat
      481 ttggatcagt agcaaggaga aataataata aaaaaggagt tcatttctgg gccttgcgtg
      541 tttatgctag tatgcagaaa ctgattaatt gtcatcgtgt gctggtctgc tatacctcgg
      601 atttctactt ctggagtaga ttttgcatgc taatataatc attctccctc ttgagacatt
      661 agcaaataat caaatgaaaa acaggatcat aatttactga gattcgggca attctctatg
      721 caaatttgac ttgttattgc tgctgcctcg ttaatctgaa tgcctttgac aaactccttt
      781 gatttatgaa ctcatgacaa ctccaatgtg tatatatttt gctagat
//
LOCUS       KCLJ01002382             678 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 266034cal ultra-conserved element locus
            uce-2468, sequence.
ACCESSION   KCLJ01002382
VERSION     KCLJ01002382.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 678)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 678)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..678
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="266034cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>678
                     /note="ultra-conserved element locus uce-2468"
BASE COUNT          176 a          121 c          130 g          251 t
ORIGIN      
        1 tttaaaatga gtgaaaggca ttgtttcagc tgctacactt gaaagaaaga caggaacata
       61 catttctgcg ccttgtcatt taagggtggg ataataatat gctattggaa tgtacattcc
      121 agcctcataa gaactgcatc acttttcatt atgatcatcc tcatttcagc agcacttgtg
      181 cattcaacac atgtggttat gatgttatat gggtagaatg attgcatcta ttcacctttc
      241 atttgtgtgt tgatgtggca tttatattaa gtaggagtaa tttttttttc tgattttttt
      301 ttcttgtgtc accagtgcac ctattccatt cttccatcgc tgtgctcctg tgaacatttc
      361 ctgctatgcc aagtttgcag aggccctgat cacctttgtc agtgacagta gtgtcttaca
      421 caggctgatt agtggagtta tgaccagcaa agagattata atgggacttt gcttgttatc
      481 actaggtaat tgtttttctc attactagct ataggaggtt gctaacacac tctaaccaca
      541 ttatgagcaa aaaacctgta gcaacaatcc cttgaaatta ttcaactttt atttgggagc
      601 tgggtattct taagtaatat atggttttgt ttctcttgtt tctatgagat tgcatggctg
      661 ttagccagct ttaatttt
//
LOCUS       KCLJ01002383             686 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 266145cal ultra-conserved element locus
            uce-641, sequence.
ACCESSION   KCLJ01002383
VERSION     KCLJ01002383.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 686)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 686)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..686
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="266145cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>686
                     /note="ultra-conserved element locus uce-641"
BASE COUNT          202 a          162 c          157 g          165 t
ORIGIN      
        1 atgaaacaaa ccaaagagaa acgctgctcc attaaaaagc tgcagaggcc taattagtat
       61 attgggtcat tatgacagcc agctcgtttc attaccctcc taatgcatta tgagctggca
      121 gttaaatact gcccagcgag ctctcccgtg tcgtggtggc cacaccacat ctctcccttc
      181 tcttacctgg agaagggaag aaatggagcc ccaattagaa agctttcagc ccagcaccca
      241 tggaaaagcc aaaagctgat aaaggtcagc gtgaaatttg aatgacaggg ctaaagtctt
      301 ttactcataa ttttgtgttt gcaatagaat tcagagcaat tcacagcctt aaaggcctta
      361 agtgagaaca gcaattaatt gtaatgaata atctgacaaa tctggttgac atatggctgc
      421 taatgccctc ctttctagtg ggagcagtgg agggattaga ttaactcaaa tgaaatctgg
      481 gaccgccatg ccatctgcat gttcagcgag gagcagcgca cgttaaatgg tgagtgggta
      541 gatctgtctt gttcccatcc tccccgagcc ctgggcaggg tgggaattgc agctttatta
      601 ttgcaccagc tgcctgtcaa tccagcaaca ccggggagcc acacgctgca gcctccaaag
      661 ctaatacggc aaaaagctgc taaaaa
//
LOCUS       KCLJ01002384             367 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 266252cal ultra-conserved element locus
            uce-2910, sequence.
ACCESSION   KCLJ01002384
VERSION     KCLJ01002384.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 367)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 367)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..367
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="266252cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>367
                     /note="ultra-conserved element locus uce-2910"
BASE COUNT           96 a           77 c           58 g          136 t
ORIGIN      
        1 gatattgact ttcttctctc ctcaatcctt ctctcaggtt cctttttttc ctctcctatc
       61 atctgcaaat tgcatcattt ttatctttcg ctatgctgga aatcttatca tgaaagagag
      121 acttttcttt tttctttttt taattagtac ttggtaatat taccaagctg tgagtttatg
      181 gctttgtaga tcttatattt ttgacactaa ttactcacaa aggcttttaa agcagcattt
      241 caacatagca attggcatga ctgtaattaa gtaagaagca gcacatttca gaggaagtcg
      301 cattcctgcc ctgtatcaca gctcagcccc tggtattgct ccagtgaacg agaccagatg
      361 ttgaaaa
//
LOCUS       KCLJ01002385             444 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 266353cal ultra-conserved element locus
            uce-7930, sequence.
ACCESSION   KCLJ01002385
VERSION     KCLJ01002385.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 444)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 444)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..444
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="266353cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>444
                     /note="ultra-conserved element locus uce-7930"
BASE COUNT          142 a           67 c          102 g          133 t
ORIGIN      
        1 catcaatcac aacaatgagt tttaagtgtt tgctgggtga gaggagagtc ccataagcag
       61 tctttgaagt gtcttttgct gaaggtaaac atctgaagaa cataaatagc tgctcttctt
      121 tccaatgagt gaccttgtca aagcgtgtag aatggagaga tgggggaggg gtgctatcat
      181 gaaaaggaaa agcaataaag gattccttat gacagcaatt tgcacattta ctgctctttg
      241 atatgttaac tagattttgc aaaatggaat tctttgtctt ttagaggtcc ttgggcagtg
      301 atagctcaca gtcagaacaa tgttttgcaa taggcctaat gcatcttcta attaataagg
      361 taacttgggc aacctctgta aatcagtgac attatcatta taacaggaca caagtgaata
      421 gttgtttata aggaaggaaa gatg
//
LOCUS       KCLJ01002386             712 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 266462cal ultra-conserved element locus
            uce-2138, sequence.
ACCESSION   KCLJ01002386
VERSION     KCLJ01002386.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 712)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 712)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..712
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="266462cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>712
                     /note="ultra-conserved element locus uce-2138"
BASE COUNT          217 a          105 c          134 g          256 t
ORIGIN      
        1 ttacaagaat tatctgttct acatctacct ggagctttta ttttattaca ctttgtgatc
       61 taaaatttgg ctaaaagaaa aaccctcaag gttgacaagg actaggattg acagaactgt
      121 ggctctttga aatccctgtt gtccatttaa attttaatgt ttctatcatt tgttcctcag
      181 tgtaaattaa cagccatggc agtgtgttgg gtttcttttc tgaagtcaag actttaaatt
      241 taattcaata gcctagattt acagctattc tatatttcac aaggcagaat caataatgtg
      301 actgaagtga agaagataaa aatttatggt atcttgcaat ttaatggttg aaaagatgca
      361 attggagaga tcataaattg tgaaggagtt tatgcttcat tgctcctgat tcagtgcttg
      421 ctgttagaac ttgatttgtg actattcaca aggtgtgatt aatggtgtga tcgatgcttg
      481 cttcagtgca gtaaagcagt tgtaatgctc ttcattagaa taaataaaat aaattgactg
      541 aggctttata aaaactgtgt aacatttaaa atctaaaatg tcaatttcct gttacaattt
      601 aggtttcttc aggcagtttc cacctacatc acatcagtca ttgtcattct ttttggatat
      661 tatagaaatc catgtgggtt tgggttagct ttatgcaaag ctcagtgaag gg
//
LOCUS       KCLJ01002387             315 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 266570cal ultra-conserved element locus
            uce-5512, sequence.
ACCESSION   KCLJ01002387
VERSION     KCLJ01002387.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 315)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 315)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..315
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="266570cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>315
                     /note="ultra-conserved element locus uce-5512"
BASE COUNT           80 a           77 c           80 g           78 t
ORIGIN      
        1 aaaaaatatt cttattgcat gcaaaaaaga tacaaaaggt taagcagagc agccggcatc
       61 tgcacactaa tgacatgatt gttatgatag gtgtttgctt taccctggag tggtaacatt
      121 ataattcatc caccgctgaa tgagtgggga caattaatgc agtcaatgtg tcccacgtgt
      181 tccctgcagc attaacaagg cagctccagg cccctcggca tacacggggc tgaaaattga
      241 gccggctctc gcgttgaatg tgatcctgat tgcctccgcg ggggccacct gctgcttcgt
      301 gcctgccggt gcgcg
//
LOCUS       KCLJ01002388             627 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 266677cal ultra-conserved element locus
            uce-918, sequence.
ACCESSION   KCLJ01002388
VERSION     KCLJ01002388.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 627)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 627)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..627
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="266677cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>627
                     /note="ultra-conserved element locus uce-918"
BASE COUNT          189 a          150 c          102 g          186 t
ORIGIN      
        1 caatttcata ctaagcaata acacttcatt ttacataagt tttatctgat gtccccatac
       61 agagctgcca gctgtacagc aaatgtgcag ctctcaaact gaggcctact aggccacagg
      121 ctccatcctg agatctgtaa ggcaccttgc tgtcattggc aagcgttccc tgctatcacc
      181 gctaccatcg ctccacacca cacacaactt aaaatcatct gattattaga atttgtggtc
      241 cacactccat tttatccttt atttaatcta tccccagatc acacatttgt ttaaatgttt
      301 tggctggttt acaaatcatg cagccatctg cacagtaggt gtgacaccat tttttagaca
      361 aaagttacat tacaaaacaa caaagataaa gtcatttgaa atgctttggt gtttgttatt
      421 ctgcctggtt ccaactctaa gaaataaata gaattatctg tgtaaatcga tgaacatcta
      481 tgaaaaacaa cacccagcag aacgcagagc ttgctccatt acctacgtta atatcatgac
      541 agctgaggag agatgacctg gcccacttct catctctcct gtacagatgg ctattaaaga
      601 gaaagtatcc cttttgtatg gtccatg
//
LOCUS       KCLJ01002389             799 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 266787cal ultra-conserved element locus
            uce-6059, sequence.
ACCESSION   KCLJ01002389
VERSION     KCLJ01002389.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 799)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 799)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..799
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="266787cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>799
                     /note="ultra-conserved element locus uce-6059"
BASE COUNT          232 a          127 c          157 g          283 t
ORIGIN      
        1 agttgtagct gttccttact actatcatct ttatctcaaa gctgttcaga agtgaagaga
       61 tgaactttga gtcctcaatt agtaattaat ttgctttcgc tattaacgtg tattgtactt
      121 acagaacagt ttaacataac agaattaatc taagtatgta actactgaag ttgaaaatta
      181 tgtgcagatg ctgtaacttg gaaagtgatt tatgtgttca ctgttaattt gcagttaaat
      241 tctaaatctt catggtcaga aaatctagaa gtggttttaa atggatgatg cgtttttaat
      301 gtttcttctc tccctccaaa gaacagcaat agtagtagat ttaacaatac catagactca
      361 tgactatgaa atcgtggcta tttgtgttaa catgttgttc ctgttgttga tgtgatacaa
      421 agctcctgca aaacagctgg cacagtccag tgcactggct tccctcactg gactcggtaa
      481 gtatgttcct tatttttgag agggcttaaa gggggagttt catttttgcc ttgcatttct
      541 agaaattgca ttttgaaact agattttaat tgcctgggag tatgggtcac tttctgataa
      601 ctttttatca gcacctttca caggtggtcc tactgatata taagtgggat agttgctgga
      661 gtaaaggact aggcagtgtg atgagaatct tgtcctaatt ttgaaaatat gtttttagat
      721 aaaaaagtat gatcagtaca ctgcagcctt caaagaaagg tttcatactt ttcttctgtt
      781 ttgatccata tgaaccaga
//
LOCUS       KCLJ01002390             416 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 266899cal ultra-conserved element locus
            uce-3789, sequence.
ACCESSION   KCLJ01002390
VERSION     KCLJ01002390.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 416)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 416)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..416
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="266899cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>416
                     /note="ultra-conserved element locus uce-3789"
BASE COUNT          133 a           87 c           65 g          131 t
ORIGIN      
        1 ccactgtgtc tatatgtaaa ataaatattt gatcttaact catttttcca gaattaaaat
       61 aaacatccaa aatactgaaa aaataatttt acctgtaaat tgttttctgt gactctgttc
      121 caccaaacca tattgatggg tactcctgtt ttacacctgt cagccagaca gccaataggg
      181 ttctttgatt ttcttgcttt tgatcccacc ggaactatcc tttcatccag cattcccagt
      241 cgatacttcc tgggctatga aaaagaagga gagaaaccag gccactccta acaaccctca
      301 aaagctacac taaaaaagga ctgcacagtg atatgatttt ggattggtgg aataggaaac
      361 aatttgcaag taaaatttaa ctgagactgt ttcctttcaa tcctgactat ttggtt
//
LOCUS       KCLJ01002391             453 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 267011cal ultra-conserved element locus
            uce-2308, sequence.
ACCESSION   KCLJ01002391
VERSION     KCLJ01002391.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 453)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 453)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..453
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="267011cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>453
                     /note="ultra-conserved element locus uce-2308"
BASE COUNT          164 a           64 c           85 g          140 t
ORIGIN      
        1 ttaatataga aattacacag gaacaggtgt gaagatgtca gaaaatttaa agttcggttt
       61 ttttaattgt tattgaatga tcaacatcaa agttaagata aaagtgtaga tgatgagtca
      121 gtttggcata gtgcaaagtt gttaatattt gacaggtctc agtgtcaaag atttcatgga
      181 ctgtcaaaat atgggcaaac aagtccttgg ggcagagaaa gagaaatatt tacattcccc
      241 agacacccag tagagtttca tttcttttga caccttcctt ctgtactaga ttcaaacata
      301 aaagaagtct gacaggaata taagatgcct caaaggcaaa cctatctttc agggaacaat
      361 aaggaaaaac ttttaaacag aggagaaatt ttgatatctt tatgcttctt attagatttt
      421 gaaaagtatt cctctgttaa aactgcatgt aaa
//
LOCUS       KCLJ01002392             423 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 267115cal ultra-conserved element locus
            uce-305, sequence.
ACCESSION   KCLJ01002392
VERSION     KCLJ01002392.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 423)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 423)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..423
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="267115cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>423
                     /note="ultra-conserved element locus uce-305"
BASE COUNT          140 a           82 c           74 g          127 t
ORIGIN      
        1 tacttactgc aagttgtttg aaatgatttt cagtagtgct gtaatatttg tatatctaca
       61 cagtcactat ctattccata tacacaaaca tccgcctacc cagaaaataa ttgtggataa
      121 ttcaatgttc agattcgata atggatgctc aaataaatat gagaattcca agcaaatttg
      181 tgcaaatgaa aaaagatttc ctctgacata atggcatggt gcaaggctgt ctgtaatgag
      241 ctgtaatttg tctggaagag cattttaaag gggttgatcc atccactgga agaccagcaa
      301 ctgctctgag actagaagca atgagccagc ctgcctcgtc tcagaggaaa ttacaccaca
      361 agcaggccaa atttctgaca acttccataa attatttcag attttcatat ttcaaatttc
      421 atc
//
LOCUS       KCLJ01002393             635 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 267222cal ultra-conserved element locus
            uce-3669, sequence.
ACCESSION   KCLJ01002393
VERSION     KCLJ01002393.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 635)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 635)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..635
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="267222cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>635
                     /note="ultra-conserved element locus uce-3669"
BASE COUNT          201 a          135 c          118 g          181 t
ORIGIN      
        1 tattttcaat ggtgaaacat ttgcaaataa acccaggctc cataaacata aatgtcatta
       61 ttcatagctg acacaggtag cctggccatc aatgagggga tgcatgtaaa acatccctga
      121 ttatcaaacc atgtcacatt ccttctattc gatggcactt attgggctgc agattccata
      181 atccttccct gagtcccttc tgcatttaat tcagttcagc cttaagtagt taaagaaact
      241 gttttcagtg gcaactaata actactgacc tacagtgaca ctgccctaca atgggcttgt
      301 caggcctgaa aaacttgtac caaagaagct gattaggact tcaagaggtt tgtagcaaga
      361 atcaatggct ggtctgtgct aatgctgcgg ctgtggcaca ggaatgataa aagtggaaca
      421 ccattagtta tgcctcatta agctccacag ccctcctaaa aagaaatttg tttagcctgt
      481 ccaaaatcta atgcagtttt aagctctctg tgttcaattt catagtatct caaaagcttc
      541 aataagataa aggccaaaga accaagaacg gtaccaaagc accaacagta aagttaattt
      601 tgaagcctga gttttaatgg aaagtgtttt tccct
//
LOCUS       KCLJ01002394             811 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 267332cal ultra-conserved element locus
            uce-7652, sequence.
ACCESSION   KCLJ01002394
VERSION     KCLJ01002394.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 811)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 811)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..811
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="267332cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>811
                     /note="ultra-conserved element locus uce-7652"
BASE COUNT          248 a          138 c          149 g          276 t
ORIGIN      
        1 aaacgtcggg gaagggattt acagcagttt gcctctccag acaaccaagc aggaaaaggt
       61 tctcgctgta ttttattgct gataccttca ttttaagtac tactcagctc aacatatatg
      121 ggtgttaaat atgctagctt aataaaatat ccatctcttc tgtaagcaaa tgcacaattc
      181 ttttagttca gtttttctaa cttcaattct aaatgtcttg gaaaaatcta tgttttggga
      241 ggcagctgga aatgcactat ttgcacactg atctatacta gcagccattc attttctctg
      301 ggaattttca tgtaagctcc cttattggga atatgctaat ggcaaccgcc atgattactg
      361 attttctttg aatcattatt cctctgtggg caaagcaatc agaaagggag aacaggagat
      421 ttacttcttg cttgtgtgcc ttcttcaacc atctgctcta tcctgattca tttgaataag
      481 atctgcagtt ttagattctt tactctggct ttctgaagca ttttaaagct taaaaggagt
      541 taatagttat ctatcagtgt cacaaacgtg gtactgtgat gcattctaag agcaagtttg
      601 ccttccaatg gtttacaggg ccagattaat tttattaaag taaaaaatta caatgttctt
      661 taacagcttc attatttcag acaagtcttt tgtgagcaca tttattatct ggagcgtgga
      721 gtataaaagc tgaaagaaag ggaactaatt tataaagcaa gaacatttta aaaatggaaa
      781 ttgttaatct agagggtaaa attgtgatca a
//
LOCUS       KCLJ01002395             728 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 267444cal ultra-conserved element locus
            uce-1929, sequence.
ACCESSION   KCLJ01002395
VERSION     KCLJ01002395.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 728)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 728)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..728
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="267444cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>728
                     /note="ultra-conserved element locus uce-1929"
BASE COUNT          231 a          120 c          132 g          245 t
ORIGIN      
        1 gggagatttc aatctgcaaa gatctatcaa gcatattaca tgcagggagt tttgtttgtt
       61 ttgttaaata aatgcctgta ttcttctctg cactataaac acatcagtgc tcattttctc
      121 tatattctac tttgggccat tctgtgtaaa atctttaatt aaagtttttc tttgaaattg
      181 tcatcatcaa accagaagaa agaaagtaaa aaatggaagg acacagctgt gcatatatga
      241 agtgctattc agtaccaaat gaattggaac aaaataagta tcgtgactgt tatgctctta
      301 gttttggctc tgtattctca gtagcacagt ctaacttgtc actttatatt gattccatct
      361 gtttacactc tgcagagtat tggcttccta cagtgaacat ttcctattta ccagctggta
      421 aagataggcc caaaccagat agaaaagaat tagactattt tcagagcctc ataaacataa
      481 aatcaaaaat taatggggga ggggagaagg gagggagtag aatatatggg tctgatgctt
      541 gtttcatatt gatagtcaat ccattaacaa tttttagaga ccttgaaatt tgtgcaatga
      601 gcatgctttt cactcctctt tactttcttc tttacatgaa cagcctgatt gtaaatgtga
      661 atcaatcaca gtacttcagt aatctttaaa tagaaacagt tggggtctga atggctaata
      721 tagtattc
//
LOCUS       KCLJ01002396             600 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 267553cal ultra-conserved element locus
            uce-6167, sequence.
ACCESSION   KCLJ01002396
VERSION     KCLJ01002396.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 600)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 600)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..600
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="267553cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>600
                     /note="ultra-conserved element locus uce-6167"
BASE COUNT          173 a          107 c          123 g          197 t
ORIGIN      
        1 aaatttagca gagctagtct taattttcac tggtttgtaa aaaccataat tgtcagtcat
       61 tactgtagag aaacaaattg cacttctttc ttaagtctct gtttgtttaa accctgtatg
      121 gttgcattta actttggatt aggtagggta agagtttact gagaagctgt atttgtacag
      181 agcccacctc ctgtagtgtg agcagtggta agtgaactgt ttctgtgttg ttcactcact
      241 ctgtcagatc gaaattcagc tcaatagcat taaactagct cccatttgaa agatttgtct
      301 tacaaaaccc tgaaaactgc tctgaacatg catacattga ttttgttgct ggaatctcct
      361 gagctttgat aaaaaggaga ctccacatgc aggtgaaaga gggtttacct cttcaatatt
      421 aaaaagagaa gattaaggat ttttgctcag ctaaggctga actaatcagt ggcatatgaa
      481 ggcaagagac ctggcctcat gcctatagta tggtaatgtt atttttagtt gaacgacttt
      541 cttcagtagc tctgtctacc gttgttccca tttgcacagg taatagaata tccagaggtg
//
LOCUS       KCLJ01002397             625 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 267664cal ultra-conserved element locus
            uce-1177, sequence.
ACCESSION   KCLJ01002397
VERSION     KCLJ01002397.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 625)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 625)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..625
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="267664cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>625
                     /note="ultra-conserved element locus uce-1177"
BASE COUNT          151 a          172 c          147 g          155 t
ORIGIN      
        1 agcgtgagtt ggtgtagttt ctttgactct aaaatatcat ctgctgaagt agccttcacg
       61 ccagtttaag ccggattgcc ggtgcagcgc cacacgccca gcccacgatg gggacagcgg
      121 agagctccgc gttgggcgtc ccttccctcc gcgcagctcc gccgccgccc ccgcgccgcc
      181 ggtgactcct cctattcctc gtgaggagag ctgcctatct gattttggag ctctggcaaa
      241 aagcctgagc tcattgatta cagatcactg ttaataaaga gcatttgtaa tgcagcagcg
      301 gtgatacaat ctccacacgc cagttcatga tggcccttca gtccccacaa ttaagtcgtc
      361 cagcaggcat gccccctggt acagctgctc tgtcaatctc attttgtact acaaatgatc
      421 ttagacccag tgtttgacat ggggttttaa caccaaagaa ggcaattctg caacttcaaa
      481 tgagcctaat tggttgtgcg ctcaggcgtt cactcaagct gcttcagtcc atcagagaga
      541 gatttccaac taattgaaca gctcagaacg aaaagaacca gggaaatcac aatgcactgg
      601 gctgcttgag acgttttttc atgat
//
LOCUS       KCLJ01002398             691 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 267773cal ultra-conserved element locus
            uce-7288, sequence.
ACCESSION   KCLJ01002398
VERSION     KCLJ01002398.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 691)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 691)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..691
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="267773cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>691
                     /note="ultra-conserved element locus uce-7288"
BASE COUNT          232 a          114 c          127 g          218 t
ORIGIN      
        1 aatgacaaca tttaaaagca atttcaaaat ataagggaaa gagagaaggg atgaagagac
       61 caattaacca atttttcttg gcctttctct cacacgcaga cacattcagt acaaacccct
      121 gttttgatgt attattttaa ttaatcccag tcttttgatt tctacgaagg ttagcaaatg
      181 taacaatgct cgagagtttc tttatcgtaa aagacacata atttcaagca tttaataagg
      241 tagatttatt ctgggtagtt tagtttgcac attcactcaa acagccctcc ccaaagacaa
      301 cattaaaaat gtgattagtt agctgccatc aataacacaa aataggaaaa cactctctga
      361 agggacagct ttgtggaggg cactgcacag tgtgtagtaa aaatatatgg cctaataagt
      421 ttacatttgc aggctcattt gttaaaactc ttgaatttct aatttgtgtc ggaaagataa
      481 atggatgggg cctcagtaaa gtgtgagatt aatactgatg gatggggatt cagatttttg
      541 ctagcctctt acttctgtac aacccagtag gcagtttatg gggaaaacca aatgtaaata
      601 aaaaaagagg acattattta ccttggtcaa ggccaattac cagttatatt gttcttttca
      661 actttattgt ttggatgtaa attatcctta t
//
LOCUS       KCLJ01002399             554 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 267885cal ultra-conserved element locus
            uce-2160, sequence.
ACCESSION   KCLJ01002399
VERSION     KCLJ01002399.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 554)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 554)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..554
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="267885cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>554
                     /note="ultra-conserved element locus uce-2160"
BASE COUNT          180 a          113 c           98 g          163 t
ORIGIN      
        1 ttcaaggcca tatggagtaa tatagctttt cttactgtag taaaagaaca aaacatgtca
       61 ttcctaaatt ctacaagtat ttacactttc aaggttttgt ttctttgctc atatccctgc
      121 aatttaagaa agctatctat ggaagatttg tatttatact acacctattt cttgttgcac
      181 tcttctgggg atgccagaga tggttttcct cctcctcaac tttcgtctcc gctgtagtac
      241 agattgtgaa tgaacaagag agcagcgtat actagcctct ctgtcaaaac caactcctgc
      301 aacccataaa taggtctcat tagcctttag aaatagtaaa caaactttca tggctggaac
      361 acagtggagg tatgtgagct tggattaagc ctgtgaataa acataaggga gcccttatgt
      421 agctcttatg taaattatat cacagtatat cacagtttta cgtctaattc cagctccccc
      481 tcagcagcct ggtctgccaa aaataacaga aggcataaaa agaacagaaa aaggaaagaa
      541 aatcaggaaa gcaa
//
LOCUS       KCLJ01002400             503 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 267996cal ultra-conserved element locus
            uce-2033, sequence.
ACCESSION   KCLJ01002400
VERSION     KCLJ01002400.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 503)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 503)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..503
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="267996cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>503
                     /note="ultra-conserved element locus uce-2033"
BASE COUNT          173 a           92 c           68 g          170 t
ORIGIN      
        1 cccttaaaat aatcctaaaa cacattttgt attttatatc tataatctgt agcccataaa
       61 gattttcaga aacattatta atttgacact gatacgcctc catttctaat atcccaaccc
      121 tgcaacattt taaatgcaat taaaagtggt tatgaaagag tgtggacttc cttgtgaagt
      181 aggaaatcac tcttgtgatt aacatgcaaa cgagctcatg ctggcagaat agattggggt
      241 tttaaaaccc caattacttt tgtatgatta tctatttacc cgtacacaga ctattttcat
      301 ttttcatcta atacaaagtc atcctgctta catttttagc acagcaatta atatttacaa
      361 taattatgac atcaagcacc attgagagta cgccaagtaa atcatttact gtgtatatgt
      421 tattaaaata acatctatgg taatatattg cagaggacgg agatatatta ttggccttta
      481 tacacaatct agcctaatac aac
//
LOCUS       KCLJ01002401             727 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 268108cal ultra-conserved element locus
            uce-6669, sequence.
ACCESSION   KCLJ01002401
VERSION     KCLJ01002401.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 727)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 727)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..727
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="268108cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>727
                     /note="ultra-conserved element locus uce-6669"
BASE COUNT          199 a          169 c          145 g          214 t
ORIGIN      
        1 acagctgctg ttgaaaaggc tttgtccctc ctcagccatt tccagtgtga atggttctga
       61 aactagcaca gacttctgaa cagctttgtt tgtttgcatg atttggaaag gactccactc
      121 cagaaatttt tccaaacaag atgaagggta ttaaatggtt aagactaagt atgtgggcag
      181 ccaacgtatc tgccccttct aagagcaaaa atagcatgta acttattaaa agcagcctga
      241 tagggtcagt agcccagtct cagaataccg cccaagaaca atttcaattt taatagcttt
      301 tactatgtat ttcataagca tgcccattga aattgagtca tcaaagcctc ccagttcctc
      361 caagacagat tttagcccga gagcttggag taattatccc actggatgtt agcctgtgta
      421 gctatttcaa cctcgttcat catttcaaac agctacatac tctgcctgct aatttcatca
      481 gatggattag cctctcttac ttgtctatct tttctggggg ctgaaatatt gccttcttct
      541 cctgttttaa taagctgagc aggcatgcac cactgcaccg cttctgcctc ctatttcttt
      601 cagctcagag aatgatcttc tgggggaaga gctgggacta aatgtgaagg tgaaaacttg
      661 ggcaacctgc aggctggaac cagcagcttt caacccaagt ctgaaaacac agtcttgagc
      721 ctatctg
//
LOCUS       KCLJ01002402             550 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 268219cal ultra-conserved element locus
            uce-2959, sequence.
ACCESSION   KCLJ01002402
VERSION     KCLJ01002402.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 550)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 550)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..550
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="268219cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>550
                     /note="ultra-conserved element locus uce-2959"
BASE COUNT          128 a          111 c          155 g          156 t
ORIGIN      
        1 agcaggggga caggtgggga ccaggctcac ccgctcgacc aaagcgcaca actttaagga
       61 agcaaagccc aaggtgggcc cggaaagagg cagagtgata gttttttaaa tggggaatca
      121 cactccggag tcctgattcc ctttctgtga ttgtttcaga cttgaagcaa caggccagcg
      181 tggctggtca agcgcccttt gatcgtgtaa atatcctgct atttcctatt ttaatgttct
      241 tcagatttag tacttgtaaa taaacacatg catcaaggag agattaaaca tttttgctaa
      301 agctggtgtt ttgcctgtgt ttttgggggt gatgtgggtg catggagcag gcagctttgg
      361 aaatctgtgg ctgtgctggg gggatatgat gtgccagcaa tgcgcaagtg tgggtgtggt
      421 cctgagatgt ggttgttaac acccacccag acactcacag gatttaggtg gctttcccat
      481 cagccccttt cctgggtggc tcatgtttgc tttaaacagt ttgattttac ttgctgatca
      541 gatgcagagg
//
LOCUS       KCLJ01002403             812 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 268323cal ultra-conserved element locus
            uce-6446, sequence.
ACCESSION   KCLJ01002403
VERSION     KCLJ01002403.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 812)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 812)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..812
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="268323cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>812
                     /note="ultra-conserved element locus uce-6446"
BASE COUNT          279 a          122 c          156 g          255 t
ORIGIN      
        1 agatacctcc cagcatcatt tttaatgtca ttacaatatg caggctctgc agtttggcga
       61 aaataccaga cagctcataa aaaactgtgg ctcttatggc actacagata gcagcttctg
      121 tattagattt gtactacttt aatgctgaat tttctatatc tcaaggctgt ttcatgcaaa
      181 tatttaagct taggtgtcct cacaaacaag cagccataac atttcagtaa ctttgtttta
      241 aaagaaagac ttttgaacat gcaggaaata ttagtacatc aaacaaagtg aaagacaagg
      301 tagtttaact tgttggtttg tttgctgaaa ctctaaagta aatatactgt agctaaaagt
      361 gttccatttt tatctgcctg ctgcagtaat ggctgtgtta cttcagggct tacacttcaa
      421 taattgatca gggtttgtat agcaccggct aagagcaaaa ataagagtgt tgctttgaac
      481 aaactgctgc aatgttatag cattaggcac agaaacaaga ttctggaaat atagatatat
      541 aaaaaacagg aaaaagatgg ataagttgga gtggtaaata ctgcttcagg ctagaaagta
      601 atgagaattt ttccatagag agttttgacc tgctattcaa aaattgtttc ttgtcttaat
      661 aaatcctaaa agtgtaattt acttgcaaaa gggaaagaac aaaggcacca aaattctttt
      721 gataacaaca cttgttaagg ttgataagtt gggtttcaaa tgtgtgaaga aaaatgtgtg
      781 acagtttgtt ttaaggtgac aacctaagtg tt
//
LOCUS       KCLJ01002404             607 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 268435cal ultra-conserved element locus
            uce-3481, sequence.
ACCESSION   KCLJ01002404
VERSION     KCLJ01002404.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 607)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 607)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..607
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="268435cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>607
                     /note="ultra-conserved element locus uce-3481"
BASE COUNT          194 a          113 c          126 g          174 t
ORIGIN      
        1 tattaacaat gaaattgaat gttgtgagcc tcaatctgtg catgtacaac aataatgcat
       61 gaaaggaatt ttattgaatg caagtacgtg cttgctaaat ggatgcttgt aataaagtac
      121 taaagcagct gtttagtact acttgtccta aaatttctac caattgtact ctgtgctgtt
      181 tgcaaaacca atctgatgaa ataagcagct aagcatcaca aaggcagttt tccttggatt
      241 tgtcatcaag tgcttaaaaa aataaattat gtcctaaggg acaagtgaca agggcccagg
      301 aggctgagga aaactacctc ataaaacggg agctggccac catcaaacag cagagtgatg
      361 aggccaatac taaactggag caagctgaga ataccatcag ggagctccag caacagcagc
      421 aatgggtaag gagcctggca gcacatcttt ttcccctcac atgtgttttc ctcatcatta
      481 tatgacatgg tctctgtgct gtctttgctg ttcactgtga tttgcattct taaaattacg
      541 caaattggat taaatgaaat tttgcttcta ctgatagatg agattcataa ccggtgtaag
      601 ttatgag
//
LOCUS       KCLJ01002405             760 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 268543cal ultra-conserved element locus
            uce-7138, sequence.
ACCESSION   KCLJ01002405
VERSION     KCLJ01002405.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 760)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 760)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..760
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="268543cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>760
                     /note="ultra-conserved element locus uce-7138"
BASE COUNT          221 a          182 c          148 g          209 t
ORIGIN      
        1 tttaaggggg ttagaatgaa gacacactgc tggtgtacag ggagcacaga aggggtaatt
       61 taaaacccat gtttttcctc cccctcgccg aaaacatgcc caacattgtg cagctgtgct
      121 gccagcttca tcactccctc catctccact cttgctaatt aaaaggttga tcacagaaca
      181 atgctcttct cattaatttc agctttctga ttgggcagga ttcccactcg ctccgcctga
      241 tcttttccac actgctgaag ttaatgtgac aggagcccga agatggatta cccgctgcca
      301 tattgcccat cacctccaat cagcagctat cggggtaaac tgattgttct aatttgctct
      361 cattattttt acaatatcag gagaaaataa cgcacacagc tcactgtcaa agccgtgaaa
      421 atcagccatt agttaaaccc agacactgag tggctttatt agaagcactg cagtttattg
      481 attcagcttc agtaaactaa gataatacct gtcctcttta aacacacttt ttaaggtgca
      541 cttatgtagc aagaaaagga tacttttgga aatgctcgct gtctcagcct gttatcttac
      601 gctggcagac aacaaagatt aagaacaatg gaagcttgac ttccacataa agaagggcaa
      661 aatatgcagc attatctgca cggcagcctg cgtgcacgtc tcagctactc ttctacagtt
      721 taaataaaaa tcatctcagg actagtatgg caggtgggta
//
LOCUS       KCLJ01002406             955 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 268652cal ultra-conserved element locus
            uce-2010, sequence.
ACCESSION   KCLJ01002406
VERSION     KCLJ01002406.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 955)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 955)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..955
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="268652cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>955
                     /note="ultra-conserved element locus uce-2010"
BASE COUNT          306 a          162 c          157 g          330 t
ORIGIN      
        1 tatatattga caaatatttc taaaaaatgg attggtattt ttgctgttaa ttgtttcatt
       61 actgaccttt acctctgtag acatatgcag ttttcgtttt tttgggagag actttcaaaa
      121 tatttttttt ttaagtgtcc aatgctcagt gctagcagtg acatttttac agtctattca
      181 gaagcatata tttcactctt ttgtatctca tttctttcta tttatttaaa acaacttagc
      241 atggaaaatc ttgcagattt aagtgacagt gatgatgtac aatatgcata aaatgagcct
      301 gtccctaccc gtggtgtgta ttgctaggga ctccattgca atatttacag ttaaactaaa
      361 ctttttcaaa tgaagcaaaa ttgcatttgt tttgcagatt tgctcatcat taaatgtgaa
      421 acatttcaca tttgtctttt tgagtaattg gctttttaaa atgataaggt gctctgaaca
      481 cttgttatgt ggataggtct gacgttgtat cccagaaatc catatgccat acagacagaa
      541 cagaagaaag atattcacaa gcatgtcaca gattggactg aagcaagcca aaaaccaaag
      601 tgccatggca ttaacaatag caccagattt actgtcacga ttgcaatctg tgctgtatca
      661 tagacagaag gagaactttt gataggtaac acctcagtgt tttttaaatc tttttggcaa
      721 attatcattt tcattatatt tttgcctgcc atataatatt attataatgg tattaagtca
      781 ctcagacacg cacacacatg cacacgcaca aagtttatta gccctcaaca aaagggctga
      841 tttacctcct ctgttcctca acaaaaggaa ggtattttat taaaaaataa ttttagggtg
      901 aatcatccgc aaaaatagca gggatttttc caataggcat taagttaata aaagc
//
LOCUS       KCLJ01002407             573 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 268765cal ultra-conserved element locus
            uce-5600, sequence.
ACCESSION   KCLJ01002407
VERSION     KCLJ01002407.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 573)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 573)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..573
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="268765cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>573
                     /note="ultra-conserved element locus uce-5600"
BASE COUNT          174 a          105 c           88 g          206 t
ORIGIN      
        1 gcctgatgca tctttgtcat gattcattat tcctaacagc tatatcaagt gctgcaatta
       61 ctgcacaata tagatttaac tctataatat ttctagattg gaaagagaaa aataatatat
      121 taagtgcttg tgatatcttt atgtataagt ttgagaatca ttaaatatct gtcactcttc
      181 cttcctcctc agcatcaatt actccactct ggttttactt actccactct gtataatgag
      241 tccctagagc atgtttcatt gcgggagaat gaacacattt ttcacttgcg gtcagtggga
      301 tgtggttaat ttgaaatcac ttaaactatt atatctgtca agcgtggtta ttttattttc
      361 aattcacatc agtgttttag tatgcatgtc ggttactggg ttaaactggc agattaattt
      421 ccaagcagtc tgttgtaatg ctcttcttca ctatctttac atgtaggctc ttgttgaaac
      481 ttaatacatt cctattaaaa tttacttcag agaaacctac attcaatata aacactcata
      541 tgataaacaa cactcaaaaa gggggcaaga tca
//
LOCUS       KCLJ01002408             663 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 268875cal ultra-conserved element locus
            uce-5218, sequence.
ACCESSION   KCLJ01002408
VERSION     KCLJ01002408.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 663)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 663)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..663
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="268875cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>663
                     /note="ultra-conserved element locus uce-5218"
BASE COUNT          214 a          137 c          126 g          186 t
ORIGIN      
        1 tgtggtttac agaagaaagt attttgttta ttcaaattaa cctataagta cacaattttc
       61 caaaataaaa gccagcagct ttggtaggat cagaaggaga gaaggggact tttatgcact
      121 aagaaaccag ccctatttct tattctgagg cttgataatt taaaaaatgt gacagctaaa
      181 acccactggc acatgctgca aagaaggatg tgataaaata atgctactca tcttcaaggc
      241 tgtcagttca gcaatcagta cttctattca tctccgcggc ctgctaactc agtgctacca
      301 tgcgatagat aaaccctaat ccaagtgaca gcgttcaaat cagaactgat ttgattgttc
      361 acatatgata ccacaagaca ccagaagcct aaagagttta taaaaatgcc tggatgtctc
      421 ttgtaggcac atttcccttc agaatatctt gcagtgtagg atacaccagc tcttaaacca
      481 ggggtaattt gtaggtcatg aaaatgcttt ggtggcacag tcagttctta tcacagtcta
      541 actctagcaa gagaaaggaa agctcaaaaa taaaatgtgg ttcagacctt gtgaaaccca
      601 cctattctgc tttcaagtct cccttgcagg aagtgacttt tctttctctg cagagaccag
      661 act
//
LOCUS       KCLJ01002409             721 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 268986cal ultra-conserved element locus
            uce-5690, sequence.
ACCESSION   KCLJ01002409
VERSION     KCLJ01002409.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 721)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 721)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..721
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="268986cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>721
                     /note="ultra-conserved element locus uce-5690"
BASE COUNT          200 a          146 c          155 g          220 t
ORIGIN      
        1 gcagtgtata ccccactgtt caaatctgtg gcaaaatatt ctacagagag ctacttaata
       61 aatatcaact tgctccaata gtctttgaga aatacctcaa cagatagcaa tcaatcgagg
      121 gctgagttgg aaaaaataca aaaggacatc aaagaggttc tcattcccag tctattgctc
      181 tatttaaggg tcctataatt cggtgaggtt gtgtgctaaa taatttgtaa gccttcagaa
      241 catccaggtt attgtttgtg gacagatggt gcatcacatt ttattgctta ttccttctgt
      301 ggtttctcat atgcaggact gatgtgcact ctgaagtctt tgtttccttg ctaaaatctc
      361 taatctaaaa caggcaatca agcacacaga cagtgcttca gaaagcataa tcatactttt
      421 aaaaaaaaaa catttcagct gcagttagga agcagatgtg ttccctgaaa atgtaaaagg
      481 ttatcagaag tattaaaata gggaaactga atttgggagt gctggggaga gcatgtattt
      541 tctcccagta ctgcacggta ggtgtgcctt ttcctaggct acctgctttg tatctgcctc
      601 tctgtggagc tggtgtagcg aaagccttcg gagaccggct tttgcttcca cctttcccct
      661 ttggcagtct ttgtctttta caggcaagga gcagccgtgc tgtgatcctg gaaccgctgc
      721 t
//
LOCUS       KCLJ01002410             474 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 269096cal ultra-conserved element locus
            uce-6843, sequence.
ACCESSION   KCLJ01002410
VERSION     KCLJ01002410.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 474)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 474)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..474
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="269096cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>474
                     /note="ultra-conserved element locus uce-6843"
BASE COUNT          157 a           69 c           86 g          162 t
ORIGIN      
        1 ttttgccaac cagaaaaata agaagagact ttatctgaat tctgttcgta taaaataact
       61 ttgactgtta ctagaaggca cataatcatt aatttccaga gaaatatgaa tattttctaa
      121 aaataggctg agatctgctc ttagtagcat tgtatcctag aagcaggaaa ggctctagag
      181 agattacttt cacttttccc tagatatatt tagtgtacta actagcatag ttaggatatt
      241 atttttcttt ggttttgtca gtagcatgtt tgaaataaat tttattaagt ggtagtgtat
      301 gtaacattgc attgtgggta gcagtttcct gccttaacct agccacatcc tcagctgtta
      361 tatgagacaa gtttcccata ttttctgcaa gttgacgaaa aaaatacaga caggagaaaa
      421 taactaggaa gttaggatga tcttattgac tgtttagaat atctaatcaa atgg
//
LOCUS       KCLJ01002411             595 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 269204cal ultra-conserved element locus
            uce-587, sequence.
ACCESSION   KCLJ01002411
VERSION     KCLJ01002411.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 595)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 595)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..595
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="269204cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>595
                     /note="ultra-conserved element locus uce-587"
BASE COUNT          185 a          114 c          110 g          186 t
ORIGIN      
        1 ttacgattat tttttattta catacacggc agcctgacaa aatgaggttg atgctttctc
       61 cactttttag tttccagctg actatcattt tcttttaaga ttaagtaagt aatttattga
      121 actgtagcat caagtattta ttaggaaatt gctgggtaat tttaaccgta aaaacataaa
      181 tctgcatcca aggcctccag taactttgtg cgactctgca ccattaattt cttccagagt
      241 gacattctga tatgagctga acagatggaa ttgcaggatt gttctagcaa atttatcata
      301 aaaaatgcat ccgacacctg tgtaatttgc ctaatcattt tcctaataag ctcccaccat
      361 taattatgca cgatttccac aatgcaatca agataaaagt aaatctgatg acttaatacc
      421 cttcaaaata attggttcac ccaacacaag gcctcctttg ctttccatag ccattccagt
      481 taattagaaa aagggtgcac cctgtaggag tcagcagaat ggatcatggt gggaggcagg
      541 cctgctggtt ttttgggcag gagtcaagga tattaactca tgaaagagag gaagg
//
LOCUS       KCLJ01002412             611 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 269315cal ultra-conserved element locus
            uce-6344, sequence.
ACCESSION   KCLJ01002412
VERSION     KCLJ01002412.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 611)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 611)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..611
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="269315cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>611
                     /note="ultra-conserved element locus uce-6344"
BASE COUNT          225 a          105 c          102 g          179 t
ORIGIN      
        1 gtatagccag ccacttacta cccagtgctt tattttctcc ttaaagagca ttttggggag
       61 taatttcagc agtcaagtca gagtccaccg agaattgatt tttgtgacct cacatattgt
      121 agcagaaaat tataacagga aatacaccat taagtgataa acaaggaaac atggttacaa
      181 ttactttcag aacataattt tatccactct agttttgaaa atgaagagat agtactgact
      241 ggaacacctc aattctgaat gcaaactgta caatctatta tattaaacaa agtcaaaagc
      301 aatgttgaag atcttgaatc tattcaaggc atgcacctca ttacagactt agcaaattaa
      361 aacacaaata ggattagaaa agaataatgt aacaatctcc cactatggtc cctggagcat
      421 taagtcataa attgggtttg cattaaattg tgcctgcagt attgaattca gggaaagagc
      481 tataggctga agataaagct tactaggcta gccaactttg ttgttttaca caataaatac
      541 acaatgcatt cattggaatc taaaaaggca tattcaaaca tgtatttata tctcaattag
      601 aaaatgcagg t
//
LOCUS       KCLJ01002413             564 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 269427cal ultra-conserved element locus
            uce-724, sequence.
ACCESSION   KCLJ01002413
VERSION     KCLJ01002413.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 564)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 564)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..564
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="269427cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>564
                     /note="ultra-conserved element locus uce-724"
BASE COUNT          152 a          113 c          108 g          191 t
ORIGIN      
        1 ctccacactt gttttattct gctaaatagc ctatgcagaa aacaatttac ttatccatta
       61 acccaaccct gttctattct gttttggttt ctggggttct gttgtcattt tatcctaaag
      121 tgctgtttcc tcacatttgc atctaccagc ctttttaatg tgatattcca tttaaactgc
      181 cttttaattg tatgtgctgc cttggcagaa catgactgat gtactagcgt taattagggc
      241 tccagtcagc agcctatgcc agctggaaac tgagaaacaa gcgtaaatta ttctgtcatc
      301 aatcagctca aaaatgtttg aatcactaat tagtttgcaa tttgggtgac agtttatctg
      361 acgcaggcgg tgtcagaaac ttcagatctt agatgaataa tttgccagca acaagcacat
      421 attccctgct tttaaataca tgaaggttta tctgcatgtt gaaaggtggc tcagcagtct
      481 tcattaactt ccaactggga ctatgtaaat caggaatcag tgtgaggcac ttcagtctgt
      541 ggtggcttag cagatgatat ttag
//
LOCUS       KCLJ01002414             665 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 269534cal ultra-conserved element locus
            uce-7053, sequence.
ACCESSION   KCLJ01002414
VERSION     KCLJ01002414.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 665)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 665)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..665
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="269534cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>665
                     /note="ultra-conserved element locus uce-7053"
BASE COUNT          214 a          112 c           99 g          240 t
ORIGIN      
        1 tattagaatt cttaaacttg ttgaggcttt ccacaacacc tttcccagat tttaattggt
       61 tttatctagt tccataagag agctctttaa aacaaatcaa agtgtcttaa atcacatgta
      121 tcacccatcc agagatattc cttctgtaat ctggcaagtt ttcctaggaa cagaaatctg
      181 aaggttctca acgatgaatt aaaagacttg gcagaagata atttatgtgc tttttgatgg
      241 gctcagtttc aaaatgacaa aataacaatg ttttgtaaca gaagggttaa atcttaatct
      301 cagaggttta caaagctgct agtcgcagtc tccttaaaat ttaatatacc tcgttaatgc
      361 ttacttgcaa acactgaagg atttttatga ttataatcat gtgttacagc acctagtact
      421 gtttctaagc agcatactaa tcagcttaat gagatattac tgcacttttt gttgactaaa
      481 gcaaaatccc ttttattgtt ctaaagcttg tcctttattt tttcccaaaa cattatcttg
      541 ttttattgta caccagtaaa tatcatacca tcggtttttt gtcaaatcat aaaactatct
      601 ttctcattgt agaatgtgta atatattgaa tatggttaat ggaactgaaa gttacaaatg
      661 gattt
//
LOCUS       KCLJ01002415             605 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 269641cal ultra-conserved element locus
            uce-6068, sequence.
ACCESSION   KCLJ01002415
VERSION     KCLJ01002415.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 605)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 605)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..605
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="269641cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>605
                     /note="ultra-conserved element locus uce-6068"
BASE COUNT          182 a          133 c          121 g          169 t
ORIGIN      
        1 aagactgggc agtcatttga atcagtgagt gacaggctgg gccagctctc tgtatacatt
       61 aataaattag aattttaatt gtgtctctga ctgcaggagc tgctccagta ctttaatacg
      121 taccaacaat tggctatgtt atggaatcca cgatgtggcc ttcactgttg acctctgcaa
      181 cacaattccc agtctgacta cggaaactgt ttggtttgat cctttcaact tatttgaatc
      241 ctgacaaata agctcacagc tgaaaggtca acacagtcat atttcatcct ctggagctat
      301 tcttaagaca tctgcacaac aaagcacttc ttttagtacc tgacactgga cctagccagc
      361 acaatctctc attaaaaatg tccccagtgg aagagtctat taaaaggcat atggatcagc
      421 tatggattta ccaaataaaa tatttttgaa agcattaatg taacgctttg gattatggct
      481 cttgacgctg ccaataaaac gtatatttgc ccaatgacaa aacgcttcat actttccaaa
      541 agaataatag cccggctgta aagcacgagg ggttgtccag cagccggagc acaggggtgg
      601 gagcc
//
LOCUS       KCLJ01002416             434 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 269749cal ultra-conserved element locus
            uce-1889, sequence.
ACCESSION   KCLJ01002416
VERSION     KCLJ01002416.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 434)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 434)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..434
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="269749cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>434
                     /note="ultra-conserved element locus uce-1889"
BASE COUNT          145 a           84 c           93 g          112 t
ORIGIN      
        1 ttgtaaatca acaaaacgca gcaccaggca gcatgtgcct cattttatca aatggtacac
       61 agcttggtaa tggcctcccc agataatttg aactgatcta tggtgatgac cagggggacg
      121 gcaatgattg tcatgttagt aaaaaaaatc aaaacaatca tgttacgtca gttctaccat
      181 taaaagactt gcttctctgc aaatttttgc gctcagtaat taatactcta gggcttgcag
      241 tttccaagct ggtactccag gcacagagat gccactcacc tgataattat ttcaggaaac
      301 catgcacgaa tgaatgtgat tgacaaatgc agcattgctg taattgcctc aagcagagtc
      361 agtgagaaaa ggagaaagaa agaggaaagt taactagtta tgtgcttacc tatgagactg
      421 gaagcacaaa ggta
//
LOCUS       KCLJ01002417             476 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 269854cal ultra-conserved element locus
            uce-4095, sequence.
ACCESSION   KCLJ01002417
VERSION     KCLJ01002417.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 476)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 476)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..476
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="269854cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>476
                     /note="ultra-conserved element locus uce-4095"
BASE COUNT          150 a           81 c           98 g          147 t
ORIGIN      
        1 acacagagcc cttagtgacc ttgctagtcc tctgctgatc acttgtgttt gttgttgtag
       61 gaaggcaaac ataagtatag aagtgttatt gaacagaaaa cccttcaaaa atttcaccag
      121 tcttttgtat tcaagtcgca gagcaatagg gggccgccct gctcagaaag catacttatg
      181 tgagtattaa gaactggctg agataagaag taaagcttaa gagaccttca tcattagctg
      241 ctagtggtgg agattagtga tcctactaca ggattacaga tggaaagagt gctagtgttg
      301 gttaattgtt cattaatgct tgtaaaataa gatagcacgt aaaacttgct attgtctgct
      361 ctctcaaagt aaagcaaaat tggatctgct tgtcaatagc tgtattgatg ttaacaagaa
      421 catatttaac agatcatttt acagtgtaaa ctactatccg gctttttcaa cattta
//
LOCUS       KCLJ01002418             790 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 269961cal ultra-conserved element locus
            uce-7574, sequence.
ACCESSION   KCLJ01002418
VERSION     KCLJ01002418.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 790)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 790)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..790
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="269961cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>790
                     /note="ultra-conserved element locus uce-7574"
BASE COUNT          229 a          170 c          153 g          238 t
ORIGIN      
        1 atcttcctgt gttttaataa aattttttta ctcactcaat tacaatatca ctatcagttc
       61 aaattacagg tcaaagatat ggggcttaat gtatgtacag ccagttctct tctcctaata
      121 acctgtcatt cccaggattt gaatgtcaga acagagcctg ctgtggtaat gctacccggc
      181 agcacagtga tgaaaacttt ggacaaatca tgaagaacat tccagatcca aatcatcaga
      241 aggttactgg ggagagcctt tcatcccgct ctgacccctt gatctgacaa gtgacaccta
      301 caaaatgaac agctctccag cttaaattgt ttaactgtag cctgatcagt tttattatct
      361 tgctaatccg gatatcagcc atttcatcag aatggaagat atgcatatca tgaattattt
      421 tgacaccaag accttttaat ttttgccagc aatatttcac tacaccaatc agggcctgca
      481 gtcagtgatg ctgttcgcct cctgggatgt cagaggacag tgcactcctg acagcaccaa
      541 atcatctggg agctgtaacg agctattgct gcaattatta ttatctcttg tagtcatgca
      601 tttcattaca gtgcaggcag acagaggttt cagtttcagg ccgctcttat ttaggaatct
      661 ctgccatttt atgggctgta gggctctgta gtgtaatttc ttttctcctc ggtagacaag
      721 gataggtgaa tttctaataa aaacaaaaca ctagcgaggt actgtagaaa gagggagcac
      781 aatacagtac
//
LOCUS       KCLJ01002419             400 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 270072cal ultra-conserved element locus
            uce-5469, sequence.
ACCESSION   KCLJ01002419
VERSION     KCLJ01002419.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 400)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 400)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..400
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="270072cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>400
                     /note="ultra-conserved element locus uce-5469"
BASE COUNT          120 a           78 c           87 g          115 t
ORIGIN      
        1 ttcccacctt ccagctttct gcctgtggga gcatctgtca aggctgaatc agcaccttcc
       61 caggaaaacc tcataaacat gttggaagac atttcatttt gtcatctacc taggcacttt
      121 ggactggtat gcaaataaga cagcacaaga acaggaccac agcagcagtg ctaatgctct
      181 aagtgatctt tcagtgtaat tagaatttgt ttcatcacac taatttgaca tggcaaatta
      241 gtgaagctaa gataaggggg tttagtagag ccagggcgct ggtatgtaca cagaaacttg
      301 tcactaagtc catttgcaca tgggagttgt gtaacattgc agagaagtga caattagcaa
      361 aagctctgga aaatatcagt ttgttttatt tttaatctgg
//
LOCUS       KCLJ01002420             583 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 270257cal ultra-conserved element locus
            uce-1375, sequence.
ACCESSION   KCLJ01002420
VERSION     KCLJ01002420.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 583)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 583)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..583
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="270257cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>583
                     /note="ultra-conserved element locus uce-1375"
BASE COUNT          174 a          121 c          107 g          181 t
ORIGIN      
        1 ttattttgca aaatttaaat catggagcaa agaaccttaa atgttttcca cctgtaacag
       61 tttttccctc tgcatgtgtc tgcacgcagt cagtctgtac actgaacacc ttgttttctt
      121 gtattgcagg cgtattgagg ggcttgcatc ccttcacaaa ctatgctgta accctaactg
      181 cttgcacttt ggctggctgt actgagagct tgcatgcatt gaacatctcc actccacaag
      241 aaggtaaagt aatttcaaag gtcttgactt ccacatttca gtcatgaata ataaaacagg
      301 agaagagcta aacgctgcaa agccatttgc tggaaaaccc caacctaatt tgatgacaaa
      361 gtgcattgcc agaccataat tgctccattt tttggggggt gcgaaaatga atcaaactcc
      421 atacccttta atgacatgca tctttaatag ctgtaatgca gattaatggg ctttttaatt
      481 gctgttacat tgttcatgca atagccttgt cattaatatg aagcatctga aagattaatg
      541 aaagcttcct cattttacta tggctcagaa gtaaatctag aga
//
LOCUS       KCLJ01002421             620 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 270367cal ultra-conserved element locus
            uce-7173, sequence.
ACCESSION   KCLJ01002421
VERSION     KCLJ01002421.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 620)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 620)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..620
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="270367cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>620
                     /note="ultra-conserved element locus uce-7173"
BASE COUNT          129 a          151 c          142 g          198 t
ORIGIN      
        1 cccgtttcac attacagggt gcccgtcgct tttagcggct gagatggttt aaaggccacc
       61 tcaggttttc agtgcctttt gtgtgagact gtcagcgccc gagccccggc catgacatgc
      121 acagaccggc tggtttttct ccttcagctc agcgcctctg gacagcttct ctttctctgg
      181 cagccgcttc aacctgctct gtcatcttcg agttcaatat ctgctgctct gaagtgggat
      241 gggttggacc attgtatttg gtcttttgac cctccatgtt gcccatgagc agtgaaggat
      301 aacttttgac aagccatgtc agatgtgaca ggcaatctag ttgggttgag tggaaatgtg
      361 ctgtacaagt ttgaagcctt agttgggggc attttcctgg tgttcagtgc atttaaattg
      421 acaccagacc tcagtgttgt tccttgcaga gccgcgtttc caattttatc agctcaaatg
      481 aaaacctttc atatgcattt tgcatctcat tccaccaatc caaggcaata gcccttccca
      541 gagcatccct caggaaccac attaaattta ggatttttat tttcgtgtag gaggttatgt
      601 tttactgttc catggatttc
//
LOCUS       KCLJ01002422             807 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 270479cal ultra-conserved element locus
            uce-871, sequence.
ACCESSION   KCLJ01002422
VERSION     KCLJ01002422.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 807)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 807)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..807
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="270479cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>807
                     /note="ultra-conserved element locus uce-871"
BASE COUNT          252 a          133 c          163 g          259 t
ORIGIN      
        1 ccaaggaaca aagaaaggtc aggtaaacca tctgtgtaag tcacagtaat agtacctgct
       61 gtttggttta tgcagtggta ctgctttatt attctctaaa atggaactta tccgctagat
      121 caagttaaaa ctaaaggaag gctgtggaga tggcaagcga cattgtgtgc atctttcaga
      181 acagggcgac agatgtgtac cttgattttt gaatagttta ggtttatttg tgaagatagt
      241 gcaccatcaa agaacatata aaggaggctg agaaaaatca ctgtttaata ttgcagaatt
      301 tactgcttcc attctgacca tgagcctaaa tttacacaat gaaatttgat tatctctaat
      361 aacaatatta gatcctgcac tggatggatg agaattgagg tggttttgtt gattgcaagg
      421 gtttaatgtt gcatttcaga atctgatgtg gtttagcctc ccttccatta actggaaaac
      481 ccctgaggtt ttacaattat ttcttaaaga taatacattt aagattgcat tggtaggctg
      541 aagaaaagtc ataaaggcaa gaagggaagc ccttaataac tcttgagatt cagacatgtt
      601 cagcagttag attggctctg acttcaccaa gggtcgacaa tgtgtcattt ccatgaagcc
      661 aaattgccct ctgcctatat gatattaatg tgcaaatcaa tatttcaggg attaaatttc
      721 ccttcttcat tttttatggt ttctacctca ataagtctca agtctattag aagaggctgg
      781 atgatttaaa atctttcact gcagaat
//
LOCUS       KCLJ01002423             622 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 270589cal ultra-conserved element locus
            uce-3879, sequence.
ACCESSION   KCLJ01002423
VERSION     KCLJ01002423.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 622)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 622)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..622
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="270589cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>622
                     /note="ultra-conserved element locus uce-3879"
BASE COUNT          184 a          122 c          109 g          207 t
ORIGIN      
        1 ataacatggt attttaaaag tagctttaat ctataaatta aatataataa tatttaaaat
       61 attttaccct catggaaaat aactgtttat cactttgcct ccttatagta tctggggaga
      121 atctattgat ggaaaacctg atgacaaaaa attctatcgg tctgaagcaa cttttggaga
      181 atctgattag gtctcatgct gcaatactag gtattccatt tttgccaaag ggccagctat
      241 tattattaac atcatttgtc tgaatcatta ctctgcacct tggttcagca aacactatga
      301 agatggcatg gtaataaatg accgcaggat tctttcctgc ttcagcctgt ttttatctgc
      361 cacctctcta ccgtcagctc catctttctg aacctctctg aatccccaaa agggacgggg
      421 catctatttg ttttccacta ggttaccact ctgtctattg ttgtttgcac taaagggtac
      481 gaattcaatt cattcttgtg acataaaagc actgatacag taaatttttt gcccaagaga
      541 aaacacaaag ttgctgaata tgggctaaga tgtgaagctc ttgtatgtac gtgaaggagc
      601 tttctgagac agtcttgctc ac
//
LOCUS       KCLJ01002424             650 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 270701cal ultra-conserved element locus
            uce-2068, sequence.
ACCESSION   KCLJ01002424
VERSION     KCLJ01002424.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 650)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 650)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..650
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="270701cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>650
                     /note="ultra-conserved element locus uce-2068"
BASE COUNT          228 a          119 c           94 g          209 t
ORIGIN      
        1 aaatccatgt cagaaagggg cattttaagt ttaaactaat taggaaataa cttccttaca
       61 attatcttaa tttgttatta aaaccaagat ttcttagtat gattcacaac agcctgtgct
      121 gaagagaaac tattaattac tcgatagaca gttagctttc aagtgagctg cattttaaaa
      181 acctccttta aaatacaatt gctaaatgcc ttacagtgct gtaatgtgag acaggttcaa
      241 atcttattac ttcactgaaa ttaaaaccta agttttaata ctgttcaagt cgaacaatga
      301 ttccacactt tattgctttt gaaatccctt gatgatcata ggaaaaaatg ccctcgagaa
      361 aaagagactc tgttttcgat aaacagaaaa tacagtttgc actcttagcc tctttgtcat
      421 cacaagaaag gatttaatgc caattcttta aaaaaagact tttttcacaa aatgtgcacc
      481 ttgtgtgcca tttgtaaaat cagctcactt tcttttattt attactgcag cgcggcaagg
      541 caataaagca gctactgata gctaataaat tacatgcctt ttaaaacaat tctccagcta
      601 caaaaacttg taactacaaa ggcttacatt tacatggtac atcgtgtgaa
//
LOCUS       KCLJ01002425             823 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 270811cal ultra-conserved element locus
            uce-2539, sequence.
ACCESSION   KCLJ01002425
VERSION     KCLJ01002425.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 823)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 823)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..823
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="270811cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>823
                     /note="ultra-conserved element locus uce-2539"
BASE COUNT          189 a          180 c          166 g          288 t
ORIGIN      
        1 ctttaaactg ctggctgcaa tactgcaaac acattcagac cctggcttgg ccagcagttc
       61 ccccagctct ctgcatgttt gctctccagg ctttattttc cctacactat tggagactct
      121 ggagtcacag cctatgtctc attgttatgc atggatggga aatattcctg tacttatttg
      181 cattcattag ctgttgggag ctcctctgtt gaggtctcta gccttgtttt tacagtgctt
      241 ttggcagtgt ttctgcactt ggtgtgcgaa tttttatgat ctgttgcatg ttattcatgc
      301 aatttcctgc cctgtaatgg tatcagtttt ccagacacag aggaatacaa acgaaaaccc
      361 aggagcctgc attagcataa aatgtcccag ttctgtcagt ttgattaatt tgtctctttg
      421 tctccactct atatgataag tgctattaat ggttgcaaca cttcatatgt caaagtcttt
      481 cttcctaatg acttgaaaat gtggtttatt tccccctttt ttgtattatt tttctcattt
      541 agcattccac tcaagtatag atttatgcca tgctctttca ttatcttact ggttgcagca
      601 ctggagtgat tacatatggt gtagggtatg agcaaagatg cgatcccagg ggcagcagct
      661 gctgatgcaa gctgaaaata gatccagcgt atgctcagca cttttcccag aggtctttta
      721 tttattagga acagtcttgg tacaggacag ctcggaccct catttagcaa gatgactttt
      781 tgcctttcaa gagcagcgcg gtgactttgc tctatttact gac
//
LOCUS       KCLJ01002426             735 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 270923cal ultra-conserved element locus
            uce-3217, sequence.
ACCESSION   KCLJ01002426
VERSION     KCLJ01002426.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 735)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 735)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..735
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="270923cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>735
                     /note="ultra-conserved element locus uce-3217"
BASE COUNT          242 a          116 c          150 g          227 t
ORIGIN      
        1 acaagtaagt gtataaagga aagaataatg aacaagggga tgctttcagg aaaagacgtg
       61 catgaaacaa agtccaacta actttttgga gttgtagtgt atcactggta aatgaacaac
      121 cttgacatag ctaaactatg acagtgtaca gttccctcct tgttagcagt tccacttgct
      181 ttaaagtgct tgtgcttgat gctaaattgt cagataaaga aaaaagataa ttatcctgga
      241 agggtagtat atggcttcta gacaagatgt attcagaata agaactggat gcttagaaaa
      301 tgtaaatcag atactgaatg taaggatatc aagttgagga gacatgatga aggagtcagt
      361 tgcattgaaa attcagctat atcctcatca cagcgggaag gtgacttgcc ttgctgagca
      421 atttgtctta caggcttgaa tcaaactctt actgataagg ttctagtttc tgagcactca
      481 tttcatacct tatcattttt ctttctgcag aactgttaat gcaatgcttc atggcccaga
      541 ggtcagaatt gacctccttt taatatgctt ttaaatatgc tgttcataaa taagttacat
      601 tgtagctctg taaattgttc tgaagttgca tggcacaaat tgcaaatgtt gtatcagcaa
      661 tgcctgaaga caagaataaa cttttttcat ttggtatatg aaatcctgca aagtttttga
      721 aagcaaaggg gaatc
//
LOCUS       KCLJ01002427             597 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 271035cal ultra-conserved element locus
            uce-2062, sequence.
ACCESSION   KCLJ01002427
VERSION     KCLJ01002427.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 597)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 597)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..597
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="271035cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>597
                     /note="ultra-conserved element locus uce-2062"
BASE COUNT          163 a          112 c          105 g          217 t
ORIGIN      
        1 attacaagca cctctaaaat gcagtagtat ttttagtgct ttatttagat ggtgtggaaa
       61 gcctcaatct agggtttgac ctctttgtca tcagccttaa aagaagttgg ttcataagtg
      121 tgctttattt tgtttttaat tctttttaaa gaattgcaga agaaaaggtg tttgtaagca
      181 acttcccaaa ttattttttg ccatccacaa gtttagagct gcctgtttga atatttccca
      241 gaaagtattg ttcttatgtg acaacaggtc agaaagactc tgcattaatt acactaacat
      301 atggttatta acagattcta gctcagggag caatacttta caatgttatc ttccacatag
      361 tcagatgtta gccatattgt cagtgctggc agctattgtt tcactcattt acttcacaga
      421 gctaattact ccctaataat aactttacct tggagttttt cacttgcttg tgccagcaaa
      481 cctgttcaca ctacatatgc taattattgg cacttattca ttatgttaag atagctttag
      541 ctgtgcagcc tggctttcgg tatggagcca gctggctgca aagttccacc ttttttt
//
LOCUS       KCLJ01002428             781 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 271145cal ultra-conserved element locus
            uce-1997, sequence.
ACCESSION   KCLJ01002428
VERSION     KCLJ01002428.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 781)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 781)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..781
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="271145cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>781
                     /note="ultra-conserved element locus uce-1997"
BASE COUNT          222 a          169 c          148 g          242 t
ORIGIN      
        1 ttttctctca ggagaggttg tccagagttt gaagcataca aggtctcatc ttaatgctta
       61 tatgagtact tctgcccttg gatattgttc tcatcttcac aatactatgc aaatcgacag
      121 ctacttctct gtgcttccag ctaggacttc tgaatatagt gtgagtatct aaaaacagct
      181 aaaaaaagct taaagttcag ccctgagaat gtctatatgt gtatgatatg gatgtgtttg
      241 tagatgtgtg tactagtcat atactgtagt ttgaaaagtg gatctgtgta aatcagtgca
      301 tttatttagc tctctcacca actctctccc tgagttaaca ccccagcaca cacaatgcta
      361 gcgaaggtga ttatctctgc tagcataatt cctccgtaac atctgctttc gcccataaca
      421 ctccactaat ttttccctca tttcattaca cataattttc tttcaacaca atctacatgt
      481 attaagtggt aatgactttc cagttaagag caaatcgacg ccaagggacc cccccctcga
      541 ttgcctgccg tgcctgactc cggctattaa agataaattt ggtgcctcag aaagctgcag
      601 taagctaatc aatcaattaa gcggttagga catacattat caaaattcca cagtgcgggg
      661 gtgcatgaga gcatgctgac atatttggta tgagaggttg aaagtcagtg ttcgtcttgt
      721 gaaatgaaaa ctcaactatt gcacactacc aatagcaact ttggtgtctg tgctggtaca
      781 a
//
LOCUS       KCLJ01002429             498 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 271257cal ultra-conserved element locus
            uce-4730, sequence.
ACCESSION   KCLJ01002429
VERSION     KCLJ01002429.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 498)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 498)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..498
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="271257cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>498
                     /note="ultra-conserved element locus uce-4730"
BASE COUNT          157 a           98 c          114 g          129 t
ORIGIN      
        1 gtggtggatt cagccttatt ccgagggatt cccgctgccc aggggctgaa ccccggggct
       61 ccgagccgca gggaggcaaa gggttaacag cttctgaatg cacaccaagc ccaaagctac
      121 tgggaaagaa tatccaaaaa aataaccagt ttttttttcc agccgctgga ccttattgaa
      181 tgtcattgaa gaaagttttg aatgccagat aaagagaggc gaattaaagt gtgtgacagc
      241 agaggataag caaacacaaa gagaactctg tcacactttg ggcaaaatcc gtgggctttt
      301 taccaagcct cttcgctatg attgaattaa gtaataggaa aacattttct ttcagtttag
      361 agccattaga caaaaacttc aaagcgaata acacttttta atgtgcagct caacaatgga
      421 atctgttttg tgctgaaatg tttaaatggt ttgttgtgca actgtgggct gaaataacct
      481 agactgcaaa atagcatc
//
LOCUS       KCLJ01002430             520 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 271362cal ultra-conserved element locus
            uce-554, sequence.
ACCESSION   KCLJ01002430
VERSION     KCLJ01002430.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 520)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 520)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..520
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="271362cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>520
                     /note="ultra-conserved element locus uce-554"
BASE COUNT          162 a          101 c          108 g          149 t
ORIGIN      
        1 agaaagaaag aaagaaagac cgaacaccgc agtgctgggg tggtgagtgt tcgggtgggg
       61 gcggggaaaa tgctgcagtt ttcgtgaaat aataaggtgg aaaaaaaggc atacaaagag
      121 taggtttttc attgtctgta aaatataaac acagatgaat tctgtctttg gtttgttcat
      181 gcttttcact ctgcacagca gggatgttct taagaagttg ccctctgcga aatttcacta
      241 aatggaaacc gtggaccctg catgatgcga ttataatcac accagccatt ctttttacat
      301 aattttttgt ttaaaatcca gtaatgcttc ttgtttttaa aacatatatc tatatctata
      361 cacgcatcta aaacagtgct ggtttacgtc cccccagcaa agtgcaagct gaagctataa
      421 ctggctgtat cccatccgca aatctccatg gactcaaaaa caatatgaaa atttttagct
      481 gacaagaaca tgtctgctgc ctgcagtcac tgcaatagct
//
LOCUS       KCLJ01002431             599 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 271468cal ultra-conserved element locus
            uce-6401, sequence.
ACCESSION   KCLJ01002431
VERSION     KCLJ01002431.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 599)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 599)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..599
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="271468cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>599
                     /note="ultra-conserved element locus uce-6401"
BASE COUNT          169 a          107 c          118 g          205 t
ORIGIN      
        1 tcaattatgg cacctgaaac tgctttgctt tgcaaccctt tgagtgtaca tgttccttac
       61 ttatgaaagg atgttaacag gctgcactct tcaaatactt ttcttgaatt tagctttctg
      121 aacaggtttt tgaaatcaat acagagagag ctgctaacag gaggtaaact acaaaccaca
      181 aacactttca ataggatagc tctttttata taacatttga tatcattttc acagcatgat
      241 ctctactttc atactgtgat agcttttacc tggagtttag atgattcatt tttgtagtgg
      301 atacttaact tttatatgag gaaaatgcaa gagaagccag cacagcatta aatgaactat
      361 agttgcagca ttaaatgaac tacagtacag taataatgtt gaaggctcag atccttgcca
      421 tctcacaggg ctggattcgt ctattgattc ataagtgagg agatatggag gcctagaatt
      481 ctctctcagt tttggcatat ctaattcaag taggttggca ttcagtgatt gtttagtaat
      541 ggtgtgggtc tccatgtgtc tgtgttgctg gcttgtcctc aagttctctt tccctgaag
//
LOCUS       KCLJ01002432             585 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 271579cal ultra-conserved element locus
            uce-5782, sequence.
ACCESSION   KCLJ01002432
VERSION     KCLJ01002432.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 585)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 585)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..585
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="271579cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>585
                     /note="ultra-conserved element locus uce-5782"
BASE COUNT          167 a          115 c          118 g          185 t
ORIGIN      
        1 gtgtaatgca agctgatgtc gagataaatg cgctataaat gtctgagctg tctttggtgt
       61 gaaaggtggg gagagattca atccgtgtac caattttaat ttgtactcac acattagcta
      121 ttgctaattt gagaacaatt aaaaggcagg aatgagaaaa gcagatgtgg agcagtggaa
      181 tatattgcag agaagcttca ctatgtgtta ttttctaaca cgcagtttta tttttactgg
      241 agtctgtcac aaatcctaaa ataccattac agagttagca gatggttccc aagtattcat
      301 acctgataaa gcctcctggg tgatcaagca ctgaaaaatc aatatatttt tcaactttca
      361 atggctagct attcagtttc attacatctt gctattcctc catggctact gtgatatgga
      421 cacttacttc accattgcat taagctctaa tctccgggcc agctgataga ggcagttaat
      481 gaatagctgg agtaccacct cggtatgctt cacaattctt ctgatctcag taggatgttt
      541 cgagtactgt gatcttgtgc ttagtaacac cccagttctt ccccc
//
LOCUS       KCLJ01002433             705 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 271689cal ultra-conserved element locus
            uce-1560, sequence.
ACCESSION   KCLJ01002433
VERSION     KCLJ01002433.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 705)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 705)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..705
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="271689cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>705
                     /note="ultra-conserved element locus uce-1560"
BASE COUNT          204 a          173 c          130 g          198 t
ORIGIN      
        1 gagcagattt ctacagtcct ggaatgagag accccgcaga aactgcttca gctaagcacc
       61 agacacatta aaatttttca attacgtaag gaaggaggcc ctccttgctg ttagtccaaa
      121 acaaacatgt gagatttata ttagctattg ttaattttgg ataaagctgt ttatatgaag
      181 aacatagttt tctgccatta ataataataa taaaaacccc acaatgccat tttgaaattc
      241 tggacatagt ttcccccaat ttcaattgct ctcgctccct gagcatttat cagctacctg
      301 attagaattt gtttccacac aaaccattga tcatcagcct attactaggc aaatgacagt
      361 taattaccca ctacattaac cactgggacc tgagacctgc ttctgctgcc atcagtcaac
      421 atgataaatg tggcaagttc agtaatgcat ggccagccct gagctgcctg ctatagtgtg
      481 aacaaccctc aatctcactt ccaggcccag gaaaatctat ggcaatctgc ataattacaa
      541 gctctgggtt aataacagac aaatgatttg ttgcatctaa acaaagtcct tggaatgggc
      601 ctggtctcct gtggctgccc gggctgctgt tgtggcacca gtgtgcttcc tgctacaacg
      661 tgcacaaaac acatccccgg cgctgtaccc ttccaatttg ttgcc
//
LOCUS       KCLJ01002434             762 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 271797cal ultra-conserved element locus
            uce-2953, sequence.
ACCESSION   KCLJ01002434
VERSION     KCLJ01002434.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 762)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 762)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..762
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="271797cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>762
                     /note="ultra-conserved element locus uce-2953"
BASE COUNT          233 a          182 c          154 g          193 t
ORIGIN      
        1 agtgctgtta aaaacaaagc agttttttag gcacttatgt gctccagata atacaccaat
       61 gacactaaat tgaactcatt tagctgtaaa catgatatta catttgacag cttccagtgg
      121 taaaatacca gacagtccac gctgaggaga aaagaaacaa tatggaagga gaaaaactca
      181 tcaaaaaaga agccacaaaa gggccaacaa aaaaataccc aacaaaaccc cagcattttt
      241 cagtggttac agtcataact cagcacagac acgcatggta ccaaatgcaa cctgcccagt
      301 ttaaacagcg gagagcaggc gctggagttt atgttgttcc cctgtttatt aaaaacggat
      361 gggagcactt gacagaaaaa tcaaacttct ggtcacagct cattaatctc tgttgtatct
      421 gtcagatatg tgtgtctaga gtttcaacaa ggctctagaa tcaagattac tgctgagctc
      481 tgttgttttc tctaattttg aatgagggga aatgctgcca atcaccctag gcaagagacg
      541 agcacagggc catggctgca accctttgca gccagcatct ccctgcccag tggtttggat
      601 ctgatttcag aggcagcaat tcctctttgc cttcctcacc aaagccagtt ttggctggct
      661 gcctcctctc cctttcccct gaaaaccaga ctcattgccc accaccaaag cacatgcctg
      721 tcagtgttaa ggtgatgatg aggttgatct gatgctcctt ca
//
LOCUS       KCLJ01002435             359 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 271906cal ultra-conserved element locus
            uce-7707, sequence.
ACCESSION   KCLJ01002435
VERSION     KCLJ01002435.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 359)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 359)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..359
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="271906cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>359
                     /note="ultra-conserved element locus uce-7707"
BASE COUNT          112 a           70 c           73 g          104 t
ORIGIN      
        1 ctcttctcct ggaaaagtta agcgtgactt agtaaacatt tgtaaatgca aataaacctc
       61 aaaccaggta gtttgggtgt agcaggacta attgcagaca atgaagctga aatgacttct
      121 ccaattagct gctggttgga gcttatttgg aggaactgtc agctctagcg atagataatt
      181 gctttattgc tcacaaaact atcatctatt tagaacatat gtgctaatta ctctggatgg
      241 gcgtcggaaa agagaccata aatctattag ccctttaaaa agtctaagtg aacgaccaaa
      301 ctcccttcct tggagcttaa gggcaagagt ctcgcctgta tggtactctt tccataaaa
//
LOCUS       KCLJ01002436             631 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 272014cal ultra-conserved element locus
            uce-2784, sequence.
ACCESSION   KCLJ01002436
VERSION     KCLJ01002436.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 631)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 631)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..631
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="272014cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>631
                     /note="ultra-conserved element locus uce-2784"
BASE COUNT          176 a          148 c          135 g          172 t
ORIGIN      
        1 ttcaaatgta tcccaggaat gcataatata attgaatatg gggcagaaag gggatcagtc
       61 cccgggagat ggtttcttca aacgagatgt tagtggtaga gtgagtttta tctccagtcc
      121 ttttatgaat cactgagaca caaacagagt acaccttgcc tttgctgtga gctgtgcctc
      181 aagccgtggg aagctgcctg ccattcacaa gccagtgcct tgtaggcagc tccatcttac
      241 ctgagttcgc agatgggcca ttccccaggt gggtctggca aaacacttct cattaatcat
      301 tgcttaaagc cctctcagtg ggaagacctc aggttagaca tcatttggaa acaaattggg
      361 tgaaaaatag ctctgacaat aaggagccca cacagaattc ccctgtgaga gcttcagcag
      421 tgtgaaaaca gactcttcca ggacactaaa tgatctgtca gttagcaaat gacattataa
      481 tccagtttta tgccactgac aaatcaaagc ctttgctgcg ttgcctcacc ccttcacctc
      541 ctttaaagtg acaaaatatt tcagtcagga gagatagcct tgtaaatgct tccagggaca
      601 aacctaagcc tttcttgttg tctctcttct t
//
LOCUS       KCLJ01002437             445 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 272125cal ultra-conserved element locus
            uce-2198, sequence.
ACCESSION   KCLJ01002437
VERSION     KCLJ01002437.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 445)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 445)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..445
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="272125cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>445
                     /note="ultra-conserved element locus uce-2198"
BASE COUNT          141 a           71 c           93 g          140 t
ORIGIN      
        1 atctgtagtc catcacttgg gtagactgtt cattttgtgg gaaccaccag tccaacagag
       61 tatcatttta aagacattct gtgggcttgt aatttgtaca caagtctgga gaagagcatt
      121 gaattaagaa aacttaattt tgacagccct gatatatagt ctattttggt taaccaaaag
      181 gaacacatac attttctaca ttagagaaat ttccattatt tttctctcag ccatgaaaat
      241 cgattttgat gtgattactc tcagaggctg cttgatgtgc ttctgacagt acggatagaa
      301 accgtgggtg gtgttgaatt gaggatactg tggttagctg aaccctgtca caaactgaaa
      361 atgctaggat taaaacacat gccattaaga tattgagcag gagaatgaaa acagtgataa
      421 caatattttg ttgttgaaga ttgca
//
LOCUS       KCLJ01002438             391 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 272231cal ultra-conserved element locus
            uce-4654, sequence.
ACCESSION   KCLJ01002438
VERSION     KCLJ01002438.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 391)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 391)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..391
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="272231cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>391
                     /note="ultra-conserved element locus uce-4654"
BASE COUNT          106 a           71 c          116 g           98 t
ORIGIN      
        1 tacatatgct ggctagtttc tctgttaggg ggagggaaaa aagaataaaa gtttaataaa
       61 cgtgtgctgt gttgtggatg actttgtggc gacctttgtt gcaaatggcc tatgcatgcg
      121 gaataatggt ctccgtgcag agagggaaat ggcttagtgc tatcatcgtt gcctcggtaa
      181 ccatcagagt ctccatctag cagagagaaa tgagttatga aaaggcttga gtgaagaagg
      241 gattaacaca tgatcccagg gacagcatgt caatcaaaat cagcggagaa attacactgc
      301 tctatttgag aatgtctccg gaaacgcggc ctcggtgggt ggatggatgc aggcgtggtg
      361 gagggcgcca tggctctcag cctcctatgg a
//
LOCUS       KCLJ01002439             611 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 272341cal ultra-conserved element locus
            uce-5566, sequence.
ACCESSION   KCLJ01002439
VERSION     KCLJ01002439.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 611)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 611)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..611
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="272341cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>611
                     /note="ultra-conserved element locus uce-5566"
BASE COUNT          189 a          113 c          100 g          209 t
ORIGIN      
        1 tttggacaga aagaatatac aaatctactt gtcattatga attttcactc cagctggctg
       61 cacatcttgc aacaagtatc atagtatttt tagaaacaat aaaacagttc ttcctcccta
      121 cctgtagagc cagctcttag tctccatcta ctgctgaact tgtttcactg ttactcacac
      181 cattgttaaa gtgcatgcta aaaattgtag attatttctg ttcactgcac actacattgt
      241 tttaccatgg ataatatttt atttataagg aaaataaatt gtcagagtta aaaaacacag
      301 tgcattttgt tctaggcaac acattgcttt tatcacacaa ataatttatt ggttctgctc
      361 ccagacgagt tctgtgctga cctttccagg tatactgaat attgctgcat aattcgtctt
      421 gttgggaaaa tgtatttatt ttagccatta atacatgctg tgataacctt tgtgttgagg
      481 agcaagtttg ctgttttaat tctgatactt tctacagagg gatatacgga aaacaaaact
      541 ttaaagcctt ttattctgaa gaggagagaa acctaccaca taagctttgg taatggctcg
      601 aaaactagaa c
//
LOCUS       KCLJ01002440             521 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 272451cal ultra-conserved element locus
            uce-3280, sequence.
ACCESSION   KCLJ01002440
VERSION     KCLJ01002440.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 521)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 521)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..521
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="272451cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>521
                     /note="ultra-conserved element locus uce-3280"
BASE COUNT          177 a          100 c           86 g          158 t
ORIGIN      
        1 agcatgaaat gatccctgtg gtagaaattt ctatggcatt ttatgcaccg aatccctttc
       61 cctcccacct cccacaattg atgaacagaa ttcagttaaa gggaatcaaa agggtagacc
      121 ttgtggaggc ctgccgtcaa agcctagctg tgtcagttgc acaggaagac accccttttc
      181 ttcctattac aagcaatcaa cataatggaa cattatgatt aatatcaggt agtgttaaca
      241 gctttaatta aagaaaaaat atgattgcat aaaagccaaa tgtcatagtg cataaattta
      301 gcaccaaatc atttgcaagt aaattgaaga attctttacc tgttgctttc tttctgttcc
      361 tctaatcatc tcatttttca caagacagag tttttaaaaa tactgttgat aaatcaactt
      421 aaacattagt aatgtctgtc agtataaaaa gcaaagttta ccaggcaagc aaacaggcaa
      481 acactgttac ttaaaggtgc ttctttgagg aagttcttta a
//
LOCUS       KCLJ01002441             977 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 272561cal ultra-conserved element locus
            uce-1423, sequence.
ACCESSION   KCLJ01002441
VERSION     KCLJ01002441.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 977)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 977)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..977
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="272561cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>977
                     /note="ultra-conserved element locus uce-1423"
BASE COUNT          301 a          206 c          178 g          292 t
ORIGIN      
        1 atgtaattta atagctgaga tggatattgt ttcacttgca gttatctgct ctatactccg
       61 gtctcattct acattagatg attaccttac tgtcctatat gcacaattta aagggaatta
      121 cctattactt caattatttg tttcttatca actgatgtta cactacaagg atttgcattg
      181 aaaggacaca aagaaagagc aagtcatggc acattgccaa ataaaagagt aatgttctgg
      241 tgaatttagc ccaaataatt tactgctata taaaagtgga aaagtggaag gtgaaccctt
      301 tgaccaataa atctcttctg catgtgaaac ccttatcttg tcccctccaa tatattccac
      361 actaggaagc catcatcatt ggctctggtt tgttatttgt aaaccttgat cttctgcact
      421 cggtgtccta aatatggata attagcatca gtttatcacg cctctgcata ttttctcttc
      481 tctccaaaca tgcatgcttc tattggctgc cattctgtca cagaagatta tggagacaga
      541 ttgcagagaa tgaatgtgct aaacgagatt aggaaggaat agaaatagca acttggccaa
      601 taaattcctc gtgagagcct tatcatacaa ttacacgttg acttgtttca cactctccca
      661 gcctcttaat ccaacgcccc caccaagaat aaaatttcac taatttctga attactgcat
      721 atcctcatga cttgtcactg agaatggttg gaaggagcaa cacggtcgaa aatagcacat
      781 caaacttcca aaagaaaaga aactttaccg acagaaagag atgtggcttt aaaccgccgc
      841 gtgtagaagc agcagcagtt tgaagggtca ggacttcaac atcaagacac ctctgcgctt
      901 ttgctgcctt tacatccagg gttaccttat ccttagagtg acttggggaa tacagagggt
      961 tgatgctgct aaactat
//
LOCUS       KCLJ01002442             529 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 272673cal ultra-conserved element locus
            uce-7245, sequence.
ACCESSION   KCLJ01002442
VERSION     KCLJ01002442.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 529)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 529)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..529
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="272673cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>529
                     /note="ultra-conserved element locus uce-7245"
BASE COUNT          187 a           93 c          111 g          138 t
ORIGIN      
        1 aagtaggatt gcatctttca gtgacaggaa acacagctga aggaaattac acaatgacaa
       61 gaagaactgt gagccaatag gaatataaaa cgtgttcacc ttcttgttat ctcacagcat
      121 tcagatgatc ataacagttt agaaagcata ccgcccacac cacaggatct tgctcctctt
      181 taattttctc taatttgtgt agtgaataac caaatactca taatgcaatt agaagataat
      241 caggcttgta attatgttaa ttgctggaga cttacatcaa tcctccagca aagtcatagg
      301 atttcagggg aactattaac atgggaagag agaggaagca cacatgagag agaaagagat
      361 tgggggagtg cgtaaattga tgaacagctt aggcttgtat cattgagcaa caatgagaat
      421 acaatggtgc aacaaatgaa aagggcctca aggggagaag ctcagaaaat gaggttttag
      481 gtaccagcaa ctcaacctct tttgtttgtt ttcttcccat aaataatca
//
LOCUS       KCLJ01002443             453 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 272779cal ultra-conserved element locus
            uce-1178, sequence.
ACCESSION   KCLJ01002443
VERSION     KCLJ01002443.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 453)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 453)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..453
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="272779cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>453
                     /note="ultra-conserved element locus uce-1178"
BASE COUNT          143 a           71 c           99 g          140 t
ORIGIN      
        1 ggggaatatc atttgggctg tatgattagg gcaggtgggg tggccattaa tttaagagag
       61 aagaatcgtg gcagcatggg ccaacttgca ctgtgttatc aatcaagcac ttcttgtgat
      121 gacccagcac tctcaggttt tcacagcgaa ttcatgacaa aatagatgca aggaaacgtt
      181 ttgtaccctt cataatttta tagagaattt attgttatta gaggaaccat ttgcttagtg
      241 tgattttttt cattaccagc ttgtcaacta gcatagataa tctggagaaa atatgaactc
      301 catagattgg gtgtcacttt tgttgatggt tcatatagtt taccttggag cacagctaat
      361 ggctgaagtt catagcaaca gcacagaaaa atgtggcatc tagtggaaga caaatgaacc
      421 atgtttattg ctttaatata aaaaatacat aaa
//
LOCUS       KCLJ01002444             348 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 272883cal ultra-conserved element locus
            uce-3212, sequence.
ACCESSION   KCLJ01002444
VERSION     KCLJ01002444.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 348)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 348)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..348
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="272883cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>348
                     /note="ultra-conserved element locus uce-3212"
BASE COUNT          102 a           67 c           43 g          136 t
ORIGIN      
        1 gggctgcatg tcctgggagt gctttgcccg caaaagtatt tcttttccat gcttgtttat
       61 ctgcttcatt catttgttat ctttctttca cagaatatct cagcattttt gtctaattta
      121 tcattttcat atttttaaag gtccccaggt gcatccaatt tttcaacttt accaaagatc
      181 tctccatctc tatcaaataa ttataacaac atgaacaaca gaaagtaagc aatatacctt
      241 aaaacatttt ttaattaatt accccagtgt aatataaaca aagttcattg tattataact
      301 cctcttataa ggaattgctt tgcaatattt ggcttgtgaa ttgttact
//
LOCUS       KCLJ01002445             418 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 272986cal ultra-conserved element locus
            uce-4960, sequence.
ACCESSION   KCLJ01002445
VERSION     KCLJ01002445.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 418)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 418)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..418
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="272986cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>418
                     /note="ultra-conserved element locus uce-4960"
BASE COUNT          141 a           94 c           63 g          120 t
ORIGIN      
        1 aagggaggtt taggcatttc ctaccccatc cccctcttct cctctgccta aagattactc
       61 tgcatcctag acaaaggaaa tatttaaact gttaaatctg aacaaagata cagtctgcgt
      121 atgacttctc tgaagcccta taaaaattct ttaaaattgc ctattcactc aaatttactg
      181 agtgtagcaa aaatgtcaaa ggcataaagt cagagaagat tgaataaaat aatgcagaaa
      241 gacagattag tcatgcacag acccacacag cctttcacag cacacaatac cactttttat
      301 taccgctcta tctttacaaa gactatgttc aatacataga ggatgataca tggtcagtca
      361 tgtaatctgc ctttgattcc aagactcatt tatctgggcc cttttcacaa agacattg
//
LOCUS       KCLJ01002446             613 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 273193cal ultra-conserved element locus
            uce-6246, sequence.
ACCESSION   KCLJ01002446
VERSION     KCLJ01002446.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 613)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 613)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..613
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="273193cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>613
                     /note="ultra-conserved element locus uce-6246"
BASE COUNT          200 a          115 c          111 g          187 t
ORIGIN      
        1 taacatggtt agtatttgag aatgtgggac cctccatagg cacaataaaa ttctcatatg
       61 ttttaattca tttacgcatg cttgtgttta atatgctttg cgaccatgcc tgcaattaat
      121 atgatttatg agaaaagacc atgtgcaata tttttttggg tacagtgata ctcccctcct
      181 gtgaatgaaa gatttaatga aacagctcaa ggaaaatggt tggcagttaa catattaagt
      241 tgaactgaca gaaccatgag taaactttag cacagttaat gatatcctct tatctgaccc
      301 tgacacattt gcagcatgta atttacagaa gctctgtcca gggaatcttg acaaatgctc
      361 ctaacgatgt cagggcaatg ttccattcta atgtaaaaca gatgtgggtc agataccctc
      421 attcatcact aacactgaaa attttaaact ccttccaaga tgaatggcat tacctgctgt
      481 tagctctctt cactgtagag aaatctctgc acaagaaaga acataaaagg attgttatca
      541 ctcactataa tgagaggtaa agttaattag ctatatggat ctatagctat aggatcctag
      601 aaccacactg ctg
//
LOCUS       KCLJ01002447             728 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 273300cal ultra-conserved element locus
            uce-1420, sequence.
ACCESSION   KCLJ01002447
VERSION     KCLJ01002447.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 728)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 728)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..728
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="273300cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>728
                     /note="ultra-conserved element locus uce-1420"
BASE COUNT          181 a          149 c          160 g          238 t
ORIGIN      
        1 ctgactggta ttttaaaaga acttttgcac acatttggat acagaagaga acaattaaat
       61 gccctctaat aattgatgta tatgcaatct atggcgtgca ttctcttctt attagaggct
      121 gtttttttgt tgcaatctag ctaataaagg ctttcttttc cacaagagaa ttttgacagg
      181 gttgactcca gacggctttc cagctgaggt ctggggcctt gctgaacctt caaaattttc
      241 ccatttgagc tgcatcaaag tgaaggaaat tcaaggatca ctaacgtctc agatggtagc
      301 acttgcccta acaaccaagg ttcaggaatt ctttggagca ggctgaggtc atttttctcc
      361 ccttttctcc taatgctttt ctctattaat cagagctcac agctcagatt ggtcttcaac
      421 ttcctcccaa tccttgctaa gcctgtcatt tctagctatt atttacttta atggactttg
      481 gctgatccct tatgaagctt tggatctgag aataataagg ctggagagta acgggcacag
      541 acatgggtgt gggtttgcct gcagattaac cgtggcagat gggctttatt gcggtttcct
      601 gtgtgccgag tgttgattga gagggtataa tgagagaggt ggtgtctgca caatggctgc
      661 agccacttca ttgcacctcg cgtctaaaca accccatttt tctaaatctt tgggttgtga
      721 aattttag
//
LOCUS       KCLJ01002448             717 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 273411cal ultra-conserved element locus
            uce-4212, sequence.
ACCESSION   KCLJ01002448
VERSION     KCLJ01002448.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 717)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 717)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..717
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="273411cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>717
                     /note="ultra-conserved element locus uce-4212"
BASE COUNT          201 a          169 c          121 g          226 t
ORIGIN      
        1 acacaatgaa agcttaattc tttgctcttc ccctttcttg tggctctggc caccggtccc
       61 tccacgcaag ccactctcgc aaacttgaga caatctacag gtcagctgta gccatttttg
      121 gagcagtgtg gatgtctgga agggcctgcc aagcgagagc catcaccatg gcaaggactc
      181 cctttctcac ccagctgtgg actatattgc atctgacatg atgagcatct cttgaatcta
      241 cctttcagat tttcggcaaa ccattttctc actgtccttc acaaagttga cattttcggc
      301 agcatgatag gaaagatgtc atgtcggctg cttttcaagt tgttgtcaca gtggttagca
      361 ccagttctgt catctttgct ttcctcacaa tcccccatct tgagccatgt cacaaataat
      421 aatacttccg atgtttttgt caaatttcaa atactataac ccagttgcac atctttggat
      481 ttactagtta tgttaatctt tgttgctcat cttcccagaa gctgaagcac tagaaactca
      541 ttaattagtg acaaatgcag gatatagata gaactggaaa aacactaccc aaagccttcc
      601 acttaattta ttagctcgat aattttgaaa cctaattaaa tattcaagtc aaatatactt
      661 tgaaaatata atctttctga gggaacatat ttattttccc ttttgcagga acacaaa
//
LOCUS       KCLJ01002449             612 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 273520cal ultra-conserved element locus
            uce-5675, sequence.
ACCESSION   KCLJ01002449
VERSION     KCLJ01002449.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 612)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 612)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..612
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="273520cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>612
                     /note="ultra-conserved element locus uce-5675"
BASE COUNT          185 a          119 c          129 g          179 t
ORIGIN      
        1 ttctttcagt aaggttttca taacctcatg gtacaactgc tgcccagttt ctatgggaaa
       61 cactaagtga aagaaaacca ctatttcacg gggccaacac agccttactg gagctttgtg
      121 agtacattta gggactggtt taattcagag tcggctaaca aacttgccat tttataaggt
      181 ttactctgaa tacctgcccc atttctgttt tgggagatgt tcatattatc tcttcagcac
      241 aggctgactg ttccctgcag ctctgctgac tcaaaataat gacttgtagg ggagctctaa
      301 tgacagaaca aggggcaatt acagacacag catgagcctt ggaaaaactg tgtgatgtat
      361 tttgtgcagt agattgaccc tgtgctcgag ttcatttggg ctctgctgct gtagatctgg
      421 cctatgcctg aaggtatatg gcttgttaat ctcaatataa gaagacagaa cagattagat
      481 caaatcagac cattcagaca aaagcaaaac tgctgtgctg ggacaataaa tgatagcaga
      541 aatatgtgac tccaaaatat tcctacagac agtaagatct gaaaaacaga ttattttttt
      601 aaagttgatc tg
//
LOCUS       KCLJ01002450             474 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 273624cal ultra-conserved element locus
            uce-1434, sequence.
ACCESSION   KCLJ01002450
VERSION     KCLJ01002450.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 474)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 474)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..474
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="273624cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>474
                     /note="ultra-conserved element locus uce-1434"
BASE COUNT          157 a           76 c           92 g          149 t
ORIGIN      
        1 ttttaaaatg catgtaagaa cattattaat ccctgtgtgc tgtcttaatt ttcagcttaa
       61 atttacagac atgctacatg gcaacagtgt taaagcaaaa aaggagggat acattttcct
      121 attcaataaa aagccatgga agttgcatgg ggtagagtct ctaggaaatc cactctttct
      181 ttgaaaaaat gtcattggtg agataggaga ttggcaccac aatgagcaaa atatagtgag
      241 ggctgatacg gactgtcagc tagaatttgg gttaagacac tgacttttgt ctgcatgatg
      301 cctaccttcc aaagaagatg gaagatgcaa aactgaaagt ttcctctctc tggttaatgt
      361 ggtctataca agtgaataat gtataagaag atgttccctt gataatgtca caattattca
      421 ttgtacagct ataaactcaa atattcacat taacagctag gtattatttt tctt
//
LOCUS       KCLJ01002451             636 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 273733cal ultra-conserved element locus
            uce-5777, sequence.
ACCESSION   KCLJ01002451
VERSION     KCLJ01002451.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 636)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 636)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..636
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="273733cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>636
                     /note="ultra-conserved element locus uce-5777"
BASE COUNT          207 a          126 c          126 g          177 t
ORIGIN      
        1 gaagcttcac acaagcagtt ggaaacaagt gtagagtaca aatttaatcc ccctaatccc
       61 ttgtcaatta caaggaatgt cctagagtaa agttgtatca acagtgcagt tttcaaaccc
      121 atagaaaaat aaatgaagcc atcctttccc tttttccact tggacttatt cactgtagct
      181 ccctgaaagg attaggaaca ctgtctgcaa taaacatggg catcaatttt taaaatctgc
      241 tctgaaaatg gcaacgtttc acaagctgtg aaaacgcttt ggtttagggc atggcctgag
      301 aggcaatagg ccagcaggat agcactggga ttagccctaa ttacctcatg tttcacctta
      361 attaactact gatacagaag gtaaactctg caggatctgt ggcgagacct taggccagta
      421 ggcaagatat ctaagccctt attgtttaca catgataatc tctcttttga atttgcttta
      481 attgctcaaa aagattagct gaaggatatg cattatgtat tgattagcaa tgctaactag
      541 atactgtact tccacaaatg cagcctagct tttagaggca catgtcgaag catcaacatc
      601 aataatgaag cggtaacatg aatggaggga ggaaaa
//
LOCUS       KCLJ01002452             686 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 273840cal ultra-conserved element locus
            uce-3584, sequence.
ACCESSION   KCLJ01002452
VERSION     KCLJ01002452.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 686)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 686)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..686
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="273840cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>686
                     /note="ultra-conserved element locus uce-3584"
BASE COUNT          177 a          161 c          124 g          224 t
ORIGIN      
        1 agctgtggca taattgtaat attattctga ttattagaaa taatggacag ggagcagaag
       61 tttttggcct tttggacagg ttataaatct cttctttatg ctgtcaagag taagggagaa
      121 acatatttca atagcaacaa attactacca ttatgctaac tgcaagatat cccactgtgc
      181 agttttgctt tgtgaatttt taccttcttc catgcacact tttagccact gatcgcacag
      241 cctttcagtg ttttctgcct tttcctttaa ataaactggc tctggctcct tccatctggt
      301 tccccttccg tcagcaaccc tgcacctgtt cacacctcct ctcctgttgg attccactga
      361 acatttcctc ctctgccagg gctattctgg cactcgcaac ctttctgtca ttcaatccat
      421 ctgtcagaag tgaactttgt ttaccgcaag cttctgcttt cttcttcaag aagcaaagcc
      481 cctcaaggtc attgtcaaat gaactgtcgg tgtagattta aatccacttc tgctaaccag
      541 cagcagatgt ttacagtcct gtatttgtga agatcagttt ggggtatagg agaaatagta
      601 agaagcaaaa gatcattatt tgttaactcc aacagctaac gtgctccttc ttgctagggc
      661 tagcacaatc tgagaaagac tttgca
//
LOCUS       KCLJ01002453             650 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 273952cal ultra-conserved element locus
            uce-2262, sequence.
ACCESSION   KCLJ01002453
VERSION     KCLJ01002453.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 650)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 650)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..650
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="273952cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>650
                     /note="ultra-conserved element locus uce-2262"
BASE COUNT          135 a          153 c          145 g          217 t
ORIGIN      
        1 tatcagtagc tttgtaaaaa aactgcttag ggaggatggg gttactgtga gtttaatgcc
       61 ttcattctcc tgtcccttgc tatatttttg gcaagtactt ttgattgttc atcttgtgac
      121 cctctagggt cttgcatcct taaaagccat cttgggggtt tgggatgtta atctttgcct
      181 tgtaaccttt atatgtgctg gtctcttgac ctgtcataat caccaagaat aaagcctgca
      241 cagacaagta gcacccaggt tgtgtcacta agtgcctgtg tcactgttgt cctgctgcag
      301 ataccgagtg gcaatctggg tatgtttggc aatagcggag cagcacaagc caggaccatg
      361 caacagccgc agcaaccgcc agtgcaacct cttaattcat cccagcctag tcttcgtgct
      421 caagtgcctc agtttctatc ccctcaggtc agattttccc tttccctgga actcttcccc
      481 tgcctggctg tgtctgtgtt tgtttcctag gcagatgtgg cgtggctgag tgttctcact
      541 tattacctct gagagcacat tcttctgagg catttgttct catcgaacac ttgagttatt
      601 atgattagag cctcttgtta attttttgat agtggtgatt ttccagctga
//
LOCUS       KCLJ01002454             563 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 274058cal ultra-conserved element locus
            uce-1662, sequence.
ACCESSION   KCLJ01002454
VERSION     KCLJ01002454.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 563)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 563)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..563
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="274058cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>563
                     /note="ultra-conserved element locus uce-1662"
BASE COUNT          170 a          125 c           98 g          170 t
ORIGIN      
        1 tcactttcta ccaagtgtat aatttatcat ctggttttgg tttttccctt catgaactct
       61 tgtggtattc caaatgtata atcttgttgt atttatttcc cagtggtcca acaaaatgca
      121 cagcaagtgc tgactagaac aaactaaaag gcagtgctat tgacaagccg tcacttgagc
      181 agtaatgaac actctgcctt tactttcacc tcaccaaact aacagcttta atttatgata
      241 aagcaaacga gagacaacct ccagttttat tataccctca gtgctgtttc aaatcaagta
      301 attagaaggt caagaggcag gtctagaaag ccaaacacaa atgcaagccc tctgcactga
      361 catttttaaa aatcttggct gttcaaagag cattttatcc atccctcttc tgcagagcag
      421 tgagaggcag tttttaccac cgtaaccaat ctgaaacagt gtagttcaat tctttgctga
      481 gtaattcagc ccatatgttc agagagatac ctagcagaca atgtcccttc tccaggcttc
      541 tgaaaggtac aggtgagctt tat
//
LOCUS       KCLJ01002455             472 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 274166cal ultra-conserved element locus
            uce-613, sequence.
ACCESSION   KCLJ01002455
VERSION     KCLJ01002455.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 472)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 472)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..472
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="274166cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>472
                     /note="ultra-conserved element locus uce-613"
BASE COUNT          192 a           57 c           67 g          156 t
ORIGIN      
        1 tttccttttc taatattcta ttggctaggg tcctctaagg tttactgttc tataaattac
       61 tgtaacaatt ctatctaatt taccatgcat tttctaaata gttaaatgtc ttctgcctag
      121 tgatacaaaa tatatgaaat attaaaaaaa tcgaaaaaga ggaaaaaata ggaattaaaa
      181 ggcatacatg gcctgttaac agatttcttt atttttcttg gtcaattctc taccatcatt
      241 ttggagtttg ggtagctgta aattttgaaa aattgacatt ttcagaaatt taagaaagga
      301 gaataaaact aacaacaatg ctaagcacac cagtacgaaa acaacaaatt tacacagaaa
      361 ttttagtgag taagttaaaa tgattggaaa tatagaactg cactgaaata gaatgttaaa
      421 atgtaaatac taaaatatgt atatataaat aatgtataat aagaataaat ag
//
LOCUS       KCLJ01002456             583 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 274276cal ultra-conserved element locus
            uce-8041, sequence.
ACCESSION   KCLJ01002456
VERSION     KCLJ01002456.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 583)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 583)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..583
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="274276cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>583
                     /note="ultra-conserved element locus uce-8041"
BASE COUNT          132 a          102 c          158 g          191 t
ORIGIN      
        1 ctggtggtag gtaggacagc tgtgaagttt tctgtggtgg ggtttttttt taacccaaat
       61 aaagctaaat ttcaagaaga agatcccttt ctccagaatt tcattaagtc ttttgccttc
      121 ctatctgccc catgcttttg cctatttgtg tgtgtgcgtg cacatatgcc tgctgcaaat
      181 ttttgtgtgt gcatatttat atcttggtgg ctgtgttgcc aaggagctct gaaagaaagc
      241 agagctgaga taacttctaa tccacctttc tgtgataatg tggtgcaagt gaaaaaagcc
      301 aggggtcttc tctaggtttg gtagactggg gcctttaaca ggcacttggg acttggctgt
      361 ctcagggtta gtgcttggca ggggagaaag caaatatctt ttgctcaagg aagacttaga
      421 aacagaatga atgtttcttg ggcctgggca gatggcaact gtgttatctg tgcttctatc
      481 agagtgctct gtttagtttt ccttgtccct tttggaaaag gagtcaagtt ggaggtgtgt
      541 gagtcctgcc tgggatgctt cctggttaag aagagggatg gac
//
LOCUS       KCLJ01002457             554 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 274381cal ultra-conserved element locus
            uce-3291, sequence.
ACCESSION   KCLJ01002457
VERSION     KCLJ01002457.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 554)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 554)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..554
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="274381cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>554
                     /note="ultra-conserved element locus uce-3291"
BASE COUNT          161 a          105 c          115 g          173 t
ORIGIN      
        1 ttttgctaag tctgtcttca ttacttcaac attgtgcatt tgctaatttg gaagcccctt
       61 cctattgaca gctctgctcc atacacctgc aagcaatttg cagagctcca atataggaga
      121 attgcagaga tggcagctcg cacctatttt acttcgcttt tctcaatgca cagcaaattt
      181 ggctttcagt gcgttatctc ttttgttaat gcaaaaagat tccctgggcg aaaaaattgc
      241 tcataattac cagagagatg gggaaactgc attagaataa ataaacctga aattactgta
      301 attatgttgt gtttgatggg ctcggcttgt aatcaagaag agaatacagt gaaatgatgc
      361 tgaccctctt gggtttgcag ctgtacgcgc actttggggt cagaaaagag tcattttgat
      421 catcattaag ctgtgtgtaa cctatttcag aagtgtttga aaatgaggcc ccaacaaggt
      481 cccaaaatta cattttgcca tttacgggca catccataag gttgtagagt gacaattggt
      541 aaaggtataa tatt
//
LOCUS       KCLJ01002458             516 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 274492cal ultra-conserved element locus
            uce-7627, sequence.
ACCESSION   KCLJ01002458
VERSION     KCLJ01002458.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 516)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 516)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..516
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="274492cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>516
                     /note="ultra-conserved element locus uce-7627"
BASE COUNT          174 a           78 c          122 g          142 t
ORIGIN      
        1 ggtagtttta atacagggga tccattcttg acagaaatga tgaaacagat ttatcacctc
       61 tcctggctgc ttacaacaag aatattaaca gtgatcttca aggctcaaat cacactactt
      121 ggaatgtgag ttaagagtaa ttctctgagt gactgaaacc tgtagccctt taaatcaaac
      181 taagcagtgt tttattaaag tgcccagcaa atcaatctaa atccagggat aataaagccc
      241 taatcaggtg gtagaaaaaa taataggttg tcatgcatga ggaaaaatag gcaatcatgg
      301 aatgttttct ttaattaggt tgtgtaaagt ggaaggactg agtaggaact ggcaagacat
      361 tcatcatgag caaggtggga aattattgag attactgagg aaggagaatt gagtgtgaaa
      421 tgctaagatt tgactggaca gaaaattaaa actggtttgc tgctcatggc acttgcttcg
      481 gcaggtatgg cttttccaag gagtgggaat ccagag
//
LOCUS       KCLJ01002459             712 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 274601cal ultra-conserved element locus
            uce-4641, sequence.
ACCESSION   KCLJ01002459
VERSION     KCLJ01002459.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 712)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 712)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..712
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="274601cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>712
                     /note="ultra-conserved element locus uce-4641"
BASE COUNT          209 a          157 c          142 g          204 t
ORIGIN      
        1 agaattcaca tctcagctgc ttgtgctgcc cacgggctca gtaccctgct caaacacttt
       61 ccacagggga gggggaaagc ctgtttaatt aggtgttgta taggaaggat gaactctatc
      121 ccaagtgagg gaggattgca tgtctcctcc agatggtgaa aaggcaggag gaaatgggac
      181 ctacctgtat tggttttaat cggcaacttt aggcaaactc agtgttctca tcagaaaagg
      241 ggaaaaataa acagctgagc actgtgattc atttacactt caaatatact ttgagttggt
      301 tattcctcaa ttaatcaaat agctggtgta tccctaaagt agtataaagt gacacgctgt
      361 gtgaaatcaa ttttcccttc caaaatcatt aaattcagta gcctgtgact acatccctgc
      421 taattctagt accggtcctt tcatcctcca ttaactttgg cacgcctaac aggctgtcaa
      481 aaataatttc ccagaacgta aataattcag aaattaaaaa ttaataaata ataacagaga
      541 gctactggga gatagactgg gtcaattagt cagctctgca ttctgtttct tcgcagcagg
      601 ggggcagcca cattcgttac tagaatcttt cctccgattc ctaggtctga tttacggctc
      661 ttcattactg gatccagtca gacacaatta cctccatcac tatctcagtt cc
//
LOCUS       KCLJ01002460             688 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 274709cal ultra-conserved element locus
            uce-2639, sequence.
ACCESSION   KCLJ01002460
VERSION     KCLJ01002460.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 688)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 688)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..688
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="274709cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>688
                     /note="ultra-conserved element locus uce-2639"
BASE COUNT          226 a          122 c          122 g          218 t
ORIGIN      
        1 tatctcaaac aaggtaagtg caaacataca gatttattca gatttgcaag catgcaacct
       61 gttacttaac tacatgaata ccttctctcc tagaccaaac tagtatctat atgtttgctt
      121 tcacgaacct agaatctttc ttcaggactc ctaaaacaag cagtgtcttt gaattctgaa
      181 atgacacaaa tatcaagaaa gtccacattg tgcaagaaag cagcagctat gtttctcaac
      241 ttggactaaa aatgaaaaga gaaaacaaaa accgttcact gaacagcaga ttagcagtaa
      301 tgttcctcat gaatcgataa gagtgcctga tgctgaatat ctaacagcaa atgctgaatt
      361 tgggtttaat attttaaagg tttattggag tttaagcttc ttgctgtgct ggtctcttca
      421 aatccctgat ctgtttaact aaataggtct tctcatcatt aaattgttcg tcctcggtcc
      481 tgtcattctg aaacttgctg aggaactcaa taagtttggt ctggttcttt agaaggatgt
      541 ctaatatagg ctgtgtcttg ttaggattgg ctacaaacac ctgcaagggc attgagcaca
      601 aacaaaaggt taagtttgat gatgataaat taaaactatg ttttaattat ttcagtgttt
      661 ttaaataaaa ggcataagct gaacatca
//
LOCUS       KCLJ01002461             821 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 274822cal ultra-conserved element locus
            uce-83, sequence.
ACCESSION   KCLJ01002461
VERSION     KCLJ01002461.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 821)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 821)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..821
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="274822cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>821
                     /note="ultra-conserved element locus uce-83"
BASE COUNT          244 a          138 c          168 g          271 t
ORIGIN      
        1 tcttatgaca gttttcattt ttttccctcc tcctgacagt tcccataatg actttaatca
       61 tatagtctgg aaatggagca ggttactgaa cagcaacaaa ctcactggtc aatgtcggtg
      121 tcacttttct gggagcagga ctttttgagc atcaaggaac taattttaac agcctgctgg
      181 aaaagtgtta agtgcattaa ctccctgtca atcatgctgg ccaatttagc tcgagacatt
      241 ctattgaaac ttatttgtat ggtattctta tctgtgtacc ttatgtgact aatgatgatt
      301 gtttatggag aggtgcctgt ccaattattt ttgaaggaac acaagaatgc agaatgactg
      361 gaagcatcag gtttttgcca gagaatgcct caggtaagag gagaatggct agaggctata
      421 aggaatcaca agagacaagt cagagtcgta aattggaaaa ctgacatatc tcatctaata
      481 tacttgctaa ctaggccttt aaaaaccttg acatttaact aagtttgtgg aaaagttata
      541 tattttgtcc ttttctattg gctataactc attaatatga tgaactgagg tgtttataat
      601 tattatcagc attagctgac tagcgatcat ttagagatcc agttaagcac ctaacaactg
      661 ctcagttgtt tgtgtaggtt gtgccttttt caaaggtcaa aaatgatatt gcaagttatt
      721 tacccttttg gtacttcagt gtgtgaaata ggatgaaaga atgctggtat tcagctgagg
      781 catttaaata atgctttgga agtcctggcc tgcttagaac a
//
LOCUS       KCLJ01002462             497 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 274934cal ultra-conserved element locus
            uce-230, sequence.
ACCESSION   KCLJ01002462
VERSION     KCLJ01002462.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 497)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 497)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..497
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="274934cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>497
                     /note="ultra-conserved element locus uce-230"
BASE COUNT          193 a           54 c           93 g          157 t
ORIGIN      
        1 aaactgtcca tgttcaagtg tttacactta aaagagattt aaacaattta agattaagtt
       61 gactatggaa aaaaattaat aatagattaa tacatgaaaa tctatgaagt cacataagat
      121 aatgatttaa aaaggaataa tttaaaaaga tgaattaaaa agtagaatca gaaaagaagg
      181 ccaacataaa ctagggaaaa acatgctgtg aataaagtct gttagatctt gaaataggag
      241 aactgctaaa taatgcatag ttttattttt ctataatttg cataaacctt aagagagtat
      301 ttatttgtgt aaaacttgat gtatcgagga aggagaatta aaaaaaatgg cattcatttt
      361 gttttcattt tggtatttag gaaaaatatt ctgttacata tggactactt agacctaatc
      421 atctgactga atgtgatgtg tttcttgagc caggttggaa agggctggct tgagaacagt
      481 gccctggtct tgctgca
//
LOCUS       KCLJ01002463             807 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 275040cal ultra-conserved element locus
            uce-5539, sequence.
ACCESSION   KCLJ01002463
VERSION     KCLJ01002463.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 807)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 807)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..807
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="275040cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>807
                     /note="ultra-conserved element locus uce-5539"
BASE COUNT          243 a          140 c          164 g          260 t
ORIGIN      
        1 gaccacacag agcaggggag ttttttaata ggctgtttgg ggaagagtgg tgtgtagact
       61 ttgagatctt tactgggagc cttatttgct tttggttgcc ccttccatgc cactcccttt
      121 aatttgatgg aaagccagca gtactgcagt tttatgcaag acctccagtg aactcaaaaa
      181 agattattat ttctcacttt gtctttacag ataactttta tgcgtcagaa cgcaggatta
      241 tctgaagaca caaatgcaac acaacactga caaaatcaga tgaaaaatct cactctttta
      301 actaaaatta gatttatcat cagaaaagca ttctcttttc attttctgaa aggtgctttt
      361 tgacagaccc tttgcagtgg acgtcatgct cacaaaacat gctgtcacag ggctatttga
      421 atatggtgac aggctcatta tcatgttgaa gacaactgac aacactgcag actagaaatg
      481 gacaggcttg ccaatcagct gttgaaagga ttgcagttga aatagagttt tttttgttct
      541 gagaacagta gtacaaattg actacattaa ttctttttat tatggttgca tacactgtag
      601 ttaagggtcc gtcactgttt ccattataaa tccctgtttt caagggttta ttagtagacc
      661 ataaaaatgg ttcctcttga aattttgcat atatattacc cttacagaac aaaatttctg
      721 tggtaactgt gtggaggtgg gagggcagag aaagagggat tgactgattt tagctgaaaa
      781 ttgcataaag ctgaatgcat tattatt
//
LOCUS       KCLJ01002464             630 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 275151cal ultra-conserved element locus
            uce-6519, sequence.
ACCESSION   KCLJ01002464
VERSION     KCLJ01002464.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 630)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 630)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..630
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="275151cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>630
                     /note="ultra-conserved element locus uce-6519"
BASE COUNT          205 a          116 c          112 g          197 t
ORIGIN      
        1 aagagctttt atttctgtcc catcatctca aattatcttg tttaccccct gagttctgag
       61 caggtaccat tactgcagtc agttgtccac atcatctttt gaagggaaaa ttaattctga
      121 attactggcc ctataactgc ctacttcttc acatcatctg tcagcaaaat aagcagacaa
      181 aagctggcta agtggatttc tgttagctgt catttaaaag gaaagggaca ggtgttgaat
      241 gaagcttctt tctctgactg ctagttaaca atacatatag aagaagttta attgcttgca
      301 tccacctgca cccttgtcat ttcctggctt tattgatttt aatgaaaata ttaagtgcac
      361 ttcaggagca acagctaaag tgacatgttg attgaaatat acaggaaaat gtataataga
      421 agcaggctat tactatttta atagaatctg aaagaagtaa catctagaga agcagctatt
      481 cttctgcata gagcaagttc tgaaatgagt aattggaaga tgaataaatg tttggtcatt
      541 gttaaagcaa tctttcactc taataaaaag tgacccaggc catattttat tccattaggt
      601 acccttcagg gtgccacata aacacaacaa
//
LOCUS       KCLJ01002465             579 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 275263cal ultra-conserved element locus
            uce-912, sequence.
ACCESSION   KCLJ01002465
VERSION     KCLJ01002465.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 579)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 579)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..579
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="275263cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>579
                     /note="ultra-conserved element locus uce-912"
BASE COUNT          155 a          121 c          105 g          198 t
ORIGIN      
        1 tttgaagttt tcccacctcc cccacccctt agtttctcaa atattttttg gccttttttt
       61 ttaatctttt ctctctgttt gtaataagat taattatgtg tggtgcacca ctgcttatcc
      121 ccatgaaaga aaatctaaaa cgagggattt cagcttcaag aaggctattt tgtcctgttt
      181 ccgatgttct aaagggatta atttaccata tcgtatagcc ctggaagact gtgataattg
      241 aaaacatcca tattcattgc atgttcaaag ggatctgtct gactttgtaa tgtaaaaagt
      301 gcatttttaa cctgaacggg gacctgcatc tggtattgct taatcctatt agtccgacag
      361 ttccaaagct ttagtgtata atcattagct cgtgttaatc ctcagacatg cctccagctt
      421 cagcctgtca gaaggagtcc ctgtagggaa aatatggagg tgctgatagc acaacaccaa
      481 ctaatcttat cttaaatgct agcagcagcc tctatctgtg atagccaggg atttaaaaac
      541 aaatttttta tgggtattgg gtatcgcttt cccttccct
//
LOCUS       KCLJ01002466             630 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 275372cal ultra-conserved element locus
            uce-7044, sequence.
ACCESSION   KCLJ01002466
VERSION     KCLJ01002466.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 630)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 630)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..630
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="275372cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>630
                     /note="ultra-conserved element locus uce-7044"
BASE COUNT          203 a          105 c          102 g          220 t
ORIGIN      
        1 attaaaggta attattaaac ttcaagtttc agcaaatgct taaaatacaa tgtgtggtag
       61 gagctcatat aaactgcacc tgtaagtgac atctttgcag tgctcttgta cataggaggc
      121 tcaaagctat ttcttgccag cagcagtgat ctgcagactt tagatgttgt taaaaagctt
      181 acaatatcag cagggcaact gctgcctcca ttagaaacat gatactaaga tgctgattaa
      241 taccaggagg gggctttaat cagccaaagc catatgctat ttcacttaag atgaaagtgc
      301 aaatgataat cattatttca gaaaggatgt atttaaaaga agagcagaac agcaagtggc
      361 atctttttat cattagagct tcttcatgca gacccttttt ttctaaagct tcataagctt
      421 ttatgaacat ctggatcatt tcttcattat ataggctttc aatatcatta tgtttgatgt
      481 agtgttttta gtggagttat gctaaatgtc taaatataca attaattcct attaattata
      541 gttttcaaac tggtgaaatt atccatcatt aacttaatca cttgcatttt atcttaaaat
      601 tgtattcact cttttataat ccctacatct
//
LOCUS       KCLJ01002467             702 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 275483cal ultra-conserved element locus
            uce-1395, sequence.
ACCESSION   KCLJ01002467
VERSION     KCLJ01002467.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 702)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 702)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..702
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="275483cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>702
                     /note="ultra-conserved element locus uce-1395"
BASE COUNT          218 a          127 c          177 g          180 t
ORIGIN      
        1 tccagcctta tggaacaaga tgccagcatt aaagctgaca agaagtgtag gcaggattgt
       61 ttccttctat gtgtgccatc acattttagg tggccacaaa ccaatgacta aaagttgaca
      121 gtcaaccagc accaaacagg ttttcttcag gtggttgttg caggggagtc agaagctcct
      181 ctctgacaca gacctggttg gcaatgtgga gggaggaaag aggtaatgga gggaaaagaa
      241 atcttacctt ggcttcacca gtggcaacat gagcatatgc aattataaga tagctggcag
      301 atgacagagt tagttaatgt aacaagccct gtaaagcatt tagccacatt ctagtgttta
      361 atcagctgtg taaagtgcaa tatctatctt tcaattttat gccattaagg gagacaagat
      421 tttgattagg tacttaatct gggcaagagg aaaacaggcc cagagcaagc ccacaatagg
      481 cagcaaaagg gacattcgac gaaggattcg ataaaggaga aagacagaaa tttaacataa
      541 aagagaatta gtgcagctcc tttcaattta gtgcacagat ttttatggac taatcaatta
      601 gaggctgtgg ctgtgctgct gggaagtggt gctgtgttag aggctttgcc atattaattc
      661 tgttcattac cccggggtca gacggagtgc ttcggagaag cc
//
LOCUS       KCLJ01002468             591 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 275589cal ultra-conserved element locus
            uce-5667, sequence.
ACCESSION   KCLJ01002468
VERSION     KCLJ01002468.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 591)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 591)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..591
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="275589cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>591
                     /note="ultra-conserved element locus uce-5667"
BASE COUNT          191 a          127 c          142 g          131 t
ORIGIN      
        1 ttgtgctttc aaagcctcag ctggcaacaa tgctagaaca aataaaactg ataccatcca
       61 ataaatacaa ggtgtatttc ttaagagtgg cattctttaa ttgccatgac actacatatg
      121 aagaaatcct ctctaaaaac tccagagcag cctttgcaga gcctccatcc aagaaataat
      181 gcagcacaag gctcagtaag ctcaccattg cctgtgcgcc tggcggagct gactaaaaga
      241 ccagtagcag ctggcaggaa atgggtaaga aagctgacca cagataaact gtaggatgct
      301 gaagagtagc agaagatata ctctgggaga ggaagccaag ttgtcaggtc acaccgtagt
      361 ctagtgcata cagtacatac agtccctatt gaagtatgcg gccaccagat aatggtcagg
      421 gacacagctg tcaggcaacg atgaggtaac tccaaggagc ctgaagcaga gtgtggtaca
      481 gctgcggatg tttctgttgg gcaggataaa gcctgcctgt ctcaagggta ccatagcaaa
      541 cgcagtgtca tgtgagcagt actaaataat taggttcaat ttaaatcagc a
//
LOCUS       KCLJ01002469             651 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 275696cal ultra-conserved element locus
            uce-6105, sequence.
ACCESSION   KCLJ01002469
VERSION     KCLJ01002469.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 651)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 651)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..651
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="275696cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>651
                     /note="ultra-conserved element locus uce-6105"
BASE COUNT          207 a          128 c          159 g          157 t
ORIGIN      
        1 gggatggcgg ggacttagaa ttgctcagta ggaaggactg acagtctctg gtagattatc
       61 ccggatagcc agaccttgtt atatggtttt catcacaaac ataaaagtac ttggtataaa
      121 acagaaggtc aggaaggttt aagacatggt atatgagaaa acattttcca gatttcagct
      181 tcctccaagg taatatgcaa gtgtaattaa aacagaacct ggaaatatag agtacagtac
      241 cctattgaaa gtgtgttgta tgagctgaac tcccttcatt gatagttttc caaaacacac
      301 agctgcaata atctttatcc aggagaaggg aataaattaa gtctgaacac ctctgcatat
      361 agtacagtac agtgtatagc cctgcacccc atataacctc ggagaggtaa tggaaagccg
      421 aaggaggcgc aagtggaaaa cctctctgac cagcaaacac tttcttcttc tgaaagcaga
      481 cagatgggaa gaaaagctca tgaaacagag gcagcttaag tactgggatg tctcatttct
      541 gctcaagtcg ttgaggctct gcagtggcag ggtgccaaag cacactccag atttgacagg
      601 tggggagggg aacgtcctgg gcttgcccag caaacagaga ctattgatgg c
//
LOCUS       KCLJ01002470             607 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 275802cal ultra-conserved element locus
            uce-6945, sequence.
ACCESSION   KCLJ01002470
VERSION     KCLJ01002470.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 607)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 607)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..607
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="275802cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>607
                     /note="ultra-conserved element locus uce-6945"
BASE COUNT          197 a          105 c          131 g          174 t
ORIGIN      
        1 tcagcacttt ccatttcatt ttttgaatta ttaaaagatc aaatgttgga atgctggata
       61 gcctgaattc atttgtcaga tcacgaagta ctcataacat ttctcagcct taataacaca
      121 tctgctctta aaatgtggtc tcttgataat agctggctga aagtgtctga atttagggat
      181 tatttgagac aacagatttc cttctatttg gaattgaatg aggcatctgc tccctcaccg
      241 tcagctttgt gggatattct caaggcaatc ataaaagggc agatcatttt gtacattatg
      301 agaaggaaaa aagacctctg ttggcaatta agagacttgg aagggtgaat tagagacccg
      361 caaaggtacc acttcatgtc taaaaattct agctacgcca tccattcggg acacagattt
      421 atctgatgag tggagaggga gggggcaatt ctcccatcaa aggcaaagaa agaaaattaa
      481 tcaggaaagg atatatcttg gataactgac ccaacaacat attagagaga ttaggactca
      541 ggatggagag caaggcatgg atcccttgga ggattaaagg aaattttgcc aatatttatg
      601 ccagttt
//
LOCUS       KCLJ01002471             820 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 275913cal ultra-conserved element locus
            uce-1530, sequence.
ACCESSION   KCLJ01002471
VERSION     KCLJ01002471.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 820)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 820)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..820
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="275913cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>820
                     /note="ultra-conserved element locus uce-1530"
BASE COUNT          225 a          172 c          155 g          268 t
ORIGIN      
        1 ggttttattt gcatttttca aacctatatg ccatagcaca cattgtggct attggtatgc
       61 acggacacat tctaatattg tcccccacaa caaaaaccat cattctggca aaaggagaca
      121 ggaaaatcta acactctcct accatgacca agatggtaag agctgctgca gttgccaaat
      181 acaatacaca aaacatttaa tttataatag ttagaacttg gcccttgacc aagtccaaag
      241 aactatgtct tatttcactt gctcttgaat atgtctcttt cagagataaa tgactgtgct
      301 gtttgccagt tctctcctct gtttggcgtt ttgtttagct ctgcttgtga caagccaaga
      361 gttgatgcat ctgcttgaat gtgtaatata catctttggt caacttagct tttttccttg
      421 acaatattat gtcaaacaat cacatcacaa ccggctctga tctctttgtt gttagctaat
      481 aaattaaaga gtatttatta tctgcaatcc ttttttccct tttaatggtg acacatttgt
      541 ggtgaattac agggcagctt tataaactag gctgtgggcc agtatcagcc cctgcgttca
      601 tgtgaatgtt ccctctccca cttggcctcc cagcctggtg gtaaatcaag gcagctgtca
      661 cagcacacta agttagtgtg cgtcattggg gagagcagga agcgttgggg gtataattct
      721 gtccatcaaa ctaatatgtt atatcagtag ctttgtaatc ttctgctata agttatggga
      781 agtgacacct aagaattcac tttgaaagca atgtgttcct
//
LOCUS       KCLJ01002472             435 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 276026cal ultra-conserved element locus
            uce-3601, sequence.
ACCESSION   KCLJ01002472
VERSION     KCLJ01002472.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 435)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 435)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..435
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="276026cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>435
                     /note="ultra-conserved element locus uce-3601"
BASE COUNT          172 a           71 c           83 g          109 t
ORIGIN      
        1 tgttacatcc aagcatcagc aaaacattgg agttatttat gagcaatgaa atcagccaaa
       61 tgtaacatgc agactgtgca tggtttgaac acaaacctgc catcgtaaaa ttgtaagctc
      121 ctgaagcact gaactgcacg atggttgatt atcaattaat ttaaaaaatg aaaacaaatc
      181 agatggattc tattcagcaa tagaaagtaa agtccagtag gactaccttc ctacgtatgg
      241 agatcatttc ttgtagttta gcttccataa catattgata atcatcagat gaggtagaag
      301 aggttggatc agactaacaa gtcaaggaaa aggagaggga caaaattgaa aaatcagaac
      361 taaagacact gacactgaac agaacacagc acagaatgct taaaagaaaa gtgtgactga
      421 aaatttaata ctttt
//
LOCUS       KCLJ01002473             692 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 276133cal ultra-conserved element locus
            uce-4789, sequence.
ACCESSION   KCLJ01002473
VERSION     KCLJ01002473.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 692)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 692)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..692
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="276133cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>692
                     /note="ultra-conserved element locus uce-4789"
BASE COUNT          174 a          180 c          118 g          220 t
ORIGIN      
        1 tttttgtcac atctcatgcc tttcatttgg cttaattgtt tcattgtaga tgacgagcat
       61 ctgtgtgtag gatgctgaga gggtaaaaca gcatttcttt gcctctggcc tcattcccag
      121 cctcgctcct aaggaatagc tgctggccct gccccagccc catcctggtg tttggatcat
      181 gctgctgtca gccaggtcct ttggcacagg attactgaat atgtttccac cttcttctgg
      241 caggattcct ttcaatgaag atcccaatcc caatacatat tcatcaggac cctccacccc
      301 tctgaaaaac caaacctatt ccttttcacc ttccaagtcc tacagtcgac agtcctcttc
      361 ttctgacaca gatttgagtt tgacacccaa aactggtaag gcacttccac ccactttaag
      421 ttgtttttat attttcattc aaccccttta agttatcaaa atgatgggag acctcacttt
      481 ctgcagggtc agaatttcaa tcctgcctgt ttccactgtc ctggataaca tgaaaattgt
      541 aacacaactt gaagtgaaaa taaaccagag cattaaggga gtcctaagta attgcctttt
      601 ccttatttcc tccatttcat atcataggag tgtatttctc accacaatat gattactaaa
      661 accatgtagc cttcaagcct actgtgttgg gc
//
LOCUS       KCLJ01002474             718 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 276241cal ultra-conserved element locus
            uce-7673, sequence.
ACCESSION   KCLJ01002474
VERSION     KCLJ01002474.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 718)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 718)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..718
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="276241cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>718
                     /note="ultra-conserved element locus uce-7673"
BASE COUNT          176 a          170 c          155 g          217 t
ORIGIN      
        1 ggcaccattc ttgtgccttc tggtctggaa tgaagtgtgt agctgaattg tctcaaaaaa
       61 tttgaaataa gcacaaaaag atgatacatt attacagccc cgccccctcc ccaagccctg
      121 gattctagct cagttagaga gctttttcca caagtgtatg ttagcttttt ggacatgtaa
      181 gacacccagg aaatccccct tctcgtaaca ttctccgctt ggatctgatc tcaacagggt
      241 gtcgtagtca atcttcagca cagttcttaa gtggagacca agaaccctgg gcctttagag
      301 gtggtctagc aggagagttc caggtatcaa tatgacttca caactgaatg acattttctt
      361 tgttttatga gaaacctttt gttgcacatc agaggtctgg aaggattggt ctgccgaagg
      421 ctttctggtc caaagcccat tagccttaca gcttggttta aaataatttt cctccccttt
      481 ctacagtaat ttctcaagga gatgctgcct gtcccacgcg catgcgaagc gcagcggctt
      541 tagttgtaca tttcacattg tttctttgca ggtcgcacag catttttacc tgcgcccgca
      601 attgcacaat gcgcgcatgc ttgtctgcca atgggaattc catgagcatc atcgtccaaa
      661 ttttggttcc tgtggaaata atgctgtact gtgctttact gcgaggaatt caattggc
//
LOCUS       KCLJ01002475             645 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 276353cal ultra-conserved element locus
            uce-1133, sequence.
ACCESSION   KCLJ01002475
VERSION     KCLJ01002475.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 645)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 645)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..645
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="276353cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>645
                     /note="ultra-conserved element locus uce-1133"
BASE COUNT          202 a          105 c          116 g          222 t
ORIGIN      
        1 ttatgatgca tttcctgtga gctgcttggt ttgcgctgct caggtaaaat gagttggcag
       61 tatggtgtca agaataaact ttaaaaggac tctctaaaag taatgcttgg aaggtattca
      121 tttgaccttc agtgacagag cttatgcctt gcaaattgat taatacagat acaatatcaa
      181 atcatttttc atacaatttt ttaatgtttg ttaaatgctg gagcagtatg taaacagagt
      241 atttggcatt tttattaggc tgcggaactc agtcatttcc tttgcaacaa catctcataa
      301 actattttga cagtctaata aactataaaa agctgtggta aaaactggct ctgaatgtta
      361 taaccgtaca aaatggaaag agcaagagaa aacatctatc actgagatta ttatcactgt
      421 tgccatggta acctggttgc aatggcaata tctccatggt tctgctgttt gttatcatct
      481 ttcttgattt tacatcattg aaattgtagt aattacactc tgcctgatga aaaatgcatg
      541 ctgtcatggc aactaagtca aatattctta atcatttcac ctcttcaatc taaaatgtaa
      601 ttgtttgtca gtaaaatagg ttatacggaa ggcttctatg gactt
//
LOCUS       KCLJ01002476             617 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 276463cal ultra-conserved element locus
            uce-748, sequence.
ACCESSION   KCLJ01002476
VERSION     KCLJ01002476.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 617)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 617)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..617
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="276463cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>617
                     /note="ultra-conserved element locus uce-748"
BASE COUNT          189 a          117 c          140 g          171 t
ORIGIN      
        1 ctagacacct cttttaattc actaatctaa agggaaaaaa aataaggtac tgctgttagt
       61 acattatttc tgcttaacag acaatatcag taattaaata tatttctgct ggttttgtga
      121 ccatatgcct gcaaaatgta attcttttaa atgtcttttg ttcccagcac tgactgcctg
      181 tcagagtgaa ccctccagat tcctgtgtgt tggtatccat gggctctttc ttgccaagct
      241 gccagtctgg agcgtcacac cttactgcct ttaaagattg ccctgcagag atagaggaaa
      301 atggcaattt ttacatgatg cagtctggca gcccaggaga tttgaagtca aaactggtgc
      361 caagatttac ccaggagagc aagcagaggc gaatgtgggc caaagaagag ggaagaaaaa
      421 ggcaggaaag catggcagag tgttttttta tcaagcatgg aacacatgga cactacatgt
      481 tgcttgcatg catttgttga gagggtcagg gtcctaaaga aagtcaaaag gaagaggtca
      541 gctttttttg catggcccaa attgtagtag attgcagaat gcaaatgaga caattattac
      601 accaatgctc atcaagc
//
LOCUS       KCLJ01002477             632 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 276574cal ultra-conserved element locus
            uce-7775, sequence.
ACCESSION   KCLJ01002477
VERSION     KCLJ01002477.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 632)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 632)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..632
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="276574cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>632
                     /note="ultra-conserved element locus uce-7775"
BASE COUNT          204 a          109 c           99 g          220 t
ORIGIN      
        1 taattgcaaa atatcaatct atctcactta tgaatatgca aatgttatgt cagagtggca
       61 taagtttcca gcgcacagta ctctgctagc tttaattaga tcaaaagtgg gtccagttca
      121 attcaacaag atgggcccta ctctttaatc aggaaaataa gtttgtctcc taacagtatc
      181 ttcttttgac agtcagcaaa cactaattaa cagacatagc tgtattaatt gcattactcc
      241 actgtattct tatcagctgg ctgatgttgc ctgtttgcta atgcaaatag ttgctgcttt
      301 ggtaaagtca acttgcaaaa gtctttctaa tgctaactag caatcaatgc atataagatt
      361 tctaagattt ctgtagggaa ttctgcataa tagatgtatt ctgtcttttg aggtatccac
      421 ggccatttag tataattatt ccttagagct acacctatca tattatcagc tttttggagg
      481 ataaagaaca caacttattt gtttaagaac aaaggactat tataatttcc tttaggaatc
      541 actaaatcac tatgttaaat gaagatgtat gacccaatgg aaaacttgta tttatagtaa
      601 ttaccttaag attcttttag catcttttaa aa
//
LOCUS       KCLJ01002478             752 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 276682cal ultra-conserved element locus
            uce-6084, sequence.
ACCESSION   KCLJ01002478
VERSION     KCLJ01002478.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 752)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 752)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..752
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="276682cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>752
                     /note="ultra-conserved element locus uce-6084"
BASE COUNT          193 a          200 c          203 g          156 t
ORIGIN      
        1 aggagttgaa tgaagcaaca agttctgcac acctggctga cagccaagac ttcctcctca
       61 aagtgcagta atcgatttct aaaaaggtgc agcacccagg tggaatccag gtaccagcct
      121 gacaccagcc ctggaagagg aaggcgcttg gagaaaattg gaaacacgca aggagcaaca
      181 tttcttctcc cccagctgcc agaggaggcc aatcaggact tggaccccca tctctgcccc
      241 gcacaacccc atcccaaaag cagggagggg agaggactaa cgagctgctg attgccggag
      301 agcagatcgc agaggctcca ctccgtctgc ccagtgttca gactacctgt tcaggactac
      361 gagattgtac agtagtctgc acattggtta ggctgtgctg ggatacacca cacactgcca
      421 gtgctgcacg gggacggcaa cacctgcacg gcagagggaa tgcttggaga gggtgggctc
      481 tggggatggc tgcatgcaga ggtcactcat ctctcagcct gggagggtaa ccctttggag
      541 ccattctacc tgcctgttca ccagcctact cacaaccctt ctcattccat tcctatttcc
      601 ttcagtttca cgtgcttgtc tcatcaggat ggcttgtgtt tcacatgcta agaaaatgca
      661 gaaataaaca cacaggagag tcacagctgg gtgtgctttg ctacctgaga aggcaggttc
      721 atgcacagaa aggtgactga ggaaggggag tt
//
LOCUS       KCLJ01002479             666 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 276883cal ultra-conserved element locus
            uce-3489, sequence.
ACCESSION   KCLJ01002479
VERSION     KCLJ01002479.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 666)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 666)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..666
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="276883cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>666
                     /note="ultra-conserved element locus uce-3489"
BASE COUNT          258 a          124 c          121 g          163 t
ORIGIN      
        1 ttattacaca aagagccaac actttcaaga atgagtgcta aagctgtaac actaaataag
       61 ctcataaaaa gcaacccttt ttactcctgc acccatttta aagtcaccaa taagcactag
      121 tcagactgca gaatgttttt accagcaagc ttctgaatat gcataatgcc aataaagtta
      181 attacatttt agtctatgtg caattaagat actggcaaca ttttaatgca aaaaaaatgt
      241 ttaaatatac taacatccta gtcttgggat atccagtcaa gctacgcaaa gagttgtgtt
      301 tgtcccttgc atactcccaa atgtggaagt aggatcagaa actggatctg gaagaaaggg
      361 taaacagcac gttagttaaa ttcacagaac tgtgttcgga gatgttgcaa acattagtga
      421 agacataaat gactcagaga aaaaataaaa aataactcca aacactcaac cacaaggata
      481 gggaataaaa cataaaatga aaggaaccta gaagagcaac agtggacagt cagctaaata
      541 tgtgcattga aagacagtct ggagttgcag aggcaccaaa cagagcaggg aaattaaagt
      601 tctttctaca gtctttgagc caataacaat agccatctct ctgcacaatt gccagggact
      661 gaaaaa
//
LOCUS       KCLJ01002480             660 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 276993cal ultra-conserved element locus
            uce-7295, sequence.
ACCESSION   KCLJ01002480
VERSION     KCLJ01002480.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 660)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 660)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..660
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="276993cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>660
                     /note="ultra-conserved element locus uce-7295"
BASE COUNT          196 a          136 c          105 g          223 t
ORIGIN      
        1 atacaaacca ccaaaaattt acaatacagt ttttcccctt ttgatgcgaa tgtttttctg
       61 tacaagtgtt ttgttatcta atactgttta aaaagctatc agcttctgca agatgggtag
      121 gcatgataat attccaggaa cacttaaata acagttttta caataaattt taggtccata
      181 tcattagatt actttatatg cactggtctc tcatctgatt ttaggcgttt tctacgtggt
      241 tgtataaaat cttcatcgga gtcctcagtt atttcaccat catcctcttc ctgctcaaat
      301 tcaggcaaag gctggaaggt cctgtctgag tagatctctg taagtttatc ttcaaagtac
      361 aatgcaactg ccttccctgc ctgtgctact tctgaatcag cctgtggatg aaagaagaca
      421 ggaatattca cctgttggaa atgcacatcc cttcaccaag tgtgcatggt ctgaaacgct
      481 taccttcaaa ttaatctctt gtgtttctgc ataaacttga acaactttca tcatctaaaa
      541 aggataccag agtctgaaat tataatcctc gcacaggatg ttatggtttg ttagctttag
      601 ttcccaaact tatttaaaac agtctttggt aaataaacct tcaacagaac acacaacttt
//
LOCUS       KCLJ01002481             461 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 277105cal ultra-conserved element locus
            uce-392, sequence.
ACCESSION   KCLJ01002481
VERSION     KCLJ01002481.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 461)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 461)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..461
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="277105cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>461
                     /note="ultra-conserved element locus uce-392"
BASE COUNT          147 a           85 c           72 g          157 t
ORIGIN      
        1 gttattttcc taaagattac atttaatatt gttggtgtac ccttcataat ttagttgatt
       61 aataatattt gatctaaacc caaattatga cttcccacat atatgacata actaatgaac
      121 tgtgaaagga aagctgttca gatggtcacc aataaccaat gcttagttaa tcctttaaat
      181 aaactggagc tcacaatgtg tccctttgaa gtcataaata atgtatattt ttcttttgac
      241 ttttaataag ccagtggagt tcatctcaca gtctccaaac acatatattt tattatgggc
      301 ctctgcagtt tactttaatt agtgtgtctg agtgctttgg gagacttagc cctactgaaa
      361 acaaacagag tcttaccatc tataaaacat tagctccctt tggtttatcc tgatacagcc
      421 gaggctcagt gagaaacaca tggtgtaagt aaacactcat a
//
LOCUS       KCLJ01002482             452 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 277213cal ultra-conserved element locus
            uce-6171, sequence.
ACCESSION   KCLJ01002482
VERSION     KCLJ01002482.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 452)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 452)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..452
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="277213cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>452
                     /note="ultra-conserved element locus uce-6171"
BASE COUNT          169 a           79 c           80 g          124 t
ORIGIN      
        1 atctaagcca tcactgattg ctgttagact caattttaga ggtttatatc ttcacaatct
       61 atcaaggagt aaagctgatc taatttgtgt gcacagcacc actgactgtg gacattcaat
      121 gaacagtgca cttgacagct ttaataaaac atagcatttg ccagcagaga taattagaat
      181 tgaagcagta aaattctagt gtttggcaac acagatgaaa caacttcatt aaaatgtaca
      241 gcttcagcga atgaaaggta ggaaagcact ggaccctgaa gaatcagcct tcttaaaaat
      301 aattgcttca gtgcttaaaa aggacagcca tgaaatacca agggcataac aaggaaatac
      361 tagtattaaa aagaaaccac agaagataaa tcaagctttt ctaataggac tgaactgtat
      421 ttaggccatt aaacttttca ttctaatttt ga
//
LOCUS       KCLJ01002483             573 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 277318cal ultra-conserved element locus
            uce-5657, sequence.
ACCESSION   KCLJ01002483
VERSION     KCLJ01002483.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 573)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 573)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..573
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="277318cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>573
                     /note="ultra-conserved element locus uce-5657"
BASE COUNT          165 a          113 c          130 g          165 t
ORIGIN      
        1 ggcacaaggc tccaagagca cgatggcaat ggcagcacag tttcaccttt atcttccatc
       61 ccagcagcaa atctgtcagc atggagcgct gctttcagct ggctcccatc cctccatcct
      121 cttcctcttc ctacagccct taaatgaaaa ctttatggct aagagctgct gacacttctt
      181 catggagaag atacatgggg tggctggtgg ctaatgagtg tcagtactcc aaaggataat
      241 ctctgcttct ctctgataca atttaacatc gtatttccct aatttgaggc tgatttagtc
      301 gctggggtat ttggatgcct cttctatggt gccgatagtt aattaaacag atgttgcaga
      361 gggaatcatt aattttagtg ctgcagatgg gagcagaatg actttgtgaa gttaatgttt
      421 cagcaaaaca ataggcttct gtcatcagtt gctataaacc gagtaaatta agagaacaag
      481 tagagtaaag gagatagctt tgaaggaata tcaattattc attttagaat tgtactttca
      541 tcacaggaag ctgggaaatg ggaaagagag gaa
//
LOCUS       KCLJ01002484             649 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 277525cal ultra-conserved element locus
            uce-4674, sequence.
ACCESSION   KCLJ01002484
VERSION     KCLJ01002484.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 649)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 649)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..649
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="277525cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>649
                     /note="ultra-conserved element locus uce-4674"
BASE COUNT          188 a          163 c          117 g          181 t
ORIGIN      
        1 cactcttctc ttgccttccc cactgaattt tggccatttt ggagcagtct gaggcagaag
       61 cctgggaggc tcaggcagcc tcacccgctc tgccccagca cctggccatc tcgcattcac
      121 aacgtgtcca gcaaagtttg tgtcaggggg tttaaacttc agatttgtgt gaccaaggaa
      181 ttcccagttc tgttgcatgt gctcccctgt ctcttgtctt tctcttggct gtgaaacagc
      241 acaaggagac tctttgtatg ctcctaatcc tgaagcaaca cagctttagc aacatccagg
      301 gataaaagca ccatcaaacc acaactttat gggggcaaat ctcctctaat ccctcgcttt
      361 agctaaacaa agcttcttgc cctaatccgc tatcgcttaa aaaaaaaaaa agctcagatt
      421 ttgtttttag taagaagatg atccaaagga ctaattttaa gagagactaa ccaactctga
      481 cagcttttaa aatagacgac aagaaaatag atgcaaactt tcctctcaat tcaagggttt
      541 tcaggctatg caataagaaa aatatccagg gtttaactgc tttcctttaa gctcactttt
      601 attgtattaa atgctctgac caactcagat tcaaatcacc aggcccaaa
//
LOCUS       KCLJ01002485             943 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 277634cal ultra-conserved element locus
            uce-1427, sequence.
ACCESSION   KCLJ01002485
VERSION     KCLJ01002485.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 943)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 943)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..943
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="277634cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>943
                     /note="ultra-conserved element locus uce-1427"
BASE COUNT          300 a          145 c          148 g          350 t
ORIGIN      
        1 aaggctttca agctattatc tcagcttaaa atttcagcgt cctatacttt tttcttcacc
       61 aaactatcca tttttaaacc acaaatattt ttccagtcct ttcagatttt atctaaaagt
      121 atattttaac agtatttaaa tagttcttaa acaataacaa tttatcttga tagatgacat
      181 gctgtgtttt ttcattttat tttaattagc tattgtggaa ccaaattccc ttttgtttta
      241 ttcctttgaa tactgtttaa ttatagttat catgccaaat atcttaaagg ttattttacc
      301 aatacagttt catttaacat aagccatgtg gaatcaatag tcctgtttcc taaagtgaat
      361 gcttggaaaa tcttacattc atatgttaag agtacacatc ctttcctcat tagctggaaa
      421 gtacagggat tttggcacag gttctgtgtg gaagcattgt gcagctttta tatggatttt
      481 gtttttagcc tttgatgaca ctgtttagaa taggaagtat ctaataagta aagcattttg
      541 tctaatgtgc tgccagtgtg tttaatatat gcctggaggt ctgaaacatt atcttctcca
      601 ctatagtaat atgcatttaa ttctctgaaa gcagaaggtc gaacttttaa aagggactca
      661 aagtacattt tcaactaaaa taatttaaac cacatgggac aggggaccag agtaatgtac
      721 ggttggtttt tatggtttaa tcatgatcat gttaatgcac accagtagct aattaaagaa
      781 aacttttatt gttcatttta aatgggttat gtaaagagta agagaattga tattatacag
      841 ccgaatgata aatgttacca ttacatttgc taacagcaag atgatattgc tattcttgac
      901 atctttaaag tattggccca tttattccat aacagagcaa aga
//
LOCUS       KCLJ01002486             758 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 277747cal ultra-conserved element locus
            uce-3462, sequence.
ACCESSION   KCLJ01002486
VERSION     KCLJ01002486.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 758)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 758)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..758
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="277747cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>758
                     /note="ultra-conserved element locus uce-3462"
BASE COUNT          230 a          163 c          115 g          250 t
ORIGIN      
        1 cagcaggttt gatttctttg tcagtgccac acacaacccg acccactttc ctaagagctc
       61 ttgcatccca acgctgccga ggctcctttg taaacgaacg acacgcattt aaaatacctt
      121 tgtaataata aataccacat gaacatatgt atcaagcaaa ggatttcaat tttgatgaca
      181 cttgcttctc aagaacagac attctggaag aaaaaaacgt tgccagcccc aaattgattg
      241 acatttgttt acttaactct ctcttcttgt aagtctgcac acctatttca accttgaaca
      301 gtttccaact gtggtatact ggaacatttt ttcatttatt aagttcagtg ttgccaaccc
      361 aaacaaagag taatcagtga tgatccaagc agaccaagct gtctagcacc atacaatgta
      421 tctgcatgct aattttcaaa ttccctcaca tttccagaga actaatggga tcattttcat
      481 tctgttacag caactcaaca gttactgaat caccatctgt gttttcgtta acctgaatca
      541 gatataaatt ctgttattgc aaggtagagc agcttgttta atgattctta atcttttctt
      601 taattaaatc atgcagccaa cctgaaaaat ctatcttaat gcaaattagg agcttttttg
      661 gcattcgctt acagtaatgc actaataagg ttaatttatg aaggttctct tccagtctgt
      721 acagatgata tttgttcgct gcatattttt agcatatt
//
LOCUS       KCLJ01002487             681 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 277858cal ultra-conserved element locus
            uce-131, sequence.
ACCESSION   KCLJ01002487
VERSION     KCLJ01002487.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 681)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 681)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..681
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="277858cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>681
                     /note="ultra-conserved element locus uce-131"
BASE COUNT          229 a          117 c          150 g          185 t
ORIGIN      
        1 aaaaaaatgg gggcggagag agttctaata attcaggtat gattaaaaag aggatattta
       61 ctggcttgta ggccttgggg agaaaaaaca acacggcagc atggtttcta tatacatccc
      121 tagggaaaag ttcaagaaat aagaaaatgc atataaccat tgttcgtgtg cattatgcaa
      181 gctttaaaaa aaatagatag ggctgagttt cagagtatca ggaaaagtat ttgggctgca
      241 tttaagtgag aaggattagc ttgcatgatg ttgatttata aatggcaaca accaatccct
      301 tatattctct cctgcagcca tctctcctgc acagtaattc ccaatgttcc cttttgaaag
      361 cccttgatac tcagttagcc ccgaggtata atgtttgata atataactac tgcttctgtc
      421 actgcgtttt gtacaaacgc attatatgtg gcccagaatg gtaaagattt atgtatgggt
      481 atggaaaata aaaatcagca ttgattaaaa gccccagata gaccatccaa tcccgcccag
      541 agaacatcag ttattttgca ttttgacgtg gcgattgata actcataaat gcaagcagga
      601 atgacaaatg cggatggaaa ctggctttga caaaaacgat aacagtatca gtctcgaggg
      661 gcgatggagg tataagcagg a
//
LOCUS       KCLJ01002488             665 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 277969cal ultra-conserved element locus
            uce-726, sequence.
ACCESSION   KCLJ01002488
VERSION     KCLJ01002488.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 665)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 665)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..665
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="277969cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>665
                     /note="ultra-conserved element locus uce-726"
BASE COUNT          183 a          165 c          147 g          170 t
ORIGIN      
        1 tttttgaaat atcagtggct ttgcgttaat caatactgat gagtttgtcc ttgacacagt
       61 gaccgtgtca tcgggctatt gtcatgtgat atcatgtcat ttccccacct ggctcatgac
      121 cttgtccttt aaatgaccca aagcttaagt agcaggaggc ccctccccgc tgcctcagca
      181 aggtcgaacg ggtcagcgtg tcctcatcta taatccacca ccatttgtca gcagggaggc
      241 tggaggaggc aggctcgcta caaggggaga atgcccaatt aggcagctgt cacacaaagc
      301 ataggctgca aaattatccc ctgtcaaaag aaagagcagc tgcgggtgcc aattacagca
      361 acctttcaac cctttaggta ctggaaacta cacagaagta aatgaagtac aattagtgat
      421 aacaaatcga tgaattagga cagtaaatta gaaattacta gcaggtgagc ttaggtctcc
      481 cataatatta agggcacagc acaccccagg caagggcagg aatatacaga tttccacatc
      541 agttttgtct tatccgtgcc ttccttgtcc ctctgtcctc ttcttctcat aagcctcgcc
      601 tgagccagat ggtgcaggga aaggagaagt tgtagcaccc tatcttccct ctttatcctg
      661 gcaaa
//
LOCUS       KCLJ01002489             414 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 278081cal ultra-conserved element locus
            uce-4442, sequence.
ACCESSION   KCLJ01002489
VERSION     KCLJ01002489.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 414)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 414)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..414
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="278081cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>414
                     /note="ultra-conserved element locus uce-4442"
BASE COUNT          146 a           83 c           86 g           99 t
ORIGIN      
        1 gggaaaaaaa ccacttagca aaccacaaat ttcagagacc tagtcacatc tgtgttttat
       61 cagctttttc cggatagtat tacaccaaac aattgtctgc agatcggtag acagctgaga
      121 ctttaaagtg ctgaattact gagaaaatgc tagagataaa aaacagcaca tgtatcctat
      181 cagtgtaatg aaaccaacct gctgctagcg ccatcgtgcc ttagttctaa gtaccctgta
      241 gaggaacgga aggctttcat ttaactctta agaggaaagc aagggaaaga agagtaaagg
      301 tcatctaata cccgccttaa tcacaaaact gcaatgctct cagatatatg aagggaggaa
      361 tgcttggtgt tcaaaataaa acatcaactg cagacaacag gagtgggcct gatc
//
LOCUS       KCLJ01002490             402 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 278186cal ultra-conserved element locus
            uce-4547, sequence.
ACCESSION   KCLJ01002490
VERSION     KCLJ01002490.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 402)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 402)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..402
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="278186cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>402
                     /note="ultra-conserved element locus uce-4547"
BASE COUNT          104 a           77 c           84 g          137 t
ORIGIN      
        1 taattgtttt gatgcaccaa aattaatatg caattatgtc tgtctctcag gtatgggagc
       61 ctacatctcc catctgctcc cggctctggg tgtttggtgc acatgtagca cggggcctct
      121 gaatgtataa tataacccca agtgaggctc agtggcagct gggataacat caattggtca
      181 tgctttgctg acattcattt taacttgaac tctagccgtc atggagatta ttaaatttat
      241 aatgatatat gtaagatcca ttttaatgac tctgcatgct tgggtgatct ctctcacttc
      301 tgtttgcaaa acagagtatt gcatttcatt tcctatagaa tttgaaaggt taccgatgag
      361 agctttgctt agacttctgc ttactgggaa aaatcagttt gg
//
LOCUS       KCLJ01002491             713 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 278287cal ultra-conserved element locus
            uce-4853, sequence.
ACCESSION   KCLJ01002491
VERSION     KCLJ01002491.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 713)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 713)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..713
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="278287cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>713
                     /note="ultra-conserved element locus uce-4853"
BASE COUNT          234 a          142 c          135 g          202 t
ORIGIN      
        1 tagtaactcc tgtcaattaa ggagagtgta gtctactctc aattcattaa atccaccaca
       61 attgtcagct agtgacaggc tctggggagg ccaggactaa gtaaacataa gggataaatt
      121 atgcaagaag ggcacagtta aaatgaggcc ccctttacct aacatgttta tcaaattctt
      181 aagtaagcca ctatcattga caaaagtcca aacccctata ttcttagagg gaaaaaagca
      241 gtcgctctcc tttgacggtt tgaaaagatg tttgtaccac tcactgactg gctaatgaat
      301 aatcagattt cacagcttga gtgctggggt ggtaatttgg ttgcacgcca tgctccaaat
      361 ccatggaata gtgcttcatt aatgtgaaga cctgtataat caaacaatta gcagtctctc
      421 tgctgctaaa gcagcttttc atcagcatat atacttcgtt gtaagatgag actcaaatta
      481 ctggatctga cagcaactag tcttttacta aatcacagca gtagtaaagt agggtggaca
      541 gaacaaaccc atttctacat atgcaagagg ttcattctat ctatgccaca tgccatatat
      601 aactatcatc aaaaaggtca tgacattgta ggtgaacaga aattgcactt aaatgagtaa
      661 atcacagatt caagtgccat aaattggcag tgatatgttg ctacttctca ctt
//
LOCUS       KCLJ01002492             875 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 278492cal ultra-conserved element locus
            uce-3535, sequence.
ACCESSION   KCLJ01002492
VERSION     KCLJ01002492.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 875)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 875)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..875
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="278492cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>875
                     /note="ultra-conserved element locus uce-3535"
BASE COUNT          299 a          156 c          193 g          227 t
ORIGIN      
        1 taagaaatct agcagcaaat ttaaaagatt gtcataaacc tgtggtaatc tggctgttct
       61 tgcctggtac ctcacctgcc tgctccagag caagagcacg gtactttcta tcttcaaact
      121 gacatgaccc atcagagtga caggggagag aaagggctgt tatttgttcc ccagctggtg
      181 acagtaattt tgttcatgaa ctaggtactt cactgccaaa caatctggaa aagcatgata
      241 atgcctgact cactgtgcct tatagagaaa ggccaacatg cattcgcatt ttctgaaatt
      301 ctatcttgtt ctgattttac aagaaattaa aacatttcaa atggtggaaa ttatagaaaa
      361 taaccgttgt tgttttgcac agcataccat tcacagctag cgtgaaagac cttccgtttc
      421 aagcctttgc cctttacctt gatgtggcca atgctttcta gtggaggttt tggaaggaga
      481 agaaatatca cagcatttct ttctttgttg agaatgaaga agtgatgagg aaggaggagt
      541 ggaaagaagt gaggaaaggg gaggagaaaa gataaaagat aacaggtgtg agacatgaga
      601 cacgaaccgc agagattgaa gggtattaac agatgagcac agaaaacgga atttcgaatt
      661 tcattatgca attgctgctc atgctacagg ttaaagagag tgatgatgtg caatgaagca
      721 acagctctga aatacggcat catacttacc aactaagcat tacaagaaaa aaaggaaggg
      781 agagagaaag aaaagaattc tataacatta tccagatcca acaaccttat taatagcaac
      841 tgagatacat cctaaacact gtctgaaatg cttgc
//
LOCUS       KCLJ01002493             828 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 278717cal ultra-conserved element locus
            uce-1309, sequence.
ACCESSION   KCLJ01002493
VERSION     KCLJ01002493.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 828)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 828)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..828
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="278717cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>828
                     /note="ultra-conserved element locus uce-1309"
BASE COUNT          252 a          220 c          155 g          201 t
ORIGIN      
        1 cttcgtattt tacacctcaa cttcctggaa cagtgcaagg agggtacctc cccccagtct
       61 gtggcatgga gagcctcttt ccctacggac cagcagtgcc tcagacaatt gctggcttgt
      121 cacctggcgc actgttgcag cagtaccaac agtatcagca gaacctccag gattccttac
      181 aaaagcaaca gaaacagcag caagaacagc agcagaaaca agttcaagca aagtcatcta
      241 aagcagagaa tgaccaacag caaaactcca gtgacacttc ggaaacgaaa gaagacagaa
      301 gttctgctac ggaaagcaca aaagaagaac cccagttaga ttcaaaaagt gcagactttt
      361 cagacactta cattgttcca ttcgtcaagt atgagtttat atgcagaaag tgccagatga
      421 tgtttactga tgaagatgca gcagtaaatc atcaaaagtc cttctgttac ttcggtcagc
      481 ctttgattga cccacaagag acagtgcttc gtgtcccagt cagcaaatat cagtgtcttg
      541 cctgtgatgt ggctatcagt ggaaatgaag cacttagcca acacctccag tcaagcttgc
      601 acaaagagaa aacaatcaaa caagcaatga gaaatgccaa agagcatgtt agattattac
      661 ctcactcagt ctgctcccct aatcctaaca ccacatctac ctcgcagtct gcagcttctt
      721 ctaataacac ctatcctcat ctttcttgct tctccatgaa gtcctggcct aatattcttt
      781 tccaagcgtc tgccaggaaa gctgcttctt ccccttcttc tcctcctt
//
LOCUS       KCLJ01002494             441 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 278829cal ultra-conserved element locus
            uce-2666, sequence.
ACCESSION   KCLJ01002494
VERSION     KCLJ01002494.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 441)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 441)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..441
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="278829cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>441
                     /note="ultra-conserved element locus uce-2666"
BASE COUNT          114 a           82 c          117 g          128 t
ORIGIN      
        1 agccttgtcc tcaaggctgg ggtgacctgg gaagcagata gagctactgc ttggaaattg
       61 cttttctgac agtatgttca tcatattttg agcttcctag atgaagtgac attgcttatc
      121 tcctcgaagg gaaaagcatt aaacctgttt cttctttgct cttcaggaga aaagctgccc
      181 ttacattcct ccgaagaagc tcaaaatctg atgggccagt catcaggtaa aacactagag
      241 ggaagtaagc aggctttggt tgaaattccg taaataggac tgtgccgttg ttgtgctccg
      301 agaggaatca tggtattcat ggagagacag cagattatct tggtgtgcag gaagaggttt
      361 tctcctggtg cagcggaaaa gtgcctgtct gtgatgtttg tgtgcaattg ccatagaact
      421 gcagagtatc ttgagttgga a
//
LOCUS       KCLJ01002495             572 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 278925cal ultra-conserved element locus
            uce-5693, sequence.
ACCESSION   KCLJ01002495
VERSION     KCLJ01002495.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 572)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 572)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..572
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="278925cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>572
                     /note="ultra-conserved element locus uce-5693"
BASE COUNT          183 a          107 c          140 g          142 t
ORIGIN      
        1 gctggagaat tcccagaaga gcttgataat ctgacagctt tccggagttt tacatgggaa
       61 aaatgacata cctgtgtgca gcagggagga gtgcccgcgt cgtctgcact gctaaaaccc
      121 aggtttctgt tggacatgag gtcttcttcc ctctgcaaat taatggggac caatggctga
      181 tccagcactg tgagcataaa tcatgtaaag gaagagcgag aaatgagtac aaggcttttc
      241 tttctattta gtaatttatc aagggaagtg gcacattaat aaacagatct cccttgagat
      301 gtgggagtaa cggagataaa tatgactgtc aaatctggcc tgtttccttc tgttagagaa
      361 ggaggagact gtgggaatgc aaatgcagga aacaatatct atatctggaa atacgcatat
      421 tatttgtagg acagaaatcc tgacaactca tctgagatga ggccccatcg cacttggtgc
      481 agtatgtaca gaataaaata caagccctgt ctaaaggagc tcatctaaat agatgacact
      541 gggaaatagg gacacagaaa gaagcagcaa ct
//
LOCUS       KCLJ01002496             525 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 279035cal ultra-conserved element locus
            uce-5671, sequence.
ACCESSION   KCLJ01002496
VERSION     KCLJ01002496.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 525)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 525)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..525
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="279035cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>525
                     /note="ultra-conserved element locus uce-5671"
BASE COUNT          162 a           88 c          108 g          167 t
ORIGIN      
        1 ttccctttct acctaatttt acgcagggct gatataaccc agcagtcaga gattgtagct
       61 gttttgtttg cagttaattc agctcttatt cgacattttg ccagtgatgt gatcataaat
      121 tttggttcca ggaactaagt gaggtgcagg taccaagaag atgttatgat gccagtgtgt
      181 gaggaagagt taaatctttt tgacaattca atggttccct ttgggtttgc acaaatggca
      241 cctgttgttg aagtcaatag agcttacaat ttaatttcat ctgcctgcaa acaatctcac
      301 tcattagggg gtgaaatgat gatagaattc actgaggcat gcagtttcac tttctacagg
      361 gcactacgta agtacagtca tcattttcag tgaagggagg cacaattatc ttggaaactg
      421 attgtaaagt agaagaaagg gaaaaacatc ataaaaattc agtctcacta catgttgatg
      481 ccaatttgca atctaattat aatatttaac atgacatgga aatat
//
LOCUS       KCLJ01002497             460 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 279145cal ultra-conserved element locus
            uce-4402, sequence.
ACCESSION   KCLJ01002497
VERSION     KCLJ01002497.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 460)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 460)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..460
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="279145cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>460
                     /note="ultra-conserved element locus uce-4402"
BASE COUNT          161 a           83 c           74 g          142 t
ORIGIN      
        1 ttactttccc tgcacaaaat atcacccaga agagtttatc tatttttgag cataacaaga
       61 agttcacctt ttcagagtgt gctgcacgaa gctttgcctg ccttttatat agtaaagtaa
      121 ttttatggta ttgtgtcaca atgaaggaca aagccaactg tttagattcc tgttgtggct
      181 ttgatcacta acaatgctgc atgagcagcc aacagaaggc tgacatttca taaaatatgc
      241 agtgataaaa actaatactg tagcatctgg gagcgatata taaaatgcag aaatacacct
      301 aataactgtg atcttaaatt acaagttact aaaagctaaa taagcagcat acctaaaaga
      361 aagattaaga caggattttt gtgcttctgc tcctaaaaac aaaaaattaa tccaagatat
      421 gctatctatt attcttaaca atttctctgg ttcccttgta
//
LOCUS       KCLJ01002498             344 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 279251cal ultra-conserved element locus
            uce-7907, sequence.
ACCESSION   KCLJ01002498
VERSION     KCLJ01002498.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 344)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 344)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..344
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="279251cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>344
                     /note="ultra-conserved element locus uce-7907"
BASE COUNT           89 a           74 c           72 g          109 t
ORIGIN      
        1 tttctttttt ttttgcagtc ttagcataaa atggtcaaat gatgttccac cgcagaattc
       61 aatttcacag ttcagttggg tccttgatta cactgccaaa ttcagattaa tgtgcattta
      121 actaacatgg atcagggact cctggccggc agccagcagt aatagtagca accgtgagct
      181 gagagtgtgc tgctctgtcc atccctgtgc actgccactg aaattgattg attaaatgaa
      241 ctcattgcca taattatttg taattgtgct acatgatgag cctgtgtcaa accgccctga
      301 gatgctccac acatcgttag tgtgaagatg ttcttttcca gagg
//
LOCUS       KCLJ01002499             664 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 279354cal ultra-conserved element locus
            uce-1863, sequence.
ACCESSION   KCLJ01002499
VERSION     KCLJ01002499.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 664)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 664)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..664
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="279354cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>664
                     /note="ultra-conserved element locus uce-1863"
BASE COUNT          207 a          157 c          122 g          178 t
ORIGIN      
        1 ctgtgctttc ttgctcctag gaaaacccag cctaaattga tgattccctg gagtcacagt
       61 tatatcacac tatttctgtt tctgctcaaa aggttcaggg cttctacaca gaaatggaac
      121 acaacactac cttcggggat tttaataaat gtagggaaca ctgctagcaa aagagttgct
      181 gtccaaatag actgacatac ccaggccaat gcagcctcta atgacagagt aagataatgt
      241 caggccccac tcaaaatcag caggaagagg aagatcaatc ttggcagagt gaaggaaaaa
      301 tgctggcttt cttcatgtta gctcatctca tacatatcta tcttcagctg ctgcccagta
      361 ctgtggtgct ctgcattaac tacacagtgg atcaataaca attacacctt ctcaaaaaca
      421 tgacacatag caggattggg ttgacatttc acttaggcca acattgatct ctgattccag
      481 tcctaaattc aagtcaggcc tgagtctagc tggaataaac acacagttaa aaacaaaaaa
      541 ggaaaccagc tgcttgtgcc ttggctcaga agtaaacagc acatccatct gtgcatcccc
      601 catctccaat ccactattct tcctgttgct actagtgatt ctaaagttga tcaaagacta
      661 tttt
//
LOCUS       KCLJ01002500             399 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 279466cal ultra-conserved element locus
            uce-2505, sequence.
ACCESSION   KCLJ01002500
VERSION     KCLJ01002500.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 399)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 399)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..399
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="279466cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>399
                     /note="ultra-conserved element locus uce-2505"
BASE COUNT          157 a           56 c           82 g          104 t
ORIGIN      
        1 acctgtagaa atctcaggaa acgtttgaaa tttcttcaac tggctgtata tcaagcatac
       61 agtgaaaaaa ggaaatagaa ggaaagtaga aaagaagggc aaaaggcgaa gtggtttgtg
      121 tccatttaag aaaaaatcaa taatagcata aaattgattt agtgcttgtc ataaaacata
      181 agtaagtgct ggaaaataga gaaaattgag tctcaattta atctgcacaa aagccacact
      241 gtactgatga agtgatctga ggagagagct acataaaacc taaagacaga tacttaattg
      301 tcatattaaa gactctcttt tctgcctgct ggagtcaagg ggtaggaccc attaatcatg
      361 tggataaggg gtattgaaat caaatctcaa ttaaaatct
//
LOCUS       KCLJ01002501             387 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 279570cal ultra-conserved element locus
            uce-2897, sequence.
ACCESSION   KCLJ01002501
VERSION     KCLJ01002501.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 387)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 387)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..387
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="279570cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>387
                     /note="ultra-conserved element locus uce-2897"
BASE COUNT          141 a           66 c           65 g          115 t
ORIGIN      
        1 acaaagaatc ctaatcacag ccaaagatat ccttctttaa ataggttatc actaacaagt
       61 cacagctgga gttactgcaa gcactgagtg aagactgtgg ggctaataaa aagaaatgat
      121 tcacgcctca tttatgttca cttatgtttt acattaatag aaaccaataa taggaaccag
      181 ttaccataaa agtcatggac cgtaaataac acaaatggca aataagtatc atctagtact
      241 tttcacagct ggacaggagg attgctatat ttaaaagtag ttaatggatt tttattggaa
      301 ctttactttt taaaggcaca gcaccaagat tttgagatct ttttaaaggt cccagtaagc
      361 aaatgagcat aatatttaca cttcttg
//
LOCUS       KCLJ01002502             702 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 279669cal ultra-conserved element locus
            uce-7511, sequence.
ACCESSION   KCLJ01002502
VERSION     KCLJ01002502.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 702)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 702)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..702
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="279669cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>702
                     /note="ultra-conserved element locus uce-7511"
BASE COUNT          240 a          156 c          141 g          165 t
ORIGIN      
        1 agcacaagct gaaaacttca gaattatttc agaattactg gtgcctgatg tcactctctg
       61 aaattctcta gagctggaga cactggagac tcgtggtaag aaacacaagg caggagcaca
      121 gccacggatg cctcctcttc cgcacaaatt tttctggcca agaggcaaca ggaataaacc
      181 agaaacactt cagaacaaaa agctgccact ccttataaac taacctcaca ttctgggcaa
      241 aaccaatccc cctctggttc ggctgtcagt ttcagacact tagcatgata aacccgaggg
      301 cagagttcac agcagaggac ttggccttcc cgatgacaaa cccagcaata gaaatcattc
      361 cgtccatcct gtggtacaac atcaacaggg tctgtggtga gtggctgctt catatagtaa
      421 aacggaccat gtcttagttc tgactgaaat gtaggcaaga aaaacaggtt tggtttcaaa
      481 acaaatttgc aatatataag caaacagcaa tttacagagt ttgattaaca tttaagcaca
      541 gtatcttagt cattgcacat tcataaagaa gtttactgct tattcagatg ctgaatgaca
      601 atttgcactg aagaccagaa ataaatgtgg caaatgaggg cattgagtga aagacatgca
      661 atccaacaag agccagcaaa cactttcagc ttcaagaaag aa
//
LOCUS       KCLJ01002503             603 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 279772cal ultra-conserved element locus
            uce-242, sequence.
ACCESSION   KCLJ01002503
VERSION     KCLJ01002503.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 603)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 603)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..603
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="279772cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>603
                     /note="ultra-conserved element locus uce-242"
BASE COUNT          194 a           92 c          107 g          210 t
ORIGIN      
        1 taaaatgcta ttgtttcatc tgaggtgtga ggagatgtgc taaccttgtc aatgtgggtg
       61 cagtagagca gaaatgataa ctgtatatac tataaatata cagagagaga caacttattt
      121 aaatcctgaa tacagtcaga cctcatatgc attgttaaaa aaaagcccta aagaattgca
      181 tatggattag ggggatgaat attctattat ttcagtctgt tctgctgatc ttcttattgt
      241 gactttgtgc ttcagaaatc tgccaggaat ttggctttgc tgtactagac agtaatttta
      301 aatgtgtatc aagcacttga tagtgtatga tttgcgtgct gttgcattcc cattccctaa
      361 attttccacc aatttattac ttttttcata ctgttttaat atttcaggat gatgaatata
      421 tacagcatca ttaaaagtaa ataaaaaatg catgaaatta aaaaatggaa tattagatgt
      481 ttctttgctg taatccctag gtccaatagg aatgaaatgt ctctgttctg tcaagtaatc
      541 cctaaacatg attagggacc ttgtagtttc cacatagccc acataatatt tgtatcatat
      601 aag
//
LOCUS       KCLJ01002504             576 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 279873cal ultra-conserved element locus
            uce-6438, sequence.
ACCESSION   KCLJ01002504
VERSION     KCLJ01002504.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 576)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 576)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..576
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="279873cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>576
                     /note="ultra-conserved element locus uce-6438"
BASE COUNT          136 a          129 c          158 g          153 t
ORIGIN      
        1 aaaccttcac tgcaaatgac agtgggaaat ctgaagctcc agccatgtgc aggataatgt
       61 gagtgatgat tcccattcca gcaccattgc ttttcctaca catcacctga aagaatttta
      121 tgtgcccaaa ggctgaaagg ttggcaaggg cggctggcta agtctgcaca aggtcagtga
      181 ggatgtccaa taattgtcct aacactttac ctgttatgga gcaataatga gatttttttc
      241 attattttcg ggtgagtgag cctggcagat gctgacagcc agcagatgtg taaagttcga
      301 ggtgatttgt aagggaccgg ctcatctgac gcatggtaat tgcactgggg gacattgtca
      361 ctcagccccg tgtcctgctc ctgcagaacg aggtaaaggt cagttcacag agctgctcag
      421 gcccaggggc agctcagggc tgcaattaaa cccctcacat ccacttctgg gtgggtgccc
      481 caggtgtaga tttggggatt ttggatctgg agtgggcttc ctgctctggt aatgtggtag
      541 ctcagtgctc acctgtccac ttttagaggc ttggga
//
LOCUS       KCLJ01002505             410 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 279979cal ultra-conserved element locus
            uce-12, sequence.
ACCESSION   KCLJ01002505
VERSION     KCLJ01002505.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 410)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 410)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..410
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="279979cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>410
                     /note="ultra-conserved element locus uce-12"
BASE COUNT          127 a           81 c           77 g          125 t
ORIGIN      
        1 ttctttggga aatggaggga aacacaacag tcatatgtat caaattattt agaatcgtgg
       61 ttcttttcac atacgataga ggctgtcata aaggcaggag gctgctgtgc agcaagaaaa
      121 gcacattagc tattaacctt cccccagccg atcaactttg ttttgcaatc tttcctcaga
      181 accattagaa taccctgaag aaataacttt ccaattaaaa aggatctcag agaacaaagc
      241 cattttatct ctgactcctg gtgttcttta ttccaataat ttaaattgga attgattttt
      301 caatttagcc gttgacttgc tatggacaca cagctgaaaa ggccgaatgg aattgcatgg
      361 ctgaaatatt tgtctttgtg atgcactcct cataaattca caggagcctg
//
LOCUS       KCLJ01002506             783 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 280082cal ultra-conserved element locus
            uce-5476, sequence.
ACCESSION   KCLJ01002506
VERSION     KCLJ01002506.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 783)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 783)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..783
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="280082cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>783
                     /note="ultra-conserved element locus uce-5476"
BASE COUNT          297 a          129 c          157 g          200 t
ORIGIN      
        1 tttccctccc tcactcatct tagattagtt gtactctctg gtagacagat atggtattac
       61 tgcttaccaa taaattggaa aagcggaaag atttctcaaa ttttctcttt tatgataata
      121 aacattggca cagcactaac ttctaacagt tccagaatga attgtaaaat agcatggaaa
      181 actcaaaata ttaattctta atctcttccc ctctcccacc atccccaaag tatttttact
      241 ttgaaaaatt taatggttta gcagaatttg aaagcagaag gtttaaaaaa gtgataaagg
      301 gggtgcagaa attagcagag gtggcactac ctgaaagctc atcagaaagg ggagtgagaa
      361 caatatcagg caagaagggt ttggaagtat ggatcagaac aggagcactt ttagcactgc
      421 gtatataggc cgatggcaga gcacattcac caatggatcg gcttctcatg gctttaaaaa
      481 ggaaaagaaa gaagtgggga aggaaaaaag aagagtgact ataatgaaag gcttgtgtca
      541 cagaaaaagc agcaacagag aaaacaaaga taaaaaggaa gaaagttcaa aaattaaaac
      601 atttcagcac ggcagataga gctgtaagaa agaaatcagt ggacacataa gacattctga
      661 gttttcaact tttatgtaaa gcagcaacaa tgcctttatt atgacgatta cagagatttt
      721 gcatttgaaa tcaagaagct aattaacaca ttttcccact gcatcagggg ttgaaaaatc
      781 aaa
//
LOCUS       KCLJ01002507             469 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 280195cal ultra-conserved element locus
            uce-1231, sequence.
ACCESSION   KCLJ01002507
VERSION     KCLJ01002507.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 469)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 469)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..469
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="280195cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>469
                     /note="ultra-conserved element locus uce-1231"
BASE COUNT          125 a           87 c          122 g          135 t
ORIGIN      
        1 gggggatgga agcctgtctg gtttgaggcg ccctggagct aaatctttca atcaccagag
       61 aaaactgtca tttattaaat atttaacaga taggatggtg tttggactcc agtaatttct
      121 attcaatctc ttcctttggt agagccgttc caataaagaa gatccagagc aactgcggtt
      181 aaagcagaaa gcgaaagagg taggagtttc cagttaccat gcttgccttt gtgtgttgag
      241 agaaggttgg cagccctgtc ctggcaatta ggtcagggtt tattttgctg ctgcatacca
      301 tttgcagagg ccttggggaa ggacaggaac tgccacaggc aagggcagtg cttcaaatga
      361 ggtcaatgaa ttatgagctc tcttttttta acacagtttc agtcctgtct cgaaacagtc
      421 ctttgtaagc tgcagcagta cacttggtag gaatataatg tgggattag
//
LOCUS       KCLJ01002508             677 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 280302cal ultra-conserved element locus
            uce-3323, sequence.
ACCESSION   KCLJ01002508
VERSION     KCLJ01002508.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 677)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 677)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..677
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="280302cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>677
                     /note="ultra-conserved element locus uce-3323"
BASE COUNT          190 a          155 c          121 g          211 t
ORIGIN      
        1 tcacgctttc taactaccat aatccacgct atctgggaaa tacttgaatc tctctaggtg
       61 taggctgtag tcctgaagca tttaccttcc agacactttt ctaaattttt tttctcgacg
      121 tctttttctt ctctcggtaa aacggctctt ggatttattt ctcacgcatc tctatcgcgc
      181 ctttgcctct gaaaagccac cactgggtaa ctgagacctg ctataccaaa ccactgctac
      241 tggagggact tccttgaact tgaagagagg cacatcaaaa accaccagtg ttactgccat
      301 gtcaattttg atgctaataa tgtgcagatt atgacgaaaa ttgccaatca tgttctctga
      361 tggacctcct ttgaatgtgg aattggaaaa aagttccccg cacagagacc tgctgtcaag
      421 tactaacaac ccgctaaggg aagtcattag aagagacaga taagagactt ggtacataaa
      481 acattgttct tggtgcatag aatgtatgtt atttaatgtt atctctctta cctgaagtga
      541 tttcgcacaa gaaagccact ttcttatcat ctcaattgcc aattttcatt ttggtaactt
      601 ggacaccccg ggtagacttt tctctgttaa gttgatattc caccaatgtg aagagcctca
      661 ttaaatcaaa cccagat
//
LOCUS       KCLJ01002509             488 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 280413cal ultra-conserved element locus
            uce-2396, sequence.
ACCESSION   KCLJ01002509
VERSION     KCLJ01002509.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 488)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 488)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..488
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="280413cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>488
                     /note="ultra-conserved element locus uce-2396"
BASE COUNT          136 a           98 c           65 g          189 t
ORIGIN      
        1 ttttctccag agtgaaattc atacagtgtt ttgtgtttgc tataaataca catctcagct
       61 gtatttctat cctttgtgtc aacattaaaa ttcccttgtt ctatgtttag cttgaataat
      121 taccaaacca tttgcaatta gaactctagg atatgacctc acagtgattt attccttcat
      181 ttctttctgt atttaatgca tttcagatac tgaaaatacc aaatctttgt ccttttattt
      241 tgatgtttat cagtaatgga aacattccaa aacaatcagc caaataccta tgctttgttc
      301 atttattgcc ttctctgaag ataaattgac tgtactcaac tctcttcagc atttttcttc
      361 acctagatat tattgccttg tgcagccacc ccaaggtgac tgttatcact taattaaatc
      421 cttgcacgct gggaagaaaa aacaacattg ttcgttcata accccaagga ggtgtgtttt
      481 tttttttt
//
LOCUS       KCLJ01002510             818 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 280520cal ultra-conserved element locus
            uce-3193, sequence.
ACCESSION   KCLJ01002510
VERSION     KCLJ01002510.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 818)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 818)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..818
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="280520cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>818
                     /note="ultra-conserved element locus uce-3193"
BASE COUNT          256 a          164 c          125 g          273 t
ORIGIN      
        1 atatagtgct ttaacattaa attcttctat tcttcagggc atgaactgtc cttccttatt
       61 tgtgcactgt gtaagcagca cctacgtgat cctgaccggg gtctcaacca actgtgcaaa
      121 tattagtact tgtaatatta taataggagg ccattatggt taatattgtg tcatgccaag
      181 atatcccagg gggacacatc aaagatgaat gtgcacaggt aaattgtctt gtccttttct
      241 agaatctaaa agagaagacc acttcttgtc actcctaata tgaaagtaca ggcttagcct
      301 caaacatgta tttaaatcag aaacatacag tactatgaaa tgaaccatca ggccatccat
      361 gaatttgttt taacaatcca acaacatcac catttctcat tcatccactt agcttaattt
      421 tcctaccatc actttcattg ctgaggttgt ctctattaag ccattttttg tgcatcatta
      481 acttttaacc aggcatcgat agctttattg tttaaattgc gtatgacttt atttaacgtc
      541 agcatttctt ctggctcctg acatgaagtc acattttata actaattaaa ttgatccctg
      601 ggaagcagaa gccactaaac ggaattattc gtacccaagt gtcaatatat taaatcaaag
      661 ggctaatgag ttgggtcact gcttctttta tctgaaagct gctgcagaat agaattcata
      721 ccaacctcta ccttctgctt taacaatcaa ttttatttaa accaaaggta actaattaat
      781 aaattttgat atagctgtaa ataatacatt taagcctg
//
LOCUS       KCLJ01002511             836 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 280632cal ultra-conserved element locus
            uce-4207, sequence.
ACCESSION   KCLJ01002511
VERSION     KCLJ01002511.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 836)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 836)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..836
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="280632cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>836
                     /note="ultra-conserved element locus uce-4207"
BASE COUNT          213 a          188 c          223 g          212 t
ORIGIN      
        1 tcagacagct gcagagctgt gtgcagtgca ggactgtgtg gattgctacc atcattaacc
       61 cattaatgtt gcaggtattc tctgttgagt gcttctggaa attgtgctga aatgggagca
      121 ccccagttta ctttctgaca tctgtcgtat gctgcctcat cttaaactgc caaacatcaa
      181 tatcttctgc ggatcttaga ctgttacaca gctctataaa agtttagaga agaatgtgct
      241 gctgtgtaga tttcagactc ttaagcacgt tatgaataat actgtcttta tttctacagt
      301 gggagccaag aagaaaggtt tgctcccggg tggaacaggg aatatcctcc ttcccttgat
      361 agtcttggtc aagaaagaca ctctggcaac ttctctggca gaaaatcact tccttttgat
      421 atccaggcac tctcaggcct cctcaatcct cagtttgcca acagagagga accttctttc
      481 agctatggag ctagagatgg accacgtagt gacttcagag gtggggatgg gcaccacgat
      541 ttcaggggca gggatttccc accatctgac ttccagggca gagatgagtc tcagatggat
      601 ttcagaggta gggagccgcc tccttccgag tacaggggca gggatatgta ccctggagac
      661 ttccgggaga gagaagggcc ccccatggac ttcagggctg gggatgttcc ctcaggggac
      721 tacaggaaca gggacacgtt ccgtatgaac tacagggaca gggaagcaca caatatggat
      781 tacaggggca gggaggaacc tccatcagac ttcaggggaa gggggtctta tgattt
//
LOCUS       KCLJ01002512             586 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 280744cal ultra-conserved element locus
            uce-4711, sequence.
ACCESSION   KCLJ01002512
VERSION     KCLJ01002512.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 586)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 586)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..586
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="280744cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>586
                     /note="ultra-conserved element locus uce-4711"
BASE COUNT          186 a          108 c          131 g          161 t
ORIGIN      
        1 tgataacaat tacaggtaat ttttcatttc aattggaaga acaggtataa aaaaggagag
       61 caagagaaac agagagcgag tgagatttcc caagtgcctt attccctccc aggtctacaa
      121 cctaacagga gtgtagagag ctcggtagtt tcttcttatt ccattaagtg agatctaatt
      181 gtgtctcttc tgtctgttgg cagatgcggt ttctacataa caacagccca gagacagagc
      241 tgcctgatta atgcctccag ctgtcatatg ccccattatc tgtgcatttg cataacttaa
      301 tggtttagga caggggagag aggatgctta atttaatgtt tagcaggccc ttgatagctg
      361 aataatttaa gaactgtcaa gggaggtcag tcctacagcg attcagcaag acagccgtga
      421 tttctgaata tcattaaaat ccttacttag gataatttga gagcatggaa aaacaacaat
      481 gcctgaaagg aggccctgct tttctgttaa ctattcctgc cctgaagatt agcagaaaga
      541 cttgtggaca acatcaatat agcatggaaa gaaagaaagg ggttaa
//
LOCUS       KCLJ01002513             729 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 280855cal ultra-conserved element locus
            uce-5930, sequence.
ACCESSION   KCLJ01002513
VERSION     KCLJ01002513.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 729)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 729)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..729
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="280855cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>729
                     /note="ultra-conserved element locus uce-5930"
BASE COUNT          222 a          135 c          119 g          253 t
ORIGIN      
        1 aaaatttcca ttcctcttcc tgatttgcac acagatgttt gaaggaatgg cagtgtttac
       61 ccaacttgag aatataatgg cttaagttgc tcagaaccaa aagctatctt ttccaagagc
      121 tgtttctaat acctactaaa attgatagca ttgttttcac attacttagg tgttaaaatt
      181 acatggtggt gttcctttaa aaaaaccaaa cctaatcctg ttaattcaaa gtgaataaca
      241 aacaggacta agactttttc ccaagttgtt acatttattc aacctgcttg tgttttgttc
      301 ttcatcataa ttatttccaa gtcaaatctg cgctgatttc cttgcggacc cacatacctc
      361 tgactaactt aaagaattga gctgggataa ttcacactat tccttggggg tcatgttctc
      421 tgtttttttt caaggacatt tttattacaa agctgatgaa atttgcatat taattcattt
      481 ctttcaattt tttaagatta aatgttgtca acatgtatca gtgcaaggct ctgacagtgc
      541 tgatgaaatg ggtcagtcaa gcttgaacat ttagagtaat gcagccatct gcaaccccca
      601 agccccttgt gtagtttagt gctaccattg caacttgatt aaaaaaaaag ttttattcaa
      661 tgcaggatat taaaacatta tcagtgaaat gatatgtgtt actcctgcca tttgcaggga
      721 aagcatatt
//
LOCUS       KCLJ01002514             653 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 280965cal ultra-conserved element locus
            uce-17, sequence.
ACCESSION   KCLJ01002514
VERSION     KCLJ01002514.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 653)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 653)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..653
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="280965cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>653
                     /note="ultra-conserved element locus uce-17"
BASE COUNT          195 a          124 c          112 g          222 t
ORIGIN      
        1 catctaattg tgaagtttct tgatctgctc aaaaatgctc ctaaactaca gagtaccttt
       61 gaattttcat tgttggctga atatgacaaa actcttggta tcatatctta ctctcactca
      121 tcttgagcag atcttgttag tgcagattag atcttgttaa agattaattc ttaaagcatc
      181 ctcaagcttt cttttccaac aaaggaaaca tcaattatag gctcacacat aaactttgcc
      241 cctatcttga atacttgctg ccctttataa atcttagatt tcttcccctt gtgtgtgttc
      301 aaaggagaga ttttattgcc tccaggggtt gttaaactga ttgcaatacc acgtatttag
      361 agcagttcag tgggaattaa gctggttcaa tgctgtcaga cctagaatat agctgtcaaa
      421 tagcattaca agtaaaacac ccttgataag aaataatgac caaatgtcaa tctgtttttt
      481 accagcagcg ctacagacgt agccttgcca atgaaaaatg caatattttg cacattatag
      541 tagctgtgct tttgtgatgt tacaaagggt gtttcagtct ttcaatgtag cttattttta
      601 gatgatagga tttgatcaca aaaatgtgtc ttggacctac ctcggattca aac
//
LOCUS       KCLJ01002515             553 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 281076cal ultra-conserved element locus
            uce-2701, sequence.
ACCESSION   KCLJ01002515
VERSION     KCLJ01002515.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 553)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 553)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..553
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="281076cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>553
                     /note="ultra-conserved element locus uce-2701"
BASE COUNT          117 a          126 c          162 g          148 t
ORIGIN      
        1 agaggaggcg gctgacggca aaagatatcg gtaagaggaa atttctgctg gagccttctg
       61 agggattggt gctgccttgg cccttttaca gagggctctg ctggcagggc atttttgcag
      121 gttaattgtg tcctgagccc tcattctggc attgcctgcg ggcaggttgg tagtagacac
      181 agccacatca tcttaaccag gctctgctct tcacaggtcc aaatcagtat caagtgtctc
      241 cttttgaaac tccaggagct ggaagtgtca tgtgtttatg ttacaggaac tcctgaagcc
      301 tggagagtga tgatgtctct gaagtcgggg ctgctggctg aaagtacgtg ggccttagat
      361 accataaaca tcctgctcta tgatgacaac agcataatga ccttcaacct cagccaggtg
      421 ggtgcagatg ctctctggga caggtctttg aagtgctagc ctggtgtcaa tgagcagctc
      481 ctgctgtacc tggagcgtgg ggtgtgggca gctgtgagcc tggcctgacc ttccctgaga
      541 gtcgttttct gat
//
LOCUS       KCLJ01002516             623 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 281185cal ultra-conserved element locus
            uce-672, sequence.
ACCESSION   KCLJ01002516
VERSION     KCLJ01002516.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 623)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 623)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..623
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="281185cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>623
                     /note="ultra-conserved element locus uce-672"
BASE COUNT          156 a          134 c          114 g          219 t
ORIGIN      
        1 ataaatatat tgtgtgtgtt ttctgtatgt gtctctctgt tttttatata taaaaattgg
       61 tcagtctgtt aaactggatg tatttgtttt taataaagtt tgccctgcct ttgtcatata
      121 ttcctctacc acaggatagc tacagctctc agggtatatc tcagccccca accccaggca
      181 acctgccagt cccttcccca atgtccccca gctctgctag catctcctca tttcatggag
      241 atgaaagtga tagcattagc agcccaggct ggccaaagac tccatcaagc cctgtaagtg
      301 gctctggtta ttttggtttt tttgtaatta attatatttt aatgcttgct tgtttgtttt
      361 gtaaattcct tttctttatt atttatccac taaacagttt tctttcttta taacactggg
      421 tacaaattct gctctcggac acatgactgt aagttccact gcctggcttc agtggggcct
      481 gagcatgctt atccaagggc aaaatttgtc ccaacagtac tttgaaataa gaaagagtaa
      541 aattgtgtgc atcatgcaag tgtgctgtct ggtaaaacag cagttgttgt gaagaaaaca
      601 tccttcctgt aacgcatcag ctt
//
LOCUS       KCLJ01002517             729 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 281296cal ultra-conserved element locus
            uce-4528, sequence.
ACCESSION   KCLJ01002517
VERSION     KCLJ01002517.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 729)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 729)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..729
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="281296cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>729
                     /note="ultra-conserved element locus uce-4528"
BASE COUNT          202 a          156 c          177 g          194 t
ORIGIN      
        1 tgctccaagg atgcttgtgg ctgcccccta gagctgcctg tgctgtgcag gagctgctgg
       61 gcagcctctg tgccagccca aggtggtttt ccagcagtag ggacagatat tgagggatga
      121 gctcggggct gctgagtgga aacattactc tgtgctgtac cttcccgaca tcatgaacac
      181 ctcagcccct ggggaaaatc tgggttctat cagctcttat aagcaagtgt ttcgaaaggt
      241 ttacagaaaa gtaaagtaaa cagagctctg agtaacaaaa gagccccgtt tatgcattct
      301 ttgattcact gtaaaggatg gtgtaaactg actttttaac caagcattag gcaagatttg
      361 ggcccccgcc attatataat aaacagtgac atggctatat taaaatattt acttaatgca
      421 ctgaagtgac ttatagtatg agtggctact caataggatg gcctaagtgt taaggcgtca
      481 ggtgccatcg cctgtataaa tattctgtgt gcacttgttt ataggaaaac cccatctgga
      541 tttggctaaa acagcagaca ccctgctgac cccagttttt gctattggaa aatataacac
      601 aagtgttcac tcatctagaa taacagcggt ggttaagtgc cagctgacag acagaagggt
      661 attggctttt ctcaatagac agcaggctgg gtgctgtgaa cagcagcagc tccccaagat
      721 ttacagcat
//
LOCUS       KCLJ01002518             390 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 281406cal ultra-conserved element locus
            uce-6275, sequence.
ACCESSION   KCLJ01002518
VERSION     KCLJ01002518.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 390)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 390)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..390
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="281406cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>390
                     /note="ultra-conserved element locus uce-6275"
BASE COUNT          126 a           74 c           68 g          122 t
ORIGIN      
        1 aaataaatag aattgcttat aaaaaagtgt tcaaggaaaa ggttgtgctt gcctgaagca
       61 gaggccagat gctttgactt ccagctttct tccatcaaag ctgtgcagtt tcgaaattaa
      121 aatctgcagc aataatgaaa catattaaaa tgcatgcaaa gtcttgaggg cttataatat
      181 gctaaaaact ggcaatgcat gtttacatcc atatatcaac ttggatgtgc tgaaaagatt
      241 taaagtgtaa aatatgcaaa tatgtgtcat attgtcacac ttggtctccc taatggaact
      301 ccctttcatc tcaactctcc ttaatttcat gaatattgca tgcccctcac accttttact
      361 cctgctgttg ctaggctgag aagattatga
//
LOCUS       KCLJ01002519             665 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 281508cal ultra-conserved element locus
            uce-308, sequence.
ACCESSION   KCLJ01002519
VERSION     KCLJ01002519.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 665)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 665)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..665
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="281508cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>665
                     /note="ultra-conserved element locus uce-308"
BASE COUNT          198 a          124 c          120 g          223 t
ORIGIN      
        1 tttgaataat ggcttatttt ttatgcaagt aataaagaaa tctgtctttt tcagtgatag
       61 tatattcttc tagtgaaata gaattcaatg agcagtggcc tctattccag accatttata
      121 attctgcagc agttctgggt gcacatttac taaagtgtga ccttgggcag gacctgtagt
      181 cacagtgcaa agtaaaatga agtattgcca ctgcttcctt tctcctcttt ggaagttaaa
      241 aatactgtgc atggcttttc tacagttttg cacatttgag ttagctcctt acacagcgga
      301 tacccttaat aaaatgacaa cagtaattta gttttgtcat ttgaactggc actggctaca
      361 tggctcaaaa atacagtatt agagtagttg aatgtgtgtc gggtctaatt cttttttcca
      421 ttttccagag agctgctttt ccattagctt tgggaaaaca cactggcaga ttcatttaaa
      481 ataagctcag ctccaccctt catataagtg acttagcctg tgcaataaga aattaagatc
      541 aagggacgtt atttcattag cctgtcgttt tgttatttgc attacaaaga cagcattaca
      601 aaacacaacc atatctgtaa tataactcat ctcagggagc cttaagacac ttactgtagc
      661 atatg
//
LOCUS       KCLJ01002520             530 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 281619cal ultra-conserved element locus
            uce-6576, sequence.
ACCESSION   KCLJ01002520
VERSION     KCLJ01002520.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 530)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 530)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..530
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="281619cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>530
                     /note="ultra-conserved element locus uce-6576"
BASE COUNT          146 a          108 c          109 g          167 t
ORIGIN      
        1 ctcaggagct gcagggagga tttgtcaggg ctgatccaca cccttggggt cctggtgctg
       61 acctgctcat ccaggggacc ctggcaaggg aaggctctcc acttgtccgt ggcatgtcaa
      121 gcacagctca gttctggtag cttctcccac ctttgactaa ttgctgacct gacatctttc
      181 tgatagtgac cttgtttcag ctagtaattc aaatatcttt cagtgtcaga aataataagt
      241 gccacagtga gatgaacaag cagagcttaa gttgaacaca gattaatggg gttttaatat
      301 tcctaattta atcactcctt tctgtctgaa tgtgtgcaac atgatgtagc agctaattat
      361 ttttttaacc atgatgagga tctttcctaa tcatttttat atttaacatg aatgaaggga
      421 gagcagtgat taatgaggga ataaatctta tgaaacagac acatgatcag ttaaaaatac
      481 agctgtctga ttattttttt tccctttccc tgtactgcaa atacttaacc
//
LOCUS       KCLJ01002521             608 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 281722cal ultra-conserved element locus
            uce-2245, sequence.
ACCESSION   KCLJ01002521
VERSION     KCLJ01002521.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 608)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 608)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..608
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="281722cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>608
                     /note="ultra-conserved element locus uce-2245"
BASE COUNT          179 a          147 c           93 g          189 t
ORIGIN      
        1 cgtaagccac acaaatagcc atatttgtta acattcatgt gactcttcgt ctgagctgta
       61 tttccttgag tacaccacaa tgaagagttt cttttaatag ggatcaacca aaaacaactg
      121 tgagggactt ttctctctcc ctccctccct ctctctctca ctccctctct cactctctct
      181 aaacctttta cactgcggtt gaacaagcct ctggataaag actttatcca aaaaccccct
      241 ctttaaagtt atttcaaatt tctctgcaag gctttcagaa atctgtttgt ttgagggcag
      301 aattagatgt gaccggcgtt ttattgtgac ataaaaccat atttcttccc tggaagatta
      361 aaaaataaaa tcggttaata agaaaagctg tcagcaacag aaaatggctg acataatccg
      421 tttatcctcc gagcaataaa gatattggtc cttgggagtc tatcctctct ctcatgttat
      481 ttcgcccaaa acattatctt cccagcattc tgatggatta agaagtcata tgggagatag
      541 cagggaaatg acagatacaa aaaaaaataa tatcctttca tttcccctcc tccctgcact
      601 ctctctct
//
LOCUS       KCLJ01002522             765 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 281823cal ultra-conserved element locus
            uce-4250, sequence.
ACCESSION   KCLJ01002522
VERSION     KCLJ01002522.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 765)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 765)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..765
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="281823cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>765
                     /note="ultra-conserved element locus uce-4250"
BASE COUNT          245 a          134 c          131 g          255 t
ORIGIN      
        1 tataggaaaa gcagtttatt cacattcact tttcatcata catatacatt aaatattaat
       61 aacatcgtat gaatattcat ctctgtttaa tattcattta tacacagaag tttacagcag
      121 atccctttaa cttttggtgc caaaaccagt gttcaaaggg ttgtgctgcc attgttcctg
      181 caaaacgttt acatttatct gctgtaaaag aggaagagtg tcgtgtttag ttttaaaatg
      241 ccacaaataa cagatttata gatttttcta aatacattat tttaccttga cagcattaat
      301 cattcatgct tccttctttc atttttctac ctgcaatgga ttattgaaac agaaaataac
      361 aacgggaaag gctacaagca gtatcaaaat gtcaagtttg tacttacagt tgtatgtgcg
      421 tagacagggt caagagcctc aattatttgt atatgtacac agtggtacta catgaaaggt
      481 tatgtcacct gcagctattt tcttgcagat ttaaatagga ctgatattca actccacagt
      541 cagccactga catggaacat agaattgtaa aatactatga actcttatgt caggacctaa
      601 aatatgaact gggtgattgc aaggtgtagc tgtgggcaat cctatgtatt gcagtgtaag
      661 tcctttaaat tactttgtgt tatccctgac ctgttctttt catttaagca taagccagac
      721 caacatggaa gtactttcca gggagaagaa aaacccttga tattg
//
LOCUS       KCLJ01002523             412 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 281930cal ultra-conserved element locus
            uce-2179, sequence.
ACCESSION   KCLJ01002523
VERSION     KCLJ01002523.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 412)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 412)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..412
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="281930cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>412
                     /note="ultra-conserved element locus uce-2179"
BASE COUNT          134 a           61 c           86 g          131 t
ORIGIN      
        1 tattttagga gcctaaactt aggatcatgg actcttttga tatgctgact ctttcagtat
       61 gcaagaagct gtacctaagg acttgagctc tcttaagttc gtgactctaa atcagtttag
      121 atggtgcctc aaagcaaaga gtcatgaaac tggagtgggt ccagagtgaa ttaatctgaa
      181 attaatttga ttttgaaagg ctccatctgg ctgtgtttgg aaaaggcatt tagacagata
      241 tataaacaaa tgatcatctg tattctatat gccagatgtg gtgtcaaaaa aatgaagaaa
      301 tgataaaaaa ggaataagct gagggggatt ttgctataat gatgcttaac ttgttgaaat
      361 cacaactgca tcacactttg gacaatgatc ttctcttata ttcagatttg ta
//
LOCUS       KCLJ01002524             720 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 282037cal ultra-conserved element locus
            uce-7157, sequence.
ACCESSION   KCLJ01002524
VERSION     KCLJ01002524.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 720)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 720)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..720
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="282037cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>720
                     /note="ultra-conserved element locus uce-7157"
BASE COUNT          247 a          104 c          127 g          242 t
ORIGIN      
        1 agtaaattag aaaacaataa aaaaagccaa agggtgaaaa caaattcttt tccccaggag
       61 tacttctgtc tgttttacta caactatttc ttaagggtat taggtgtcta ttcatagtta
      121 ccaaataaaa tagcattttt gttttaattc attgcttctt taacaaatgc taactcccat
      181 ctctgcttct ttaaatccaa aatctccaca ttcaagccta agaagtattg taaaggctgt
      241 aaatcttgtt ttaatggaat gtacatttag ctatgaggag ataattgacg ttatggaggg
      301 cctagatgct gaattatata ggttatctaa tacaaagggg actcattacc gaagcactac
      361 aaacaagtag taatatatgt atattgttct gagtggcgtt atagcaaaag tgttcaggtc
      421 tgcagggatt tataaaacac aagaaaacag cagacatgca cttgtaaatt tgtctcattt
      481 gtctctgaag ttaaaggtta ttcccttgat ctgaatttgt aataaaaaca tgctagacta
      541 aggtttgtag agaatgtttg aatatgtaaa ttgtgtataa tgataggcaa ttatagggta
      601 aaaactggac cttatgaatg ttagagaatt gcatggagca tcaaagtatt ttccttcaga
      661 tgaaatattt atcttttatg catgttataa gcactttttc aaaggtattc agcaacctat
//
LOCUS       KCLJ01002525             706 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 282145cal ultra-conserved element locus
            uce-2346, sequence.
ACCESSION   KCLJ01002525
VERSION     KCLJ01002525.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 706)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 706)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..706
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="282145cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>706
                     /note="ultra-conserved element locus uce-2346"
BASE COUNT          191 a          180 c          107 g          228 t
ORIGIN      
        1 aatattattg ctcgttcaca gtgccttgaa tttactgtac ttaaaataga cacttgtacc
       61 aatggccttt ttattatcca aaaaatcaca tatacaccag ttctttctgc tagcaaaggg
      121 aggcaatctg atccaacgtg ggctgaaacc tgagtaggtc actgtacacc atgataaaat
      181 tccctaaccc ctgagccaaa tttccctgag ggggccctcc tacttctcct ttactttcca
      241 agctgacttt tccattccct ctctcgtctt ttcctcccct tcatctcttt catttcccct
      301 accttaaagc cttgatatct gatctgctgc tgatactcag gttacagttt ttacagctta
      361 ggctgtctat tgctgtatac attcctttct ttctgctctg ctgtgattac ttaccagagc
      421 ttattttaca ctggtccaga tgaaagcagt tcagatgaag ggaaacagcc agcctgtttg
      481 aacattacag atacaaacct acacaagggc acattgtgct ccttctgtca tttcactgca
      541 aacattttgc acactgtaac caatttgtta cattattgtt ttctccaggt ctattaagaa
      601 caactagact cagttcatca gtaaaaaagg gtgaacgatc accacaggat tttaactttc
      661 tcaaaaattc aaactacccc cctgttttag atgatagcag ccaaca
//
LOCUS       KCLJ01002526             574 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 282255cal ultra-conserved element locus
            uce-2180, sequence.
ACCESSION   KCLJ01002526
VERSION     KCLJ01002526.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 574)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 574)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..574
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="282255cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>574
                     /note="ultra-conserved element locus uce-2180"
BASE COUNT          175 a           95 c          112 g          192 t
ORIGIN      
        1 gtctgtttag tgaatctagc atgtttcatt ttgtttgtta aatcatgaaa ttatacctca
       61 gatattctgc actcctgcag tatgcctttt gagcacaata ctgctgtagt ttgagtaacc
      121 attctcgcta gactttgctt aaatatttta tgttttgaat gaacaactca tacagggttg
      181 agctaagggc ttaatcactc ttaatacaat aaagcagcac tttaaaatat tattaacctc
      241 atctgtctag atttggaact aatagaccat tgtgtgtgta ttgtctttat ccctgccagt
      301 tatgtacata tttattaatc cactcttcca gaggaaaaat ttctaaagga aaaccaacag
      361 taaccttcaa gtgagcgggc acaggttaga agggcactaa ttaaatgtca gacttgacag
      421 attaaaatta tgaaatttaa aatcaccgtg gagctctttg tcattgtcaa attaggagtc
      481 agtgtgatga ggagcatgga agtgaatggt ttaatggatt gaatgggaat gtggcttagc
      541 agcagccttt tcttgaattc agatcagcct gtag
//
LOCUS       KCLJ01002527             640 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 282364cal ultra-conserved element locus
            uce-2119, sequence.
ACCESSION   KCLJ01002527
VERSION     KCLJ01002527.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 640)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 640)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..640
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="282364cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>640
                     /note="ultra-conserved element locus uce-2119"
BASE COUNT          151 a          142 c          160 g          187 t
ORIGIN      
        1 ttttcagaag ggataaaatc aatggcctgc accagctgca tgtttaaccc agttttgcct
       61 ctgtcggagg tgcgggcgca gccgcgtggc tgcaggagga gccctttgct cccgacagaa
      121 ggggccccgg gcgccttccc aaaagcacat aactgcgtct cctgctgtac ctgtaacaat
      181 ttaatcgtgt gagtcagccc agtcaagcat ccccagctca tgactgggag acatgaaatt
      241 cattgtcatt attgtccctg tcattttgga tcattatatc ctgctgcaga attttcctca
      301 ctccagtgct ttcttacctc caggaagcag ggattatggc tgaggttggg gtgggggcag
      361 gactgtgaac tacatttacc tcaggggagc cacagattaa attggctttg ctttctgact
      421 tgctggattc gtctgtttgt acgctctggg tttaaggttg gaaatgatga atattccggt
      481 gaattcaggg cctctctttt ttaatgcttg tataagcaaa ggattgggtt tgtgtccctt
      541 aagaagtgaa cggggaataa ttcttcagat cgtgttacca aaaagattta agattattcc
      601 tgaacaagac gacgttactt gttcatcgtg gcacaaacat
//
LOCUS       KCLJ01002528             653 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 282473cal ultra-conserved element locus
            uce-2842, sequence.
ACCESSION   KCLJ01002528
VERSION     KCLJ01002528.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 653)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 653)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..653
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="282473cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>653
                     /note="ultra-conserved element locus uce-2842"
BASE COUNT          197 a          117 c          141 g          198 t
ORIGIN      
        1 aggtcctaga agtcctcctt gatgtacaaa ctgtgctttg aaaattaaca ttttgcctcc
       61 tgccagagac agtagatatg ccagctggta atagctggtt tctaatttgt gctagaagga
      121 agaaaaagaa aaaaaatttg ctgactttag ttcttagcct atcagatgaa gacttgctgg
      181 tgcattagag gcctattcaa aacagggctt ttcttgcaac aggagcccct aacaattggt
      241 aatgaggaca gattccgaat tgtttgtgag cagctgctta gtaggtaaga gcttgtttgg
      301 attcaattga acagtgtttt tagaagcagt tactgacccc tgacccttcc tacagactgg
      361 gttgatggga ttagggaaag ctagcgttca gcttacactt ggctataaca agctggcaag
      421 agataacata ctttttaatt atcaagttac acctctgcca aagtttgtct gtgaatttac
      481 caaatgggtc aatgaactat aagaaatcaa gccaggctat gggataatag ttacataaga
      541 aaacagtctt ataattaata catttgtata ggggtttttc ccctttggaa atatttcaca
      601 ttttcccatg gcgctcattg cagaggcata tgttgcagcc aatgcagttt aag
//
LOCUS       KCLJ01002529             640 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 282582cal ultra-conserved element locus
            uce-5392, sequence.
ACCESSION   KCLJ01002529
VERSION     KCLJ01002529.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 640)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 640)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..640
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="282582cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>640
                     /note="ultra-conserved element locus uce-5392"
BASE COUNT          199 a          119 c          117 g          205 t
ORIGIN      
        1 gccacttctc tgctatagca cacataccct aaaccttaaa gagaaaataa aagctgttat
       61 ttccaaatga aaagatgttt caagtattgg gagacactga aagaaattct gcagtttgaa
      121 gatacttcaa cttaactact aattgcaggg gaccagtggg cgtaattttg gcactatatt
      181 agctttgcca ctccatgaat aatttgcata caaaatgctt tattttggca atctattaaa
      241 gagctataca gtatttgtgg cttatcgcat tcacgcagga agcaggatcc ttggccatct
      301 cgttaaattc tgttgatgca taacaattta aagcatggca caagctggta tgacatttaa
      361 agatgccttc acttaattat attacacaaa tattgggttg tttatccttg ggaataaagt
      421 ctttttgaag tcaaagttgg catgcgtata aaggagtaaa ttttaactga tccctcaagt
      481 gggcctccta gctgcaaatt ggggttcttg cattttttaa attatttgtg ataagaagca
      541 ttacactttg aatgcagcca ctggagtttg tttggtactc cctcccttct tctcccctaa
      601 tggaaaatac agtctttagc aataaatcag cacatgaaac
//
LOCUS       KCLJ01002530             618 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 282689cal ultra-conserved element locus
            uce-4147, sequence.
ACCESSION   KCLJ01002530
VERSION     KCLJ01002530.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 618)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 618)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..618
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="282689cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>618
                     /note="ultra-conserved element locus uce-4147"
BASE COUNT          191 a          130 c          132 g          165 t
ORIGIN      
        1 taattaaaac tcaaggagaa aaacctcaat tgggaacagg tagacacctc tgactctaat
       61 ttatgtgagt ataaaagtag taccaagatt ggtttaatta cctgggaaca atgtatatct
      121 cgtgtattgc agatcagctc gttagtgcca cttccagttg aaattgataa tacatccctc
      181 actcaaaaca ttgtctccca atcaccatgg ttactgccag gtttttccac aaggaccaag
      241 catattcatc tgtcaagtat gctaatgggg aacggaccct gtcacacaaa ggagcaggct
      301 attcaaacat acacttgcca aataattgta catgtcaaaa gaatgatgct tgttatttgc
      361 ctaatattat cccccagaag tgggaaatag ttcagctctc aatgcaaaat ggcttgccct
      421 tatcaaatag gcaatttgct gataatttag actattagag atcttggggt ggggagacgg
      481 tggcaaatgt attttataat tgcactgaaa gcagaaatta ggtgccccag aggtgcagta
      541 acgaggagca tcgcaggagc tgatggccaa tgagaggggc tgctcacagc ctcccctctc
      601 acctctgtca ggtacctg
//
LOCUS       KCLJ01002531             289 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 282797cal ultra-conserved element locus
            uce-6372, sequence.
ACCESSION   KCLJ01002531
VERSION     KCLJ01002531.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 289)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 289)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..289
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="282797cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>289
                     /note="ultra-conserved element locus uce-6372"
BASE COUNT           75 a           71 c           69 g           74 t
ORIGIN      
        1 cgcccgctgg cgccgtgagc tgccacctgt tgttaatcta cccccgggta atccattctg
       61 gactgcgtca gcagttcaaa agggcactgt tagtattttt tgccagcttc aattaacgtg
      121 agattttgga ggcccctctg atcacatttc atctgtcatg agtcaggaac aaaccagcca
      181 gattgcagtt gagaggagag aagagaagga gtttattgca aaccaaaaca acaacagtgt
      241 ttgtgggacc ttctcgctcc tttcaaaacc gtgactggaa attccaggc
//
LOCUS       KCLJ01002532             426 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 282905cal ultra-conserved element locus
            uce-3933, sequence.
ACCESSION   KCLJ01002532
VERSION     KCLJ01002532.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 426)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 426)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..426
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="282905cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>426
                     /note="ultra-conserved element locus uce-3933"
BASE COUNT          145 a           78 c           65 g          138 t
ORIGIN      
        1 cccacaaggg ccagaactac taaagaattc atttgttaca accactgttg ttctgtctta
       61 atatgtgagc atattctgaa actaatattc acacaaatgc aattgttcaa ttgatgcaac
      121 tcagtaattt ttattgcaac tggaagacaa tacatcacag aaactttatg gtaggttttg
      181 ggaaagtgtt atttacaata ataattgatg aaatagtttg tctttggcaa tatgattaca
      241 catcaagaaa atgtaaaatg caagtatgcc tctaaatcaa caatttcata tttcctaaag
      301 atcagctgat tgcacttgcc ttcggactgc tcatttaggt aaacacaaat acaacttaac
      361 atcactgttc attccccgtc acagttcgta ttttaatatt gatgaaattg gcagtttcag
      421 acgcca
//
LOCUS       KCLJ01002533             641 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 283008cal ultra-conserved element locus
            uce-7487, sequence.
ACCESSION   KCLJ01002533
VERSION     KCLJ01002533.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 641)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 641)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..641
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="283008cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>641
                     /note="ultra-conserved element locus uce-7487"
BASE COUNT          188 a          150 c          112 g          191 t
ORIGIN      
        1 ttacaaactg agactcagca ataattagta ccttttattg tccttaatga cctctcactt
       61 agcaaacaat ctttcttaat gtggttcagt acactaatgt ctcccaggtt ttagctttct
      121 cagttcccct gcaccatggt ttgacctgca ggcaaatgaa gccattcaaa tatttgctta
      181 tcttgtcatc tgttctcatc agaccttgca attcctgtca tgccccacat gtcagtttaa
      241 agcataacgt cattaatacc tccagtgcac taatggatgc ttcacacatg aacgcattaa
      301 tgaaatgtgt tattgttttc cctcacagga cattaacaat ctcgctcacg ctgagcctct
      361 gaagccctgc agtgctgctg aaaaccacta gctatcaaat gaaccctcag ttacgcctca
      421 gtaactttaa gttcaagttt atcactgaag tgtcactaat gtgaggagaa gatacaagcc
      481 tctaaggtct tttgggccca gcttcaatta ccttaaagag taacaggagg caatagctgc
      541 aagggaaaaa tacaccacca tataaatgaa atgctgtcaa gacaaaatag gaaagatctg
      601 ggtgtcaatg tggtaacttg tttctaccct ttgtctctgg a
//
LOCUS       KCLJ01002534             728 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 283121cal ultra-conserved element locus
            uce-6932, sequence.
ACCESSION   KCLJ01002534
VERSION     KCLJ01002534.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 728)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 728)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..728
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="283121cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>728
                     /note="ultra-conserved element locus uce-6932"
BASE COUNT          201 a          212 c          163 g          152 t
ORIGIN      
        1 aaggtacaga ggtcctcctc tgcctagctc agcaacatga actccattat gctattaaag
       61 ggcctgtctc tgggagccat ccccatccaa gtcctgagag cacacctgaa acaaacagct
      121 gccctctgac acagtctgtc ctcaccccag tcacactctc tgctctctgg cccaaggaca
      181 gagaaaagaa gtaatatcac tggtgccaga agtcagcagg aagcaagctc ccccctcttt
      241 ctctttctct ctctttctct ttcatccttc aggacacaaa cctgcaagtg cgctcgttta
      301 actcaagctg cctcgacttg caacgtgagt ctgtgaattt gcaggaacat ttacaggtct
      361 ggggatcttg tacaaacaag tgctttctcc tctctgagca aggctcacag tgactgcaaa
      421 aaggcaaaag gaaagatgtc taagctacag cgcttcagca gaaagaaaat acacatgcaa
      481 caccctgaac atcaaagcaa tccccttgcc ccctcccgca gcccccatgc tgccaactgg
      541 agtgccgtgg gctgatggat tttccagcag cacttcaaca gccccaggac agcaacccct
      601 tgcattagcg cagagaaagg aaacaggcct tctgcacagt attcacaaat gctgcattgg
      661 atccattggc tcaggccaga gggaggaaga aggggaaagc aaggatggga aggtgagagg
      721 tcccagcc
//
LOCUS       KCLJ01002535             435 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 283231cal ultra-conserved element locus
            uce-3551, sequence.
ACCESSION   KCLJ01002535
VERSION     KCLJ01002535.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 435)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 435)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..435
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="283231cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>435
                     /note="ultra-conserved element locus uce-3551"
BASE COUNT          124 a           73 c           99 g          139 t
ORIGIN      
        1 gagccctgct ggtgacagga gcagttgtgc cttggcagca ggggtctggt ccctgttggc
       61 caagcagggc ctggtggagc agtttgaggc tgtttgactg tccctgtcat cataaggttt
      121 acggatggtt aatttattct ttatagcaca gtcattgatg gctgttaaat cacaaatgag
      181 agccaataaa gggtgaattg cagctgaaat tacactgttt atatgacagc agagtgctgg
      241 ctaaaagatt catatgccgc tgatgaagta cgttataaat tttaattacc atagtttgta
      301 caaatgacat gtttgaaatg ctattgagta atgtgaccct gataatgaaa ctataaaata
      361 aatcattaac tttctgaatg agctttttta tttccatgct acatgaagta aactttccaa
      421 tttattccgt tgcag
//
LOCUS       KCLJ01002536             733 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 283334cal ultra-conserved element locus
            uce-1183, sequence.
ACCESSION   KCLJ01002536
VERSION     KCLJ01002536.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 733)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 733)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..733
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="283334cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>733
                     /note="ultra-conserved element locus uce-1183"
BASE COUNT          230 a          183 c          140 g          180 t
ORIGIN      
        1 atattttcca acacataaaa gggagaagtc atgttattca tgtagtgtaa gtccagtgta
       61 gaagctgcca tggtttacac caggaatgca cctcctagta gcaagctgag agtaactaac
      121 ccctccaaaa taaagacaag cacaccctcc ccaccaatag aaataagagg tgccacaaac
      181 aggggaaaac aaacagcgtt caagcaggaa tattacagat gaagcaaaca cagcaatgcc
      241 acaaaagtct aaacacttgt taaaccgtct gattttagaa catttcagcc atacaacatt
      301 attcaactac tcatcactgt gagaacaggc aatcaggaaa gctaatttct taattagctc
      361 tgctccggcg gtaatgattg cagatcgtgt caactaaaat ctgtttggat ttctgtaaat
      421 tggagtccga caagcctgca gttccgtcgc caacctgata actctcaccc ccctgtcttt
      481 tgtttttcct tccagccttt ttcctgtcgc catctcggta tttaatctga caccgccagg
      541 cagcgagaag ggtttactct tccccttgcc gagaaagagc acgagagagg aggaaaagca
      601 aaacatttac gtggggacag gagggctggc tgcacaggaa acctggacca aacctaaact
      661 cctgacaaaa gcctttaatc tttctcacat tcctcaaggc attctcctcc tgtaatagga
      721 catattcctt tca
//
LOCUS       KCLJ01002537             521 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 283439cal ultra-conserved element locus
            uce-5409, sequence.
ACCESSION   KCLJ01002537
VERSION     KCLJ01002537.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 521)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 521)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..521
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="283439cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>521
                     /note="ultra-conserved element locus uce-5409"
BASE COUNT          158 a           97 c          111 g          155 t
ORIGIN      
        1 gcctgaatga cctgtggaac acagtgagtc aagcagaact ttgtctcctg ctgcatactt
       61 gcagtgccaa agcacagctc cactaaatat aatggtttcc tatagccaag catgtttcaa
      121 gagcaatttg caaatttgtc aaaacccttt caccatgttt aaaactgaga agagtaaagt
      181 gctcagagaa tagctgcata tagtcttaaa atcttgcaag aagtgtgtgg atataataac
      241 attttcacca ttgatatcta attattttgc ttgcagagtg cctgtaaaga tgacgacgaa
      301 agcaccaacc tttacacagc cgttacaaag cgttgtggca ctggagggta gtgccgcaac
      361 ctttgaggct catattagtg gtaaggcttt gattcattct tccaatattt ttttagaatg
      421 tttatgatga gatgatgaca cttttcatag atctggtatg aatgggtcaa gatgagtgct
      481 gaaaccgctc cttgaaaggg aacttcacat ttggatgatg a
//
LOCUS       KCLJ01002538             358 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 283551cal ultra-conserved element locus
            uce-7251, sequence.
ACCESSION   KCLJ01002538
VERSION     KCLJ01002538.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 358)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 358)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..358
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="283551cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>358
                     /note="ultra-conserved element locus uce-7251"
BASE COUNT          103 a           72 c           57 g          126 t
ORIGIN      
        1 cattttgcca gcagttgcat caattgtcat ttaactgccc taaataatgt gttctcttcc
       61 ctgctgtatt aaactatttc tatcaaggct aatgattttc tgatttccac atgccagtga
      121 gcttggcagt aacaaatgat gcccctcttt tgcatgttgc aagtagctta aattatattt
      181 tacataccca tttaaaggat cattagttaa gttaatatcc ttgctattca ggaagatcaa
      241 gcattttagt aaaggatagt ctcactatac atcctttgct agagctgagt acactgttag
      301 cagctttggc ttggtaaatt catcctcact acatatggaa aaaaccctag gtatctat
//
LOCUS       KCLJ01002539             442 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 283650cal ultra-conserved element locus
            uce-4232, sequence.
ACCESSION   KCLJ01002539
VERSION     KCLJ01002539.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 442)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 442)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..442
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="283650cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>442
                     /note="ultra-conserved element locus uce-4232"
BASE COUNT          155 a           81 c           69 g          137 t
ORIGIN      
        1 tgcacccttt tagtggacat gaagaaaata agaccagaca taaatgatta atgcagaatc
       61 ttggaagaaa atattgcagg gtgccttgct gtttgattac aagccttgga attagtcaac
      121 atttccataa ttctaaacca atatacacct gttttcccac tgtgatgtga aggcacaact
      181 taatttaaca gaaaccccgc tgtgctaaat ctctcattaa ataccaagct agttctgtaa
      241 tttaaagttg cagcactact attttaactg aattgccttt gtattataaa attaataaga
      301 agttaatgat gcactttgct gtattcgctc agattttttt tttcacagca acaacaacga
      361 aagataaaga agaaaaacat gtcaccagct gacatctcaa ggcttttaat cattttcccg
      421 aggatagaaa ttcatttaaa ag
//
LOCUS       KCLJ01002540             538 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 283761cal ultra-conserved element locus
            uce-2531, sequence.
ACCESSION   KCLJ01002540
VERSION     KCLJ01002540.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 538)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 538)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..538
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="283761cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>538
                     /note="ultra-conserved element locus uce-2531"
BASE COUNT          163 a           84 c          105 g          186 t
ORIGIN      
        1 accagcaaac cttttttaat tgcacattct atttgcccct gttccacacg ttcaacctgc
       61 agagaagaaa gacatgtaaa gattaccaag gcaagtttgt aatgaagcgg atgcctcttt
      121 gtctgtcctt gcgccaacag cagcagaagg gatactaatt agagggtgaa ttattagctt
      181 cccatggtgc actgcagggg cattaaaaat gagtgtagtt tgttgctttc cttttagatg
      241 gttagcactg gtttaatata ttcgtgtttc taggtgagca gcaggggaca gtttttatta
      301 ttataattgt tgcataatta ctggcctagg gttgcctatt gttaaataaa aatgctgaga
      361 tactaatgtt ttattgaaca gtacaagtag ataaaattgt aatatatttt cctgaacagt
      421 ataagcttgt tatctggtga caagtctaag ttgtcttgtg gaaaaaactc tgttttttgt
      481 aaagactaag tattaaaact tgaaatacat tcaacaactt ttattttcat ttattcaa
//
LOCUS       KCLJ01002541             584 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 283871cal ultra-conserved element locus
            uce-902, sequence.
ACCESSION   KCLJ01002541
VERSION     KCLJ01002541.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 584)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 584)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..584
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="283871cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>584
                     /note="ultra-conserved element locus uce-902"
BASE COUNT          169 a          127 c          104 g          184 t
ORIGIN      
        1 aacttctgat gagtttctct cctcctcaga attgggagct ggaaaagaac tttataaaat
       61 tctccacaac cagtcgagcg gaacctattt tctctcacaa tgcaattaac ggcaccaaca
      121 tttacaaaat atgattacaa gcactttggt taagtagagg aaagtatatt agatagcagc
      181 gaggggttga tcttaatgtg cattttttcg agagacttgc attttctttg tgcaaataaa
      241 gaggccctaa attctccata ggcactaaaa tcaatgcagt ggaaccatga taacaaacac
      301 aggctccact ttttgctaca tcccccaatt aattaagcct ttcacgggca tgtaattagg
      361 aacattagca agtcataaaa ttgccgtgag tctctaaatt atgtgctggc cctcagcaat
      421 ttgtttttaa ttccttttga agacaatggc actgcggggt cccatagatc ttcatagcag
      481 cctactgttt acttctttat ggctctatga agatctaact gttttctact gctcccagat
      541 gcacccgcac tattttcttg cgctttttca ttacctgagt taga
//
LOCUS       KCLJ01002542             482 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 283975cal ultra-conserved element locus
            uce-2486, sequence.
ACCESSION   KCLJ01002542
VERSION     KCLJ01002542.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 482)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 482)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..482
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="283975cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>482
                     /note="ultra-conserved element locus uce-2486"
BASE COUNT          184 a           73 c           85 g          140 t
ORIGIN      
        1 aggatgaagc tttggccaac attatatttg tttgaataat tcaatgaaac taagagaaag
       61 gagcataatc tgaaaattaa aaaatgactt gaaagtcagt ctccaaatgt ctggatttag
      121 actaatttgt aaagtaaaca agggaaaagt tttaaaaatc caggaaacat aaactgaagc
      181 tgaggccttt cacaagatca agacaagata gatgacaacc tgtaacggtg tatcttaggg
      241 ttccatgact tcagtttgga attcggatgc ttgtatttgc agtaaattaa acaaagctga
      301 acccatctag agaaaaaaca cagcaaatca aattaccttc attttgccta agtattataa
      361 atgatggagc ctctttctgt tgcatcatgc agagatttca aattatgtaa catctaaatc
      421 atcataaatt gttataactg aaaactcagt aatatgagca aagatcaaat tgctgtgctg
      481 tt
//
LOCUS       KCLJ01002543             568 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 284087cal ultra-conserved element locus
            uce-6896, sequence.
ACCESSION   KCLJ01002543
VERSION     KCLJ01002543.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 568)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 568)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..568
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="284087cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>568
                     /note="ultra-conserved element locus uce-6896"
BASE COUNT          158 a          110 c           91 g          209 t
ORIGIN      
        1 tgttggtatt tcactgttct taacccaagt tattccaaaa atctgaaagt ctaattttat
       61 gaggcctttc tttctctgcc ataaggacat aggacataga gtgaacaaga aagctttaag
      121 tgttactttc acatactctt tctccagatt gctgtatgaa gctgtacata atataaacac
      181 atattcttgt ctctagttag tcacattata gttaatgacc atatggtcat tatggtataa
      241 gatctactgt ctgttgtatt tatattcctc aagcatattg ttccttcaac ttcacagtgt
      301 gttaaactat ttcaaaggga atcctttccc tcttgtttct ggttgtccta tcaagtgtaa
      361 ccttggaccc ttatagagca attagaccag cctctatccc ctcctttgta atgaggtttc
      421 ttgcatttct gagtctataa ccctttagtc ttccctaatg ggacatcatt attctgaaag
      481 aaacaatgta aatgtaaatg aatattctca ttaacgagtc acagagaaac ctttagtggt
      541 agcgctgtgg taattctgct tgttattt
//
LOCUS       KCLJ01002544             664 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 284195cal ultra-conserved element locus
            uce-3072, sequence.
ACCESSION   KCLJ01002544
VERSION     KCLJ01002544.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 664)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 664)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..664
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="284195cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>664
                     /note="ultra-conserved element locus uce-3072"
BASE COUNT          233 a          125 c          125 g          181 t
ORIGIN      
        1 tggcgcacaa cccatttaag tcaaacagct atcatgtaaa agtggagatg agcaacaaag
       61 cacatccaag ggaagcaagt taagatctag gccctgaggt ttgaaggggc taaagaaacc
      121 gagccaaaga aattctaaaa aggcactttt ttgacttaaa aaaataagat tagaaactgg
      181 cttgtatgag cccaactgtg attaaaaaaa taaacctttt atagtttctt tttgttcttt
      241 gacttttcct tgcagagaaa gaggctatct tcacttaatc agagcaaaga aagagtggct
      301 gaggcagaag cagcatcatg tgggtgaagg tcaggccaat tttcacccat gtgatgctgc
      361 tttatcactc atggaacaaa gattaaggcc tttctttctt tatccttttg tgctttcccc
      421 cattacttta acagatctga acaaatccca ggcagttcat ccaaaagttc cttttagcta
      481 catttagttc agatcctcta aattccacat aagacttcat gctataccaa catgaagagg
      541 atataaaatc cacatgtgta gggagaaaaa tgttatagaa aaacacagaa atcattgcag
      601 aatatgatga catcaaaggt cttttcagtt gcaagaaaat aggcacatcc aggaatcaga
      661 atta
//
LOCUS       KCLJ01002545             528 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 284304cal ultra-conserved element locus
            uce-991, sequence.
ACCESSION   KCLJ01002545
VERSION     KCLJ01002545.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 528)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 528)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..528
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="284304cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>528
                     /note="ultra-conserved element locus uce-991"
BASE COUNT          166 a           97 c           98 g          167 t
ORIGIN      
        1 ttcagtcctt taatgagact gtgcatgaac acttgcagct ttgtaggcct tgttttaatc
       61 agagattgag aaacactcct gactgatagt cttcaggatc agatccagac agaaaataac
      121 atcctcaatt tggcctctga aggcgggttg agcaaatctt tgtgatgtat tggagtattt
      181 gctgagtgca agcacacgtg atatggttcc tgtttctgtc ggcaaataaa aatttttcac
      241 tcagcaggaa taatcagagc taactcgaga ggagaaataa caaaagctca acagccctta
      301 gcaactcagc atggcataga gggatttaag actttagcat tttatctcta tcagtatgaa
      361 aatgtatgag gaaatctgaa cgcaaataaa cacatttaac acattataaa ccacctattc
      421 tatgactctt gggttttttc cttttctagc ttccatctcc taaaataata aagctggttc
      481 attaatttgg atttaactaa aatcagtttg ttttgacaga gttacttt
//
LOCUS       KCLJ01002546             845 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 284412cal ultra-conserved element locus
            uce-725, sequence.
ACCESSION   KCLJ01002546
VERSION     KCLJ01002546.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 845)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 845)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..845
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="284412cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>845
                     /note="ultra-conserved element locus uce-725"
BASE COUNT          180 a          223 c          183 g          259 t
ORIGIN      
        1 cgcttctgct ccttcctcgc cgaaaccagc tgctggaaac tctgctgctg ctgctgtggc
       61 agcttttgct tgcgtttgtt ttctctgtaa ctttctcggg gactgacgga ctgcggagct
      121 atttctcttt cattttcatt gccccttaat gccacgctgg gggaatggct catacctcga
      181 attatattct caacccgggc gcgtttagct ctcaggtgct cgtcgcataa ccgatccaca
      241 tcaaactggc tcatagttgg cctgccaaaa ggggaaagac actcttgggg gctgtctctt
      301 gaagagttgc tgcatacatc ctcctgatgt acttctgagc ctgtactaga gagaccgctg
      361 gcttggaaac tgggctccgt gccaccattt ttgttcatgt tatttttcaa cagctgggaa
      421 attatggttg ctcctggaaa aggcatcatg gcatcttcat atgagttcgc cctcttcagc
      481 agcttgcgga gtacatttga cttttcccca tctgcatgct gcactactga atactcgaca
      541 tcctgctctg aaccttgggg attcatggca ctaaaaaacg ttgctcttgc ctttgcaaaa
      601 aatgcagatg ctgtccctac cgtccttttc actccaatgt caactcttct tctcttggtt
      661 tgcctgctta agagggctgt gctgtcatgg tcaggcatca ctggactgtt attgtgccat
      721 cttcaaaagc ttgtcagctg ggctcagctc aagaatcctg ggaccctggc caacagaaca
      781 aaaggactga tgaatcattt tctttaaatt tctccaaatt tcctgacctc aatcctgaat
      841 aaaat
//
LOCUS       KCLJ01002547             658 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 284524cal ultra-conserved element locus
            uce-7348, sequence.
ACCESSION   KCLJ01002547
VERSION     KCLJ01002547.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 658)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 658)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..658
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="284524cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>658
                     /note="ultra-conserved element locus uce-7348"
BASE COUNT          154 a          142 c          122 g          240 t
ORIGIN      
        1 tggcagatgt gcactgctgg gctgggagag gtgaaactca gcaggcaaag ctaggacctc
       61 ctttcatttc tactgacact ggatccaagc ccaggctctc cctgatgaat gaccatgctt
      121 tcattagcag actcagtttg ttcttcctga tggaaactga cacttctccc actgtcttcc
      181 tcttttattg gctttgttgg cctacctcag ttctgacttt tgttaatttt tctttagtac
      241 attcaactgg actgtcccat tcctgagctg gctggcaatt gttgccctct ctgtgttcac
      301 cgtcatcctg tatttcattc cactgagata cattgtcctt gtctggggta agtaaagccc
      361 ttttaaactg tctttttaat ggatgactta cactgttttt ggtatttatg gtcatgaagc
      421 taccctatac tggaattagg catgttagtt aacaatactt aggcccactt tcaaaatgca
      481 tttttcttgg ctgacatttt agacttaatc atactataaa catttagcca tgaggattct
      541 tcatatatca aagtgtagct ttgtctagat ttattttcac cacttaatca gaggcatttc
      601 aatctatata gtgcatttag gacaatacgt tttttactgc agtatcttgt gtaagtgt
//
LOCUS       KCLJ01002548             675 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 284632cal ultra-conserved element locus
            uce-5661, sequence.
ACCESSION   KCLJ01002548
VERSION     KCLJ01002548.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 675)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 675)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..675
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="284632cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>675
                     /note="ultra-conserved element locus uce-5661"
BASE COUNT          214 a          151 c          114 g          196 t
ORIGIN      
        1 attcatctcc tgaaactaaa agccaagctc ataaagcaaa aacccacaca agctaaaacc
       61 aatcagtagc ttccccaaat ccctgcaaag tcaaaccatt cagtgccacg ctgctctgcc
      121 aataatagta acaagtaaca ctacactcgg gctgtaattt ttcatatcca ctgcgctgtt
      181 gtcatatgat ttactgtgct agcactgaga gccattgccc aagccctgtc tctgcactcc
      241 tcctgattta cttaaatctt tttactttta tcagccacag ggaatgggga cactttaaca
      301 actgacaatt tgaacagaaa atacagagaa aagctgtgta aagcaagtgg ctgagattat
      361 agctgttgac ttctaatatt atttgacaga tgagactgct gcaattatcc tctgctcatg
      421 ggttccatta cgggaacaag aagcacacaa aataagggca atttcccaaa caatatatag
      481 gtccacttaa ctttgtcaag agccatttct gcaagtgaag tcctccctgg ttaaagatac
      541 aaggataatg tgttggcaac ttcacatgag catttagtgc attccacatt aactgcattt
      601 tcagttgttc ttttcctgct ctgtttgaac caaataggat attatttcta aaggtatttg
      661 tttagagaat aacat
//
LOCUS       KCLJ01002549             417 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 284742cal ultra-conserved element locus
            uce-873, sequence.
ACCESSION   KCLJ01002549
VERSION     KCLJ01002549.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 417)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 417)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..417
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="284742cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>417
                     /note="ultra-conserved element locus uce-873"
BASE COUNT          141 a           62 c           80 g          134 t
ORIGIN      
        1 tgttttgtgt gacaggaaga gccacctttt taagagataa gtacaccaca atctggaaat
       61 cctattaata acattagagt cctgaacttt aatgtattaa tgaatggaca tgcagccatg
      121 ctgtaatcat ggatttcagc attgcctttg atgcttcatt ggtcacaaag ctcttacaaa
      181 atgtttgaag tgtctggctg tgtaataatg atttataatt ctcttgaacc aaagcaaaat
      241 ttgctagtaa aaatcatttt tgaaataaaa aataaattgt gactggaggg tctgggtttg
      301 tttcaaaaag agatcaccca caagcagcaa attatttaaa aagccactgg ttctagtgtt
      361 ttgagatagg gagcgtacaa ctcagaattt caaagtagtg ttaattaaga tcagttt
//
LOCUS       KCLJ01002550             765 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 284842cal ultra-conserved element locus
            uce-6121, sequence.
ACCESSION   KCLJ01002550
VERSION     KCLJ01002550.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 765)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 765)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..765
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="284842cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>765
                     /note="ultra-conserved element locus uce-6121"
BASE COUNT          255 a          128 c          138 g          244 t
ORIGIN      
        1 tagctacatt gcagtaagca aacagtaaag tcttaaatga tcaatacttg acaagaggca
       61 tgtcagaaac ttcatgtata ggtcaggcac acacaaagtt tttcaagtaa atcgactgac
      121 ttctggacaa ggcacaaaaa atgccacttt ttatctctca gttgatattt ttctcacaga
      181 gtaaaaaatc accccctcag agatttgatc gaaaagatag tcactcctga cacaagttta
      241 aaatcaagtg gaaatttttg tcactacctt aatctctgat ttgtagaagg ttgtgctttg
      301 ggatatttgg tatgtctgag aattgccacc aaagagccct tctgttcttt aatcgctgca
      361 ctaaatctta acaaacgtga gcatgaaaac tattgtgctg tacttgtgag gcatatatca
      421 aagttatatt tttaaagctt ggaaaggcag ttgaatcatg catgctcttt atggagctct
      481 gatcaggctg ataaaggcag ttcagcttca ataaacgctt tttaagtgaa tgttttggaa
      541 agcgaagagg aaattcaaag ctcaaactgt tgcctaactg ttcccatagc actttgatca
      601 ctttgctgct gacattttgt taaaaatgtc ttgtttttat taaaatgttg gaaaccgggg
      661 atttagaaat ttaagtgtag tcactgaaaa aataatatac agtaaaactg agtgacataa
      721 cttattaagt actttgtaca catttcttaa aaaagaaaac ttttt
//
LOCUS       KCLJ01002551             692 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 284952cal ultra-conserved element locus
            uce-431, sequence.
ACCESSION   KCLJ01002551
VERSION     KCLJ01002551.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 692)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 692)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..692
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="284952cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>692
                     /note="ultra-conserved element locus uce-431"
BASE COUNT          167 a          136 c          152 g          237 t
ORIGIN      
        1 cttgccactc tccagtttaa actgccattt tcctcagcag tgaactcata aaatccctga
       61 ggatagcttg tactttctcc cagccctttt acatctgtgt taacaaaact aaatactaaa
      121 tcttgaattt gagggtgttt attgcactgc ctaaaagttg cattatttcc aggtctaaca
      181 cactcttttc ttttctcttt cagtcttggt ctttgtaatg ggcaaagaag gggtccatgg
      241 aggcggattg aataagaagg catactcaat ggcaaaatac ttgagagact ctgggttcta
      301 gttgttaggc agactgttaa gtattagggg aagattgcta ttaaattttc ctggcggtga
      361 gctttaaacc ttacattctg gaaactttac tagcaatgca gggtgatggg gtatgaacct
      421 gtgtctcctt tgtatccctt tgttggtggg gaaaggtgtt tttttttttt ccctttaatt
      481 cttttcattt ctgttttgtt tccttgtgta ctccagcatt ggttatagtc atgggaaagg
      541 aaggtgtcca tggagggaca ctcaacaaga aagcatatga actggcttta tacctgagga
      601 ggtctgatgt ctgagcagcc tctccccata gctgtctgca gcacttgtgc tcagtgctac
      661 cagaccgtag atggtagttt gtatttaccc at
//
LOCUS       KCLJ01002552             684 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 285064cal ultra-conserved element locus
            uce-4769, sequence.
ACCESSION   KCLJ01002552
VERSION     KCLJ01002552.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 684)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 684)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..684
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="285064cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>684
                     /note="ultra-conserved element locus uce-4769"
BASE COUNT          215 a          106 c          121 g          242 t
ORIGIN      
        1 tttacagcat agatactgag tagttttaac tgtctttatc tttcatatac atatagacca
       61 attgaagcat gaacgtggat tgtatttaaa catatacaaa gaagtgacag ctattcatgg
      121 ttcaagtatt aagcagatca tactaccagg ttttcaaagg attttagaca caattatctc
      181 aagctcccac aaactaattt tggcaacagc catgataata ggtcaccatg ttgtgttctg
      241 tttgaaatat ttttttgtaa atgtctgcac tgaagatttc tttttgtttg cctttatgta
      301 aattttttac gtagctattt ttatacactg taaggctttg ttctgggagt tgctgttaat
      361 ctgatgtata gttttatttc agttgttttt atgacaccct ttgagcaggt acatgtctga
      421 ttctggttgt aatcagtgaa gcctctgctt tgtagcaagt accttaagat tgtcttaaag
      481 aaaatgtcaa actccttttt cattctttga aatcatggta aagcgggtga cagctgtgac
      541 aagaataaac taaattgtta atgaaagtga acatttagct aaacaagcta gataaagagc
      601 ttccctgaag aagtgtgggt tgagtaaaaa acactatgaa aaattcctag cctacataaa
      661 aaatcctttt cttctagagc aaga
//
LOCUS       KCLJ01002553             683 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 285174cal ultra-conserved element locus
            uce-453, sequence.
ACCESSION   KCLJ01002553
VERSION     KCLJ01002553.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 683)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 683)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..683
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="285174cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>683
                     /note="ultra-conserved element locus uce-453"
BASE COUNT          176 a          142 c          117 g          248 t
ORIGIN      
        1 tttcttggtg tcttctctct ttagactgct agcaagctct tattcaccac agcatgttat
       61 ggaacttgtt ttggaaagat ttgaatgctg tatacagtct gaaagcatat ttaaagctgt
      121 tgctttcgat ttttctttta attccttgat accactgcta atgtaaagga catggattga
      181 agagaggatc ttcttttcct aggcaatgtg ttattgatga gctggcattt gccctgtggc
      241 tctcccccag gattgcttac atctattact cacacacatc gattggttaa tttgataatt
      301 ctatcaccaa tcagcttgtg tctgaccttt tgccatggca atgatggcag agtcttcatt
      361 tttacatcgc atacctgcta gattgacctt tctgaggaga atgtcaagac atcccttgat
      421 cttaacctgt cactaaattt gttagaatta cactgtccct taaccttgat ctgttgtatt
      481 tgtaatgttc aggatatgca atttgtgcag aaatattctt acataactta tgccagtcaa
      541 agtataacac ttccataatt aaaaattagc ttcccaatag gaaagtgttc tattttcctt
      601 ccattcatct gtgtagctct cctgcatcat tagctagtcc cttagaagta cttccccttt
      661 ctgtgaccac tgaaattaga gga
//
LOCUS       KCLJ01002554             373 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 285280cal ultra-conserved element locus
            uce-6072, sequence.
ACCESSION   KCLJ01002554
VERSION     KCLJ01002554.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 373)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 373)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..373
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="285280cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>373
                     /note="ultra-conserved element locus uce-6072"
BASE COUNT          120 a           57 c           66 g          130 t
ORIGIN      
        1 atttacattg ttttagagca gatggctgta ttaacacttg tcttttagtt ttgaattctg
       61 tcagaaatcc tgaggtgaaa cattcacagc cattggtgct ttttcagcac attaagcttt
      121 tatgaaagta aaagttaatt acatatgatg actaaactcc agggatcata attagctgaa
      181 ctgaatggct gcacatcagt aattaaattt catttcagtt cattgtactg aaaaacccta
      241 ccctttaaaa gattggaatc tgttattttc ttcagaaaac ctgaaggagc actatacaaa
      301 gtatgctgag tggaaaccat aattatgggt tagtttcaac atttattttt tcagagtttg
      361 tctatggaga aga
//
LOCUS       KCLJ01002555             761 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 285383cal ultra-conserved element locus
            uce-583, sequence.
ACCESSION   KCLJ01002555
VERSION     KCLJ01002555.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 761)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 761)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..761
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="285383cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>761
                     /note="ultra-conserved element locus uce-583"
BASE COUNT          224 a          138 c          141 g          258 t
ORIGIN      
        1 tttttgaaat gcaccaaatg cttttcttct gtccctgaat tgtgttgtgg ctcctaaatt
       61 aggtaggcac atctgttgat ttaaaacatg caatctgcac gtggaaaaaa aattatattt
      121 ctaattttga caaatagtta tgttttgttc tctctgccgt gagttagggc acactatcgt
      181 tctttgtttc tagcaagtaa ctgaagtatt attaagattt tctttccatt tcttagaact
      241 ccccagggtc tatagttttc tttgcagaaa cagttgccat taaatatgct gtatgtcaat
      301 gcagcagtga ggtggttaat tttgactgaa tattatgcta tataaccact tggcatttaa
      361 cttgaaaaat gactttctgc ttcacctgtc agcagcccag ttctcatcaa ataagtgagt
      421 gagaaaaatt tttaaatttc aatttcctga tgctattaga cactacttct tccatactta
      481 aacagtttag cagtgcatgt acatgttttg gtattcatgc catgcatcac actacatgct
      541 attacaatag cttttttgtt taaagggtaa agagatgcat ggatctttat cttggggtta
      601 ggaaaatgta ttgcaggaac atggccaatc aggtttctga ataactttgt aacatagtac
      661 cataaccctg gtgcagtgca aggaatttaa aatacgaggt gcctacgagt ccacagaaag
      721 aaaggattct agatggagac accagcacag caatcctgcc c
//
LOCUS       KCLJ01002556             403 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 285495cal ultra-conserved element locus
            uce-3921, sequence.
ACCESSION   KCLJ01002556
VERSION     KCLJ01002556.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 403)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 403)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..403
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="285495cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>403
                     /note="ultra-conserved element locus uce-3921"
BASE COUNT          112 a           77 c          120 g           94 t
ORIGIN      
        1 tcatagactg tgatccaaga gatacatttg tagaggaatg agggaaccat atttctatag
       61 cataaaaaat gaaataaatg agctggcttg caacactagg tggcagaggt gggatctgtt
      121 ctgctctgag cgctgtccta taaggcattg cttgtttaag tacagtcgca tttagttgga
      181 gctgcaggag agagacagag agattctctg tgtttacagc cagcccaggc tacggtggag
      241 catccaacct gtccagcact tgaaggggag agtgagaggt tatttgggaa tctggccacc
      301 gcgggtcagc ttgcactgcg actggattgt cagagctggc aaagcagagc ccagagggac
      361 tgaagggaga cacgaatccc attttctttg agaggagcga aga
//
LOCUS       KCLJ01002557             238 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 285607cal ultra-conserved element locus
            uce-4765, sequence.
ACCESSION   KCLJ01002557
VERSION     KCLJ01002557.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 238)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 238)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..238
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="285607cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>238
                     /note="ultra-conserved element locus uce-4765"
BASE COUNT           77 a           52 c           45 g           64 t
ORIGIN      
        1 aagttcaaga taaagataca tgaacttcat caagtttaag caaactgtct ttgtagtaat
       61 taccaaagca tgcttttttg tcatagacca cagtgatgga tcagtgaaga gttcaagtaa
      121 aatacgcaag ctttacccca ttacgttcgt agcaaacact ccctgttgga ctttgacccg
      181 gggcagctgg agatttactc tctaaattgt gaggaacagc acacacaacc taccagtc
//
LOCUS       KCLJ01002558             803 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 285702cal ultra-conserved element locus
            uce-2082, sequence.
ACCESSION   KCLJ01002558
VERSION     KCLJ01002558.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 803)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 803)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..803
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="285702cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>803
                     /note="ultra-conserved element locus uce-2082"
BASE COUNT          250 a          157 c          129 g          267 t
ORIGIN      
        1 acttaaatag cgcactttaa aacaaaaaaa actccaattg gcttttcata catccaccct
       61 ccccaaaaat aacgcacttg aaaaacccaa atgatatgaa aaggcttcaa ggcctctttt
      121 ctccttttca cagcactttt ttttatttct gtttgcagta atctgccttt cactttctca
      181 ttgctacaga acaaacgagg aggctcagca ctttgaaaag ggggctcaat gtgtaatggg
      241 tccactagaa ttaatttagt tgcaccaaat ccattgagca gtgaggtttt tttctcttct
      301 caaatcattt tgagtcggat gcagccccca gcctttgtaa ttctagtaaa gcacttaaag
      361 tgcacagtag gtgttcatca ggaccatctg gtcaaaagca aaacaagctg ctgattttgc
      421 ctttgaatag aatgaagcaa gtgtgaatta gtctcttcaa ttagcactat tacaacctgt
      481 caagtgcata ttgtaaaaca ggattattac agtattggtc accagtgcaa ttatttactc
      541 tctgcctttt cttgcatata aaaatgtcca tgtttactag tttttaataa ctgaagatcg
      601 tttctttaat gatatgcacg tccaaaccca ccaaaatcaa attacaggtt atgaaacata
      661 ttttgtcagg aatatattag gtttcataat taagtgagaa gtgtgccctt tctttatctc
      721 ttattgctgt ttctgttgca gaaaaagaaa atttttcaat gggatatctt aaacagatct
      781 cttcagtcag gtattaagat att
//
LOCUS       KCLJ01002559             547 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 285815cal ultra-conserved element locus
            uce-6252, sequence.
ACCESSION   KCLJ01002559
VERSION     KCLJ01002559.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 547)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 547)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..547
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="285815cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>547
                     /note="ultra-conserved element locus uce-6252"
BASE COUNT          137 a          118 c          114 g          178 t
ORIGIN      
        1 ttttacatgt ctgaatggag catgggaaag cgatgtgtgc tggcaagaga ggatttcttg
       61 tgaccaagtc tcatgagatc accctccttt tccctcccag gacctggaat ttccctctcc
      121 ctttcacccc tggtgtgctg ccacagtctt ttcctctgct ttctaatgtg attattctca
      181 ctcctgtttg cacacataga tggagctcaa tggatcccta atagcatcat ttacttaatt
      241 aacatgcaat tagcttaatg aatattttaa cctcattatg tagttactaa tttttatctg
      301 ttgtggataa gtctagtgcc cagctctgga ctgaaggaca aaccaaatta gtccagttct
      361 ccaattatgt tcaaggggtt catacagtcc tttttacaca tcacacggat gatggaaggg
      421 ctggtatgga agcagaacat tttttcttca tcttcccctg acttagagat gagagagaag
      481 ctgagagtgg tgatattgaa tccttttggc tgacttgatg aaggctctaa ggctttcctg
      541 gcagaga
//
LOCUS       KCLJ01002560             577 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 285926cal ultra-conserved element locus
            uce-5456, sequence.
ACCESSION   KCLJ01002560
VERSION     KCLJ01002560.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 577)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 577)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..577
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="285926cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>577
                     /note="ultra-conserved element locus uce-5456"
BASE COUNT          179 a          108 c          120 g          170 t
ORIGIN      
        1 atctgtcctg aaatgtaatg aaaaacagaa acttgcagtg cagaattttg aatttgtaat
       61 tctatggctt tgtttcttat tatttagttt gagctcacac aacagaactc ttgcattgaa
      121 atattttctc attttaagga attaatggct ctccaccagc ccttcaacat gtaaaatgag
      181 taggttactt gtgtccagta catccaaaaa gagccaggat aaaataaaca taaggagttg
      241 gatatcttgg aaaaaatctg tcatgggttt gggttaatca tctccagaag aaattcaact
      301 tgatgcctga aatgtaagac ttcttggaga aagcagtaaa gcctgaggca gtgttgatct
      361 gaaggagtgc tctccatggg tcagagctgc tctgctggca gagtgcaaac ccagttcaca
      421 acagcggtgc gctgaaaact tgtaaaggac tgcaggggcc gtgcagtgca cgcactcaag
      481 cttcagttac atagttctac tggtccagtt tcttattata aaataaaact gaaaaataaa
      541 atctgtgcct aattttctag cctcctgtct gtcaatg
//
LOCUS       KCLJ01002561             755 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 286034cal ultra-conserved element locus
            uce-816, sequence.
ACCESSION   KCLJ01002561
VERSION     KCLJ01002561.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 755)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 755)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..755
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="286034cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>755
                     /note="ultra-conserved element locus uce-816"
BASE COUNT          251 a          127 c          121 g          256 t
ORIGIN      
        1 ccaagttact ccccattcct ctttaaacaa ataaggttag caaccctttt gccattcaca
       61 attcaacatt catactaaat taatttttcc aaaagtaatt caaataaaag ctttgctgct
      121 gctacccttt tcagagctgc aagattgaat aaggcatctg aataaaattg tgtattacag
      181 ccttctttaa tatttaagca tgacattcat tgatttgttt cttgttttct gcaaaccttg
      241 acaacatgat aaaataaatc ataagaagaa aatatagtgg taacatcttt tatggacttc
      301 acatagtcat caatctcaag ctgtgagtga attatcagtg cagcaaaaag atctatgttt
      361 taagagctcc aatagcacac tagctagagg tttttcacaa gcaaactcaa ggcgagtgac
      421 tgataagcat cattattgtt ttctgagagt ctggtttata gtgtgttgtg gaggtgttgg
      481 catatatgtt tcagaaggaa aggtttgatc aattctaagt agacatctac taacatataa
      541 aaaatataac aagggttcct gctgagcagt attaaagtac ctattgcacc atgtcagcat
      601 gacaggcccc atgttgtgtt ttcgattata tttaatatag aattaacctt tcttaatgga
      661 acatattgtg catgcaacgg gagtgaaaaa tatttacaaa tatcatcctt atttaggttt
      721 taaggaatac tttttttcaa tttataaaac ttctc
//
LOCUS       KCLJ01002562             444 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 286146cal ultra-conserved element locus
            uce-1879, sequence.
ACCESSION   KCLJ01002562
VERSION     KCLJ01002562.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 444)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 444)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..444
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="286146cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>444
                     /note="ultra-conserved element locus uce-1879"
BASE COUNT          180 a           56 c           94 g          114 t
ORIGIN      
        1 gaaactttgg ctgtgctccc tcttttcaaa atgcaactat gtaaaggtca cagaggagga
       61 gatgaaacta ggagttgtaa taaggaagga gaaataaaaa ataatgacag aaataaattg
      121 tcataagagg ggatacagtt atgatttatt gtgatattct acaaatttgg aggtgattaa
      181 aagccaccta aaattcacat taacaagtca cataaaaatg gaattaaact agtgggcata
      241 atgtggcagg gtataaagaa aaatcatgac agaaataaat tgacagaaga atgatactat
      301 tcaagtttta ctctgtcgcg tcacactgac aggagactat ttcagagttg tggttgagtt
      361 tcattaaagg cccacattaa gaatctcata aaagtgagaa gaaattagtg accataatgt
      421 ggcagaggaa ataaagaaac aata
//
LOCUS       KCLJ01002563             779 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 286241cal ultra-conserved element locus
            uce-1138, sequence.
ACCESSION   KCLJ01002563
VERSION     KCLJ01002563.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 779)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 779)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..779
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="286241cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>779
                     /note="ultra-conserved element locus uce-1138"
BASE COUNT          239 a          157 c          154 g          229 t
ORIGIN      
        1 gctgagcagt tgttcttgag ccgggcttta aatgaagcat gcagaatttt taatttggga
       61 agaagatgat ggagagtgag cttgaaataa ttcctgagag aggaggtggg ctatagtgga
      121 aaacacatca acaaacaaac aaaatctttc caaatccctc cagtcagcca tctccacctg
      181 ctatggtgtc tgtccctgtc ctgcactgta ctgctggagc aggatgactt tggtatctgc
      241 tacatgcaat accatttgga agtttcaggt ttggctacta tatgattgca gtttcagtag
      301 taaagggatt attctgagag gcatacaaat gtgattgtct cccagcagat ggtgcgcact
      361 gcttcacctt tgagaaaagt taattaagcc aagcatattg tgcccataga gaggaaaatg
      421 tagatgaata ttgagcaatc aaactcagtg tctccttttt tcatgccttt gcaatgggac
      481 acagaatccc attgaaaaag aattatgtac agaatcaaat taattcacat ccaactttac
      541 tctcttccca cgttttaaca ggggtgcaca ccaggccctt cagaagtttt gtccacaatc
      601 aatgggccac actgctgtgt ccactaaatt aaatgaatca gtgcagaaaa atctcttgtg
      661 agatattaaa agggtgaaag actgtttaat tcaaatcctt ccgtagtctt ttcacagccc
      721 cttttacata gtacagtata aattattaac taactccttt tatctcagat caaattaca
//
LOCUS       KCLJ01002564             332 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 286351cal ultra-conserved element locus
            uce-2124, sequence.
ACCESSION   KCLJ01002564
VERSION     KCLJ01002564.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 332)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 332)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..332
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="286351cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>332
                     /note="ultra-conserved element locus uce-2124"
BASE COUNT          119 a           63 c           47 g          103 t
ORIGIN      
        1 agaccatgtc ttcaaatgca ggagaaaacc ccaaacccat caacaaccaa aaaagcattt
       61 acaggttatt ccctaaccat ggctagatgt attgcatcat aaaatgtcaa catcaaaaca
      121 atatagaaaa aataattaca gacagtgtta gtgttgtaag ctgataagga ccagatggtc
      181 ttttgtattt atggtttgcc ttgtgcatac aaatgctttt gggatctaat tagccttcta
      241 caaaactcaa actgggtaat tactatcatt atcccctttt caaataaatc tgaagtctaa
      301 actgcaatta agttttttat cttacaattc at
//
LOCUS       KCLJ01002565             667 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 286455cal ultra-conserved element locus
            uce-1217, sequence.
ACCESSION   KCLJ01002565
VERSION     KCLJ01002565.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 667)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 667)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..667
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="286455cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>667
                     /note="ultra-conserved element locus uce-1217"
BASE COUNT          198 a          113 c          156 g          200 t
ORIGIN      
        1 ccacctggag gaattttcct ggctgggaac gtggtgctgc tgggaatgag caagctccaa
       61 aagtaatact gacagccttc agaattatga tacactggag ctgcggcgta attctttgtt
      121 gaagaagtta aaaatgttaa ggcttattgt tattccgagt tgataatctc tgccttgctt
      181 taataatttt tcctcatgcc tggatagcct gcgagttgca caataatcac tcacacagct
      241 ttgtaatcaa tgcccaaagt aataggattc cgctggccaa cggcaattaa taaatttgtg
      301 tcttttttaa aacactagca agtcgggcct gaaatacgac tgactggctt tcctcatttg
      361 catatttatt gcagtggaaa aattcttgcc gaatgattga tgttgagcct gcctcttgaa
      421 ttccaaacag cacattatta tgaaatgaaa aatgccggcc atacagttga ttaaagttga
      481 agacagtgga atcggtgttt tttaagattg tgggagaatt aaaggcatat tttaatagat
      541 gttgacaaga agtgaactaa caaaagcaaa gcaaaggatt tgcttgaaaa gatttaatca
      601 aacgtgtttg gtgggggatt aattgctggg gatgacgagt gcaagtggct gctgctgcct
      661 gtgagtg
//
LOCUS       KCLJ01002566             642 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 286568cal ultra-conserved element locus
            uce-703, sequence.
ACCESSION   KCLJ01002566
VERSION     KCLJ01002566.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 642)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 642)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..642
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="286568cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>642
                     /note="ultra-conserved element locus uce-703"
BASE COUNT          186 a          132 c          125 g          199 t
ORIGIN      
        1 tttggctggg aaaatcgtga tgtatacact gtataaaagt gccaaaataa gaaatgtgta
       61 gactgcagcg tctctggtag taaatctttt ttgtaatcct aacttcatat ttccattgaa
      121 ttgttcctct cgagctgtgc agacagttga agtatttgag tgtagtcaca tatgctttgg
      181 tgctgctaac agccctaaag ttggtaatcc tgaggcacaa acggggccag ggatgactcc
      241 tcaggctgca aaatattaca gcacacctta tatagtgctt gctttcgaaa tttcctttgc
      301 actttgttta ctatatattc caatagtgta atattaaaca aaaacagtgt gtcctgtgcc
      361 agaatgattg attactacac cgtggcaagg tcacctccta ggaacaggct gagtgcagta
      421 agggctgtct gactcataca gttaacacta tatccgcatt gtatgaatgt caccagcaat
      481 ccagtgattt attgcttgga aggctctgtt caattttttc tgcctgacca aattgcacat
      541 tttctagaaa aagaagcaaa aatatttcag cacatggatt accccaagtc ctcatttctc
      601 ccactaggtt caacgagtct tttcaaagat gctgatcatc aa
//
LOCUS       KCLJ01002567             666 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 286678cal ultra-conserved element locus
            uce-2196, sequence.
ACCESSION   KCLJ01002567
VERSION     KCLJ01002567.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 666)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 666)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..666
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="286678cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>666
                     /note="ultra-conserved element locus uce-2196"
BASE COUNT          235 a          112 c          119 g          200 t
ORIGIN      
        1 tcctttaaga tatggctggc aactctacaa gaaatagatt ttcctaacaa acaaaggttt
       61 ctaataactt gtgagcgaaa ttaactgaca gttctttgtt aaatcaaaaa gtgattactt
      121 gaatggtcat aatcatgcaa ttatctcatc ttcacctttt tgaagactgt atctatatct
      181 actactatat tgggagtgag tagggggagc tctaatgctg aacctgtgat gtattcataa
      241 atcagtactt tcagagcctg tcatgggctc cataatgagg gtcattattc aggcagagtg
      301 tcaaaactac tatcaaagga ccttctcaga atcacaatca ttctgtttct tgttaaataa
      361 gcaatgtagt acacaaaaat ggcaaacaag aagcaggtca atttgataca gtatgagggc
      421 acagagacct ctagagtaat ttaccctgtg ggaattctga tggtttgtga gataaattat
      481 atacaccctc agaaatgatt aatggtaata aaatcccagg aatattttca aaaaaagtcc
      541 atatgtacat atcttcagta acaaagaaga cattttctaa agcggaacac ttaaagaaaa
      601 ttattattag aactgcaagt agctctcggg aaagctacta aatcttatta caaagttggc
      661 agcatt
//
LOCUS       KCLJ01002568             790 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 286786cal ultra-conserved element locus
            uce-2488, sequence.
ACCESSION   KCLJ01002568
VERSION     KCLJ01002568.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 790)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 790)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..790
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="286786cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>790
                     /note="ultra-conserved element locus uce-2488"
BASE COUNT          250 a          175 c          155 g          210 t
ORIGIN      
        1 aaaagcatct cctacttatt aaattgtaat tctgctttta gtattgaacc ggaatccaca
       61 gacaaagaaa taagcacctg aatacccctt tgcctctaaa atatgctcaa ttgaaaagct
      121 tgaaatatgg ttaaataaat aaatgaacag aagaagtttt tggccattct cacaagagcc
      181 agaatccatt tcacatagat attacaagga ttaaacagaa agggaaactt acagctttag
      241 acacactttg tgtctcaata ccaactgcag caccagcttc tctgtaagga ttatcaaggc
      301 tacagcccca tgcagctgtc agtccctggg gctgtaattc agctatcctg ctctcactct
      361 atccatcaca tttacacaaa tccccaaggt ggactgcctt ctaaatgtct ttaccttgtg
      421 cattatcctg gggcttaaca atccaatatt ggtgcagcca aggataatta ctctccattg
      481 atgataaaac accctgaatc ctgtcaggca tggcaatttg catcttacag tgctgaggat
      541 caatagatac aacaaaggag tgaaacctga ttagatactg ctgcctctca atggaaaggg
      601 aagagctgat tgttttgcag ggttgaagtc ctggttaaaa gggaaacaga ggtctcccat
      661 tacaacacag tccccaagcc tgctgttcac ctagaaactg ctgcagggag tttgagactc
      721 caggagaaag tagttgaatg aacaaccagg tcttacagac tgagagttat ttacttgggc
      781 cagcgtggct
//
LOCUS       KCLJ01002569             576 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 286898cal ultra-conserved element locus
            uce-1446, sequence.
ACCESSION   KCLJ01002569
VERSION     KCLJ01002569.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 576)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 576)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..576
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="286898cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>576
                     /note="ultra-conserved element locus uce-1446"
BASE COUNT          164 a          122 c           91 g          199 t
ORIGIN      
        1 ccccaaagag agctggattg caaaattgcc cataaaatta tagggagtga gtctgatagg
       61 aaatgttatg aattttaacc tctggcttct atgcagagac caccttcatg tgatctggtt
      121 ccttagtgga attattcctc tgtgtatctt tatatcattt tcttagcttc taaccactgt
      181 atttctgcac agtttcgtat ctgctagccc cagcatttcc agcctatgaa aacctcataa
      241 atctacttca tttttctaat aagacatgaa agtccttaat tggccttaat gaaatgcact
      301 taaagggcaa taaacgtgtt taagcccctc tttcagggtg agctacagta ctctcactct
      361 gctctgtttt agcctttgtg gtaattaatc acttattcat atgtggcaca tcagtaacaa
      421 gatcaagcaa ctactgcaca attgcatgat aataagctgc tcatatatgt gtcaagattt
      481 agcaatcctt tttaaagcct aatttaaact cattttacaa ctaagcaggc tgcttctctg
      541 aagtatttct acccagtatc ttttttacat attgct
//
LOCUS       KCLJ01002570             517 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 287006cal ultra-conserved element locus
            uce-4652, sequence.
ACCESSION   KCLJ01002570
VERSION     KCLJ01002570.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 517)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 517)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..517
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="287006cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>517
                     /note="ultra-conserved element locus uce-4652"
BASE COUNT          180 a          100 c           86 g          151 t
ORIGIN      
        1 aaaaatattt tgtgactcca acacacttaa ataaaaataa tctgctctaa ctggagtttc
       61 atatcagaaa ccagcaaaca gatttccatc taaactattt tgtcaacagc atggtggtat
      121 ccttgctaac cttatatggc accagtgaat aattagatac acaggggtgt gactccaatt
      181 gaaggtgttg gcattgtagc gctctgtgaa aatattaact atgaggttaa ctccaatttt
      241 ctcttcttta attaaatgca catggtacta atgaggtaac ctacggttcc ttgatagcac
      301 taattagcta agaggagagc acactctcac actgcaattt aaacctaaaa ataaggttga
      361 aatatgctaa ttgcaggcaa tttaaaacag tacaagttgt agaactagtc ataataagga
      421 aaactgactg ctttacagct ctgcagctgt aactttggtt aaaatcaaaa caccccacat
      481 ttttagaaca atttgggaaa atgtccacca gcctcct
//
LOCUS       KCLJ01002571             638 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 287116cal ultra-conserved element locus
            uce-899, sequence.
ACCESSION   KCLJ01002571
VERSION     KCLJ01002571.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 638)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 638)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..638
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="287116cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>638
                     /note="ultra-conserved element locus uce-899"
BASE COUNT          210 a          114 c          125 g          189 t
ORIGIN      
        1 ggaactgccc catggcagca actccaggga ttcctatctc tctcagaatg gagcaaaaca
       61 acgcgaatag accttctgca taatgaaaaa ctgttaatgg ccatctttag taacgtagca
      121 acagccaaac ccttgaaaag aggaagtttt cattgatttc attttaaaca ttgaaatttg
      181 gtataatgta gtgtctgaaa taagttttga aaggaagctg atgattaaga agaaatgcag
      241 tgggcattta ataaatggag gagcctcaag ataattaact ggcatgcata aagattcatg
      301 ctttatacca aaattttaat tttgcacata aatgtgcctg atgtaggcag catttaatca
      361 cctagctgac aggagtaact actttcattt aaccttgact gaagatcatg aattctaaca
      421 ggtttaattg gatacatcat ttaacagaat gaacagagca aatttttctc aattcatagg
      481 ttctgattga catgcaccag caataaggcg ttgcacaatt aaagctgatc tgtattcctg
      541 gcctgggcag caattgccat agtgatgtga cactgtttga tcactgtggc actgaaacta
      601 tactgaattt ccccttgttt tgaaaagggc aatgcttt
//
LOCUS       KCLJ01002572             737 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 287224cal ultra-conserved element locus
            uce-4486, sequence.
ACCESSION   KCLJ01002572
VERSION     KCLJ01002572.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 737)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 737)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..737
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="287224cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>737
                     /note="ultra-conserved element locus uce-4486"
BASE COUNT          189 a          143 c          176 g          229 t
ORIGIN      
        1 tgttgttatt ttctgtaggc agttcttgaa ttcctgaatg attaagtaaa ggtttcttga
       61 atgttaaaaa atcaaactct ctgtcacagg gaatgtggtg cagaactgct accatggacc
      121 tctggagggt gagaggggag ctgtttcggc aggcttgggt ttctctctgt ttatgtgaaa
      181 cggacattgg catatcttgc ctggactttt cctgtggggt tcatatggta ggcagggtgg
      241 ggaatagttg tctgagccat accaaggtca gcctgctaga gctgacagtt tctgtctctg
      301 tacaaagaaa agaatcaata cttttggact acggctgtgc cctcagtgta aaacaacaaa
      361 catgcagcgt ctgacatgtt tctaggtgat ttgtggcaga acctcttgtc tgatctgtat
      421 ccaggagctg ctgtgttact tctctgtgct tttcttctct ctctcgagct ctgtgatgtc
      481 taatacttta ctcaggtaca gaggcgtgtg ttctacccta cagctacttg tcactcaata
      541 aatcacacct acaagcacag tctgcacata gtgatctggg ctttaacaaa ggatcagagg
      601 gacaaagtgc aggcaagata ctgtaattat aacaaaaata aaacattcag ggggttgtag
      661 caaaggcatg ggctcccagg cactaataaa atgttattag aattgcagtt ttgtttcagt
      721 ccttcaggtt tcatttt
//
LOCUS       KCLJ01002573             443 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 287335cal ultra-conserved element locus
            uce-5272, sequence.
ACCESSION   KCLJ01002573
VERSION     KCLJ01002573.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 443)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 443)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..443
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="287335cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>443
                     /note="ultra-conserved element locus uce-5272"
BASE COUNT          151 a           67 c           71 g          154 t
ORIGIN      
        1 ttaaaatata tttttctttg tattttactc tgcagcttat gtactcaaag catcacctaa
       61 gtaccaataa cacattcttg actgaataat gatgtatgtt gaatgttact ttttttgtct
      121 tataaatgga tggcaattta cacagctgtg gatgtgggat gtttcaatcc cagaccatgt
      181 tgtaagaaaa attgaatgac agtgagcaaa acagcagtaa ttataaaact aattactaaa
      241 tgctgatgat gcccataggc tttgcataac taaaattaga aaaggaaatt gctttcggct
      301 tcagagaggc aacatgctag ttatttcact gtttcagtca aaatggaaca tggtgtataa
      361 agttcaatca cacattagtt tatgcacata ttttttcata ctaaaatgtt aaagaattca
      421 gcctttttgt cttttaatac aaa
//
LOCUS       KCLJ01002574             517 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 287439cal ultra-conserved element locus
            uce-1508, sequence.
ACCESSION   KCLJ01002574
VERSION     KCLJ01002574.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 517)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 517)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..517
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="287439cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>517
                     /note="ultra-conserved element locus uce-1508"
BASE COUNT          157 a          106 c           99 g          155 t
ORIGIN      
        1 aatatcggtc cctctctatc cacagtcaat aaaaccccag accaagctaa aatcctgaca
       61 gcagagcact gaactaatct gacatcagct tcttccccag aaatgtttca agcagcaaga
      121 caatgtcctg cgtttttggc aatcagcaga tcagatagaa gagtctagca atacaacagg
      181 gatgtgtaat ctgacatgat tagacaaggc tctttaggaa cagaacattc ataattgaga
      241 caaagaaaga gtattaataa cactttccta acacggcagt tagccatttt atatttcctt
      301 tctttaatct tagtgttttt caacaaatca tgggatttaa tagcgtgttt tggcagatta
      361 gaggatttat ggcccagatg ttttttgttc taaaaatgga ttagggtgta aagtttgctg
      421 gaatccatgg aacatgttga ggcaagccgg tcattttgtg tgtgattagt gcctgccttc
      481 tgtctcacag tccctccatc tgtcacaatt caccaat
//
LOCUS       KCLJ01002575             509 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 287548cal ultra-conserved element locus
            uce-7566, sequence.
ACCESSION   KCLJ01002575
VERSION     KCLJ01002575.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 509)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 509)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..509
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="287548cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>509
                     /note="ultra-conserved element locus uce-7566"
BASE COUNT          137 a          128 c          108 g          136 t
ORIGIN      
        1 tctccccagt aaaggagacc tgcagagctc tgtccagaaa gggagcaata cagccgcctg
       61 ttcccacaca agtggggcga aaggcgagag cctttgagaa ttccctgctt cttttcctcg
      121 cctccctctt tttctcttcc tccaagaaat cacagtttcc cccctactcc tcccgttgga
      181 aagaaagaca gagaagacat tcttgacatt ctttgcagag aaaaggggtt aaatgtctga
      241 atttgggggt caccatgtta tacaaattgc aatctaatcg tttttacaag aacacacgtg
      301 tgctaagaaa aggagccatg gacaagaaag aaaaggggat agacaacctt gtcctatctt
      361 ccccctcaag gttttggact attgtcatgt cctgtctctc tcccctcctc acccccgaga
      421 gggagaacat tggttttata gttaaattgg ttcgtaaagc agaagggctt ggtgccattt
      481 ctgtttgttt tcccaaataa aagccccag
//
LOCUS       KCLJ01002576             469 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 287655cal ultra-conserved element locus
            uce-3931, sequence.
ACCESSION   KCLJ01002576
VERSION     KCLJ01002576.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 469)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 469)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..469
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="287655cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>469
                     /note="ultra-conserved element locus uce-3931"
BASE COUNT          143 a           95 c           97 g          134 t
ORIGIN      
        1 gacctccctg gatgcataca aggtgctgtc cttatctggc aggaatcact tctgaggtaa
       61 ggtgctaacc agaagcaaag gacagactta tctgtagtgt gcttctctct gaaaatttag
      121 tgagtgccta cctgctgctg ctgttctttc ttttcgtgct ttcttggcac atgtaggaga
      181 ggataaaagc ctaatgggtg cgagtgtcag cacaatataa attgctgcaa ggaaaaactt
      241 gatgcatggc tttggatctg aaagaagaat gtccaccatt gtttgtgatt atggatcaca
      301 tcacaatcta atagcaattt ttatttaatc aataatttcc atgctgaaca gacagccctg
      361 ttacagagaa tcgacaagca agtactgata gcgacaaggc ttgttattaa tctttaccct
      421 gccaacattt caaccaaact aaaaaagcac caccaagatg gatttagaa
//
LOCUS       KCLJ01002577             575 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 287764cal ultra-conserved element locus
            uce-3032, sequence.
ACCESSION   KCLJ01002577
VERSION     KCLJ01002577.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 575)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 575)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..575
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="287764cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>575
                     /note="ultra-conserved element locus uce-3032"
BASE COUNT          187 a          105 c           91 g          192 t
ORIGIN      
        1 taagtatgaa tgacagcgat agctaatgta ggattgagtt agttaaagaa aatcaatcag
       61 aaatcctcgc tatagattac tatccagttt cttctgcctt ttccagctag cacttctcat
      121 ccttgacttt gaaacccaac agtttaaact cggttcttgt ttcagtggac taatcccctt
      181 tcataaatca tgttcaagtg ctgaaataat ttgcacatcg tttaaagagt atttgctttg
      241 aaacattcac ctcaagccct tttgtatatc ctttctctct aaagatttgt agtatttgtt
      301 ttgttctctg aggtataaaa gacctgggta aactttattc ctgttgtttc aagattagtg
      361 aaacaaaatg catatttatt caactgggac tgaaaggagc tttagtaaag acgatcatac
      421 atacgaccca ggggaatgtt ataatacaaa atgtctgtct taaaatctct tcaggtttgt
      481 tcaaaacact actgaaggac ttaatttaaa gaagttacaa atccatattc tttgttccaa
      541 aagagagaga caccatgtaa acaaaataaa ctcct
//
LOCUS       KCLJ01002578             540 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 287875cal ultra-conserved element locus
            uce-5097, sequence.
ACCESSION   KCLJ01002578
VERSION     KCLJ01002578.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 540)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 540)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..540
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="287875cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>540
                     /note="ultra-conserved element locus uce-5097"
BASE COUNT          176 a           81 c          112 g          171 t
ORIGIN      
        1 ttcctgataa atctagttca tataaatcaa cagttcaaat gatgtgtttt ctgggtctca
       61 ggaggcgaca tatggctcac ttttggttta ataacttagg gagattgagt tttgaataat
      121 gtaaatggga ggcgggtgat aatttgtaat gctatgagtg caattagtga gatagattca
      181 ttttctctga aaagaagtct gattgctatg caaaaagcac ttttatttgt gatactggct
      241 gttcataatg tggtttgcaa tgcacaaagt ggcattttga tttggagctt taaagaattc
      301 tgggatgaat aaaacatgaa attaattgcc agagaagaac ctttgccaga ctagatgaga
      361 tctactgtac tgaatagaaa atataactta cgacagggtc tgttccactc ccaaaggaaa
      421 ttatgtcaaa aggttaaaaa gcacttcaaa taatttgcag taccagtctt cctgttcata
      481 tgtgggttga ttcatgtgtc ctatcatcct gcaccagaac agaaatgtaa aacatcaaac
//
LOCUS       KCLJ01002579            1000 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 287971cal ultra-conserved element locus
            uce-558, sequence.
ACCESSION   KCLJ01002579
VERSION     KCLJ01002579.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 1000)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1000)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1000
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="287971cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>1000
                     /note="ultra-conserved element locus uce-558"
BASE COUNT          342 a          169 c          161 g          328 t
ORIGIN      
        1 tatctacagc aagttactat gtgacaagtg ttccaaatat gacaagagct attatctgta
       61 aaggaatcta taactctttg taccatctga tattctttag catttcaagt aattagcagc
      121 ttattccaaa aacatttgaa cagttaacag atttgatacc tatggttaat cctcattcaa
      181 attacaatta catgatataa ttacatgtaa ataagaaaaa tgaattcaat ataactctta
      241 ctcttttcag tgttgggctc tatgttggga atcatacagt atgtacaatt agatttatac
      301 tgctaagcta aaaatattgg tgaagatcta aaaatgacga acagtgcctt ttaaattaat
      361 gtcttattag ttgagtgaag tacactgaca aagaataatt tatgcttatt caaactgctc
      421 tcgacatctt caggtgtttc caaatgagct cacagaagag tgattaaatg catctgataa
      481 caagccacac attgctgaaa ttacttaccg cctcatttta tgattaatta aacatgtaga
      541 ttaaagttgc aaaagaattt agattaatga gcaagttaag tcttgctgat ataagtgaat
      601 tgggaattgg atgctctgtg gaactttata aacatgcatt ttataatgag taagacaagg
      661 ctacatgttg aatcctggcc acaagggcct ttgacgatgc agtctttttt aacatggttt
      721 gacagctttc aaataacatt ctactataga ctttaaactt tgtgcattgc tgtaaaacat
      781 gagactacat aactcatgta ttaggagtac gattatttca aagctctcca aggtaatgac
      841 cccctgtagc agcagctgtt cagaaaaatt acaagctcga ttgttatttt aatcagagag
      901 aatttagtag ttaaaagcag ttatgcaact agtaaaatta tacgacactc catcagtagc
      961 cttatagcat ctttcatagt cctgttcctc ccaattcccc
//
LOCUS       KCLJ01002580             489 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 288083cal ultra-conserved element locus
            uce-6098, sequence.
ACCESSION   KCLJ01002580
VERSION     KCLJ01002580.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 489)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 489)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..489
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="288083cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>489
                     /note="ultra-conserved element locus uce-6098"
BASE COUNT          126 a          126 c          118 g          119 t
ORIGIN      
        1 gtaacgcacg ggttggggag gaataaaaac aaatctcgcg cactgtcaca ataaagtgaa
       61 attcctttct acacacccac aactttagct ctgtctgctg cctggggggt tttaatcttg
      121 caaagagaaa ggggggcttc ctgcgcaaaa ttacgccttc tcctctcatt tgttagctga
      181 ttccatcaaa aagttcgcta tttataggct acacacacga acctggagta atacaaaccc
      241 tcccgtgttg ttgccctcgc aaagtggccg gtcctgcagc atcggatcgg gtttgtgtgt
      301 gcgcgcgagt gagagcgagc cacgcagaga gcgctgccat ccgaaagggg aaagaagagc
      361 tcaagctgag agacttatta attgctaaga gctgctctgc caccagccat gtgagtacct
      421 aacaatgatc accttttgca cagatggtca gcgagcaggc acagacactt tctgtccttt
      481 tcctcttcc
//
LOCUS       KCLJ01002581             500 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 288190cal ultra-conserved element locus
            uce-7131, sequence.
ACCESSION   KCLJ01002581
VERSION     KCLJ01002581.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 500)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 500)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..500
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="288190cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>500
                     /note="ultra-conserved element locus uce-7131"
BASE COUNT          135 a           92 c           95 g          178 t
ORIGIN      
        1 attgtagtgt tgaaaatact cagtactctc tgaggcagtg agaactagtg aagtgtggag
       61 atttggttca ttcttagttt tggggccatt gtcaattaca gagtggctaa aatttataaa
      121 taatatgaat tgcatggttc tagcccagtg ggaagtggta tttcatgtaa ctcactgtat
      181 ttcttcttaa tctgcagatt tacatcaatg ctgtatggca tggctgggcc attcctatgt
      241 tcttattttt agcaattttg aggttatccc taaattacct catagccagg tatttgcata
      301 ctagcttact ctcgtttgaa agatgttttg ttatccttgc acccttcgct aatattacat
      361 taaacacagg gaaactcaaa tatcctaagt atcattgctc agtttcttta ttattgggaa
      421 ttagcatgct ctcagactcc ctcagcacac tgaaattcta atgttacttg aagaacaagc
      481 ttgctgtttt cccagcagag
//
LOCUS       KCLJ01002582             797 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 288298cal ultra-conserved element locus
            uce-3224, sequence.
ACCESSION   KCLJ01002582
VERSION     KCLJ01002582.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 797)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 797)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..797
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="288298cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>797
                     /note="ultra-conserved element locus uce-3224"
BASE COUNT          226 a          147 c          151 g          273 t
ORIGIN      
        1 agaaatgggc aagttctttg acgtggctag ctggttgaaa attgagcagt gttatgtttt
       61 gcttgctctg tgatgaattt ccttaaaatc aagagcatct gattttaaca ggtcttcctg
      121 ataggaacat cagtgaacaa tcagtcctga gcacattgac aagccaaggc ttctactgat
      181 aactttagtt tagtttcacg gtatttatat gtcgacagtt ttaaaaatgt acttagctta
      241 cctagctgcc atttttaata ttttccagtc ttcttgaaaa aagttattga tttgacctcc
      301 tacctaaaat aatgttcttt agatctaaag ctggttagac acattatctg actgagttta
      361 ctgaagcaaa aacattccat aaccttaacc ttttccctga ccccctgctt ttaacaactg
      421 ccgacatagt tttatgctgt tatgtgacca tgctcggatg aaatctgtca aacagctcct
      481 tgagttatta ggctgtctga gtctgacctt tctgcaatca aagatatatg acttaagggc
      541 tcagatttgc catggcaacc ggtccaattt gctgccgtga gaaaaggtct aattgttgca
      601 gaaatttaat gatctagagc gacatcaggg ctgtgagatt ttatgaactg tttacaccgt
      661 aattttcatt ttgttaatgc agtctttttt tgtaacccat tcatggctag agcataagtg
      721 gctgttttta tttaaaatag caatgcacac tataaaagat ggctcggtgg aaatattcca
      781 ctatttggaa gcgtatt
//
LOCUS       KCLJ01002583             724 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 288411cal ultra-conserved element locus
            uce-4584, sequence.
ACCESSION   KCLJ01002583
VERSION     KCLJ01002583.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 724)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 724)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..724
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="288411cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>724
                     /note="ultra-conserved element locus uce-4584"
BASE COUNT          257 a          127 c          112 g          228 t
ORIGIN      
        1 ctcagggata atgataactg acgcattcac agaaagaaat tctttaaagt tcagtaaaat
       61 ggataatata ttaatgtttc ggtatgttta ttaaatactt aacaatgtaa ctagcattgc
      121 tatctttttg catgtgctta gttaccattt taaacaacta caaaacagtg acatgtggta
      181 gtgaagattt cctaagcatc ccaaagcaat atatgtgtgt gatatatgac atccttccat
      241 aaatcctaaa tttacacagt atgctaatgc ttgattccat aatttctttt aaaaatgatt
      301 ataccctgct gctaagagca aaggcatact aaaatcagtt ttctatgctt ttccaacaat
      361 gaaatgcaag ccagcacacc acataaccaa tacttaccat atgttagaag ataatccagt
      421 aggcttcaga cactgacatg atttgcttaa ataaaaatcc cgttttttaa ggtagtaaca
      481 acagcctacc atttttatta ttcctttagt gacctactac agaaacacta atattgaata
      541 taaatatttt cgttgtaaat cagcctagtc tattttcatt gcctttaatg tgggatggca
      601 caggcttaga tgctaggcta gaggaaaaag agctgccatt aaatcattgg gttgttcgaa
      661 gaaattctca aaaccagaaa atattaatca gatcaaaagg agcctaaaga gcagcttcaa
      721 gatt
//
LOCUS       KCLJ01002584             584 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 288523cal ultra-conserved element locus
            uce-2261, sequence.
ACCESSION   KCLJ01002584
VERSION     KCLJ01002584.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 584)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 584)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..584
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="288523cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>584
                     /note="ultra-conserved element locus uce-2261"
BASE COUNT          180 a          121 c          141 g          142 t
ORIGIN      
        1 gaggcaagaa caaaactttc ctagttaact tgagcatagg atccacctta agaaaggtcc
       61 aaggagcgag atggaaacca aatacagtca aaggaagttg gggatgtggg tgtcaggttg
      121 tcagtaatct gacagctgtg gtaactaccc tctaatccag cagctccagc cacgctctcg
      181 gctgacaccg caaggactga ctgacagctg aagagcgggc acttcttaca ggcaaaagtg
      241 acatccagtc tattaaggct gacaagcaca aagcagagat ttgccctgaa tggtttggta
      301 ctgaagccta gtaaaggggt tatttgaaag gtcttagaga aagtgtcaga ctcaagctca
      361 gatgataaca atattgtaat gatagcactg gacaatgaag tgctatgatt gcccatacag
      421 gccaggaaga ttgcatgtgg atattgagct ccagaagcca gtttacagca gcaggttctc
      481 aaagcaaact tgcaacagct gtaaacacac tctgtgtcag aaatttaatt tttcccagtg
      541 gataataatc tacgcgtgcc tttgttactt ttgctctagt gcct
//
LOCUS       KCLJ01002585             464 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 288635cal ultra-conserved element locus
            uce-3509, sequence.
ACCESSION   KCLJ01002585
VERSION     KCLJ01002585.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 464)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 464)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..464
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="288635cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>464
                     /note="ultra-conserved element locus uce-3509"
BASE COUNT          152 a          103 c           83 g          126 t
ORIGIN      
        1 gtaaagcaac taaattaagt tttcattctc taaaactaca aaatcattta cttcaggtat
       61 tggagaaatt ctgctttgac aaatgaagac tatttaacac atcaattcac attcctccac
      121 caaattgtat ggatcacatc agtttttagc tcccagaaca aagatggtag gaacttttcc
      181 acagtaactc agatgcatta gtttcattag cagcctgtct cctcctctgt ggctccctgc
      241 tgcaactctc catgctttga tagccctgta caatgctgct tgaactccat gccacaaggc
      301 aacactgtaa agaagctgaa agcaaagaga aagagaatca tccagagagt caaattgtcc
      361 tgtagccact tttcacaatg aaggaaggtt atcagtggca tttactgcaa cttgtgcagg
      421 tcctcagaat gtgagcaaaa aaaacagcat agcagtgctg aaga
//
LOCUS       KCLJ01002586             642 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 288744cal ultra-conserved element locus
            uce-3716, sequence.
ACCESSION   KCLJ01002586
VERSION     KCLJ01002586.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 642)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 642)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..642
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="288744cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>642
                     /note="ultra-conserved element locus uce-3716"
BASE COUNT          200 a          125 c          160 g          157 t
ORIGIN      
        1 gagatggagg cagaggagga cctgggggaa gaagagaaga gagcaaagat gttgaagggg
       61 gtgggggaag atgtggaaaa aacaaaacag ttccagggca gaagaaggga ggatggttcc
      121 atttaattag gagggaacat gagcaaaagc tccaagagcg catgcacaca ccctctgctc
      181 cacaccctca ccccccagag aaaaaaaatt catcacaccg attttttcat ggtctggcag
      241 tcaagtgata aaattatcag atgagggtcc cattctcctt tcctgcagtc actttcgcca
      301 agtgcaccac gtctgaaata atgaagcaga tttgattaaa ttttcgctgg ctgaagcagc
      361 cacgctaatt tggagatggg cttattagtt taatgaccga tccgaataat cagaattcat
      421 tagcattagt gccactattg tcagctcaac attagccctg ggctccagta gatgcatggt
      481 tatatattta tatagaagga ggctgtgttt ataaagggtg aaatggagag gaaaactata
      541 tattacattt tatacttcct gcatatcctt gtccattagc aatccactga acgaggaata
      601 aaacaaggct ttgtgagagg gtcatgctgc tctgccctgg gc
//
LOCUS       KCLJ01002587             818 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 288851cal ultra-conserved element locus
            uce-1556, sequence.
ACCESSION   KCLJ01002587
VERSION     KCLJ01002587.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 818)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 818)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..818
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="288851cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>818
                     /note="ultra-conserved element locus uce-1556"
BASE COUNT          250 a          171 c          150 g          247 t
ORIGIN      
        1 aagtcagagc aacctttaaa ataataagac aaatcaattt atttcacaaa tgtctttatt
       61 tccaaatgcc attgtttggt actttctact gtcattgccc atgacatttg agaaaacttg
      121 gctcttagtc atttaggtgc agcagaaatt atcatgtaac aacgatgtga aaaaattata
      181 cattcacctc agtgcagatc tgttgtaaca accttgtcct atggggtaaa gagtgtttag
      241 gaggcggggg aaggcaagaa agacaagttt taaatatgga cagaaaagcc ctactttatt
      301 gctatataca atgaaaagta attatagaga aaaatgaaag ttgcttcttg ctgttagcag
      361 gaagaataag ggaattctgt tcctttttaa agcttggagt ccattttgat ataattggtt
      421 ccagaattat ttatgacatt aattgctgca ttatcgactg cctgtcagct cttctggcag
      481 ttagtccatc tttcttacca cagaaagcca gctcagccca aactagactg acaagctaat
      541 tatacccatc ttccccttca atgacaaatg ctgctcatcg gaaacctttc tagaaataag
      601 ctttcattct ttcccctttt tcctgagcca gacacaacca atatctcaag gtacagatca
      661 cagctgaaac tctgctcaca gggctattag ctctgaacat ctcacttgag cccatcttat
      721 gttatcaaac tgtatgtcat tccctgatgc tagttttcag tggatgtgcg ctgggccgta
      781 gctgtcactc aaagccacgg cagatggagc aaacctga
//
LOCUS       KCLJ01002588             717 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 288960cal ultra-conserved element locus
            uce-6558, sequence.
ACCESSION   KCLJ01002588
VERSION     KCLJ01002588.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 717)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 717)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..717
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="288960cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>717
                     /note="ultra-conserved element locus uce-6558"
BASE COUNT          234 a          126 c          134 g          223 t
ORIGIN      
        1 aaaagggtta caccacacac agacctcagc tattaccccc tgaatgctac ctcactgaaa
       61 taatctggtg acaaaccttg ttctgaaagc cacccgtgag caggacaggg ccatttagga
      121 gtttctgtcc agagtgagag ggaagtcaaa gctctccagc ctatattatt tcttttctta
      181 gaatctggga aggaggcaga gattctaaac aaagataagg tgtaaagaag tggacacgac
      241 attaaagaaa taaaatccat atcagggcaa taatggtcat aaagcaataa agtggatgta
      301 taatagttcc tggactttta atttgtgact aatttgttgc acaatgaggt tgcaattttc
      361 taattgtgat tgccatttta attttactca tggctgtgca actaacaatg tatagtctag
      421 taattaaaat taattgtacc ttcacctgca tatttctatt aggctgttaa atttagtcag
      481 taggctcaat gattttgttc tctgagagat gctgaattca tttcagtgag cccaattatg
      541 ttacactctg taattcctgt atgaaaaaca agcattttac tttaatatga ggagttgcta
      601 caatcccatt tttaaaattg catattcaac accagaatac aggctgacag gagatacttg
      661 taagggcttt ttaaaaataa cctgcttgtg aggtaccttt tacaaaacta gcaatta
//
LOCUS       KCLJ01002589             654 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 289070cal ultra-conserved element locus
            uce-7208, sequence.
ACCESSION   KCLJ01002589
VERSION     KCLJ01002589.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 654)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 654)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..654
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="289070cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>654
                     /note="ultra-conserved element locus uce-7208"
BASE COUNT          211 a          105 c          114 g          224 t
ORIGIN      
        1 gattgattac tcaaaaatcc tttcaaaagg agggaaaagc tctgttcaag ttccacttcc
       61 taaagattta gcttctgtgg agaaaaacct cacattcagt tacatcgagt ggtcactcaa
      121 tttgtttatt aaatagtcaa atatattctt ttcagtatat atgaatagtt taatttattc
      181 tgctgaaaga gagataagta tcagaaatag caatagaagt cacataatga gataagaata
      241 ctagaaattt tagtacagtc cattattcat tcaattcctg gcagccttta tgattacaaa
      301 tcacttgatt gactaactag aaaagtgaat tatgaatcag gttcattttt cctggttgag
      361 agttggtaca tgttgtaact cttccacttt gtgatatatc aagctcttgt aacagtaata
      421 agagatataa tcaactccta tttcaggaca aataaattgg cttttcaaaa atgaaatgtg
      481 gttgctaaca tttttacagt gtgcaattta attccttcct gctattctca gagtgcaatc
      541 tggtgtgatg acacagcttt tgaatatttg actttgctga aattctttta ggagtctcac
      601 accctcagtc caggcatact gatatcagtg gaaatttggt gctgggtcta agag
//
LOCUS       KCLJ01002590             407 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 289176cal ultra-conserved element locus
            uce-7449, sequence.
ACCESSION   KCLJ01002590
VERSION     KCLJ01002590.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 407)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 407)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..407
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="289176cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>407
                     /note="ultra-conserved element locus uce-7449"
BASE COUNT           97 a           84 c          112 g          114 t
ORIGIN      
        1 gtggggatgg ggcagatggg ggtggagtgg taggtggagg gatggggcag ggtgcctgcg
       61 attggtaaag ctccgcgaag gcatctgcca acaggacttc agaggaatgt gaaaccaaat
      121 catttggaag ttaaagatag acgcagaata cacagcatct ttttaaattc atccctctgt
      181 cagcttgcct ctgtctcctc tataatattc cctaacatca ttctggattc ttgggaatta
      241 ctaaggtggc aaaagagatc atggtgcata cagtggggta agtagaaagc cctctgcatt
      301 tgctggggta gttcctctgg gctttcctgc tgccttcaaa gcactctcct ctaggatgag
      361 gtggatgctt ccgttttccc catatggagc atttgaactt tattcct
//
LOCUS       KCLJ01002591             500 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 289273cal ultra-conserved element locus
            uce-3020, sequence.
ACCESSION   KCLJ01002591
VERSION     KCLJ01002591.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 500)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 500)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..500
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="289273cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>500
                     /note="ultra-conserved element locus uce-3020"
BASE COUNT          122 a          125 c          115 g          138 t
ORIGIN      
        1 cacaaaacgg gggaggaaat gaaaaatagc agtctacctt tcaaatctga gtgttgcctg
       61 caggcatgct ctgcagtggt cagcttcagc cccttgtata ttgccacttc ccatgctggg
      121 aagattcttg tcatccctca catattttat gtgcagaaaa ggctgccctg ccctgtgctt
      181 ggtgattgag gctgtgcccc tggtgtgcca cactatcagt ggttcccaag gctgcctagc
      241 ctgggaaaag ctgcatggaa acggtccaaa atcagcatta catgcattat tgttcttact
      301 ctctctgatt agagtgcaca caatgaaaac aacagcaaca gcctcgtttt ccagctctcc
      361 tcccaacaca gggctgttct taggctgctc agaatcttca taggaattaa ctgcttctgt
      421 gctggtgcag cttctctggg aaagagctta gtctgactgg gagtattttc aaaagtgcct
      481 agctgacttg tgaaatccca
//
LOCUS       KCLJ01002592             523 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 289380cal ultra-conserved element locus
            uce-788, sequence.
ACCESSION   KCLJ01002592
VERSION     KCLJ01002592.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 523)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 523)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..523
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="289380cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>523
                     /note="ultra-conserved element locus uce-788"
BASE COUNT          163 a           81 c           86 g          193 t
ORIGIN      
        1 ccacccaaat agcaaaactg actgattttc atatatggct ctgaagactt taaatacatt
       61 tactagcaag ctactatagt agacacatgg tgtcagcttt taattgtaac tgtcttgcag
      121 agtggtgttg ttttaatatc ctgtatagat ttttatgtaa tacacttact tgcaggcagc
      181 ctgaagcaag aatcaattct gtgaaggatt cttcttttgt taaaagccaa tcttgtttta
      241 atgatgcatg aagaaatatt cgagcattga catttttctg tcaggtttct tttgaaaaat
      301 caattaagat aatactgctt tgacctagtt atctagttaa tgcttattag gaatgtaata
      361 tgatttactg tcagcataat aatttttgta tcttatccca ttagcttgtg catatttcaa
      421 agtgtattac acaatggtca cttcttaaaa tgtaatgtag cagaatacat taattagatt
      481 gactgggatc attagacaga aactatccca ttggctcttt gta
//
LOCUS       KCLJ01002593             647 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 289488cal ultra-conserved element locus
            uce-7804, sequence.
ACCESSION   KCLJ01002593
VERSION     KCLJ01002593.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 647)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 647)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..647
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="289488cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>647
                     /note="ultra-conserved element locus uce-7804"
BASE COUNT          200 a          117 c          129 g          201 t
ORIGIN      
        1 gagagaaaga aagaacaatg tgcaatcggc actgcattag agatggaaaa agtacttaaa
       61 gcctgcaaca ttcatcaagg ctgaatacat aaatgccaca ttttgaataa gccaagcaaa
      121 agacaatgac aaaggaaagg cgcgttgctt caggaatctc tatcattttc atttgctgct
      181 gtcaggaacc tgttttttgc ctctcactct atcagccatt atagcattaa tgaagtaacc
      241 tcacatagtt attgactggc ttgtcagagt ccctgcctga tcccttaata gaaaccattg
      301 gtcttcagtt aaaaatgggg tgagctggga ggtgctgtgg gcatgtgctg aatttcaagt
      361 gcactcctga ggttatcaaa agccatgaaa tgcaaattat tatatttttt aaacacacag
      421 atttcatgca actgagcata taaaattgac taatactgta ctttatgcat tcctaataat
      481 gtttccaaat atgctctgca tatgatcttt ccccagaaag ttgtgggtgg tatttgaata
      541 agcagaaatg ggcctagttt tattttgtga ataaagtagt ttcctggacg ttgtgagtct
      601 ctgttccttc taatataagg taatgtttat gcactgtctg ttcaaac
//
LOCUS       KCLJ01002594             801 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 289595cal ultra-conserved element locus
            uce-7322, sequence.
ACCESSION   KCLJ01002594
VERSION     KCLJ01002594.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 801)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 801)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..801
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="289595cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>801
                     /note="ultra-conserved element locus uce-7322"
BASE COUNT          244 a          140 c          168 g          249 t
ORIGIN      
        1 aaaacacaga aaatctgatt atcataacac gttgcacagt gagaggcaga tctcacataa
       61 tgtaaaatca attcacctaa atctctttag cctgagctat ttctgagatg ggcagcaaag
      121 ctttagtgtg agaaagagcg aactctgtga atatgcatat gctgaataac ctgcatgcct
      181 cgggtggaaa ggttaattct ctaatgcacg tgtattacct aagccccttt ttaaaagttt
      241 tgggttttca tgtatatgat taaaattgtg gtttgcagtg ccagagccaa tttcttgttc
      301 tggaggtgag gctgcggctt gctgcgttgc aaatgtcacc ggcgagacgt ttgttagggc
      361 tgcactgcat gccggttaat ctgtttactt atgcaatggt ggaaatgtga cctggctatt
      421 gtggtgatta acagagtcaa atatcctcac attaactagt gagctgggca atcaggctag
      481 attattgtta cattcaattt aaattacagt ggcatgacag gtcctgaggt atttagtaac
      541 ggatttcaca gcacagatat gcttcatgtg taatgaataa actctggaga gcaacaaaaa
      601 gaaaaaaata aaataaaaag gtattttatg atcattgtga aaaatttatg gagtgtagct
      661 ggcatgaaat tctataaaat gaactggctc caaccagtcc cacttttctt cctgctgttt
      721 atgaattatt attaccgagt cctcctatgt ttactcatta gcattgaacc ctttgcaaaa
      781 ctgtgattca aaattgaatt c
//
LOCUS       KCLJ01002595             525 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 289706cal ultra-conserved element locus
            uce-6223, sequence.
ACCESSION   KCLJ01002595
VERSION     KCLJ01002595.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 525)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 525)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..525
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="289706cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>525
                     /note="ultra-conserved element locus uce-6223"
BASE COUNT          160 a          117 c           88 g          160 t
ORIGIN      
        1 ggctcacaca gacacagtgg gatatatatg tacaacataa taaacccctc cctaaagaag
       61 caactgtata tccaaaggga tacagaatca gaattgtaaa aatcatagtg aagtttgctt
      121 gatgtaaagc ctgagatttt cagttggttc ttctgcaagg ctgcaacacc tgccagatat
      181 gttaaactct aattttttgt ttctttttct catttttgct acagtcttta gactaagcat
      241 gcaagacata caactaagtg caactgagtg aaatgtattt tttatttact cattccctaa
      301 cagtttggac tgaggtatgc gtactaacag tttctcatgc tgttatcttt actcatgtct
      361 agctacacat gctgagaatg aactaatcta ccagattttt atcccccttc tgaataccga
      421 actaaccagc aaaccactca gttttgaagc acagggctca attctcaccc tgtctggcta
      481 ccgccggcac gtcacgaagc tgcctggata taatttaaac caaaa
//
LOCUS       KCLJ01002596             730 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 289810cal ultra-conserved element locus
            uce-7207, sequence.
ACCESSION   KCLJ01002596
VERSION     KCLJ01002596.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 730)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 730)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..730
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="289810cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>730
                     /note="ultra-conserved element locus uce-7207"
BASE COUNT          214 a          159 c          138 g          219 t
ORIGIN      
        1 aaaagcaaat tgcttccctc aattacgttt tcttccttgt tggaccaata cacacaaccc
       61 agaattaact cactgcagat gccattgtgc atccctggtg gttctttgaa gtcccaagat
      121 tttggcgttt gttgccaccc aggtatggaa ggagaagctg ttgtctctca ccatctaatc
      181 aagacaataa ttacaggcag tggaactgga gctaagaaga ggaaaaaggc ttttcaatca
      241 ctgcctctgc atttcaatcg aagccccatg ctgtacaaca ctggagaaca aggtgtaaat
      301 cagcttaaga acatagttct gcattcaatg cattgtggtt tacagctccc aaatgacctt
      361 catctatctt ccttagctgt agaggtgtat aattgaacta aagagagcct tgaataatga
      421 ggttgagagt ggcatctccg ctgctgctgc ttaatagtgt accaggcttg cacttcgttt
      481 tctgatatgt aacaaaatac tgcagtggct ccaattcttc agggtgacac ttggtgatag
      541 ggcctttttt aaaatagaaa agagcagggg ttttacctcc tataaatctt tggctgcaac
      601 taggctccca aaaatacaat tatatgaacc attttctatt caatatctgc ccacaaaagc
      661 tcagagagac aaacagcaat tatctgctct tctttcactc atggaatcta tttttaaaac
      721 ttttcatctt
//
LOCUS       KCLJ01002597             588 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 289918cal ultra-conserved element locus
            uce-4113, sequence.
ACCESSION   KCLJ01002597
VERSION     KCLJ01002597.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 588)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 588)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..588
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="289918cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>588
                     /note="ultra-conserved element locus uce-4113"
BASE COUNT          172 a           86 c          112 g          218 t
ORIGIN      
        1 actttgaact ttttgatatg gttaatatac acaccaaatc ctatctaaat ggaagaaatc
       61 tttgctgaaa tgttctcata ggtctcacaa aagagaaatg cctttttttt cttttaagag
      121 gattgaaact caagaatgca acatatcagg atttcttgtg tcctacagaa aagttttttt
      181 tctattaaag gtgaggtttt taatatacaa aaatgagcta atgatgcttc agatgatata
      241 tgtaatgtat tctttttatt ttatgtgtag atggctcttg gacaagtccg agcagtacaa
      301 cacactggga gggaatgccc tctcctttta aaggcaggaa tttttattta ttacctgtgt
      361 ttagtatgta aacatgacat aaactagtgg atctttctgg attgacacaa atatttcttg
      421 gaatatgtgg ctgagttttt gctgcacata aattatggtg gttcaccttt attttggggt
      481 ggaagcatct gaagtttatc ttttcagata caggttcatg atgcctttta tttctctact
      541 gtacagaaag gatttcgaca gtagtgattt agttactgtg aatctgcc
//
LOCUS       KCLJ01002598             683 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 290028cal ultra-conserved element locus
            uce-6591, sequence.
ACCESSION   KCLJ01002598
VERSION     KCLJ01002598.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 683)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 683)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..683
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="290028cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>683
                     /note="ultra-conserved element locus uce-6591"
BASE COUNT          211 a           88 c          113 g          271 t
ORIGIN      
        1 gaaccaaatg ttctaggttc atgttttatt gcattaagtc gtgtgtatgt gaagtgtcct
       61 ttgaccagaa ggttatcagt atatttttat aaatttgaaa ttcattgtgt ttttcattct
      121 tagggtatat gtgctagatt tgaaacttaa catttttagg cacagatgga aaaagttatt
      181 ggctccttga aaacatatgg gacaaaatgg atcctcaaag catgtatgta cttacaaacc
      241 aagctgtaga gatcaagaaa agaactttat tgttgatctc aagatttcta aattgtcaag
      301 atttatatgg agttgtggtg gaactagtta acacttagag cttttggtat gtaatgacta
      361 tttgctatgg actgatatta aatgtttcaa aggattgcgt tcttaaactt tctggatttt
      421 tgttactctc agatattaag aaaatttctt tgctatatta cattaaaaac ataagaactt
      481 tgggtctcgt atttattttc acttgtttta ctaattattt acagaacacc gttttaactt
      541 ttttatttta taaatgtgta gtattttaaa catatcttta aaaattgttc aattggaact
      601 acattaactt ctgatttgtt tttattagga aatacacttt ttccatgtcg gtgcacagca
      661 cttaacagaa atgtttgtat tcc
//
LOCUS       KCLJ01002599             527 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 290139cal ultra-conserved element locus
            uce-6800, sequence.
ACCESSION   KCLJ01002599
VERSION     KCLJ01002599.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 527)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 527)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..527
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="290139cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>527
                     /note="ultra-conserved element locus uce-6800"
BASE COUNT          148 a           81 c           93 g          205 t
ORIGIN      
        1 gaaccatggt tcatctttgt agttagtatg ttgagcttta atttgtagag attgtttagt
       61 cattatgata aaacttatta taaaaatttt gataatgaag agttaaaaag ctcttagtgt
      121 tttcttttta taagccacct gttgccttag atgcataagt atatgaattt gaacaaagtg
      181 ctcatcactt gtcagccatc agtggcagca taaaaattac ttgtggtgct tgctttgcaa
      241 gaagttcttt tgtgtttgtg acatcagctt tgttttatac aattaaagta ttacacgcta
      301 gaataatcta aattgcaacc actaaatggt gatgtagttc ttttttcata gagctgaatt
      361 tgtttactgg ttgtatacag ctattgacta ctgtttaaca tgacatgtcc cttttgccta
      421 gaacagtctt tggaaaaggt ggttttttgt gtcctgttct tgtctcccac ccttcaccat
      481 tatggagagc ttttctcgta ctttttttaa caagtagata aaaatac
//
LOCUS       KCLJ01002600             569 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 290248cal ultra-conserved element locus
            uce-5642, sequence.
ACCESSION   KCLJ01002600
VERSION     KCLJ01002600.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 569)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 569)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..569
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="290248cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>569
                     /note="ultra-conserved element locus uce-5642"
BASE COUNT          166 a           97 c          114 g          192 t
ORIGIN      
        1 ttttgtaaaa tctaggactt catttcctga atgctcttac tagttctagc tttgtttatt
       61 ttggccttag gttgcattag ataattagtt tttatttagg agatgagtct tatgttgcaa
      121 caaacagtac taaatttgag tctttaaaga tgccatactc cagccataac actttaaagc
      181 aacatgcctg tctctatggt ttatggaaag ctcagaagct tacttgattt ttttttcttg
      241 attccagggc tttttccgca ggagtatcca gaagaacatg gtttacacat gtcacagaga
      301 taaaaactgt gttatcaata aagttaccag aaatcgctgc cagtactgca gactacagaa
      361 gtgctttgaa gtgggaatgt ccaaagaatg taagttaaat aatttgttgt ttgtcatatc
      421 tacagatatg gcagttatgt aattatgtga ttgaagccaa ggaaaaggag tacgaattcg
      481 gtttagacct gtattctgag tccttaacac tgcagcctaa aagctgtgtg ttcttctgcc
      541 tggaccctct ctgaaaggtg aaacgagct
//
LOCUS       KCLJ01002601             690 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 290362cal ultra-conserved element locus
            uce-1750, sequence.
ACCESSION   KCLJ01002601
VERSION     KCLJ01002601.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 690)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 690)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..690
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="290362cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>690
                     /note="ultra-conserved element locus uce-1750"
BASE COUNT          203 a          156 c          137 g          194 t
ORIGIN      
        1 tgaatccccc aaattaccat aagccttgtt ctttaagttc aggctaatga gtcccatttt
       61 attcatattt ttgaacgcgt ttgatagtct ctttgtttat tcatcaccaa agtctatata
      121 atttcctgcg ttgtttattt acaatctctc cagcaatatt tatttagggc cttggcagga
      181 gaggaggaga gcagctctcc tgcacggctc ccgtcccatc tcagcccatg gagctctttt
      241 gacagacagc ataaaaaaaa tctgcataag gaaaagtaac tgacagctgg ggtcagactc
      301 tctctgttta atgacactgc cagttacaca ttttgaattg tttaaatatg agtctacagc
      361 ttcaacgatc atcatctcac tggttccact tttcataccc aacagccagg aaagtgacac
      421 gtaattacac acttactgat ggtatcgccg gggccgataa ttaaaactgc cacgggagga
      481 ttgctattgc gaggctacag ctgggatgtt gtcaagaggt agaaactcca gcagctttta
      541 acgctatctt cttacaggtg gacggtgaag gaatagaaag gcctcagcac atcattcaca
      601 atgtctcgca caaatgaaga aaatctatta acaatccaat aagtgaaata caaacacgct
      661 gacccaaggg ttaaactgtc tgcgtggacg
//
LOCUS       KCLJ01002602             533 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 290472cal ultra-conserved element locus
            uce-6043, sequence.
ACCESSION   KCLJ01002602
VERSION     KCLJ01002602.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 533)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 533)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..533
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="290472cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>533
                     /note="ultra-conserved element locus uce-6043"
BASE COUNT          159 a          101 c          111 g          162 t
ORIGIN      
        1 aagaatgaaa taaaatgtgc tctaatttga acccagtaac agaactactg catctgatca
       61 gatagcatgt taatatatgt gcagtgtgtg tatataagca gtcttttgct taaccagtta
      121 gctggagagt tcattagatt ccctatgagg tgcaaaagag gggaaggaag ccagcgtgga
      181 gttattcatt gtcttatgac tcaattctaa tcacttcagt cagtgtgact gacagagaaa
      241 tgctttccac tgtgattgag agtattgatt tcttagcccc ttttggggca cactggagag
      301 acacaatcag agccttcact ttcaaaaaac ctcttcatct gccttaatca tctgatcgat
      361 aatcagcatc agtgctgggg atcttcaaca aagccttctc cggtgtcttt attttctttc
      421 ctccattggg ctacaaatct gctgagtcaa ggtgattgta atagatcaga aaagtgaaca
      481 gtaagcaaca atagtgacag cttttagtga cgcttgttaa gcatataaag ttc
//
LOCUS       KCLJ01002603             596 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 290577cal ultra-conserved element locus
            uce-5599, sequence.
ACCESSION   KCLJ01002603
VERSION     KCLJ01002603.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 596)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 596)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..596
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="290577cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>596
                     /note="ultra-conserved element locus uce-5599"
BASE COUNT          201 a          119 c           96 g          180 t
ORIGIN      
        1 acccaacatt ctggtaaaga actgaccttg aatcttgaaa caagtcactc ttacaccagc
       61 agtcctctcc tgtccacagc aaaagagagc aagaagcaca cgcgtgtggt gcctgcgcgc
      121 ttctgccact gagacagctt aagttcatgc acatttttat tgagtagtaa tataaaatgc
      181 ttctttcatt gttacaagtg catgctttga ttgccaacat ttcgaagtca aattacaaag
      241 gcaaggctgt aggctgtagt gaattacttg ggcacttata caattgttaa aaaatatcaa
      301 tggactgttt gttttgtttc cttttctttt ttagaatgaa ccagttgaaa cccgtaactg
      361 atatacaaag ggaaaaaagt gaaaaaatta cacattttgt ggcacatgac aaaacagaac
      421 aaaatgacta aaccattatg acattaacag ttatcatgca tttagaattt cacatgtaac
      481 tacaaactta tttaaatttc acaaggtttg ctaaacatgc tacccatcta tatgtgcact
      541 gacaagctta tgttaaaaac tttaagaata ctctcccccc ttagattttt caaagc
//
LOCUS       KCLJ01002604             658 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 290690cal ultra-conserved element locus
            uce-6684, sequence.
ACCESSION   KCLJ01002604
VERSION     KCLJ01002604.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 658)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 658)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..658
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="290690cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>658
                     /note="ultra-conserved element locus uce-6684"
BASE COUNT          140 a          160 c          160 g          198 t
ORIGIN      
        1 aacctgcaat tctgggcaac ggtcccctcc tgggggctgc caaatgggta tagtttatct
       61 tttggaggga agatggtttc catttgctga gataggtgtt tgttgcccag gcaacccagt
      121 gtatttacag cagctctgca aggtgtgtgt gtgcatgtac atgcttgtgt atgcctttat
      181 ttccgtgctc cggctgcctg cctctgattt aagggcaggt tttattcccc agctgcctca
      241 gggctcctct tttctgattg cattaaagtc tccgtaattc tcccctcatt aatgattggc
      301 atatttttac ctctcactaa aggagcttgg aggcaactcc cgtggggccc tgctcgccaa
      361 atgaaacaat ttcatcctgc tccagaaacg cattaaaaag ggtttgtcag gatcttatcg
      421 ctagttaggg aaagctaatc aaattacttc tatttattag ctgctgcagc aatgtgtcat
      481 tccatcaagc acaggtagtg ggacaggcag ggattgcgtg ctgagctctg tgcagccagc
      541 actgctgcct tgatctgcac aacagcatct cttgccagaa gagaagctgt gaacttcccg
      601 gtgacagtgc ttcgggacaa tgctgcccct ctttgtttgt ccttagtagt ggcattcc
//
LOCUS       KCLJ01002605             567 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 290803cal ultra-conserved element locus
            uce-7484, sequence.
ACCESSION   KCLJ01002605
VERSION     KCLJ01002605.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 567)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 567)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..567
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="290803cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>567
                     /note="ultra-conserved element locus uce-7484"
BASE COUNT          153 a          112 c          129 g          173 t
ORIGIN      
        1 tctcagcatc tgatgccttt atgtgtttct ttgcaaaaag tttcactgcc acaattccct
       61 ggatggtaca cagtgctctg agcttctgcc tgcacaataa gtggttttaa acatttctgt
      121 ttaatcaaga gtgaagtaaa tgtcagagat tcaatgttct agatcagcag tttccaacac
      181 tgatacatct taatcaagca attaggtgcc ttgtcattgt ttggtgtttt ccacgctgga
      241 gaagggaaca gatttgctgc tttgctctga tgactgctag cagcagtgtt tgttgttaac
      301 agagacatgt acacctaacc accagttggc aggtgttaac actttgttac tcgctattcc
      361 cacatgctga ggattgtggg aaagctgtca agctctctgt cttgtgtact cagcttttac
      421 aatcaacatc aacaagctct gaacaaattc agcagctctg taggaatgca gagatgcagc
      481 gttagcaagg gagacaatag gactggcttt gatgggagct gtagaaagtt tatttcctta
      541 aaagcaggta gatgaaggct gagagct
//
LOCUS       KCLJ01002606             654 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 290913cal ultra-conserved element locus
            uce-3410, sequence.
ACCESSION   KCLJ01002606
VERSION     KCLJ01002606.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 654)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 654)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..654
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="290913cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>654
                     /note="ultra-conserved element locus uce-3410"
BASE COUNT          208 a          129 c          116 g          201 t
ORIGIN      
        1 actctccagc tacgcagcaa tttcttttca agaatggttt ctatcgtctt gtctcaaaat
       61 tcgttggcca agaaagttta actttgtatg atgctcaaaa tcatgccagc atgcttatgg
      121 aataaaagaa caccgtgtat tttatggtac aaaaatcaaa ggttgctctt cctgctactg
      181 gttttactca gcagtaaaga gaaaaccttg caagtgttgt ttacacagta ctaaatcctt
      241 gtaaagtcat actgaaacaa gtctgctatc tgacctagcc cttagggcta cttaaacacc
      301 tgtggattta tagagttcag atgtctacaa ggtctgcact gaagttcatt tccaaacctg
      361 tgccccatgt gaagtccttt gttggcacag ttaagccatt actacttgtt tctggtttgt
      421 aaggcaatca cattatgaaa cagaaagagt tcagaattaa gataacttac ctttatacac
      481 atgtaaatgt atataacagc taaaagctca acatttttta tttgcagaag attcgggatc
      541 aaaacaacac agggaatgag aggagttatc ctcatctaat gaattcccca gcaggatctg
      601 tacatgttaa atacaaatca gaccatcaag ttcaagcaga gtatgctttg ttct
//
LOCUS       KCLJ01002607             849 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 291021cal ultra-conserved element locus
            uce-1783, sequence.
ACCESSION   KCLJ01002607
VERSION     KCLJ01002607.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 849)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 849)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..849
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="291021cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>849
                     /note="ultra-conserved element locus uce-1783"
BASE COUNT          273 a          168 c          153 g          255 t
ORIGIN      
        1 ccccagctat caagagaaag gaaatccata tattgcgcta gtgacaaaac aatatgcagt
       61 catttcagag ggtctcttta ttagaaagaa acatacttta attagaagaa atatgttaat
      121 ttcaatatca tattcttcat atctctgccc ctcacaccta cattcttttt atggacagta
      181 caaaggagga taatagatgc ctataaaagt aactagtgaa attctgcatt aggataatct
      241 gtcacccatt tccatttttt ctgaagaaag caagcataat caaaagccta aatgacaaag
      301 agttgacagt aagattctgt agtaaatgat tccagagtcg ctggcctgcg gagatgctga
      361 agaagtcccc agcagacctg attaattcca gtttctccag ctgccagggg agcagaggct
      421 aagcagtttc acagagagga gcctattacc actactaggc tgaaatagat ctaatcaact
      481 cacagccgct caaaagaaaa ctttacaggt ttagctcact aaggcagcgc tttaaaatga
      541 tgactacaaa ggatcatggg agtctgaaag catttagtct ttattgcagc tcaaggaaat
      601 tttctgctgt ggttaggcca tgctaattta ctgaacatga caatgcctcc cagattgtat
      661 gacatcattt cagtaatggc tctcgtcctc ttagttaaat atttctacta ctacaaattc
      721 tgaatacttc atttattgga ataccatcta tcttaggatt aattaggttt atccttccaa
      781 atctatgggt aacctgcttt atcattcagt ttgaatgatg atgctgcata acttgtcatg
      841 gcattgtca
//
LOCUS       KCLJ01002608             875 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 291131cal ultra-conserved element locus
            uce-246, sequence.
ACCESSION   KCLJ01002608
VERSION     KCLJ01002608.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 875)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 875)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..875
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="291131cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>875
                     /note="ultra-conserved element locus uce-246"
BASE COUNT          216 a          241 c          190 g          228 t
ORIGIN      
        1 agggtatttc actgtacatg cctaggaaat ggagcatgtg ggagggaaca atgaaaggca
       61 gttggtagtg tagctgagaa agctgatccc tgacaccttt tcataatgga tcctctctca
      121 cccttaagtg aactgaaaat ggtgcattgt gtcattaaaa tgtactaatc ttttctcttt
      181 tccatcccag gaggtgaatt agttatccct ctacttgtag aagacccttt agatatccct
      241 cctattgcta ctcgtgcacc tttcattaca cttcccccta cctttcgccc cctcctcacc
      301 attattgaga ccaccaaaga ttccctgtcc atgacctctg aggcggggtt accttgcttg
      361 tcggaccaag gcagcgatgg ttgtgatgat gatggcttgg tgatatctgg gtatggctca
      421 ggggaaacct ttgactctaa cctaccccct actgatgatg aagattttta caccaccttc
      481 tccttggtaa cagataagag tctttccact tcaatcttcg aaggtggcta caaagcacac
      541 gcacccaagt gggaatccaa ggactttaga cctaacaaag tctccgaaac tggtaggact
      601 actaccacgt ctttgtcccc tgagctgatc cgctccacag cttcgtcctc gactgtgatg
      661 attcccaaat tgccagccgg caaaatgaat aaccgtgagc tcaaacccca gcctgacata
      721 gtcttgcttc cgttgcccac tgcctatgag ctagacagca caaagctgaa gagcccgcta
      781 atcacttccc ccatgttccg taatgtgccc acagcaaacc ccacggagcc gggaatcaga
      841 cgggttccgg gggcctcaga ggtggtccgt gagtc
//
LOCUS       KCLJ01002609             388 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 291243cal ultra-conserved element locus
            uce-7489, sequence.
ACCESSION   KCLJ01002609
VERSION     KCLJ01002609.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 388)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 388)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..388
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="291243cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>388
                     /note="ultra-conserved element locus uce-7489"
BASE COUNT          127 a           69 c           70 g          122 t
ORIGIN      
        1 tagctattgc tggcttgcca gagatcttga acttgagaaa ggttagacat cacaatgctg
       61 aagcagtttg tgagcatcag cagatttagc ttgtaatttc attgatctat gtgggcttgc
      121 tgtttgcaaa ccagctgctg cactgtttcc ccacagctac tgatctgagt agcattgatt
      181 ttttccctta cattaacata gcattacttc tttaatgggc attaaatgac tggatgtaaa
      241 tacaaacagg gcttcaacaa caaaagagac aaaaagcatt ggttcaaaga actctattaa
      301 taaaaaaatt aaaagcatga gttattgatc aagataaatg ctattttcca agaaataatt
      361 tcctcactgt gtttccaaaa tgttgcat
//
LOCUS       KCLJ01002610             671 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 291352cal ultra-conserved element locus
            uce-5297, sequence.
ACCESSION   KCLJ01002610
VERSION     KCLJ01002610.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 671)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 671)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..671
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="291352cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>671
                     /note="ultra-conserved element locus uce-5297"
BASE COUNT          160 a          141 c          128 g          242 t
ORIGIN      
        1 ctctgcacta gcattatact ttgatttgtt ttaacctgct tcatacagcg acttttcttg
       61 cattcaattc gggtgcaagt tgcaaccgat aagtgccaac agtgtttatt ttattgcgaa
      121 ccttattcag cctcatactt agttatgttt ccatgtggtt ttgtaatgtg gttttatttt
      181 actcctgtga ttagtttctg tttgttctaa tttctttttg actctttctt gaccttgagg
      241 tgaaaaatca cagaagatat attccctcaa tttaatgcca gtctgaggtg tttctcctgc
      301 atcatcagat caatgaaaag taaatagcct acatttcttg tttcacagtg cagtattgat
      361 ctttcttcag cttttgcttt gctttttccc tgcgccttgt gtctttcaac ccctgggacc
      421 aaagtgattg ccatagattg gacaagctaa caagcgcatg ataaggaact agtgttttgt
      481 ggtatactcg cattctcatg cctggtatat aaagcctgga cctctccgca tttaaagaga
      541 ggtgccattt tgtgtatggc acaagtcact atgaaaggca ccggagcagc agaggatttt
      601 attctccact ccaatctttt attcctgcag ctggtgccaa gctgggtaag gacattactc
      661 ctctgaaaag t
//
LOCUS       KCLJ01002611             693 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 291460cal ultra-conserved element locus
            uce-1941, sequence.
ACCESSION   KCLJ01002611
VERSION     KCLJ01002611.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 693)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 693)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..693
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="291460cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>693
                     /note="ultra-conserved element locus uce-1941"
BASE COUNT          217 a          125 c          125 g          226 t
ORIGIN      
        1 cagtgttaga gcttttgctg aaggtttacg agtctatgta aacagcacgt ctgccataag
       61 gagcactgaa gtctgtagaa tccttgtcta aaactgtcct ggcattaaag tttgctgtgc
      121 aaatatcaca taataccaga gacagctgaa atctcctatt taggaattta tggaacttat
      181 atgtttgcag gcgtcagaaa gtccttttta tacagcccca ctgcttcact gtacaatgtt
      241 aatgcactct gcttgaaaag ccgtaataaa ttatattttt aatgctctta ccctggcttt
      301 cttaagatgc atacattctt ggcaaacaat caataaatag ggtaatcatg agcagaggcc
      361 aaagaatttg ctgaagtgct gtttttccat ttttaataga taaagatcta acaatacgga
      421 ctgctgtgtc tgttcatttc aggatcaata tattctttgt tttcgccaaa ccgaggaaaa
      481 aataaatgat tgtacgataa atgttatgca tcagacacaa tgaaattcct ctgccttcta
      541 actttgtgcg tttaatagtc ttggttgcat tctgcacttt gcttagcaaa tacaagaaaa
      601 atctggatta taaacataac tggttatact aggaaaagta gaggctgttt tgccaaatta
      661 catgcagcat atttcgattt aaattagcta gcc
//
LOCUS       KCLJ01002612             582 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 291568cal ultra-conserved element locus
            uce-4546, sequence.
ACCESSION   KCLJ01002612
VERSION     KCLJ01002612.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 582)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 582)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..582
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="291568cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>582
                     /note="ultra-conserved element locus uce-4546"
BASE COUNT          169 a          115 c          125 g          173 t
ORIGIN      
        1 tggcatccct ctgtcccaga tccacctttc ccttggtgtg cagatgcaca attaaacact
       61 cagcagctaa agatgaatgt gctaaaagta ttttcattca tgtctgtggg agcaccccaa
      121 agagcaagga gatgctggac agtgataata gctaaggatc tgctccctgc ctttgtggag
      181 gacaatggat tttgtgaata ttctgcttcc tctccaggca gcgagctggt atggttaacc
      241 aaaattgttg agtaattgtt ctgtggttga gaacaaaatg ctgaattaaa ctgttcccag
      301 cacaataatt gtgtgattac agcatttatg ttcctggcca aaagaacagt cattaggttt
      361 ggaagactta ccaaaaccac agtcggaaaa aaaatgcaaa tcacatgtaa attgtcctct
      421 aatacctata gtggcttaaa aattgatcta ggagtgtggt atgtgtgtat ttaaaggcag
      481 ttgtgcattc aagaactcct tcagactagg aagaaaatac ccagagatta ttgatgttca
      541 ttgtgctgtg ctttccccct ctgctgagat cctgcttttc at
//
LOCUS       KCLJ01002613             671 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 291676cal ultra-conserved element locus
            uce-4782, sequence.
ACCESSION   KCLJ01002613
VERSION     KCLJ01002613.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 671)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 671)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..671
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="291676cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>671
                     /note="ultra-conserved element locus uce-4782"
BASE COUNT          179 a          125 c          164 g          203 t
ORIGIN      
        1 atggtactga gctctaaagg gctgctcaaa ggagctaatt tgatatgctt gatgaacaga
       61 ctgtgcctct gctttcttct gagaagttac ttgatccaag aagtcctgtg tggaggagga
      121 agaagaatga tttgcctcat cacctgaaaa gggaaaaggg tgctgagaat caccaaccat
      181 tagtccaaag tgagacttgt ctggagttgt tcttaatgga gagttcatcc ccgaccgaaa
      241 gctattgacg ggtatagatg tgtagacctt ctccatggaa ggaaatgctg gctgggttgt
      301 aagtgtctgg ttatcagtca caaaattaag gctcgggttg ttcaaatagg catcattttg
      361 gctagttctg tccaaagctt gctgtaaaaa ctttgaatat tcttgtaaca tactagcttt
      421 atctgatgag gaagcttgag agcttgttcc aaccgtctca gatggggtca cctcagatac
      481 ttcagcggaa ttgatggata tactagaggt cacttctgtg tcagccacgc tgaaagagat
      541 ctcatgctgt ccattagcct tgtgtgaata atgatctaac agagtttgca gtacctcatc
      601 tggaatgaca tttttgtcat ggttaccttt aatttcaaca ttcagtgcct gtgtgtccag
      661 tattgaggct g
//
LOCUS       KCLJ01002614             607 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 291786cal ultra-conserved element locus
            uce-8014, sequence.
ACCESSION   KCLJ01002614
VERSION     KCLJ01002614.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 607)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 607)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..607
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="291786cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>607
                     /note="ultra-conserved element locus uce-8014"
BASE COUNT          195 a          124 c          102 g          186 t
ORIGIN      
        1 gttcttcccc atcttccatc tgaaaatatg gttggaatat agatttaagc aggatgaagg
       61 attaaacaaa aaaaaaataa tgaaaagtgg aaatatgcac gaaaaagcat ggtcaattat
      121 attttgcgtt gtataaactt cacccagtct acgtgggttt taacatactt ccatgacttt
      181 aaataagaaa acatcttaaa gcacagccca tgggaaaccc aagcttgatt agttttacct
      241 tttagtatag cctgcagagt gtaaaacaca gcacatcaga attgaatttg tcatctccag
      301 accccacaag aattttagga actaagtggt taagaagcat cctggtactt ctctttgctt
      361 taatcacagt agaagttcca atttaaacat tcaggaaatc tcccttattt aaagcaatca
      421 actcattgct aacagggtct ggctttacgg tgtttaattt tttggcatca tgcaaaattt
      481 gattggttac agccatgcgt gaacaggtcc tctccctccc ccttctccct gggaaatgta
      541 aaatatcaga tctttgctgc atcattatca gccctgcaca tcctagtatc tgttctatta
      601 gtgcaaa
//
LOCUS       KCLJ01002615             634 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 291897cal ultra-conserved element locus
            uce-1896, sequence.
ACCESSION   KCLJ01002615
VERSION     KCLJ01002615.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 634)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 634)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..634
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="291897cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>634
                     /note="ultra-conserved element locus uce-1896"
BASE COUNT          223 a          114 c          139 g          158 t
ORIGIN      
        1 tttcagcaaa gcttccttct caaaaaatga gtggcagctg ccacaaacaa gttttgccat
       61 gtaatttaaa atagaacatt tgggtttttg cttttcaaaa tgggtgattt cctcctcgct
      121 ggtacaacca gccacagcaa ttccacttct gtctgcgtca cggcaccttt caaaaagaag
      181 aggtactacc tctgcgattg aagaattccc gagaatattt tccagataga gcaaagtgcc
      241 ttgggatatt gcctagcagc tctatgatgt gtgctatgtg gtctatgagg gagagaaaaa
      301 aaggatacgg gagtggaagg ggcagggaaa ggatgggata aaaaagaaga ggaaagaaac
      361 tggaattagt aaaaaatcag aaatagtttc aaatcaacaa tgtttgcagc aaatccatgc
      421 agaggtttcc aggatcagca gagctctggc atcattagta gcatttagga acaatgaatg
      481 atgcccacat taccactgca aagagcattt acaagcaaac aagcatgaaa atggacaggt
      541 atacagatgg aagcaggagt taactctgat ttgaattagt aattgcctaa tacaaataaa
      601 aatacacaat gtaaacatta ttccagtgtc actc
//
LOCUS       KCLJ01002616             694 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 292009cal ultra-conserved element locus
            uce-3989, sequence.
ACCESSION   KCLJ01002616
VERSION     KCLJ01002616.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 694)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 694)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..694
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="292009cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>694
                     /note="ultra-conserved element locus uce-3989"
BASE COUNT          237 a          142 c          103 g          212 t
ORIGIN      
        1 aaaaataaat gtactgaatt tcctatttga gaaccaaact tcaaattgtg agtaaaacac
       61 aaaatactct ttttacccca cagtgcccaa atccacgtac acatgggcac gcacatacaa
      121 atatccatac gcaaacacgt cagcctgtga gggtatctac cctgtagaca attcaatcaa
      181 tctctcaagt gacactcaca cgtgcctgca cacacaaaag cagatgtggc attaagattt
      241 acaaagttat tgaaactttt aacaagtaaa atgcatcttt acttagctac accagaatga
      301 ggaataaagg ggtttacata tgttccaatt ctaaacctat caatcaaacc catgttattc
      361 ctttgggagc ttatttacat gcatatttat cagcctcaca tgctaattcc ctgctgtttt
      421 atgcctgcga ggcatgttta tgagtcataa ttgttgatct catttgatgt atttcactga
      481 agtaagacat tattcagtta tgtggcctaa tgtcaatgaa ttacgatgac ctgatcttcg
      541 aaatgcaact tgctctttaa tttttattag agcattactt attcagaaga agaaatacaa
      601 aatggaagat catttttata gccatttttt gaaacactcc tccctacctc taggcaaagt
      661 tttaaaagtg taattcataa acaccaaagg aaaa
//
LOCUS       KCLJ01002617             701 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 292119cal ultra-conserved element locus
            uce-903, sequence.
ACCESSION   KCLJ01002617
VERSION     KCLJ01002617.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 701)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 701)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..701
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="292119cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>701
                     /note="ultra-conserved element locus uce-903"
BASE COUNT          227 a          147 c          128 g          199 t
ORIGIN      
        1 aagaaatcct ttcaagagat ttttattggt aaaaattttc agatgcaaac ttgtctggtt
       61 ttgccttatt tgcttacatt caattaacaa aatacaagcc aggtttggga aaggaattag
      121 ttcctccaaa caaaaaacta caggcattca acagctccaa gtaaaatggg gccttttgtc
      181 ttaaagacca gaaatgcaac agaaacaaaa aaaatgaaaa tgcaggtaca ggaattatgt
      241 atttcatact gaataattat ttctgtactg cccgtaaatc ctctctggta agctgtgcat
      301 ctaaaactca tcgaactgcc aaggggtaaa cgcagctcca tccatcacac agccacttga
      361 caaatacatt ccataataga agtttatttt tatgggaggc tgaatcaagg actttcccat
      421 gcatacaaaa acttgtcaaa attatttatg agtcttgctg agacacacaa tatgtcatat
      481 caaactccta ttttccttcc aagcacagac tgtcaatatc tctgctacta tcaataatgt
      541 ggaacaccgc tgctataggc cctcaggatt ttgaggtcat ttgcccatcc taggctgctg
      601 ccagacgctg tctctagctg caatgcagct gaggagagct gtatttacag cctctatgag
      661 gtgtagttaa ggtaagcact ggggactgca atcaaaggct t
//
LOCUS       KCLJ01002618             351 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 292227cal ultra-conserved element locus
            uce-3248, sequence.
ACCESSION   KCLJ01002618
VERSION     KCLJ01002618.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 351)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 351)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..351
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="292227cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>351
                     /note="ultra-conserved element locus uce-3248"
BASE COUNT           84 a           73 c           78 g          116 t
ORIGIN      
        1 ccttgtctcc ttgctgcagg ttttgctcag gagttagcca ctcaggaatt cctagtgcct
       61 gactgagcag taatttagca agctctcttg tgctcttttc ctgtcagcat taacatgtca
      121 attcatttta atagtctggg catgcgcaga ttttctcagt aggcatccca tgagcccacc
      181 ccgtggtgca gaaatgtgtt atagcttgtc tcaggccaca gagacttcag caggttgatt
      241 ttcattatgg ccaagcgtat ttgttaagac tttaaaatat taaaatgtgt ctggttggta
      301 atttatgacc tgagcacaga agtggtaagg gacttctttg catgatatca t
//
LOCUS       KCLJ01002619             537 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 292333cal ultra-conserved element locus
            uce-5348, sequence.
ACCESSION   KCLJ01002619
VERSION     KCLJ01002619.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 537)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 537)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..537
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="292333cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>537
                     /note="ultra-conserved element locus uce-5348"
BASE COUNT          191 a           92 c           88 g          166 t
ORIGIN      
        1 tacctggcat catgtttcta ccaaaccaaa cacagataat ttactttaat tttggtgaca
       61 tacgtaatga aacagataga agcctatcaa gtactattct tctgctgata agaccataac
      121 atcaatttaa ttatgtcatg tgactgcttc aaacaattta gatatcagac tgaagcttta
      181 aactcaaatg gttttctcaa taagcaaaaa ttttactgct gcaactttca gtgtgaaaag
      241 ggcttgcaaa catttttgtt aattatgtat tacagctgtc cttcataaag ttaattacta
      301 atagctgaaa ggcaatagac tctatttgca tatgtacatg aaaggcatga catatgcaaa
      361 aatatgattt taattagcat tccatgatat gaagggctac aaatcaaact ggcatgtttt
      421 tttaacatta aacgctgaat tcatctggac gtgtttgccg taatggacaa tggaaggact
      481 gtaaaacacc agcactatgg ggtataagag ccacaaaagc aaagacacag tactttt
//
LOCUS       KCLJ01002620             678 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 292439cal ultra-conserved element locus
            uce-5119, sequence.
ACCESSION   KCLJ01002620
VERSION     KCLJ01002620.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 678)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 678)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..678
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="292439cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>678
                     /note="ultra-conserved element locus uce-5119"
BASE COUNT          172 a          136 c          126 g          244 t
ORIGIN      
        1 ataaattaac atctttgcta gcactttctg acatcatttt gtgttaactt aagaactgat
       61 agctcgattt tttttcagat attttgatgg catgacaaat cagaaagaag aggatgtact
      121 gtatgactag acacaagatc agttctgttt gtggattaca ttttcagtaa gatgtatgga
      181 tctatttttt ccttgttctt aaatatagat catgagactt gactgaggca atatacatat
      241 catccatcca tctatggcga actacagcca tgcagctgac aacattttgc aaaatctctc
      301 tcctttaaca gcttttctga aactgacttc actgggtttc ataataggag tcagtgtggt
      361 gggtaacctt ctgatctcca ttttgctagt caaagataag accttgcata gagctcctta
      421 ctacttcctg ttggatcttt gctgctcaga tatcctcaga tctgcaattt gtttcccttt
      481 tgttttcacc tcggtaaaaa atggctctac gtggacgtat gggactctta cttgcaaagt
      541 gattgccttt ttgggggttt tgtcctgctt tcacactgct ttcatgttat tctgcataag
      601 cgtcacgaga tacttagcta ttgcccacca ccgtttttat acgaagagac tgaccttctg
      661 gacttgtttg gctgttat
//
LOCUS       KCLJ01002621             648 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 292551cal ultra-conserved element locus
            uce-6875, sequence.
ACCESSION   KCLJ01002621
VERSION     KCLJ01002621.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 648)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 648)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..648
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="292551cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>648
                     /note="ultra-conserved element locus uce-6875"
BASE COUNT          193 a          137 c          132 g          186 t
ORIGIN      
        1 aaaaaatcat tttcccagga gaatgttata tctgtgtaaa tcgataatta ctgtatttca
       61 catgcccctt ttaattactt aatgtctgag attaaaattc aacagcctct ctcaaagaga
      121 aagtgcttta atatctgaag tgctgctcct gtaaattggc atctgaaaga taaaaaaggg
      181 gcatatcctt cctaagtgac tgcaatacca acgagctgca ccgacacaca gacctcccac
      241 attcttgata ggatgttttc tagcagagtg atccacaaat attatcattc aatgacaata
      301 cagttttatc aaggtacgtc tcaatccacg ggatgcaagc cccacacaac agacggaaga
      361 tttggcgcgg cgatgcgcgc acggcgtgtg ttacttactg gttattgcag tggtcatacc
      421 gagtcccgta tggcgctaca ttaacgaatg gcatgcaagc accttctgtt gaaacatctg
      481 cgacagggaa atttcaggca tttttccaga tatgtgctct cgaccaaatt ttcattaggg
      541 ctataaaacc tggcaggcag cattgttgtg tatgattttt taataaactg ggacatgcct
      601 ttgttagagg agtgaagaaa agggctcttc agagacttct tcctatta
//
LOCUS       KCLJ01002622             463 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 292662cal ultra-conserved element locus
            uce-4807, sequence.
ACCESSION   KCLJ01002622
VERSION     KCLJ01002622.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 463)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 463)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..463
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="292662cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>463
                     /note="ultra-conserved element locus uce-4807"
BASE COUNT          141 a          113 c           90 g          119 t
ORIGIN      
        1 tttgtgctct tgtcagattt tattcctgaa cccagatgga cctgcttatt gtgattactc
       61 acacatcatt gtaaggtgaa atacacagct tcaccccact gacaaagaaa aataaatagg
      121 actctctccc caccacccac acccactccc acacttccct ctgaacttga aataaaaaac
      181 ctgcagaaag attcccgatg gctttgtcag ggagggggga tggtgaggat tggtacagta
      241 tataacatcg cagctctcct ggatcagtca cgcttcctaa ttcaataagg tgagaaggag
      301 cataatttga tcatatttgt tttgcatcac tgcaaaaaca gaaaatgagg ggctgcagag
      361 ccgcaccaat ttacttcatc cgaccttgat taaaagaaaa ttaattgccg catctctctg
      421 gatatctcag gcagcagcca atggctttcc agaatggcac aag
//
LOCUS       KCLJ01002623             872 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 292770cal ultra-conserved element locus
            uce-2020, sequence.
ACCESSION   KCLJ01002623
VERSION     KCLJ01002623.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 872)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 872)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..872
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="292770cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>872
                     /note="ultra-conserved element locus uce-2020"
BASE COUNT          206 a          185 c          201 g          280 t
ORIGIN      
        1 gtttactctt taggttttcc attcttttca gcttgtgcat tgttcctgtg taggcccctc
       61 tggatgtgag ttgtgaagtc atacttgtcc gtgcaaagat gctggcaaat gctgcactgg
      121 aaaggtccac tgtcaccatg gcaactcata tgcaacgcat acatcacttc atccagaaag
      181 acaatgccac agtgcacaca cttggtagaa agttcatctt gggtacttct atcaactttc
      241 tctgttttta ctacattcaa gggaccttca ttttttacat ttggtggtgc cttactcttt
      301 tccttggagg caccatttgc agttggccca ggtctggaat gctttatcgc caaatctaga
      361 ggaatgtcat tgtctgatcc gacagctgaa aaatgaggag gcagattaaa ggtgggataa
      421 ggcacatagt tttggcaagg atttggtagg ccaggcacat gactcaagta gtgtggattc
      481 ccaggaacag acagcttata tttactccag aatctcagcc agtcagcttc actctgaaag
      541 tcattgtgta caaacggaag tccaaagagt gggtactggt atttttcaat agggcttcca
      601 ggtggagaat agtttggatg tttcacaggt ctcatgtatt tttctatcgg gctgcctctc
      661 tctgagcttc ctttcccttc tgatatcgat gaactgtttc ctgggtctcc agtactttcc
      721 tgaggacttt ttatctgaat gtgcaaaggt tgcatccttt tgtgaatatc cagagtttgg
      781 ctgaccaata ttggctgctg agcagaatgg cttttagtca atgaacctgg ggcctcatat
      841 ttactgaggc tgggaagctg aatttctctc tg
//
LOCUS       KCLJ01002624             768 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 292880cal ultra-conserved element locus
            uce-7732, sequence.
ACCESSION   KCLJ01002624
VERSION     KCLJ01002624.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 768)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 768)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..768
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="292880cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>768
                     /note="ultra-conserved element locus uce-7732"
BASE COUNT          179 a          174 c          164 g          251 t
ORIGIN      
        1 ccgagagagg gacaggcata tggcactttt actttccact ttttatttga tgatagttct
       61 cttatcacag cctctcaccg attcccctgc ctcatgcccg cttcctcctt tgccatatct
      121 accattgttc cccttgtatc gtcttacttg ggatcaagtg attctctcca gcgcaaaaat
      181 aagaagacgt attctttttc agcctcttct gatctcccaa gctaattggc tcaggtgtaa
      241 accaagccag cagggctgtg actttgatgt gacactttag agcagcgcac ctggtaacat
      301 ccctgtttgt gtgtcaaata gcagccggcc tggcctgctg ctcaaaccca gctaataaaa
      361 acgctagtaa tcacgttgta ttacaaggct caaattcatg ctgttacttt attgcaaggt
      421 tgtcattaat tttgcagggt gaacctggaa tccgatccga cctgttttta atgagtgtgg
      481 gtctgtgtgg agctgtgtaa gtgagtgaca gaaaggtgac tgccagctgt ttcttcttta
      541 catatggcgt taccctttgc tttgatcaat aatgctgttt cactttaaaa agaaactcat
      601 tttgtaagga tgcagaagag gggccttcct acctcccttg tccttgtggt ttagttgtaa
      661 actatacaca attagggaaa ggtcagtcac cagtaagtgc tagggattgt ttccctcttt
      721 tggacccgtc attagttgtc ttgtcttgca atggtatttg gtagaatt
//
LOCUS       KCLJ01002625             614 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 292992cal ultra-conserved element locus
            uce-2662, sequence.
ACCESSION   KCLJ01002625
VERSION     KCLJ01002625.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 614)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 614)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..614
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="292992cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>614
                     /note="ultra-conserved element locus uce-2662"
BASE COUNT          178 a          111 c          124 g          201 t
ORIGIN      
        1 ccaggaatct gacgtagaaa tcatgttctt aaaaatctgc tgtttctcta aataatcaaa
       61 attctttttt aattatgcaa attcaagttg ccgaggaaca attgcttgat tagaccagtt
      121 ggtactgacc taataaatta ttttgaatat ttttcacagg aaattgattt aattgaagct
      181 tttgttagcc cctgcaaatg cactcggttc atgccacagc acccaggaat ttataaatgg
      241 gctcagaatg ttgttcaggc accagaaaat aaacctccga gctatttact acctccatga
      301 tatataaagt ttgcagtttt gattttgtgt gattatgttc agcaatggtg acctttagag
      361 gcaacaatat tgaagtgtaa tgaggagatg tttgatcact ggtgtacaat gaggagttgg
      421 cgtgacttct ccattccttc ctggaatctg tgaaatccag ctgacaggct ttaaccttta
      481 gactgctgag ggctgagaat gtgcagggat ttagcctgtt tatacaccag ggtgcctata
      541 tgaaatttta tatcatttct tccgtcactg catgcgggga tattgcataa taacagccac
      601 tgctggacaa tatt
//
LOCUS       KCLJ01002626             431 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 293101cal ultra-conserved element locus
            uce-5956, sequence.
ACCESSION   KCLJ01002626
VERSION     KCLJ01002626.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 431)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 431)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..431
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="293101cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>431
                     /note="ultra-conserved element locus uce-5956"
BASE COUNT          143 a           72 c           66 g          150 t
ORIGIN      
        1 aaaaattttg ataatgatct caccaaaatt tagaaagtaa gaaagaagat attccatatt
       61 gatgtattaa actaaaaaat gttagcatta atgaatctct tacattctgg attttttgct
      121 agtggagtaa acctaattaa ttatgtctgt ttgatgtcac tgaaaccaaa cagtaaattc
      181 aataatctct ttacattttc accatttaac ctcctgcagg ctccctaatg tctattcaga
      241 tctatattaa attaagtacc aatgctaatg aagggcaata aatgtggctg tcagtagatt
      301 tttctttcat taagcacatt atcctcttac tgagctgtaa atgagtaaac attagttttg
      361 ctaaaccatg cgacaggatg aaaatttttt aattgcgccc ctcaagccat tgggggttct
      421 cagttctggt t
//
LOCUS       KCLJ01002627             355 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 293209cal ultra-conserved element locus
            uce-995, sequence.
ACCESSION   KCLJ01002627
VERSION     KCLJ01002627.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 355)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 355)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..355
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="293209cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>355
                     /note="ultra-conserved element locus uce-995"
BASE COUNT          117 a           82 c           57 g           99 t
ORIGIN      
        1 tgctgcttgc acaaaaggag agtttatgtt aatgcccaaa gaaaagtgta gtgatcagta
       61 tccatcatct ttccaactgc cttgtcacta catcaattaa tacaattgag caaaaaatgt
      121 cacaagccca gtggaaaaac ctttacacag cctttcaggg ggaagtttac tcccagcttt
      181 ttttcccttg cattagctcc tgtcatccac aaaacaacag aacccagtgg tgtcaattat
      241 atttgattga ctgagtaaag cacacacaca aataagcaaa aacaatggac acaaaaatct
      301 atatatgact ccccttgtca gtgagaatgc ttgtcttctc cattttcatg ctgca
//
LOCUS       KCLJ01002628             754 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 293311cal ultra-conserved element locus
            uce-2103, sequence.
ACCESSION   KCLJ01002628
VERSION     KCLJ01002628.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 754)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 754)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..754
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="293311cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>754
                     /note="ultra-conserved element locus uce-2103"
BASE COUNT          245 a          135 c          140 g          234 t
ORIGIN      
        1 catttatcgt tcagtttaga aggcagagca gctgagtcat aaaagcagcc cacaaaagat
       61 attttaaagc atgtataatg actaaattgc ttgaaataaa ttagccctga aaataaacat
      121 attttgtaca gcctatgtaa accaaatttc ttctccctgt aaattgcttg gattaagtgg
      181 gagcttgtgt ttgacaagag catacatttg cttcattact aagtgcaggt taaaaagggt
      241 taataaacta taagatatca ttgctaagta aatgagtcct gcacccgaag agcaagttag
      301 aaagaaatgc agagcctgtg ttgtaatgct aacaggcaat taacaaactc atgggtgtta
      361 attatcttca tactgtatca tgttcaatta gctcagcccc tgcaacaaag gcaaccatga
      421 gcaattgctt tgataggcgt acagtacttc atttgtagtt aatcggttta agccttgcag
      481 ttgctaggct accccagtct ccagaggtaa aaagctgcac agatgcacta tgtttaaatg
      541 actacagaga actgtttaaa ctcaaaccat gtataactct ttattgattt ttcagagaag
      601 atctcagctc tgatgataag gttttgatat attttcctgc tacagccggt tccttggagt
      661 attgcagaaa aaatctgtca atatgcttct attatgatct cttgatctgt ggctataaaa
      721 acctttagct gcagccctta ttataaaata atgg
//
LOCUS       KCLJ01002629             482 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 293423cal ultra-conserved element locus
            uce-4337, sequence.
ACCESSION   KCLJ01002629
VERSION     KCLJ01002629.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 482)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 482)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..482
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="293423cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>482
                     /note="ultra-conserved element locus uce-4337"
BASE COUNT          151 a          114 c          101 g          116 t
ORIGIN      
        1 aggacctccc aactcacttg gcaccacagg gttaatctca cacatttaaa atcctacctc
       61 aaacaagaat aattgtagca agaaccaagg tcttagggta gctttggtaa gaccacgctg
      121 cttcttcaga acacaacagt aaaaaagcca tgcaaatgga gatgaatgga gcacaagcca
      181 ccgaggtaat taaaaatgta ttttccatct cctagtaatt gaattgtgta caagctgcaa
      241 gttaatgagg tcatctaccc tcgagcactg acaggaaagc aggaataatt atctttcaat
      301 tttttcttat gtagcaatta attttcacca ttcgcctgca gctcccactt ccctccctcc
      361 agtcagtcaa agtcagggct aagctgaatt gacaagcaat tgatacagtg gcagcacgga
      421 gccacccagg caggcaaggt aatcaagggg ctgcagctgt tgagggctga gagcttccag
      481 gt
//
LOCUS       KCLJ01002630             835 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 293523cal ultra-conserved element locus
            uce-1956, sequence.
ACCESSION   KCLJ01002630
VERSION     KCLJ01002630.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 835)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 835)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..835
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="293523cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>835
                     /note="ultra-conserved element locus uce-1956"
BASE COUNT          245 a          151 c          156 g          283 t
ORIGIN      
        1 ggctgatgaa aaatttccca gagagatctc aggtcaggtt tacataagct aaacaggaaa
       61 tgattgccac cattcacatt aaatcctaaa tgttttgtgt aacttcatct acattttatg
      121 ttcctgcacg tctctctgtc tctttcagct gatgaaattc cacacttcct tagattagag
      181 aaataagttc atgtttcaca gtttgttgtt cttgctaagc tatgttattt aatagacaat
      241 aaaaagttcc ttttgattgt ttaaatttta catactttgt aaatttttat gatacctagg
      301 ggtttgttac tgcttttccc tatggactac taatggaagt tagcctgtct agcccatgtg
      361 ctagatgctg ttaggataaa actgcctttg actttcacac ctctcagggg acgagtaatt
      421 gttgtgttca aacagcctgt aattgtgatc ccgctggctt tctcagtacg cttctggcta
      481 ttagaatcat taaacaactc agcacctgtt aacagcattg taaatattca accctgcttg
      541 tgtgcaggtt gagtccaata taggagaagg cttacagagc ccagcctcat aaattagagc
      601 ttctgacaag tcaattattg tgaaactggg cttcactgtg aaataaatga aatggtgtgc
      661 tgataaaaag gtaggctgtc tgtttatagc aaaggggaac taatgactag atgattcaat
      721 gcagtgagca tgaaactgca ttgtttttat tctttatctg taattaaata gttaggcaat
      781 attgcttcat agaggaactc atttttatac ttggaacata ccaacagaat tcaac
//
LOCUS       KCLJ01002631             745 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 293637cal ultra-conserved element locus
            uce-5155, sequence.
ACCESSION   KCLJ01002631
VERSION     KCLJ01002631.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 745)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 745)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..745
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="293637cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>745
                     /note="ultra-conserved element locus uce-5155"
BASE COUNT          211 a          162 c          148 g          224 t
ORIGIN      
        1 aaaaaaatcc aaagaggtgt ttgttcttga aggaaagcat tcaaattgcc acctagttct
       61 gctatttggt tcctttgagt atggattcag gcttgatttt cagataccga ttctgcagtt
      121 gatctcattt gtttcttcaa aacaaaagaa cattctgcag tccacccctg cacactgttt
      181 tactaaggta aatgatcaaa tccaaatcct gggttaatga gtgccaatca tagctccagc
      241 ccccgtttca ggcttggcaa caagttcccc gagccttagc aaacaattat cattcagcta
      301 ctgtagaaat tgattcttgg gttgacgaga gcagtcctcc cttggctggt aaggtcctgc
      361 catgggaagc aattactgca agatgccagc tgacagactc attccgtgga aagtcaggtt
      421 gtcttgatcc tcaggcactc tctaggcaaa ttgtatcctt acactcatct caaacctctt
      481 acgaactgtt ggcttctatc aggaaaaatg gattgttccc tttgtttctg tggcatttga
      541 tagaataaat ctggacatcc tgcctgcaca ataaggagat ttaattttaa aattctcaca
      601 ccaaaatgct tcagtatgat ggaatcataa agcaatgaag aatggtctag ggagcagtaa
      661 tgcagcacag ctagtagggc tgtgcataaa gagaccctta gcaatggctt gtctttagta
      721 attgtaattt tctttccccc ctaat
//
LOCUS       KCLJ01002632             512 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 293749cal ultra-conserved element locus
            uce-1535, sequence.
ACCESSION   KCLJ01002632
VERSION     KCLJ01002632.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 512)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 512)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..512
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="293749cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>512
                     /note="ultra-conserved element locus uce-1535"
BASE COUNT          145 a           89 c           91 g          187 t
ORIGIN      
        1 tctaatagtt gtcaaattaa tttctaccaa ttgtgtgtaa aatcgttgcc aaagtctact
       61 ttgggataga gagacataac ttagttatgg gcaccctgct gacttaggaa aataagcctt
      121 actacccagt caggcaggat gttaaatcat ttgtgattac taatgtctaa gtactttgtc
      181 attgccaagc tctcattttc catcagagca attctaattg atttaaatgg tctgtttcgc
      241 cttggtgcac gcatgatcac gtcgtaagtg gtctttagga ctattttaat tgccaaggat
      301 gtttttcctt aagaaaatct ctgtgcccag agcagaacaa attattattg caatctacaa
      361 atacacaaac attgtttttc tcccctctct gcatgttttg ttacaccaga ctctcttgtg
      421 ttttgggggg gttcggtctt aatttatgca aaattaattg atatatcttt tataattgat
      481 gtgctgtaaa attaatgagt aatttatgta at
//
LOCUS       KCLJ01002633             661 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 293859cal ultra-conserved element locus
            uce-3723, sequence.
ACCESSION   KCLJ01002633
VERSION     KCLJ01002633.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 661)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 661)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..661
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="293859cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>661
                     /note="ultra-conserved element locus uce-3723"
BASE COUNT          179 a          137 c          127 g          218 t
ORIGIN      
        1 cagaacaaca ttagactttg catcactgat cctaagctgg tttaatgtga atttgttggg
       61 acatgaggtt ttgaaactgg agtaaagctg aaagcatggc tgcaaagcaa agaaccccaa
      121 ctttgtttag atacttaact gctaaccaac ctgcatgtaa aaaggaaatt gtcagttttt
      181 gtggaaaaga cacctctaac ctttcccttt gctagcacgg caattctact ctgttttcca
      241 ctctctttgg cctaaccttt gcttgtgatg catttgagca tgtagaaatt aagggggttt
      301 tgctcttaac tttggtagtt caaaaatggg gcacagatga agttgctgct tggctggatc
      361 tgctcagttt gggagagtac aaagaaatct tcatcagcca tgacatccga ggctctgagc
      421 ttttacatct ggaaaggcga gaccttaagg tatttccttt gtgctacttt tctgctattg
      481 accattttct ttgacaaaac aacaaccaac ttttcttctt tccctgcact tgtcattgct
      541 tgtagcttgg cttacactgt gcaaatatgc aataaactaa tatgcgctgt ccttgggcct
      601 actttctgaa ttgctgactt gaactcacaa ctaaaaatat ctgttttatc caaaatttct
      661 t
//
LOCUS       KCLJ01002634             298 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 293972cal ultra-conserved element locus
            uce-5211, sequence.
ACCESSION   KCLJ01002634
VERSION     KCLJ01002634.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 298)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 298)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..298
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="293972cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>298
                     /note="ultra-conserved element locus uce-5211"
BASE COUNT           94 a           59 c           64 g           81 t
ORIGIN      
        1 gtgaaccatt ctattaatac caatcaaatt gagaaaatga tcaaatgaaa ttgcattttg
       61 agaatcataa gctgtgtaat gcctattctg ttaaattgag gcccataatt gcttctccac
      121 tgaaaagata caacaaaggc agcaatcatg gcatgtcatt atcccagact ggcaaaccag
      181 cctctgcagg gaggacttca aagccttgtg gttctcgaat tgcatttggc tgctattgtt
      241 gaagcacagg caatcttgat taggtgttta caccgaggga aggctcagtg cacagaga
//
LOCUS       KCLJ01002635             622 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 294070cal ultra-conserved element locus
            uce-4829, sequence.
ACCESSION   KCLJ01002635
VERSION     KCLJ01002635.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 622)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 622)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..622
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="294070cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>622
                     /note="ultra-conserved element locus uce-4829"
BASE COUNT          193 a          132 c          113 g          184 t
ORIGIN      
        1 aaccaataca atcagcttca atgctaaaga ccttgttcct tttaatttaa ttaattcacc
       61 taattctttt attgttattc aactttgcac cctgatttgc tattttcaaa tccatttcct
      121 ttcttgttca aagcagtcag ttaacttgga actcttgtag caggaactca aaactgagtg
      181 atgtaagcaa gaaatagaaa tgccagagcc accgaggaga agacatgcgg cattgcttac
      241 ttaaagcccc atcctgtccc cccaaggaca attgctgcta ccaggatggc accagcgatg
      301 gagcctatta taagattggt ggcactagga cctgtgataa aggattaggg taagacataa
      361 gaaccaacga cttcattcac agtttgtgaa gcatctgaag gaaacaattc actagacagt
      421 ctcaacaagt ccaacttaac ttacttttct ttaacaatag agctgttggt ctctgcattg
      481 tgctatgctg acttctacca aacctagtat tagacagtga attccattgt aacttactcc
      541 attatctgct tatgaacagt cagctgagga cactagatag ctgtgaataa ttccttaact
      601 tgggaaaagg atgaatgctg ta
//
LOCUS       KCLJ01002636             566 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 294173cal ultra-conserved element locus
            uce-3043, sequence.
ACCESSION   KCLJ01002636
VERSION     KCLJ01002636.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 566)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 566)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..566
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="294173cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>566
                     /note="ultra-conserved element locus uce-3043"
BASE COUNT          158 a          122 c          104 g          182 t
ORIGIN      
        1 tctagccact aaaattagta ttaagagaca cagaaagctc agtggagttt tcccagttta
       61 tcctgcggct aatcttttta tatccttctt taaaatcagg gggaggggct ggcatgtcta
      121 aactcctaac atatgtgctt cttatccaac atacagtagc ttaggacttt tcaaaaacac
      181 agaacccctg aatccaataa aattgcaaat ttcactgtat ttcacaatat cctaaataaa
      241 catgaacagc gtgcatttct ctttctggca tcaaatatta atctgtccgt ggtcggaaat
      301 gtgctttcca tcttgtgtgc gctcacattg ggtaaacact tgggagattg ctattccaga
      361 cctttcattc tctcctagag tcaagagcat gacaaatttt tctcctaatt acacctgcca
      421 ctgtttgcct tctaatactg taaatcctcc atcacatagt ttttcagatt caggattagg
      481 ttccgtctct gtcatacaaa tgactggagg tgcagtgtgc agttagcaat gcacattagg
      541 aatgtttagg gtgggtctgt gtgaac
//
LOCUS       KCLJ01002637             472 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 294283cal ultra-conserved element locus
            uce-1143, sequence.
ACCESSION   KCLJ01002637
VERSION     KCLJ01002637.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 472)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 472)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..472
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="294283cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>472
                     /note="ultra-conserved element locus uce-1143"
BASE COUNT          138 a           80 c          116 g          138 t
ORIGIN      
        1 tttgggttca aggttgagct ggagacattt cctggcagaa tgtatatccc ctgatcacac
       61 ctttaggaga ttatcccatc attaaatatt tgtaggataa caggagaagc ctaatttagt
      121 ttttgtttct ttttctctgt ggtttaatca cagatgaaag agactaatag cactacagag
      181 ctttctggtg atcaaaggcc aatcaatcct ctttgtggag taattaacta tttgctaaac
      241 ttgcagaatt gatttccatt tagggctaag agagagggtt ttaaatgaag accgatttac
      301 caggcatgag gagggaatct cagcactgat gccaggagat actcagagtg atgaattgga
      361 gcctgctaat tggaggatga aaaatacagc tggaatctgg ccccgtttgc tcctgctttg
      421 gtggaagaca ggaaaaggga aatcaggctg agaacctgac agatggcttt gt
//
LOCUS       KCLJ01002638             499 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 294392cal ultra-conserved element locus
            uce-3744, sequence.
ACCESSION   KCLJ01002638
VERSION     KCLJ01002638.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 499)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 499)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..499
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="294392cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>499
                     /note="ultra-conserved element locus uce-3744"
BASE COUNT          165 a           96 c           92 g          146 t
ORIGIN      
        1 tgacagtttt aaaaatcact taaaatccac ataaaagtac agtatgtggg attcaaataa
       61 acacaagtgg cctactaatg cactaacgtg tgtgtaatta ttttaaaatc tggttgcaca
      121 acaatgaact ctgcttttca tcttaatctc atggaggaga agagatttct gtggtcttgg
      181 taaaatgcaa tccacgccag gcttggacta gtctggccac ccaggtttgc cttttcatat
      241 atctgataga tgtgttttga caagttatat taagtacaaa gcaggccacc agagcagcat
      301 gtggagttga tatagacaga gacagaaagg caaataacag tatgaacaca cttttgtagg
      361 cagtatttgc cataaccgag tatcccccca tacatcatat taccacactt catgacaaca
      421 taagaaacag agtttaaagg ctttcaaaaa gcaatatttt atgcaggatt tacagtcttt
      481 gcatctccct tatctgtgt
//
LOCUS       KCLJ01002639             543 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 294500cal ultra-conserved element locus
            uce-6031, sequence.
ACCESSION   KCLJ01002639
VERSION     KCLJ01002639.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 543)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 543)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..543
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="294500cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>543
                     /note="ultra-conserved element locus uce-6031"
BASE COUNT          181 a          117 c           92 g          153 t
ORIGIN      
        1 ctttctaaat ttaaaggatt gagcaccact tactacatga gactgaatat atgcattttt
       61 aaatggtact tagacatgag tggcttaaat aaaaaaggct tacacattgc caatataagt
      121 tacaaattca aacattcggg catgaaaatc ctttctctaa gttgttttca agcttcatcc
      181 ttttttctgt aataactaaa gcaaagccac agtagctgca gccatttgca tctaaggaag
      241 agatgttttg ctttggtgat atagttaatg agtctaaaaa tattcagtat aataattctg
      301 tcaaagcccc cacagtctcc tcaatgagca gaagcctgca ggattccaat ggggagccaa
      361 gtaatgagct ctcagcattc gctcccacac cgtccagacg aaatatactc gggcctccac
      421 ggttccacat cattagcaac atgaaacaaa gacacatgct tgactttaat aagcgactaa
      481 agttgctggc ttattaggct gtcactgcac ataaactcta tgacaaaaca gttccctaca
      541 aaa
//
LOCUS       KCLJ01002640             661 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 294611cal ultra-conserved element locus
            uce-5528, sequence.
ACCESSION   KCLJ01002640
VERSION     KCLJ01002640.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 661)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 661)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..661
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="294611cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>661
                     /note="ultra-conserved element locus uce-5528"
BASE COUNT          205 a          113 c          130 g          213 t
ORIGIN      
        1 gaattattta gcatacaaat aaaccagcaa agaagcctaa gtaggccaat atgaactaac
       61 tcgattgaaa tattcatctg taaataactt ttcaatctgc tgctttcacg tacaaatact
      121 acatggaaca ttagacacaa ctagcttcta gggatattta ggctcactgg agagcaattt
      181 ttatgtctac tggcatctgt gggtagtgat atggactgac tgttaatata accaacataa
      241 aatttatgtg aacactcagt gcaatagcaa cacactgtca gacagctggt ggttgatgcg
      301 tagcacatgc ggattttata tgcactgtgt aaactaacct ttgcagaaaa gatttagcag
      361 gtttattagt ttaggaaatc gctgtaatta tggataattc ataatggccc cttatccatt
      421 ctgtagcaat agctgcttta atttcgactc tgtttctttg agccataaat aagtgtgctg
      481 atatcttctg cacagatgtg gtattcaacc tgttcaagtt ggttgagttc tgcttgtgtt
      541 ttaatgctag tagataagct cataaaaggc actttgcttg aaataaattg aagcttgaaa
      601 gttctgaaac ttagtagctc ctttggagag ggtagactca gaaattttcc gtcagagatc
      661 t
//
LOCUS       KCLJ01002641             671 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 294717cal ultra-conserved element locus
            uce-6471, sequence.
ACCESSION   KCLJ01002641
VERSION     KCLJ01002641.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 671)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 671)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..671
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="294717cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>671
                     /note="ultra-conserved element locus uce-6471"
BASE COUNT          216 a          110 c          108 g          237 t
ORIGIN      
        1 tagtgaaata taatactgtt gtccagggaa gattataaaa atggaagagc tcaattactt
       61 tgtctcagcc atttttctta aggtgctaat ttgctaaagc atttctgtat tatttcatat
      121 acagtattgt attctggtat tggataagct tttatgaaga gctttaaata tatcactagt
      181 aaatgtttac tcagtgtttt gtgtttgatc ttttttgtac aatccttaca ccaaagctgg
      241 aatttatttt caatgactac atataaatgc aacacacgct ctgtgtccta acagatgcca
      301 tctgtaaaag catttacttt aaattagtgg aataagtaat caaaagggct ttgtacttaa
      361 tgcagaactt ttggtgacta ttaaatactc attagagggt gtttttgctg tatgactgtc
      421 aaaatcagca ggacgtttat gttagatttc ctgagtgggt caagattgaa tatgatttta
      481 caacttaaat aacataaatg aatgcaggtt atttcagaat ctccagatgt tccttaaact
      541 ccctgcccct aagcaaaact tgcagccaat ttaaattttg cagcaacatt acagtgcaga
      601 tttttgcttc aaacacttaa caactctctt gttacattct gctcatttcc atcacaaaag
      661 aaaaagatga a
//
LOCUS       KCLJ01002642             656 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 294827cal ultra-conserved element locus
            uce-2077, sequence.
ACCESSION   KCLJ01002642
VERSION     KCLJ01002642.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 656)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 656)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..656
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="294827cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>656
                     /note="ultra-conserved element locus uce-2077"
BASE COUNT          208 a          108 c          131 g          209 t
ORIGIN      
        1 gaagactcag gctgtgcctg tccagaagta gactgcttgc agcatcttat cctgtgcctc
       61 aggcaacatt gtgcagacag actcagtcaa gagggatgtg tgaactcgtg tggatatatt
      121 tctgggtttt gttcctccct ttcaatacaa tctttttagt gctgagctaa ttatgtagtc
      181 tcagttttac tgttgagtta gagtacctga tcaactttcc aactgtaaaa cagtttgaaa
      241 atcaaatgta gcttacatgc aagacccaac aaaattagaa gtgttaagta cgttttggca
      301 gttcactttt attatgccca gtcctcaaat gtaccagcag acaatcatct gaatgttagt
      361 tatttttcac atgcttatgt gatcacacaa aaagtacatg ctaaaaagaa gcagatggtg
      421 acagatgggg aaggttgaat aaggtggttt tggaaaccta gaaaaatgca cttctgtaat
      481 agtgtaaaaa taaaaattct ttgatcgcca agttagaatg aacaaaatag accaaaactt
      541 tactgataaa aagaaatgga acctgtgagt gttcaatata tatttagtat agtgttgttt
      601 tgtcttttta tcagccagag acttagaaag gtggcagttc tttctttctt ttaaaa
//
LOCUS       KCLJ01002643             307 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 294937cal ultra-conserved element locus
            uce-4544, sequence.
ACCESSION   KCLJ01002643
VERSION     KCLJ01002643.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 307)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 307)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..307
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="294937cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>307
                     /note="ultra-conserved element locus uce-4544"
BASE COUNT           95 a           62 c           52 g           98 t
ORIGIN      
        1 acaacttctg gagtcgctac tctcggttta ctacctccga ttgccctggg tctgatggag
       61 ccagtttcgt aatacctgcc caaaatttta ctcacacatc cattcgacac ctggataggg
      121 aagcggacag aaaatcacat tattaataat ttcaagacaa aaataaaatt gtttaagtat
      181 gcattaaaca atgacaagct tacgttttga ttgtccagca cttggacttt tgcatctgca
      241 tgggtctata acacaaaaat ataccttaaa tggtatgaga acttacttag agagtctttt
      301 ttttttt
//
LOCUS       KCLJ01002644             435 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 295040cal ultra-conserved element locus
            uce-2681, sequence.
ACCESSION   KCLJ01002644
VERSION     KCLJ01002644.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 435)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 435)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..435
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="295040cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>435
                     /note="ultra-conserved element locus uce-2681"
BASE COUNT          130 a           78 c           66 g          161 t
ORIGIN      
        1 cattggaagt ctattaatta taataatccc atccaaaaag ctgtgagggc ttatttttgt
       61 gacatcactc tttgatttct tactgcctta aattatccct ttgttggctg ggtgagggta
      121 acagtcatac ttttgtcatt aaatataagg agttttaaag cctgatccac cccagctcta
      181 attgatattg ctttcatttg gcagatagtg acctgattta taatttaaat atgcatcatt
      241 atatgcacct cttctgtata atgaaaaagt gaagttactc tcatcttctc ctgcaatgtt
      301 aacatcaagg aaaagtatct acttagagcc taattgaaaa ctgttcattg aatttcaaca
      361 tgatagaaaa gtctttttat ctctcaattt gtccattagc tattataatt gaagtatctg
      421 ctccactgct gaatt
//
LOCUS       KCLJ01002645             751 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 295144cal ultra-conserved element locus
            uce-1471, sequence.
ACCESSION   KCLJ01002645
VERSION     KCLJ01002645.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 751)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 751)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..751
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="295144cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>751
                     /note="ultra-conserved element locus uce-1471"
BASE COUNT          177 a          209 c          146 g          219 t
ORIGIN      
        1 tacttttaat ttgcagtaac accacagcag agggatgcaa gaatgactgc tttgcaaccc
       61 tcccttccac aacaagctgg gccacatctt ttcctctacc tccttccacc ccctcttcaa
      121 cccctcccat tttaaactgt gtccaagaca acacattatc tcaactcccc ccaccctgaa
      181 ctaatcaaag gatgagctaa gggagggctc tttagaatgg atgcctctgc aaccctctcc
      241 tctcctgcaa taatcaggtg aattaatgac cctgaagtta aagtgagcgc tgatactcag
      301 gcgttgtgca gcgtagggga gaaagccttc attgttttcg agcaggaggc gggcagcagc
      361 aagggagatt catggatgga gattgaatat gcaattttct ttcaccttgc caagagctgc
      421 ccctgggctg tgcctggcct aaattttttt ttcctcttgc catctctgcc ttatccggcc
      481 ctcccacctc ccttccattc tttccagaaa attaccttca aaattgattt ccacttttac
      541 aaacaaatat aatgggaaca tgagggggga aaaaaatctt gggctgtgat gaattagggc
      601 tgtcaggtgc ttccaagtct cctttgtttt tgttttactg cctgttaggt tctttgtttt
      661 tccaccaact gggaataatg cccctgccgt ccccatggtc catggctacc tttatggcca
      721 ccacctgatg tcattatccc tgctctccat c
//
LOCUS       KCLJ01002646             921 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 295253cal ultra-conserved element locus
            uce-6166, sequence.
ACCESSION   KCLJ01002646
VERSION     KCLJ01002646.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 921)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 921)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..921
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="295253cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>921
                     /note="ultra-conserved element locus uce-6166"
BASE COUNT          273 a          181 c          182 g          285 t
ORIGIN      
        1 atcgtgaatt gaaattggaa accttaaatt attgtttaat gatcagtgat caaacgcata
       61 atcaagataa agaaaattag gatggcagac agcaacatca caatttgaat tttacattat
      121 tagtcttctg cctaactagg cacttttctt gagtatctga actgttttgc cttttaactg
      181 tgcttgcagt tgctatagtg atggcataat ttcgtaatgg tctaaaaatg acactggcat
      241 agatactgac agataggaat taattcacta acaagtaatt atgtagcgaa atgttgactg
      301 ccatacagaa ggtgcactgt gacacattta ctgtttttca gggatggcag taacattagc
      361 gttggtcatt agtggtagac atctccgtac agtgttggat acagacttat atgcagacct
      421 atttagttac ctgtgtgaca gccttgttca ggacaccaga aacagctgtc ctagcctgta
      481 tgagccaaaa taattaggcc tgtcatcttc tcgctctgat ttccccttca acctgctcca
      541 caaaatgcaa atattttgct ttcattgtca cattcacctt gacatggata ttgctttggc
      601 gcataactgg atgagatgac tcagaatttg cattgttcat tctaataaat ttgcttcccc
      661 tctaccgcat ggcaggaccc atcagataaa gtctcccaga gtgtcatcaa tcaacatcgc
      721 tgacagacgg cttttgcctt catttgttac ataggagaac atgcttaatt atttgtcctg
      781 taattagttg ggaaaatgtc aggaaatgtc aactctctgt tcactctgga agggctctgc
      841 ttgaaagcca caatgactga agtgtcatta atgctgccta acaagacgag gatcagctgg
      901 ggaaaagtga aagcttctaa a
//
LOCUS       KCLJ01002647             806 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 295365cal ultra-conserved element locus
            uce-3542, sequence.
ACCESSION   KCLJ01002647
VERSION     KCLJ01002647.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 806)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 806)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..806
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="295365cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>806
                     /note="ultra-conserved element locus uce-3542"
BASE COUNT          242 a          134 c          153 g          277 t
ORIGIN      
        1 aatgtaaaca gtatgtgtaa tttctgtaat ttggaaagag atttctctaa ttcatagcag
       61 acactttctc ctaccgtatt tcataaaggg cacttgcaac aggatttttt aatgttggaa
      121 aagaagagaa cttattttct ttcaaaatca ggaggagtat tcagaaattt acagtaaatg
      181 gcaattcatc ctttagaaat tccttcaacc tactattaga gttgctgcca gagatctgaa
      241 tgcttttgcc taaatctctg taatccaata agctttagca gcttgttttg aaacttgtat
      301 agcaccccag cctgtgtctc tgtatgttcg tttgcaggca ggtgagtgcc ccagggcctg
      361 attattattc aagccaggag gccttcacag ccccaaccag aatgtaattt gtaattaact
      421 gtcatttact tctgtctgca ctgacttgtt gttcaaaaga cagtgtattt gagctggtca
      481 ctagcttctc tttgttgtgg atatgatgtc tttcagatct agttttattc ataatgttta
      541 gaaaaccaag tacttgcact cttgaaacca aagcagaatg gggatttcct aaataaatta
      601 ggtatatgta attatgaata atcaggtatg taaaaaggag tattctctgg gatgggtttc
      661 tgagcagaaa gttaagttca tgtgaaaaga gcattcctga tttaaactta ttgtagttga
      721 gatctgtaaa atgaaagtgc atattttagt tgtgggaatt cttcttaaca cattttaaac
      781 atcacaactg tattttctca ctgaag
//
LOCUS       KCLJ01002648             399 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 295477cal ultra-conserved element locus
            uce-7667, sequence.
ACCESSION   KCLJ01002648
VERSION     KCLJ01002648.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 399)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 399)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..399
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="295477cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>399
                     /note="ultra-conserved element locus uce-7667"
BASE COUNT          125 a           68 c           64 g          142 t
ORIGIN      
        1 cagtgttcaa ttattatttt taaaatgctg gattacagct acgaattctc tggaggttaa
       61 accagagcct tattataagg ggaactacaa gtaaacatta ttaattataa aaaaaaaatt
      121 gcttaaatta ggtttttttc acacctgctt ctttcttaat tagctcgtag tccacatatt
      181 tcagtcagtt gaactcttta gtatttattc aagcatactt gacattaaca tactgtttga
      241 tgtttgatat cctgagtttt taatttacca catgacaaca aatggtattt atgaaatatc
      301 agtgagctgg aaaaatatcc tgtgaagctg cttccgaaat ttgtgcctcg tgctgatgtt
      361 tttatcctgg caagatttcc aggctgcgaa ccaccaaaa
//
LOCUS       KCLJ01002649             460 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 295588cal ultra-conserved element locus
            uce-7590, sequence.
ACCESSION   KCLJ01002649
VERSION     KCLJ01002649.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 460)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 460)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..460
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="295588cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>460
                     /note="ultra-conserved element locus uce-7590"
BASE COUNT          161 a           71 c           81 g          147 t
ORIGIN      
        1 agcacctaat gtatggacat tatttttgga ctactgaatg ccagaaaata atgagctggc
       61 attcagcttt ggtgaatcag cccttgaatt ttcatctaag agcagttttg aattattact
      121 gaagataagg tgtaaatgtg caagggaatt ttatccatgt ttctcccatg aatcataaat
      181 gaggaaaaaa attactgtct aaattgcact taaaaggaat aaagtctttt catgtcatac
      241 atgatttatc aaaatgatct cattttaaga gtactgtggt gtatcttgat taataacatt
      301 agtaagcatg atgaatggcc tctttaatgg taacacagaa tttattggca aaattctacc
      361 aaaaagggtg ggaagtaaaa cacatagcag ttagtaacct gcagaaacag cttaagtaaa
      421 ctctctgtat tttgcactta cacatccttg aaaatcctta
//
LOCUS       KCLJ01002650             571 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 295694cal ultra-conserved element locus
            uce-4012, sequence.
ACCESSION   KCLJ01002650
VERSION     KCLJ01002650.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 571)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 571)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..571
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="295694cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>571
                     /note="ultra-conserved element locus uce-4012"
BASE COUNT          156 a          152 c          128 g          135 t
ORIGIN      
        1 cttgcaaggc ttggtgggat catcctcaca aggccacagt cagagaaaga ggggggaacc
       61 ccaaaactcc cttgatccca agcccaggcc ctgcaactgc agaaatcctc agctatcaca
      121 tttctcctgc tccggatgat aacgaagata attgtttcat ccactttgtc aagctgaaat
      181 gaaaagaggg caaaatgatg ccatcataaa tcatcaggct gagacagcaa aaagaggaca
      241 agatagtgac ttcattaagg gttatgtatt gtgtcattaa gctggcaggg gtcacctttc
      301 atgtcacgca gcagccccgt gatgcattgc tggctcctct ttccaataaa attaaacgta
      361 gatgtaaaac tgattaggcc gtgtttgccc gagcccaagg cagggaactg cgccgggaat
      421 aattgataca agatcgtggc tgatttgtaa tggcagccat ttctcttcct ggtcatttct
      481 ctgctgacct tgcccattaa aataagccca gctgcctcga aaagagagac gctggttcca
      541 cccctccctc cccctgcccc agccacttgc c
//
LOCUS       KCLJ01002651             565 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 295804cal ultra-conserved element locus
            uce-3937, sequence.
ACCESSION   KCLJ01002651
VERSION     KCLJ01002651.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 565)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 565)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..565
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="295804cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>565
                     /note="ultra-conserved element locus uce-3937"
BASE COUNT          213 a          118 c           97 g          137 t
ORIGIN      
        1 aggaagtaac attagcacta attcctataa tgccagccaa gatatgcaca agcaagaaaa
       61 actgaaagca tttgctaaaa tgtaacaaat acttatgtac aaaaaattca ccctgaagca
      121 gagcacatgg cagttgacac tggaacagat ccactggctg ggattataaa ccacgtactg
      181 atccagaaac atgtagtgga gattaacatt taccaaagtt tggcaacatt tttaattatg
      241 caaattatgt aaacaagagg aacatttcaa atcgatctac atgcaaaact tcatgtcatg
      301 cggatttctc tcttacagac agagcccatg atgtgcagca ctcagttgaa ggaacagcta
      361 tggcagacag gttcagacaa cctgcactcc accgctcatt ataaaacaaa aaactactat
      421 acaggaaaga tgtactgtcc taaaaaatct agcaaatctt tttcttccag ccaatagtac
      481 cactgcagaa aagggaaggg atgatataaa gttgtaaaac atggctcgct acttttatgt
      541 cacacaaaca gaaccttcca ttaca
//
LOCUS       KCLJ01002652             729 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 295916cal ultra-conserved element locus
            uce-791, sequence.
ACCESSION   KCLJ01002652
VERSION     KCLJ01002652.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 729)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 729)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..729
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="295916cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>729
                     /note="ultra-conserved element locus uce-791"
BASE COUNT          211 a          168 c          115 g          235 t
ORIGIN      
        1 tgtatggttg caagagagct agaacatttc ttctttcacc ctctactctg aatccttgca
       61 ataattagct gaagtaaaat gaatattagc ttatgcttaa ctgcctttcc agcatgttac
      121 tctgcattga cccagtagtg ctaaaccaat tattttttga actttatggc tttaaataat
      181 ccactgcttt aaaactccct ctacccctca gctacttaac cacaggcccg actgccctaa
      241 atccttttct tatactttgt agctttttaa gcaagccccc tctttaagta gacataatcc
      301 cttctctgta gaaaacatga aagaccttga acaaatcaag atttctccat ggagaattca
      361 gctaatcctc tgcttagctc ctaacaagga aatccatctc gccaccaagc accccattac
      421 tagaactaat gcctgacttg aataacaagc acattattgt gctttaattg tagcactgct
      481 ctgtcacatg gagaagttgg agagaaacgt gactcggctc ctccaggaaa gacaggtcac
      541 gcctttttgt tgttgttcac cttactgtga tttaaaagca gattaaatta actattaata
      601 tgaactgcac atgcttcaga ttagatgaaa cagctgtact gtagctctct agtacactct
      661 attataagag aagtgctgtt acactggatt actattctcc tttacgttgt cttttgactg
      721 ttgtgaaat
//
LOCUS       KCLJ01002653             383 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 296026cal ultra-conserved element locus
            uce-2399, sequence.
ACCESSION   KCLJ01002653
VERSION     KCLJ01002653.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 383)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 383)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..383
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="296026cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>383
                     /note="ultra-conserved element locus uce-2399"
BASE COUNT          103 a           92 c           99 g           89 t
ORIGIN      
        1 tccattccag gaggagctcc ccctgtgccc tggtggggtg ggctgagcac tgtgggagga
       61 ccagggctca ggggcttccc cagcttgcag gatctttcat cctccgtcac cacaaagcca
      121 ggccagatct gcatttgcag cagcccacag aagctgcctc tgttgtctta tttttgttat
      181 ttttgagagg atattttagc gctgagcaca ttccctcctg ttgccatggc agccgtgaca
      241 ggggttatat accgtgagaa aaataccaaa attaatgagt gagtgaaaga gcagccaaga
      301 gaaaaacaag gttgagttaa aacagtaata aaaacaatct cccaataatt tggcagcgag
      361 catcccacag gcggtgaaca tgg
//
LOCUS       KCLJ01002654             578 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 296134cal ultra-conserved element locus
            uce-2465, sequence.
ACCESSION   KCLJ01002654
VERSION     KCLJ01002654.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 578)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 578)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..578
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="296134cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>578
                     /note="ultra-conserved element locus uce-2465"
BASE COUNT          152 a          163 c          127 g          136 t
ORIGIN      
        1 caggacacag aaaatgccac ttgcccaaga gctggagaca tttgtgcctc ctgctctgtc
       61 cacatgtccc tggagtcttc cctgcttcca gaagccccca ctctcccaca accacctcaa
      121 tcttctgaaa ttcttcaaag ttccatcaac taaactcttg ctctgaattt cccttcacaa
      181 ctccaccaca gtctgcacgt tctgttggta cccagctcct acctattcga gtattggcaa
      241 atacatcagc tagtgaccca ctggtccctt tgccttctcc atgggaaagt gtagaggatg
      301 ctgatgagga tgtggatgac ccctgaacag atcggttgat ccaagactca gcattctgta
      361 agctctggtg caatgcagca gagagagcag cttggcgcct gagcgagccc tcgtcctcgg
      421 aggcggaaga cgtgtctgtg tggaagcaga aagaaaatct gggaaaagca catggcactg
      481 aacatgctct ttccaatcac atatcaacag cacaggcaaa ccagaggtta aagcagcagt
      541 tgttggtggg aatctccaag cctagaactt aactctca
//
LOCUS       KCLJ01002655             386 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 296245cal ultra-conserved element locus
            uce-2964, sequence.
ACCESSION   KCLJ01002655
VERSION     KCLJ01002655.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 386)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 386)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..386
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="296245cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>386
                     /note="ultra-conserved element locus uce-2964"
BASE COUNT          102 a           60 c          108 g          116 t
ORIGIN      
        1 ggctgactcc ttgttagaaa tgaggtgcaa gtatggaagg gtatggactg gagtgcactg
       61 gggccaacaa gggcctgact tgatcaactt caacaggctt tggatcaggt tcagtgactg
      121 tttgcatgag ggctggtgtg agtaggctga gaaatgtggt ctatcactgc agagaaagga
      181 tggtgcttta ctgggggtgg aaaatggaat tgtcaccgtg gaatgaatga attgtacagt
      241 ttctcttttg taacccaggg aataattaag atagatgggt agatgaatta gctgtcctgc
      301 aaggtcaaaa gtggattgcc ttattactct attatttcac tgttgtggaa ctatcaccac
      361 taacgccttt ttcatgatat tttgta
//
LOCUS       KCLJ01002656             536 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 296350cal ultra-conserved element locus
            uce-4320, sequence.
ACCESSION   KCLJ01002656
VERSION     KCLJ01002656.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 536)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 536)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..536
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="296350cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>536
                     /note="ultra-conserved element locus uce-4320"
BASE COUNT          141 a          102 c          139 g          154 t
ORIGIN      
        1 aatgcacatg tgtgttttga actgatatta cggaaaaaaa tagtttgttg tcccagcaga
       61 ttcccttatt gaacaatatt ggcattaaat aaaagagctg aatcataggg tgacttcttt
      121 atttcttctt actggctctg gttgtatgtg atcatgtgtc aacagagcat tcattgggtt
      181 agtcatttct ggaccagtgt agggtcactt gggattcaca gggctaggat tataccctct
      241 cttcacagca atgccaattg taggccttat acagatgaga gcactgagtg agaaataaag
      301 tgcatggtgg atgaaaggct taactgaatc gctttcagcc cattgttagt ccaggggagc
      361 ttagcgggga tgagagggca gcagcccgct ttgaaatttg cttgaacaag tgaataggag
      421 ctccccataa agcagccctg aaaggagctg cctgtttttt cctgctgtaa caatggcccg
      481 tgcaggctgt gagagtttgg ggaagcttgg ctgattaaac tgcctgcagc tccagg
//
LOCUS       KCLJ01002657             491 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 296457cal ultra-conserved element locus
            uce-4189, sequence.
ACCESSION   KCLJ01002657
VERSION     KCLJ01002657.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 491)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 491)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..491
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="296457cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>491
                     /note="ultra-conserved element locus uce-4189"
BASE COUNT          157 a          107 c           90 g          137 t
ORIGIN      
        1 tagctgtcag tgttgcatta aaagccctga ttgttgcctt gtagagaaag gaagagacaa
       61 gtctggaaac caacaaggga ttactttttt tatattagcc tgtaattaaa taatagttca
      121 tgttgccttc ttccaccggg aattacatcc ttttcacctc tcttctgcta aagcagagac
      181 atccattacg atgagtagct acaacacttg tcagatccaa tcagctccaa atgactgaaa
      241 agcaactgac gtgtgctctc ttaaagcatg gtttcttctc ccccaaaagc ccactgtcct
      301 ttcacgtgca tgtaacagtc agaagagatc acatcacgca atgaagaaaa acagaagcat
      361 atggtactaa ggggcctctg caggagaggg ctaaaatgcc aaggctcaca cataaaatat
      421 atgtaaaaat ttgtgttcat atacaatgcc agatcatcac ttcatttacc ttggattatt
      481 tagcaattgc a
//
LOCUS       KCLJ01002658             301 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 296564cal ultra-conserved element locus
            uce-2202, sequence.
ACCESSION   KCLJ01002658
VERSION     KCLJ01002658.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 301)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 301)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..301
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="296564cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>301
                     /note="ultra-conserved element locus uce-2202"
BASE COUNT          107 a           56 c           47 g           91 t
ORIGIN      
        1 tactgtttac caaaaagaaa cttgagcagt ccaggaaaag ctttaaattt atgaaaacca
       61 taaattgagg caaacctaag attcccaatg gaatcaagat tatcttcccg ctaccaccac
      121 cttaaaatta tcacatgctt attggaacac taatatctgc accctaggag tacatttgct
      181 ttcaacaatg agggtgattc ttttaaaaac acttcagtgt ggtaaatgcg atacagatct
      241 ttgcaagttt tggaacagtt ttgctaatag cagctaacaa tactggatta atataattta
      301 t
//
LOCUS       KCLJ01002659             563 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 296664cal ultra-conserved element locus
            uce-4848, sequence.
ACCESSION   KCLJ01002659
VERSION     KCLJ01002659.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 563)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 563)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..563
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="296664cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>563
                     /note="ultra-conserved element locus uce-4848"
BASE COUNT          184 a          100 c          117 g          162 t
ORIGIN      
        1 tgccagcagg tctcagggct gaggaggctc tgagacaggg agcagcacaa aggggcaggc
       61 agagagagac aggcacaatc ggggtttcat ctacctctgc ggatttctca cattacacac
      121 aatgcatact ttacatttta caaaaccaag gaaatgaagg gaaatatatc tgtcaccgaa
      181 gaagacatca gagctttaat agctgaaatg acggatattt ttagatggag gtctagttta
      241 acttacttac attaagggtc taatctctgc tgaacaatag ctatgttagc ttgaacacat
      301 agtgagaaat ctgttccatt aattaagtgc tgcctgtact actcggattt gtagcaaatg
      361 ttaatagact tcctctgttg gacaattact ttattttgcc aagttgctaa tggattaaat
      421 tgaaaaggtc catgtgttag actttagctt caaagttcta aaaaatgcct tgcatacaac
      481 aatagaaaat acctatgtat taatattatt aatgggccat cctcaaaggc acgtaagata
      541 tgtgaaggct tagcaaattc att
//
LOCUS       KCLJ01002660             584 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 296878cal ultra-conserved element locus
            uce-666, sequence.
ACCESSION   KCLJ01002660
VERSION     KCLJ01002660.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 584)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 584)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..584
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="296878cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>584
                     /note="ultra-conserved element locus uce-666"
BASE COUNT          211 a          106 c           95 g          172 t
ORIGIN      
        1 gtacctattt tacaaaataa aggcaaggca tattttatta tgtgccattc atgcttataa
       61 aaatataaac ttaaaatcct atgaaatgtt atgtaagaat attaacctct gcttcaatgt
      121 acagtttcca gaatctgcca gaactgggga actgggcaac aaggcgttca taggtcttcc
      181 gtgctttgtc tataggctga ttctaaaatc aaaacagcat tatgatttat gtaaatgaat
      241 tttactccag aacgaaatag tgtgagtgga ccatagataa ggaaatgtaa tcctatatca
      301 ctaaacctgt gcctctcgaa tgagaatgct ccaagcgtca aggtcatatg gattttcttc
      361 tagtttcttt tcagctttct tcactttttc tgggacatat tcagcagtct agaaaaatta
      421 aaaagaagac ataagatttg aaaagttctg ttacacagtc aagcaaaaga aacatttcaa
      481 cctcagcttt taaaataaca agttgtccca ggaagagaat gcagcacaag ttctacatgt
      541 tatggacatc aaccagacta aaccaactca aaaaacataa aaac
//
LOCUS       KCLJ01002661             654 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 296990cal ultra-conserved element locus
            uce-4560, sequence.
ACCESSION   KCLJ01002661
VERSION     KCLJ01002661.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 654)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 654)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..654
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="296990cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>654
                     /note="ultra-conserved element locus uce-4560"
BASE COUNT          193 a          120 c          119 g          222 t
ORIGIN      
        1 aattagatgg ttcggcagca ctggtcatgt ttcagttacc tttggaagaa tttctaggaa
       61 ggaaagacac aagaacacag ttgctctatg gtagctgctc tttttgtttc actcctgcta
      121 tgtccttaag caaacatttt ccttctcttt ctgtcaaact aaggaacttt gttagtaaca
      181 ccgtaggaca ggagataact atagagctct ctaattgtta agctcttgca aaggctgagc
      241 ctgatcattc actgaattgt tgagttgatg ggattcgtgt agctggttat aaattgataa
      301 tctaaattaa ttcattcaag cagaaatcga ttttgtaact ccttgagagc ttgtaataat
      361 gcttacctcc taccgttagc tgcattctcc gtttcataaa gctggtcgga aacagctgga
      421 ttcaggtgac ctgctagctc attaaatctg ttacatgttc gttctggtaa atgatattaa
      481 gctgaaatgt ccttgcgttg acctttaatt ttatgacaga aataacctaa tttgtaacac
      541 aaaataacaa tctcctcgga ttactttgcc ttgttaaaat attttatgca tttttcattt
      601 acacgaaggt aatggaaaaa cacttaaact atctgttatt taagccacaa gaga
//
LOCUS       KCLJ01002662             387 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 297102cal ultra-conserved element locus
            uce-6050, sequence.
ACCESSION   KCLJ01002662
VERSION     KCLJ01002662.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 387)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 387)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..387
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="297102cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>387
                     /note="ultra-conserved element locus uce-6050"
BASE COUNT          123 a           75 c           76 g          113 t
ORIGIN      
        1 cccattcact tctgtgggat ctcttcccaa tccaagttag aaacatgctc tttgtggcac
       61 cacaccagaa tacagaagtt tcatggttcc aaaggataat ctcagagaaa gagagagaaa
      121 gccagtgctt caatcaggtc gttcaaagag gataccactc ttataatcat aatgtatata
      181 cattataact tacatccaca gcctggttat aactaattct agcctggatc atctcaggag
      241 tgtctttaat actggtaaac ttcaaagcat atggatgctg acggtacttc ttctgttgag
      301 cagaaaaaga tcaaagctgt gaattttgtg ctgctctttc atgctatttg aaagagaaaa
      361 atcataggtt gctggagatt agagtga
//
LOCUS       KCLJ01002663             590 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 297205cal ultra-conserved element locus
            uce-1825, sequence.
ACCESSION   KCLJ01002663
VERSION     KCLJ01002663.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 590)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 590)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..590
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="297205cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>590
                     /note="ultra-conserved element locus uce-1825"
BASE COUNT          210 a           88 c          117 g          175 t
ORIGIN      
        1 tgagtgaggt aagctgataa aaactattgc ttgccttcac tatttgtaaa aacattcagt
       61 gcctaaatgt gcagataaaa ggaaattgtt tttagaatgg tttggtacat ctgatggagg
      121 caacaaaata gaatgaaaat ttatgaatat catagatgga aaaaatgagg tcaagataat
      181 taaaagtctc tctgtcttcc aaagataatc taacttgctg ctcagtggtt gtcacagtca
      241 tttcagggtt cacctatagt gtgcaatgcg tatgaactta attaagtact aagaggtaat
      301 gaattggaat tttttgctta gtgctatttt tcttcatagc atgcaaaccc ataaatcgta
      361 caaagctgtc aaaaggaaat acctactcca ccagtgatgt ggaggaaaac agatgccact
      421 tattcaataa actaatatcc acacagaaga aaaatgttga ctagatacct cagagtcaaa
      481 gttggtttga aagtttgtca atacagaatt ttatggctgt gaactgagga tgaaatttag
      541 ctgaacaagt gaattaaaat ttcaggtact ctgaccggtg gcacagtaaa
//
LOCUS       KCLJ01002664             705 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 297312cal ultra-conserved element locus
            uce-6543, sequence.
ACCESSION   KCLJ01002664
VERSION     KCLJ01002664.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 705)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 705)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..705
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="297312cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>705
                     /note="ultra-conserved element locus uce-6543"
BASE COUNT          221 a          117 c          127 g          240 t
ORIGIN      
        1 gaagttagtt caagtgagca tttagggcta gaaaaattct gccttcattt gtgcatataa
       61 gttgagatac atctctgcat cctaataaga accagccaag tagacagggg ccatgtggat
      121 cccaggaatg gtctttcagg ttccatgtgc tgaacacctc ttgtgagcat ctcagacact
      181 ctgctgagga gaggtgtggt atgtccatcc agaagcttag atttccaatt gttctatacg
      241 ttgtgtgaga tttcagattt catcccttgt caagacttca aacctggtct tttagatatc
      301 aatcaaaagc acattttcta ccctgtcctc atttacattt atctaatgct taaggtcatt
      361 tgtgatcatt tgagtgtatt tcagcatatg gaatcagtga ataatagatt tcagcctcac
      421 gctgtgaaga aagattgtgc ttttacaaga catgatgttg tttactgggt gttaataatc
      481 actaattaat aaacatatct agacatcata aaatgttgcg taaaaatgtc aagtgtttaa
      541 cttcttgagc gcaatagcgt ttgaggcctt atttacataa ataaaataat taaattacaa
      601 aattatgtga agtactatat gaaaacataa gtttaattct acattctttt gcagatttgt
      661 tataagtata aggttttata aaatgactat tcaaatgact ctcta
//
LOCUS       KCLJ01002665             657 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 297423cal ultra-conserved element locus
            uce-4249, sequence.
ACCESSION   KCLJ01002665
VERSION     KCLJ01002665.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 657)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 657)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..657
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="297423cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>657
                     /note="ultra-conserved element locus uce-4249"
BASE COUNT          197 a          142 c          152 g          166 t
ORIGIN      
        1 aaagaaagaa aaagaattta aaaaaattta cattgacttt accactcaaa ccaggatttt
       61 aataggtatc tataaatgga ttttaagcag gatttttcca tgttttctcc caaagctgat
      121 ttaaaatcta atattattag attggtcaca gccttcatat tttaactgtc agacccaaag
      181 tctgaaaggt gattcattca aggcttgcta aaatatttgc tcagcagcac aatagtgtgt
      241 gatggaaaat aaactcctct ggagcatctc accctatcag ccatggcctg cagcaggaaa
      301 agaatgaggg aaggtcagtc aattatgtgt ggtaatcacc gtaagcatat tatctgagac
      361 acagatgtct tccctgaccc cacacgacat agctattaac cccacagtag tataaaaatg
      421 gggaggagga ggagctggtc ccttaggtaa accagacctt ttcaggccgg gctggtccgg
      481 cggctccgcg gagttagggc gctgctgcgg gaggcagggc cgcctctgct ccttggggac
      541 ctctccacag acccagtcat gtgagataaa tagttgcatc atcaaaaatg ggactggcaa
      601 attgacttgg gagatatttc gggagcgtta acagccctgg aatgccaggc actgccc
//
LOCUS       KCLJ01002666             474 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 297534cal ultra-conserved element locus
            uce-3847, sequence.
ACCESSION   KCLJ01002666
VERSION     KCLJ01002666.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 474)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 474)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..474
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="297534cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>474
                     /note="ultra-conserved element locus uce-3847"
BASE COUNT          187 a           69 c           85 g          133 t
ORIGIN      
        1 taccttaatc agaagcaagc aaaaaaagtc cctattttaa agggacattt atctattaga
       61 ttgaactgtt tgcaaaggaa atttatgtgc caaggttata aagattataa aagacactat
      121 ttaattatcc ctcagttgaa caaagaagtc cagaaagagc ttgatatggg actaatggac
      181 cagcaaaaat gcaaagtacc attcagcact agagtaattg ggcagaacac agaaagagac
      241 caggataaat gattacttca ttaattttaa aattaaaggg caagataagg tggtcactat
      301 catagagagt tattaaggta aaactggcta atcagcacaa tttaaatgta aagaagtcat
      361 ccaatgccta ccaatttcag aagagcgtga aataaagcaa tttgatgtag ctttatcaat
      421 caaatcatac agataatggt ttagcttaag agttttctaa tttattgtag cctt
//
LOCUS       KCLJ01002667             535 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 297639cal ultra-conserved element locus
            uce-3116, sequence.
ACCESSION   KCLJ01002667
VERSION     KCLJ01002667.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 535)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 535)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..535
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="297639cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>535
                     /note="ultra-conserved element locus uce-3116"
BASE COUNT          162 a          110 c           95 g          168 t
ORIGIN      
        1 ggtttttctt cccccggctc tctttccgtt tgcctacaca tcctccaagt cctagcccta
       61 gctcttaact gcagtccctg gaacaagagg gaaaaaatcg tttatggctt aaatcccaat
      121 ggctgatttt gtgtgtgtgt tataagaatg cacccacaac aacaaaaaag tcacttctct
      181 gtcccccacc gtacagcaga agaataataa aaaagcttta tatttttgca gtgggtattc
      241 aaagataatt tgatgccatt gtttctgcta cagatggttc tttttaatac aataacactg
      301 ctctttgtgc atactacaca caataaaaat cgaaagcgtt ctcctgaata accattttgt
      361 tctcgcttgt atacaggcca acaaaagctg ccgtgaggta atgggttctg tttattgaag
      421 ccatagaata gaggtttgat aaagattttt gtatatgggg aaaaaattaa aataaagacc
      481 tcgcaaggtc gagctgatct ctgcgtattt attaccactg aaatatttta tcaat
//
LOCUS       KCLJ01002668             538 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 297857cal ultra-conserved element locus
            uce-542, sequence.
ACCESSION   KCLJ01002668
VERSION     KCLJ01002668.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 538)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 538)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..538
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="297857cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>538
                     /note="ultra-conserved element locus uce-542"
BASE COUNT          161 a          104 c          113 g          160 t
ORIGIN      
        1 tcggtatccc acgctgaaaa cagtacagta actgtaggtg gcaaaaagtc tttataccag
       61 aaatattgcc ataagaaatt gtgttaggag caagcagcag ggtggacaaa ggtgaaaata
      121 aggaaagaaa attaatctgc atacccagca ggcaatggtc atttatatat tcatctgttt
      181 tcagcactga acttagtgag actgtgtcca tttcatggtg ccgtgcagag aaaatgaagt
      241 gtgtaaggtc attcaataaa gattaaatta aaaacatatt cctatagtac cctcagggtc
      301 cattagcctt gatgagtgta caaatacttt ctttgttata tgtgctccat cctgaaaggg
      361 attgtgtgct tctctcatta taaatgtgca cctgaaaaga ttgaacatta tcccctcttt
      421 tttaactgac ctgtggccac cgctgggttc attagtgcag aacatctttt ccactggctg
      481 agtctgccct attgttttca ctggccaggg tcaagtcaag ggcattcaac ctagattg
//
LOCUS       KCLJ01002669             210 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 297961cal ultra-conserved element locus
            uce-7776, sequence.
ACCESSION   KCLJ01002669
VERSION     KCLJ01002669.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 210)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 210)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..210
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="297961cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>210
                     /note="ultra-conserved element locus uce-7776"
BASE COUNT           41 a           65 c           61 g           43 t
ORIGIN      
        1 aagctcgacc ggggtgggca cggtgcgaga tgccagcagc cccgcgaagc cccgcgttca
       61 tgcggaccgg ccgtaccttt ctggagagga cgacttctca gagttaactg acatcagcag
      121 ctcagtcttc tgcttgattt ctggaaaaat cagaaaacgt tcacttccgg aggttccctg
      181 cgcccttttg tccgccggag cccgggacgc
//
LOCUS       KCLJ01002670             688 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 298062cal ultra-conserved element locus
            uce-6664, sequence.
ACCESSION   KCLJ01002670
VERSION     KCLJ01002670.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 688)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 688)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..688
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="298062cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>688
                     /note="ultra-conserved element locus uce-6664"
BASE COUNT          194 a          131 c          146 g          217 t
ORIGIN      
        1 tgttctatag ggccaactca agaaatatcc aggtttgggg aagggcaaga aggcaagtgt
       61 taccttcttc cttatctcct tggaataaaa ctgtttcata aatctggcaa tgtccaggaa
      121 gttcattgtg cctcagaaag aaatttaatt taatgcttgc ctttggaaaa ctgtgcttaa
      181 cctgtaagtt tgggaggcag agagtgcaga ggaattgctc aggaaagggt ttgcagagca
      241 caaatctgtt tggcaaggaa gttgctgaaa actgtggagt agatgctgca gagagtacct
      301 ttatgattga tttccattca agtcagactg actgcagtgt ggtcattttt ctaacccata
      361 actgcacaca ctgcagcagt ctgctatctg cagggtgtct gaattatagc agtccatgtc
      421 cctgttacct tttacacaaa ttacttacac cggtttcttt ttccatgcaa attcatcagt
      481 tttacagcct cttgtagctg ctgtcaggaa actgttgcag agataaaacc agttaatttt
      541 actgtgctta agcctctgtt aaagcgtgca ggaagcctat gatagttaag agaagataac
      601 aaaggatttg agtgttcttg tcataaatta cttcccaact taattccttt taatgaccat
      661 tccagatttt ctcaagtttt aatggcct
//
LOCUS       KCLJ01002671             399 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 298171cal ultra-conserved element locus
            uce-4155, sequence.
ACCESSION   KCLJ01002671
VERSION     KCLJ01002671.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 399)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 399)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..399
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="298171cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>399
                     /note="ultra-conserved element locus uce-4155"
BASE COUNT          147 a           70 c           91 g           91 t
ORIGIN      
        1 aaaactagcc tttctttttt tttttccttc caaggaaata tacagcttaa gcacggagac
       61 aaggggtgca tgatatgcag acaggtgtaa aacatgaagt aattatagaa gctcaaatta
      121 gttcctaggc ctgaggcaaa aaagagaaca gtgccttgac aaaagggaat agcaaataag
      181 gatagcaaac aaaaaatggc ttgaatgtgt aaattagcaa gaaaaatgag acagaaaagc
      241 agctttactc tactattatt caccacatga gaacagagca gctgaacatg atcaagaggg
      301 ctttggagga gagaggcagg catcaacacc aaaacgaagc caaagagtgg cagctccgtg
      361 ctttctagtc agtcactcat tatgtggtga agtgctctt
//
LOCUS       KCLJ01002672             715 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 298279cal ultra-conserved element locus
            uce-2560, sequence.
ACCESSION   KCLJ01002672
VERSION     KCLJ01002672.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 715)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 715)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..715
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="298279cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>715
                     /note="ultra-conserved element locus uce-2560"
BASE COUNT          171 a          134 c          168 g          242 t
ORIGIN      
        1 ggaggtaggg atggcagcca gtagctaaca gctttctagg gtgtatcttc cttcatgaag
       61 tttatcttct gtgcagggct ggctgtttgt ggtggctggt aagtcacata ctttatggtg
      121 cttcagcaaa gctttcaagc tccttgacaa ctttttaggt agaggttttg acatgtctca
      181 ggcaactgag tgaatctggt catcgtattc ttgtttaatt aaagtgactt tatggtatca
      241 tagcaggcgg tgtatttgtg agggtgaaac tggtcgggtt tttttacact gtatctctcc
      301 tgcagccaga ctgttgatct cctcatgcaa gagtcaggat gtcgtttaga acatccttca
      361 gctaccaaat tccgcaatca tgtcatggaa ggagaatggg ataaggtaac gtagggctta
      421 taggactgta ttaaccactg ttgaaatatc tatgagagaa ttcaaaattc atcctcctta
      481 tatactctct tatgccgatt tctgcaggct gagaacgacc tgaatgaact taaggcctta
      541 gtgcattctc cgcatgcaat tgtggtaaga ggcacacttg aactctttca gagctgtgta
      601 gttggactaa ttgtagtggt gtaatctttc actatggagt tggttgtcca tggttcttgt
      661 tttctcttgt ttactttaag ctgcttgcat gctatctcaa acgtcatact aatct
//
LOCUS       KCLJ01002673             533 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 298389cal ultra-conserved element locus
            uce-2737, sequence.
ACCESSION   KCLJ01002673
VERSION     KCLJ01002673.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 533)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 533)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..533
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="298389cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>533
                     /note="ultra-conserved element locus uce-2737"
BASE COUNT          164 a          109 c          105 g          155 t
ORIGIN      
        1 ttttaggaag gaatggaagg ttaataaacc ccaatgtgaa atcaatcagg agagaacacc
       61 tttgctcagc acctggaaat atgggagggt acaaacaatg gtcttaacaa gctaattgct
      121 ttcccagcct gcctgaagcc ggagctgttt tacatttcag ttcatttcgt cagagagaaa
      181 aggctgaagt gatttgtggt ggtctcagga gtctctgcca gctatgatgt atataaaagg
      241 aattttttat tccagttgta accataggca gtaatgttta tagtaggtga acatattagc
      301 ctggacgcag ggcatgaatt ttactctagc aaaagccagt tcatttatac agcctaagag
      361 ttaaatgtcg gtatttgaag acaaattata gggaaattca tttaaaccca tgttatgtgg
      421 cagaatataa aaacagacag tcctatctat ctttatcaat tttttacagc cctcttaatt
      481 cactttgctt ccagcaaccc cttccccaca aacctctcct cccgcgagca cac
//
LOCUS       KCLJ01002674             685 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 298498cal ultra-conserved element locus
            uce-4136, sequence.
ACCESSION   KCLJ01002674
VERSION     KCLJ01002674.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 685)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 685)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..685
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="298498cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>685
                     /note="ultra-conserved element locus uce-4136"
BASE COUNT          198 a          126 c          160 g          201 t
ORIGIN      
        1 acagaaataa tgtcaagcag ggccccttat ctcaggatgt tgtaatgtag ctgctgtaag
       61 ccctcgcctg gatacgagat aagagcaacc ttacaagctt gtgggggagc gaggaccagc
      121 agtgccatca ctgggacaac aatggcagag ctgtcactcg cacattatgg ctctttctgg
      181 tgccaaggaa agatatgtat gctgagtggt gaataacaag cacaaaaata aaagtcttga
      241 atgttcatct aataatgatg tatttgtaac aggattatac tgcccaatga tattcttttt
      301 ttatctcctc agtaaatggt gaggcagctg tgtgctttgg caaggcatga tgtcctttct
      361 tttgtgtgct gcatattaat cctttattga agtaattaaa tgtgtgctta atggcaatga
      421 gctggcagaa tgaacgtaca attgaattag cagttatgat ggggaccatg ctacaagatg
      481 aactaaatgc aattactgta ggcatttttc tccaagttga atctggctgc atgacatgac
      541 ttaattacag gttgttagac acactgatcc catagtggag gcacagctgt gtatctgtaa
      601 cacacatata ttcactgaga aattcagtct ggtctgaagg cagctcttgg ttgtgctaaa
      661 aaccagacag tctggtgcag tcttt
//
LOCUS       KCLJ01002675             791 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 298607cal ultra-conserved element locus
            uce-6929, sequence.
ACCESSION   KCLJ01002675
VERSION     KCLJ01002675.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 791)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 791)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..791
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="298607cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>791
                     /note="ultra-conserved element locus uce-6929"
BASE COUNT          229 a          133 c          127 g          302 t
ORIGIN      
        1 ttttatcttt tgagataaat atcctgctgg taatcaaaca ctgtaaataa aacttgtgat
       61 ttttggagat cgttatgcta attatcccct agatctgagt tgtatgccaa actgtttaag
      121 ccatttaaga tcatactttt ttttgcatgt tgcaaattag acagttcatg gttatttctt
      181 agatatgttg atcacaaagg gtatctaaca gattttccac tacttaactg taccacttgc
      241 ttctttctct tttcttcttg tctatgatgt atgattaatc atagattact tcattttgtt
      301 tcatttcatt tacaacattt atgagcttca ctttgtcggt atgaaatgct tgtccccttc
      361 tttcctttcc aaagtggcat aattagtgtt agcatctttt ttaacaggct acataaagtt
      421 tagtggctgg attaaatcaa gtcattaaca taatgtgcta tacaatttgc ccctatctct
      481 tttcgtttcc agtacatcaa agtgccacag agtgccagtg taattgggcc ttgctagctt
      541 gtcaggttca gtcaggctga tggctgctgc ttttactaaa aagcttccag gcatgataat
      601 taatagagaa aagaagtctg agaaatgtaa aagtttggac agttctctat gaatatttca
      661 tacatttgaa taatcagaag ttaaaattat caatttgatg tataatacat tgattaaaag
      721 ccttgtttca gatcctcaaa atagacatca aaactaggaa tttgcatttt ctttggcatg
      781 gtctttatat t
//
LOCUS       KCLJ01002676             625 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 298720cal ultra-conserved element locus
            uce-6219, sequence.
ACCESSION   KCLJ01002676
VERSION     KCLJ01002676.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 625)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 625)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..625
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="298720cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>625
                     /note="ultra-conserved element locus uce-6219"
BASE COUNT          224 a          137 c          148 g          116 t
ORIGIN      
        1 agccaccccc ttctgaaggt gtgaaacccc cttcatctgg acaaaaatct atgctggaaa
       61 aattcaagct ggttaatgct aggactgctc tgagacctcc tttgtcactg agctcaggac
      121 ccggtgacag tgggagagag gatgacaact tttcagagtg tggtgaaatg gatgtcttaa
      181 gtggtggggt gaacagtggc ggctccacaa gtagcagtcc caaagtatca cccaagttaa
      241 cccctccaaa agctggcagc aaaaatctca gcaataaaaa gtctttgcta cagccaaagg
      301 acaaagagga aaagaacagg gacaaaaaca aagtttgcac tgagaaagca gtcaaggaag
      361 agaaggatca ggtcattgaa tcatctacaa agaagagctc aaaaattgca agcttaatcc
      421 caaagggaag caagacaaca gcagccaaga aagaaagttt aatatcatct tctagtggga
      481 tcccaaaacc tggatcaaag gtgccaacag caaagcagag cacttcctcc gcatgcacag
      541 ggagtaagga ggttgaaaaa ctgaggacta caaaaggaaa ccagtcccag tcaacaccaa
      601 aatctcagct tagtgagaag gcttc
//
LOCUS       KCLJ01002677             665 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 298828cal ultra-conserved element locus
            uce-1693, sequence.
ACCESSION   KCLJ01002677
VERSION     KCLJ01002677.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 665)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 665)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..665
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="298828cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>665
                     /note="ultra-conserved element locus uce-1693"
BASE COUNT          213 a          122 c          125 g          205 t
ORIGIN      
        1 aaaggagttc aacactaata aaaacttgga caaattaaat tgacaaagcc ccattacctt
       61 ggcaaaaagt ccctgtcaaa agataaactt taaagctaga atgcatgaaa gagtccccag
      121 atagaattaa aatttaaact gattcttgag agataagctt tttttaaatc cacctctttg
      181 ctgcaagtca ggattttttt cccctttaaa tctcttgagc gattttcatt ttttgcaagg
      241 ccgcactgct ggtgtcctgg aaaaatggag agttagagct ttatcagttg gtgccctgag
      301 gtatgtggca aagaagctaa atccttgaag attagcaaaa aaaatgcagc acatggcaat
      361 aaggggctta tatgactact agtattagtt caggtgaaag aagtattgct tatacataaa
      421 actggacaaa tccactgaca atgtattttt agttagctac aaaggagtct tatattgctg
      481 gactttacct ctttggtgat ttgggaagct tagtaatcca ctgtaaatgc tcttctgctg
      541 gccccaattc ccagtattac tccagaatgc tgctttttaa cccctaaaag tacatgtttc
      601 cttaatttag cttttagatc acacaatgac ttatttaggc agcagttgtg ctgcaagagc
      661 aaatg
//
LOCUS       KCLJ01002678             502 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 298938cal ultra-conserved element locus
            uce-5366, sequence.
ACCESSION   KCLJ01002678
VERSION     KCLJ01002678.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 502)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 502)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..502
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="298938cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>502
                     /note="ultra-conserved element locus uce-5366"
BASE COUNT          130 a          119 c          116 g          137 t
ORIGIN      
        1 ttttgctggt caataaatgt gatttcttct tttaaaagca gaagctaaaa gctctttaat
       61 gggagaggcg ccgcgttatt gtgtccgcgg caaatccggc acaaagcggg agctcagcgg
      121 ggctccgcca gggtgagatc cacacttaac ccctgcacac attgttgctc catttctttt
      181 cctggatctg tcagcaatgt aacaggccat tttcaatcta aatcttgtta tggattaata
      241 agcttattat gcaatttatc atgaggaaaa ttgcgcccaa ggctccacgc tgatcccttc
      301 atttattccc tgctctttgc cagactaatc ttcctgacag ccaagggtgg aatcacacca
      361 gctcgctgaa gatgtgggca ctcggatgct ggaagttggg atttacataa aacggggctt
      421 tgggaaggga caaggtggtg gtgcctcctg tcacacgcat cactggaatt cacacaaaaa
      481 acaacggtaa tccaatttgt cc
//
LOCUS       KCLJ01002679             418 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 299032cal ultra-conserved element locus
            uce-7317, sequence.
ACCESSION   KCLJ01002679
VERSION     KCLJ01002679.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 418)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 418)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..418
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="299032cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>418
                     /note="ultra-conserved element locus uce-7317"
BASE COUNT          120 a           71 c           69 g          158 t
ORIGIN      
        1 ttttgtttcc tgttgaaaat acagtcccta cacaactcac agataatctc gtgtacacta
       61 tacaatttgt tatgcagtcc tcagctgaat ccctggatat gaattccgtt ctcaatgtca
      121 gagtgttata gtagtattat atagaacttc aatgtctttg tggacattgt tgtgaaattg
      181 gtgacttaat gtctagctat catatgtctt tttgcaagac agttaggaac agtatgtaca
      241 gtatataaat gctaaatgat ttaagtatga cacttgcatt tgctgatgct taatgagacc
      301 ctattatctg ctctttgctc ctattacttc atagcctttt taatctgtca agtatttaca
      361 gtgttctatt tttcatattg aattgacttt agagcataaa agatagcatt gcaatgca
//
LOCUS       KCLJ01002680             704 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 299137cal ultra-conserved element locus
            uce-6636, sequence.
ACCESSION   KCLJ01002680
VERSION     KCLJ01002680.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 704)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 704)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..704
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="299137cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>704
                     /note="ultra-conserved element locus uce-6636"
BASE COUNT          218 a          145 c           95 g          246 t
ORIGIN      
        1 atacagagta tcctcaatgg atgtataact accctctcaa atggagtttc ctgatatttt
       61 aaatgaatgg tggggtttat tttggcagca gcatcacata actaatgctt catattacac
      121 acaaaaatga ttttggtgcc attccttaaa tgaaatgttt catttcaata aaagcttgta
      181 attgtaacac ttaaatgcta tcattaatag caaaaagaaa gttctcccag caacattaaa
      241 gagtgaactt ccccactctt tcctctatta cagccgatgt ctttttattg tcttttttca
      301 tctctatttt actttatctg ccaaactact ttgcatttca agacatttcc actcaccttg
      361 agttcttggt tcaaaaagaa acaataaagt ttaatctttt cacttgacaa tgatgtatgg
      421 gtctgctgaa aaacactttt caggtattat cattaaaaag tctctctagt ttctcttcaa
      481 ctcttgatac acagagaaat acaagatgtc acacacacga gggtttttat caaagctcct
      541 aataatacca cttaattaga aagcaaagct cactaatgtt ccttctgaga gctcctcaga
      601 atagtctttc tctggcttta gtcatttctc ttcagctaaa cattgtctaa tgactttatt
      661 agtgatttca aaggctagca aaggctacca ctccactctt ttct
//
LOCUS       KCLJ01002681             664 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 299247cal ultra-conserved element locus
            uce-4089, sequence.
ACCESSION   KCLJ01002681
VERSION     KCLJ01002681.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 664)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 664)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..664
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="299247cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>664
                     /note="ultra-conserved element locus uce-4089"
BASE COUNT          184 a          147 c          123 g          210 t
ORIGIN      
        1 tcctaggaag aaaacaagga tatgtctttt gagatcacct ttcaccttct tcctctagaa
       61 aggcatgctg ttaaaagctt cagtctttta tggctctaca agtaatcttt ctgtttaaaa
      121 agcatgcatt ttcatagcac ggtcatcagg aacttcaacc tcaaaggctg cagattgggc
      181 tctactccca aaagtgaggg gtgaatgtaa cactctcttt attactagga tcagtcaaga
      241 tctggctctc atcgcacggg aaatcaacga tgtagcagga gagatagatt cagtgacttc
      301 atcaggcact gcccccagta ccacagtaag cactgctgcc accacccctg gctctgccat
      361 agacactaga gaagaggtag gagatcttca tggagaaatg cataaggttc ttccttttct
      421 ttatttcttt tgcttttttt gcatagactc cactcaaccc gtatgcatga tctcatttac
      481 atttcaacaa acaacccaag agttattttg tgaacatagc ttgtcaaaag gcatactatc
      541 tgtctgtctc tttttttcca cgaaacatag gacaaggtag tcatttgttt tttgcttgtc
      601 tgtagcctta gatactaagt gcatttaaag acactagtgt gtatgcactt taattctttg
      661 ctta
//
LOCUS       KCLJ01002682             778 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 299358cal ultra-conserved element locus
            uce-6571, sequence.
ACCESSION   KCLJ01002682
VERSION     KCLJ01002682.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 778)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 778)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..778
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="299358cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>778
                     /note="ultra-conserved element locus uce-6571"
BASE COUNT          207 a          210 c          171 g          190 t
ORIGIN      
        1 aaaagcaagc gcctcattac tccccatctc aagcagcttt gacagaggca ctggaactca
       61 taagctgcgt tccactgggc tgggatgggc tgttttgcag ccatcccgca cgctcaatgt
      121 cagccattag ttcttcccaa tcgggcatca atgttcaaca cacacccgaa aaaatatata
      181 atactggtaa taataataac aatctgcagc ctctccgagc ttcaatactt gaagtatgag
      241 tcaaagcagc agtttcactt ttcactcggg aagctgacaa gcatgactag agggggaata
      301 aaataacatt cagttcgcat aaatatcaag cgggctgctt gagactgatg ggccaggaat
      361 gtattcttag ccatcattct ggcagacagg cccaaggaca ctcataactt attttacaat
      421 catttagttt cagctcaagt ggaaaacgtg acaacttatc tctgctgaca agatgccata
      481 tcgaacctta caattaactc tcccccgatt atctgcccag cccatcatta gctctgtgcc
      541 tcttgatgga ctgcaggggc acagcttccc ttgatgatgg tcatcatttg cagggtgcac
      601 agctccgtga caccacaccg aggacaaaac tctccccttg ccacggagct ggggggcaca
      661 gcctcgtttt tgtgactgtt aagtgatgag cagcaaaacg ctgctcggag catcctcgtg
      721 tttcagccca cgcctgctgc tgtccaggag tgaggcagag atgcccacgc tctgtccc
//
LOCUS       KCLJ01002683             716 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 299468cal ultra-conserved element locus
            uce-3353, sequence.
ACCESSION   KCLJ01002683
VERSION     KCLJ01002683.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 716)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 716)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..716
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="299468cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>716
                     /note="ultra-conserved element locus uce-3353"
BASE COUNT          232 a          146 c          115 g          223 t
ORIGIN      
        1 ttttcacttt gttgctaaca aatgctctag acaaagcagt cagcaaatgc atttattatt
       61 aaaacaaact tctttaaaaa ttcaaatctt gacttattaa aaaaataata aagactttta
      121 tgtagtttag tatgcaagag ttagattgct tgacctctct tttaatgact taattagctg
      181 tactaaagcc cagctgggcc tctgctgaca acatagctag atatttcaat caggcagtgt
      241 tatggagaat aagtaataaa tgctaccttg tcgccataca gtcccaaacc agagtgcatg
      301 ctggtaatgc taaatttgat cagtatgcct catatttcaa ttagtcgtgg tctgaatcac
      361 taaaactgtg taatgtgtat gaattcctga tatcagatac agagctacag gctcccacag
      421 ttagaaccca ttgagtttgc ttttattagc agccaattaa tggccaaaat ctgcattgct
      481 tttaaaattt ataacctcta ttccagctgc atccatggct cctagtatac tgtatacaat
      541 cagatccata tcgctgtcac aagtcaaaca gctgcaaact gtattctgtc tgcagaactg
      601 ccttctatac agaagctttt ttaacctctt agaagttctt ttcaaagccc agcagcacca
      661 gtcactttgc gacaatgagc gatttaatac agaaagaaag aaatctacac caaggt
//
LOCUS       KCLJ01002684             701 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 299578cal ultra-conserved element locus
            uce-6351, sequence.
ACCESSION   KCLJ01002684
VERSION     KCLJ01002684.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 701)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 701)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..701
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="299578cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>701
                     /note="ultra-conserved element locus uce-6351"
BASE COUNT          216 a          120 c          150 g          215 t
ORIGIN      
        1 gcaataatta gacaagtgca cccttgtgac caagctaggg tttactgatg gtcactgtca
       61 cctcatgtat tcaccaccaa aaagaaaact aaataaacag ttttaaccga gccctgggat
      121 aaaggctatt ttcaatttta cctttcacgt tttaattgta tagcaataat tttgcaatag
      181 agttgccgat ggcaaacatg caaaagacat taactttatt tatgttttgg attattaatg
      241 tggctgttaa aattcctcca gttagttttg attgaattgt ttttttgtgc gattctgtcg
      301 tttaatggag cggtaaataa gaatttctga taatgagccc aagcatctgt cacaacaacc
      361 tggcgctggt tattaacatt tccattaacg gcagggtggg cagtgataat atggaaacca
      421 cacagttaga acaaaataaa tagttggtgt caggctgagt gggtgttaat tactttttta
      481 ttttataact ctagggagta ttggtagaaa agtgtgactt atgaaggtca ttctctctta
      541 agaaagaagt ctccagagga gcagctaacc ggcgctatcc agtgcaagcg gtgaatattt
      601 tatcgcttct atttatggcc cagaaagggg cagagagaaa agagacaact ttctcacact
      661 atgaacacag agaagggaga agtggacctt tgtcctgcct t
//
LOCUS       KCLJ01002685             526 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 299689cal ultra-conserved element locus
            uce-7721, sequence.
ACCESSION   KCLJ01002685
VERSION     KCLJ01002685.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 526)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 526)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..526
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="299689cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>526
                     /note="ultra-conserved element locus uce-7721"
BASE COUNT          148 a          135 c          120 g          123 t
ORIGIN      
        1 ccacaactgg tttcttcagc taccccctaa gaaggctgaa aaaaagaaaa gccccagctc
       61 ccaccttggc tttgaaatct tttcctgacc agctttgttg tccatatttg tgataaaaaa
      121 ataataaaaa gcattcctgg ctgtttaacc gagagaagcc ctaattgatt cccacagtca
      181 ttaacctgca ttttacctcg gagagtggta gttaaggaag tcggcactgc tatttataac
      241 tcatctcaaa ttgagggcag actgcctaaa atctaacaca tcccagctgt actcctgttt
      301 gaactggggc caagggaatt ttttaaagca atcttggcac tgaatgaatg acaccaacag
      361 tatgagcgcg tgtggttgtg ttgtggtgac gtagctggag gtggaggagc tcagccccga
      421 gccggagccg cccacccaga accaaacaca ggaaacgtct tttcctgtgc aagcacatgg
      481 caaaagcaaa gccatccccg gccacgaggc cttggacccg cgccgg
//
LOCUS       KCLJ01002686             834 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 299800cal ultra-conserved element locus
            uce-1363, sequence.
ACCESSION   KCLJ01002686
VERSION     KCLJ01002686.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 834)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 834)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..834
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="299800cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>834
                     /note="ultra-conserved element locus uce-1363"
BASE COUNT          290 a          143 c          166 g          235 t
ORIGIN      
        1 tgatgcctga accaccttct cagctaatgg ttatttgtac acagctccaa ctctgtgaaa
       61 acaagcagct tagaagcagc agatctctaa aatttgctcc atttagagag gaaagacctg
      121 ggtgaaaaca aatggtttat gttttcagcc agaaataaat aaggcatgga ctatggctct
      181 ctcatctacg agtgagtttt attaaagagt tagagcaagc tccagtttac aagatattca
      241 gaaccatatg tatgcattaa ttaaaggaat gtggaggagg aggaggggat ctgagaaaat
      301 aacaaagcag cagtgtatgc gtgcaatgat ttttcattct gtttcgcttc agctctgccc
      361 ctgcaacaga ggatctaatc aatctgccgg ctattaagtt tgttaattga taatgcatac
      421 taattaggct gtgcgcagtt acttaagaga ctttgctaag gtgattgtag gcacaagtcc
      481 aaatggagtt taaagtattc tgtgtgaggt taaaacccat caaccagaat agatggattt
      541 tatattataa cagaaggcac aatataccca taagtattta atgtattgca cagttatcca
      601 ttgttactcc taagtctacc taacaattaa aaaaaaaata acctctaaaa aaggtactga
      661 atgaatatgt agatatagta gagatgaagg gaagctggaa ctgaaccagc cttaaaataa
      721 atactcattt tcacacttat gtccactaaa aatagtaggt agttctgctg caagggagga
      781 gcaagcataa caagaactca tcctaatcta gctttatgaa ctttgacaat aagc
//
LOCUS       KCLJ01002687             555 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 299913cal ultra-conserved element locus
            uce-4396, sequence.
ACCESSION   KCLJ01002687
VERSION     KCLJ01002687.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 555)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 555)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..555
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="299913cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>555
                     /note="ultra-conserved element locus uce-4396"
BASE COUNT          211 a           97 c           90 g          157 t
ORIGIN      
        1 aaaaagattt aattaaaaac acaagatgaa ataaatattt caggcaacca gcaacaaaat
       61 gggaaaatac catgtgtttg gagttttagt gccctctgag tgctggaatt tatttgcagc
      121 aagcagaaaa tagacagcaa gcataaaaat tcagcagatt cccgctagta aaattattta
      181 tcaagctaac aagggaggaa cccttctagt agcaacaagc cagcaaggaa aagacgtgcc
      241 tttatatttt acctttgggt tagcacacta gtaaaaatgc caactgacaa gcacttcaca
      301 taaacatttc tttctaaatg agctgccttg ttagtaagca aaggagcagt acagtcaaca
      361 gacagaggat gaatactaca ttgctgcata ttacaggaaa atataaataa aaataatgtt
      421 gatgcataaa tgactttaat gaattaacac ttcattttgc atttaaatta actgctataa
      481 atctatctta gcttcaatcc ttccaagaaa gaatacatgg cagttatcta ttatttacat
      541 ctttcttacc tctgg
//
LOCUS       KCLJ01002688             749 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 300022cal ultra-conserved element locus
            uce-7869, sequence.
ACCESSION   KCLJ01002688
VERSION     KCLJ01002688.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 749)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 749)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..749
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="300022cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>749
                     /note="ultra-conserved element locus uce-7869"
BASE COUNT          209 a          137 c          150 g          253 t
ORIGIN      
        1 attccgtctg ttgaaggctt atttagttct ctttctcaag agcacagaaa ggactaaaat
       61 gaatttgaaa atgtttacag ctaggtttct tatgacccag gtcatattgt tgtcttgaat
      121 cagttttctc ctcgtcctca actgaaaact tcttaatctt gcagggttaa ataaaaggag
      181 gaatacagtg caaggaagat tccttttatg caagaccggg gatgactgaa agtgcctgtg
      241 ggcatttggt ccccattggc tctctcagcg aatgcagtga tgcccacgga tagcctgtat
      301 tgttgtcagt taaatgggat catgagtgtc tgaaaggtgt ttgagaatga actgaaaatc
      361 attttcacaa gtggatgatt acttctgcca catgttaacc gaactctgtc agagtggccc
      421 agatttttga gactgcatta attgctcttt caaccttgac tgaggtttct ctttaagaaa
      481 ggcctttgct ggactaaact gctacacgta ttgatttttc tttctatatt tttttcattg
      541 tttgtgataa atgaagcctt ttacaagtag agaatttatc attcaaaatg tagatagatt
      601 gcttcattcc ttagaataaa aaggctggtc taaaaatgat ctctgtagaa ggggtaagtc
      661 cattctcatt tctccctcag tgaatagctc cggtattcca cacacaatta tgctttttca
      721 gctattcatt agtgctgaca tcaaaaagt
//
LOCUS       KCLJ01002689             537 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 300131cal ultra-conserved element locus
            uce-4632, sequence.
ACCESSION   KCLJ01002689
VERSION     KCLJ01002689.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 537)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 537)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..537
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="300131cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>537
                     /note="ultra-conserved element locus uce-4632"
BASE COUNT          170 a           96 c          117 g          154 t
ORIGIN      
        1 gaccaccatc tcttagcatc tggatttccc ccaaagcttt aaatcagggc agagaacttt
       61 gcacagtgca gtgtgctaca gccacttgat ggcagccttt gatttggtac atggctcatt
      121 agccggagca cagtgcagtg tggctggagt atttgtaatg gaataacacg taagaactaa
      181 agactgcaag gtatctggtt aatgtagaga tgaaatgaat gaaacagcaa ggctaagctt
      241 tcctgaccct tcatgagaga atagatgaaa aaaggaagaa tgaggtattg tgccgaaggg
      301 agatgatgaa attcaagatc cacacacata atctctggct cagcctctga aatgttaatc
      361 cctggctaga attatttgag ctgtagattg caatttatca tcaaaatggc actgtgtcaa
      421 acaatacttc ttgtatgtgt gatgtttaga actatccaat tttaatataa aatgattcac
      481 agagtgctgt ctaacattta agtagcaact cgttaagctc aggatatttt tgcttat
//
LOCUS       KCLJ01002690             659 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 300238cal ultra-conserved element locus
            uce-5586, sequence.
ACCESSION   KCLJ01002690
VERSION     KCLJ01002690.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 659)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 659)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..659
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="300238cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>659
                     /note="ultra-conserved element locus uce-5586"
BASE COUNT          148 a          152 c          181 g          178 t
ORIGIN      
        1 gtctgctatg agctgctggg gttgttcact ggaggtttag ctttcaagac tcttgctgtc
       61 aaaatatctg gtaaagctgt cttgttgcct ctctctttgc tcacaccttc tgttctgctg
      121 ttccccttca gcccgctctc tgtgcatcta atggaagttg gtaatcccgt taggtgcttg
      181 cagcgggtgc tgccgaattt gcttgcaacc gcctgtgcca ggtcgagtgt cattgccagc
      241 agcactcttg gcgggatgaa ggttgcatta gcgaacagta attgaaatgc aaaataacat
      301 tttgatcgag cgagcaggct gtttatttat cagatcaata gccaaaatgc cccatctgga
      361 gaagtcagcg tgataacaag tgatagcatt ccaagggcaa agggaacaag ctcagcgggg
      421 aggacaccgt cagggtgcgc tggtttcact tgggtcacgc caggccgtca gttgctgaaa
      481 tttttgggtc cctgcttggg agagggcccc cctcctagtt gcatcagcaa aggtttcctg
      541 acctctggag agagaacaag tttaaatatg ggctaggaca gattgcagac gtgtaaagtg
      601 aggtcttctt cctcccatgg ctagactgag gagtgtgcct caaggtgcag actgcagat
//
LOCUS       KCLJ01002691             822 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 300347cal ultra-conserved element locus
            uce-1576, sequence.
ACCESSION   KCLJ01002691
VERSION     KCLJ01002691.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 822)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 822)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..822
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="300347cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>822
                     /note="ultra-conserved element locus uce-1576"
BASE COUNT          270 a          161 c          140 g          251 t
ORIGIN      
        1 aaggcactat tacacattga actgattatt gttgtttgtt gctgttaaca cagacaagaa
       61 accctcctgg cagggaaaca acttctttgc taataagtat tcataatttg tatctcagca
      121 aaagatgtaa acatatatta tcattaaata ggctgtaatt ttaattgcct ataaatgtta
      181 ttaattctga ttgtgattat tcaataggta ataaagataa aggctgtcaa aattaattaa
      241 gtacatattc attaaattca aggtagcttc agtttcttta ttgcacaaat acaattaaca
      301 cttaatctga atctcagtaa gttacataat catgtgactc aaaataaagg gaggatacaa
      361 ccttggcctt ttacttttta catgggaaaa cattaatgat gctgacattg gagacaatta
      421 gacagtgtcg gccaattgtt tttagtcagc tttctctcac atctgtggtg tctacaagca
      481 agaagggcca ttgtttctgc aggcctccgt cgcgctttgg ctctttgtgc taaccgtcaa
      541 tctcttgctg aatatcaaag ctgtgaggaa attagaacag accagctcta ctgcaccaca
      601 ctaaagctta gcagggtgca tccactatgc tactaattag gtagtggcca acaaaataac
      661 ctgtcaatgc gtgcttgcca tttcccacac acctgcattt catacactaa taagcgtaca
      721 gccgcggaga gaaaggaata actgctgaag tgtgaaaaat gaacaaaata taacaatgtt
      781 tctctcccca cctatactac tgccaattac catttaacat ga
//
LOCUS       KCLJ01002692             680 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 300456cal ultra-conserved element locus
            uce-3978, sequence.
ACCESSION   KCLJ01002692
VERSION     KCLJ01002692.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 680)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 680)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..680
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="300456cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>680
                     /note="ultra-conserved element locus uce-3978"
BASE COUNT          211 a          122 c          142 g          205 t
ORIGIN      
        1 aagttgttgc aaatagaaca tcttggggat gttccgcttc tgaaatatgt ccttgaagta
       61 gcatacataa aaggtgggtg gatacttcga aaagcctgga aaatttacaa taagtgctat
      121 acggacatta atacacttca ggaaatatat cagaagaaaa caactcagga atccttgact
      181 tctgatgctg caaatgataa tcatattgct gcagaaggtg taacggagga ttcgctaaac
      241 agactgaaag gtgctgttag ctttggatat ggactttttc atctttgcat atccatggtg
      301 cccccaaacc tgctcaaaat catcaacctg ctgggttttc ctggagaccg cctacagggg
      361 ctttcctcac tgatgtatgc aagtgaaagt aaggacatga aggccccttt agctacgtga
      421 gtagctatat tgaaatgctt tggtagataa cttagtacta aaagtaagta actaaaagtc
      481 aaaaccaaaa agtcatgttg ctttggaaac aacagcaggt tggtagttcg accatggttt
      541 agtaaattca tcactcattc tctgctgtta attatttaca tgtatttggg gttttttgct
      601 gtattcttca gtacctgcag ttctaatgtc ttgtaattta aatgccagca gagtaaacaa
      661 aaactccttg aagactgtgt
//
LOCUS       KCLJ01002693             898 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 300563cal ultra-conserved element locus
            uce-2940, sequence.
ACCESSION   KCLJ01002693
VERSION     KCLJ01002693.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 898)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 898)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..898
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="300563cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>898
                     /note="ultra-conserved element locus uce-2940"
BASE COUNT          293 a          167 c          194 g          244 t
ORIGIN      
        1 gaaaaatgtt tacattctgt ttaagaaaga agacatcttt agagctttta gagtccatta
       61 caaaaacagg aaagagaaca tttagcatta ctgatatgca tttttaaaat tatgataaat
      121 actcataaca tagttttcaa aaacacttca aatgtacagg catgctcgtg atagctatct
      181 atattactct gttaaattta tacaaagtct gcctgtgata gatacgtatg ctagttttaa
      241 atcctttccc ttctcttttt aagagagtca gttttggaac agctgtaaat tagtgatgag
      301 ctattagtga gctgtgtcat tatttaataa aaatggcttc tctcacctta ttttttatcc
      361 aggtccctga caggctggat gaaatgagat ccccatgtag caattgccat ggaaacctgt
      421 gactccccta ctatctcaag gcaggaaaat gggcagagca catcaaagct atgtggaacg
      481 acacaacttg ataatgaggt gccagagaaa gttgcaggga tggagcctga cagggaaaac
      541 agctctacag atgacaacct gagaacggat gagcgcaaaa gtgaaatctt gctgggtttc
      601 agtgtagaga atgcggctgc cactcaggtt acctcagcaa aggagatacc ctgcaacgaa
      661 tgtgccactt cttttcccag tttacagaaa tacatggaac accactgtcc taacgcccgc
      721 cttcctgtct tgaaggacga caatgagagt gaaataagtg agttagagga cagtgatgtg
      781 gagaatttaa caggggaaat agtttaccag cctgatgggt cagcatatat aattgaggac
      841 tccaaagaaa gtgggcagaa tgcgcagact ggagcaaata gtaaactctt ttctacag
//
LOCUS       KCLJ01002694             603 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 300674cal ultra-conserved element locus
            uce-2815, sequence.
ACCESSION   KCLJ01002694
VERSION     KCLJ01002694.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 603)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 603)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..603
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="300674cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>603
                     /note="ultra-conserved element locus uce-2815"
BASE COUNT          229 a           96 c           97 g          181 t
ORIGIN      
        1 cctacaaaca aatcagctta agcctaatga aatcttattt ttgtacatta atgtacaaag
       61 gaaacagttc agggtaaaca gacttgtagt atacattgtt tagagactat tgactttcga
      121 attagcctgc ttttcaaaca tttcacgtca aaaatatagt caaaatgcaa atgcagcata
      181 aacggctcta taataaatgc tcattcaaca tttattcttt ctcaaatcat cttttaaagc
      241 tctttcctgc taatgtctag aagatgtgac attagaaaaa ttgctttgac atgctaaggg
      301 gctccaagat taacaaaaag agaaagaaca agataaagct ttcaaaagac ctatttcaga
      361 ggaattatta cttcctttga aagtcttcca aggttgcagt acatttaagc ttgttggcat
      421 acatgtaaat gaaggactac aaaagtattg cactaaatac aacttgaatt aaaccttcag
      481 gctaatgtta agggataagg ataaaggcca gatcctaggc tagtaacaac tcatataaat
      541 taaagttctt tatttgagga tgtgagggag aaaaatcaat acaagaaatt ataaatgtaa
      601 ttc
//
LOCUS       KCLJ01002695             504 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 300787cal ultra-conserved element locus
            uce-6943, sequence.
ACCESSION   KCLJ01002695
VERSION     KCLJ01002695.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 504)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 504)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..504
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="300787cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>504
                     /note="ultra-conserved element locus uce-6943"
BASE COUNT          162 a          102 c           96 g          144 t
ORIGIN      
        1 aacattgact ttgctgccca tctgaaatgg tataatgttc gctatttcta tcatgtgggt
       61 atcagttcca agttggaaac cagccttctc tcataattca agctggggct atactgatgc
      121 aaaccttctc agatattata agccagtatg agctcaaaaa aagaattcac tgctcaaggc
      181 caaatagctt caaagctaac aatcctccag agtcagtgtg aaagtgttga aactgtcaat
      241 gtcaacttac accatgcata gtgagtgtaa aacttcaata atgacatcat ggagaaaagg
      301 acaaagggca ggcactacac agaaaagtgc cagtgctctt caaatctttg aaaccttcaa
      361 ggatttatct ggactaacac ttctacacat agtcattggg gtcttaggct atactgatta
      421 aggatttagc ttattcaaag gctctcactg atagcaagga tgacaaggtt tcagcagtta
      481 tattggattc cattagcttt cact
//
LOCUS       KCLJ01002696             322 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 300894cal ultra-conserved element locus
            uce-7691, sequence.
ACCESSION   KCLJ01002696
VERSION     KCLJ01002696.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 322)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 322)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..322
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="300894cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>322
                     /note="ultra-conserved element locus uce-7691"
BASE COUNT           96 a           71 c           52 g          103 t
ORIGIN      
        1 tcttagtatc ctagtatttg cactccgttc ttctaacaaa agacaatttg cgcgtgtgcg
       61 ctcttgctta tcgcctcatc tggcagccac tttccggtcc agcagacact aacatctaat
      121 gagacaaact tcccattttc agactaatca gtcggctgca ctaattgcaa atgcaaatat
      181 gcaaatttat attaattaat tactctgcta attagttctg cagtcttttt ggggtaataa
      241 atcattgtgc agtggaaggg aaacacgtcc tgtcccattt cactccacat aaaaatttaa
      301 tgtactaatt gaaggaaata ta
//
LOCUS       KCLJ01002697             758 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 301105cal ultra-conserved element locus
            uce-4303, sequence.
ACCESSION   KCLJ01002697
VERSION     KCLJ01002697.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 758)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 758)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..758
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="301105cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>758
                     /note="ultra-conserved element locus uce-4303"
BASE COUNT          266 a          112 c          186 g          194 t
ORIGIN      
        1 tgtcccaatt ttaatgcctg agaaaagggg gggtggggaa ggctgtctca ctgaaagaaa
       61 attaatttgt tttattgggc actgaaaagc caagcctttt gtcaaacaga gaagcaaaca
      121 tatatttgga gggagagcta ggtcactagt taaatgtcaa ggtctgctaa aatcaaaagg
      181 tgggaggggt gggtgacaat gaaatctaag tagaaaacca taaatgtaaa gaaacaccac
      241 gatttctggg ctggggtgga atgagaaaaa tggccaaaga caaagatagg cagcctgggt
      301 ctggaagtaa ttatggccaa gtgaagacaa ctgaattcca tattactttg gtggatgtct
      361 gtaaaggcag tttggggagg tattttggta aggtttactt tttggagctt agcaacataa
      421 atttgttgtc actgaactat taaataaaat agacacatgt tggcaaagag tgcacagccg
      481 agggatggaa ctgattaagg gacagcctat gaaataatag cttaaatggg cccactgcag
      541 gattttaata tcccatgaca acactcaatt gtcaaattct gctggagtgt ccaggatgct
      601 actaaaatta agccagaaat tcctagattt attctataca gctaagaaca ggaaatgcca
      661 gtaagctgtg agaatcggag caagaaacaa gaaactggga agaaaagagg ataaatttta
      721 tgagatttct gccattaaat ctataacaaa tgtctttc
//
LOCUS       KCLJ01002698             601 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 301212cal ultra-conserved element locus
            uce-7924, sequence.
ACCESSION   KCLJ01002698
VERSION     KCLJ01002698.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 601)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 601)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..601
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="301212cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>601
                     /note="ultra-conserved element locus uce-7924"
BASE COUNT          140 a          126 c          113 g          222 t
ORIGIN      
        1 gtggaagaag ggagtcatgg ctgggtttgt gctgaagggg catgtatatc tctgaggttc
       61 ttgtttgagg gaagcacctt gatgagcatt tgaagagtaa gtattgcact cttttaactt
      121 tgcttcaggt ctggataatg gagggttgaa gttaatgact aatgggaaga gtaggcagct
      181 gtttctttac aatctaaaag gcatggttcc ccatagagtc ctggtcatat tgtcctcttc
      241 ctcactttgt gtgtctcagg tgccccacgc ctttttttga aaaactaaca ctagatcatt
      301 catgcaatgt gtcattttta ctaaccaact aatgtactaa caccctaacg actcatcttt
      361 gcttttagtt attttaatta acaatcgttc tgttcacaat tttttaattt cctttcttcc
      421 cccttttccg caaagcactc aggcattgga cacgctatgg taaacaaact acattgtctg
      481 gtagatatca ttcttattgt ctcttttttt gggtttgccg tgtgttacct gccttttcct
      541 ccccctacct gctctttcac tgcttccttt aattttattc taatttcatt gaaaacacgt
      601 t
//
LOCUS       KCLJ01002699             611 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 301316cal ultra-conserved element locus
            uce-4932, sequence.
ACCESSION   KCLJ01002699
VERSION     KCLJ01002699.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 611)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 611)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..611
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="301316cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>611
                     /note="ultra-conserved element locus uce-4932"
BASE COUNT          213 a          106 c          108 g          184 t
ORIGIN      
        1 ttcagtctgc catcaaatgg ttttatttct ttacattgac aggaaaggaa ttttaataca
       61 gtgtatttac tttatctgct tgtctttaca aatcactctg caatcccagg gtttggtatg
      121 agacagagag agagaaagag caagaagtag tatttatagt aaaacatggg tagtcaatag
      181 catgtgggaa aacaactgaa tctgaaaatg gtcccaaagg taatttgcaa atctgctgaa
      241 atcccgaaca agctttgatt taaccgaagc ttgaaatggc ttttatttac tgtctattgt
      301 ggaataaatg acatctcata aacaggcttt atccattacc acagaatggc gatcactgtg
      361 ttagggacat tttatcctct tgatataaaa caagatatgc tgtagtgtgt tattacaaat
      421 agaaaaatca atgctgagac acacacctct gaaatttcat ttttgcggaa ccccattttc
      481 aaaaaatgta ttctctaata aaaacgtctc cataaccagg gggatttaca aaacactgag
      541 caacaaagaa caataacaaa caatgaataa agtggctcca tcctgagtct ttttgttgta
      601 cattagtcac a
//
LOCUS       KCLJ01002700             415 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 301427cal ultra-conserved element locus
            uce-3337, sequence.
ACCESSION   KCLJ01002700
VERSION     KCLJ01002700.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 415)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 415)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..415
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="301427cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>415
                     /note="ultra-conserved element locus uce-3337"
BASE COUNT           96 a           92 c          110 g          117 t
ORIGIN      
        1 ctgtaacaga ttacatgatg tattattgtt atgtgagtca tgctttaaat gtctgttgtt
       61 tggaactgta ataaaccttg atccatactc caataagacc tacagtattg gtgtcaaagg
      121 aaattaattt cccggctggc ttgtgttttt ctctgaggca gatattgatg agtgtgcaga
      181 ggggatcatt gcgtgtcaca gccattcacg ctgtgttaac ctcccggggt ggtaccactg
      241 tgagtgcaga agcggtttcc atgacaatgg aagctattct cctgccgggg agtcctgtgt
      301 gggtaagcaa tcctctctgc atggccttcc cgaggcaggg gctcagactg cactgctccc
      361 tttaccagag caaagggctg ggaaatcggc cttgatgggg agcacaactg cccac
//
LOCUS       KCLJ01002701             709 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 301532cal ultra-conserved element locus
            uce-3393, sequence.
ACCESSION   KCLJ01002701
VERSION     KCLJ01002701.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 709)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 709)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..709
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="301532cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>709
                     /note="ultra-conserved element locus uce-3393"
BASE COUNT          208 a          154 c          125 g          222 t
ORIGIN      
        1 ccattctaaa attcacacca agtgccttga tacctatgaa ctctgcagct cactcacgct
       61 tccagatcaa cccacaagga agaagtttaa acccagtctt tttacccaaa ttcttttcac
      121 tcttccaagt gaagcctttc cttctaggtc atgtgctgtg agcactaggt gactcatgaa
      181 aaccatgtgc tgcattcata ctacagataa aaattaaagt aaacttcact ccgtaacatt
      241 tccagttcat tcacaaacac aggcattaac tccagtcagg agagaattga ggctttgtca
      301 ttcctttttt attgttgtgg attagtgttt cttttaaatg aaaacagccc ctttgggttg
      361 cttgcctggt tagccatggc aggaagacaa acgattttta cagtatcaga catgcggttt
      421 cctgtctgtg tttaactttg agcagaacat cacagccagc tggttcatgg ctcctccaga
      481 caactagata atagcctgta ataattttgc ctttggaatg actgtcatcc agatctattc
      541 tgtacattgt ttcttatgca gcagaacaag aagcagtggt tttgagcatt ccagttttag
      601 agagcaagat gagagctact ctaaaaaagc ctgataaaac agtgatttta ataatttatt
      661 agcagaaaca gagatatttt tcacctgttg atcacagctt tcctttcaa
//
LOCUS       KCLJ01002702             588 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 301641cal ultra-conserved element locus
            uce-7222, sequence.
ACCESSION   KCLJ01002702
VERSION     KCLJ01002702.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 588)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 588)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..588
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="301641cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>588
                     /note="ultra-conserved element locus uce-7222"
BASE COUNT          171 a          124 c          120 g          173 t
ORIGIN      
        1 ctgacacagc tactaaaatg atgtattctt tactgctttc taagaagatt actaagccag
       61 ctgacccaaa cagtaattag acatcattca aaattaataa ccactacgat gataacaaag
      121 ttcttctgat gggagaatca ttttaattaa tttaatcctt gttgaaagat cagctgtgca
      181 cagtcctgct caccagtggg gcccatttgt ccctgtctat ccctgtcacc taaagccagt
      241 gaatatgatc agtagccagc acttagggaa caataagaaa cagattgtac tgtcaggctt
      301 cattaaagat catcattagt attccaattt ggaaacagtc ctaacctttt accaattctt
      361 ttcagctgct ggttcagctg ctaaatgtaa gttgggtctg gctgacgcct gtcaggcagc
      421 agcttaagct cgggggttat gcaaccaggc tctaaatgat atcatgtgca gctgctagag
      481 catttatggg caatgaaact ttcttaaact tggagcttag cgatgatgaa tggaaatgaa
      541 atggatatgg cactttcttt catcccctgc tgcgtggtcc caagggtg
//
LOCUS       KCLJ01002703             465 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 301752cal ultra-conserved element locus
            uce-2419, sequence.
ACCESSION   KCLJ01002703
VERSION     KCLJ01002703.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 465)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 465)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..465
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="301752cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>465
                     /note="ultra-conserved element locus uce-2419"
BASE COUNT          126 a          105 c           90 g          144 t
ORIGIN      
        1 tttaccccat ttatcaatgc acaattactg tcactattgt gttgtgtcat taggcgtaag
       61 gttacaagtg ccagtcggaa taaaaaaatt gcagtaatgt tggcataatt tttcattatc
      121 atcttcatta accacagcta gtgggagtaa gagtttatcc ttgctgttgt cattgtcatg
      181 acaacgcttc caaagcttgt ctgccgagag ttcaccagat acaaaaaact gaatgtcctc
      241 attattccac ttctcacact ctcacccatg ccaagggtga tctgagatgc acagggccct
      301 tgatttatcc cctgtgattt ctcttgacag cctggtatgg tgtctcagct taaggcaatc
      361 ggtctgattt cacagtttaa ttactgctaa tctgaaggag cgtggccaat gctaatgagc
      421 cagcagcaat caaagcagta atggctaaac tcaccctgtt tcatt
//
LOCUS       KCLJ01002704             481 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 301861cal ultra-conserved element locus
            uce-3733, sequence.
ACCESSION   KCLJ01002704
VERSION     KCLJ01002704.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 481)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 481)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..481
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="301861cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>481
                     /note="ultra-conserved element locus uce-3733"
BASE COUNT          154 a           97 c           85 g          145 t
ORIGIN      
        1 tccctccacc catgccccca acattcacac tacactgtct ggctgttgca ccccccttta
       61 tctgcctcaa ccaatctcca aatgaatgca tgtctatcat ggccttagct ttgacactct
      121 ggatatattg attaatagtt gccctaagct ccttttagca aatcaaattt tcacttttag
      181 caaggatttc gcctctgatt tattcagcaa agtgaaatgc actaaattga ctttgacatt
      241 cagggaaaat ggctgaaaaa caaagagggg aggaaagaga tataaattgt gtggcagctg
      301 gagacttcaa gcataaaaga ggccgttttc tatagaatat cactggttaa tttggaaaca
      361 ggcatttaaa caggagtata aattattttc ttaaaattag attagactga gggtttggga
      421 tatagtaagg tttacttagc aaaatgcaat atattcaacc caaattcatc acttgctaat
      481 c
//
LOCUS       KCLJ01002705             653 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 301971cal ultra-conserved element locus
            uce-4593, sequence.
ACCESSION   KCLJ01002705
VERSION     KCLJ01002705.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 653)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 653)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..653
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="301971cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>653
                     /note="ultra-conserved element locus uce-4593"
BASE COUNT          202 a          138 c          108 g          205 t
ORIGIN      
        1 ttttttcaac ctctgggaag gaacaggatt tgcctccttc catgtgtata tttattagta
       61 attttgcacg gtataattga agcctggctt tttaccaatc gaggcttaag aggaaaacta
      121 acacaatgta atgttttgtg tcttgtccat gtaaaccagt cactgaaaag gtgcaaagca
      181 cttctaaaag tacgttttct gaaattcaaa gccttttaag aaaggtacac aatgcaagaa
      241 tacgcagctg caattttaaa aaggctactg ctcctttaat gcccagctgg tcctgagatg
      301 taataaaatt gacatattga ttcctttgaa tttacaaatg cctgtttcat aaactccatc
      361 tccaaagcct aggcatcttt agagcactgt catttttttc tccaaatgga tcaattatgt
      421 gcccacgtaa tcctgttacc tgtgaaatcc atgcatactt ctcccatttg ctgcagttcc
      481 caggcggaca aacttgcatt atgtacgcat aaacaaacag agcattttcc tgatattagg
      541 gattgttttc aaagtgaaaa gcaatctcct gggtccttta ctccccatac atagtgtggt
      601 gttcctccaa gtaacctata attattacac aacacagcaa atcattaaaa aaa
//
LOCUS       KCLJ01002706             802 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 302082cal ultra-conserved element locus
            uce-7383, sequence.
ACCESSION   KCLJ01002706
VERSION     KCLJ01002706.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 802)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 802)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..802
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="302082cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>802
                     /note="ultra-conserved element locus uce-7383"
BASE COUNT          251 a          124 c          157 g          270 t
ORIGIN      
        1 tgaaggcatt tcagctataa attatgcgct gaaaaatgac aatgttccct aatttgtctg
       61 tgtatagtga ggcatgatta tggagctggg ggcaggggga gactgtggta cattcttcta
      121 atgggagttt tgtaagaaaa agtttaatac acagctcttg tctgaacaaa cctctcactg
      181 taaaatgttt acctttaatg acatgcacta ttatttcatg attattttaa aatacactta
      241 aagagtttta catgttaacc agctactaag aatgccttaa tagacaacta atttttgtta
      301 gaggtgtctc gacaatttga attttatatg catgcattat gttttcttaa aatggggaaa
      361 ttatgcatct gaaggaatct gtctagaata atggggttct atagaggtta ctttaatcac
      421 gttcaccagc agttatagct gttttacatc ttatttgcaa caaaagggaa ctctaattat
      481 cttccaaaag agcataaaat ggtgtgcttt gctgctgatg taatgttgat tcgtgaatgc
      541 tgctgatcgg aactgacaac taaatacatg tcacactttt aagaaatcag tggtggtgac
      601 aggataaccc tcttttgtga cctggggacc aggagatgag gtatatattt gcttgctaag
      661 tagaaacaat tcacagtttt tcactttgaa ataaaaatca aaatgctgtt ataaatggtt
      721 atcgatgatt tttaacaatg catcggttct gttatgactt agaagctacc ttctgtaaaa
      781 cagatctact gcttgcaaat cc
//
LOCUS       KCLJ01002707             493 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 302196cal ultra-conserved element locus
            uce-3583, sequence.
ACCESSION   KCLJ01002707
VERSION     KCLJ01002707.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 493)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 493)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..493
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="302196cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>493
                     /note="ultra-conserved element locus uce-3583"
BASE COUNT          182 a           72 c           82 g          157 t
ORIGIN      
        1 aaaaactttt cttctaatta cagtaagatt ttattgaatg cacattatac atatagatca
       61 taataaaaaa aagactatta agattttaca gttcaagatt ttacaggcaa tgggaacagt
      121 ggaagcctaa tgctttctga gaatcatatc tgcattagca agataaagga caatttagga
      181 agattacaaa agcaatgatt tagagtacaa cataaaaatc tgctgagaac taattcgcaa
      241 tgccagctgc tgctaagctt cttaatcttt atctagttca attaaaatct gaatgtttgg
      301 gatttcatta acaactgggg acttgaaaat tacatgcact tttacactgt attcaactgc
      361 ttatgcacgt tactggaagt tgcccgaaat gtcttcaggt agacttgaga tataattaaa
      421 acttaagtac ttaaaggata atgcagaggt aaaagaggat tattttaatt tttctgtcag
      481 atccaattga caa
//
LOCUS       KCLJ01002708             367 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 302304cal ultra-conserved element locus
            uce-1922, sequence.
ACCESSION   KCLJ01002708
VERSION     KCLJ01002708.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 367)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 367)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..367
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="302304cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>367
                     /note="ultra-conserved element locus uce-1922"
BASE COUNT          115 a           67 c           81 g          104 t
ORIGIN      
        1 aaaaaaaaaa aaggttgcaa gctgtaaaca ttataaacat attcaaataa gcttaacgca
       61 atctgccatg cttatttctg cctagatcat ggaccagcga aatggttaat gcaaatggat
      121 ttataatttg ctttgggggg ccagtttctt ctccttattt attagcccag ctgatggggc
      181 agatttgatg aggcacttct ggaataattg agtcatcaca caaagaaggc tgctagcatt
      241 cagagtggtt ttatcagcag caagcaggcc tgattactga caattacact ctgatccggt
      301 gatggaggag aaagagccaa cgagtgggaa atgtccgtgt ttctatccag gaataatttc
      361 tacattc
//
LOCUS       KCLJ01002709             718 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 302412cal ultra-conserved element locus
            uce-2613, sequence.
ACCESSION   KCLJ01002709
VERSION     KCLJ01002709.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 718)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 718)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..718
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="302412cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>718
                     /note="ultra-conserved element locus uce-2613"
BASE COUNT          186 a          156 c          191 g          185 t
ORIGIN      
        1 ttatccagca gaaggtgcaa gagtgtcacg ccctgtttcc ctctgccagc caagaagatc
       61 caccaaaggt cattgtcaag gctggttcaa gctagttcca gttgtgctgt taaaacccag
      121 aaggtgcatt aaggcagctc ctcgggccgg atctccatcc ctgggcgcct gtctgtgccc
      181 cacgggcctg ttccaatatt ggatgacatg tttacaagtt ctaacatctc actctgtgca
      241 actgcagggc ttcctcgccg gccgagagct tgcagcgctg tgtgtctggc agagatgggg
      301 gaattcgata accttccctc tttgggtctt agggcgagct gaatgcgtct ggcctgccaa
      361 ggcacaattt aatgggcttc tgaaaacact caaaaggcag acagaaatgt gtggatgggc
      421 aggcagccag gctgacctgg gggatggctg attttaagca gggtaaggtc gtgaaggaat
      481 gtttgaggac aaagctggct gggggagtgc actgaaagcc taatgtttga ctggaatgga
      541 tttacggagc ttgaacctga ctctgtaact taagagcaaa agcattccca cctgtccagc
      601 tttaaagggg aaatggaaaa tgtaaagaat atataattaa tttcaattac ttttgcttgg
      661 atattatctt tatttcctca agtttaagat ccagtgtagg aactgtatag aaaacagc
//
LOCUS       KCLJ01002710             688 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 302518cal ultra-conserved element locus
            uce-7369, sequence.
ACCESSION   KCLJ01002710
VERSION     KCLJ01002710.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 688)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 688)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..688
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="302518cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>688
                     /note="ultra-conserved element locus uce-7369"
BASE COUNT          198 a          129 c          143 g          218 t
ORIGIN      
        1 tggaagataa ccaaaatttt cacttcactt caccgggagg aatttggagc atcagcatgc
       61 agaatgttca catgctcagg gcattttaag ctgcaccttt agtcttcttt ggcactttag
      121 accagtgacc aaagccaggg agcctgttga atatgctact atatgctttt tatttttgtg
      181 ggcatcatgc aagaatggtt atacatttcc ctgaaccaat gtaatataaa agatttactg
      241 ttacagtttg tgtgtggcca ggcaatggca tatggaaaac atgtttcctg ctatttaatt
      301 taattactct aatcacgtgc cagccccagg catgtcattc tggacctctg aggctctttg
      361 tctgtcaaag agatggacaa tatcttggct ttgtttagtt gctccgcagg ctgcagataa
      421 aaccactgaa atactgactg tttgtttaac caaaactttg cattttaacc atttggcttt
      481 gattctttgt tttacaagag aagatgacat tttggccttg gtgagctgaa aaggaaatat
      541 tagggatatg aagaagaact gtcactttca gggcttaata gatgaaaaag aatactctag
      601 ccttctggtc agaaatcagc tttgttagca gaaacctaag acacacatca ctgttatttt
      661 agaattgcct attagcaagg gcagctgg
//
LOCUS       KCLJ01002711             603 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 302630cal ultra-conserved element locus
            uce-6586, sequence.
ACCESSION   KCLJ01002711
VERSION     KCLJ01002711.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 603)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 603)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..603
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="302630cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>603
                     /note="ultra-conserved element locus uce-6586"
BASE COUNT          149 a          142 c          132 g          180 t
ORIGIN      
        1 tgaacaccac tcaggaggat ccaaccagag tccagctttc ccttgaaaaa gccttgggtg
       61 ggaatctggg tttctagctc tgctgctttc ttggcgtatc cagtctccct agggagagac
      121 ctgcttgtgc tcaccccacg gcgagccttg tgcacagctc cacgcagcga agcagggctc
      181 tctgaatgca aatttcattt ctgagccact ggcgctgttt caagagccgg cagcctccga
      241 gccctttttg gtgttacata tgtaacagcc tcattgaact tgacatgtca aattcaggcc
      301 atttgtgcaa aatctccctt taataatacc gtttcatttc gctcaaatga gacttgaatg
      361 catgtaaaat ggaaaaggat atttaagcgc taacattagg cagatgtctt gccagaggcc
      421 gattgaatat atgagatttt gaagtgctta acacgttttc ggtgctccct cttagaatat
      481 gtcacctggc tttctttttt ctccctctct ttccctttta agtgaagggt ataaattgaa
      541 agaaaacaaa actacaagcc ttggttttat ggggtttaac tcttgccagg caagactgtt
      601 ggt
//
LOCUS       KCLJ01002712             737 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 302741cal ultra-conserved element locus
            uce-7761, sequence.
ACCESSION   KCLJ01002712
VERSION     KCLJ01002712.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 737)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 737)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..737
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="302741cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>737
                     /note="ultra-conserved element locus uce-7761"
BASE COUNT          171 a          177 c          173 g          216 t
ORIGIN      
        1 aaagtgggcc aagtccagcc ctggtgtaag cagctggtgg tacactcagc ccagtatgct
       61 taagcaatag cgaattttta tctgtgtctt tcacctggca attgtccagg tgcccgggct
      121 ggaatgtgag gatgttggag gagaattagg ttattacatt tcctccttaa ttcttcatca
      181 gggctgccgc ctgtattttc tacagaaaaa tcaatgcatt ctgattctgt aatttcccat
      241 ggtgcctcgc cgggcgcgca gcgtgccgtg ggaggtgaca tatccggtca tggcagcttg
      301 aactcttttt tccagtgaaa gaattcattg gaatttcaca acctttgcat gcttttgtga
      361 aaacactcat ttgtgtttgc gccaacctgc taatggcgga tgccggggct cgcgaatccc
      421 acctacattc ggtgctcgtt atggcatgga atgtgccgtt aataatgcat ctgtgaaact
      481 cagctgcgag ggagccaagt aattatccca ccgtagcgtt ccctgcttca gtgtcatcac
      541 aactggggct tcattaaaag tcctaacagt agagatgttg tgtggtgcag cctgtatata
      601 tattttttca tttaaattat cagcaatgcc atggctcaga ggtaatttga ctttttgaaa
      661 ccgtggagcc cctgtgaatt tccttcctcc tctccctctc gctgccgcac cagctgatca
      721 gccccagaag aacaaaa
//
LOCUS       KCLJ01002713             265 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 302852cal ultra-conserved element locus
            uce-6337, sequence.
ACCESSION   KCLJ01002713
VERSION     KCLJ01002713.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 265)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 265)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..265
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="302852cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>265
                     /note="ultra-conserved element locus uce-6337"
BASE COUNT           75 a           46 c           76 g           68 t
ORIGIN      
        1 ttccccctaa ttttttgcag acttttgccg cggatattta ttataaccgg ggaaacaaag
       61 cgacggtctt ttcccattct tacaggattg tctttgtcta gctgcttgtt ttgatgggtg
      121 taaaacaaat aagattagac tgagcagccg aactgaaagc gatagctggg aggaaaagcc
      181 aatgaaaggt tgccggggaa acgagcatag gggaagctga gtgggggagc aggtggcaat
      241 catgtgggaa tactgcaaac agtgt
//
LOCUS       KCLJ01002714             690 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 302958cal ultra-conserved element locus
            uce-2790, sequence.
ACCESSION   KCLJ01002714
VERSION     KCLJ01002714.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 690)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 690)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..690
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="302958cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>690
                     /note="ultra-conserved element locus uce-2790"
BASE COUNT          192 a          138 c          155 g          205 t
ORIGIN      
        1 gttgttgctt ataaaagtgg aaaatggacc tgataaaaat gtttagtctg cggggctgtg
       61 ttttatttat catatcacaa tgttttgttg catcatggtc aaaatagaag cgaccttgct
      121 tgttcatgag tgctcaaagc atagagataa gaggcaaagt aatagagtac aatagaaaga
      181 gtgtagtgta attatttgtg gcttgtcaag tgaagccctt tcaggcccca agtgattcaa
      241 atctgggaac tctgcacaat tctgtacact aaccatagcc agcatcagag aaatctcacc
      301 cagcttctcc gacagtactg aaattgcatc agtttgtcat gcactgagca tgccagctcc
      361 gcacaatatc atttgcttgc aaatgggcct ggccccaacg ccctgagaca cattctttgg
      421 tatctgactc ttggcctgtg atttgtcatg tctctagtgc tatcggcgta aagtaatttt
      481 aatagattct gatggtttgc ttgtggaagg taaagaatgc tctacagatt gtgtcaggta
      541 gctttctatg gcatgcagtt tggtggaggc cctcatgatg gtgatagcca aacaaagact
      601 atggagaaat gagaacccta ttttgaacag tatttaacac tgcccttcct gctgtggaca
      661 tccttgctaa ctcagcaggt ccaagaactt
//
LOCUS       KCLJ01002715             485 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 303064cal ultra-conserved element locus
            uce-5132, sequence.
ACCESSION   KCLJ01002715
VERSION     KCLJ01002715.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 485)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 485)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..485
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="303064cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>485
                     /note="ultra-conserved element locus uce-5132"
BASE COUNT          155 a           91 c           99 g          140 t
ORIGIN      
        1 cagaacccag gtgggcattt gcctctgaag atctgctttg ctttaatgaa ttattgcttt
       61 tcaccatgag gcagaggctg cagcggatct taggaaagct aatttaaatt tcaaggacct
      121 cttagggata gttgctaatg gttatgctaa ttggcatagg gtctgagtga cagttatgtc
      181 ctggaatgat tcgcaaatca cattttcttg gagcttatta gcagactcat taactgtaca
      241 acagtacatt actttcggaa attcagatct aagcagaaaa ttaaaattat ttgctaaatg
      301 acctaataaa attgaataaa atgtgctgag aaagtgaaaa ctgaggtata tcaggactcc
      361 agaatttgta ccattgatgt tcacccattc ctctgggagt agctgggtga gcctcactta
      421 gaaacctgtt tagataagaa aaccaatgaa ctcaaatcaa cagcagcaaa tcccagctcc
      481 ctgca
//
LOCUS       KCLJ01002716             397 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 303176cal ultra-conserved element locus
            uce-3202, sequence.
ACCESSION   KCLJ01002716
VERSION     KCLJ01002716.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 397)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 397)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..397
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="303176cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>397
                     /note="ultra-conserved element locus uce-3202"
BASE COUNT          138 a           58 c           82 g          119 t
ORIGIN      
        1 ttttatttta ttgtttgcta gggagagtca gagtttcgaa cagcactggc acgtagctat
       61 ttcctctctt gtgagaaaga tgggagatga catgtcagag caattctttg tcagaaatat
      121 acatctgcat gaagagagta gagttaaaaa tttaatctgc aaagctattt agagagtgga
      181 taggccttga caggcctccc aaatgtatta aaagaacaag aacagcagag ttatggaaaa
      241 aaaaagctgt tgcaagcaaa cagaatgaaa ctaagctttc ttgacagaat cagtttgcca
      301 aatgacttta aaattgcact atgtcttgta gttttttctt aaatagattt taatttagat
      361 gtgtaaagca gaagaaactt gcttaacttc agagacc
//
LOCUS       KCLJ01002717             577 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 303280cal ultra-conserved element locus
            uce-7483, sequence.
ACCESSION   KCLJ01002717
VERSION     KCLJ01002717.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 577)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 577)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..577
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="303280cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>577
                     /note="ultra-conserved element locus uce-7483"
BASE COUNT          141 a          118 c          126 g          192 t
ORIGIN      
        1 gacattgggg atgtgggatg tgttgattgt ttctcctctc agtttgtgct gtttcctctg
       61 ccttgcagct gtagggctgt gccagggaaa gccctcgaga gcgagcttta gccgctgctc
      121 ctctctcact gcatcattac ctcactccaa acaaagtcct ttttttttgt caatagagga
      181 tgaaaacatt attggattca ggagctcata gtagtcctgt actcagctag gggtgaagag
      241 gatagattta tgaaatggac catttcaaat ggcattatct tcccacagtg aggagcacct
      301 ttcataaatc atgggagagc acttggaaaa gaaagcattt gttattcctg ccatatattg
      361 ccatgtgttc ttgggatggg ggagaatctt ctgtctgcat ttttctttaa ttttatctta
      421 aaactaccaa gcttgacaat atgaattttt agcttacctt tgtttagctg cagagacaca
      481 ctgagcctca gttttctttt gggtatgaag ccaactattt cttacacact tccaatattg
      541 cagggcattt tctgcctcat tatgtagcag gaggtca
//
LOCUS       KCLJ01002718             568 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 303389cal ultra-conserved element locus
            uce-3028, sequence.
ACCESSION   KCLJ01002718
VERSION     KCLJ01002718.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 568)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 568)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..568
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="303389cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>568
                     /note="ultra-conserved element locus uce-3028"
BASE COUNT          193 a           95 c           97 g          183 t
ORIGIN      
        1 atgttatatt tgattactgg gatatcaata caatgaaagt ggaggaattt caacagtaat
       61 ttttttttta gtacatcatt tgtgcagggc tttataaaag atttttgttt ccaaagatgt
      121 tattggggtc cacatattct ttaacagatc tcagcattcc caagccaaca tcagagatgc
      181 tctccttcat ccagcgcttc cgcaatttgc ctactggaaa aacaaaaaca aagtgtttca
      241 atatatggca ggattctagg agccaatcaa tcttgtgacc atgaatgaat aaacactgtg
      301 tgataaatgc ttttattcaa aaatgagaaa tgttttgctt tatttgattt attgagccca
      361 ccagactatc aagctcatta agctcagcat actcccagag gaagactgtg ttccacactg
      421 tctactttct ttagaaacta tgaaatttag atgaagctta ggctgaagac aaggaattta
      481 aaaagccaca aactaatttt aaaaagcaga agattacttt aattaaacca gtattggttt
      541 aaatagctgt ttatatgaag aaggctta
//
LOCUS       KCLJ01002719             324 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 303498cal ultra-conserved element locus
            uce-1552, sequence.
ACCESSION   KCLJ01002719
VERSION     KCLJ01002719.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 324)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 324)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..324
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="303498cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>324
                     /note="ultra-conserved element locus uce-1552"
BASE COUNT          100 a           64 c           66 g           94 t
ORIGIN      
        1 atccttgatg gctgatgccc ttcagtgcca aatcagcatg atttatcgta gccatctatt
       61 cagcacaaca gaggctggag gtgagctgca tggtgtacct cacacaatat gcataactag
      121 agctctgaac tttgaaggaa agcctcagag ctatttgcaa agtgctggtg cttagtgaat
      181 actaaattac atttaggaaa tagtctactg ctaccagtta tacttcattt ttattcttga
      241 cacagacacc taaatcagag aacagtaaca tttcagagat tatggtagca gtttgggtat
      301 gttccaacac tataatagga tcag
//
LOCUS       KCLJ01002720             424 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 303599cal ultra-conserved element locus
            uce-4921, sequence.
ACCESSION   KCLJ01002720
VERSION     KCLJ01002720.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 424)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 424)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..424
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="303599cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>424
                     /note="ultra-conserved element locus uce-4921"
BASE COUNT          155 a           85 c           63 g          121 t
ORIGIN      
        1 ttcaagtctg aaaaaagcac agagaatgtt gtaaatgtaa tactttactt ttctgtatct
       61 attttatcag tctgataaat tatctacaaa tgcataaaac ttaagcaaca tgtccaatgc
      121 actcagaatg gtcccaaact caattactta aagatttact gtacagtaaa caaatgggtg
      181 aaaaactgta atttattgaa actcataact caaaaaatat aagatgctgt agtgtacaat
      241 atgttacaca aagcaccctg gggtgcacat tcaagtcaag taataactcc atcgcccccc
      301 aaaccctggt atttccatat acaatcatgc acatttactc ttcaagagga agcccccgat
      361 gtgttaaata gcaccaaaat cagcattgtt cattgaaggg gagctaaatt aacttggcca
      421 ttac
//
LOCUS       KCLJ01002721             637 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 303700cal ultra-conserved element locus
            uce-4124, sequence.
ACCESSION   KCLJ01002721
VERSION     KCLJ01002721.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 637)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 637)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..637
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="303700cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>637
                     /note="ultra-conserved element locus uce-4124"
BASE COUNT          213 a           98 c          123 g          203 t
ORIGIN      
        1 agataagctt cttaaaacct tccttaaatg ctggcacctc gagattgtaa ctatttatgt
       61 tttaccacta aaatgtgttg catgtttttg gttggagttt taaggatcag attgatgaag
      121 gagagttcag agccagacgt acagcataag agacaaaggt ttagtaatga gttcaaaatt
      181 tacaaaacac agaagcaaat atggctttaa tacatgatgt gaccctttat aaggcttgaa
      241 attactcttc aaaaatcatt ctggcttgac ttcagagccg agtggattgt gggataccac
      301 agattgactt tgagtagtgg gttggtattg caggaatttt ttaatttcct gtaactcaca
      361 acaattttct tccagttaga ccttatcctg ctgcagagta tttactgaac aatttagtac
      421 agtgtataag ccagatcaga ggcacatgca tgcactcata cgcttacaca cacacagaaa
      481 aattaaagta ttaatagtca aattcaaaat gatcaaaaga aaaaggttca gtgtggtgat
      541 gtttacattt taatgtgcat tttatattta atatctaact agtgatggag gaagaaactt
      601 tgggctattt ttaagaaaat aattgctcaa gctgcat
//
LOCUS       KCLJ01002722             638 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 303809cal ultra-conserved element locus
            uce-1708, sequence.
ACCESSION   KCLJ01002722
VERSION     KCLJ01002722.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 638)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 638)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..638
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="303809cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>638
                     /note="ultra-conserved element locus uce-1708"
BASE COUNT          195 a          135 c           98 g          210 t
ORIGIN      
        1 gatgaacaac cacattactg aggagtattt ttagtggcaa caaaatcata accatcaaaa
       61 gaatgttcac tgcttgcagt tttctatttc atttcttctc ccaatcatgt ctcaacaatt
      121 tcttgaacca agcagaaaaa tgatcagaaa agctgcgtat ctctctactc atggaataat
      181 aagcttcctt tatgcaattt gttagaggtt cattctagaa cgaccttttt cttatattat
      241 ccctttaaat catcactctt tacagctgaa tacacatgaa atgctctgga gttgtactaa
      301 ggttaagcat taaagttgca tgtcaaaaat cgtattagtc aaaatcatta ttataagcca
      361 ttctacactc aaagaacctt gaaaaaatta aggttatgca gagagtttgt gagccaactc
      421 tttaatcaca cactgaactt cagatatata gtttagtaca attagtagca ctgggctaat
      481 ggttatgggt taaatgctac ttacaagcac ttttgtttgt ttaatttagt ccagactctt
      541 gctttcattc tcccccggct ccccccctcg tctttgctct ccccctgtgc accactggct
      601 atagcaacac caattggtaa aaatgagact gtgatgtt
//
LOCUS       KCLJ01002723             625 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 303920cal ultra-conserved element locus
            uce-1736, sequence.
ACCESSION   KCLJ01002723
VERSION     KCLJ01002723.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 625)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 625)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..625
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="303920cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>625
                     /note="ultra-conserved element locus uce-1736"
BASE COUNT          186 a          117 c          163 g          159 t
ORIGIN      
        1 tggctgcagc tgaaaagctt ctgggaaaaa aagccattgc aaacggcccc aagaaacaac
       61 gaagcacaat actgccttgt tttcccttaa aggtagaagc cctcagctcc aggtggacag
      121 tgttggtttc atgggttggg aagaatcttt cccagcaaag attttggtga gcagtgggta
      181 gagcatgccg tgggagacta ctgcgggctg atatgagaga tgatatcaga gattagttaa
      241 ccgtatgggc tgagtccctg gggaggtgtg tgaaatgaat cagattaaac aaaattgata
      301 atgtgaatac ttaatcaaac agacaaaggt agtctgcaca gctaattagg ggcaaataga
      361 gcgtccctct tgtacctcat ttaactgaca aattgtgcag acagttttaa tgggagtctg
      421 tttagcaaag agaaggctgt acagttgaca gcttggcaaa atgtggtttc tgtaacacca
      481 catgatgctt acggaaatta gcctggtgca gctgagctca gagtaggtaa gagcagccca
      541 aactccagta aaatggtaaa atagaccttt tgtcctctgt tcctgacttc ttaaagggac
      601 ctggatgctt ttctgcaagg tggca
//
LOCUS       KCLJ01002724             596 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 304031cal ultra-conserved element locus
            uce-2835, sequence.
ACCESSION   KCLJ01002724
VERSION     KCLJ01002724.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 596)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 596)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..596
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="304031cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>596
                     /note="ultra-conserved element locus uce-2835"
BASE COUNT          204 a          122 c          106 g          164 t
ORIGIN      
        1 taaacagaaa aagttaagag gatctcttgc aaggatggaa tccctagttt caaatacggc
       61 cagactcctc cctccacagg tgaagtcagc aaattggtgg agacattaca gagactgact
      121 ttcagggggg gaaaaactaa ttctgagcac cattacccct cacctctgaa ccaagaaaga
      181 ctttacgtgg tgtcataatt tagcaaatta cttcctcaaa ggaaggtcaa acattttacc
      241 attcgatcaa taggaagcaa cttacaaatc atgtgtattg atcattgtaa tcattcagag
      301 gaatgtaggg cagacactaa aatcacatgc acttagtctt aattgcccac attaaagcaa
      361 ttatgtccca aaactgtcat tgtctaatgc tatgcacact acccagcatg gtaactttta
      421 gccatacata tttaatcata aatcagcctc ttaggtctat tgcactaaag acttacaata
      481 ttgctgtaat tatgcaaata taactacgtc tcaatgtgta agatcatgtg gctttgggga
      541 gccaagtgga ggaaaataaa cccctatatt aatgcagctg gcatttaata catata
//
LOCUS       KCLJ01002725             490 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 304142cal ultra-conserved element locus
            uce-1295, sequence.
ACCESSION   KCLJ01002725
VERSION     KCLJ01002725.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 490)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 490)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..490
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="304142cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>490
                     /note="ultra-conserved element locus uce-1295"
BASE COUNT          166 a           68 c           83 g          173 t
ORIGIN      
        1 atagtcctac aaggaattcc cagtaaagca gcgttgcagt tctacagtat attaatacca
       61 ttggaaagtg ttatccaatg ggcagatgtt aacttaaagt gcacattgtt tggaaaagga
      121 gttaattaac aagttattaa ttggatagaa agtctgaaac tgttgtactt ctagcaaata
      181 cataattttc ttcaagtatt attaaagcgt ttttgttgta cctattaaag attcttgtct
      241 ctaagttaat ttcattatgc taataagcta tcatcgttac agaacctaag ctttgatcca
      301 tgttaattgt cgtgatcttc aaagacaaag tcaccactta ctttaaatga attttacatc
      361 tttttaaaga atcacacgga aattagggga agtaattaat tttttattat gtgtctcaat
      421 atttttaagg gaggaagtca atggtattgg ctagaattca ttttaacatt taactaggga
      481 aaacagcatg
//
LOCUS       KCLJ01002726             603 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 304250cal ultra-conserved element locus
            uce-7582, sequence.
ACCESSION   KCLJ01002726
VERSION     KCLJ01002726.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 603)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 603)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..603
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="304250cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>603
                     /note="ultra-conserved element locus uce-7582"
BASE COUNT          208 a          121 c          103 g          171 t
ORIGIN      
        1 atacttaaga ttcaatagga atatctttat ttaggcagta tatttaagga gaattttaag
       61 aagtgataaa atcagtgaag tctaaaactg cagagagagc atctgagact gagcacgata
      121 ttatcagtgt cagcatactg atgacccaga tggtatttgt atgtttgaag tatgacatct
      181 atactcctct gtcatccaac acaagtaatt aacaataatc aagtgggtgt taattggata
      241 taatggaaca atctccagtc agcctgagcc tactatttgc ctcttactag taattatgaa
      301 cactaagtac tcacgctaat ctccttcttc tcactgaagc caaacagagg tgcagtattt
      361 actcagctga tagcttgttt tgtctgcaat ttaatctgtt ttaagccgag aaactcataa
      421 tttgcagagc cgtcaccagc tgccaggatc acacaaaaga attcaaggcc ctagatgaca
      481 gcaattcagt atatgcaatc cagaggaaaa aagaacaatc attaattaaa ctgacctgtt
      541 acaaccacag tcactgaaaa ttacccattt gtgtaacatc tgataaacca caactctgac
      601 cca
//
LOCUS       KCLJ01002727             576 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 304357cal ultra-conserved element locus
            uce-5696, sequence.
ACCESSION   KCLJ01002727
VERSION     KCLJ01002727.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 576)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 576)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..576
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="304357cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>576
                     /note="ultra-conserved element locus uce-5696"
BASE COUNT          211 a           89 c           98 g          178 t
ORIGIN      
        1 ctcattaacg ccactctttc ttagaatctt ttaaatatgt atttttcatt aaaattctaa
       61 ttcttgataa actgaaagca agatctggtg acaaagaggt tataattaat ctagcaagag
      121 cagtcaaaga aatccatgta attgaaagcg aatgtatgaa tgaggagact aatgctacag
      181 aacttccaaa gccttttctg tggaattaat actacagaga cccataaaag attaatcaag
      241 ataagcaatc gataacttct caagtgctaa taagcactgc catgttccat gatatgttga
      301 gcagtttatc atgtttaacc atatgaagat ttatagaaaa tccattgtta aaaccaaagg
      361 atgaggtaat gcaccactta gtaaatgaag tgcaattaaa atttatgctt gatattacac
      421 attcaaaaga tctgtaaaaa tcattttgat ttcctctttt taaaggaaca aaattaaggt
      481 actggttgta cctttcagtc agtagtcctg ggagaacagt gaagacagca atggcattct
      541 tcaagttaat atctgctttc aagtgaaagg tgatga
//
LOCUS       KCLJ01002728             529 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 304462cal ultra-conserved element locus
            uce-4330, sequence.
ACCESSION   KCLJ01002728
VERSION     KCLJ01002728.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 529)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 529)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..529
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="304462cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>529
                     /note="ultra-conserved element locus uce-4330"
BASE COUNT          179 a          113 c          108 g          129 t
ORIGIN      
        1 gacattcctg caggtcaaaa ttaaaataaa aggcagagac tcagtgtgca cctctggtta
       61 gactgctggc ttgctcaatg cagaggctgc ctgcagttaa tcagccttct ttctccacta
      121 actgtcactg caaacaaagg aattagcaga aggtctgtag ggagcattga gataatttgg
      181 ctggctgaag aaaagaaaag aaaagcaaaa cgaaattact gaaatttact tgcactgacc
      241 tctccataaa tatttagata taatcatcat tacctcggag taaattaagt tataaacagt
      301 ctccacaatt gcacatgatg aatgcgtatc ggcatcagag agcactttat tgcaagttaa
      361 tgtggaaaca gagcacctca atcaatcagg atgcagaaga gctgtctgat catatcagcc
      421 catctcaacc tattcataca ggacaccgca ccacccacac atgtcctatt aacaaataca
      481 tatgagcccc agaagatggg aggatgtatg tctgtggagc tgggataac
//
LOCUS       KCLJ01002729             739 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 304575cal ultra-conserved element locus
            uce-5565, sequence.
ACCESSION   KCLJ01002729
VERSION     KCLJ01002729.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 739)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 739)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..739
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="304575cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>739
                     /note="ultra-conserved element locus uce-5565"
BASE COUNT          212 a          130 c          145 g          252 t
ORIGIN      
        1 aaatgttcct atgtcttcat agaaaaaggg gagagaaggg gcaaacagac ttactaagaa
       61 atgtttgatt gatatgtaaa gtaatctgtt cctgaagaaa gctattcctg aaggaaccgc
      121 accgcataca taaatcccgt tacttctctg tctccagata tgtttgtcat tgtgcttgtg
      181 gtacacatag gtagattaat agatacatac ataggatcct acgcacttgc tgctttaagc
      241 tattccatgt tcaaacagat gttgaagcca agattatttt tgcatgtgct agtagtgtgc
      301 aaacctttaa aaggcatcta tgaattatta ctttggttca gcatgagtgc agaaagaaga
      361 aatgtacctc atctgtaata cactgtgtag actaatatca gcttcttttt ttcttatatt
      421 gcagtgagat attgatctgg taaaatggta ccatattgga gctgtctgtt gtggtattca
      481 tcatgctgtc acatccctag tgccttggag ttattgaaaa gcggaattga gggagttctg
      541 tcattgtgtg ttgcaatcca ttcataagaa agttcactaa aacatctgaa gtagtgttct
      601 tgcttattta tttatttaca tctagtgaga accatttcac ttctgaggta cagaaccctt
      661 ctatttcagg cacagggaca ttgacagagt ttgttacctc tcctccgacg tctttctttt
      721 gtataacatt tgatcttta
//
LOCUS       KCLJ01002730             406 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 304684cal ultra-conserved element locus
            uce-3170, sequence.
ACCESSION   KCLJ01002730
VERSION     KCLJ01002730.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 406)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 406)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..406
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="304684cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>406
                     /note="ultra-conserved element locus uce-3170"
BASE COUNT          138 a           63 c           72 g          133 t
ORIGIN      
        1 atatatatat acgtatatat attttaatac ttgtggacaa aatgatgtta caagttgttt
       61 gaaaacaaca aaatcaccaa tgtcttccat tttgagatgt gtatagttcc ataagcatta
      121 gtgctttgta gcaaactgta gtgccatgtt aggaccagtg catgagccta gtagtatttt
      181 tacaatttct gagtgacaaa tttattagta aacagtgatg ataatgtaat taacactaga
      241 aaggatacaa taggaatgtc acaaacgtgg tctaaacatg cagtatcctc cctttgacaa
      301 tggcaatgct atccttagaa atggaactca aatgggcttc atagaatcat agttgacttt
      361 ttgtgtccaa ctacagtagt aagcttatgc aagtatccat acttgt
//
LOCUS       KCLJ01002731             793 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 304778cal ultra-conserved element locus
            uce-3743, sequence.
ACCESSION   KCLJ01002731
VERSION     KCLJ01002731.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 793)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 793)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..793
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="304778cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>793
                     /note="ultra-conserved element locus uce-3743"
BASE COUNT          230 a          206 c          199 g          158 t
ORIGIN      
        1 agggctcttg gagaacagaa gaacctgctt taaagacatg acacagagcc acaacgacaa
       61 gagagagaga agtagaaaga gacatactgg agaagctgac cattgcgaaa tgctgacacc
      121 ggtctcctgt gaattcgatc ggacacctac cggaagagag aaaaccagaa agagagaaac
      181 aagatagcaa aatgacaccc tgaggcccct tctgatccct tccacggctc ctctctgtct
      241 gcttgcagcc ttcaccctta cctgcagccc taagccctac ccaaagctga caccaagagc
      301 catccctgac tagagcacgc tacatccacc gctgtgcccg ggagggttta agtagtgtgg
      361 tgcagtcttc aaacatactt tgcttaggat ctggcatgta caatcgcaaa ggcagtttct
      421 ccaaacatct ctgtccgaag aatccatttg gacatctgga ggggaaaagg ggagaaatca
      481 cagaacatgt ctggcacagt tcttgaggct aaggtcagaa ataaaaagtg cattgtgatg
      541 aatggaaaaa ataaaggttt tacatgcgac caggcacctg caacatcagt gctccagctc
      601 tggttaggcc tgggtcttca agcaggcagc caaacccctc ctgctctgtc ctgctctgcc
      661 tgcctccttc cttctcacct gctagaagca ccagctggca ggaagatgag atgggctgga
      721 tgctactgtg gagctgctct gtaagctggc aagaggcacc aaaagcagag agcagctgct
      781 gaggcgacag cga
//
LOCUS       KCLJ01002732             337 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 304888cal ultra-conserved element locus
            uce-7240, sequence.
ACCESSION   KCLJ01002732
VERSION     KCLJ01002732.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 337)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 337)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..337
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="304888cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>337
                     /note="ultra-conserved element locus uce-7240"
BASE COUNT          118 a           54 c           65 g          100 t
ORIGIN      
        1 cactgatatc aaccatttta atgaaagaat acccaatatt ttcatggaac tataaaaggg
       61 agcaagacta agtgttatgg caaaaagcct gggctcagca gctttgtgtg ggaaatagtg
      121 aaatgtgact gtgatttata atgagaaaag gtatctacaa catacaattt tctacctagc
      181 tgcaaataat aattcatagt gatgtccctt ccagataaaa tacctttgca atgtaggact
      241 catgtggtaa aatgatcatg ataaatgtca gaccagtgca ggtaacggct ttacaaacca
      301 ttaagattag ctggctcttt ttttttgatg ataacag
//
LOCUS       KCLJ01002733             479 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 304990cal ultra-conserved element locus
            uce-3600, sequence.
ACCESSION   KCLJ01002733
VERSION     KCLJ01002733.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 479)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 479)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..479
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="304990cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>479
                     /note="ultra-conserved element locus uce-3600"
BASE COUNT          102 a          113 c          110 g          154 t
ORIGIN      
        1 taattccttg tttgtccttt aataaaagac ccgtgagctc cccttgacac cggagctgga
       61 atcgctggga cctggggcgt cctgtgtgcc agctctttgt ggcaatctgg ttccacatcc
      121 atcctgccaa cccgctcctc tgggggttac atgtttgaaa acatgagcag cagctcatct
      181 cccattcact gtttttctcc atcatttgct ttattaaata ttgattttct gttgcattat
      241 taaaccttaa gtcctgagca taaattcaga gttgatactt taatctggct cttctttttg
      301 gcctttaaaa ctgatttttc tggccagtct ctctggaggc gagtccagaa gcaaaaacct
      361 gttgcagagg cttggggagt cagaggatga agcaaagggc tcttcccaag ggatttttgt
      421 ctgtttggtg tagtctttgc catgaaggtg gcatccatgg ggatcctggc ctgcaatcc
//
LOCUS       KCLJ01002734             527 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 305089cal ultra-conserved element locus
            uce-5781, sequence.
ACCESSION   KCLJ01002734
VERSION     KCLJ01002734.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 527)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 527)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..527
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="305089cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>527
                     /note="ultra-conserved element locus uce-5781"
BASE COUNT          134 a          126 c          121 g          146 t
ORIGIN      
        1 gttctttgtg tatgaattta tcagaaccat tgtgggtgtt acgttcataa ttcatcccca
       61 aagcaggttt gtaaataata tttcaaacat actaactagg cagctctagc acgcattcct
      121 ttttatagct ctcacaaaat agcttcttaa aacagtgaca ggctgttgtg agaaagaaag
      181 gggggaaatg taggtcaggt ctgtcacaca tgggctacca ttacatgaag tgataggctg
      241 tctttctgct ctggcctcgg gataggagtc cctcagcctt ccattagaac cttcaataaa
      301 tgtatatcca ccctccatgt taatgggggg agtcaataat agtggcttgc ccgtggggaa
      361 aacactcggt ggcactctgc agtgacacac tggggccagc attgacgtgg agccaccacg
      421 cggaatgtgc tgataaaagg ccactgtctg tgcagcttgt tattgaattc ctgctttgtg
      481 ccctggcaca ccatcagccc ctggccctct ttttaactcc ccacgca
//
LOCUS       KCLJ01002735             844 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 305193cal ultra-conserved element locus
            uce-1210, sequence.
ACCESSION   KCLJ01002735
VERSION     KCLJ01002735.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 844)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 844)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..844
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="305193cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>844
                     /note="ultra-conserved element locus uce-1210"
BASE COUNT          267 a          155 c          159 g          263 t
ORIGIN      
        1 aggaattaaa taatagtgtt gttgactaca acagaattca gcatatgcta tggcacctcc
       61 cctgaagtct tggcacacac aatcactgat gaattctaaa tttttgaaca cttttatttc
      121 caaatgtagg tcccctcttt tcctccccct gcaaatcccc aaatctaaag ctattttaaa
      181 caattactaa atccaaggat ttcaataaaa tgtaatgttc acagaaaaat ctcataaatg
      241 tcaaaattgc tgtgggcaga atagaggaga atatagtatt ttcttgatct gctgtagcaa
      301 tttatagatt tcaggacgtg gtttataaga atgctaaatg ttctggaatt acagctgtta
      361 ctgatcagtg attgagccag atttgtgtta ttgcaccatg ttcatgcttg tacctagaga
      421 gcagtaaagc ctcaatataa taaaaagcac ctgcatttta aatgaaattt caattgaaaa
      481 acttaacagc ccttcaaatt gcagaattta acgcagccca gtaaagctta aataacactt
      541 tgcctccaca ggctgagggt tttgcattca aggtgacttg attgtgtcgc atggtgaaat
      601 tatttacaat taaggaattt ctctggaggg ctgcagagta tttgctgttc cacaacacct
      661 atgcaggcat atggtcggtc tttttcagta ttcatggaag ctcctgaacc tttatgataa
      721 ttgaatcagt tagagtgctg agtggagcaa gcataaaacc tgttaaccta aaggtcagat
      781 ctgtgcattg tttatttatc agtaggtgaa agagctaaat cggcagcttc tgtcacagtc
      841 gaag
//
LOCUS       KCLJ01002736             491 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 305303cal ultra-conserved element locus
            uce-3654, sequence.
ACCESSION   KCLJ01002736
VERSION     KCLJ01002736.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 491)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 491)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..491
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="305303cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>491
                     /note="ultra-conserved element locus uce-3654"
BASE COUNT          132 a          110 c          102 g          147 t
ORIGIN      
        1 cctttctgca ggcagcagat gcactctgct tgctggaaag acagaaagaa atagcctgta
       61 gctgacatgt tccccaagaa aactctgtag ctgcaagccc aacccagaca gcaccagctg
      121 cccttcccat cgagcagttt ccatggggta ttcaaggggt taatggagcc tatagtggag
      181 tgtttgcttt cttctgtttg aaatcaaaca tctgatcttt atctgaggtg acaggtttaa
      241 tgtcttcctt ctctgacaaa tttttacccg aagaggaatg caaacacata tatttctgtg
      301 gttttataag tgctcatctc agcaagccaa tattggaaga ttcgtcccct aataaacagc
      361 aaagccatga gcttgtgctg cttgctttta tatcccttac atcatttaaa agattttact
      421 tcaggggtca ggtactttga cagagcttta ggcaaggtga agtatcactg ttcagcaatg
      481 ctgacttcct t
//
LOCUS       KCLJ01002737             604 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 305518cal ultra-conserved element locus
            uce-6565, sequence.
ACCESSION   KCLJ01002737
VERSION     KCLJ01002737.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 604)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 604)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..604
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="305518cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>604
                     /note="ultra-conserved element locus uce-6565"
BASE COUNT          190 a          119 c           96 g          199 t
ORIGIN      
        1 acttctctaa aacaaacata tagatcattt ttaatttcca agactcatta ctgcaaatat
       61 ataattacag tatccataca tccaacatca aatattattt aatactagag tagctgtaaa
      121 gcacttatct atcaaggtcg cacaagctca gataaatcag gtgttaagca ggcatatctc
      181 caaggaatct gataattctc tcatctgcaa tcctcagcat atcttattat ttaccgccaa
      241 agacatgact gattaatttt gtcatctttg ctctgtgatt tttgctcagc tgaagctggc
      301 tgccctcttc tgcaatgcct gatcagactt atttaagttg atgcctttga tcgcagacac
      361 tgaggagctt gctgacttag gctttgacta aacattcctc cactgcaata tttatgcaca
      421 gaatcctaaa tgataatgga cagtcattga aaaacttgta agatgtttcc actatttttc
      481 tgatgctcaa gacaggaggt atcagtcaag atgcaacaaa ttttcctttg atgcgaagta
      541 tctgaggtca ggaaataaaa tctgttattg gaaaactatg tagtctgaat gctttaaatt
      601 cttt
//
LOCUS       KCLJ01002738             540 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 305626cal ultra-conserved element locus
            uce-6135, sequence.
ACCESSION   KCLJ01002738
VERSION     KCLJ01002738.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 540)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 540)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..540
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="305626cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>540
                     /note="ultra-conserved element locus uce-6135"
BASE COUNT          171 a          110 c          106 g          153 t
ORIGIN      
        1 atacagcttc ttgctaaact gaagaaatct ttgtaatctt gcatgtaatg cctctgcttt
       61 ttcacctcac aattgggcaa gctattaatt tctggagtaa aagggatatt acagatgctt
      121 ggcagagaga catcttggca gcaggccgaa tacttgccaa aaaagtgtca aaatgtggat
      181 gtgtctccaa taatttaaaa aatagaaggt gataagttga aaatgtcagg taattggcag
      241 acagatagaa agttaaactg tgtcctcagt gaagaaaatt aaccagcagc tgccagcaga
      301 ggccccaagg tcatctgaat gtcagaacca agtaagggcc aatcattcag aaggggttcg
      361 ctgctgatat ttgccctccc tggtcatttt cagatctccc aggaactgcc ctgaactact
      421 gccaacatgt gttcatttct aaaaattaca tagattgtga tttattaccc atcacgctac
      481 aaaaatccat tgtgaattaa atcagccctt tgtttaaatt gctcctctgc aatacgtatc
//
LOCUS       KCLJ01002739             519 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 305732cal ultra-conserved element locus
            uce-667, sequence.
ACCESSION   KCLJ01002739
VERSION     KCLJ01002739.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 519)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 519)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..519
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="305732cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>519
                     /note="ultra-conserved element locus uce-667"
BASE COUNT          177 a           87 c           91 g          164 t
ORIGIN      
        1 tgagagcaaa agagcagctg agctatttta aggtctcttc ttccagcagt ttcacatctt
       61 aaagaaaaat aagaataaca ccaaactgct ctgttttcat tgcattatgc agatgaaatg
      121 acaagttgtc atttaagaag ttaataaaca gtcaccattt tgcaggttat ccaaatgcta
      181 ctgaatagaa aaccttggat ccctaaatga tgtgtaatta aaattattta aaaaatcctc
      241 cttgacaggc cagggcttag ccaaaatgta aatgacatta aagaagacaa tgaatttaat
      301 tttatttaat gtcccttttt gcagatcctc atttacatag catttttaac aaaagcgttg
      361 accttataaa tgctggcatt tgtacagctt ctgcagagtt ggatttaatc atgctttcgc
      421 aaagccataa gggaaaaagc tttaagttct ctggttggat atggagtagg aataaaaaca
      481 ttgggactgg tcaaatgttt atcctccttg cttctgaaa
//
LOCUS       KCLJ01002740             464 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 305836cal ultra-conserved element locus
            uce-3650, sequence.
ACCESSION   KCLJ01002740
VERSION     KCLJ01002740.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 464)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 464)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..464
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="305836cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>464
                     /note="ultra-conserved element locus uce-3650"
BASE COUNT          129 a           90 c           98 g          147 t
ORIGIN      
        1 cacgaaaaga aacttgcaca aaagaggtgt ttcaagcaga ataaattata gtgtgatgtt
       61 attaaaacac ttagttgtta agttgccaag aaaatccagt atattcacac ggactcgagg
      121 acctgtctcc atgcaaagta attaaattag atttatgggc tgcattacat cagtgtttga
      181 tagttcattt ttcctttctt catattttgt cctgctttat tagagcatgt gacagatggt
      241 aaaaatagtg tgaagtttct tggccctgtg ctaaatcccc cttcggtagt atatctctct
      301 tctgtcagtt ctccccagtg atgataaatt aacctctcct cttctatccc aagtgtggca
      361 gtaaagcact ctttgacaca gcactatcac tttatcttaa tctgtgctgt tccaggggcg
      421 gggtggggaa ggaagcgagg ggagatgatg caataccacg ggtt
//
LOCUS       KCLJ01002741             445 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 305935cal ultra-conserved element locus
            uce-3163, sequence.
ACCESSION   KCLJ01002741
VERSION     KCLJ01002741.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 445)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 445)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..445
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="305935cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>445
                     /note="ultra-conserved element locus uce-3163"
BASE COUNT          179 a           87 c           75 g          104 t
ORIGIN      
        1 ttcccctctc ctcccatttt aactgcaatc ccaggctgtt aaaatgtcaa ctaccgagct
       61 gaaccagctt ccaagagtta attggaaaca aatgttatca gagatgcatg aaactacaaa
      121 ctactgctga agagacaaca acagtgagat gcactaaaga cttgaaatca aaagggaaca
      181 actcaaaatg atacacaaaa caagtacaga aaccaccatc tggtccttcc aaaccagagc
      241 tgccatgaag acaatgtata gttacctgca tccatatctg caaagaaggg aacagccagt
      301 aagggaaaga aggaaccaga aattcagtgt ctcagagttg gaaaaagttc ataaggagaa
      361 cagataaaaa taatcaaaaa agtatttttt ttgatttcta aactgggaat tttctatgcc
      421 ataaaaacaa aatatttaat atatt
//
LOCUS       KCLJ01002742             608 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 306045cal ultra-conserved element locus
            uce-4446, sequence.
ACCESSION   KCLJ01002742
VERSION     KCLJ01002742.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 608)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 608)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..608
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="306045cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>608
                     /note="ultra-conserved element locus uce-4446"
BASE COUNT          180 a          101 c           95 g          232 t
ORIGIN      
        1 catctaggcg gtaatcattc tattatgctg aactgcatgt tgaaattaca caatccattt
       61 aattttcaaa atttttggca ataagtgaaa tctcagcatg taattttctc aagtgatctt
      121 tcaaaaacca aatcattttt atacgctagg gttttaattg catggcaaag taaggctagt
      181 ttgtgcatga gcaagttgaa atgctaacca aagaaacatg aaaaacgcac atttctctgc
      241 tttattggat gtgacagagt cacgcttttc attcaccatt gcttctcttt ttccactgtc
      301 tgtgatttgc ttgccaggag gagctactat tcttactcct actatctgta agtagaatac
      361 gggtgactta ctattttatg tgttttaaag atgcagtatc cctttttaaa aaagaaaagt
      421 tttattgata gttacctttc tttgttctca ggcttgaaaa ttgtatcatt gttcctgtta
      481 ttcttttttt taaagggata ttgtatttct aactgtatat tgagacttag ttccatgact
      541 atcattttaa tttattataa tcataattta atttgcatta tgagtcacag caacacatca
      601 cactaagg
//
LOCUS       KCLJ01002743             582 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 306152cal ultra-conserved element locus
            uce-7474, sequence.
ACCESSION   KCLJ01002743
VERSION     KCLJ01002743.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 582)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 582)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..582
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="306152cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>582
                     /note="ultra-conserved element locus uce-7474"
BASE COUNT          161 a          146 c          102 g          173 t
ORIGIN      
        1 ctcaggccac ccccctcatt ccttccaaaa actacagttt gacatttttg caatgattca
       61 actccattct taggcttgtc cttttcatcc agaacaacag aacagatcat caccttttgt
      121 cctgtgccct tcctttttaa gagtggcctt gcagtcacaa agtgattcaa accccacatg
      181 tacactgatg tgaactcact tgcttgccaa ctcccctccc ggtgggaggt ttgggatgct
      241 ctcagttgct aacgtacgca tcacgtggac taagtctggc actccttcac cctgcttctt
      301 tatgatctct gggaatcaga agtacttttt ttgtaagtgc agtccaaatt gaaacactca
      361 aaaaggcagc ttaacaaagc gacagaccgt actcaacatg gtaattgtta actttggttc
      421 cataaggaaa aatctgtaac agatttgaca cagatttact gttcacatgc tgacatggtt
      481 ttagaaatac acagctacct agtaacatct ttaatggctt tcctgctaac agaagatgta
      541 atatcttccc agagcctggg gcagatatta acatcagctt ta
//
LOCUS       KCLJ01002744             669 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 306261cal ultra-conserved element locus
            uce-3392, sequence.
ACCESSION   KCLJ01002744
VERSION     KCLJ01002744.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 669)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 669)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..669
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="306261cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>669
                     /note="ultra-conserved element locus uce-3392"
BASE COUNT          234 a          138 c          105 g          192 t
ORIGIN      
        1 tctttaaata ataatcaact gttacaaatg caattgattg caaatttgga agcagccact
       61 gaaagtagca aaaatttcag aagtatatta ataattgtca tctgcaaaaa aataagctcg
      121 taacattaaa aattcagttc aacccctctc tttccttgga ccctggatcc taaaatgaca
      181 tactacaaga taaaatagta atgctaatat tgatagtttg tccattacag gtcagctaac
      241 tgtccactgg aacagttaca aagctgttag tttcgatttc acaaggccaa tcaataccga
      301 ggcatactgt ttcaattttg tctgcattga ttataacacc ccaaccttac agcattcatc
      361 tttctgaaag aaggaagatt tgatttactg aagaaaaatt ggagagagca tcacaaagat
      421 tttaccggca agcctgtgac acagggaaaa agatgaatgt ctctaaggta gagacgcctc
      481 ttgctcgagg gcatccatta gaacacgttc aaccaatctg aaacagagtt tcttaagcaa
      541 ccgaaaccca agcctaaact cactctccca aactaatcaa aagcattcag ggaggttctc
      601 ttaaaaattc ctaaacctta ttgcttctaa aataatttat gtctgcagtt ctacctatgc
      661 atttttctg
//
LOCUS       KCLJ01002745             392 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 306370cal ultra-conserved element locus
            uce-2954, sequence.
ACCESSION   KCLJ01002745
VERSION     KCLJ01002745.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 392)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 392)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..392
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="306370cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>392
                     /note="ultra-conserved element locus uce-2954"
BASE COUNT          146 a           75 c           52 g          119 t
ORIGIN      
        1 caaattagcc ctcaacataa cctttacatt acgcttttaa cacttaaaaa ttccagttaa
       61 aataattttc cattttacag aataaacaaa gaccataact gttttcactc tgcttctaaa
      121 atgcagttct agtgccccag ggacttcttt catctagtgc aaatgctggc atatgatgtg
      181 attgttaaca tagctggcca ccagatgaag taaattatct aaactgccaa gattcctact
      241 ttcattccaa tttaaacatc aatttaacac agaaactgaa gggtattatg aaagctttag
      301 tataaaccat ttcagatagg aaaaagaata aatggatttc tcaagccacc aaaacaaaca
      361 aatatgtaat tcattgaatc tgaagatgag tt
//
LOCUS       KCLJ01002746             703 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 306476cal ultra-conserved element locus
            uce-607, sequence.
ACCESSION   KCLJ01002746
VERSION     KCLJ01002746.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 703)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 703)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..703
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="306476cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>703
                     /note="ultra-conserved element locus uce-607"
BASE COUNT          206 a          122 c          150 g          225 t
ORIGIN      
        1 tttcagaaat aaaagcctgg agccagatgt ttgcaagctc tgtacttgtt tgtaatatgg
       61 aaacatgtaa aaacttcagc tccttgcatg tggaatctag atcaattttt aatttacttg
      121 tacgcatgga tgactcattt gaaaaagaaa attgtggcat caaaaaaaag acatttcagg
      181 ctgcataggt tgctgcattt atctgtttct cgtgcactct ggagtgaaaa taagtcacag
      241 tatcttaata atggtcttga ttttataaat tatttttccc cttgaaataa gcaatccatt
      301 cattttaata tgtagaattg gtttgctagc agggcgacag tttaaaaaga cttccaactg
      361 tgacacaagt gcaaccatat tgcttcctat tactcgctaa ggtagttgtt tagaagagag
      421 aatgttctcc ctggaaatgt ttaaagtgct gtaattttat ttaggataat gaggatttat
      481 aacagttttg ccatatgaaa acctgccttt agacagagtg aaataggcgg ttgtggttac
      541 ggagcgtgag acgtggggag gtggctgtgt ctgcccgggc agcgaatccg tcactgggcc
      601 cagaacattc cccgcagcca cgtgggataa ttcatcacca gcatgtatgg atttctctgc
      661 tttaatcgct ctagacgtta attaaaatcc tgttttatag aat
//
LOCUS       KCLJ01002747             525 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 306585cal ultra-conserved element locus
            uce-3042, sequence.
ACCESSION   KCLJ01002747
VERSION     KCLJ01002747.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 525)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 525)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..525
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="306585cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>525
                     /note="ultra-conserved element locus uce-3042"
BASE COUNT          201 a           76 c          106 g          142 t
ORIGIN      
        1 ttagcctcag aaaaatagtg aacaaaaata tgtattttgt atcctcatgc taccaattag
       61 agacgttatt taatgcaggt attttagctg ccagtctgta tataaaacag aacaaaatca
      121 tttttgatag ttatttaagg gcatcctaaa tacactcaag aatagtacat tttaattttc
      181 aataatgcca gcagactcaa gcattcagat tttagcataa ccagcaggaa aactgtttga
      241 tgttttaatt atgtcccaga aaatgctgaa tgtgttataa aagaaatctg aagaggggag
      301 ggggaaggtt tttattactg ctcaagagga aggacgtttt acaacatagc attaaaaatg
      361 taaaatggaa taaaaaagaa cttggatagt caaaactttg tctgcaacaa agtaggccag
      421 agaagcacaa taatatgtct gttagaagca gtcagcagtg agaagtgagg gagaacattt
      481 acatagacac ggggctgaag gaaaggaaaa gcctttaacc ccaaa
//
LOCUS       KCLJ01002748             787 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 306692cal ultra-conserved element locus
            uce-2378, sequence.
ACCESSION   KCLJ01002748
VERSION     KCLJ01002748.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 787)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 787)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..787
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="306692cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>787
                     /note="ultra-conserved element locus uce-2378"
BASE COUNT          225 a          196 c          161 g          205 t
ORIGIN      
        1 aagcacgagg gcgcagtaaa tcccgagtcc tgctattact actgtgctct gtgcgattac
       61 tccaccaagg tcaagctgaa cctggtacaa catgtccgct ccgtgaagca ccagcagacc
      121 gagggcctcc gcaagctcca gctgcaccag caagggctgg caccggagga ggacaacctc
      181 ggcgagatat tctttgtcaa agactgccca ccaaatgagc ttggtgagta gcactcccgg
      241 agccctcccc caaagactct ccaaacccag aacccgtccc ccagtgtaaa acacggcagc
      301 tcttaatctc tcagaaatga acatgttgtt cccattaaag ccttcttttt atatcagtac
      361 catacgcagt cctgcatgcg gtgacatctt tagcaggcat gcaggaggtt atgaaactct
      421 acctagggag gatctcacag tgaaattttt ccccccagag tgagctttaa tttcctttct
      481 catgaccaaa gcaatttggc tttcatttaa aagtttcttt gctgccagca gctaataagt
      541 gtaacaggac tgtaaaacat tctgagacaa aaaaagatta atagttttat ttgagagaga
      601 ccagtaattt aaaacataag acctagtcag ggtccattat acaataattc caatgttaat
      661 gctactttgc aaaatgagcg cttaacttgt ttttgctttg gttgacctgg cgcagggaaa
      721 cagctaacac gttttgaatg gcattccaaa actgaattaa tctctgttcc ctaaagtgtc
      781 ctgttta
//
LOCUS       KCLJ01002749             300 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 306799cal ultra-conserved element locus
            uce-7278, sequence.
ACCESSION   KCLJ01002749
VERSION     KCLJ01002749.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 300)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 300)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..300
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="306799cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>300
                     /note="ultra-conserved element locus uce-7278"
BASE COUNT          119 a           71 c           51 g           59 t
ORIGIN      
        1 ggcagactta ctggttatca ttgctccagt tacagaaccc agaaatccaa tgctgaccac
       61 aatgacagat atcagcctcc cctgcctatg cctctgcagc atcacaaaca ttaatactcc
      121 cacagcacca tggacaaaga gagaggagaa gagagcccag aggaaaaccc agtaccacat
      181 ctctgaaaga aagcagtcaa ataaagagtt aaagacaaga acttcataag taagaaactt
      241 taaaacattg caaacaatta ggagaaaatc atttccatct taaaagtaat gctcaagact
//
LOCUS       KCLJ01002750             608 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 306903cal ultra-conserved element locus
            uce-4651, sequence.
ACCESSION   KCLJ01002750
VERSION     KCLJ01002750.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 608)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 608)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..608
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="306903cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>608
                     /note="ultra-conserved element locus uce-4651"
BASE COUNT          150 a          129 c          157 g          172 t
ORIGIN      
        1 tcagtcttgg cctggggaag gtggtgcctt ggttgcactg ctgatgggca cagcagcatc
       61 acttattggg ggagtggtag cagctgctgg gaacacccgg gagggagcac cacaagtgtg
      121 atgagaacgt aaataaccag gggaaaaggg aaaggaaatg tgaagtggcc ctttaaatat
      181 gagcctccag agcccagagc ccaactagct ttccctcaag tattcaaatg agattgcagc
      241 atcagattgg tatgcattag gctggtctca atgaaaatta acatgtaatt gcttcaaatg
      301 aagtaagtga ggaggtaatc tgttcttaaa ttggattctc aggattttgt ggtaccataa
      361 tgcagctgtg aaatgaaata tattttaagg atgatgtcct caaggggaga gggaaggact
      421 gggaagggtc ctttccctca ctccttttgt ttctggtctc attagtgcta ttttataaat
      481 gaggagaggg ctttggtgcc actggagaag ctcccattgc tttggttcca tcgtgtttcc
      541 ttccttgaca tccctcctgc tcctcccttc cacctcctct ggttccccac ttctatgtca
      601 atgcctct
//
LOCUS       KCLJ01002751             475 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 307014cal ultra-conserved element locus
            uce-7109, sequence.
ACCESSION   KCLJ01002751
VERSION     KCLJ01002751.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 475)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 475)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..475
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="307014cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>475
                     /note="ultra-conserved element locus uce-7109"
BASE COUNT          143 a           93 c          107 g          132 t
ORIGIN      
        1 aaaaaaagaa aatgtacttc atgaaactat tgtatatgaa gcacttatta gccgtaatta
       61 aatggacaat atgaatttac tacgtcttta ggactctggc ttgttctggt ttagagcaag
      121 atgattaatg caaatacata ttacttgaga taaccattta gcagctaatt tagccaaatt
      181 tattacagca gttagaggtt tttcatttta gcagacggag acaaggacat gacaaaagcc
      241 ggcggtgact gtgaaggcac agtgccctct agtgcgcgaa gctttgcggg aatggtgagc
      301 aaggcaggga gggaaagggc tccggcagcg gccctgccga gacttttacg ggttttataa
      361 aacctttctg ctaccttcca ccgaaagctt tgccttccat tcccttctcc tgacacggaa
      421 gaatcagata cagaacaaat ccgtttcatt ggcaatattt tggctgaggt attac
//
LOCUS       KCLJ01002752             702 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 307119cal ultra-conserved element locus
            uce-7542, sequence.
ACCESSION   KCLJ01002752
VERSION     KCLJ01002752.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 702)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 702)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..702
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="307119cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>702
                     /note="ultra-conserved element locus uce-7542"
BASE COUNT          218 a          107 c          130 g          247 t
ORIGIN      
        1 tcctttcaaa aatcttcctt tgaagaattc taactatcat attgctaata gaaatgacaa
       61 aacaggtatg ggacttgctt atatttccaa tctccactgt agcacatgtt tcaattaaaa
      121 gtaaaattac cacattcttt agtttgtgta attttttgat agaatggtac atttatatgt
      181 taattttgct aagatcaact ttatttatct acaggaagct attccaagat tgttgtacgt
      241 tttcttcact tctgaaatgt tatcacattt aattgcctga tcttatttgg gttgcaatca
      301 tagtcattaa ttagcaggaa ggtgagggac agcatcatat ctaactatct gttatggctg
      361 ctttaatgag gaaaatacct gccatcattt taaaggcatc ctgtatactt cacaaataca
      421 gcttgctgta gcattctcat ttagactgtg aacatcaaag gaaattgatg tcaggtgtga
      481 acagaagctg ttgaatatat ctgttgagga agctgagtgg tgtgtctgga tgggagagat
      541 gaagggcagc ttaaaacatt aacaaaacta caggtaatta gtgtaaactt tcaagggtaa
      601 ggtatgcttg aggaataaaa atgttgttta tagctattcc ctgtagtgcc actatcgcta
      661 agggtctgtc aatgttttca tttataaagc tctattttta ta
//
LOCUS       KCLJ01002753             364 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 307231cal ultra-conserved element locus
            uce-2404, sequence.
ACCESSION   KCLJ01002753
VERSION     KCLJ01002753.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 364)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 364)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..364
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="307231cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>364
                     /note="ultra-conserved element locus uce-2404"
BASE COUNT           84 a           83 c          101 g           96 t
ORIGIN      
        1 tcccactaaa accagtgagg ggctctggga gcgtaatggg aagcggcgtg ggcgcactcg
       61 ggggagggct ctgggaccct tcaattgccg gttttattaa tgtccagaag cgtaaatcac
      121 agccccatat tttgtcattc cagtcatttt agtcactaaa ggattacttc aagtgactga
      181 actcggctgt tatctgtttg agttttgcag ccaggtcatc tcaggggact gggaacaagc
      241 tcgctgcccc cttaactgtg tcgagtggtt ggctccagcc cgaccacttt ttgtgattga
      301 tgcatgttct gcagcactgg ggctgctcct ggcagcgagg tgaggaaaat aagtaaataa
      361 ataa
//
LOCUS       KCLJ01002754             712 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 307340cal ultra-conserved element locus
            uce-1053, sequence.
ACCESSION   KCLJ01002754
VERSION     KCLJ01002754.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 712)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 712)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..712
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="307340cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>712
                     /note="ultra-conserved element locus uce-1053"
BASE COUNT          234 a          128 c          110 g          240 t
ORIGIN      
        1 aatactttat tatcaaagga ttttcttgtt tcagaaatac cttcactaga atggcttaat
       61 ataactcaaa gtgctttaga tgaaaacaaa tgtaagtaaa atttttctct gtttctttcc
      121 aggaggttgt ctggtgccta tattcccctt ctttcacatt agagctgtaa gtctcctctt
      181 tcaggtcacg tcttccacat aaaagtgcta aactaatgcc gcttaatgac aaattaatgt
      241 ccatgaataa aaaatacacc tctaatagca tagagtaatt tgccattaca atatcatcat
      301 tggacatgcc cctggtttaa tacgatgtat ttaattcata acttaatgag tgatatataa
      361 aaagagagag atgaaccctg caattacatt tatgtgagtc tgtcacctta tttgtaaaac
      421 cttagagtca tttacattca aattagaaca aatgagtgat ttcacaaagt gcagtgataa
      481 atgaccattg ctgcacaaga cagaactgta tttcctttga aaacattaac agtttcctat
      541 tatttgttaa aaattacaat gcatattgcc cagtgttgtg tgaataatga cttttttact
      601 gattaggtca gaagactaat acggagtaaa aataaataat ttttcttttc aaatttctct
      661 tctgaaactg ttatggactc acactgccac ctgctgccca ggcccgggta gg
//
LOCUS       KCLJ01002755             821 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 307451cal ultra-conserved element locus
            uce-422, sequence.
ACCESSION   KCLJ01002755
VERSION     KCLJ01002755.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 821)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 821)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..821
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="307451cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>821
                     /note="ultra-conserved element locus uce-422"
BASE COUNT          246 a          198 c          158 g          219 t
ORIGIN      
        1 aagctctggc atgcaccgct gaacaaaagg gaacaagtgg tctttactcg gagagcagct
       61 tcctattaag actcactccg tcgtacatta tgcctttcat ccccactcaa ccacaaaatg
      121 attttgctgt aggaaataca atggcagaaa aagatttaca ttgaaagaat ctttaataat
      181 aaactgttgc agatctgcct acttccccat gatttataat acaataaaca tcggattcta
      241 ttaagtctca tgcactgaag acatgcactg aaaacccgag tatgaaagcc ctcaattctt
      301 cccttctcca ggcccataat agtgaaacga gcatggataa atgtgctaag agtatctctt
      361 tgcatctttt atagcttgtg tgtatcaatc tgtaaagctt attaagaaag tcattgctat
      421 gcaaaacagc acccaatctc tttctcttgc ttttcaacag cgcgcagtgt ttagccaata
      481 gggccgggcc ccggcccctc attccgcatt cataacatgc aacatttgca caatgtgtat
      541 ctcaaaggct gctgaataga aagccttaat actcatgtaa acaactgcaa accaattact
      601 taatgaatca ggcccacaca taatgaggtg ccagacaaag agctataaat gcatttttgc
      661 gcccgagcct ccgctttaaa gtaaaatccc tcagctgtag tttgggctta actggcacat
      721 gataattatt gtctggggga catcagagga gccacggttt ttattccggt ccggcggggt
      781 ccgcgccgag gtcactcatc agctcagtga caaaacgcgg c
//
LOCUS       KCLJ01002756             680 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 307564cal ultra-conserved element locus
            uce-212, sequence.
ACCESSION   KCLJ01002756
VERSION     KCLJ01002756.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 680)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 680)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..680
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="307564cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>680
                     /note="ultra-conserved element locus uce-212"
BASE COUNT          249 a          119 c          110 g          202 t
ORIGIN      
        1 aacatgcaaa ccctcaaact ttcaagtatt cacaaggtat aaaaaatggt tttaaaacaa
       61 atgatttgac agctgcaaat gcaggataac acctagttac attatagaaa cagtgtggat
      121 aattactttt ttcagaagga aagactccat ggaccacagt cctgtctgaa tttccctgca
      181 gtttggataa tgtgcagtaa tacaaatcct gttgtcacct caaccttttt atcatctata
      241 catcagcaag aatgatgaga gacgtcccat gattctaaca gtcctccttt gaaggatcca
      301 catgttaatt actgcactaa ttatggtttt tgaataacca aatgaagtaa gcagtctatg
      361 ggaggtacag gcataaaact cagactgaga aaatactagt tactgaagtc atcagtgtaa
      421 actgacacat tgaacattct taaaaaaagt agaagtagat tttaaaagac aagcatcttc
      481 aataattagg gttccataca ggaaaaagaa atgttatttc ttaatggcaa gtgcatttaa
      541 actgttatct aaagatctga aggtaagcct gcttaattca ctgcttcttc ttttgttatt
      601 aggaaaacat aattgttcca aataattagc actagagtac atcacaagct gacaacaaaa
      661 ttatagaaat cttcatattc
//
LOCUS       KCLJ01002757             720 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 307671cal ultra-conserved element locus
            uce-3900, sequence.
ACCESSION   KCLJ01002757
VERSION     KCLJ01002757.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 720)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 720)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..720
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="307671cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>720
                     /note="ultra-conserved element locus uce-3900"
BASE COUNT          182 a          161 c          117 g          260 t
ORIGIN      
        1 tgcatgtact gttgcatgtg tgtattactg taaatgctag ggatttcttt tctttggctg
       61 ctcttcattt tttagcaagg caatataaat ctcttttgaa atgaattgca attattatta
      121 ccatgcatgg agtgactttt tatgtttagc cacttgtatg tggctaaatg agatgtttct
      181 ctattatcat cattgaaaca ttttactctg tctttctgga gaatgacagg taacaggttg
      241 tagttttgac tgttttgccc actacaggtg accaactgag tgccatactg aattccattc
      301 agtcacggcc aaatctccca gctccttcca tctttgatca agctgcaaaa cctccctctt
      361 cccttgtcca cagtccattt gtgttcggac agcccctttc cttccagcag cctcagccac
      421 agcttcagag taagcagcct tacctgcctc atccgtccat ttctgcagct ttcacattgc
      481 tgttctcagt tacttaccag ctgctaatca tcccacagtg cacctttctg aagtttttca
      541 tgattcagaa gcatgtgaag taatgctccc aaagaagtat acttgttcaa ctaattttta
      601 tattgacagt attttgggtt tgtatgtgtt cttcaccata gtgcatttcc aatattttat
      661 gcaactctgc tataaataag gtaaatattt catatatgat aattccttta acatcaaaaa
//
LOCUS       KCLJ01002758             449 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 307785cal ultra-conserved element locus
            uce-2690, sequence.
ACCESSION   KCLJ01002758
VERSION     KCLJ01002758.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 449)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 449)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..449
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="307785cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>449
                     /note="ultra-conserved element locus uce-2690"
BASE COUNT          150 a           82 c           96 g          121 t
ORIGIN      
        1 aatatgagga gtgattccca aaccgaagac tggcaaatag ttacccagct gctacagaaa
       61 tagcaagata gattttaaag aaaagaaatt aaatgaaatg gatattagct ggaaacatct
      121 gtgttcacca cagagcaaaa tgcatattca gcagccagtt tattggctct ttagaggatg
      181 tgaatggtgc attgtaaata atgacacgcc tgtaataaat tcccagtaaa aaagagaggg
      241 ggactgagcc tgttcctccc acaattcaca tttctgggtc cctgctgtga gtgatgattc
      301 acagcagtca caaattcctg ttttcaaaat gctattgtat actccagggc tttcattaag
      361 ttttacacta gcaagggaaa tttaaaactt gagagagaga gagagaggct ctgtggtgac
      421 attcatttaa cactcactgt actgcactg
//
LOCUS       KCLJ01002759             454 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 307888cal ultra-conserved element locus
            uce-3273, sequence.
ACCESSION   KCLJ01002759
VERSION     KCLJ01002759.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 454)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 454)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..454
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="307888cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>454
                     /note="ultra-conserved element locus uce-3273"
BASE COUNT          126 a           77 c           83 g          168 t
ORIGIN      
        1 cttccaaatt gcaaagattt tcagtgagta atggttagga tcttggttgg tttcatgttt
       61 gtttttatct ttacaaaaag atattaaaga atctattttg taggtcagga atataacttt
      121 ttgaagatgg agcctggaga ggtgaactcc ctgggggaac catacgactt tgacagcatt
      181 atgcactatg ccaggaacac cttctcaagg ttggagtctc aggttatacc ttttggcttt
      241 taattctctt cctgtctgtg aatgctaaga actatgcttt gaagtatttt taaatccctt
      301 aaaatgtccc ttgtcctaca gcagtcaaag cacagcttgt ttattttaag tcaaaataat
      361 ttaattatat ttgaaaatgc gtttcttttc tgttcagttt caaagcagcc ttttgatctt
      421 gcctcagttc tttagatttt cagacaagat aaac
//
LOCUS       KCLJ01002760             602 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 307993cal ultra-conserved element locus
            uce-2407, sequence.
ACCESSION   KCLJ01002760
VERSION     KCLJ01002760.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 602)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 602)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..602
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="307993cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>602
                     /note="ultra-conserved element locus uce-2407"
BASE COUNT          162 a          128 c          143 g          169 t
ORIGIN      
        1 agcagtttat ttcataccag ttataacctt aatgctagaa ctgtatatta atcacaggaa
       61 ttaaggaagc tgaattctgc aaacatgttt tcctgaaagc catttaaaga atacacatgt
      121 ttgtcaggtt cctcatcctg cagaggtgca cagtgctttg caggcttttg gtaagtgaat
      181 cctgttatgt ttgacaactg tgggatgcag gtggtctctt tctagatgac tccttgagca
      241 tgcccagtgt ggtaagtgaa caagaaacat accttatggg tgccattggg aggaggcggt
      301 tctccagcca tctctccagc atgtctgcac ctcaggctga ggtgggcatg ttacccagcc
      361 aaaggtaaaa acatgggctt ttcacctttc ccattaacca gagcagaaat ggccctcaga
      421 gaggtgggat ggtggaattg gtgccagcac agtgatgcta aatttattaa tcctggcaag
      481 ggtgcagagt tggagatctg tgttgtatac tgtcatcccc agaaacagtt tcagaaacac
      541 tctccattat ctgctacaac tgaacagcag ggggtattca ttgaacccca tacccagttt
      601 gt
//
LOCUS       KCLJ01002761             894 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 308197cal ultra-conserved element locus
            uce-881, sequence.
ACCESSION   KCLJ01002761
VERSION     KCLJ01002761.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 894)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 894)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..894
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="308197cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>894
                     /note="ultra-conserved element locus uce-881"
BASE COUNT          272 a          179 c          174 g          269 t
ORIGIN      
        1 gaatctgagt ttctgttgag caagcagaat ttaaatggcc ctgcccaggc tgctgactag
       61 atacaaatac attcagtgtt agaaaaggtg gagttttttt gctgttgccc catgctggtt
      121 ttggaatatt tggagttacc cacacttaca gatctcatca taccaaaatt ataaaatgca
      181 aaattgtttt actattttct atgtcaaaat acaatatatt aaaaacaagt cacagacaat
      241 tcttttcctg taaaggttag ggattctcaa tgtacattca gagccataca cacaagtgca
      301 aataagtcaa ctaccacagc tatttaatca ggagcgtttg ttgatttgag cagagcccct
      361 atgctgtgaa atgaaaaaag aaaaccaaat tttcttgagc aatcttgctg ttcctgcttc
      421 aggtgctagg ccatttcact aaagcagctc agacgagaat gtcattagtt cctaagcccc
      481 aggtgaattt gccactgttc cacatgatta agccagataa ttgtgtgttg atagcgaatg
      541 tggttggtga aatacaattt ctaggacctt cctaaacaaa cacaatgtag aagtgagtca
      601 aagtgctgtc atttcagtcc tttgtcacag gctttgcact tgcagacatc tctggtgagg
      661 actggcgaat aattctgtgg catgtcactg tgctcttaaa ggtgacctgg ctcagaaagt
      721 ggatcataca tcttttgcca aaggcctggc taatgtgccc atgagcagca cagacctcta
      781 acattagtcc attttaaact atgcatgctc gagattgctt tgtcttcaaa taactttaca
      841 attccacaca atgctttcag aagtgattaa aatgccacag taatgtgcaa ttag
//
LOCUS       KCLJ01002762             760 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 308310cal ultra-conserved element locus
            uce-2422, sequence.
ACCESSION   KCLJ01002762
VERSION     KCLJ01002762.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 760)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 760)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..760
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="308310cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>760
                     /note="ultra-conserved element locus uce-2422"
BASE COUNT          225 a          183 c          173 g          179 t
ORIGIN      
        1 ggatcccagg ataactcagg gagccatttg gctttgcaga ctgagaaggg aatcaaatag
       61 ttgaactctt agtaaacatg caaacacaac tggttgtctt tgatgatttg ttagcttgga
      121 cctgagccag gggacctggg gattgcagtc caagttccta gagctccaca gctgacatgc
      181 agagcagcag atcacagttg ggatgagtga aacttgttat cagttgaaga ggcagccagc
      241 aggtggaatc ttcctatatc tcctgctcat ttccaagctg gcaatcttgg ctgaacctga
      301 gtcacctact taataaaaat tccatattca gtccatagaa atgcttccag cacagttaga
      361 tcaatttcct ctaagcagca ataaatgtgt tttcctttaa aaggccaaca caagcacatt
      421 atcacagcct ataatcccca ttctctctat tagctcaaag tacatcctaa aggccaaggg
      481 tcgcagctaa agactaatca gtctcattag cctgtctaat ttatcttaac tagggggaca
      541 caaacacagt aaaactgtta gggagacttt ttgatcagga tatgggagtc attcatcagg
      601 gtcctgcagc ttccgagaga aactacccag ggacaaagcc attctccaag gaagctctgc
      661 accacaccca ggcaggcagg atggggcaga aacccccccg ggggctcctg ctgtcccacc
      721 aggcagcatc ccagcaggat aggagagata tggagaagca
//
LOCUS       KCLJ01002763             526 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 308419cal ultra-conserved element locus
            uce-2668, sequence.
ACCESSION   KCLJ01002763
VERSION     KCLJ01002763.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 526)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 526)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..526
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="308419cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>526
                     /note="ultra-conserved element locus uce-2668"
BASE COUNT          124 a          142 c          107 g          153 t
ORIGIN      
        1 gatgctgaca ctcctgagac ctgcatcctc ctcctggttg cagtgccctc ctccctctgc
       61 cccgcctatc ctggggtgag caggcttccc cctccttctg gctccttctc cctcctcccc
      121 tccctgtgct ccacacaagc ctcagctctg tttgtgccca cattagcatt tctgctgact
      181 gcaaggatcg gtttaatttc atgggtgtca tttccttcaa gaaatctctc tctgagcagc
      241 agcccgacga atgcctgata aaacatattt tcctacggta atgattttat ggacccataa
      301 gtcatgaatt tattatgatc tcagcccctg ctgctgattg ctgtaaaatg caaagtaatt
      361 aacagcgagc ggtagcagct attcccacct ggtagcgtgt tcttgggcac gctgatggct
      421 ttgattaaag taatggctaa agtgtacagc ctggctgtaa aatattagca tgattaatgc
      481 actatcctaa ataagaaaca aaactaatgg gcatggttta aggaat
//
LOCUS       KCLJ01002764             416 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 308518cal ultra-conserved element locus
            uce-4131, sequence.
ACCESSION   KCLJ01002764
VERSION     KCLJ01002764.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 416)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 416)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..416
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="308518cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>416
                     /note="ultra-conserved element locus uce-4131"
BASE COUNT          113 a           80 c           85 g          138 t
ORIGIN      
        1 taccatgcag caagccaaac acacacatag gtaacatgaa gagtattata taggaatggg
       61 tttgttattt tctgtgaaac attctctgtt tttataggct ggtttattta gactctgctg
      121 cgaaatacct taaaaggtaa cacagttttt tgactacagc agtaatttat tacaccagtt
      181 aatcttgtaa aattgccctc tggatgtaat aatttgttat tcttttatta gaccttcttc
      241 tgcataccat gtttatcata aagatgtcac cagtgtgatg cctagcaacc agtacaatgt
      301 tccggaggtg tttgcataca ttttcctgag ggagagacct gcctcgtccc tgcctgggag
      361 agctgtcagt gtattctgat gtatgaggga taaaaggagt ccctgctgca gtctcc
//
LOCUS       KCLJ01002765             529 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 308624cal ultra-conserved element locus
            uce-5227, sequence.
ACCESSION   KCLJ01002765
VERSION     KCLJ01002765.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 529)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 529)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..529
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="308624cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>529
                     /note="ultra-conserved element locus uce-5227"
BASE COUNT          190 a           91 c           81 g          167 t
ORIGIN      
        1 tgaagatggt caggactgac ttttaaagct agctgacaca gagtaggata gtaaataggt
       61 ttaaaatatt ttaataaatg cctttatgtt acaggatttt gtattcctga gatgtaaata
      121 aaactctgca aagctcagag aataactaca taagccattt tacaaggagg atatactttt
      181 ccttcttttc tatgaatgta taaagctctc cttcaagctc ttacgaaatc tattgatctg
      241 tgaaacacag tgcactccag ggaggcaatt cacttgacgt tatatatcaa atgatgagat
      301 gaataatgat cagaccattt ggtaattaaa catcttacaa accttctaac tgactgaacg
      361 tcacaaaggt caaatgagat caaaccttgt atttgcaaca cagaacttat atttaacagc
      421 aactattata ctacatggca aaaccaaatt attgtattag gcagtttgaa tacataacag
      481 aaatatttct ttctaatctc catttttact caccagtata gtgcaaata
//
LOCUS       KCLJ01002766             604 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 308734cal ultra-conserved element locus
            uce-6588, sequence.
ACCESSION   KCLJ01002766
VERSION     KCLJ01002766.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 604)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 604)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..604
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="308734cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>604
                     /note="ultra-conserved element locus uce-6588"
BASE COUNT          196 a           80 c          130 g          198 t
ORIGIN      
        1 ttgctgtgag atattgacat tttttgaact gagacatcag aatttgtgag gtgtttgcat
       61 gtggccatta cagtcatcgg ctaggttgga catttacaaa taaacaattg ttattaaagg
      121 atctgtgtgt ctgtggacta tgaatgatgc tggctttcag gagaaagatt gattattgta
      181 tactgacttt ttgtaatctt gtacaattgt aacgcatcac aagtggggaa ggaatattct
      241 ggtttatttc ctagactgtt ataaatgtgt taggaaggca taaatgtaac aagtatcacc
      301 ctgtatataa aggtatcaat gtttgtcctg tataagaaat attaaattac aacagcagtt
      361 tcatttaaac ttctgggtta tgtttgagcc tgaaatttta atgaagtgca atactgagtg
      421 tgcctcatat cttgcagctg taaacataat ggaatgtaca tgtcaataaa gccactgtac
      481 atttttatac agtgaaagtc taacaatgtg taagcctcca gaataagaga gtttcagcag
      541 aaaaagtagg aaaggtaaac tggcggttag gaagtactta acagaaatgt tggataaatg
      601 ttcc
//
LOCUS       KCLJ01002767             751 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 308843cal ultra-conserved element locus
            uce-7216, sequence.
ACCESSION   KCLJ01002767
VERSION     KCLJ01002767.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 751)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 751)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..751
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="308843cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>751
                     /note="ultra-conserved element locus uce-7216"
BASE COUNT          223 a          158 c          161 g          209 t
ORIGIN      
        1 tctcaatcca cactcagtga tctccgtgag tcattccggc ataattacaa tttgagtgtg
       61 agtttgtaga aaagtatcta tttttagcag aagaaactta tagtccctga aaggaggaga
      121 aagaaaaagg aaatctgtaa ccagcaaatc aaggctattt gatattagga gacaccccgt
      181 agatttacaa tgtttgcact cagccaaaaa ccacactgaa cagaatgcct accaggggtt
      241 aaattcatat gcctgcactg cagcctattt ctgtcaacac tcagctcagg aaataaacat
      301 ttatgctttc tgaaatgaaa gtgtattttt gaagactagc cgtcagatat tttttgccct
      361 tcacactttc aaatgcttag ccttttttgt aagttgactg caaagtgcat cagtttgcta
      421 ggcaaaaagt cttgacaagt gcccatggca tcattgtcaa gcacacgagc gtctagtgga
      481 agatggcagg agggttggca caaaacatgc ttccttcaag cttcttacct caggggtacc
      541 tgactcttga gaagcctttc aatccttcca aatgacgttg ttgcagactg tcatctggtt
      601 tatttggagt gtgctgcatc gcagataaac acgctgttta actgcaggtc aaggtacgag
      661 tcatcctgcc agcaaacgcc tcagatacat cagatggctc tgacttggga gatggagaga
      721 gatcaaagtt gtcaccaata tggtgcatga t
//
LOCUS       KCLJ01002768             633 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 308952cal ultra-conserved element locus
            uce-6898, sequence.
ACCESSION   KCLJ01002768
VERSION     KCLJ01002768.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 633)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 633)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..633
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="308952cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>633
                     /note="ultra-conserved element locus uce-6898"
BASE COUNT          197 a          127 c          108 g          201 t
ORIGIN      
        1 ccaatagaac tgttacctat caataaaaaa tttcattcat ttctatgttt cctgtctcaa
       61 acaaagcagg tcagtcgaca ggaatttgtg cccgaccaaa cccaaaagcg tattaaaatg
      121 ggctcttcct tcattaggag acataagtat gacttacctc tgcaatgccg ttggctcccc
      181 tgtatctttt gtacattcct gcacctttca gcatggcaca ctgtgaggac ctggtaagcg
      241 agttaaagtc agatgacgct aacgaatccc agcgcaaatg actgaatcaa taggaaacca
      301 gccactgctg tttaagtgta tcgataaatg tacctttatt ttctcttgaa tggataagtg
      361 tcgcagttaa gagtcctatg gatctcttaa ttgaaagtta attttaaatc aataaagaga
      421 gtcatttaaa tattgatcag tcctttctac acgaattgtt agctgatttt tttgaaacaa
      481 ctttgtttaa atgcaatcaa tagcccacaa tcagtgcgtt ccataaaaaa ttgacagatg
      541 ttcccaaaat gcctgctagg cataatctta tctgtttaca tatgtagcat agatatttga
      601 atccttttca aatggcagaa atgtgatttc ctt
//
LOCUS       KCLJ01002769             625 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 309060cal ultra-conserved element locus
            uce-3235, sequence.
ACCESSION   KCLJ01002769
VERSION     KCLJ01002769.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 625)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 625)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..625
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="309060cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>625
                     /note="ultra-conserved element locus uce-3235"
BASE COUNT          222 a          112 c          103 g          188 t
ORIGIN      
        1 cccagaatac tcctcttcca aacctcttga tagtcattcc tacaaatgta gataaaactg
       61 aaaaaattag ttgcatgtgc cttaagtgaa tgacttaaaa cagaacccaa tgcaagcttt
      121 ctggataacg ctggatttaa aaagttgtaa acaatgctac tggttttatt atggcttgat
      181 gcagacatgc ttcagtatat tacagactct caattttaaa atgtaaatgg tacaggatat
      241 tgataaacca attagcactg atgcaaagca aattcctctt ttatctcaat tacaacatga
      301 caacttaata ggtcaagaca gtctaacatc tgagacaagg gcaattcaat aaaacaactg
      361 catcttgata tggtaattaa gaggaaatgt gaatccatta cattgtcctg tgtatgtgtg
      421 catatgtagg tgaaatttat ttaagcatga tgccctcttg ctgcaaatcc acatgaacac
      481 agagcccagt tgataagtgt agtttcatca ggcaaatttt aaggatgcaa ctgtgcagat
      541 aaataattca tgaaaagccc ctgaaagata cacaatttct tcaaacacag gactctctgt
      601 atataaattt acgaattatt ttgat
//
LOCUS       KCLJ01002770             541 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 309168cal ultra-conserved element locus
            uce-2260, sequence.
ACCESSION   KCLJ01002770
VERSION     KCLJ01002770.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 541)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 541)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..541
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="309168cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>541
                     /note="ultra-conserved element locus uce-2260"
BASE COUNT          171 a           76 c          101 g          193 t
ORIGIN      
        1 tcaaatctga actacaagat tcatgttatt aattttattt agaatatcat gtgtaatgat
       61 gtgtacctta aaactttggt agctttttgg atatcagtgg ttgatctgcc ctaagtttgt
      121 cgttcttaat ccattaaaag acaggcctgc ttgtaaatcc acaggtacag ataaggagtc
      181 actgtttgac tgtgtctgaa cccttttcaa atgaaaaatg tcagtggcag aaagggaggc
      241 tgaattattt tttaaaaggg ttttcaaaga ttctcatgat tcctctggta tcagttaaat
      301 gtgacatgtc catagacatg gctgtttttt agtgtgtaaa agcaagcaaa tgctgcagtt
      361 ttcatctctc tgtagagaga aaatgctgca gtataagtga taaacatgtt acttattcca
      421 taattaacat ataaagagaa agctaataca atttgtaaca atgtgactgt gagaagcttt
      481 catggttttt ttttctgttt ggattcatat acatgtgtaa attagatata attaatccat
      541 a
//
LOCUS       KCLJ01002771             577 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 309280cal ultra-conserved element locus
            uce-7212, sequence.
ACCESSION   KCLJ01002771
VERSION     KCLJ01002771.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 577)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 577)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..577
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="309280cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>577
                     /note="ultra-conserved element locus uce-7212"
BASE COUNT          211 a           70 c           90 g          206 t
ORIGIN      
        1 tatcttaata tgtattcttt aaagaaaagt aatggaaatt ttaaactata tgtacatttt
       61 acaaatgaat gtctatgtct aatctcaagt gcatttgatt ggacaatttt gatgttccat
      121 gttcaattat taagcaaaaa tattcagtta tcagatagtt aattaagtgg aactgactgt
      181 attcattaaa atatttgttc caaacaaatg tatttaacat tcagatatta tgcagaatag
      241 gtgacaattg catatctcca tggagatcaa taatgggatt cagatcattg tgtaaagagt
      301 ctgcaagttt aatgcagaga gaatgtcatt attatttctc tcttaatgat ggtcattatg
      361 cgcaaacact gattgaattc catttgttac ctgcatttga gctgagagga ataattacaa
      421 tttaagtgtc tccattaaaa ttcataaaag aatatgaatg caaaaattat acttgaaact
      481 gacaaaatat actttgagga tataaattgt gttttctgat aggcctctta aaagtattaa
      541 aaatagcttc attttaataa gatggcatgt aaagatc
//
LOCUS       KCLJ01002772             550 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 309389cal ultra-conserved element locus
            uce-5905, sequence.
ACCESSION   KCLJ01002772
VERSION     KCLJ01002772.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 550)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 550)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..550
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="309389cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>550
                     /note="ultra-conserved element locus uce-5905"
BASE COUNT          147 a          118 c          109 g          176 t
ORIGIN      
        1 tttttccaac cccattccag gagcctgtgt ggacaggaat tagtttatgg atgggtccag
       61 tatgtaaata aaagccactg gcttcctcat tatgggggct cttttgaata aatgttagcc
      121 tttaagtgcc agctgtcact ctatgcatgg cctcccttct tacaactaac ctctctgtca
      181 cctcgccttg tctccctaac ttgtcctatt atgcagtacc aagctgagtc attgtttcaa
      241 gcaggaggtg acatgttaat agcttaataa tagtataatc tcgcaaataa taatatgctg
      301 tcacactgtc tgaagcacaa tgtttacagg agaagtggta atgtatgatg acagtaattt
      361 gaataaaaat gaatttactg ctcttgtctc atttgcagta aattttcgca tctttcatgc
      421 acaactggtg ctccatgacc tctttcatta ttgtgttctc agtggctgct gcctgcttta
      481 aagtgaaagg caggcaaatg aaacagaaac ctgcagcaag gggtctccag tttctggaaa
      541 tctcactttg
//
LOCUS       KCLJ01002773             678 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 309502cal ultra-conserved element locus
            uce-6184, sequence.
ACCESSION   KCLJ01002773
VERSION     KCLJ01002773.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 678)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 678)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..678
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="309502cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>678
                     /note="ultra-conserved element locus uce-6184"
BASE COUNT          174 a          135 c          148 g          221 t
ORIGIN      
        1 gtttctgcct tgtgcattat tgtccccatg ctacgaacac catggctgct tccttcttgc
       61 tgacaattga aaactccaat attccatacc ttaaaaatct agtgttatag tttgttgcat
      121 ggttttccac tcattcatgt tgctcctcag taacttagca atgaccagtc gagatatgca
      181 cacaccatat tgttttacgt gtttgactag aacactgaca gattaatagg aagggtaaat
      241 agctctgcac tctgtggtgg ctcagtgtgg gctggcagga ttgactgctg ccagactttg
      301 ttgtatttgc acagaggaag ccgcagcaaa agcctgctgg ggcaaggtga cgtgggtcat
      361 gggtatttgt ttctcatctc tatagaaaac aattgtcctc tcaatggaag acagcttttg
      421 gaaactatgt ggtgggcaag catttgtact tccagagcgc taaataaaat gaagagtggc
      481 agatgtgtta agtgtctgca ataccctgca tatcagattt gcctctattt gacttgctca
      541 gtttagacga gagtattgct cagattttca tgggtatttc ttctatgctg aatacttttc
      601 attgtcttac aaagagcaca aggactccat ttgttcctga tatagctact tagggtattg
      661 cttttaacaa ttgctaga
//
LOCUS       KCLJ01002774             403 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 309611cal ultra-conserved element locus
            uce-6052, sequence.
ACCESSION   KCLJ01002774
VERSION     KCLJ01002774.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 403)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 403)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..403
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="309611cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>403
                     /note="ultra-conserved element locus uce-6052"
BASE COUNT          133 a           52 c           86 g          132 t
ORIGIN      
        1 tattattatt taaaggaaac tgatagagaa tattacaaaa gacatccttt caagagcctg
       61 attgactttg aaaccacttt agtcttccag tttttaaaga ggtttattct gattaactga
      121 cctgaatgtt aacagaactg gaattttaat ttgtattcag actgtaagaa tatcatccac
      181 tcagatgaga cagtgttgtt taattaggtc tagtagttaa ctcagaagaa agtaaatgta
      241 ctgctagagg tttggaagac tgctacaggc tcctgggatt tgtgggagtt tggagaagct
      301 taaaaataag aagtcagtaa ttttaggaat tagaaatgag tgcttagaag gtattggaaa
      361 ggttctgcaa agtctgtagt cagcaacttt taaccttgtg ctt
//
LOCUS       KCLJ01002775             603 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 309715cal ultra-conserved element locus
            uce-2319, sequence.
ACCESSION   KCLJ01002775
VERSION     KCLJ01002775.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 603)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 603)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..603
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="309715cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>603
                     /note="ultra-conserved element locus uce-2319"
BASE COUNT          165 a          137 c          112 g          189 t
ORIGIN      
        1 agctcttgtt acccacactc cctgagtttg tgtacaatcc tttcctcacc agtctctgca
       61 aagcccacaa atttcctaga aagcacattt ccctttgctg tgggtttctc cctacaggct
      121 cagccagcct agcagatggt agtattccct ctgatgctaa gcatgattta caggcttgag
      181 ttattattta tcattattca ttttctgtca ccagtgcatt gaaggttaat agaaatgcca
      241 gcatgctcac tgatttactt agtaaaatat ttgttccaag gtttaggtca gatgattggt
      301 gtctgagcga gtttgaggtt tatgcattat gaaaagcaag ctgacttgac cttgagccac
      361 tagcaccagc actatatatt actttagtgg agtgaccttc agagccccaa gacacactag
      421 atgtattcaa cacatgtttt cttctcccat gctactgaca ttgtacacat tccagctgaa
      481 cttacgtaat gtaagatgat actcactttt catctaatga atttgagtag gatgacacat
      541 tcagctaaag caccttggag gtaacaaact acctttgaat cccagatgga ctgaggctca
      601 agt
//
LOCUS       KCLJ01002776             687 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 309819cal ultra-conserved element locus
            uce-4360, sequence.
ACCESSION   KCLJ01002776
VERSION     KCLJ01002776.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 687)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 687)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..687
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="309819cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>687
                     /note="ultra-conserved element locus uce-4360"
BASE COUNT          194 a          132 c          138 g          223 t
ORIGIN      
        1 tgatgaattg taggggagaa ctacccaagt ctgtctgttt tggcttagat cagcttttct
       61 tctcattata atttaagtct ttaagggtct tcagcaggag cctgtaaaag tcagatcact
      121 cactgctgtt gaatggccac tcgggccgtg attcatgcgc ggccgtctct ttgtgccgca
      181 gaacaatggc tttgtgccgc gcccgcacac aaagggttaa aaatcctgca agagctgaaa
      241 actatggatt gagcaaaatc tccctgtcag ctctctgtga ttttgctgag agcacttgga
      301 catgctggca ttggatttac aaattgaaaa tcattaataa ttctaaccag gctgtgataa
      361 atctgagatc agtctcgatg aacctggaca ccatttcata aatcaaaaag attacttagg
      421 aattttttaa aatctgacgt caaaatgtca tggttactaa tggtttttgt agatctctta
      481 cagtgatata tcatttatct acgctacatc taaaatgtga caccagggca gaaatgtgat
      541 gtctttaata tcatgaatac attttatccc ataataaagg tattaacaac ttcttgctgt
      601 gaattgtact tgaagttctg tgcctgattt agtgctattg ttatattaac tggttttccc
      661 ccaaatgtgt gcaggcaaac tgttgct
//
LOCUS       KCLJ01002777             487 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 309926cal ultra-conserved element locus
            uce-4744, sequence.
ACCESSION   KCLJ01002777
VERSION     KCLJ01002777.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 487)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 487)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..487
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="309926cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>487
                     /note="ultra-conserved element locus uce-4744"
BASE COUNT          149 a           95 c          102 g          141 t
ORIGIN      
        1 ataaacaaac aagtgaaaag atgcaatgag gtgtaagaat agatttgcac agggcagaca
       61 actgaacatt taatttattt acctctccta acagatacct gtggtgacat ttattaataa
      121 acggcattat caggtgtctg atatgtagct cacagaaatt aattacccag cccatggtaa
      181 aaccataaca agcctgcagt gctgtaacat ttgtgctaat tgaaaatgag ataagtgctg
      241 tgggtgcaat ttgcattcaa tgcagtgtat taattatctt cagttctctt catgataaat
      301 atacctgact gaaccactct gctaatttac tgggtaatag agtcataagt ggattccctt
      361 aggtgaccag ctacaggcat cgggctcttt ggaacatcaa ggccttcccc tttcctgagc
      421 acttatatgg gttagcagcc atggatcact tttcttgcag gctgggctgg aagtacgtgg
      481 cagcaaa
//
LOCUS       KCLJ01002778             446 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 310033cal ultra-conserved element locus
            uce-4729, sequence.
ACCESSION   KCLJ01002778
VERSION     KCLJ01002778.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 446)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 446)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..446
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="310033cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>446
                     /note="ultra-conserved element locus uce-4729"
BASE COUNT          162 a           65 c           78 g          141 t
ORIGIN      
        1 aatcatcagc aaagggaaga aatcaaattt tacactgaat acttttcact gcttatctta
       61 cgaaattatt attatttgcc ttcttagtta cttgtattca tcagggtgat gtgtgcagat
      121 tgtgagaatg ccaaacattc tcaaaaaact gatgagtaag cagctgctct ttaaaccctt
      181 cacagtttat agccacattt acataacatt aaataagtca acaaaggcat cattagctcc
      241 cattaaaata tgagcgaaga aatttaaacg aacaagagaa gctaattggt aagtaatgtt
      301 gtgtatcaaa aattatgact ataagattcc aaagttaatg agaagctcta caactgtgtt
      361 tactaaatgt tcaaaaatta aattaaaggt gaatgtagaa aagttttctt gctgttgttt
      421 gggctgagtg agaactgtga aagttg
//
LOCUS       KCLJ01002779             592 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 310138cal ultra-conserved element locus
            uce-5972, sequence.
ACCESSION   KCLJ01002779
VERSION     KCLJ01002779.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 592)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 592)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..592
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="310138cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>592
                     /note="ultra-conserved element locus uce-5972"
BASE COUNT          216 a          119 c          107 g          150 t
ORIGIN      
        1 taaacagaga aatcccaaac tatcataaca aatcctcccg tctgaaagat tacaagcgtt
       61 tgaaaaccac attatatgac actccataaa gctgtttttc aattgtgcaa ttacctattc
      121 agcagttaaa taaaagtgaa atattgactt aaaacaatgt taatggtcaa agaatcatta
      181 agaaatcctt catcataact ttcacagcag gtggcctgta aaatgatcaa gaataatgtg
      241 ctggattctg tagccaccaa ggtcagtttc tgcatacaaa tcttgcaaag ggaaaaaaaa
      301 gaccttcaga aagtgggcca ttcatctgaa ccaagttcag agaatttcca gcactgtgaa
      361 aagatatgtt atgcaagcac atagatgtat tcagtggggg tagactgaac cagctacatg
      421 gagactacaa aggagccctc ccatggctca tgaataagtc gaggaaatga tcagaaaaaa
      481 atgcagagat gtttagacag atggcccact taaaatgcct gggacagggc ataagcaatt
      541 ttaatgaaac tttagatcta ccatataaat tttttccctg ccctcccccc ac
//
LOCUS       KCLJ01002780             718 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 310249cal ultra-conserved element locus
            uce-2152, sequence.
ACCESSION   KCLJ01002780
VERSION     KCLJ01002780.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 718)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 718)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..718
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="310249cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>718
                     /note="ultra-conserved element locus uce-2152"
BASE COUNT          215 a          114 c          152 g          237 t
ORIGIN      
        1 gaggcattgc ccagatttgt ataagcttca ggtttctttt aaagcaacaa ctcatgcttg
       61 agaagtggta gttaatgaag ggggagcact tttaaatgtg ccatgtgtta ggagaatgag
      121 actgtgagca agcacaggac caaagttggt tttcataggc acaagcagtt gaaattccta
      181 caattaataa gtgcagtgaa ggggttaaaa agctattggt tagtttgaga aatgttcttt
      241 tttagttttt tcctggccta gtctagagca accacgtgat acactgaatg cctgccagcc
      301 tctttcttgt tgatcctccg gagaccatct gtgctggggg cattgattag agtgtgtctg
      361 ctgggattac atcttttctg ttgccatgcc aactaatcag ctgattttgg ttaccacaga
      421 aacaaaatgt cagagctcac agtacggtaa catgaattca gcacaacaga aaatgttttc
      481 ttaattggag acccttttga ttttttggat tctatgtaaa aggcagcttt ttaaaataag
      541 aactgtgcca attttattga ttaaaagcaa tgtgtaaaat tctactttac atgaggaaat
      601 taaatttctt tataagatgc ataaattttt atatgaagaa tgtgtttttc tattaaaatt
      661 tgctaatgcc agtgcctcta agagctttgg tcatgtgagc ttaacaaaga aacatttg
//
LOCUS       KCLJ01002781             584 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 310360cal ultra-conserved element locus
            uce-5017, sequence.
ACCESSION   KCLJ01002781
VERSION     KCLJ01002781.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 584)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 584)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..584
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="310360cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>584
                     /note="ultra-conserved element locus uce-5017"
BASE COUNT          157 a          113 c          141 g          173 t
ORIGIN      
        1 ttctgcagtg cttatgttga actccttctg ctctgaggct ccgcagggaa tagaaggttt
       61 cgttatgatg cagcaactag tcaccaaaca ggccaggctg agcagtctca tgttatggga
      121 aagattacac cctgatcatc aaacttttgg caggattgtg ccttgtaaaa atcactccca
      181 ctggaagttt tgaggcagct ttttcaggag aaggggagtt caatacagca gcagcacttt
      241 ttcattgtta aatggatgca tatgctggag acactacaaa ggaatttgca agtttgtcag
      301 gcttcccagg aatgtctttg gcaggtcttt gtctggaatt ttctggagac tggaacactt
      361 gtgctctgta tgcatatgta tatcctgtaa gctggtaagc tcagagagca aagaaggaat
      421 gtcacctttg gccagatcag ccttggtaca gatttctcac tttgttagcc ccagttgtta
      481 ctgcaaattc aaatctgtac atgaaatgaa ggtgctttag tgtcagcaag atggccagag
      541 agatggtttt agaaaaattg gtacatttca ctgttcacac agtg
//
LOCUS       KCLJ01002782             646 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 310468cal ultra-conserved element locus
            uce-1236, sequence.
ACCESSION   KCLJ01002782
VERSION     KCLJ01002782.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 646)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 646)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..646
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="310468cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>646
                     /note="ultra-conserved element locus uce-1236"
BASE COUNT          219 a          103 c          132 g          192 t
ORIGIN      
        1 gaattagccg cgctcgggca agaggggaaa ggaaagggag agggagggaa aaaagtcaac
       61 aaaaatcatc cttgtaaaat aagccatatt acctctagga ttgcccccca aataataaag
      121 gaaggtggat cgaaaggtcc cagattgagt gacagtcata tttctcgaac taactggttt
      181 ttaaaagaaa aggttaggac ggctggagaa tgcgggagag agatggctga gctctgaaat
      241 tgcttacaga attacatttg tttttcttgt gattttatta aaagtcactc ctcatctcca
      301 gaatgcgtga aaatatctac tttccactca gatacaccac attaacttgt tggaggcgaa
      361 tttgtttgtt tgtctatttt atttatttgc cagataagat tgatgcagtc ttattagcgc
      421 tatatctagt tagaggaaga gataaggatg agatgttttc tttttattcc aattactaga
      481 cttgtcacct aactgaataa ctgatatatg attatttatc ttgagtaaat agaaatcaga
      541 aaagcagcca acttaacaca tacaaacaaa atatgtatgt tccttattac tatataccac
      601 ctatgcaatt gaagggatta aaactgtggc cttaaagaag aacgtt
//
LOCUS       KCLJ01002783             499 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 310576cal ultra-conserved element locus
            uce-6173, sequence.
ACCESSION   KCLJ01002783
VERSION     KCLJ01002783.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 499)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 499)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..499
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="310576cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>499
                     /note="ultra-conserved element locus uce-6173"
BASE COUNT          172 a           87 c           84 g          156 t
ORIGIN      
        1 aaatgtaaga aagcttgaaa gacttaaacc aggtttcatt taataagaga aaataagaag
       61 cctgccacac agaaaattac taaattactc tcggggttcc actcttctct tttgcctcag
      121 gcttttggga cattaaggcc atgatataaa tcctggtcag tgtttttcta agtagcagaa
      181 acgagagttt attagcatca cagtggttgc ctcaataatg acaaaacagt tgctcattac
      241 tgctcattag attcatatta gattcatttg caatagcaat acatcttcta ttcatactcg
      301 attgcaaaac aacagatatg atttgacacc tgctgtagta cagaattcat tagaaagtaa
      361 taatacaaat aggatttcaa tggatggagt cttatgtctc tgatgggtct aaaatttgtc
      421 atttaatgta gaatttatat aggataaata tcacagcagg cagtcagctt ctccaaatca
      481 tgtgctccaa taaaatatc
//
LOCUS       KCLJ01002784             662 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 310683cal ultra-conserved element locus
            uce-4866, sequence.
ACCESSION   KCLJ01002784
VERSION     KCLJ01002784.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 662)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 662)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..662
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="310683cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>662
                     /note="ultra-conserved element locus uce-4866"
BASE COUNT          178 a          151 c          160 g          173 t
ORIGIN      
        1 agctccgact gtgcaaggtc ttcacccttc ctgcttacca tctccctagg gagcagcagt
       61 gtgttgtgga aagtgctggt aaccaaagac agcaatgcaa ccctaagccc gatggctcca
      121 gcccagttta tcccctttac tgttccctct cctgttgttt tttttttttc ttttaacatg
      181 caagttgcca tgaaaaattt gttaatgaaa tatttgctta gaagtctgct ctgggctagg
      241 ctgataacct atctgtgttt gagtttggct tcccatattc taaatactca tcttctctct
      301 gtttagctta ttgattggtt tggcaggaaa agcagccttg tcatcagtga ccaaggtcaa
      361 accaaacaaa aagggacagg aaaaaaagga aagaagttgg acggatgagc tcagtgagat
      421 gggagtggaa tatctgacct cctgcaactt tccttggaga tgggtcctgg tctgcccagg
      481 agcctgctgg cttttgcaag gtcacaagaa atcactgaca ccatcagaac cactcggaaa
      541 ctgctggaga gagagagctg agaggcccac agagggaaga ggtggacaca gccacaccaa
      601 agcaggattt ctcctgagag ctctggtgca gagcaaatga ggtgctgagt caaatatccc
      661 aa
//
LOCUS       KCLJ01002785             800 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 310795cal ultra-conserved element locus
            uce-5615, sequence.
ACCESSION   KCLJ01002785
VERSION     KCLJ01002785.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 800)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 800)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..800
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="310795cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>800
                     /note="ultra-conserved element locus uce-5615"
BASE COUNT          241 a          147 c          186 g          226 t
ORIGIN      
        1 gggaaactga gataaatggt gaagcatttt ctgtgttgac atgatgttcg cctgtccgat
       61 tgcatccttc ccaacagaca gcagagaagc aattacaaaa aaagacatct gtgccaaggt
      121 ttggctagcc agggagggca agctcttgtg tttaagaggt agagaatcca atcgatgaaa
      181 atgtctgggc ctgttagcac caataaagct gaaggccact gggaagctcg ggaagggtct
      241 tttgttgcgg agatagaaaa gaggccgaag ctgtgacact tggggaggaa tagggtcagc
      301 cagtacgatc atccatcttc ctcaatggca gctttctgtc agtttttaac cctgctcagc
      361 agaggatcta aacccctatt gttggcacca gccaattctc agccaagtgt aaatgaagtt
      421 aatattcact gaccttatgc atagccaatg aaggcccttg atgtcatcct ggaaataatg
      481 ttatctgaca cttcaaaaag cagatgttga caggttgttt gtggtttttt gctgagccag
      541 tacgcaaaga cgcattgttt aggcatttaa actgatttcc ataataacca caaataggcc
      601 tttttgacct taaattgaca tagttatggt tttagtttgc atatcatgct gctcgcaaag
      661 cctggctaac ttgcactaag tggtcagggg aagtagcttg gttcacttag ataagaaata
      721 tatgggtcag tgagaaattt atttatgctg ataaaacagt gagttattaa aatagtttaa
      781 ataattcaaa acagacattt
//
LOCUS       KCLJ01002786             614 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 310904cal ultra-conserved element locus
            uce-546, sequence.
ACCESSION   KCLJ01002786
VERSION     KCLJ01002786.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 614)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 614)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..614
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="310904cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>614
                     /note="ultra-conserved element locus uce-546"
BASE COUNT          208 a           98 c          107 g          201 t
ORIGIN      
        1 aatattactc ggcatgtttg tcaatgtgct gtataattat taatttgttc attgaggcaa
       61 ctatataaat aaatagaaag cagaatgcca tgattaaact aacattagaa atccagggtc
      121 aaggagccct gttatacagg gatctaaata gctttcccag gtcctatttt tacatctcca
      181 tacagatctg caggtctgta actgcgaatt aattggcaca catttagatg ccaacagagc
      241 ttttgtattc tcagtgcaca ttttgtcttc tcagagtgag atgttagtaa tggaggtttt
      301 aatattaccc ctaggggagc accagaaaat cttaacaatt tccttcacta gagtattttc
      361 attagagcta aatgctgtgc aatttacatt tgaaatcagg tgtagggtaa gtataatgtg
      421 acaagacatg ttgcaatgtt agtttttttg ttcaaatgtt ccttatttac tgcaatatac
      481 cttcaaaaga taagcatgca attaaaataa atatcttgat ttttaaccac tcctaattga
      541 actgttattg ggataatagg agcacaaaat agaatcaggt ttaaaaggac ccaaagcaca
      601 agattaaaat atta
//
LOCUS       KCLJ01002787             415 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 311015cal ultra-conserved element locus
            uce-5321, sequence.
ACCESSION   KCLJ01002787
VERSION     KCLJ01002787.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 415)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 415)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..415
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="311015cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>415
                     /note="ultra-conserved element locus uce-5321"
BASE COUNT          134 a           80 c           81 g          120 t
ORIGIN      
        1 aaagggtgaa tattggtagc tggagaatac gttctgcctt cccctcatat tgcagctgga
       61 cagcaatagc cagccttcac ttatttattt cctgcacaga ggggaggaaa atataggtcc
      121 atgaatcaat ctagataatg gggaaggctg aatgtaataa ataatacagt aacaacccta
      181 aactaatgag ctgttgctaa ggtacatttc acaggctcat cctctatata aaaagtcact
      241 aataatccct tggtgtaatc agatgataaa gctttgccat aaggcaacac ctgtgcaatt
      301 aaagctgtgg attcttttgc acgtttcatt aatttcagga ttttgtaaag gcacaatgac
      361 tacactaata atctagtcta cttgactcca tgtctactgg aaacagggtg tctaa
//
LOCUS       KCLJ01002788             602 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 311116cal ultra-conserved element locus
            uce-675, sequence.
ACCESSION   KCLJ01002788
VERSION     KCLJ01002788.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 602)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 602)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..602
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="311116cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>602
                     /note="ultra-conserved element locus uce-675"
BASE COUNT          201 a           88 c          109 g          204 t
ORIGIN      
        1 tacatatatc cttgaaagca aacctgtatg gtcacattca gtaaatcttt tggtttgctt
       61 ttattaaggc ctgatttagt caggtacaaa tgaaaaatcg gtagtagctt taaagtaaaa
      121 taaaattggt tttgattcag ttcatgtcaa ccatctcatt taaaattagc tcagaggtct
      181 tgtaaaaatg ctagtaatct aaacataata atgcacattg cccaattgct actgtatatg
      241 atataggttc agtgctgtaa tgctttgaca gcccattact gaatgtaatg aacagctatt
      301 tttaaacaga agaaattcaa gttgacagct tggcaatgaa attcagctag tggcataatt
      361 tttgtcgtct tctgtataga gagtggattt caattttgtt taaagaaatt tgtatcatgg
      421 acttaattgg agcaagcatt tttttgcttc agtttactaa agagcttgaa ctaaagctgc
      481 attttgtcaa atcctgaaac ctgcattcct gtcagagctg tgagaagtca gtgattaatc
      541 aaaataggtt gaagtcttaa ggaagagaat gtactagaat tgaatttata atcacaaact
      601 ca
//
LOCUS       KCLJ01002789             706 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 311227cal ultra-conserved element locus
            uce-7787, sequence.
ACCESSION   KCLJ01002789
VERSION     KCLJ01002789.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 706)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 706)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..706
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="311227cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>706
                     /note="ultra-conserved element locus uce-7787"
BASE COUNT          239 a          148 c          126 g          193 t
ORIGIN      
        1 tgggaatgcc cacagtgcat tggcactttc caaaaagcat catgccccct ctgaagaaat
       61 cacagtctaa ggagcaggat gtgacactaa accgagaaat tattctaatt cgagccagca
      121 tgccttgttt accccttact attttttgac ctcactgtta atatgactta acagaaagca
      181 aaaaacccta tcgtccagca caatcaggga ctaagttcat tgagagcagc tataaagcct
      241 taaacaagcc ctttattttg tgttttaaga agtgtcataa ggagttaata ggacacagct
      301 gtacagactc tttctaacaa gcagcttctg tcgctttggt caccacaggt gtctgtgtaa
      361 cctgcaaact cttattacta gtgtatcaaa gttgtgctac ttaatagatt tctttagtaa
      421 aacacaacaa agcaattaca tggctgttga tcgttagtca tcccctcaaa cacagttttt
      481 caaaagaaac tacactgcaa ttttttgtca ttgtaaaata aaagaaacta gagaattaaa
      541 tagaagagca gacaatagaa cagcaggtag tcaactgaac ttagccacta cagatggttt
      601 agaaatagtg tttccttcta caccaacttg tgggataaaa gaaaaggagg aggctcctta
      661 ctgcccatga atggcaatac caaaagactt aagcaacttt ccagtc
//
LOCUS       KCLJ01002790             710 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 311338cal ultra-conserved element locus
            uce-438, sequence.
ACCESSION   KCLJ01002790
VERSION     KCLJ01002790.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 710)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 710)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..710
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="311338cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>710
                     /note="ultra-conserved element locus uce-438"
BASE COUNT          195 a          160 c          128 g          227 t
ORIGIN      
        1 ctcaatacct gaatttggct cactttgata ttgaggaatc ttttcctccc ctgagaaacc
       61 cccacctgta agagggtccc actttacttt actctggaga actgtgtgag tccatggtca
      121 atacagtcag cagcaaaagc gttcgcattt cactacaaag aacatatgaa ctctgtgtac
      181 ccatgctccc tggctttaag aaaacattgt ttcatgttct atctctaatc agccttttct
      241 gcccactcag agaacagaga acttcattgt tatatgcagc tgtcatttgt cccatctcct
      301 tgctctttct gccttcaata tctttgtggt atttagtgaa agtaattttc agttagaaat
      361 cttctgccct ttcagtaagt gcaagtatag cacttcatca atggccaaag aattccaagc
      421 tatctgggat gtatcaggac agttgataaa acctcacaga gcaacctatg atagtacatc
      481 ccatcataaa taaaaaaaac agaaagggcc tttgtcagtg tttatctgta gcgcttttat
      541 tctttgccct tgatttcctc ttcagaaaat tgatgcaccc ttaaattgaa gcaggaagct
      601 tgacaggtga tggttagtgt gataactgct cagatttcat cagccagtgt ttttctggtg
      661 gtgcaattgt aggaactttc agctagatta cctgtcatcc actacatcag
//
LOCUS       KCLJ01002791             626 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 311446cal ultra-conserved element locus
            uce-6758, sequence.
ACCESSION   KCLJ01002791
VERSION     KCLJ01002791.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 626)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 626)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..626
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="311446cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>626
                     /note="ultra-conserved element locus uce-6758"
BASE COUNT          173 a          142 c          127 g          184 t
ORIGIN      
        1 caattagcac catctctgta cacacagcca tgacaaaagg gaagccggga gcctgaatat
       61 tcacccaaag cacttaaaag gccagcatga atcatgaggg tcttgcatgt tttttgtttg
      121 tgtgcagcta gcagtgtggt gtgctattca ttctaggtta agctttcagt gctgtctaat
      181 aagtggccct tgtacaaaaa cgtgatctgt gcttttccag atatttgtat gtcaggcagc
      241 tacacagcag caacttctgt aatcccttct cctgcagtta aagctactag aaaggcttaa
      301 taatatccca gaggcaaaga tgaaacggta tctccacagc tactgtttgc tgtagagagc
      361 ttttgaagtc gagcttaaga tgtctttatt tccctaccag aatccagtgt tgtcatgatg
      421 atgtcttttt gcttgttcca agaggctgta gtgttcccat aaagcattag ggaacgagaa
      481 cagcttttca tcaggggctc ctagaatctg taagtacagt ttgtcactac agaaacccag
      541 agttatccta ccagcaatct caatttaaaa ccccacactc ttctttatca ggtttatagc
      601 agcctcaacc atcactggca gcttac
//
LOCUS       KCLJ01002792             716 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 311558cal ultra-conserved element locus
            uce-1497, sequence.
ACCESSION   KCLJ01002792
VERSION     KCLJ01002792.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 716)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 716)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..716
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="311558cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>716
                     /note="ultra-conserved element locus uce-1497"
BASE COUNT          224 a          145 c          139 g          208 t
ORIGIN      
        1 accaccactt tatttaaact attgtacctc cttcagtaaa cattcagtac atgactgaac
       61 cctgtatgaa cttgtgcttg ttgctggtta aatagattct gagcttaaat gaaaaggggc
      121 tgctattgag catgggacaa aaaagttgca tgtgcattaa tttgcccaca cacaagctct
      181 tacccccaaa atactgcatt cacaggatct tttattaaaa cacccctagg cctcaaagta
      241 ctaaactgaa agcaagctgt taacagaaat gagtaattat tgaagctcta acaggcagct
      301 ttcattgaag ttgattacag cagccatata atcactttta cggatgctgt aatcacagta
      361 gcagggaatg cttgacttgg ttcttattgt tttcactcag ggtggaggta gggggcctgc
      421 aagaaacccg ttttaccacc tcagtacaat ttctgctgta aaggaaatct acacagcgct
      481 gaatgaagca gagaatcatt cattctttct ttattagcat tttcccctcc ctcacatgag
      541 agtctgttga agccaggaaa ttgctgttat tcaatatgca agccagaggt tgtaatgacc
      601 atttgtgagg gtatgaccaa caattacaga ccttaatgaa taggagtaat ctagttgaga
      661 ctaaacacta gtagcaactc tggtgctgtc tctggttaaa ttaaaagaac agcaat
//
LOCUS       KCLJ01002793             665 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 311668cal ultra-conserved element locus
            uce-4716, sequence.
ACCESSION   KCLJ01002793
VERSION     KCLJ01002793.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 665)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 665)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..665
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="311668cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>665
                     /note="ultra-conserved element locus uce-4716"
BASE COUNT          234 a          103 c          131 g          197 t
ORIGIN      
        1 cccccaatga gttgaaaaga aaattgtaac atctatagca cttacaatgt cctgcacact
       61 tctcaccact tctgttgact tctgaaagtc acactcctga atcaggaggt ttaacatata
      121 cactctaggc cataccataa actggaaaca aaacataatg gcttatatat ggcagaacct
      181 ataggctgaa tctataaatt caagatttat gctttgtctt acgaaatgca gcatgtgaaa
      241 aaggatattg agacctggat ggatgcatca agaagtatca atgattgtta cctgcagagg
      301 tgttacaaga aatttcatct gctgcaacga agacgaattg atttctgcaa gagaagataa
      361 aattcacaat actgcttgct gactgggaaa tgtgctagct gccaattgac ttgatgttta
      421 cagatgaagg gtgcttaatt ttaatggatg tggcaagaaa aagtgttgat atagagttta
      481 taaggatcat gaggtagaca tgctgggatc ttttaaatga aataatggtg acatttggat
      541 atggactatg tacaaactct tgcattggaa gcttcatgtt tagtgttaca gatatgtcaa
      601 tatatttatg aagtctaata aaaataaaac aatatattga tattaaaggg cactactgca
      661 aaata
//
LOCUS       KCLJ01002794             526 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 311776cal ultra-conserved element locus
            uce-3381, sequence.
ACCESSION   KCLJ01002794
VERSION     KCLJ01002794.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 526)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 526)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..526
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="311776cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>526
                     /note="ultra-conserved element locus uce-3381"
BASE COUNT          161 a           89 c          109 g          167 t
ORIGIN      
        1 cttaaagctt ttgagatgtt ccttttttat ggagctctag ttgcaatatt tgcagtttgg
       61 atgaatggct gaaggtgcat caaatggcag cattcagagg tatttgacca agaatgattg
      121 acagtgtctg taactactta ttatgtcaaa gcttcagcac accgattgat gggaaatgat
      181 gtataataaa ttagaatgat cacacatcat ttcccatcga ttgaaatgcc aaatcctttg
      241 atggagtaat gagttatggc caatactact cactgtctta gtaggagatt gattgcatat
      301 cccttcatca atgtgatcaa acaactaagg aatctaaagt acacatgtag tctactgcag
      361 tttcagcgta atgtgagagc aataaagtca gtgttgcttc tgtggtgtaa cctggggtgc
      421 atgtgaaaat gtgctcaaat tcattcaata cagaaacttt aaagaaatgt gagctgattc
      481 cctctctgtt tttcatacca acagaagacg ttgaggttca gtttac
//
LOCUS       KCLJ01002795             791 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 311883cal ultra-conserved element locus
            uce-502, sequence.
ACCESSION   KCLJ01002795
VERSION     KCLJ01002795.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 791)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 791)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..791
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="311883cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>791
                     /note="ultra-conserved element locus uce-502"
BASE COUNT          255 a          150 c          159 g          227 t
ORIGIN      
        1 tataatcact gcatgaagat ttttgcaaag gagaatatat tcttttttag attcaaagta
       61 attgctatag aaccacagac cttaattaat tcaggaactt gagaggagtc cagcagtctg
      121 caaatgccgc tgtagtggct ggtagggata actatattct gtaccaagag gtggggaaaa
      181 aaattatatg agttttgaaa cagaacctaa cagaaattat ctcagacgta attcaagtct
      241 ccagctcttg catgtcattg agaagtggtc tggttgtact taaaagcagc aatttcaaac
      301 ctaatagata catgtcaggc aggacaggca ttatgtagca aaaaatgaaa tggtaccatc
      361 ttcttcagct gatggaagta ttgtctcaaa cgctcctcct tggcctgtac ctctgagtca
      421 ctcatgctgt caatcaagtg ataaagaaaa tagccaacag cttctgtgga aaaaaacaag
      481 agaaagcatt ccactaaaat taccgagact gtcatgttat caagattaat ttataagaaa
      541 tcattttggt gtgagatgtc accctgatga gaggctctga aatggcaaca atgatcactg
      601 aggcatagag attatgtggt ttgggagcac atatctaact ggtgagtgaa aggaatatta
      661 attattttca gacctagtga cagcttttca gtacagaatc ttacttcaat ctattttttt
      721 ccactaccgt gtgacagaag tggtactgcc caaggccttc cccccctttc ctgcctgcta
      781 ccccaaatag t
//
LOCUS       KCLJ01002796             667 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 311994cal ultra-conserved element locus
            uce-254, sequence.
ACCESSION   KCLJ01002796
VERSION     KCLJ01002796.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 667)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 667)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..667
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="311994cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>667
                     /note="ultra-conserved element locus uce-254"
BASE COUNT          198 a          117 c          120 g          232 t
ORIGIN      
        1 atactccaga taatggggag agggtggaag ctaaaagtca ttaagccaga aagtaccata
       61 aatcttacaa gtttatgctg ctcctgatac aaacttcact ctaacttgtt ctctctgggg
      121 aaggttcata gttgggtttt ttttcatttt ggggtgagca ataatagtct ttgtaagatg
      181 gctgcagtgt cagcatttat cttgaaactc ttggatatta gttttgactg cagtcacctt
      241 tctgacaagt gttattgcga ctgtgtttta tatccctgtt caggatgatt tctaatgata
      301 atgctctgtc tacctcactg cttcacacta aattatagat gccactatga caggacaaac
      361 tatatccaag tgctaaactc tactcccttt gtgtgatgtc agtgccttca ctactttgtg
      421 cctagaatta aaatcaggat aggaagatat gcaaaacatt tctgcttaaa aataatgttc
      481 tgtcagttat taaacaagtg atatttcatt taatcagctc aaggggatta ttttaaatga
      541 aaaggcagag agtatgattt tattaacaca ttcctgccct agagtcctcc tgtaataatt
      601 ctttacttga ctaaattaaa aagttataat tcagtccttt cacttgctga gagttaaatt
      661 tcattag
//
LOCUS       KCLJ01002797             736 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 312103cal ultra-conserved element locus
            uce-4585, sequence.
ACCESSION   KCLJ01002797
VERSION     KCLJ01002797.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 736)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 736)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..736
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="312103cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>736
                     /note="ultra-conserved element locus uce-4585"
BASE COUNT          238 a          136 c          132 g          230 t
ORIGIN      
        1 ataataataa taatagctgc ccattgtata gggcactgca tgcaatattt ttaatgcctg
       61 ctaatgaaat gtgctattaa ttattaggat gtggtttgca ccagcacgtc tcaactgtgt
      121 attcaaagtg acacaacttg aaaaactgcc tattggaaaa tactccttaa aaagcaaatg
      181 gtatttaaat cagtatgaga acttgtagct ctcaccagct ctgctgcaga gaaatttgca
      241 gctaaggggt taatcagatt agatgggagt ggttataggc tcagtgccac aggttttgcc
      301 ctttgtggct tctcacatcc cagacttgga aaatatgagc tgtgatactg agaaaggtaa
      361 gaagccagca cagccccata gtgataaatg agtttgcatc atctgtcatt agaacttcct
      421 gccaacaggg tcattcccta ttaaattacc acttgtcaat gtttaaaata ctgattgata
      481 aatgactgtg ccaaaactga taacacgaca gcttttattt tctaatattc ttggttacca
      541 cattctgcta cttcaagata cagatatagt atttagtgaa agacaattta atctaataca
      601 aaactaacag gtactgtata acgattggtc ctgatataca ttacatacta ttcttcttgc
      661 caaaataaac ctactggtga tttagtgata cgggtagatc caagtttcac atttcatcaa
      721 atgctagtaa tctgtt
//
LOCUS       KCLJ01002798             811 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 312214cal ultra-conserved element locus
            uce-277, sequence.
ACCESSION   KCLJ01002798
VERSION     KCLJ01002798.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 811)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 811)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..811
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="312214cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>811
                     /note="ultra-conserved element locus uce-277"
BASE COUNT          231 a          162 c          154 g          264 t
ORIGIN      
        1 cccttatcac tgacattcaa aaagacactt gataattacc ttctgtctga acttcaggaa
       61 agttgagttc cacgatctct ttttctttga ttaaaatgaa tgtttgttat cagcattact
      121 atttactacc ccatgatcaa aaacaaataa cccactttgt ttgtttctta ctgcaaatga
      181 attaaattag acgccattag gagcactagc tgtttatatc cttgtttcag cagtggtagt
      241 atttgaagtt tcctgcggta agttcattac tcgtattttg tccagaatta gtgaagcgtg
      301 ctgaaaattg ctaatgacag atgtttctcc actctgtcac acttcttgta tcatttgatt
      361 tggaaagcaa catacggtgt tctgctctat cagtatgtca cagactgtct gtaaacagct
      421 ggtcataact cagttcagtg aaaaccatta ctttccaatg aagtgctgga caccctccaa
      481 attgcatttt ggcatggcct gagctgcata atgcacaaag ttcttctgtt ctgaggttac
      541 ctaaggaagg accccttcca ctagtttatt gtgtttcagg caaatggtta aataagggat
      601 aaaaagaaca ggaaataaaa actttcttct ctctggaaac cataaaagct gtgactggag
      661 ctgtgctaac agacctcacc atttctgttt gtgcctcagg ttgaatgggg tgtattatca
      721 gggtcagggc acacaagatg atgacagatt gaaatgtctc ctatcaaata gttgtggcat
      781 tctaacattg ctatgactat ggggctcttc c
//
LOCUS       KCLJ01002799             628 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 312327cal ultra-conserved element locus
            uce-4443, sequence.
ACCESSION   KCLJ01002799
VERSION     KCLJ01002799.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 628)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 628)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..628
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="312327cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>628
                     /note="ultra-conserved element locus uce-4443"
BASE COUNT          198 a          105 c          129 g          196 t
ORIGIN      
        1 tttgacacat ggggcaaatg cgtgcttaat ttctcccaaa cagaagaatt aatataataa
       61 taattaacac agatgagaac agaattaaaa tcaagtacag tcaggagttt agtttaatgc
      121 caggtgtctc acattctaga tggttgaagg tagcaagggt tttgcctttg gcacttctgg
      181 aagctgaagt gggccttgca cgtaaagaga caggattttc tattcaatgc acaaaaccag
      241 aagcaacagg ctcatttagt atcagtaaag gtcagttaaa attatagaga catcctttgg
      301 agcaaatcct ctgtcatgca tttgcatatt tatgaattag agattacgac aggctatttc
      361 atttattaga gcagcactgc tatagttaat agtctgtcag tacttccatt ataaaccccg
      421 tttttcagtg tttaatatct cagccattta aaatcacatc aggaagcaag tcagtcttat
      481 gttgctggcc aggtgcaatt ttttgttatg gattattttc aataatgaaa tactgctcat
      541 cacatatgcg gatgagccac agcatttctg catagcaagg tgtgtagttt cattgtggcg
      601 tttttcttta ggaaagaagg gaaaagag
//
LOCUS       KCLJ01002800             585 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 312436cal ultra-conserved element locus
            uce-7082, sequence.
ACCESSION   KCLJ01002800
VERSION     KCLJ01002800.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 585)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 585)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..585
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="312436cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>585
                     /note="ultra-conserved element locus uce-7082"
BASE COUNT          137 a          122 c          152 g          174 t
ORIGIN      
        1 ccatcctgct tagtttgaag tgccattttt tgaaaggcag agttttctgt aagaaaagga
       61 aggtcactga tgttgctgag tgcaccattt cccctgaatt tcatgcggct gaaattgaat
      121 tcgtagtgtg gttttgccca agaagcctcc ctggataata ttaagtgctg tccatgattc
      181 tgtagtccag atggcccatg gctggcagct gtagagaact ggtttctgct cagcagttct
      241 tcactaatct ggagtgatcg agccagcggt actttaagag atgtggagtg gccataacct
      301 tccctggttc catcctgcaa gcttcttgga ggtaccccat caccactctg tagtccctcc
      361 ggatggtgct ggctgggtct cccaggtcgc ctaattggat ggaaggaaac tgatgtgagc
      421 aggacttgca caggtaggga gggatgggtg agggggccac tcctttatta gaaggccttg
      481 cttgggtaac atcacttttt gtgttattta tttttctcta aaaagtctca gcatcagtca
      541 gttttaaaac ttgttcgcaa aaaaagagaa gctttttggg caaag
//
LOCUS       KCLJ01002801             379 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 312545cal ultra-conserved element locus
            uce-4045, sequence.
ACCESSION   KCLJ01002801
VERSION     KCLJ01002801.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 379)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 379)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..379
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="312545cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>379
                     /note="ultra-conserved element locus uce-4045"
BASE COUNT          129 a           78 c           69 g          103 t
ORIGIN      
        1 tcatgtccac aaagggttaa gaggtcaaaa ggtttcaaag tttgttggtc aagcaacaag
       61 gtccatataa caagcacagc tcaacagcac aaagcaagta cagattccag gtgtcttcag
      121 tttcttcttg gaaccttggg gggtttggaa tcgccaagtc ccctgtagag aaagatgttc
      181 ccttggcttg cttccgactc cctactgcaa ctcaaccacc ttgagtttaa tgttatatca
      241 tttatctaaa ttgcaaaaga cgaacaagca ataatgagta cacaaccaca aaaaagttct
      301 aaactttaat catgctgggg aattaaaatg agtattcaga ttgtattaca ctaacacatg
      361 ataagaaaac atttcctat
//
LOCUS       KCLJ01002802             601 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 312649cal ultra-conserved element locus
            uce-2266, sequence.
ACCESSION   KCLJ01002802
VERSION     KCLJ01002802.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 601)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 601)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..601
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="312649cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>601
                     /note="ultra-conserved element locus uce-2266"
BASE COUNT          155 a           97 c          132 g          217 t
ORIGIN      
        1 acaattctgc tgtcttcttt ctgagaatgt tactatatta gtgctaagtc tgtttgccag
       61 gatagcttca gtaatctctc cagcagaagc atatttgtgt gccattttgg gaatttctct
      121 gagataggaa tcttgaagat agaattaatt tctaggggaa acttcatagc ctgtgcatga
      181 gtgctttctt tatcacctgt ctccatttgg cattcggaga aggtaaatca aagtgcgcga
      241 tttgttattc tgctccactt gagagctgaa ctaaataaca cttggtctga aattctgatt
      301 gaagttgtag gaggatatac tgtatttaat ttaatgccct ttaatagcat cttcttgttc
      361 agctctgatg ctgtcatttt aaaggttgga tcggagtagt ttttccctgt agggagtggg
      421 aggtgtaatc attccagggg tagtctaaat tcctagaaca ctaatagcca caaacttggc
      481 ctagtgtcca agaagttgtt ttttgccctt agggttcact ttgttctgta cagtgttctg
      541 gatagtttag gtaagtattg catgtagaaa ttgatgacat tttttgtagc aaataatgtt
      601 a
//
LOCUS       KCLJ01002803             515 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 312745cal ultra-conserved element locus
            uce-7221, sequence.
ACCESSION   KCLJ01002803
VERSION     KCLJ01002803.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 515)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 515)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..515
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="312745cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>515
                     /note="ultra-conserved element locus uce-7221"
BASE COUNT          173 a           83 c           98 g          161 t
ORIGIN      
        1 aggaatagaa ccaaattaag ttgttctgaa aattaaccaa taattttcaa cagatcaagt
       61 tcttctgtga tatacattta agaattaaac tcaaatgagc tctttaaagt ggccatgtga
      121 tttaattatt caaaatgtac acaaatttaa tgagttttta aatattaaaa ctattctcta
      181 ttgtcaccac tgtgagctct taatttacag agcaattaag tcaggaccct catttatcag
      241 tacatgtgcg tttgttgaaa acatagtcag tttttattaa ttgatgctat agaaatactg
      301 aggtaaaatt aatgtgtgtg cttcagaggt catgctggcg atagtaggta gctagcaagg
      361 agcaagacgt gagagaaata agtaactgct gttccctgat tacactggag atagctgaaa
      421 tattaagtgg cacaatgggc actatgctta gccaaaatgc ttgcaaacaa atgccccctg
      481 agttttctct ggcaagcatc tgtcatggca gtagc
//
LOCUS       KCLJ01002804             523 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 312853cal ultra-conserved element locus
            uce-4484, sequence.
ACCESSION   KCLJ01002804
VERSION     KCLJ01002804.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 523)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 523)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..523
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="312853cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>523
                     /note="ultra-conserved element locus uce-4484"
BASE COUNT          147 a          111 c           96 g          169 t
ORIGIN      
        1 aacatatcta caacagaatc acatcgatgt gtgcagctgt gagagatgct aatgcttagt
       61 tacatgtaca gaacttttgg gtgagcttcc ttttcttcct tgcaagcaaa agcatcttgt
      121 tctcccatct caaccacttt ttcttttctt tgcagcctct gtttgtagtt atacagttag
      181 gtctccacag agtaatttac tggctgaatc tctcccagaa tccagcttga aaccaagctg
      241 taaaaacagc tgagagtgta aataattcat gcagacaata tgactttttt atgtaaattc
      301 ggtgcattaa ccctctatta taatgatgga cgacagatat gggcgacgtt gccttggtaa
      361 gagctaatgg atggccgcca taaattcact gcacatttta ttgtgttgct ggaaattgtg
      421 ccttcaggca atgctgttta cttttatgta aaactcaggg ttccctaaat attacaaata
      481 ttttacatcc gactcctcag catttgggca cagcacacaa atc
//
LOCUS       KCLJ01002805             369 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 312963cal ultra-conserved element locus
            uce-3199, sequence.
ACCESSION   KCLJ01002805
VERSION     KCLJ01002805.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 369)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 369)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..369
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="312963cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>369
                     /note="ultra-conserved element locus uce-3199"
BASE COUNT          129 a           60 c           84 g           96 t
ORIGIN      
        1 ttcatcccac tagaaagttg cagagcacac agaggatcac agaaaaataa ctcaccgagt
       61 ttcagggaat ttatggcgac tcaaattaca tctcctgaac agggtttaga ggttaagata
      121 tacaatatga aggacaacta aacaatgcgc aagttgtgtt gtaatcacag aacaacatga
      181 gcagctgagc agaaggaaga tgggcagtgg aatgccatac agtaatcagc actgttgact
      241 aatcagaatt tgagacacta gaaggtaata agggtattat aaagaatggc ttattgaagg
      301 agcagctgtt tatgtgtagc tcactgttta aatgaattcc actagattgc catggtatga
      361 gttttcttt
//
LOCUS       KCLJ01002806             528 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 313058cal ultra-conserved element locus
            uce-6034, sequence.
ACCESSION   KCLJ01002806
VERSION     KCLJ01002806.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 528)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 528)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..528
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="313058cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>528
                     /note="ultra-conserved element locus uce-6034"
BASE COUNT          166 a           92 c          107 g          163 t
ORIGIN      
        1 tatattaaaa gctattaaaa cagctgtttt gctgtaggga ctattacttg tgggttgaat
       61 gcagagatat gtgtaggtat ttattcagta atcaatcata gagaggaaag acctcgaatt
      121 tcagttggaa gtttttattt ttatcctttt ccttactact ggtctttaaa cctgctctga
      181 ggaaagctat acatgcccgg ctggtgctca tcaaaagcaa gcaatcacag ctaaatcagc
      241 atgcaaaatg ccactcaacc ttgggccttt attaaaattt gctgggactc aatttgagat
      301 agcgatcgtt cttattaaaa agcaaaatgt aagatagttt ttttatataa atctctggat
      361 ggaatggaat tgttaatcag cataggctga tgtgatttct ctgttgcaaa tcctgccgag
      421 ggctcagaag tggcacatta ccataattcc taggctagag ctggcagctt gaaaaagacc
      481 tgcaagaatc tttaaaatgc ttaagcaaag ctgtaagtca cagcaaac
//
LOCUS       KCLJ01002807             633 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 313168cal ultra-conserved element locus
            uce-5596, sequence.
ACCESSION   KCLJ01002807
VERSION     KCLJ01002807.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 633)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 633)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..633
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="313168cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>633
                     /note="ultra-conserved element locus uce-5596"
BASE COUNT          176 a          160 c          136 g          161 t
ORIGIN      
        1 cattatttgt ctccccaccc cagtgtgctc tgttgccagg tgccagagat accctgaact
       61 cgggaccctg ttgggtcaat gccacccaca tggccatgct gccagcgctg tccttgctgt
      121 cccaaacgat gccacccctg gcagcgagtg tgccaagctc gtcatacatc atttagtgag
      181 actcattcca aatcagcgct aaggtaaaca ctcttattat aattatccat gtaatcaaca
      241 acagcagaac aactttctaa tatgcaatta cagccatcta ttgattttac aatgtaatcc
      301 gctccgattg atttaataac acaattatag gctggctctc gggatattag agtgggagat
      361 tttcataaac tccaaagcaa aaaactaagc ggcttttaaa acaacacagt cagatggctg
      421 tttggggaat tattaacaat atgaaatcct ctaaatctgg ccgtcgttac cttgtgaaag
      481 gaatttctat tacaaaaatg gcaattgaca gcctaagaga gcgcgaccgg gattgctctg
      541 ctgcttttca gtgcttaatc catcgcagag gtgaccacgg gggacaagcg agtccgaggc
      601 tggcaggagt gcaccggcag ccctgcccac gct
//
LOCUS       KCLJ01002808             613 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 313279cal ultra-conserved element locus
            uce-3580, sequence.
ACCESSION   KCLJ01002808
VERSION     KCLJ01002808.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 613)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 613)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..613
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="313279cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>613
                     /note="ultra-conserved element locus uce-3580"
BASE COUNT          163 a          148 c          156 g          146 t
ORIGIN      
        1 ttgtgctgga aaactcactg aggggttggt cagagtggct actttagcac cccttctgtt
       61 tgactctgag gaggacacag gaagaggttc attatcatgt ggtgaagata aaggctttgg
      121 tgacgcagca ttgctgacaa acccattgct acccaaacac acacaccccg aaattaaaaa
      181 tgggaatacg cacattgccg actccactgg cacccattaa acctaataac taagcatcct
      241 catgagtttc tagctctgaa ttatcaaatc tgcaaagaaa acaacatccg tccactttta
      301 cactccagtg gaagaggtgg tccctcgcgg cagggctgcg cagtctcgcc atctggagaa
      361 taaatcgagt gtgaagtaca gtatagtttg ggaccaagct ccgtggcggc agcccagcag
      421 ttagttcatt agtcccaaac ttgcggggat tagtgcggta tcagctctac tgtcggatgg
      481 gatcaggcag gcagagcgcg agactcgggg ggtggcggca aagaggggct tcttgataaa
      541 accacacgta ttagtgcacc tgagtgtgtg cttttgcttt tggaaacagc ttcccatcat
      601 cagtaccttc cca
//
LOCUS       KCLJ01002809             756 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 313389cal ultra-conserved element locus
            uce-4416, sequence.
ACCESSION   KCLJ01002809
VERSION     KCLJ01002809.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 756)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 756)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..756
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="313389cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>756
                     /note="ultra-conserved element locus uce-4416"
BASE COUNT          236 a          156 c          151 g          213 t
ORIGIN      
        1 gtatgcaaaa taaatccctg tgatctgtct gaaatagatg atttttcctc agagtgtaaa
       61 tagagagaaa aatcccatac tagaagtcag ggattctgat tctttacttt gcttctgcct
      121 cagatatatc agtcttacct gaaaagatct actgcaggcg cctcttgcca tgccagtatg
      181 ggtgtgcagc agacaaaaga cataccagaa aggggaagac agatatgcca cttaaattaa
      241 ataggaaatg aattggccag caagttggca tgtctgctga gacaaatcat agacaacatg
      301 tctctcaaca acagaactta tttgttttct cttgccaaca gattcatcac tgcccaggca
      361 aaacaggcaa aatacattag tgtcatggta aactgataaa gagaagtgcc tcaatctagc
      421 atcctcaatg gcgaaagtct tagggctgta ttgatctgtg ttatataaat cttgttttct
      481 gtctgcagaa gtgaatcagg aatgaccctt aaggttaaca aacattgtaa tgtctttcag
      541 ctggggcaga tgcctatgcg ctccacacat tgtgtttggt caagtcccat cttgtcattt
      601 tactgccaag gagcttaact aattgctggc aatcataaga cagtttgatg gaagcaaaga
      661 attcctacaa ttgttgcccc tctttttttt cctcagcctt aacaagcgct caaagccatg
      721 tagcggaaaa caatcaacac tgaattagtc agcagg
//
LOCUS       KCLJ01002810             559 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 313500cal ultra-conserved element locus
            uce-6441, sequence.
ACCESSION   KCLJ01002810
VERSION     KCLJ01002810.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 559)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 559)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..559
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="313500cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>559
                     /note="ultra-conserved element locus uce-6441"
BASE COUNT          139 a           99 c          109 g          212 t
ORIGIN      
        1 cagagcacat gtaatattac acaaggaaat aaagttaatt ttcttgaagt gtggtatata
       61 aatggacttc aatgaaaagt ctttttccta agccacattt gctaaatgca gacttttgca
      121 aggtcagcag ttatactgga gttgaggaga aatggcttca gtggctttaa ctttaccagt
      181 gcccttgatg aggtgcagag ttgtcagtat tctcgtaaaa ttcctcagtg atggcttctt
      241 ctgttctctt tatttcctta agtgaacatc tgtctaattg ttcacctcca ttgctttagt
      301 gctttcctca tgctttctct gtttccagac aataaacttt attttcttca taagaattca
      361 gtctacgcaa gggtattagg cagcttgttt gcacctttta atttctggaa gttttccaga
      421 agggcttttt gctgtagttc caatgggttc atcagtgaat catgtaacat aatgcagcat
      481 tgtgtttggg tttttatccg ttaccttctg tttataaaca tctgcttgga aattttcttt
      541 ttgcatgtgg catatgggt
//
LOCUS       KCLJ01002811             513 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 313612cal ultra-conserved element locus
            uce-510, sequence.
ACCESSION   KCLJ01002811
VERSION     KCLJ01002811.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 513)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 513)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..513
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="313612cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>513
                     /note="ultra-conserved element locus uce-510"
BASE COUNT          144 a           83 c          110 g          176 t
ORIGIN      
        1 agagagtcct ttccatttat ttttgtattt ctttgcatga ttttatttgt ttaagtttcc
       61 tgccatttac ctttgcattt gcatttccta ttgattggca atttttaaac tgtttattgt
      121 gctcttttgt ttggctgttc aagagctaaa acaaaagcca ccaggccctg tgagggacac
      181 atttgcatgc ggcgagcgtt gcccgaggaa aaagtaattg ctaatgcata tttatgtggc
      241 acaaatttgc catttgttta tgcataaaat tatcaatagt gcagggcggc ccagccgtag
      301 aaaatggtga cctttttagc ttaataaaga gaaatcagct gttattgtga agagatcagc
      361 catttattct gtgttgaggg acactgtcgg gaaaatggag attggtgctg gcaatatcat
      421 taaatggaag gccagtgacc cttttggtac agtctattat actttatcta ataggggata
      481 aatgactctg cttggcaaat agattaaaaa aaa
//
LOCUS       KCLJ01002812             550 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 313723cal ultra-conserved element locus
            uce-4646, sequence.
ACCESSION   KCLJ01002812
VERSION     KCLJ01002812.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 550)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 550)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..550
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="313723cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>550
                     /note="ultra-conserved element locus uce-4646"
BASE COUNT          175 a          101 c           97 g          177 t
ORIGIN      
        1 ttaaatgaat ttgaagattc agattgcttg cccactttgg atttagatta aaaaattaca
       61 accagaaaca tacttactca ttgttaaaca tctctgttgc aacatattga acagtgaact
      121 atgtattttg gagtgactgg gaccatgaca gggaaacttc aaatgaaact tggtggactt
      181 gtagatttgg aaataagtcc agaaggctga gcttaatata acatgtggca ggtggcctgc
      241 atttgcctgg agaattcctc tagggcaaga cagctcagca aacacataaa tccttttttc
      301 tctgttatct agtagcacac ttagttgcca tgggaattat atttatgcag cagatcctct
      361 gcagttcagt ttgtgcctaa agtttaactg tacagctgtt accgtaaata ctacatggca
      421 atattttcaa aacacagcac ctttgcacaa atctattact gaaaaatacc attttaatta
      481 cactaggatc atgtttcaag cttcataagt ggtttaaagt atacttcatg tacagctctt
      541 cctaatattt
//
LOCUS       KCLJ01002813             323 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 313835cal ultra-conserved element locus
            uce-2194, sequence.
ACCESSION   KCLJ01002813
VERSION     KCLJ01002813.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 323)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 323)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..323
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="313835cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>323
                     /note="ultra-conserved element locus uce-2194"
BASE COUNT          101 a           52 c           57 g          113 t
ORIGIN      
        1 tcatagagca agtgcatctt cttacactcc tcaccactgt tgtttagtaa cagtgctact
       61 ttgaaaaaaa gaattcccta aacttcttcc tattaaagaa taatgttaat tggttagtgt
      121 atatagaaga aggttatatg gcccattgac tttatataga ttgaaatgct aagcagggct
      181 aagtagaagc atcagtaggg aatagagggt aagtgctcat cagttttatg ttctctttcc
      241 tatttactgc ttaccactaa cagtgttttg caactagata cacaaagttt tcttgggtgc
      301 ttcataaata aaattgtatt ttt
//
LOCUS       KCLJ01002814             557 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 313936cal ultra-conserved element locus
            uce-101, sequence.
ACCESSION   KCLJ01002814
VERSION     KCLJ01002814.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 557)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 557)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..557
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="313936cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>557
                     /note="ultra-conserved element locus uce-101"
BASE COUNT          174 a           92 c          131 g          160 t
ORIGIN      
        1 gtgagatatt aaagggagac atagcttcac tgttttcagt gctgctcagg cttgggcttt
       61 atttccacct taaaatcttt acctggccgt gatctgttgt tccattactg gagggcaaaa
      121 atgggaggaa ttgtctgggc taaattgcaa ttaggcagcc ctgagagagg ctggcaccag
      181 ttaacttggg atattggagt gaaaaggccc gtaatcagcc ttcggtcatg tagaacaatg
      241 cataaaatta aattgacatt aatgaataat tgtgtaatga aaatggaaga ggagagttaa
      301 ttgcatgtta cagtgagtgt aatgcctaga taaccttgca tttaatgcta ttcttagccc
      361 tgctgccaag acttctacag agcctctctc tgcaggaagt cattaaagct gtgagtagat
      421 aatgcaggct cagtgaaacc taagtggcaa caatataaca agagtttctt tcagacctta
      481 gtgttttcag aaaaaaaagg gcgtgttgag gtaatttgta cacatcagaa tgaaaacaag
      541 agaaatctat ttgtagt
//
LOCUS       KCLJ01002815             395 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 314045cal ultra-conserved element locus
            uce-383, sequence.
ACCESSION   KCLJ01002815
VERSION     KCLJ01002815.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 395)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 395)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..395
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="314045cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>395
                     /note="ultra-conserved element locus uce-383"
BASE COUNT          125 a           73 c           81 g          116 t
ORIGIN      
        1 caacatgccc ttgtagacat tccagtgggg ctataaaatg atcgatttac tttaattttc
       61 tactgaatcc tgaaaaaatg gctatcagta acctatccct tcatcatggc atgctgattc
      121 actctgtgta ttaaatttac tggcaaggag caagacgtta acaaaaagta acagataatg
      181 tgaacatttc atgcataatc tgtaatatga gatatgtatt aatagggaaa ttatgatgca
      241 ttcaattatt ctgaaatgcc ttccagagat gttttgattt ggctgcgctc tgatagtagc
      301 agcacagcag ggagcatctc aagtgatgaa taacctaatc tcctaatctc aaaatgggca
      361 ctattcacag ctagcccggg agaggctggt gggag
//
LOCUS       KCLJ01002816             863 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 314147cal ultra-conserved element locus
            uce-492, sequence.
ACCESSION   KCLJ01002816
VERSION     KCLJ01002816.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 863)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 863)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..863
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="314147cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>863
                     /note="ultra-conserved element locus uce-492"
BASE COUNT          266 a          198 c          169 g          230 t
ORIGIN      
        1 gcctgcgact tctgaaccaa agatgttgtc tcggatatgc cacagatgat gctctcctat
       61 cgacagtctc gctgatgtgc aaaggacaga tgcgtctcaa cttgccaagt taaagccaat
      121 aaatccatag ctttatatca ggccagctga tatacggccc cctgcctttt gtcatcacag
      181 gcattcactt cccctggccc ccagaaagag gggtgcatta atcaaacatc aacaaagaac
      241 acttatcaaa cactggccgt gaggacgtcc aggcctccaa caagatgaca gctaaagtgt
      301 gcactggggc tgtaattact atgcagaaag ttgtttcaat gctagcaaag ataataaatg
      361 aatgaaaatt tatggcaggg aatctaagta acaaggaaac agaagcaggg agactggtgt
      421 ttctcccaaa aggccaactt gcatcataat tgccatgcag ttgcaagggt ccttacagat
      481 aattgaccag aaaatgatta agtcatcatc aaatcgcttc tgcttgcaag agttcaaaca
      541 tgtacttaac ctatccaaga attatatttt cactctgtgt gtctgctctg tctctattca
      601 gccttgcggg gaacctgatt aaaaagacaa ctgaaggacc cccgttatct gatcttctgg
      661 ttgccgattt caatagaact taaacccatt acgatttgct gaacttggag ttctttccat
      721 tttatctcag cagtaaaata cactgtccaa atttccagac actgagataa ggactacagg
      781 cccccgtgac ggcttactgt tcctttttaa ttcttttaga ataagaaaca aaacattaca
      841 aaatgatagc aggctgtgca ctg
//
LOCUS       KCLJ01002817             672 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 314260cal ultra-conserved element locus
            uce-7054, sequence.
ACCESSION   KCLJ01002817
VERSION     KCLJ01002817.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 672)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 672)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..672
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="314260cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>672
                     /note="ultra-conserved element locus uce-7054"
BASE COUNT          172 a          110 c          154 g          236 t
ORIGIN      
        1 aggttggttt ccaaaattgc agctgtgttt ttctcttccg atttacaaaa ggttttgtag
       61 agagttgaga atcggatagg tttgccacat cgatctgagg gctgtttgcc taggcatagg
      121 gtttcagtgt atggctggca gtaaggcaat aggcagcaat ttttttgtgc tcagctgcta
      181 catatgacag aggatatttc attcggctgt cagaatgtta ttaataaaac atggggtgcg
      241 aagagggcca ctatttcccc tttcaatcac tatagcattt acaatgaaaa ttttatgcag
      301 tgtgtaattt tcagttaatg cttgacactt aaaatgtcgg tagctgcatt ttgtatggtt
      361 cctgaagggt taattgtatc atgttccctg cataaaagct ctgcttatca aaagtgaata
      421 gaagagtgta tgcaaatctg tgtctgtgac cttttgcctt tccagggtta atttatatgg
      481 tcattaaaga ttttatgaaa tcgagcggcc tggtgcttcg aatcccattt tacgttcatc
      541 tcctaattta tataattcct acctgaacgg ggaaatatga tttttatttt tgtgtgtgtg
      601 tgctgcaatg aaaacagcat gctgtgctgt agggagttgc aagtctggtt atctggcatt
      661 actcagattg ct
//
LOCUS       KCLJ01002818             537 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 314371cal ultra-conserved element locus
            uce-7420, sequence.
ACCESSION   KCLJ01002818
VERSION     KCLJ01002818.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 537)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 537)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..537
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="314371cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>537
                     /note="ultra-conserved element locus uce-7420"
BASE COUNT          178 a           88 c           89 g          182 t
ORIGIN      
        1 aaaagaaagg gaatgtaaaa aggggacaag gattcaaatt tggcttcacc tcctcctttt
       61 ttgtctttgt tttctgcaac actgttttaa ttttagaaag aaattctaaa ttgacattta
      121 aatggtggca gggcaattct cattctctgc cttgtgaaac ggtctctgaa atgtacaatt
      181 atgctgtcat ctttagcact ccacattgga cagagtttaa ttattaatgt gtttccctca
      241 gagaatgact cgatcatgtc acaactctag acaaatacag ctaatgcaaa atcataaaat
      301 attcacttga atactgctga actgacagga aattaattct atgaacactt ttgatattac
      361 cagaaaatta gtttcaaacg cataagactg aaataaatgt gttcataatt tgctcaaggg
      421 taacgctcat cttgcaatca gttggtgtct ttttataaat gttacaagta ttcaacatgg
      481 ctttatgata aagaggacag ttaatgtaat gtattatttg tagacaatat ttccctt
//
LOCUS       KCLJ01002819             596 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 314475cal ultra-conserved element locus
            uce-2253, sequence.
ACCESSION   KCLJ01002819
VERSION     KCLJ01002819.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 596)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 596)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..596
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="314475cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>596
                     /note="ultra-conserved element locus uce-2253"
BASE COUNT          181 a          128 c           91 g          196 t
ORIGIN      
        1 acacaaactg tattgaagcg caatagtttt gaaacgtttt gacaaacaaa ggaaaactga
       61 aattttcatg ccacttccag ttcaattttg tactatcagc acaaaataaa agtacgtatg
      121 tgagagggaa atcataaatt ccatgccttc catctaaaga agcagctaat tcttaccccc
      181 gtttcataaa tgtttgtatg tcaaaatgat cagaagtgtg gttaacatat gttatattaa
      241 tccactgtat ctacattttg ctatttctcg aaggattggg tcattatata tgcagagaag
      301 ggaaatggct ttatgacctc tgctttctcc atgacgcgtt ctcctttcag cccccagcta
      361 tcaatcaagt ttccattttg tttcatggca gcagacatcc caaacactct tattagtact
      421 ttgaccctta accccacact aaacctaagc agaagtgcaa gcagtaacct attatatagt
      481 ttttacaatt gtattcgcat ttgggtttgt ctataactgc atttttgtca gatagttcat
      541 acactcccag tgtttgctca tccaatttat gcaatactca tctatccact acagtc
//
LOCUS       KCLJ01002820             354 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 314582cal ultra-conserved element locus
            uce-2263, sequence.
ACCESSION   KCLJ01002820
VERSION     KCLJ01002820.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 354)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 354)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..354
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="314582cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>354
                     /note="ultra-conserved element locus uce-2263"
BASE COUNT          111 a           78 c           56 g          109 t
ORIGIN      
        1 tgtaaatatt tataagtggc tcatattaaa gtagttgtcg gctgcagcta cagtacttca
       61 ccttctgtca ctcccaggta tcaagggggc tgattcaatc actctcttgt cagactacct
      121 ttcttctcct gaatacccaa atccctaaac acaacaaaat ataaatgaat gaaaagtgct
      181 aatgatgcat cattaccaag aggtatcaag ttttttaagg tcctttgctg actaaatttt
      241 aaattagcac aattattcag agcattcccc aaggcaccat tcattatgct tagccactga
      301 gttgaggcac actgcaaacg aaatatatat tactgtccat agcatactgt ctgt
//
LOCUS       KCLJ01002821             552 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 314687cal ultra-conserved element locus
            uce-5230, sequence.
ACCESSION   KCLJ01002821
VERSION     KCLJ01002821.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 552)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 552)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..552
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="314687cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>552
                     /note="ultra-conserved element locus uce-5230"
BASE COUNT          110 a          141 c          152 g          149 t
ORIGIN      
        1 gaagagcatg ggttgcatcc tccatccctg ctgtcctgct gctgtgccct ccgtgtccat
       61 gctgggagcc ggtgtgagca gtcacttcaa gccacccatt ttgccctcca tcatgggatc
      121 tcctcgagtg tttgtgcagg cctgcagtga ggcagaaggg ctccacacct tggaggagca
      181 gcagggctgt gcgcggctgc ccgcagcagt gcggctggaa ggggggccgt tacactgtaa
      241 gagagtgagt agcaggtctc acagtgaacc ggtctctttt cctgctgtgt cacgccaccc
      301 cggatcgctc cagagtctgg tgcgtggagc aggaattgtg gttgcatttc aaggaaataa
      361 acaattctgg tgttggagat tatttatttc ctgtctgttt ctttagtgca caccttccct
      421 catagggtgt ctcagtaact ccatttgttt ttccagagtg ccaggtagaa cttcatcatt
      481 cgatctcagt ttggcagaaa ccctttagaa tggcaaagca gattccctgc aatagccttg
      541 atatggaagt ct
//
LOCUS       KCLJ01002822             530 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 314790cal ultra-conserved element locus
            uce-6865, sequence.
ACCESSION   KCLJ01002822
VERSION     KCLJ01002822.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 530)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 530)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..530
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="314790cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>530
                     /note="ultra-conserved element locus uce-6865"
BASE COUNT          142 a           89 c          123 g          176 t
ORIGIN      
        1 ttgtcaggca tgatgaaatt tctgaaaggc tcagaagtag ttgtgacttt tgcccatcct
       61 caagatgcaa ttcttaaaca aggtgcctct gagaatttta gcttttcaaa gcagtgggga
      121 atgtacaaat tgtgcttaat tacttgcctt gtttttttag acaggtgccc tagttcacag
      181 ttatcgggga acaggaggga tttttgaggt ttgctggaat gcagcaggag acaaagttgg
      241 agcaagtgct tcagatggtt cagtaagtgt tacttgactt ggttggtcaa taacaaacgt
      301 tttaaccaac aatggagaca aaatttcctt ctctagctga aggctgaatt gctcagctgt
      361 aacactgctg tggtaaggag aatatcaaaa acctcagaag gtatctccaa tttatatttt
      421 ctgttccttc tggggcttac tgtgtcagtg tgttcagtgt ggctggtttg aaaacaaatt
      481 tgtttttctt tctctgccca agatgctcag tgtaattatt ataatgcatg
//
LOCUS       KCLJ01002823             543 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 314900cal ultra-conserved element locus
            uce-2326, sequence.
ACCESSION   KCLJ01002823
VERSION     KCLJ01002823.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 543)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 543)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..543
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="314900cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>543
                     /note="ultra-conserved element locus uce-2326"
BASE COUNT          177 a           94 c          105 g          167 t
ORIGIN      
        1 tgtatcaact tcttctatca cgtgccacaa acaaaggcca tgtaaagtta gtgaaaggaa
       61 aaccctgagt tagcagactt ttaaataata aaaagctata gtagcatgta tacccatggg
      121 aaaggacacc ctcacacaag acagattagg gtacttgtaa tgctaatttg cacatgggat
      181 ggacatcaca cacacacaaa aattaatgtg gccccagtgt cccagagaat acatcgaagg
      241 tgctgtgagc cggctgctcc acttgcagtt tttatcactt ctgaattgca ttttaatagt
      301 acatttttct tttgttcaga catgaaagaa aattggcttt ctcaggggat tggatagctg
      361 agaagacaag gcttttgggg tttacccata tatgcacaga atttagttga gccagagcat
      421 tcataattta atatgaataa catgttttaa aattttcaga caaaatagag gaaagtagca
      481 ttttcctaaa atttctacat agaggttttg attttactgt ggatcagtta atctttgtct
      541 ttt
//
LOCUS       KCLJ01002824             421 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 315010cal ultra-conserved element locus
            uce-4905, sequence.
ACCESSION   KCLJ01002824
VERSION     KCLJ01002824.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 421)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 421)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..421
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="315010cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>421
                     /note="ultra-conserved element locus uce-4905"
BASE COUNT          145 a           74 c           67 g          135 t
ORIGIN      
        1 aattgaacaa tttccatgcc cacacagaga aatgcatacc aagaaacaag ttcatgttaa
       61 agtgtcactt cccacagaag aaatgtccca ttagtaagaa tggatcttaa aaactgattt
      121 ctttcaatag agctgtacac ttcagcttgt atacaaatta cacatcactg gttaaaaaga
      181 agatgcacat aatgtaggga atgaactgtt tcaacccttt ccttgctgct ataattttta
      241 tatctcattt tacctctgta attaagacag gtctggtagg tatttaaatt agcctggctt
      301 tcatctctat cacacattca tttcaaaact tttatgaata tttaatagag gttttataat
      361 tcatggtgat gtgatgaaca gccttttggc cgttaagtca attgacagaa agggaaaaaa
      421 a
//
LOCUS       KCLJ01002825             462 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 315113cal ultra-conserved element locus
            uce-6809, sequence.
ACCESSION   KCLJ01002825
VERSION     KCLJ01002825.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 462)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 462)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..462
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="315113cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>462
                     /note="ultra-conserved element locus uce-6809"
BASE COUNT          160 a           92 c           73 g          137 t
ORIGIN      
        1 ttccacttga gagaaacctg acgcaacctt agtgaacaga atggcaattt tcataaaacg
       61 cacagtcaaa ctggtaaagg ctaaattctc caatttttac ttcaatttga aataaaataa
      121 cgtgaaatac aatcattgtg ggtttcgaca tattttacag gtaccaacac caataagtaa
      181 tgtatatgaa gctggcaatt ccgaactgct tgtctttcat aggatttctt atggctattt
      241 acattttcac tcagtgaaaa tcaattacct tcccgcaata agcctcattt gctacctttg
      301 agtataatag aaacaccatt aggatgatga cattacccaa aagaagggca ccacacagtt
      361 ggtagacata aattaaggac cctttcacat atgcattaga aatactgctg cgactgaaat
      421 atgcataaaa tccctatcta ttagagctat tagcgcgatt tt
//
LOCUS       KCLJ01002826             843 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 315222cal ultra-conserved element locus
            uce-1667, sequence.
ACCESSION   KCLJ01002826
VERSION     KCLJ01002826.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 843)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 843)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..843
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="315222cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>843
                     /note="ultra-conserved element locus uce-1667"
BASE COUNT          268 a          148 c          140 g          287 t
ORIGIN      
        1 aaataatgtc tggccactgg gaaaacatat agttatttac aataaaaact gacatattaa
       61 ttatttcatt cagtcgacaa gtatcatcat aaagactggg cttatacagc atagcaggca
      121 tcacagcaaa aatcataaat actgtacttc tgtttagctt gacaatggca ggtaatagac
      181 tatcatttct gttcccttag ctactgtatc cttttctatc catcattctt tattgttatt
      241 atcacactta tttcagcact cttatatcag cagcatttag tgatattgca aaaacatggt
      301 tcagaaaggc tgaactttta attgttatga gaaataagtt agcttaatta ttctatgtaa
      361 gtagaaaaga tgtggtttgt tcttcttcct aagtccttcc ttcctaatcg caattcaaca
      421 ccctttttaa gcattgctat gtatgaactt catgctgcta gacaaataaa ttctttggaa
      481 aaatgcacat ttttatttgg aaataatgcc atctctttgt tagatttgca gcaatcctat
      541 tttgcctcta ctgtttttaa gtcgaaaatg aaaaattatt tagaagatgt ttgtgcatca
      601 tattgtgctg aatggtatgt aggtcagcat gctgcaccat agcagataag gcacagtgaa
      661 caagtgttct atgtacttac aagcaaatat cagtcataat agaagtagac agatctacaa
      721 gagcgttttg gcttaggaaa tgtttcttgt cattagcatt taaaaaaagc tatgagattc
      781 aggcctatca gcaccgattc acagcaaagc ctggcttgca caggttgtta tctgttcagt
      841 aca
//
LOCUS       KCLJ01002827             688 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 315334cal ultra-conserved element locus
            uce-802, sequence.
ACCESSION   KCLJ01002827
VERSION     KCLJ01002827.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 688)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 688)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..688
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="315334cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>688
                     /note="ultra-conserved element locus uce-802"
BASE COUNT          217 a          136 c          108 g          227 t
ORIGIN      
        1 taaagctttg gttttgattt ttcaaacttt tttctcaaac ccttgctcat ccataatctt
       61 taaaagctca gttgatgcca tgcagagtac aggcttattt ctttgctgaa ctaatctaga
      121 cactgtctag tgttgagtac agttgtctga ttcaaatctt ctgttacaaa gcagatgaca
      181 tctagctaga tgtcatgaga agagactaac aatgacaatt cacttatccc ttagaaagaa
      241 tcaattctcc cacaatgcat ctgtcagaga actctcactc agtaaaagca atttttctag
      301 ctgtctgaca ctgtaattgc tcttaaattt tcaatgaacg ttttacaaga actcccctga
      361 accatgatga aaaacttaac tttttctaaa aatgagaggc tgacaggatg aaagaggtct
      421 ttctctttaa agctttgctt gcttcagtag gaattctttc atatcatcaa caagctgttg
      481 aatagaggat agattacttt ccatttattt catcaatcag attaaaggct ctccttcaca
      541 atgcccttta aacaagagct gtttatgatg tcctcccagg ttctacttta atgtagtatt
      601 aaatcaccct gagcaaagag gcaggcaaag catataaata tgatgaatat ctgacaacat
      661 ttaagcattg catacattca ggtcattt
//
LOCUS       KCLJ01002828             601 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 315445cal ultra-conserved element locus
            uce-5278, sequence.
ACCESSION   KCLJ01002828
VERSION     KCLJ01002828.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 601)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 601)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..601
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="315445cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>601
                     /note="ultra-conserved element locus uce-5278"
BASE COUNT          207 a          119 c           88 g          187 t
ORIGIN      
        1 tgcttttcca aatcataaaa actatgcttt aaattagatg cattttaccg ttgctaaggt
       61 atgagcatga aaagacatgc catttttcac agctaaatgt atgcaggtgt taatgaactt
      121 atttaaaaaa tggttctgag cactgaaaag ggtaaacaca taataactct gctgtttaca
      181 atggtaaaca attgcaagtc ataaccacaa tattgttcct agttatttca gctataactt
      241 gcaaggcttc atagccagac aaaccagatg aaatatgttg ctgcaggtct gctctgatgg
      301 atccctctga aatatccaca ttattgcttt tattttatta tgtaccacac ttcataactg
      361 tacacagcag actacaataa aaactgcact acactccttt aagtacttat taaataggtc
      421 aaaaagttac cataacaaat aacttcctct actcagggtc cattaataac acatcttgtt
      481 gggattctaa aacaaacaag aagtgtctgt tatttgatgc tgctgcctaa cagtttgcac
      541 ttaaaatgct tatttgtcac agcactaccc agtctaaaat atcagcattg acacaaaacg
      601 t
//
LOCUS       KCLJ01002829             510 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 315555cal ultra-conserved element locus
            uce-6696, sequence.
ACCESSION   KCLJ01002829
VERSION     KCLJ01002829.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 510)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 510)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..510
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="315555cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>510
                     /note="ultra-conserved element locus uce-6696"
BASE COUNT          162 a           88 c           98 g          162 t
ORIGIN      
        1 agagccgaag catcgtttaa aatatggtac aaatgttgct tagcttaatt gattaagcca
       61 ctaaggtttt ctgcttttaa ataccatact tatacatttc aacaatcatt ttaatatata
      121 gtcaatggct ctttgtagcg ggaacaaaaa agaactatcc acagtttttc aatagacttt
      181 gagctgggga aagacaggtt aatcgagggt tgcatctaga aaacaaccaa gtgttgtatg
      241 tttgcactga atccaaatgt ctgcattttt ctaactaaat caaagggagt gttatttctt
      301 tttctgctca ctcatctgaa ggtaagtaaa ttttctctgg cgatcaaaag cctggtcagc
      361 aacaaagaca ccgcctgctt tttccaccgt cctggtgtgg caagttgagg aatttcaata
      421 actgtgacaa gggtgactga tttgtgaact agaaaaggtt tgaatgtcag aaaatttaca
      481 ttgctcctat cgaggactta aaataaattt
//
LOCUS       KCLJ01002830             827 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 315665cal ultra-conserved element locus
            uce-3394, sequence.
ACCESSION   KCLJ01002830
VERSION     KCLJ01002830.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 827)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 827)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..827
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="315665cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>827
                     /note="ultra-conserved element locus uce-3394"
BASE COUNT          258 a          143 c          159 g          267 t
ORIGIN      
        1 ctatctaata tgtctgccct aagggtctaa caaatacaat tgggaaaata taattaagat
       61 agaattataa aactaactgc aaaatatatt ttctttattt cctcatgata actggaaaga
      121 aaagcaacgg gtcgactgac attccttgtt taatgcagct tacttagtga ctggcataat
      181 gataagtgat ggtaatttac cttaaaaacc ttaatgagtg gatcattact atagagaaat
      241 gggaagaaaa ctttaatccc acagaggcag agctccatgg ttggctgtgc aataaccaga
      301 cagaactctg aatgagattc ccaagcttct gttccctaga taaaattttc tctcactcca
      361 cttttgcaaa ggtaatgagg aggtaatgag gcttgacttg aattttttca gcacttgatt
      421 cccttcattc cccagcaggt tcccatagga tagagtaaga tgttggattt atataaaagc
      481 tgtgctgata gataggtgga ggaggtgagc catgctattt ggttttggat tctgtctgta
      541 tgagaagggg ttcagataaa tttcaagttc tttcagcact gtcaattcac tctgatagtt
      601 tccacagaat aagacaattt gacgacatgc agaccttgtc agggttgttg actgtttatt
      661 ttgtcacttt actgatacta aacactgacc tttctgtgcc accttttctt cctcacattt
      721 ttcactaact taatgacaca tctgagtaaa taataaaatc caaaaaggta ggcagaaatg
      781 ttgtattaga tcattagctt aatttgagct gaaaggtctt tgttgta
//
LOCUS       KCLJ01002831             613 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 315776cal ultra-conserved element locus
            uce-7331, sequence.
ACCESSION   KCLJ01002831
VERSION     KCLJ01002831.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 613)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 613)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..613
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="315776cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>613
                     /note="ultra-conserved element locus uce-7331"
BASE COUNT          204 a          119 c           98 g          192 t
ORIGIN      
        1 atgtatttga tggaaacaag agaaatcctt tgctgttatt acattgcatg atctaaatat
       61 attctttatt ttatcatccc caaacaagac atttttgtgt tttacgttta cttttagttc
      121 tctgagttgg gttatcaacc aaaccagaga atatcatgaa ttgtccttag tctttcacag
      181 taaacttaaa gtctaaacaa taaaaacaga taaatagagg aaatgtcaaa ctgaattctg
      241 ggtaatgatc agatcagcat gcttttatac aatttccatc actttgaatt ttaaatcacc
      301 ttttaaaggg cactaaagca ttcttgcaaa ttagtctgca ctccaattaa tgcacccaac
      361 atgacaataa gaccagtttc agcttggcta agcagaccag tcaaccagga ggatgtgact
      421 tgaggacttg gagagcttgt gcctccacct tttttccctc tctcttcaca gcagcttagg
      481 tccaattagg ccagttaatc tgctaaaacc attggaaaag aaggatttct ctaataaaga
      541 tgaagcatag tctgagagga catataaatg aagtctactc ttttcaaaag acacaaaatt
      601 ccaagatttc cct
//
LOCUS       KCLJ01002832             532 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 315884cal ultra-conserved element locus
            uce-793, sequence.
ACCESSION   KCLJ01002832
VERSION     KCLJ01002832.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 532)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 532)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..532
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="315884cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>532
                     /note="ultra-conserved element locus uce-793"
BASE COUNT          177 a          122 c          115 g          118 t
ORIGIN      
        1 caagctaaac actaaacatc aacttgttct tacagggagg attcaaaccc taaatataat
       61 aaatggggga ttacgggttt ggagtgttag tgcaaaacaa cactggaaat aagtcagctt
      121 ttccagtcag atttcatcca catctgcagc ctccacacca tcatcaaaat gcaaccccca
      181 gccctgctgc ttttataaat aataacacag ctgccaatgg cagtagtgct gggtcagctt
      241 ggctctttcc tgctccagct gcccataata ttcaggatga gattctgggg tcagaaaaat
      301 ctaaaactca gcaacaggaa aagcaagagt ccctagaaaa acagcagctt tcccctggtc
      361 aaagtcagga agcaggcatg ctctctgaac ccgagaaagc taaaactgaa gaaaaccagg
      421 gcgataattc ttcagagaat ggcaatggga aggagaaaat aagaatagaa tcgccggttt
      481 taacaggatt tgattaccaa gaggcttcgg ggctcggtac ttcgacacag cc
//
LOCUS       KCLJ01002833             745 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 315994cal ultra-conserved element locus
            uce-6211, sequence.
ACCESSION   KCLJ01002833
VERSION     KCLJ01002833.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 745)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 745)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..745
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="315994cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>745
                     /note="ultra-conserved element locus uce-6211"
BASE COUNT          232 a          128 c          134 g          251 t
ORIGIN      
        1 tttttcatta tatactttgg ttggtactta tttaaatgtg ttaaatgagc acaagtgcta
       61 aactggaaaa atactccttc acattacaga gtaataagac tgtagcatgc actgtttgtg
      121 agcatcacaa ttatatttca taaactgtac agttgtaatc atggagttga ttttttatta
      181 taatttttca cccatttcag ttgaagtaac attctcacag aatacaggtt ttgtagtgat
      241 atgatgtttc ctagctgtag gcttggcctc tcccttctgc tggctgtaat ttactttttg
      301 gtctctgtcg ccttgagctt gcctcctgac tagtttgttg aatgatgtgc taatccatta
      361 tatttttcag acaagtgtat cgaccagtat aaacagactg gagggcacaa acctaaatga
      421 aagctatact tccttgaatc atttaaaaag ctcctgcagt ggtggcagta caaaataact
      481 tttctctgta cattaaataa agagggaaat ttcaataaat aaaattaaga ttgtgaggaa
      541 tgtgaacaca gggcgcgttt catatgttta gttgtaggaa gaagagacag ataatgttag
      601 tcaggcactt gagaatgtgc ttctagatga taaatttgaa actgagcccc aagccctgca
      661 ttacttgcca tttcccattg tccagacact ctcacaacac ataagtcatg tactatattg
      721 aaacattttt atacaaataa agaat
//
LOCUS       KCLJ01002834             585 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 316105cal ultra-conserved element locus
            uce-541, sequence.
ACCESSION   KCLJ01002834
VERSION     KCLJ01002834.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 585)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 585)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..585
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="316105cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>585
                     /note="ultra-conserved element locus uce-541"
BASE COUNT          193 a          121 c          117 g          154 t
ORIGIN      
        1 agagctgcat tatagaatgg ttatttttta aaagatcctt tattttttca tgagaaaaat
       61 gatcaaactg ataagccaag agggaaaagt tggagcagct gaagtccttt ttggaaaatt
      121 tcaggtaaat actatatttg gttggatctg gattttccag cgtccaagtg cagtttgtga
      181 agtttttagg aaacatttca cttacagaat acgatccata aatgaccccc ttcaccaacg
      241 tggaacacca gaagtcttgg gcagcattaa atccaaacat aaccagcaga taggtggaaa
      301 atatataaat cagcaaatta cgaacagcct tcatcctatg tcatttggcc tgcaggagat
      361 gaaacgaaat aaaaatgcaa gtagaattct tcacgcatag aaaaccaaac tccttccaat
      421 attcgagcca gctgttttca agcttgcagt tagagcccct ttcagaaaga agggcaggta
      481 atttttattt tataacgcaa gggccggggt tgctgctgtg tgcacagcgc catcacgtgg
      541 ccatcgccac agacacggct cccacagaca aaactcaaca tccat
//
LOCUS       KCLJ01002835             363 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 316216cal ultra-conserved element locus
            uce-764, sequence.
ACCESSION   KCLJ01002835
VERSION     KCLJ01002835.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 363)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 363)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..363
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="316216cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>363
                     /note="ultra-conserved element locus uce-764"
BASE COUNT          111 a           73 c           73 g          106 t
ORIGIN      
        1 ttttctggga aattgggtgc agccacacag tgaaatactt gggtcacttg gactggagtc
       61 ttccacacac aacgactttt aacaggcaac atctgacagt accaaagccc tttgcagccc
      121 tgggtgaaat tatgataaca agagaaaaaa gctattactg ccaccatgct ttcattatgc
      181 aaatgatatt aagataggct gtgcagatcg cctgtggcta tgctataatc tccatgcagt
      241 gattataatg tgtcaaactt agtcattttg attatgacat gttaattaca tgccatcctc
      301 atgcagacat gaatattact cgcagtcaaa caaaacacaa attgggggca ttggttgttg
      361 ttt
//
LOCUS       KCLJ01002836             611 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 316321cal ultra-conserved element locus
            uce-686, sequence.
ACCESSION   KCLJ01002836
VERSION     KCLJ01002836.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 611)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 611)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..611
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="316321cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>611
                     /note="ultra-conserved element locus uce-686"
BASE COUNT          217 a          118 c          134 g          142 t
ORIGIN      
        1 ctggttagaa ataataagca aagtgatggt gcagttatag ctccattggg agctgcccag
       61 caacaagaag cacttaggac tggcgacaga gacaaaataa aatttttgta cttagcacca
      121 gtatccacct ggatgaggca gcaaagatgt gcaaataaca aaagccatca gaataacaaa
      181 taacggcaga cagtcactct ggacctattc tgaaacaaca gaatacactt taaaaagcag
      241 taaaaccaat aaaaatccag tcatcttgaa aaaggagagt ctttgctgca ataaaggcag
      301 tcaataaaga agctctctca tttaaacatc aaatgcacat tgttttgcaa cacctgttat
      361 tcaggcataa tagctttctt aacctgtcaa agtgtttaag ctgaggaaaa gaaatgggcc
      421 tccagctgtg cactttggtg gagaaagtct gcgcgaagcg atattagttt aatgaaatgt
      481 gtacagattg taattgtggt aataagaggg caattcccag aggggcagta ggaaggcact
      541 gagtgcagcc aagcagaaaa cagaagctgc agactgatcc tgtgtatgga ccctcacttc
      601 ctactctaca g
//
LOCUS       KCLJ01002837             472 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 316434cal ultra-conserved element locus
            uce-6736, sequence.
ACCESSION   KCLJ01002837
VERSION     KCLJ01002837.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 472)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 472)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..472
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="316434cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>472
                     /note="ultra-conserved element locus uce-6736"
BASE COUNT          168 a           81 c           81 g          142 t
ORIGIN      
        1 aattcgacac ctgttaattc aagcgttgcc atcataaaca tagcttgagc aaagtagctg
       61 gttatgatat caaataaagt cagcataaaa tcacaataaa aatccaggag attaagaaaa
      121 cctagttgaa atcagtgatt tagattggta gtgcactgag caaaagcaaa caagattact
      181 ttttctcagc gatatatttc aaaatgtctt ttttaagcct ttcttcaagg agcgatttga
      241 aatatttact accagacagt acctaatttt aggttttaag tgctttaaca gctctatgaa
      301 atatgatcag cagctgcaat atagaagtat gctgaataaa tgctccttat gagacctgct
      361 ttaccctgag ttcataaaat ccctactttc aagaaggaaa aagataacac agtgaatagc
      421 tgtgtcctag agcgttcaac agaaattcca ggaatatttt ctgtggtaac tt
//
LOCUS       KCLJ01002838             562 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 316538cal ultra-conserved element locus
            uce-211, sequence.
ACCESSION   KCLJ01002838
VERSION     KCLJ01002838.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 562)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 562)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..562
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="316538cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>562
                     /note="ultra-conserved element locus uce-211"
BASE COUNT          182 a           80 c           97 g          203 t
ORIGIN      
        1 tatctgagac cttgtgaaac tctctcctga gataagtgca aactacatgt gtacatatac
       61 ttctttcttg tgtttgattt actagcagaa ttgagaacaa agtaatagcc gtgcatattg
      121 ttgtttaatc cctcttgtca aactgcagtt tcattgctgg ataaaaaaag attcattgta
      181 agctttatct ggtggtgttg atgaatagtt gcaattaata cattccctta attagtctga
      241 tatgcagaag atgcacctgg caggtcattt taatactaca attgatttat tgctgctaga
      301 aataatttta ccagctatct tcagagagca caattagaga ggatttcata atgcattttc
      361 actgaggaat aaacataaaa ggtctatgta attcagaaca aagcagctat aatgtactaa
      421 tggtttatgg attttattaa tattcaacta acattagagt cagttttaga gaacagcaac
      481 ttattttcta tatgaagtat ctgtttttag tatgagagtt ttttatttca ataaatccat
      541 ggtattttaa atcagatatg gg
//
LOCUS       KCLJ01002839             702 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 316645cal ultra-conserved element locus
            uce-5228, sequence.
ACCESSION   KCLJ01002839
VERSION     KCLJ01002839.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 702)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 702)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..702
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="316645cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>702
                     /note="ultra-conserved element locus uce-5228"
BASE COUNT          237 a          156 c          139 g          170 t
ORIGIN      
        1 aagcctcaac acaaaccagc agctaaatca agagccaaag gaaggaacct ggtggcaatt
       61 ccatccaaga gaaatcactg aaacaaaccc attttgctca gaacagaaat ctcaaacatg
      121 gcaggttcat taggagtcat ccatcactgc gtgcccactt ccatagcctg actgatactg
      181 agaagatgcc agtagcagag tcacagcaat ggcattgaca gggggatttc atggaggata
      241 gtccaaaccg aaacccgata aaaatggaga aaaataaaaa ggcaccaata taagccacaa
      301 catttatgaa tacaatatat tttaactctc tacatggagg aagccaacct gctccttttt
      361 gatcttcttc tttggcacaa cttcagtgga tttctcagac tcggagcggg ttcgaatcga
      421 tcttctctgt tgcttctttt ctacagaacc tgaagaagga aaaaggtttc cattatatga
      481 ctccttgtat ttctgaggta cagcaagatg tgcaacacca aaccaagaaa aggaacgaaa
      541 ccaagacttt gtcctctttt gaatgtttta tttttaaatt cagttccaag ctattgacca
      601 gctggtgctg tggctgcaga cacacattct gattccagag atcagcttca gaaaacagac
      661 aacagactgg aacaaaaggc tggaattcag attagggcaa ac
//
LOCUS       KCLJ01002840             675 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 316756cal ultra-conserved element locus
            uce-1060, sequence.
ACCESSION   KCLJ01002840
VERSION     KCLJ01002840.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 675)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 675)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..675
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="316756cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>675
                     /note="ultra-conserved element locus uce-1060"
BASE COUNT          202 a          106 c          125 g          242 t
ORIGIN      
        1 agcagcagca ggagcatctc gtcagttttg ctttgaactt ggatggcact gccattttaa
       61 atgtgtgcat gtgggtaaat ttctcttaga attgcagaaa gctgaaaatg ataacttttc
      121 agttgtaaaa tttctgtaaa atgccttttt ttgagtatca gtaacaagct tctccttttt
      181 tgacaggctg gtgaaaattg cccctcaata ttatgacatg agcaattttc cacagtgcga
      241 agcaaagaga cagttggatc gcatcattgc caaacttcag tccaaggaat actcacagta
      301 ctgaatttat gctttgaact gaagttattc agaggacagc tttaagagat gaaaggattc
      361 aaagttcaag ttgtgctctt cactttggtt caataatggc ctttatttga aagcttttta
      421 atttttcttt acagtaaata ttccattctg atttcataaa ttaaacattt atgcctccct
      481 tttgtgttga cactgtagct catactggaa aagctaatca atgttttgca gtttattgaa
      541 agtagttcta tatataacaa tgttataagc atttctttag aaatggttga aaatgcttct
      601 aaaaatgtga ttatcgacca tggtatgcat gatcgttgta attgttgaca ttccttttag
      661 aagttgtgaa atgtt
//
LOCUS       KCLJ01002841             344 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 316865cal ultra-conserved element locus
            uce-1649, sequence.
ACCESSION   KCLJ01002841
VERSION     KCLJ01002841.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 344)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 344)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..344
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="316865cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>344
                     /note="ultra-conserved element locus uce-1649"
BASE COUNT           87 a           40 c           81 g          136 t
ORIGIN      
        1 ttttgcttat ttataggtgc tgtattttat tatctgattg ttaggaaggg atgaaagggg
       61 gcaaatattc tttagaggga tagactgccg gcagtattgg gtataattta caagatgtag
      121 ttgtcatact gtatattatt gattgaagac ttttttgacc gtattgtgta tcattgaact
      181 tttgtcttag gtcagcatct ttttgatgac actttaatgg tgcattcatt acttcttaag
      241 tttaattaat attacttttt gggggaggga gggatggggg agaggagttc cgactttttc
      301 ccaatattac acctcagtgt gcttgtatta attcattagt agga
//
LOCUS       KCLJ01002842             489 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 316963cal ultra-conserved element locus
            uce-1690, sequence.
ACCESSION   KCLJ01002842
VERSION     KCLJ01002842.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 489)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 489)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..489
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="316963cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>489
                     /note="ultra-conserved element locus uce-1690"
BASE COUNT          157 a           75 c           93 g          164 t
ORIGIN      
        1 aaattttatt taaagttcac agcagtctat gcagctagtg cagttttagg ttaagcatat
       61 tttatccata attgctatat ttggttctca agttattatt gtagttcctt ggggtacatt
      121 taaatccacc ttattgtaat agattatgga atatagtggc taatgtgtct aatgtaaaat
      181 aaatgactat aatgatttat gatccagcac ttcagtttta ttgaacataa ggatcattgt
      241 actaaaatgg atggtgtatt gctggtttag cataaaatac tgaataacat attcaaggaa
      301 atgaatggat tggccagttc ataatattct gccccttcag ctgagaggtc tttaataagc
      361 aagagtgtca ttacacttga aaatgtatgt gtaggtaatc cattacccag aacaatgaca
      421 gtgatcggat gaagctctta ttaaagaagg gccctcctta cagggaaata cagagcactt
      481 ccctgcctg
//
LOCUS       KCLJ01002843             793 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 317072cal ultra-conserved element locus
            uce-3861, sequence.
ACCESSION   KCLJ01002843
VERSION     KCLJ01002843.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 793)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 793)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..793
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="317072cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>793
                     /note="ultra-conserved element locus uce-3861"
BASE COUNT          297 a          179 c          146 g          171 t
ORIGIN      
        1 aacacaccca tgagcagtca taccacttgt tttgtacaac tgctgttcag caaatatcaa
       61 aacaaaaaaa agtccactca aaaagctaag gatgcttaaa atgtcttccg tggatcaatt
      121 catccatact acagcaaacg cactcgttct cctcagaaaa tacatgaata aatgttactc
      181 cttaaaatgg ataaagcaca cgaagcacca tctgtcaatc ctcagaacag aacaacgaca
      241 cacactcact accaatggac tgctagaagg gctgcagttg ggaggcactg ttccctctag
      301 attggtgtcc agcgacggca tccttacctt cggtgggaat tcctgttgct atttacgtgg
      361 ccccggcctg tgcagcctgg tgtaggacac ttaagaacat tttcatgcat ggcaagaact
      421 tgacaaggag agtaagagaa aacagcagag tatgaaaaca aaaaaaaaaa tcaaatccca
      481 gtatatatga aaccatttta aaacaaagca ggattcatta acaaccagca ttcctcaaaa
      541 tacacgtgac acacatagcc aataaagcct gaggaaacta agtattgtga cattaacaca
      601 gggcaacagt gaaagttatg gaggttacag aacctataaa caaatgcatc tctggtgcaa
      661 cagtgaagca gaagacgccc aacatcttct tcatacaaaa ccactgggaa aagatcagct
      721 caacagtaaa gagtgagcta gcaaccatac aaaacaaaat tacagactgg aaaactcttt
      781 caggaaatgt atg
//
LOCUS       KCLJ01002844             891 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 317180cal ultra-conserved element locus
            uce-4642, sequence.
ACCESSION   KCLJ01002844
VERSION     KCLJ01002844.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 891)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 891)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..891
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="317180cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>891
                     /note="ultra-conserved element locus uce-4642"
BASE COUNT          240 a          201 c          217 g          233 t
ORIGIN      
        1 aggctgtctt gacaaaagcc ttaaggagca atgttaaatc aatttcagat accttgttta
       61 tgttatttca cctcagaggg tcttataagg gcttgaagga caccttcagc agtagtaatg
      121 gctggcaggg aagtagcagc atatgtcccc tttcctgccc tgccttttat ttggtcaagg
      181 aagtcacttg cactttcttt catcgttcct cctcctcatc tccctccccc gtgtcctgac
      241 tccctgcccg aattcaagag cttgaaggtc tgctggtggt agccgtggtg gctgcaggga
      301 ggagggaaaa aaagcagagg gagtaaaata agtgtcaagg aattcattgt ctgttctcca
      361 cctgttgtta ttctggtccc aatcaacctg ctagccaggc tggagccagt ggccatctgg
      421 aaacactgct ctgtttataa acttggcatg aagcagcact cccgggccct gacctcccac
      481 acaaatctgg aaacaattag agcaagatga taggcaggca ggcagggaga gaaggggaaa
      541 gagcgcgtga gagaggaggc tgcagagaag gggaaaaaca gacagactga aggggagcat
      601 ggagaaggtg gcaaatgttt ctgtgatgca aatatttatg cccaccttaa gtgaccgcta
      661 gctcattaat tattgccctt gccaaaacag cttttttttc catgaaggct aaggcatgcc
      721 tctttacctc ccccagcaac acaggttttc caaattatat tgtaggtttt acactgctaa
      781 aagtttgcct agatgaatct taggaaattt agttaggtcc gcacgctcag acccataaaa
      841 gttctgtact tggtggtatt gaaaactgga gtccaaatat tgcagctcct a
//
LOCUS       KCLJ01002845             752 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 317269cal ultra-conserved element locus
            uce-6265, sequence.
ACCESSION   KCLJ01002845
VERSION     KCLJ01002845.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 752)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 752)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..752
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="317269cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>752
                     /note="ultra-conserved element locus uce-6265"
BASE COUNT          253 a          126 c          134 g          239 t
ORIGIN      
        1 ttaaagtgga cacaatctta ctcttaagag agttatgtca ttaaaatgaa ggtctccaca
       61 aagacatgat tccagctttc acaaagctga aatgttgtcc agcagaagtc tttatggaaa
      121 gctgaagtaa aaactaactc agagacctgc tcttgaaatg ccatgttcaa gagaacataa
      181 cggagcactg agaaaaaatg acctcacaaa ctgtctacac agcaccttta ttcctctgta
      241 cttagattga ctttctcgta ctaaaatcat tttccgtttt aaccagttaa acatgcctct
      301 tctacagttc catttttgat agttaaagtt ggataataca gtatttgcaa agagcatgtt
      361 tggtcatctg tggcctatgt ctcatctgat acaccattta gcaccagaaa gcaaattaaa
      421 gagaaaacaa aagtaacact tgtttgaaag agatcattaa atgtattttg aaaagcctaa
      481 agttatatat ttaacagttt ttatatgttg tatatttgta gaaaatccta tttaacaatt
      541 aacgtgataa ctctgacagt catgaaaagt ggttcagagt taagttgtgt tttattactt
      601 cagttgtctc tgaagtgact ggtgtcgttt gctttcttcc attgggacat tctggatgta
      661 aagcatgacc agagaggact gtgtagaaaa agcaaagaat aatgttgttt atattacata
      721 aatgcattca accattgcac tgttggaagg ca
//
LOCUS       KCLJ01002846             580 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 317378cal ultra-conserved element locus
            uce-3788, sequence.
ACCESSION   KCLJ01002846
VERSION     KCLJ01002846.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 580)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 580)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..580
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="317378cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>580
                     /note="ultra-conserved element locus uce-3788"
BASE COUNT          193 a           88 c          103 g          196 t
ORIGIN      
        1 ttacacatag ttaaaagaag ttcatctcca aaatttgagg ttttattagt gatcttattg
       61 tgtaagttaa catggaaaat attggaaagg attaattgag aatgtcaagt cttttcctct
      121 gagaataaat tctttttgac tagaacagga gacagttaac ttctgaaaag catcaagact
      181 gatgattttg tctatatagc attgacctgg aagctcagcc attcagacta ataaatcagg
      241 caatttatat ttaatcatta actaactccc gagctgaaca gctgttcaaa attagaaatg
      301 ggtcaccccg gccaggatga cattacaggc aatctataat gcattagaat aaaattatag
      361 tgatttttaa ctgtctggaa atttattaca ctgcatgttc caactcttaa acccttgtta
      421 gccaatgtca gtagtgattt atggtgcttg gctggtatgg taaaattact gaagatttaa
      481 atagacaatc attctatgtt tagcaaatct tcaaatttca aagctatttt ggagaatgag
      541 gtgggtattc tttattgttt atgacttacc tcagtgacaa
//
LOCUS       KCLJ01002847             775 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 317491cal ultra-conserved element locus
            uce-1565, sequence.
ACCESSION   KCLJ01002847
VERSION     KCLJ01002847.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 775)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 775)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..775
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="317491cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>775
                     /note="ultra-conserved element locus uce-1565"
BASE COUNT          236 a          178 c          125 g          236 t
ORIGIN      
        1 ggtcacagct ctgagccagc catataaata cagtatgatt agtaatgtct aagagtacat
       61 tcatcactta attacttttt ccattatgcc tgcacatttt atctaatcag aaagtaagcc
      121 tgcttgcttt caccttgcag ggttaaacta ataagaccgt gctgcttcaa accacctcaa
      181 aattacatat aacatgcgat ctcgattcag acactgtcca ttaattttgc aacatatttg
      241 gcaaatgaat tttaaatgca agggggtttt gaggcggcat cccctccctc ccctagctgg
      301 ccggttaatt agcatacctc ccatgctcgt tatgaagtca tgggctaatc tgacatactt
      361 ggttattaac gtgctcctga ctgaatcaat ctggcaataa atttccctac cactcttcct
      421 aacagctctc cctttatatt ccgatagttc catgacaata attgattgtg attcactcct
      481 gaaatgtacc aatcccgggg aaatggcatg ggctttcatt catcaatttc agcttcataa
      541 gtggaaattt atacaaggta tgcagatgtt tagagtttgg ggtaatcaat aaggagtaaa
      601 taaagattgg cattcactat actccacttg acaagctcca gcctaatgtt tgtcaagcaa
      661 attaaacaca ctcagacttt tcacctgctc ctacaacagc accacatatg gctctgaagt
      721 taaaaataag aaaatgtgca tacattatca tacataatgt acaactccct ccatt
//
LOCUS       KCLJ01002848             560 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 317601cal ultra-conserved element locus
            uce-7994, sequence.
ACCESSION   KCLJ01002848
VERSION     KCLJ01002848.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 560)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 560)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..560
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="317601cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>560
                     /note="ultra-conserved element locus uce-7994"
BASE COUNT          144 a          104 c          136 g          176 t
ORIGIN      
        1 aattactctg gagaagagtg tgcgagagga cataaaattt tccagttttg cctgctgaat
       61 gattgtctgc aggtctttca ttaaggtaat tttctctagc attgccacag tctttacctg
      121 ctttccagag gtgcattact gccaagcacc cagctgtcct gcagctggac tgactcaggt
      181 gtggtttgca gctcggcggg caaagcagcc ggcggggccg gactctgatt cctcctattt
      241 gtcagtgagt ttctgttaag tgaggtgatg gatgggtgat gctgtgctga atgttgcttg
      301 tgagaaggtg gcaaaggctg cagggtcgac tggccttggt tatttggagg ttgctctaag
      361 aagaaagaag ttcgttaatc ttggcatttg ctacaaccaa agcagaatga gaaattcaat
      421 ataatcctat catctaatat atttgcatat tattctatta gcagacattc agtgacattc
      481 tgtaagagca agtttaccct tgatacacca agttctaatt aatacacaac agatggtaaa
      541 attgcttttg gttttaattt
//
LOCUS       KCLJ01002849             533 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 317708cal ultra-conserved element locus
            uce-5165, sequence.
ACCESSION   KCLJ01002849
VERSION     KCLJ01002849.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 533)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 533)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..533
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="317708cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>533
                     /note="ultra-conserved element locus uce-5165"
BASE COUNT          168 a          110 c          106 g          149 t
ORIGIN      
        1 ttcccccagc aaaaattatc atcttttata catgctttaa aagggtgggg gctagggaag
       61 caaagcagga tctggtatta gtccttttag tcgtcaggaa attacaaaat gtacacttgc
      121 ggagtaagca attttcgcag tctgctggca catccatctt tttaatgagc cttgtttata
      181 acctgacgcc atgtttctag tcacctaccc tgtttacatc tttggcccct ttaattaaga
      241 gaagaaccag ttaaaagaaa gtaagaagaa atattaatat gatctgatta attcagctag
      301 cgggaggtta tggggtacca aggttattat aacctataaa ggcaacatga gcaaagctgt
      361 gttcatttgt aattttatta ggcagagcaa attagtgagc ccacatggca atgacaaaag
      421 accccttcct attctctctt accccccacc gaaagggcca ggcgcctaaa gttaggctcc
      481 atattaggca aatgagagct gataaatctc agccaacaac taatgagaat ctc
//
LOCUS       KCLJ01002850             676 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 317816cal ultra-conserved element locus
            uce-891, sequence.
ACCESSION   KCLJ01002850
VERSION     KCLJ01002850.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 676)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 676)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..676
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="317816cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>676
                     /note="ultra-conserved element locus uce-891"
BASE COUNT          196 a          126 c          148 g          206 t
ORIGIN      
        1 ttttggacaa tgaaaattgt gtttgttacc atgtagtcat ggatgtattg ttttaatggg
       61 gttacagaat aggagaaaag tagcaagaaa agacgagttt cattgaagaa tttattttaa
      121 ctgtatacat atgttttgcg tggtctaagc tgtccacaca aatatgaaat gattaaatgg
      181 agcagcaaca agcagaaagt attgcctggt gagagataat actgtagctc tctaattggc
      241 tctctaccag cattcagtgt gactgatttc agctgtagca ttaccagtct tcttccacca
      301 gcactattat ctcagagtga cacttccatt actctgaacg gagaaagatg aacgtcacct
      361 gtcaggggct ggttaattgt gttgctagat gtatgttacc agggcgcagg ttggacattt
      421 atgaacataa ctgcttcctc tgatgtccac catccttcaa cgatcaatac agctcttaca
      481 gtaagcgcat aattgagcga aggcacttac caccgagggg ctgaagatga gcccgttgtg
      541 caattttcat tgtccataca ttcagcacaa atgagctgat atctgccctt tattgtgtgt
      601 tgctttgtgg aaatagaaac taatgtgcca ctttcatttg tttcctagat aaatggccaa
      661 gatgtccaga ataggg
//
LOCUS       KCLJ01002851             383 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 317925cal ultra-conserved element locus
            uce-3425, sequence.
ACCESSION   KCLJ01002851
VERSION     KCLJ01002851.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 383)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 383)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..383
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="317925cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>383
                     /note="ultra-conserved element locus uce-3425"
BASE COUNT          118 a           74 c           83 g          108 t
ORIGIN      
        1 taacgatttg ctaggcaatg tgcaattctc gccttttaat atccaagaag aaagagttct
       61 ttataataat ttggctcaaa tgtctacaca cattgctcca gcgtctgtag cagcatgtgt
      121 ttctaggatt gttctggaag agaaaatgca gaaacagcag ggagcagaag ataaacaggc
      181 aattcgtgac tcattaaaac aagcattggt agccaacatt gtggagtgta tgaaggcccc
      241 agatccaact cgcctataaa ctttttttac cagctggact tagcatctgt cagagtttgg
      301 aaggagagat aatctggtac aaatgatttc agtgtgtcgc atttattaac ctgccacctt
      361 acataacgct gctgattggg aac
//
LOCUS       KCLJ01002852             639 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 318029cal ultra-conserved element locus
            uce-6910, sequence.
ACCESSION   KCLJ01002852
VERSION     KCLJ01002852.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 639)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 639)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..639
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="318029cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>639
                     /note="ultra-conserved element locus uce-6910"
BASE COUNT          192 a          123 c          141 g          183 t
ORIGIN      
        1 ggagtttgaa ttttttaact cctaatcaaa ataaggatca agagttcatt aaaatgcagg
       61 aataaaagtg tgataatcct acacaataag tgactgcaaa gagggaagtg acgagttaac
      121 aggaggcact ctgaatattt ggaagacaac cttcctttaa atgagacact gctggtaacg
      181 gtaatgggga atttgcaatg aagggaagga catgcaatta taatctggct gggccccact
      241 ggacaaaaag tgatttactt gaaagctgcc tttgcactca gtaaatgttc ctgttatggg
      301 ctgctcagcc tgtgacagct ttccagatgt caatcaaatt atcatctatt tacagttgat
      361 ttggtagtgt catttgcaat attccctacg tttctgatga aattggaagc acagaatttt
      421 ctccagtttg ccctggcact cgagtgggca aactgctctt tgcaaatgtc atgtgtccgc
      481 ttatcagcac tctaaggaga gcgatcttcc attcggctga gtgaatcgct accagatgca
      541 aatctctcaa tcgtcaaggg aagagtatgg caaattttaa tgtactttga aaaactcagt
      601 ttacatcagt gctcaaggtg cggctttacc caggctaac
//
LOCUS       KCLJ01002853             684 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 318137cal ultra-conserved element locus
            uce-1769, sequence.
ACCESSION   KCLJ01002853
VERSION     KCLJ01002853.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 684)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 684)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..684
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="318137cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>684
                     /note="ultra-conserved element locus uce-1769"
BASE COUNT          212 a          114 c          124 g          234 t
ORIGIN      
        1 tctgagtgta gttgagtttt atagatctat ttatgagatc caatactgta atgatgtaat
       61 tttacttgtc taataaatgt agctgtacaa cgaaggatag caaacatttc cattgtgacc
      121 aaaatccttt aaactgcagc cactttgatc ttagagctca tgctatttaa taaatgctgg
      181 ccattcttct aacaatcaca attatttaaa gggttttcaa aagggataga gcaaatcaaa
      241 taaaacaatt actgttgtat ctcattctga agttaagtgt attttttatg tgagtcttgt
      301 ttagtgtctc ctcccagttt tcatccatta tcacaataat tgagtttgta gctggaatta
      361 aatttatcaa attgtgttat cctcttttga aattggatag gtatcctggc agtgggagct
      421 agaagttaat ctgctttgct aaagcctcca gtggcacagc ggcaacagga ttgagaaggc
      481 tcaaacattt tcctgtcacc ctggacacga tgtaatttct cctcaatccc ttgtgcaaat
      541 aatgacattt gaatcgagca ttaacaggct taattacttt aaaattgtca ttttaattta
      601 cactgatata gtattgatca tacaagcaga gattaagctg ttcagtggag cagatgatgg
      661 ggaattaaac attaaagggt cctc
//
LOCUS       KCLJ01002854             569 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 318244cal ultra-conserved element locus
            uce-2973, sequence.
ACCESSION   KCLJ01002854
VERSION     KCLJ01002854.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 569)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 569)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..569
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="318244cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>569
                     /note="ultra-conserved element locus uce-2973"
BASE COUNT          180 a          118 c          118 g          153 t
ORIGIN      
        1 gcccttttta taagcaataa gaatttaata actgaaggca actctatagt aatatttata
       61 tgggtcaagt ggcttaaaag tatgcaataa atgtaaagtt atgaaccaca ttgccccttt
      121 ttaaataatg cagctagcac caagatatta tgtttcatat tctggtttta gcctaggctt
      181 taggagtaca ccagacatga aaagttatac tgatcccata ataaagtcac tgcctgctta
      241 atatggtgtg ttatgtagag ctccagatct tagaccacag caagaacgtc ccagatgata
      301 tcaacaaaac cttcgctttc tcattagcaa tcagcaaatt ctcctggtgg ctgctggttt
      361 caaataaggg caagtgcctc aatgccgagt gggaagccca acaggataat agaaataatg
      421 cagtctaatc agcggcaaga acacgagacc tgccagagca ggcactgctg ggctgggtga
      481 cttttaacag ccctcccagt cctgaggagc aggatccatt cgtgcatccc caccatcagg
      541 ggtttgagga tgtttgtata aaaattaaa
//
LOCUS       KCLJ01002855             688 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 318345cal ultra-conserved element locus
            uce-2516, sequence.
ACCESSION   KCLJ01002855
VERSION     KCLJ01002855.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 688)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 688)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..688
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="318345cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>688
                     /note="ultra-conserved element locus uce-2516"
BASE COUNT          184 a          137 c          143 g          224 t
ORIGIN      
        1 ctggtcttgg gtgctcgcag cctcggtgac aggccactct cagctgctcc tggtccccaa
       61 taattagcct gctatggcag ctacctcttg tggttttgcc tgtgagagac atttgacaca
      121 gcagacatca gagggatttt tcaggaggct cttgtggcgt ccgaatggct cttaattaac
      181 cacttaggta tcctcgttca ctctcctgct tggcactttc caaatggtag gggttgcact
      241 gtggatctaa acaccgggga agcatgctat caaaagatct tgtaaatgaa ggcttgtgta
      301 aattattttt aatgattccc tcctggcaca tcattatgtt tgtagttaca cacaggcact
      361 tcagagatgg ctcatcttcc gtaaggtcag ctgcaggacc accataacta gctgcagtca
      421 gtaaatggct tattaattag cacagtgatt ttacattgct aagagctctg atgtatggag
      481 ctagaattgt aattgtgtag gatcgaaata ataagccatc tcagggctcc ttatgcaaat
      541 tgccatatta taaaatcatt acctatctaa acactgagtt ttaataagaa ttacaatgat
      601 gaattttatg ataattgaca ctcaaatttt aatctcttgg atttttatca ttttggtagt
      661 taaagtgtgt ttctaattaa atgttgct
//
LOCUS       KCLJ01002856             790 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 318458cal ultra-conserved element locus
            uce-5676, sequence.
ACCESSION   KCLJ01002856
VERSION     KCLJ01002856.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 790)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 790)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..790
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="318458cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>790
                     /note="ultra-conserved element locus uce-5676"
BASE COUNT          237 a          156 c          190 g          207 t
ORIGIN      
        1 cttcctttag ctgaacagtg aggaagaggt gatttcagag ctaactaaga gttaactggc
       61 tacgtttcaa ctgtcaccat tgtcctaaat ctacatagag agagagagcc agagaggtgt
      121 aagtacagca agacgctggg tcatttgtaa gtagaaattt ctcctcagag cacatttttc
      181 cagtttgtct tgatctttcc ctatttttta aacacaacgt gtgatggaga cgattgttat
      241 tatccaaagg acctgacttg ctggctcact gcatctctgt ttatgaaatg ccataacaaa
      301 agtgagctca cgcttgtgtg cttccaatgc gtgatgttcc tgtgtgccag atgggcactt
      361 tcatgactgt atgagcgtgg attatttcat ttcctacatc tgggactcca aatggctgca
      421 cagaatgcca caggagagag gaacagatct tcagctgggg aaacctacct tcacagggga
      481 accagctaca tcagagggga caaggcagaa aagccccgag tgatatctga aagttcacaa
      541 gggccataag ggaaaccttt agaaccagga acaagacaaa aataaacaat aactaatgtt
      601 ggatgtcagc tgtgcagagg gggagggaaa ataaaccata agcagtttct tgtctggcca
      661 cagaagatgt gtttggaatg ctgttttgta tttcagctca gaaactctgc tgtgaccttc
      721 agatattgct gggtattaca agttctacgg atagccagag agaaatattc caaggagaga
      781 tggcatacac
//
LOCUS       KCLJ01002857             686 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 318565cal ultra-conserved element locus
            uce-1786, sequence.
ACCESSION   KCLJ01002857
VERSION     KCLJ01002857.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 686)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 686)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..686
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="318565cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>686
                     /note="ultra-conserved element locus uce-1786"
BASE COUNT          245 a          124 c          121 g          196 t
ORIGIN      
        1 aagcacccta atttctattg tctaagaatt ttcattgact agccagggaa aaattagtat
       61 cagtagcatt tacattgttc tataaatggc ctgaacaaaa tctcataaca aatccgcagt
      121 gtagtcggaa ctcatctgtt ctttgcactt cctactttgc agatgagaca gtctcaaaag
      181 actgggtagg ctgaagactg gttggacaac tctataagtg aagtctcaag actcttgtca
      241 ttctagctgt ctaaattact taaacaggac tcagagggat ttaaagggga gaaacgacat
      301 gacaaacaat tatattctaa cacactattt ataacaatgc cctttcagat tattgttcca
      361 ctcagactga cacattactg taatcccagg gatgaatcaa gggacttaga gttagatcgt
      421 gcacagcttg taggcataaa aaaaatacaa ataaagaact gacattcagg aaatatagag
      481 cgactcaagg ataaattctg ctgggatgag cttaatttat caatgtcaat aacaacggtg
      541 aacacatcgc aagaatacat gcatattaat tgaaaataac tcagattaaa tcactgcagt
      601 ttgacatttt gagataggca ctttatcttt tcaagaaaga gagcactata aaatctttaa
      661 tctgaaaaca catcttaatt gcgtgt
//
LOCUS       KCLJ01002858             596 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 318676cal ultra-conserved element locus
            uce-6399, sequence.
ACCESSION   KCLJ01002858
VERSION     KCLJ01002858.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 596)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 596)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..596
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="318676cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>596
                     /note="ultra-conserved element locus uce-6399"
BASE COUNT          202 a          113 c          118 g          163 t
ORIGIN      
        1 gtgagtcata cagagaaaga gagttagccc aacaacacat ctttacacat aggagcttaa
       61 tcagattgag atcttatcag ggaattaaag aagaaaagaa aaaggaaaga aaagagacaa
      121 agtgctagat atcaccaact gagtttttga taacgaaaag acattgctca gttcttgaat
      181 taacctttgt gtcctagaca cactattgtt tactctttcc cttttttgtt ctatgccttc
      241 tggaaaagga cacccacaca ctgtggcagc agctgctcct attaatttaa agctattaca
      301 aaaattaaaa ttaaacccaa ttactttggc tggtttatag ctggggaacg gcttagtctg
      361 attattccct ctggttatgg acaaaaacaa tattcctacc tacaggcagc tgccagtgga
      421 atactaatgc atctagggcc tggcaggaac agattcagaa tgcagagtct aactgcattt
      481 cttactaaaa aaatatctta tcacggatct gcagaaatgc accaacttct tactctgtga
      541 gtcacaatga agctgatttg tagttagagg cagggaggca aaatgatggt ggaaac
//
LOCUS       KCLJ01002859             699 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 318784cal ultra-conserved element locus
            uce-3821, sequence.
ACCESSION   KCLJ01002859
VERSION     KCLJ01002859.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 699)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 699)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..699
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="318784cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>699
                     /note="ultra-conserved element locus uce-3821"
BASE COUNT          190 a          144 c          197 g          168 t
ORIGIN      
        1 tgttaacaat attttaaaca aatttcttca aactccaagt atttcttgaa tttagcgttt
       61 gatacacctt agctgacccg tgcagcaaaa atctgctatg ccaataacaa ctgttacaaa
      121 acaactgtga ccatggacca aaatacttgt ctgtgtaatg gcaaggtcga actctgttcc
      181 cctctgacaa cctgtttgaa caaaatggag gaggaaaaaa ggaagcataa ttacatgaga
      241 ggtggcagca gtgttggtta aggtggtgcc atctgacaca gcagacatct ggctcagggt
      301 tggggaaggt gtttcagagc agtcagtggt atcatagctg caagtctgca gctcatctag
      361 gatggcagtg gagcactcgc tcagcgtgcg cgaggagcac tcgctcatgg cagagtctgt
      421 gctcacagag gctgcttcgc tcccgtgggc agcactggca gcagccagga acgggcattt
      481 gtatggacac tgggacaggg ctgggctctg atcaaagagg gaaggcaaaa aatcatcaag
      541 cgttggcaag gaatatggta ctgggtgggt gccactgtct ggtgagaaag aggctctgtt
      601 aactggtacc acaggagaag gaagaggcag tggagaagct tctgttgctg tttgtctgtg
      661 tgtctgtgaa gcatttacct ccatcacagg ggcagttac
//
LOCUS       KCLJ01002860             420 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 318893cal ultra-conserved element locus
            uce-5239, sequence.
ACCESSION   KCLJ01002860
VERSION     KCLJ01002860.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 420)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 420)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..420
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="318893cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>420
                     /note="ultra-conserved element locus uce-5239"
BASE COUNT          133 a           76 c           76 g          135 t
ORIGIN      
        1 aaaaagtagt aaccaaatta ctcagaaaaa gtaggatggg aaatgggata acatcatatc
       61 ttgttttgaa aagctgtgta atgtaataca atattgtaat aatgtaatca tctagtgttt
      121 attttattat gtgtaccttc tactcagagg gttggcatta ttgttcctaa cagtgatgga
      181 tacaagcaga tcatgcccta tgacctctac catccccttc ctcggtatgt aaaaaaacca
      241 gatgctaagc ttaacagatc tggttcttct ctactttact ctcaggctaa attaacagat
      301 cctgcctctg gactcagaga tgttcaagtg ctaacctgtt gtaataaatt ctgtcaatgc
      361 agaactgaaa ttaaagccta tctgaaggag aagtccattt attgagtgtg tgatcccttt
//
LOCUS       KCLJ01002861             610 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 319002cal ultra-conserved element locus
            uce-7545, sequence.
ACCESSION   KCLJ01002861
VERSION     KCLJ01002861.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 610)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 610)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..610
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="319002cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>610
                     /note="ultra-conserved element locus uce-7545"
BASE COUNT          196 a          138 c          103 g          173 t
ORIGIN      
        1 cttccatatg caataaaaag catttcacat gcatgaaaaa ctagtgcacc aaattccagg
       61 ctataaataa ggcaattgta aaatgtaaat gcttagaaac actagcaaac ttgagccaac
      121 aaagccggga tcagaaattt ataccctcgt tactggtaat tacagtcaca ttctttactg
      181 atctgtattc ccaaccaaaa cataaaagtg tcctggtgca ttacctgctt ggaactaagt
      241 caccccaagc acacatgttc cagaaagcca gtctggggcc atgctagcac atggagctct
      301 gctgctgctg taaatgtacc tgtctacctt ttaagcaaag taactgaaag cccctcaggg
      361 tgttcttacg aaatgtaaat tcactgactt ggagacctca gcataaaatt gctgctttta
      421 gtggatggca gtttaacccc ctccttcccc taacaaaatg aggaaaaaga aattcagttt
      481 ttttcttctt cagtaattta ggcatctaac agcaatcagc aataaattct taatgctctt
      541 gtaatctcaa cctgtcaata attcatattt gaagcttccg ctcttcaatt gtgaggaaag
      601 atgagccttc
//
LOCUS       KCLJ01002862             650 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 319110cal ultra-conserved element locus
            uce-6535, sequence.
ACCESSION   KCLJ01002862
VERSION     KCLJ01002862.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 650)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 650)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..650
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="319110cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>650
                     /note="ultra-conserved element locus uce-6535"
BASE COUNT          229 a          105 c          110 g          206 t
ORIGIN      
        1 aagatttttc aggagaaaaa atcaccacca aacactgaag ggtattttat gttatgtaca
       61 tttggtcttg tttgtgcagt tctaacccct ttataaaaat tctttgaccc tgcactgaat
      121 gctcatggtt gattggaaaa tcaatgaagt gctgtgagaa ttgtacctca ctgttgcaga
      181 aaagccacac aaaaatccaa cttttcacat gagttgaaga ttgcctttgg ttcatttact
      241 ctcttaagac acattaaaat caaatctatc accccatttg gccatctgtc aattctcact
      301 acacagtaaa tgagtagact ttgttccttg atcaccagaa atggaggatg ttttgttgtt
      361 gtaataaatg gtcataggcc ttagagacag aaataaatca atgcaattta taaagttggg
      421 gtgaaaatgt tagatccagt tttctaaact acagagaatt atgtatggat gaattgcaat
      481 aaataaagca cagctttagc agcttacaaa aataaataat aatgatgaaa gaaattaatg
      541 tgtagtcctt tattttgaaa ccttttaaag cgtaaaataa atacaagaat aagttgcgca
      601 tcaaaggtgc atctatatac acatttcatt ttatctggtc aggcaataaa
//
LOCUS       KCLJ01002863             542 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 319220cal ultra-conserved element locus
            uce-4199, sequence.
ACCESSION   KCLJ01002863
VERSION     KCLJ01002863.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 542)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 542)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..542
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="319220cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>542
                     /note="ultra-conserved element locus uce-4199"
BASE COUNT          136 a          124 c          123 g          159 t
ORIGIN      
        1 aattcaagtc aacctcttgc cccgggcatc ctccaccgag agcggtagga ggaggaagaa
       61 tcgcactagc agcctggttt gactttgatt tgaaccattt tgaatatatt tagtcccagc
      121 tttcccctct tgaatgcgag gctgtcccaa gtttcaaagt gaccgaaaag tgacaccgtg
      181 tgcattttgt ttcttattaa tcttacacat tgacagtctt tgttaaataa caaggcgtgc
      241 ccttcaccag gcgacatttt catatttgtt agacgcggtg acctgaagtt cacctcggcc
      301 ttggacttag tttttctaaa aggtctataa cagtgtcttt tagatagcag ggtgctttgc
      361 ccaggtcact ttttctaagg gaaaaataag aaaaaaatcg agggaaaatg taaacgttat
      421 ggaatgtatc gactgtattc ctttctttgt tcctgggaat gatacagccc cgaggctgct
      481 cctgcctccg cggagtccat cccggtgggt gctgccgggc cccaagttca gcatttgata
      541 aa
//
LOCUS       KCLJ01002864             737 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 319329cal ultra-conserved element locus
            uce-499, sequence.
ACCESSION   KCLJ01002864
VERSION     KCLJ01002864.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 737)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 737)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..737
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="319329cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>737
                     /note="ultra-conserved element locus uce-499"
BASE COUNT          229 a          123 c          132 g          253 t
ORIGIN      
        1 gaaaatagat cggctgccgt tttcatgaga tgcagtgaca aacaggagat caaatttttt
       61 ttctttaaag gtgtaagata ccgagatgct gaacacatat ctttcctcta gtgatggctt
      121 ggagttaaaa accacgtaga tcttgatatg caacctaaat ttggcatcag gaaatgggaa
      181 attgcatctt taagcagagt acaatcaaaa atgaattaca ataaatccta tataattgca
      241 taggtcattc tctttaatga gattttatta acctgactgt caagcttttg agtcaggcag
      301 atattttatc ttcttcaact gataaaagtg tcagctataa accaccatat aaatattcat
      361 aaatctacac atctgtggca gcctatcagc atcattcttt tggacattaa aagcattcta
      421 attactttct gtctagcaga gctgaaatgc tgcctgttat agtatgtgct tggcaggcat
      481 gattgctttt gtttgccatc acaaatagca gcatcctatt ttatatactg atggtccaga
      541 atatattcag ggtttgactg aacaggatga atattatgaa gcaccatctg gttttgatat
      601 catcgggtat attaactcat ctgttaattt ttgacacatc attgatttat ttatttagaa
      661 aaattggatc ctgttttggt atgttgctgt ttgcctttgt aacaaatgtg atgacatttc
      721 cttaccaaac agggaga
//
LOCUS       KCLJ01002865             510 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 319437cal ultra-conserved element locus
            uce-5418, sequence.
ACCESSION   KCLJ01002865
VERSION     KCLJ01002865.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 510)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 510)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..510
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="319437cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>510
                     /note="ultra-conserved element locus uce-5418"
BASE COUNT          139 a           99 c          106 g          166 t
ORIGIN      
        1 gctgcagaac ctgaaactta atttttccag agccattgga agacttgtct cttatcacta
       61 ctgttcagct gaggagttga aaggaacttg taggagctgc aataatgcaa gctaagcaag
      121 gttactttta gcttcattat cttcacgact tcttaaaagt tattcaccat ccaaagcatt
      181 gtattgttat ggtctataga tgtgtttgct ggctgtatac tgtactttct ttatctgacc
      241 ttgctcattc aaagatgcac ttgttatagt atgtcagtca ctaatgaggc ctaagtaatt
      301 gagcctgatt gaactggcaa gatgctgcct aattataatg ataaatggaa ttggctgatc
      361 agctatggag gtgaatggcg tggagagcat tagaacaagg tcactctgtg aaggagaacc
      421 tcaattattc tcttcgtctc caaattcaga gtcctcatct ctttgtcctg ctacatagcc
      481 agactcagtg tttaactgtc ctgagactgt
//
LOCUS       KCLJ01002866             502 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 319542cal ultra-conserved element locus
            uce-7188, sequence.
ACCESSION   KCLJ01002866
VERSION     KCLJ01002866.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 502)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 502)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..502
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="319542cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>502
                     /note="ultra-conserved element locus uce-7188"
BASE COUNT          157 a           73 c           99 g          173 t
ORIGIN      
        1 gaagcactcc tgatattgtg caatgcactt gggggtcagc tacacttgac tgatgcatga
       61 tttatcccat gtccctgcca cttcctgaga taaagctgct attttatcaa aaatgccagc
      121 aagtgtgatt tagaatttat acccctcctt tttcaaataa ttgttctgat tactttctgg
      181 catggcaata aaatgataaa ggtaattgca cacaaatgtg agatagcacc aaaatacaat
      241 aaaattaacc tgaattagct tgacttgtcg atgagaagta tttatgaaat gtatttttgc
      301 aataagggag actgatatta tagctggaag gtgagttatt gccttaatgt aatactgttt
      361 gaaatttaaa aaagagactg ttacagttga gggtgattgt gcctttgaaa ttaagttgaa
      421 gtgattctta taattggcag caataatgca ttgggaaggt aatatctttt attgtgttat
      481 gcctagttgc attatctttt at
//
LOCUS       KCLJ01002867             671 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 319650cal ultra-conserved element locus
            uce-3187, sequence.
ACCESSION   KCLJ01002867
VERSION     KCLJ01002867.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 671)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 671)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..671
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="319650cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>671
                     /note="ultra-conserved element locus uce-3187"
BASE COUNT          202 a          127 c          123 g          219 t
ORIGIN      
        1 ctaaaattca gcatcttcca gattggcagc tctggcaggg tgagatgaga gttctgtgtc
       61 atgaaactat ggtcacttag actgtagaag aaaatcatca aaatttattt cctgtttgac
      121 ataggaaata tgaagctaac attttatttt acaatgctag atctgaagaa agggaaaaag
      181 agaaagaagc ttaaaaagag gatggggggg aaggcagtac taaaactgca gtcttagcct
      241 tctaaaccct tttgcttctc tgattgatac ttttcaatta taccttccca tttcactgac
      301 atttgaaatg ctattttttt tatagtgata acttcaaatg cttaagttcc aacagcacca
      361 gtaaccctgt ttagctgtag tagtaaattg gttccttgta caacataatg gcagtgacag
      421 ccttttgcta gggaaatgag ttctccaatg ggacatgcct atgataagac gtccggtttt
      481 gaaattgtat ttctctgtat cagaattaaa tctggacttt atatttcttt gctgccactg
      541 ctccgtagct ggtccctata cagtacgacc aaagactgac aagtaatgct tacacaggaa
      601 ccctttcact taaattggat ttgtcctttt atgtttcctc ctattattag ctattaaaat
      661 ctctcaaacc c
//
LOCUS       KCLJ01002868             597 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 319761cal ultra-conserved element locus
            uce-2928, sequence.
ACCESSION   KCLJ01002868
VERSION     KCLJ01002868.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 597)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 597)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..597
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="319761cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>597
                     /note="ultra-conserved element locus uce-2928"
BASE COUNT          214 a          118 c           84 g          181 t
ORIGIN      
        1 aaaaagacat tcctagaatt atgtagatca gtaaaatgag ttcattataa ttacttactg
       61 ttatcgtgta attttttaat ttcacaaagt tggatgcaat gaaaatgatc ttgatataac
      121 ctacaaaaag cagtctatgg tgaaatcatt aatcacacaa aaagcaccag cttctcaacc
      181 ctatttgaca gttccaaaat ccaggcacac atccagaaga actttctgcc ccacgtctgg
      241 tcagtaaaga aattgaggtt aacctttaat ttttaatgtc acctgcagcc agtgactgct
      301 ttttctaatg caagtgacag ataaacagca aaacactccc aagatgatac acaaagcacc
      361 acataccata agtgcatttt tatttttata ccaactcaat ttctcaaatg gataaccaat
      421 gttcctacta atttacatta agaattgagt gaggcatgaa aattgttctg atgcataggc
      481 tctatttctt taatgtactg catagtgctc tgtactttat tgcaacactg gaaaaagcta
      541 actacataca gaaactacat atccaagctc atatacgtct taaaaatcat ttcagga
//
LOCUS       KCLJ01002869             669 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 319866cal ultra-conserved element locus
            uce-6258, sequence.
ACCESSION   KCLJ01002869
VERSION     KCLJ01002869.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 669)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 669)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..669
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="319866cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>669
                     /note="ultra-conserved element locus uce-6258"
BASE COUNT          202 a          144 c          132 g          191 t
ORIGIN      
        1 actctggaaa ggccgccggt cccgtgcccc agggtctggc actgctgttg ccatgtccca
       61 cgccaagttc cccgagaggg gacagcagga gccacgagaa acacccgcca tatcttgtct
      121 ggctggtgcc tttataggga tagagacaga gactattttt tcaccgtttc acttcaataa
      181 agtcatccca aggcattatt tacaaccgcg cataatttac ctatgctatt tggcaaagca
      241 acttcggaaa agaaagtgaa tgaataaata cttcataact gctggtagaa cagactggat
      301 cctgtaatga agaaaagatt tatgtcacgt tctttcagcc caaatagcag cagcctctgt
      361 ttgtctcagc ccagtgcttc tatttaaatg ttactttcat atattatgtg gcattaattt
      421 aactatagct cattaaggca gaatgaaatg gttaaattaa cttatcaacc cataatgatg
      481 atgaatgagg tattaattca gatacaagct gggcaatttg caagtttacg cattctgatg
      541 gttctcaaat aacattttga atagcgggtc agcgcctcaa tcaattacat aagcatgtaa
      601 agtcggtctc tcggaaaaaa atcctttttc atgcatatgc attaaaacat gttcgcaatt
      661 atcctcgga
//
LOCUS       KCLJ01002870             478 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 319978cal ultra-conserved element locus
            uce-1344, sequence.
ACCESSION   KCLJ01002870
VERSION     KCLJ01002870.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 478)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 478)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..478
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="319978cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>478
                     /note="ultra-conserved element locus uce-1344"
BASE COUNT          152 a          100 c           78 g          148 t
ORIGIN      
        1 aaaaaaattg taattatcca cagttttatg aatccacctc cccttaatgt tcattattta
       61 aaccagcagc aattacaagt tcaaaggggt ttagagggcc agcaacccgc ataatcactg
      121 ccaaattaag cgggactcat tcgtcacaga agagtacact ctgagcagtg aatcatgcat
      181 gcagtgacag gcactgattt acataaagac gaaatctgtg ccctctaggg ctgagtgtta
      241 ctttatctca gtggccctgt gatatatgca ttttcttttg gtgttaggaa ggttcagaga
      301 ctgatgctct ctaatacatt atattttatt ctcaccatca ccagtactgc ctaaaaaata
      361 ctaataaaat actgcctaca ctaattcgtg tatttagcta acaataatca aaacttcaag
      421 cctcttgagt ttttaaaaac aaagtttagt ccagcttttc taatctgtta cagtactt
//
LOCUS       KCLJ01002871             561 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 320088cal ultra-conserved element locus
            uce-5129, sequence.
ACCESSION   KCLJ01002871
VERSION     KCLJ01002871.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 561)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 561)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..561
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="320088cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>561
                     /note="ultra-conserved element locus uce-5129"
BASE COUNT          151 a          116 c          111 g          183 t
ORIGIN      
        1 taattgagtt gaatatttaa ttaaatatct aaagcctatt ctgcatagca aaagttctgt
       61 cttttcttaa gcgacatttg gccttttgaa gaaaaaattg gaaatgctaa tgtttttcat
      121 ccaactaatg ggagaaaata aaaatgtctc catagcaaca aagcttcttt ctacatggtt
      181 tcctaaaata tgcctgaacc agaagcagat gcctgatttg agaatctcgc cttcttcaat
      241 gtaaacaaat aacttatagg caggtgttgg aaataatatg gaaatcctat taaagagctc
      301 tgggttcctg tcagtcagga agcccctgcc acaaaggggt tggttgtctg aataaaggag
      361 ccagagtaaa ttctcgttag gctttagctt ttcccaggaa attattgtct ctgcatgctc
      421 tttctcctgc aagtctgaat gcaagccatt tcttctactg attgccaccc tcgctttctg
      481 cctctcttct cctgctggat tagcacttga tgtcagtggc gtgctgctgc ctggggtgtt
      541 ggtgatttta acccctgttc c
//
LOCUS       KCLJ01002872             400 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 320306cal ultra-conserved element locus
            uce-4797, sequence.
ACCESSION   KCLJ01002872
VERSION     KCLJ01002872.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 400)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 400)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..400
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="320306cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>400
                     /note="ultra-conserved element locus uce-4797"
BASE COUNT          133 a           76 c           67 g          124 t
ORIGIN      
        1 tttcatggcc tgttccctgt actcctggaa ttttgtgtca ttatctcctg ttaaaaggat
       61 tcaaatgaca ttatttgcat ggaaacttgc atacaaatga tgtcgtctgt gccacaaagt
      121 tgcattacaa tgaagggaat gatgactgtg tcacatgtac gtgacattct ttgtgtcatt
      181 aaatttaaag tcaatgctgg cagttataaa ccactcacgt ctcaagcaaa tacatcactt
      241 ctgatctgaa atgaatattt taaaatgcca actccaactg catcaaacag caataacctg
      301 caatgtcatc ttggaggcaa agactctaaa caaaggtgga cttatgggat tgtatgatac
      361 accacaaatg aaaatatttt aataagctat aataatttcc
//
LOCUS       KCLJ01002873             642 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 320408cal ultra-conserved element locus
            uce-5076, sequence.
ACCESSION   KCLJ01002873
VERSION     KCLJ01002873.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 642)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 642)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..642
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="320408cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>642
                     /note="ultra-conserved element locus uce-5076"
BASE COUNT          192 a          122 c          119 g          209 t
ORIGIN      
        1 ataataaaaa ggcattagta aaccaaatga atttttgact cagttgtctt catattacaa
       61 acaaattaat aattcctata ggttatccgt gaatgtgatt aatgttcagt gttacttttt
      121 ttagtgtgtt tcggcaatat ggaaacctga gcaagaacac aatttgaaat taaagcaata
      181 aatcagagtt agtgaagtaa ggtgtgcagc cccactcctc agtgtcgtgt ctcactactt
      241 ttggcagcca gagcctcttt atcagctact gtcgttccag tcacgcttgt gttcacgtct
      301 ttgctacatg ctctgctgat taccttggaa aagggcaatg ctgtaactgt tcaactgacc
      361 tttcagttta ttttctcttg tgtaatatga aacatgagct aacgcagccc cagtctagcg
      421 atttcatctg tcgctgtgct tctgcagctt tctgctcaga tgtgatgggg tttctctgta
      481 gttacattaa ttccagaaac tccatcaact tatcatcaca acaatgaagc aaattattta
      541 ctgtacaact catgcataat aaagactgct tagcagagga atagtgggac aatgtatgaa
      601 attaggaaaa aataaatgaa gtttgtctcc ttacatttag ag
//
LOCUS       KCLJ01002874             671 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 320517cal ultra-conserved element locus
            uce-2178, sequence.
ACCESSION   KCLJ01002874
VERSION     KCLJ01002874.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 671)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 671)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..671
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="320517cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>671
                     /note="ultra-conserved element locus uce-2178"
BASE COUNT          193 a          132 c          128 g          218 t
ORIGIN      
        1 ggttatctca gcctgtccct gaaacttgct gtagagccaa gtgcaaaaca gaggagatca
       61 cctcatgcag ctccgaaatg gttaaatggg ttaaatctta tttatctgaa tagaacttgg
      121 gtttagcaga atgctccagc acaaatacct gtggttcact ttgacgttac aatttttttg
      181 ttggtttctt tacttataaa tacttgaact gttagacctt ttactttttt ctctgagaaa
      241 gatgtatttg taccagatta gaaaagctaa actgtttctt tacattgaat aatcagcctg
      301 tcatgacaaa tctatctact tctgcatgag taggtgccag tttgactagc ttcttttagg
      361 ctcacactga gttttaagct ggatccatgt gcatgactgg cagtgcattt gttggaccag
      421 atctaaggag ccagagagcg ttcagctcct ttttgcctac aaaagagcag ccagacaacc
      481 agcaagaggc cttggatgta gcacaaggtg atacttactt agtcagccat tctttttttt
      541 caaatataag agtttttcag tttcacaatg acacaaggaa ttaaattatc agtggattgt
      601 ttttctacag ccaccattct tcacagagaa atactgtacc aactgaattg tacgttttcc
      661 agaacaacgt a
//
LOCUS       KCLJ01002875             519 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 320627cal ultra-conserved element locus
            uce-2526, sequence.
ACCESSION   KCLJ01002875
VERSION     KCLJ01002875.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 519)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 519)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..519
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="320627cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>519
                     /note="ultra-conserved element locus uce-2526"
BASE COUNT          157 a           93 c          100 g          169 t
ORIGIN      
        1 aagcgttgct gaggagtgct tgacttgtca tgaaaattct gcagcaaaca catctagtca
       61 gctaaaattg ctcattaaag aagtgggagc agaagaaatg cattttccaa attgaatgct
      121 agatttacag tctgtttaat actggcgacc tctcgcacac taatgttcag ttcgagtcat
      181 cagctgtccc ttcaggtctt ttatcactgc ttttgtcaag ctatctattt aattgaaaga
      241 agttaattga atgaaaatga tcaactaagc ttgtattaat attgctaatg gaactttctt
      301 cttggccatg tttggagaaa gatgtcatgc tagactttag gaaaggccca ttaaggcttg
      361 cacttaacct gatgggctaa ttaaggaatg cttattcatt ctacaagtct aaggtagcct
      421 ctatccagcc tattctgcct gattttacaa cacatttcac ttatgagcat aagcattaat
      481 agcagtgaga gtaactgata atgttttgat tgcattgaa
//
LOCUS       KCLJ01002876             845 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 320735cal ultra-conserved element locus
            uce-1910, sequence.
ACCESSION   KCLJ01002876
VERSION     KCLJ01002876.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 845)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 845)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..845
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="320735cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>845
                     /note="ultra-conserved element locus uce-1910"
BASE COUNT          243 a          202 c          197 g          203 t
ORIGIN      
        1 tcctaaagcc gtgtttccaa ggataaaatc ttacttgcaa agatccttat tacatgtgcg
       61 tacccttaag ctgctgagat gacaccacca cttacaggtg gtggagtgaa agcaagcaaa
      121 agcaccaaac ccctaaagtc tcaagtcact gcaatcatct tcaactccca aattgtcctg
      181 gaaggagaat agcatcggat ttgtcttagg ctgtttggcc aaactggggc acagatggga
      241 taatgacttt tacaaacagc attttgatga gaggagggga gaaggaatca tatgtaaaat
      301 gcacaaaggc tgcataaaca cactgatgcc tgcagctgga acaaactaaa aagatgttta
      361 ataatttaga accaagcagg cagggcctgt gcagctgttg tgtgcagggg accatgaaag
      421 tcttccattt gacagctggc tccatctttc cccagttgct acgtgaagaa gcgaatgcag
      481 atttgggatt agccaatccc tgttacccct gcccatctgc caccaagacc cccagctccg
      541 gctcctctcg ccggagaagc acagacataa aaaagtccac actctcccaa acatatgtat
      601 gcatcaggat cagccgtcag ccgttccgag gatctgttga catgccgcca gtacatggct
      661 gctgtcgttt ttgctgcagg gcacattttg catttcacac atttgcagaa atacaaaatg
      721 ctgttggatg caaacaattc agggcctaat tggctgaatt acttcaatgt taccttgtgt
      781 cccccacctg attaacatag ctcagctggg agggctagga gcagagaggg atttggaggg
      841 caggt
//
LOCUS       KCLJ01002877             660 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 320849cal ultra-conserved element locus
            uce-208, sequence.
ACCESSION   KCLJ01002877
VERSION     KCLJ01002877.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 660)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 660)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..660
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="320849cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>660
                     /note="ultra-conserved element locus uce-208"
BASE COUNT          186 a          163 c          136 g          175 t
ORIGIN      
        1 tcaataggtg cactgtttgg ttcaccagaa ctgaccaccc acttttatga gaatctgcag
       61 tgaattagaa aatctgtcat tgctggagga gccggacagc taggatacag cctgtcattc
      121 cttccataca atacacaccc tttgtctgct atctcctaaa ctaacctgac ataacttagc
      181 ctcccactca atggcatctt tattctctcc caaggaatgc ttcgttcacc agcattatta
      241 agaaatttct ggacaatgtt tagtggctgc gcaatcatcc aaggttctat taaaaagcca
      301 tctgggtaat taatagcaca tttgttctca gcctcctccc aatttgtcca ttagtggaat
      361 aaaagcacag gacaaagggt aatgtggttc agttatattt tacaagaatt cttcaggaag
      421 ttgaaaacac atgatagttt tctaaagata catatgttta tggggagagc tgcaaaactg
      481 cacaagccag aggctctcac caggctctcc cccatgggca gcagatcagc catgggctgt
      541 ggctgccccg tgctcgtgtc tgcagcccga gatggggagg gtgtgagtca tctccatctc
      601 agctcaactg cagctgataa aacgattcca agatccacgt cagggcacca catcaaaagc
//
LOCUS       KCLJ01002878             369 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 320958cal ultra-conserved element locus
            uce-7002, sequence.
ACCESSION   KCLJ01002878
VERSION     KCLJ01002878.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 369)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 369)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..369
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="320958cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>369
                     /note="ultra-conserved element locus uce-7002"
BASE COUNT          122 a           81 c           49 g          117 t
ORIGIN      
        1 ctccaggtca gattcttctt cagttatcag actttccctt cacttccctg cttgtcttct
       61 aatcaaagga aaccactcca acttttaaat gaaactaatt ttcatattgc ccacatatac
      121 atacagttaa gaaattacag tgacagtgat aaaaaatgtt aatttttctt tccagatgct
      181 tgtaaaacag ccttaacata tgtccgctgt ttaattaaca gagcggcagc atggtggagg
      241 gaagccaaac taataattta aagaagcttt ttccctccct tgatttgaat cccaaaacac
      301 atccatcatg tgcatttctg aaactgcaaa agatttaatt ttctgaactt tcagcaaaca
      361 tcataaaac
//
LOCUS       KCLJ01002879             749 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 321058cal ultra-conserved element locus
            uce-598, sequence.
ACCESSION   KCLJ01002879
VERSION     KCLJ01002879.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 749)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 749)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..749
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="321058cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>749
                     /note="ultra-conserved element locus uce-598"
BASE COUNT          240 a          150 c          126 g          233 t
ORIGIN      
        1 aagcacactc acaaaacatt ctcaccaagg ctccttttac tctgcttaaa cctgacgagt
       61 gacaaatgca gagattctct ctgtagccgc ccccatgata acagatgaca agatgcagca
      121 caagcttcat ctcttgctaa ttaaacgaat caattaagag actattgttg caactgtgta
      181 actgctgttc tatagtggca ataacaaccc cacggggagg tctttcacta cattaaaatg
      241 ctgtcctcca caactccatt tgatattatt agaaacagtt atttgcgtct tgctgtcata
      301 ttagtagcaa aggcaaatta tggaaatatg cagaccagaa tggtcccagt atgagatcag
      361 gtttggtttt caacctccaa gggaacaatt gctgaaattc caaagttccc taaagttctt
      421 taatggaact gataaatcta tcagcacagc atccatttag attctaggta agggtcacat
      481 atttgcatac tttcctgcta agctgataca attcaactag ataaattatc atattaagtt
      541 taccctcctg agttaaactg atggagttca aaattgtttt cgatggttgt cattaatcgc
      601 tgttacatcc taaatgctca ctttgaaatc taattgtgct ggtgtaccaa gggtcatatt
      661 aatagcattt ttaatgttaa atctttgtaa aacatgttta ttttactgat attaccactg
      721 aagcctagaa gactaatgag aaacaaagt
//
LOCUS       KCLJ01002880             676 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 321171cal ultra-conserved element locus
            uce-4956, sequence.
ACCESSION   KCLJ01002880
VERSION     KCLJ01002880.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 676)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 676)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..676
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="321171cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>676
                     /note="ultra-conserved element locus uce-4956"
BASE COUNT          196 a          103 c          148 g          229 t
ORIGIN      
        1 aattcagtct taaattttac agaactaaat ttaatggtga gtgcaatcac actctgtggt
       61 gattgttttc agtgctgctt tattaagtta tgtagtggca ggggttcaaa ctgcagagat
      121 tgttgaaatg gtagatttag agactatgtt agaatgcttg tcagtagcaa gttttcaaag
      181 cgcagaccta gatattgctg cagcttgtga tttttattta aatagtttgg aggttttaga
      241 cttaataccc tgctttcaaa aaatgtttta aaatcttgtt ttattcccca aagatttgtt
      301 ttctgctgtt gcgattacat gatgacagct agctggcttt taaaattgat caggaagtat
      361 tttggcagtc attcagtgtt gtaatagcac tttaatggat atgagctatt cacccagatc
      421 agactcaatg tcaaaacagg cgaaaataca gctgtcactc tggacaagaa gttgcatata
      481 tgcaagcagc tgctaataat actggaaggg aagccttata aaatgcttta aaggtgcatg
      541 ttatgtgcat acatactgct tctacatgtg cagacatccc agagaccttg gtttctggtc
      601 atgggtgtgc ttagagaaat gaaatatata ctctgacctt tgaggaagtt gtgatcagtt
      661 cattatgtgc tggtgg
//
LOCUS       KCLJ01002881             613 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 321278cal ultra-conserved element locus
            uce-6324, sequence.
ACCESSION   KCLJ01002881
VERSION     KCLJ01002881.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 613)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 613)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..613
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="321278cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>613
                     /note="ultra-conserved element locus uce-6324"
BASE COUNT          173 a          161 c          121 g          158 t
ORIGIN      
        1 ttgaaatcag aaattctgca gaggactgcc aaatggtatt accaccacat ctacagccaa
       61 gaaaacctca ccctacccct ctgcatgtga tcctcaccca tacagtctgc tggtgtctcc
      121 ttgcctctgt ttatactaaa gcccttgtag aataaaacat ccatgtaaaa tccaatttcc
      181 tctgaatctc tctctgagaa gaggcctcga gattgagtag ataacctctg cagtaattgc
      241 ctgaaccact cctgtttgct ggaaaggtga gatccatttt tcaattatct atctgcagtg
      301 acagcagcga gcaacggagc taagaggaag agagaggaaa tccagccaac aagagccgtc
      361 tgtgtcaatc ctggcaaacg ggaggtacga tagatgtggt cacagttcct gccatcaata
      421 tcctctaata taaatgtcag cgatgccatt ttacccacag tcatttccca caatgctgat
      481 tacattatcg tataatagag gggcgccagc cgcaccgctt tctctcctaa ccctccttgc
      541 ggtaatgtgt caatagcctg cctccatgaa acaagtcaat tttctgcagg cttggcagcg
      601 gaataaatct gcc
//
LOCUS       KCLJ01002882             654 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 321370cal ultra-conserved element locus
            uce-2710, sequence.
ACCESSION   KCLJ01002882
VERSION     KCLJ01002882.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 654)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 654)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..654
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="321370cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>654
                     /note="ultra-conserved element locus uce-2710"
BASE COUNT          206 a          115 c          115 g          218 t
ORIGIN      
        1 aacatttaaa actctatttt cttcatttta acaccctaca gttccctctt tctaattttt
       61 gccaatggta attttcatta agatgcagga aggtaagagt tgtttgaagt gataacaatt
      121 tacatgcttc taccacagta gtgaaagaag gatctgtcct tcagtctgtt catggtatag
      181 ttacgaaaag tataaacact gaattcctga gcttgctgtg agatggaagg tcattaacag
      241 ggcacttgag cagattggta ttacagtcaa ttgagacgct gaaacatcct aaatggccta
      301 atgcagcaac taagtgcttc ttaaattcca gaacttttac ttgagcagag tattcatgtc
      361 taaagtgaat ttccatttcc tttagtaaat gctgttttta tatagtcata gttgaagagg
      421 caacatagtg taaacacagc agtttgattc tatctccaca gcagcactaa actaatttgt
      481 caagttataa acatgaaatc tgagtctctg tattttccac attgaattaa tagaagtggc
      541 aggagtttgt gtgttaatat atacatgcac tgtcaatata gccctgtcag actaatcagc
      601 attcaaatag gaatggttta atcctttggg tcttaccatt atccaatcaa ttca
//
LOCUS       KCLJ01002883             792 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 321479cal ultra-conserved element locus
            uce-6396, sequence.
ACCESSION   KCLJ01002883
VERSION     KCLJ01002883.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 792)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 792)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..792
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="321479cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>792
                     /note="ultra-conserved element locus uce-6396"
BASE COUNT          229 a          165 c          146 g          252 t
ORIGIN      
        1 tttaatttca gaaagtgtaa acattgccaa gttttgaagg tctgaaccaa ggatactgac
       61 ataattttca aaggcatggg taatacctca gcacctccct tcaacataaa acccagaggt
      121 ctgacacaag caaacctctc tataatccac ttcatgcata acatttctgt cccacatcct
      181 tcctgattat ttgtgaattt acacattttt ttgcatatga ggttcaggtg atgtatttta
      241 ttgctgatac tgtttcacct gtatttagtt ccagtgacat ggaaaacact gcagccaatt
      301 gtccttatta cagtccctgt gtatttctcc ccagtgcact tgcacagggg aaagatgtga
      361 gcatggagtg tacttaactg ccaggctgaa tggctctgta atgtagcttc agcatggcat
      421 aaattaagct gtcatttttt tggcagcaag tgcagagagg cgattttcct gtactgtaac
      481 atttgaaaca acaattttct ggctccagta gtaactgaca gtcctgtgtg atacatgctc
      541 aacatttgtg cttcaggggc tgcagctggc ctttggggta aggtattgtc tttattagca
      601 aatagagctt gccatcacag aacactaata tttcctaact cttttcaaag accctgaaaa
      661 aactgtacct aaaatttact agattccatc aaggtattta actgcattgc ttatatgcaa
      721 aacactattt ttgataatta actcagacct attttcatta ggaagattgc ttacccagaa
      781 ggagcaggtc ac
//
LOCUS       KCLJ01002884             668 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 321591cal ultra-conserved element locus
            uce-7637, sequence.
ACCESSION   KCLJ01002884
VERSION     KCLJ01002884.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 668)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 668)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..668
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="321591cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>668
                     /note="ultra-conserved element locus uce-7637"
BASE COUNT          163 a          159 c          150 g          196 t
ORIGIN      
        1 gggaaggtga tagggaaaag caagggtttg attggcatgc agtgattttg gactagcagg
       61 aagcaggcgg ctctgctctc cagcccccac atacttctca gtccatgtgt gttgagaggg
      121 gaaagaaacc gatattgttc cctctaaaat taattcccag ttagccagtt attcctggtt
      181 tttagctcag agcacactgt aattgcattt ttcatttcag taattataga ggatattaaa
      241 gtggatagac agttgtagca atctggctct ttagacatat ctacttgtcc aagatcaaat
      301 ggctacagca tattcagggt tacagtctcc ttcttttcct tcttgttctc tactgcagtg
      361 gatcggcgtt accatgacaa cactatatct ggctgccagc tctgtcgtaa gttattgaac
      421 tgagactggc ttttggttta gcagataatt aggttctgtc tcacaggttc attttcctgt
      481 gactgggaca tgaatatgac ctacagctgg cctcaatttc agtgtcacag acaaaacttt
      541 aacccttccc agtcccgcca ctactgtacc cgcgatggcg acaattccaa accctttggg
      601 gtgctggaca cagcacaccc tcccggtcct cagggctcgt tgcccaggct gtgttaatcc
      661 ccagagga
//
LOCUS       KCLJ01002885             742 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 321700cal ultra-conserved element locus
            uce-5598, sequence.
ACCESSION   KCLJ01002885
VERSION     KCLJ01002885.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 742)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 742)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..742
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="321700cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>742
                     /note="ultra-conserved element locus uce-5598"
BASE COUNT          204 a          152 c          162 g          224 t
ORIGIN      
        1 ttttcagcta taagaaccag cttgttgcca atttccgtca tgccaggtta aatcccggtg
       61 ccattgaagt cattgtccaa atgctcattg gctgtgaggg gagatgagga tttgtcccgt
      121 tcaattcatt agtgatggta tgaaccccaa gcagtattat gcttccagag aagctcctac
      181 ttactgttta tatactaacg ttatttctca cacgtttatt gtgttactct ccttaatttg
      241 gtgccatgct gggtccctgt gggatgccac tcaaacatta tgtcaatgtt ctcaaaattg
      301 aactccagtg ctttatttta caaatggctt ctagcagatg tgtggcacac tttattaact
      361 taagtaccca ttagttgaaa atttcattag tttgggggaa agggatcagt ttcatcaata
      421 gatctggtat gggtggaccc tttgtgtcaa cctgacccat atcaaaacgg attattgttg
      481 taagtgagac aagtgaccta atgttctgcc tattatgcac acatgatcta taacctttta
      541 aaatactagt gtgggaaagg agcacacttc agtgagtccc caaaccatgg attcttaaca
      601 ggtggcagtc cctctcttag caacgtttgc catgggctgt ctgcgccagc atatgaatta
      661 tcagggggta cagtttccaa ccaggtaacc aggggaaaac tgggatggag aatgaaacca
      721 gaataatgaa cggccaagca ga
//
LOCUS       KCLJ01002886             510 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 321809cal ultra-conserved element locus
            uce-3832, sequence.
ACCESSION   KCLJ01002886
VERSION     KCLJ01002886.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 510)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 510)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..510
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="321809cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>510
                     /note="ultra-conserved element locus uce-3832"
BASE COUNT          154 a          101 c           85 g          170 t
ORIGIN      
        1 tgaatcaata ttcctgcaac aaaaatgtgt aactgatatt tttgttgctg ctaaaaatgc
       61 ttctcagtaa acttgttttc ataagaggtt tgcccattca tacgtcccag agctgttgta
      121 atcttcattg ctaatgctga tctaagagca tggacataat tttatttctt gacacattta
      181 aagttctcta atgaataaag caaacagctt atggctgctt ggactgtcac tcgattgccc
      241 tggagggttt taatgtcttt aaaataggcc tcctagtttg tatttaacta ccttgcccac
      301 agaggtctaa ggggtaaggc agatcaaaga tgtaaaaagc agctgtcctt catttacctt
      361 taattagcta catctgacca gattctttat ggcctctttg tcacacattc aacagtctat
      421 aagctttctg acctgtcctt aaggactcaa ccaaagagtt tcaacaaaat acaaaaaata
      481 tgagatacag atctttgtat ttgatctcac
//
LOCUS       KCLJ01002887             685 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 321916cal ultra-conserved element locus
            uce-5797, sequence.
ACCESSION   KCLJ01002887
VERSION     KCLJ01002887.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 685)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 685)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..685
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="321916cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>685
                     /note="ultra-conserved element locus uce-5797"
BASE COUNT          189 a          162 c          176 g          158 t
ORIGIN      
        1 ggatgcactt gacagagcat aatatatcac ctgtcgagag accccggcct tttactggaa
       61 taattgcaga ccgaagccct gtccaggctg ctgcccccgg cgcagggaca ccagaactga
      121 ttgtgttcat agcacagtga caccaaaggg ggtcacgtaa ataaatatgc atgtctcacc
      181 agtgcaaaat aataaaattc caatgtgtgc aagcctgctt gttgaacata tgtttgcagc
      241 acggctaagc catctggctc aatgtcaagc atttacacca actgcagtct tacactacct
      301 gacagcagaa aagctttatt cccctggtgt ttgggcacaa atggagaaat attattgaaa
      361 tgattatctg catcaagact cagatttggt ttgacattta gctggctctg tttaatccaa
      421 agggttgtct gaatgaataa agagaagggt tcctccagaa gatgctgcga gcagccaggg
      481 agagccagat gattaatgag actgagaggc tgggtggacc ctgcccacct ccacccagac
      541 ctcggtgcca agaactgcat gggaaatcag gctgagcctt ctggagcttg tcaggaggtg
      601 ctcacagccg attttatttt ggggcctcag gagaacagca gaagcgagcc cgttgctccc
      661 tggcaggaag gaaaggtctg ggccc
//
LOCUS       KCLJ01002888             612 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 322024cal ultra-conserved element locus
            uce-4851, sequence.
ACCESSION   KCLJ01002888
VERSION     KCLJ01002888.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 612)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 612)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..612
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="322024cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>612
                     /note="ultra-conserved element locus uce-4851"
BASE COUNT          167 a          125 c          158 g          162 t
ORIGIN      
        1 cagaattccc taaagcagtt cacagtgatc catccgtggg cagggagaaa caaacccgag
       61 gagttggttt attcacagat cgccaggagc gctaatgacc ggcccagcct tgttctgcca
      121 ctcacccaga tggctgttga taaagattta gcatcatgtt ccgagtgtca gggctgtcag
      181 tagtgctgaa ccatttgacc agaagaaaaa acgcacaggg agctattgat tacagcttct
      241 cagtgtcact tgttcaccag gatttaggta ttgatgaggc tgcgagtgaa aacaagctct
      301 ttcccttgtg ggcctctacc cagaagaaca aaatattcag ctggtgcccg aatcagaggg
      361 actccggcat cgatccgagg gctccttcat attaaaatct gtgggtttgg aagttttata
      421 gcgtttgagg taggggcgtg tgatggattc gtggaggaga ggaattagat ttcacagcat
      481 gaagatttca gcggtgctat aatgttatga gctgcttggt tattgataaa aattgcatta
      541 aatgtagctg aggcattaaa gctccagact agggtagttc tccctctaaa atgtccttag
      601 ggccctaata aa
//
LOCUS       KCLJ01002889             632 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 322134cal ultra-conserved element locus
            uce-681, sequence.
ACCESSION   KCLJ01002889
VERSION     KCLJ01002889.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 632)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 632)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..632
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="322134cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>632
                     /note="ultra-conserved element locus uce-681"
BASE COUNT          202 a          128 c          114 g          188 t
ORIGIN      
        1 gaaagtaaaa gtactgtcca ctagaacaca ctttgtgcct tatcacggtc ttgcaacctg
       61 ggaacagcaa ttgtttacct tgtttccccc attgtctcca gtgattactg gaatcacatt
      121 tctagggtaa acaaggtgct cttccccatt gtcccatttt ctgtcagcca gctttgaagc
      181 aaagtaggcc tcccaataag ttttctaatc cagataagca gggctaagat atctgacagc
      241 tgcttcacgc tcttcatcat catctgaaac aatcagtacg cattagagag tacttttccc
      301 tttacaaagg tgataattag ataacaagct gagattaaag taattacagt tagacagctg
      361 gcaaggcagc acagtcatgt tgaaatattg ttgatacttc agcatctggt tctaataaca
      421 gcacaggcta agagatttta cattaattac agaacataat ttaatataaa catatttaat
      481 tacaattgat gagcgataaa ctgttcaaga atgacttaac cccttacaca tgtcaaaatg
      541 atgggaactt cctttctact ttaagagcag gctgaaaggt taggaatctc cgattttaag
      601 aaaactctgt gcctggaaag gtgaattctt ga
//
LOCUS       KCLJ01002890             622 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 322243cal ultra-conserved element locus
            uce-2377, sequence.
ACCESSION   KCLJ01002890
VERSION     KCLJ01002890.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 622)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 622)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..622
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="322243cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>622
                     /note="ultra-conserved element locus uce-2377"
BASE COUNT          156 a          123 c          161 g          182 t
ORIGIN      
        1 tactttagca gggtatcatt tatgagcgat cttgtagatc tctgcctcag ttctgtactt
       61 cccaaaaata attggaagct gagctgactt tgttgaatgt gagaatttaa atgaagatcc
      121 gagtgtggga gtgaggacac gtgttgtcgt gttggtgaca gtgtctgaga gtgttgggga
      181 tgtgaagtga ggtgtactgt agtaatttgg gtttaaatgt gccagaggcc cagattaaac
      241 acatttccag gctgatctct tgaagcagtg gaaagatctt ctctgagtgc cacacttatg
      301 acaggttcaa gggcctcaag ccgactgtta tccttctctc ccgaggaatt tccgacgctg
      361 aaagcagctg gcgagcagga caaggttggc aaagaaaagg gcgccttaga tccgtcgtat
      421 gggccaggac caagcctccg cccccagagt gagtgaggga ttgtgtctgt ctgccttatt
      481 tgtagcaaga acttcatcct tacatttcct ctttttatgt gcttacacat gttaggctgc
      541 ttagcacatg atcacagatt ggcatctgtg gtccagatag ccaatcatct actacaatgt
      601 ttaataaaaa ttgctgtgtg at
//
LOCUS       KCLJ01002891             586 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 322353cal ultra-conserved element locus
            uce-4082, sequence.
ACCESSION   KCLJ01002891
VERSION     KCLJ01002891.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 586)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 586)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..586
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="322353cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>586
                     /note="ultra-conserved element locus uce-4082"
BASE COUNT          174 a          132 c          120 g          160 t
ORIGIN      
        1 tgccatccag aggatttcgc tatggctccg tgcatggccc aactatttga tattcggatg
       61 ctttgcccct tcttccattg ctatgacaag gttacacaaa gtctgcagct ctgtgaaaac
      121 aggttcctct ggaagctgca actctgacag acttcgtaca cagcaaggca cccgtgacat
      181 cctggcgtct gccagctcca ttcctgcttg attagctctt ggttacctca gtgataatgt
      241 ctggaggcac tgattaatgc acaataatgg tacatctcac tggaaagata agcttataga
      301 agatcaatta aacagtggca atttcacagg ctacaagctg gaggaatggt acctgcagcc
      361 ttttctctct tttgcttgct ctagaattta aaatgcagga acaccctgaa aacaaaaggt
      421 gatggtaccc attaaaatta caagggaaaa ttaatatgaa tcaaggcccc tgaacattcc
      481 ttcagctgtc agagggctac aaattctgct tagataataa gacaagaagt tttcaaatgc
      541 aaacttgcca taaatggtac ataggagaat gccattgttt catgca
//
LOCUS       KCLJ01002892             592 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 322461cal ultra-conserved element locus
            uce-3909, sequence.
ACCESSION   KCLJ01002892
VERSION     KCLJ01002892.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 592)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 592)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..592
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="322461cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>592
                     /note="ultra-conserved element locus uce-3909"
BASE COUNT          180 a          123 c          128 g          161 t
ORIGIN      
        1 aaaacaagcc cttcagcaat agcacaagaa attgcattaa caacatttaa gcaaagtgtt
       61 gaaaacatac cgaaataaac gctagagcac ttcaggggtt gataggaata tgcatcaaaa
      121 tgcttggcat ttaatctttc ttcgggaatt tagccagtga aatatagctg ccagtgtctc
      181 aggcctgcgt gtgttcttct gcaatatgct ctcgatcaat cagatttgca taactaaact
      241 gtcggcaagc ccgctcggct gcccaggtgc agggccattt gcatatagaa cagtgaggag
      301 gtcccaagag tcacttcaga ctccagtgac tgctgagccc gcagtccaca ccgcactgga
      361 aatgaaattg gaatgacaaa aaaatggttg tgctagtctg caagggtgaa atatgcactt
      421 gtgtttcaaa ggttatgtag agatcacaag acagcattca ggcacgagat tatgcacaag
      481 cctccaggaa agtaaatgct gttgtatgtg ttttgtttcc cttcccccag ccacaatgat
      541 acatatttat ttatttatat gtgtgagtag acacaaaagt gttttttcct tt
//
LOCUS       KCLJ01002893             714 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 322571cal ultra-conserved element locus
            uce-1405, sequence.
ACCESSION   KCLJ01002893
VERSION     KCLJ01002893.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 714)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 714)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..714
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="322571cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>714
                     /note="ultra-conserved element locus uce-1405"
BASE COUNT          228 a          141 c          140 g          205 t
ORIGIN      
        1 acttgaactc aaatgatact atataggctg aatgtgaggc aaggttccca caatgcactg
       61 tgaaaaccta ggctaacaac caccccgctg cgttgaaaac cccaaaaaaa gacaaaagca
      121 caatgaaata gaaagcttac caccggtagc tttcaaacta ggcaaactat acatctccac
      181 cactccaatt ttgtcagaat gctaatgagc ttgctctgat ctttactcgg cttcccgtgt
      241 tttctacatc ttcaaggacc acatggcgct agcaaaataa agacaactaa atgagaattt
      301 cgaatgcttt ttgtgttggg acctggtgcc tttcagttga cgcactcgtt gaatattctc
      361 aacttaaaag cgtacaacag ggggctgggt atgaactttt tagcaggggg aaatttgtac
      421 aaaagtaaat gagtgtgatg aggaaaatat gagaaaaatt tctgattaat ttccgctcta
      481 taatatcaat gacaccttca gcccctctca tactcctcta acaagagatg ctgataaaag
      541 atgaatgatt ctgtgttgtt cacagtgaat gtttagtggt tttttaatag cggcattcta
      601 cataaaagac accaggaagt actccgcatt agcagttgag atcactagtt aataggatga
      661 tgtcttttag cttttgtcac aagattatta gaaaggatgg gtttctgttc tcat
//
LOCUS       KCLJ01002894             635 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 322682cal ultra-conserved element locus
            uce-7898, sequence.
ACCESSION   KCLJ01002894
VERSION     KCLJ01002894.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 635)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 635)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..635
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="322682cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>635
                     /note="ultra-conserved element locus uce-7898"
BASE COUNT          189 a          109 c          119 g          218 t
ORIGIN      
        1 tgcttctctc ttttatagat acaacactgt ttgaaaatgc attgtttcac gcagagggtg
       61 tctataagtg agtgaatatg gtatagtaca tcaagttaaa gagttatttt agacattttg
      121 tttcagttaa aatccagatt tactggattg ttacaaagtc caaaaaccca atctctgcca
      181 cttgaacagt cctgctctaa ggaatatgtg gacattagca taaaggttgc acatgttata
      241 caaagtgtaa ttaaagaagc tttgatcccc caaatgtcaa ctagcttgct aagtgtcata
      301 acaaagtgtc aagcatctgg tatacagtta atttgtagtc attaactgca tattgttgat
      361 gtgacagttt gttagcaaag caagcttgac agtttgcatt ttgttattga ttgacaccta
      421 tagacctccc cacccgtcta gtttacattc tttatgaggg ttactcaggt tgcacttcta
      481 cttttaacta attagtttag ttagttggtt aaaatagagt gaaatagtga gcccaggacc
      541 cctaattcag tgtttctgag ttgcacgtat agattagcaa ccggttttac aaatgtcctt
      601 ttgatgttat tggtaatctg taacctgcat gaaca
//
LOCUS       KCLJ01002895             666 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 322791cal ultra-conserved element locus
            uce-2, sequence.
ACCESSION   KCLJ01002895
VERSION     KCLJ01002895.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 666)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 666)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..666
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="322791cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>666
                     /note="ultra-conserved element locus uce-2"
BASE COUNT          205 a          110 c          128 g          223 t
ORIGIN      
        1 taagctgcta agatttgcct gtgaacggaa gttttaacaa aacagtttgt aggtgttccc
       61 tctgaaccca atatcctcag ctcgtgcatt tgcatgtgtg tgtgcatgca cagatttttt
      121 agtccttaca ctgtaaactt tggaattgtt tgaccctgta aacacaaaat tcatgtctct
      181 caccctggga caaatacatt ctttttaaaa gcagcatatg ggcagccttg gactgatgtt
      241 agtttattgt cactgcttga taacgtttaa tggaaaagat acaagagtgc caaagaattt
      301 taattatttt tgtgataaag ttatatgttc ggccttgaaa aagtggagat aatgctggga
      361 ttcattatta ttcccagtgt gtttaaacag acgacacaga atgcaaacaa aagcagatga
      421 aatttgaaaa gtattatcaa tattgcagat agcagatgcc ctttccaatc agaacaagca
      481 tatcttctat agcaacttta tggttgagta gtttattcat ttctattaga aggttgtacg
      541 tttctaaaat atgtagatgg tatctagaaa accaaccaac cagtagggtc attttgcttg
      601 ttttcctaaa tttattattt cacttttgca ggcttgatct gaggtgcatt aacatgggag
      661 cgaaat
//
LOCUS       KCLJ01002896             398 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 322901cal ultra-conserved element locus
            uce-4619, sequence.
ACCESSION   KCLJ01002896
VERSION     KCLJ01002896.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 398)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 398)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..398
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="322901cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>398
                     /note="ultra-conserved element locus uce-4619"
BASE COUNT          133 a           70 c          101 g           94 t
ORIGIN      
        1 aaaaaaaaaa aaaaaaggag agaaaaaaaa acccctccga ggccaacttc ctgaaattgg
       61 ggtcattctc atttgcaagg cagagaatct gagaacctta atgcaaggaa atttattcaa
      121 aggcagagcc ccggcgtgat taggcccttt gtaattatag ctcggagaga ttccactcca
      181 gcctcctgcc tccctcatgg attagcaagt gagtcggaaa aatacacagg atttaattag
      241 aggcaaatta aaattggtaa tgaaataggg gcagtagcaa atggcaggga gttggaaggg
      301 gaaaagggag ctggtatctc tcggggctgc gctgtctgcc tacgtgtgtg tctctttatt
      361 ttacatttag aaatgtaaag atggtcgatg taaagaag
//
LOCUS       KCLJ01002897             737 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 322998cal ultra-conserved element locus
            uce-2828, sequence.
ACCESSION   KCLJ01002897
VERSION     KCLJ01002897.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 737)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 737)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..737
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="322998cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>737
                     /note="ultra-conserved element locus uce-2828"
BASE COUNT          241 a          136 c          110 g          250 t
ORIGIN      
        1 ctttctaaac aagataattt tatccataca aactgttgta attagatatt cattacctct
       61 cccctgaaca agctaaaact gcaatggtta aggctttgaa gaattggcca tccatgttca
      121 tatggacttt tactatctct ctttgagaat gttttctgat ttatacttaa actgcttgac
      181 aaatatttca ttgtccctat acagctcact gctgccactt gtttggaaaa atgaaaggta
      241 agttgaaaaa tgcacctttt ccattttcat ctctaattga attctctctt gaccccctta
      301 ttccccatgg ctgtatttca ggttttgatg ataagaaaaa gaattttgta tttggataat
      361 acaattttct cacttgcctt tagcgacctt cagctcaatt tcctctcccc agagacactg
      421 tatattatag aattgaatca aattccttat tcatagaaaa aaagttccaa tttaatctga
      481 atattcagca ttttacactg gtcagggtga tggatggcaa attgaaatgc ttttggttca
      541 ggtaatcaaa tggtagaatt cagacttgta ttgaaaaaaa taatgaagtc tattcaatat
      601 tctcataagg tgcaaaaaat gcacattaca tggtagaact gggtcttatt atccaaccaa
      661 taacacctcc accacagaaa gtatagtaaa acattaagaa tttatgtagg ttagaagatg
      721 tgaaaatcag ccacctt
//
LOCUS       KCLJ01002898             392 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 323108cal ultra-conserved element locus
            uce-2025, sequence.
ACCESSION   KCLJ01002898
VERSION     KCLJ01002898.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 392)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 392)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..392
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="323108cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>392
                     /note="ultra-conserved element locus uce-2025"
BASE COUNT          163 a           69 c           47 g          113 t
ORIGIN      
        1 gaaagctaca aagaagagat cgaggtaaga gaaatgcaca aaacactttc attttcttta
       61 ttttcaattg atactgtatg aatacaaagt ttctagaaag ctacaaaaat tctaccactt
      121 tatcaagaag gcatcaaaat gtgtcacttt gcaaagacat gaaaacacct gcagtaaccg
      181 acacaaaaat agcattttta gagtgatgaa ataattgcac ttaactgtca tggatattaa
      241 agttatcaca catatgtacc gcgaaagcta gaatacattt tttacaaagc actttataaa
      301 aaaattctct gcacacaaaa cctataattt tcatattact atcatactaa agataaattc
      361 actttaaagc caacacttaa aacattttaa ac
//
LOCUS       KCLJ01002899             742 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 323211cal ultra-conserved element locus
            uce-3670, sequence.
ACCESSION   KCLJ01002899
VERSION     KCLJ01002899.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 742)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 742)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..742
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="323211cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>742
                     /note="ultra-conserved element locus uce-3670"
BASE COUNT          194 a          197 c          160 g          191 t
ORIGIN      
        1 agaagaactg gatgccaaat ttcctctgag tgccaactgg cagctgagct acagctcctc
       61 gaaacaccat tagatcgagt gtgtcaagtt ccaataataa aatttccaaa aaaagcccta
      121 atgatggtag agatttattt taagcctttc aggtatgacc tcaccccctc aagaagtctg
      181 catttccacg gatgtggtgc tctgtttgcc tctccctccc cctgatggag agcagggcca
      241 catgcgggtg ccgtgcctgg tgttggacaa agctctgctt tccacagcag ccaccttcca
      301 aaaacacaac tcgctagact aatgggcagt gagcagccag aacgactgcc ctccttcttc
      361 tccttgtgta actttgccag agtccttgga acttgccaaa ttcggtcatg cctgcttagc
      421 ttgctcgact gattgtgcca gaaaagaaaa taagacacag atgtatttga gctctttgag
      481 atgccagtaa gagcgacagc taatggcttc atttcgaccc tcccctacca gctgggcaca
      541 ggtgggggga taatgaggtc cctctcccta atcaaactca attatttact actctgtaca
      601 gccacaaaga cattcacatc cagctcggaa tataaactgc actgtgggct acttccagcc
      661 accacctctg ggtatttaca actaactcga gtggctcaga gtttgccttg gcaggagttg
      721 ataaagttct gcaaactgtt tc
//
LOCUS       KCLJ01002900             475 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 323318cal ultra-conserved element locus
            uce-3137, sequence.
ACCESSION   KCLJ01002900
VERSION     KCLJ01002900.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 475)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 475)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..475
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="323318cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>475
                     /note="ultra-conserved element locus uce-3137"
BASE COUNT          149 a           75 c           85 g          166 t
ORIGIN      
        1 aaagtgacat cttttggttt caaagtgaat tcatggtcag aaacaaggaa tgccacactt
       61 acctgttttt ctttttcttt ccttctttct tgaaatttat ttctggaagt cattaaaatt
      121 cagatcccat cacttgtaac aaatgatgtg aagtgttagg tacagtactt ggaatatatg
      181 tttgttaaaa tgaaggaaga gactcttcca acactttggg attttatgaa tgatttacat
      241 ctggtgctaa agttcataaa tgaaacgtgg gagaaccaga tgcttcattt cttgactgca
      301 tcgtgtctgc acatactgat ggtgaattga aaacagggat gtctcataaa tcaagaaaat
      361 ctatttttgt actcttgatt tctattctga acatccatat aatacccaaa caaaagtggt
      421 aaaattggtt ccttgagaaa ctctttatgt ttagtaacag tgcggacatg ttaat
//
LOCUS       KCLJ01002901             419 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 323419cal ultra-conserved element locus
            uce-5202, sequence.
ACCESSION   KCLJ01002901
VERSION     KCLJ01002901.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 419)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 419)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..419
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="323419cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>419
                     /note="ultra-conserved element locus uce-5202"
BASE COUNT          146 a           77 c           97 g           99 t
ORIGIN      
        1 agaaggatct tcagagcagc agtttaaagt tatgatggct ccccctgtaa taaagaaatg
       61 gtgaaaaaca gcatagagcc aaagcaggga tgaaatactg agtcctttct tgtgtttcaa
      121 cagggcagag tttagggtat ggattcgtta actacattga tccaaaggat gcagagaaag
      181 ccattaacac tttaaatgga ctcagactcc agaccaaaac cataaaggta agccttttgc
      241 tcaattcagg aaaagtagtt ggacctggca atttcatcac ggttaacgag ctcctccctg
      301 gaacaatgag cggacatgca gaagatgaaa tctctcttct ctgaaattgc tgctattgtt
      361 aaagagaggg gaaagtaaca ggaagcttaa agcatgacag ttagaataga acagccaga
//
LOCUS       KCLJ01002902             564 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 323527cal ultra-conserved element locus
            uce-3300, sequence.
ACCESSION   KCLJ01002902
VERSION     KCLJ01002902.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 564)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 564)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..564
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="323527cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>564
                     /note="ultra-conserved element locus uce-3300"
BASE COUNT          155 a          100 c          125 g          184 t
ORIGIN      
        1 tgaaggcctc ttgcaatagc atccttaaag ctggccagca atgctgaagc tctcagattt
       61 ataaatgtat acttcgctca ccttgtcggt catgttctaa atgccgcagc tgagtcaagt
      121 tgtgtgggac gtggcccttc cgactctcca gtcccacatg accctatgat aaaacaagga
      181 ggtatgactt gatgcaagat tgctgtgccc catttctctt ttttcagctt gactcaatgt
      241 tatttatctc tttctaatct gacagggatc gtttacagtt aagataactg atcagaagga
      301 tatgatgata agaggtggaa tagttctgtt tggaattaaa ctctgtaacc agtagactca
      361 aacacaaaca agctaaaatg gtgattaacg atgcatgtat gttttttcat atagtcaata
      421 gacctccgtg tgcatttatt acagtaatga agtggtgttg atagctaaac tgtgtgcttt
      481 tatttaattg aaagagctgt agtgaaagtt tttaattttg gttttgttgt tgaggagtga
      541 ctttgccatg gggagcaaag ggcc
//
LOCUS       KCLJ01002903             627 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 323637cal ultra-conserved element locus
            uce-5, sequence.
ACCESSION   KCLJ01002903
VERSION     KCLJ01002903.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 627)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 627)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..627
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="323637cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>627
                     /note="ultra-conserved element locus uce-5"
BASE COUNT          185 a          129 c          139 g          174 t
ORIGIN      
        1 aaataagcca ggtgtcaaga gaggaaagat ataagaataa ggagaagttt ctgaaaaata
       61 aaccacaatt tttttctact ttatgatatt tccacctcta tgttctagtc cccttgtaca
      121 cagtgtcccc tagggaagtg gggcccaaga gccctttcta ggatgggaca ggatattaca
      181 gcttggtttg tgcgccagca tccttaatat ttccttcctt tcagaagcaa atagagcgta
      241 cccttatctg aatgctaatt tcctagttaa aaccctccct tgctgacaag ggactgaaag
      301 agttttaaat cacagatgta gagtatcaaa tgcaataatg ctcttgcaat agtgcattga
      361 agcctcaatt aattaaccct tgggctaagt aggcaggtac atggtggtgg ccacaggcgg
      421 tggatggatg agatttaaat gggcatctca tttcctcagc acggaacatg ccgtttggtt
      481 cagaaaggag tcattttaca cactcgcctc atttacgctc agctttaatc cctttaattc
      541 cacctgagat ccaagcaaga atgggaaaag agagagaggt gcaaaaggct acagagctgg
      601 gctttgttta catatgtttc cccaggg
//
LOCUS       KCLJ01002904             523 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 323744cal ultra-conserved element locus
            uce-2736, sequence.
ACCESSION   KCLJ01002904
VERSION     KCLJ01002904.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 523)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 523)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..523
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="323744cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>523
                     /note="ultra-conserved element locus uce-2736"
BASE COUNT          196 a           65 c           86 g          176 t
ORIGIN      
        1 ccccattgta aatagatcaa ttgccagcat tatgtaacat aaaggaagag agttttttca
       61 taatgaaata aaatgagtgc ataaacaaga ccagaaaaga gctttgagtg tttacagaaa
      121 taaaaataaa tgagtgtgtt ttttgaatta atattttcaa atgttcaggt tgaattaatt
      181 tgagaaatat gaatatgtat tggtagtgtt aattctttgg ggttttgaaa attcttacaa
      241 ccacataatt aaatgagtgc ctttagaaat actgataaaa cccattgcca ttcaaatatc
      301 catacaagac aacaggggct gtaagctgta ggctttagag attagtttgg ctatgggcca
      361 gtatttatca caacatttcc atcttagaag ataaaattta atcattttta tttaaatata
      421 aatcaaaatt aatgcaggtt taaaaaaaag gagtgtataa cctaatcaca atatctttat
      481 tttagagatg cttgcctcta ttgtttctat tcaaaggagc aat
//
LOCUS       KCLJ01002905             722 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 323850cal ultra-conserved element locus
            uce-7095, sequence.
ACCESSION   KCLJ01002905
VERSION     KCLJ01002905.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 722)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 722)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..722
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="323850cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>722
                     /note="ultra-conserved element locus uce-7095"
BASE COUNT          238 a          158 c          120 g          206 t
ORIGIN      
        1 tattgcaatt tcctatttat ttgccatctg tcacaagaaa gaacagatat agaacagtgg
       61 caaaatcatg tcaaaaagac tgtcttggga taacaaagag aaaagttaat ggacatggaa
      121 ttacaaatta ttaatgattt ttcttgtcat ttcttgaaaa atgaaagcta tgcacactgt
      181 ctctttcccc aaacagattg cattttattc ctctgcagtt tgtccatcag gcttcactct
      241 gacaacataa tccaaaacta atccagagca ttcagttttc cttgttggct ctcatgcaca
      301 ctgcttagac aaatcctgct acctgtcagc cctcctgtgt gtgccaaaca ggctgccagg
      361 ttaacccctg gggaagccga gagacctgct gacttaaccc ctgcttccct tcaaataatc
      421 cactgtaaat acataggacg ttaacaggct aactgttcta atcagggctg gatcccttaa
      481 aatctgtttc atacacaacc cttaagaact agggatctaa gcatcactgc tggaagagga
      541 aaggattgct tccaataata caagcactaa ataagcagat ggatagaaca cactgaaagg
      601 ttttaatccc ctaaaggagt tagagaaaat atacacatca cttcaattgc ccacctcatt
      661 gctttaaatt ttttgctaat tttcagaaca agatcagaaa taatttgaaa gcaagtctaa
      721 tt
//
LOCUS       KCLJ01002906             532 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 323960cal ultra-conserved element locus
            uce-529, sequence.
ACCESSION   KCLJ01002906
VERSION     KCLJ01002906.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 532)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 532)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..532
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="323960cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>532
                     /note="ultra-conserved element locus uce-529"
BASE COUNT          128 a          124 c          104 g          176 t
ORIGIN      
        1 ttttttattt cccaacatgg cggtacgtgc ttatgcccgc tatctgcata agtcttttgt
       61 gtattgctaa tggagtgctg gaattgtggc agctctgagc agggaataca tgtgagcaac
      121 aatatgctga cagacccctc agtggaatct aatctgttcc agctcatgca ctcctcagaa
      181 actatttaac tttcattaaa ctgtgtttga tatcagctaa atagaatgca tacggcacca
      241 atatagctca tatggtctca ttcattcgat cacagcagtg ccttatattt tccccccact
      301 tgtgtcagta cccggtatag ctgggtaaat aggagacctt tgaagatata gttagtactc
      361 agatttcttt attcttttgt gctggtttct tagtgttgaa acagtgattc atgtatgtct
      421 cagacagcct ccattaattt catgtaatgt agcttttatc tcgtagctgg gacaactatc
      481 tccagcgctg tctccctata gcatctctgg cgcagcagcc cctccgcctt cc
//
LOCUS       KCLJ01002907             768 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 324068cal ultra-conserved element locus
            uce-1048, sequence.
ACCESSION   KCLJ01002907
VERSION     KCLJ01002907.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 768)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 768)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..768
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="324068cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>768
                     /note="ultra-conserved element locus uce-1048"
BASE COUNT          242 a          127 c          151 g          248 t
ORIGIN      
        1 aaagtagcgg aatgggaact agcactagat cttctgagtc ttgctgccgt gtccccatac
       61 attctagctg ctatggtaac cagttaagac aatcagtaga tggagtttag acattgttat
      121 gtacatgaag tacatttaaa ttcttccatg tacattttcc acagtattaa gggttgtact
      181 ttctttttta gaccagctgc atccaaaaag tattaaataa aacttgatac aggtgatttt
      241 gcagcatgta tacaaattag tttagataaa tcatgcattg tcctacaaac tagttatttc
      301 tggcttattg taatatagct cctgaatttt ttccagcagc ataataaaat ggctaatcag
      361 gtgaatggta atgcggtaca gttaaaagaa gaggaagaac caatggatac ttccagtgta
      421 actcacacag aacactacaa gacactgata gaggcaggcc tcccacagaa ggtggcagag
      481 agacttgatg aaatatttca gacaggtata atatgcattt cttgtttctg attggttatg
      541 aaagtgaggg cataccattt tcaaattttt atagaaaaaa ttcattgttt ttgatctgtg
      601 tagctctgaa tgttttgcta ctttgatttc cctaaaggca aattgggttt gacattgact
      661 aattacttga cacatccttg gagttgtatg tgatatcgta gttgggcaca gagcactagt
      721 ttcttagagc acaaatgaag atgtatgttt ccacatacta aactgtac
//
LOCUS       KCLJ01002908             359 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 324180cal ultra-conserved element locus
            uce-4489, sequence.
ACCESSION   KCLJ01002908
VERSION     KCLJ01002908.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 359)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 359)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..359
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="324180cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>359
                     /note="ultra-conserved element locus uce-4489"
BASE COUNT           89 a          100 c           75 g           95 t
ORIGIN      
        1 atgctcctga agcagcagga gatggccagt gctgctcctc agccccatcc tggcagcccc
       61 tctgccttcc cccttccggc ccagctccca tgtgaaagag gctgtgactg aaatcttaat
      121 gctaccaaga cccagcaatt ggcaccaatt aaattgctac attcatgttt gaattgcttt
      181 aactggcgag acacactgtc ttatttatac aaaaaaatat gtttgcttgt gggtttgtct
      241 gaaccagtgc cagcagaaaa tgcaccattt caaggcctgt gctctgcaag ctcattctcc
      301 tcttccaaac tggaagtcac cttggtttca gcctttgcca agcaatggtg gcagaacag
//
LOCUS       KCLJ01002909             481 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 324283cal ultra-conserved element locus
            uce-2146, sequence.
ACCESSION   KCLJ01002909
VERSION     KCLJ01002909.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 481)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 481)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..481
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="324283cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>481
                     /note="ultra-conserved element locus uce-2146"
BASE COUNT          143 a          100 c          123 g          115 t
ORIGIN      
        1 tttgcttgtg ctctgtcttt tgggaagggc ttctgaggga tccaacaacc tacctccaat
       61 cctgccaaaa aaagctgcag ctccctcaga gctgaagtgg gcagcagccc cttcacagga
      121 actggtctgt gagctaccac cacatgtcta attaatgacc ctgccggtcg cagctggaag
      181 agctgagctg ggggtgatta attaaattag ctggcagagg aaattacagt ggaaaagcca
      241 aagtttgatt gctccataat taaccacagt gcaaataata tctgcatcta taacttccag
      301 ccatgagatc agaagccaat tgaatttggc actgattgaa gctgtaaata tcctgtggtg
      361 aaaaatgatg ggtttgttct gaagggaaaa cttacagaaa tggacatcca gcaatgcagg
      421 aggggagcag gggacaggga ggaaagagca ctggaattag atcctgatct cagctgattt
      481 c
//
LOCUS       KCLJ01002910             492 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 324392cal ultra-conserved element locus
            uce-3336, sequence.
ACCESSION   KCLJ01002910
VERSION     KCLJ01002910.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 492)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 492)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..492
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="324392cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>492
                     /note="ultra-conserved element locus uce-3336"
BASE COUNT          153 a           93 c           93 g          153 t
ORIGIN      
        1 gaacctttgt tttaatacag attatatgag tgcctctcaa agcagtactt tacataaacg
       61 ttggttgatt ctgcatttcc acctagcaaa gagtctctta ttacctttaa attttggtgc
      121 acacaccacc catcattttc ttcctctatt taaaaggtaa cccatatatc tgtcgtttta
      181 ggtttccaaa gactcgtaac ttaattcctt caggctattc atcagcacag taattaaact
      241 agcaaatgga tgtaaataaa gtgaaattgg tttcatgaca gatgagccaa agaggcctct
      301 gacatgaaac aagccaggac aataattatt tctgcaccgg gctatatgag gaactccatc
      361 tagatttatt aggtgctgca agttatttgc tgggagaagg caagacagga ggactcactt
      421 taatttgacg ggatttgcat cctaagtagg ttagagagat aaaaatctgg aattaacttt
      481 ggcgatactc tg
//
LOCUS       KCLJ01002911             382 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 324502cal ultra-conserved element locus
            uce-451, sequence.
ACCESSION   KCLJ01002911
VERSION     KCLJ01002911.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 382)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 382)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..382
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="324502cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>382
                     /note="ultra-conserved element locus uce-451"
BASE COUNT           87 a          122 c           80 g           93 t
ORIGIN      
        1 ccaaacatca taaccatggg accaggtttt cctcctcatc cgacagcaac ttgttcttct
       61 gcagggtggc gggtgccacg tccgtaggtt cggcgatgat atgttacctt gtgagctcct
      121 gctcccacgg tggctgctct atagagggct tcattcctgt gccactcatc taaaaagggg
      181 gaggatgtct acagagcaca cattaatatg cgacacataa ccacgtctct gaatgccagc
      241 cttccattct tcattaaaca aaatggctgg attgcagtga ttgttttccc ctccagcgcg
      301 cacaggcaca cacaccacgc acgcaggcac atacccacac accccccaca cgcactctgg
      361 ctctctcctt ttgtccctca tg
//
LOCUS       KCLJ01002912             842 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 324602cal ultra-conserved element locus
            uce-1003, sequence.
ACCESSION   KCLJ01002912
VERSION     KCLJ01002912.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 842)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 842)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..842
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="324602cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>842
                     /note="ultra-conserved element locus uce-1003"
BASE COUNT          243 a          150 c          190 g          259 t
ORIGIN      
        1 aaaataaagc ctgaattgaa tatattttct aaagaaatca tgtatttttc tcccattcgt
       61 tttacagttg tgcagaatga gcttggaaat cagtttttca tttattcact tctggtatca
      121 tttttaattt gcatcttcct gcttgatgcc tccacttgat gggtacaata tgacaacagg
      181 taatagatac aataacagta aaacagtgat cattactgct gggactagaa acacccatca
      241 ttgccgcttt cctcagctgg aaagttttga catctgctgg tttgggacat agctgaacag
      301 ctgtcagcag tggggtagct gctctcagca gcagttggcg ggatggcagg gtgccagctt
      361 gtaccatctg tgcgcctgac atttcattct aattaacagt agggttaatt gttctggcag
      421 gctcaaatgt agtgtctaac attacccaag ggaaacatgt acaagtgcag gagtggcagg
      481 gagctgggga cggcgttgct aacaaaccta ttgagggaga atggttaaca actactgatg
      541 attttactag ctggccacat gcaataaggc tgaggtattt ttttattctg atgaattatg
      601 ccaagcctgt aatgatgtag aagaaatcaa gctttgaaag gctgagactg ctgccttggg
      661 gcaattgaga gggaacaatt tgcatgttat tactgcatat tcatacctaa ttgtgttagg
      721 ctttgctaat agagcagaat gacagtatga aaaatcgagc aactgcttta tagccaacaa
      781 agctagtgtt ttttccctag tgctgaatga tcatttagac atttagttgt tcaatatgac
      841 aa
//
LOCUS       KCLJ01002913             671 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 324712cal ultra-conserved element locus
            uce-5385, sequence.
ACCESSION   KCLJ01002913
VERSION     KCLJ01002913.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 671)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 671)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..671
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="324712cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>671
                     /note="ultra-conserved element locus uce-5385"
BASE COUNT          194 a          147 c          120 g          210 t
ORIGIN      
        1 attttctttt actttgctac ttccttggag ttaatctgtt atgaaaaatt acttccctta
       61 tttattttta aataacggga gtacagagac tcccacacta cagccctgtg cggagaactg
      121 gctgggtatt tcatcacagc gctgagagcc tgaacgtctg ctaacaggca gttttccagc
      181 tcactggcac aggcacaagt gaaagcagca cattcatttt gtgcaatttg ctttaccttc
      241 ccacatggag ttggtgcatg taaaaggctg ttaagtacta aattattcct tatcaaatca
      301 ccatcatctg gagtcatgat caacactaat taaattactt tcactgaaca cggctccagc
      361 ctgctgcctc aactgcgagg tacattttat tttgcttact gtacagtcct agcaaggtac
      421 agggcacact gctagaaggc atctgtgctg tagttttaat taaagtttac ctcaccttcc
      481 taccagcttt ataagctagg gtaaagtgta tcaaatcaag taggttaaca ccttcacttc
      541 atttagagaa agcattacag accaaagtga ttttatatta gatctttatc ttaactacag
      601 ccagaaagat aatgtagctg taaaatttaa agccttcctc aggcagagtc accatgctaa
      661 gctttatctg t
//
LOCUS       KCLJ01002914             679 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 324822cal ultra-conserved element locus
            uce-7724, sequence.
ACCESSION   KCLJ01002914
VERSION     KCLJ01002914.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 679)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 679)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..679
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="324822cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>679
                     /note="ultra-conserved element locus uce-7724"
BASE COUNT          217 a          118 c          162 g          182 t
ORIGIN      
        1 cagtttatgt atcttttcca tcctgacaga tgtgacaata gctggaaaca ctgtgcctgc
       61 caagagcttt tatcaagtat gttataacaa ctagtaataa gtgtaaataa taaatggcta
      121 cgatcttatg ggaaacggtg gcaatactaa acaatttttg gtgcttgctg atgggagtct
      181 gctagtcctg gaattccctg gcttcccagt agagttttgg cctgacaata aacaacagtt
      241 taatacttta tctaatccca gccaggaggt aagttcaaca gcaagctttt gcagatgttc
      301 acatccaata atctattcat aattgatgaa acagggaggt cagatgtaat ggttgctact
      361 attccagcaa caaataaatg gttattgaca aaacaaggca gtgtggcgct gagtgctgag
      421 cagtgacaag catgaaacag tgctgagaca gaagtagtga tgtgaataca gcccttcatc
      481 tcctctatgt gatgtgtggc accagggcca ctctgacaca tcagcagatg gaggtgactt
      541 gtaaaggaaa agtgagattc tgcaagcaca taaaagacaa aggcagagct gggggaagaa
      601 aaaaagggtg gacaggataa gtgcaataat gtgaattgtt aagaaatgtt ttctgtgatc
      661 cagatgtctg gactgcttt
//
LOCUS       KCLJ01002915             641 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 324928cal ultra-conserved element locus
            uce-1062, sequence.
ACCESSION   KCLJ01002915
VERSION     KCLJ01002915.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 641)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 641)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..641
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="324928cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>641
                     /note="ultra-conserved element locus uce-1062"
BASE COUNT          191 a          168 c          110 g          172 t
ORIGIN      
        1 aaaaccaggg agagaggaaa attaactaag aaatatgcag tcttgatgtt gattcactaa
       61 agaatattta ttgtcctctc acacatcttg cttgctctcc taacaaatat aatactgtct
      121 ctctcgtgcc ctttctctgt ctcaccagct ctgtctctgt ctctctgata ccaactctga
      181 caaaccgtgc gattctgatg gaaaattcat tagtcgtcct ttttcttccc cattttccca
      241 gtcagcttcg cgcctgatct gtcagcctct tccatcctga ttatctggag acgccaattt
      301 caaagagaca tcttaatagt gatgtcaacg aattaattag atgtgttaat gagctaaaag
      361 caacccaaat taaattaatg cagtaataag cacagacagc aaaattagct ccaatttctg
      421 taaatgattc tgaactgtac acaacatctc atcctgctag aacattacca tcccccaaag
      481 ctaatcaaga actccagtgc aattaactgc ttaattacaa aacacacaca cagctcatag
      541 atccagcagc aggaggggtg cgctgggctg ggagcgagcg gggaaattct ctgcaacaaa
      601 cccgccctgc cacagaggct ctgcccccca ggctcctcag a
//
LOCUS       KCLJ01002916             451 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 325035cal ultra-conserved element locus
            uce-3312, sequence.
ACCESSION   KCLJ01002916
VERSION     KCLJ01002916.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 451)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 451)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..451
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="325035cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>451
                     /note="ultra-conserved element locus uce-3312"
BASE COUNT          111 a          128 c           92 g          120 t
ORIGIN      
        1 tacagaaaac tgccgaacac ttaaattccc cagagtaact gttcatgatc acaaatttgg
       61 ctaaaggatt tttttcatta ccctcaaaca tttcctttca cctccaacct ctaggcagag
      121 ccatggcttt ccctttagac cggggaacat aaagccatgg ggccatcggg gctggctgtg
      181 cctgaccccg agggcccttc tgtcaatcac tgcctcccca tcccttgctc tctttcacac
      241 caggcagctg tacccatcgc tgtcaaccag gtaacaacca gcaaacaata gaggcctgaa
      301 tgcctggtct agacactctt ttagccactt atttgctgct cttggcagct gttgaagcat
      361 aaataagcag tttgtaatca gaaagctgac atcattgcag ctcagctgag agggggaatt
      421 gttgctgtgc actgagctgc tttcctccct t
//
LOCUS       KCLJ01002917             514 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 325146cal ultra-conserved element locus
            uce-7494, sequence.
ACCESSION   KCLJ01002917
VERSION     KCLJ01002917.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 514)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 514)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..514
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="325146cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>514
                     /note="ultra-conserved element locus uce-7494"
BASE COUNT          160 a           81 c          117 g          156 t
ORIGIN      
        1 ttctaatcat ttggggaggg gtagcattaa tcttcatgtt tgaagtgatc caggttcgaa
       61 atgatagatt gtttagaagc tgactgaaat tcttctgtag gaactctgtg atcattgggg
      121 tcctcaggtg cactgaggca ctgagaagcc agttttccct gacacatagg cctttttatc
      181 atcaggatga ggtagtggtc gtattttaat taaaatgtca gaacaaatac tgttggagtt
      241 attgaaaatg aatcaccaga taaagtgagc actgggccat ggcaggtcaa agaggcaaag
      301 tcacctggag aagaggactc cattcatttt cctgcctaaa tgaggaagaa gtaactttta
      361 tgagcaatgt gaacttttaa atatattaaa gagcatcttg ccctgtatta aggctcagac
      421 tttcacaggc tgatgaattt aatttatatt tcagactatt cagtatgggt agcacctgaa
      481 ctatttgaca gttataaaaa gatactgaag gaat
//
LOCUS       KCLJ01002918             762 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 325255cal ultra-conserved element locus
            uce-2104, sequence.
ACCESSION   KCLJ01002918
VERSION     KCLJ01002918.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 762)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 762)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..762
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="325255cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>762
                     /note="ultra-conserved element locus uce-2104"
BASE COUNT          201 a          171 c          160 g          230 t
ORIGIN      
        1 ttttccttta agtagaagtt aaaacacctt cctgcagttt tttcatcacc ttaatgtgag
       61 aatcacattg cctgcacagc tccaattatg cacaagtaca atgttaaatg ttaagatgtg
      121 agacattatt tatttctccc ataattcatt tcattttgca agcttctgac tttccaggct
      181 gcaaattctc tccctctctt tctcctattg accacttgtt aaatcttttt gtttgtttcc
      241 cacctttccc ctgggaccta cagacagaca gccttgccag attcattttc tgatcaaagc
      301 tgtttgattt ggtcaatttt gccacattgg agacgttctc tattacagag ataaatagcc
      361 ttgggctaac tgtcaacgaa aacttgtaag ctaataaatt attccaattt cttcctgcgg
      421 atttctctgg agacagccct aggaaataca ctttttgatt agtaaatttc tctgtgtgtg
      481 tgtctggaca ttcaaatgtg tcgactttga ttagcaccat tgcttttcaa gtagacgctg
      541 gctgaggggc tgtcagttgc cggcagccct gatgcataat gcatcaactg ggcccggaaa
      601 caggagcctc atccaaggct ggaaaggcgg gaaaattacc ccagctttgc acggctggag
      661 caatgtgagt tgcaaagact ttggagagca gaggagcctc aggggaggaa aatcagtagg
      721 agcacagaag ggcaaggaca gagccaggca acttgctgcc ac
//
LOCUS       KCLJ01002919             634 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 325365cal ultra-conserved element locus
            uce-6998, sequence.
ACCESSION   KCLJ01002919
VERSION     KCLJ01002919.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 634)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 634)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..634
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="325365cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>634
                     /note="ultra-conserved element locus uce-6998"
BASE COUNT          210 a          134 c          104 g          186 t
ORIGIN      
        1 ctaacaagat aataagtcct aattttcaag ttgccaacat agcatatgca gtactcacct
       61 ttcaaattac aaattagagt gtagggatga ttaaaacatg aatgaaatgc actgcatctg
      121 tcagagcatc ctctcttaca ggtaacaacc tgtctaacat ctctttaagg aatgtagcta
      181 gtttccagag gtctaaagtc aaatacattg acttaaaaag tacctttaga gcaaaccgca
      241 gagctctgta cttggcaatt taaatgactg accattcaat ttatgagcat tctcagcaat
      301 aaaattcagc ctgaacttaa taatagcaca ttttatgtga caacgatgac aattataatc
      361 tatagttacc gcagtcatcc tttggtctgg gggaagatga cactattaat tacacacact
      421 tgccatttgt cagacttaac ttggcaggcg attgagctct gaaccatctt cagcttgact
      481 tctacatttt ccattttcta atccactgga acgaagataa ttagaacaga gaaaaatgag
      541 aggctttcct gacttgttta aaccaaacct ctaccacatt agtggcatat tcagtaacac
      601 cacagtcacc ttaaggctgt gccacttcag ttga
//
LOCUS       KCLJ01002920             528 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 325471cal ultra-conserved element locus
            uce-1349, sequence.
ACCESSION   KCLJ01002920
VERSION     KCLJ01002920.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 528)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 528)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..528
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="325471cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>528
                     /note="ultra-conserved element locus uce-1349"
BASE COUNT          154 a          115 c          124 g          135 t
ORIGIN      
        1 tgtacataca caggcacctt ggtttggctg tctcgtgccc gcaggccaca gtcacattat
       61 catctggaaa ttggataacg acagcacaat gacaaatcca ggttgcctgc aataaggtgc
      121 taatcccttt gctttaatat cggagcagcg tgtaatgatg tttggacatc actccagttt
      181 actgacgacc ccactggggc cggcaataga agcgtacaac tgtctaacaa gccatcaggt
      241 gaccgccgtc gtcaaagcaa cgggggatgc aatctaatct tccctccatc ccttccagct
      301 cccaataagg accagattat agaagtggcc catcaatgct tggtaactcg aatcaattaa
      361 cgttaattca cacaatgcta tgatgtattg tgatcacttt catttcggag aagggggaag
      421 aaattgctat aattcaccta aaatgaggtt gtctatggtg ctgaggtatt aattgggtgt
      481 ccatattaaa tggaaaagga gcacggtagt gaaggaaaag tggatgag
//
LOCUS       KCLJ01002921             815 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 325573cal ultra-conserved element locus
            uce-2611, sequence.
ACCESSION   KCLJ01002921
VERSION     KCLJ01002921.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 815)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 815)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..815
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="325573cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>815
                     /note="ultra-conserved element locus uce-2611"
BASE COUNT          217 a          202 c          172 g          224 t
ORIGIN      
        1 attttctttg gtaaattagc caagtgttta gctatacagg ggatacttgg gcatctgggg
       61 gattttcata actgaagact tgtgctgtat cacaacaaat taagcgtaat taaacactct
      121 gttcagtgtc tattgttaat tgcagcagct aatttgatgc ttagttagtg ttatgttccg
      181 aactatttcc aagcacgcag aattctaaga ctgcttgctt ttttttttac cctcgtttga
      241 cagattttag ctcatttatt acttttgtta aacgatcaga aattcccttg ccaagacagt
      301 actttgaggt ccttcacttt caccaagtca gacactaaat cataggggac aattatcagc
      361 aaatgctctc cgacaggccc taagcctgct gaggtaatgc agctgacaaa ctttgatgcg
      421 ccatgcccgt gcacattatg ttcacgtagt gtgtacatct gggcaccctt tatggcgatg
      481 cagcaaacag ccaatcattt attccactct aattagcaca catgtaaatc ctcaccaatc
      541 aagccactca cagggttacc gttgtggcag ccatacagca agctggcagg acacgggaag
      601 aaagtacaag aagcaactat tgggtttgat ttgaacctgc cgtcacgcca cggcaggagt
      661 cctgactgta accagctctc cccttcacaa cccatcatcg agctccatgc gaaaaaggtc
      721 atcgggcaga ctgccgcccg gccaagatgc tttgattctt tgcaggctct gggagcacac
      781 ctgaagcgac gcgcggctcc gatagctcac agcgc
//
LOCUS       KCLJ01002922             677 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 325686cal ultra-conserved element locus
            uce-1748, sequence.
ACCESSION   KCLJ01002922
VERSION     KCLJ01002922.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 677)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 677)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..677
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="325686cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>677
                     /note="ultra-conserved element locus uce-1748"
BASE COUNT          213 a          119 c          113 g          232 t
ORIGIN      
        1 aatcacaagt tgtcaaaaag gaatgtttat aaactaattt gcattactta cgatttgtgc
       61 ctgtgcaaga gggaacacat ccatatttag tctagggggt aggtgttatt attggctcaa
      121 ttccacacat accaaatgtg aatacttatg ttcttcctac aaatttcttc acattagcct
      181 ttattctttt accgggttcc agatagcaga cagctcttgt ttttcactta tgttttcctt
      241 ttaacaacag tcattaattt actgatatgc tgtctatcag aaccacatca tcttgattag
      301 agctgttatc ctaatcaaaa ggctgataat taagactatc catctgtaga gttccaagtg
      361 ctaagatgag ctgaagatcc taattaagat tatttaggtg ttacttaaat gccatcattt
      421 gattcagcta atcataccag caggtacatt agatttgcat taatgttctg ctgaagccag
      481 cagctcttta aacagatcaa aaatgtagat tacaggcacc attttcaaac atctttatat
      541 caatgtaaca ctgacacaat gcattaaagt aaaattggaa gaaagaggat ttcagtgttt
      601 ctcagtctgc tttatgataa tcagtagagt aagtaattta tgtacttgtg tgtcatagca
      661 gctccaaggt taagttt
//
LOCUS       KCLJ01002923             748 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 325798cal ultra-conserved element locus
            uce-6754, sequence.
ACCESSION   KCLJ01002923
VERSION     KCLJ01002923.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 748)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 748)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..748
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="325798cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>748
                     /note="ultra-conserved element locus uce-6754"
BASE COUNT          223 a          154 c          158 g          213 t
ORIGIN      
        1 cccaagaaga tcataaatac ttttttttaa ttgttgagga taaattgcag caacacaaaa
       61 agcatcctgc tcactccgtg tgcatctcct gctgcttggt cagcacaggt ccactgttcc
      121 atttttaaat caaattatgc ttgtgataat attgtcttga gcttacagtt gctgacatgg
      181 atatcgacaa aggcttagcc agtattttaa taagaaaaca aaatacagga aatactctag
      241 agtttccagg tggatcatta acaagacgcc ttggagggct gagactgcca gccagcacag
      301 ggaatgcatc acagttcgtc atacaactta aacttctttt gacatctagt tatgtcgaaa
      361 tgtgactgat cacctagggg tccaggctcc tgtgagggaa aagttcactg acagacagcg
      421 aacgaagctg atcttaaatg agaatcaaga gaaagcagca ttccagcgtc tgacagtctg
      481 cagctgctac ctgggtctgc ctaacgaaga cgagcctgct ctgctgaaca gttatattag
      541 catctgtatg cttctgtctc attatcacac atctgcccac ctttattcga atgaagcttc
      601 ttctgatctg acagctcagg cattgtcagt gaatagatat tatgggagcc gggtacagaa
      661 gcttagggtg ttagctttta ttttctaaag actgttgtac agtttgacag tataatgcca
      721 cagaggtaaa gaagataatt aacatatt
//
LOCUS       KCLJ01002924             660 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 325908cal ultra-conserved element locus
            uce-6484, sequence.
ACCESSION   KCLJ01002924
VERSION     KCLJ01002924.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 660)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 660)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..660
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="325908cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>660
                     /note="ultra-conserved element locus uce-6484"
BASE COUNT          220 a          116 c          114 g          210 t
ORIGIN      
        1 ttctacttaa attgaaccac tttcattgac actttttggt gtaaatataa ctggctgcgt
       61 ttggcaaaca taaggacttt ttaaacattt tcctaaatgt atgcatttcc cttccttgta
      121 gccaataaaa tataaatagc attttcacgg tgacgaatga catgtagtac agtattctat
      181 gatcatggtt ccaggatttt atttctttta gctttgtata cattaattaa gtatacacaa
      241 tcagggttga gtgcagagac agctaaataa acaaatgaca ctgtagaaag gtctttctgc
      301 atactaatca tatcctacat ctgcaagcaa aagctctata aatcgatttg ctctttcaca
      361 tcaaaagaca aacagtgagg caagtcagca gttcctttgt caaagtcaca gagattgctg
      421 ttcttcacaa atgcatttct acagagctga attcaaccat ttgatgatta gcattattgg
      481 caactcttca aagaagattc atcaagtaat ttgcaattgg attggttgcc atttttgtga
      541 ttctacccca tgaaattgaa caaaaaatga ttgacatttg aattcttact tggaggacaa
      601 agtgaactag cataagaaaa agaagcaagc agattcccaa gaggttgaga agctgctgtg
//
LOCUS       KCLJ01002925             380 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 326015cal ultra-conserved element locus
            uce-4671, sequence.
ACCESSION   KCLJ01002925
VERSION     KCLJ01002925.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 380)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 380)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..380
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="326015cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>380
                     /note="ultra-conserved element locus uce-4671"
BASE COUNT          154 a           71 c           70 g           85 t
ORIGIN      
        1 tgcatcagct ctagttatta aacaattagc ttttagtaaa aaaaaaagca aagaacatcc
       61 catgccatga aggaaatact gagaaacaaa aacgggatag ttactactac tgtgatcttt
      121 gcctagacat agtcgtttca aggtggaccc tacaaggtaa aacaatacaa gacacacaga
      181 attaggtaag actaaacaca acaaatcaga cggacaagct tctgtacttt taagcaatca
      241 gaaagtagtt attatgcaag aaaggacaga caaagtcagc agttcaggtg agtaaaggaa
      301 gcctaaataa ctggacagct caaacctttc ttaatgtgca gccatttaaa agctttggga
      361 agtaccacaa catgccaaaa
//
LOCUS       KCLJ01002926             591 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 326106cal ultra-conserved element locus
            uce-1098, sequence.
ACCESSION   KCLJ01002926
VERSION     KCLJ01002926.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 591)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 591)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..591
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="326106cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>591
                     /note="ultra-conserved element locus uce-1098"
BASE COUNT          188 a          110 c          118 g          175 t
ORIGIN      
        1 attttgattc aatcagaatc cctaaatctg acaacctata atcaaacaaa ggcagtactc
       61 tagtaggtgg ggattaacag aagggaatta aactgtcatt ttgcaacagc ttagaccaat
      121 atgaaagccc atttatgagt ctctcagtaa atatcccttt tgttttgtct aattgctagt
      181 ttgaatgtat cagactcatc aatgggatta gggttaatag atgtttggtc acgcataaca
      241 tgcagaggag gaatctgata cacacacgca caaaaattgc acttaatgag cttagcaaat
      301 gtttgccata tttttaatga accctggggc tgtcatttag aaatgcttag caactgcttt
      361 tccatccttg aaaatagaac aactgaagga cattaacact atgtacacca taaataatgt
      421 gagctattta aagataccag ctgggaggtg ggaatgatga cattttctgt gcaggagcca
      481 gtgatactta acacttcatg tgtgtgttag atctctcaca tcccagacgg gcttctctag
      541 cttcctacag ggaatgggtg cgactttttg aaggagatca aataactcca t
//
LOCUS       KCLJ01002927             539 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 326214cal ultra-conserved element locus
            uce-5307, sequence.
ACCESSION   KCLJ01002927
VERSION     KCLJ01002927.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 539)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 539)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..539
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="326214cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>539
                     /note="ultra-conserved element locus uce-5307"
BASE COUNT          177 a           75 c          107 g          180 t
ORIGIN      
        1 ataatttcta tcctgtacta taagtaattg gctgttctgg tcacagttgc caaaagtggg
       61 taggtttgtg ttcatgaatg agagaaaaca tttgtttctc ctatgatcat cgtgtttgca
      121 tcgatctgaa aaatagtaaa aggaaaggga tgatagcctt tcaaaaacat ataattgatc
      181 gtttggcaga caaagttgtg aacattagtc atagaaacct gcagatagta gaggcttaat
      241 atcaaagcta atgatttatt ttatgttaat gactttctgc tagggcataa aagactgctc
      301 ataatggact ctcagtgttt cagttgcgaa ggctaatggg ataatcttag ccaaaactaa
      361 gctttttgaa gtaaatcatg gtgttttttt tcaaattaac aaatgattct ttaggaactg
      421 cttgtagtct ttataggaaa atgtaagggg acttcaccag cagttttctt tgtattggaa
      481 atgtctaaaa ataatattca agatatgaaa gtcattcagt cacttcaatc atagggcaa
//
LOCUS       KCLJ01002928             575 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 326320cal ultra-conserved element locus
            uce-2817, sequence.
ACCESSION   KCLJ01002928
VERSION     KCLJ01002928.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 575)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 575)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..575
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="326320cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>575
                     /note="ultra-conserved element locus uce-2817"
BASE COUNT          176 a           98 c          108 g          193 t
ORIGIN      
        1 atctatattg gttatttaac agtgatagtg catattgtaa ttgatctaga taaagatggt
       61 aaagtcggca gatgtgctta aaccttatgt ccccatgtag tcatatgggc cagtgatggc
      121 ttaattaaaa tgtgcacctc ctcattgtga cttggtataa caaaattcct atgcatcttt
      181 atttaaagtg tgtatcaaat actgcagata attaagtgat gtccaagcga agaattccgc
      241 tgagtgtgtg tgattgttta cagatttcct tcttcatttg ctcccaaaga atacacttaa
      301 acactcaatc aatgaataac ctacagcagt ttgttgtaga ttcaataatg gggaatggtt
      361 cattgtacca ggatagtcag atatacccat aggaagtgtc agtggtcaaa atgcttccat
      421 tgccagaagg tagtctgaaa atggtctaga aattcaatac agcattgacc ctacattgta
      481 tacatgatct gcagtctgtt cctcaatctt atttgaacca gccattttaa tttatattct
      541 agacttcatt gtctatagct agaagtttga ggtat
//
LOCUS       KCLJ01002929             718 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 326430cal ultra-conserved element locus
            uce-2432, sequence.
ACCESSION   KCLJ01002929
VERSION     KCLJ01002929.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 718)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 718)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..718
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="326430cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>718
                     /note="ultra-conserved element locus uce-2432"
BASE COUNT          213 a          135 c          130 g          240 t
ORIGIN      
        1 atgtgacaga ggttggtcta gattccagat agatgtcaaa agaagacaaa atgtttcctt
       61 gaaaaaatga ggcaagtgtc agtccattaa gatttagcat ttgaggtcct attttctttt
      121 gggcatgaca aaattaattg caaatacatt aacaattaat ccataaacct ctgctgagtg
      181 ccttgcgcgt gaataggata tgtatctctt gaaatccact gcctttccca gagctcaaga
      241 gaggtgtttt gctcttgaaa atctaacaac cagttttgca atgtcaccaa tttttttcaa
      301 tcatccaaat accaccaatt caattaagct cataaacttc ctacccatag ttctctggga
      361 taagcagctc catttaaaag tgaatgcgga cgagcttgtg ctgtccgtgt gaaatattgt
      421 tcaatcaaca gccaaagttt tacttgtcag ttttgatata tccgataata gctgtaggtt
      481 gttttgcaat gtccaatgtt ctgtgaagat gggcttttca tattctttat tgtttttttc
      541 tgacaaaatg ttgcctggac ttttgcagtt ttgtgaaatg aaacaacagt aaaaacaata
      601 tataatttaa ccctcataga cctagctgga ctgcagataa gcatctttcc caggcttatg
      661 gctagttttg gccaggatat aatgagttcc tgttcattga tctcttataa gcatcctc
//
LOCUS       KCLJ01002930             526 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 326542cal ultra-conserved element locus
            uce-7410, sequence.
ACCESSION   KCLJ01002930
VERSION     KCLJ01002930.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 526)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 526)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..526
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="326542cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>526
                     /note="ultra-conserved element locus uce-7410"
BASE COUNT          150 a          115 c          121 g          140 t
ORIGIN      
        1 cagcctcagc acagacaccc ttacaccttg tccacatggt gctctcactg gttcacactc
       61 tacctctctt tgtctttata atcattccag gatcaaaacc tactttctaa tatccagctt
      121 tggttgatga tgatgtatga agcagagaga aaagagacag cttgattttc ataggctagg
      181 tgttgaccct gctgggctta gtgtagcatg aaactagttt tgactagtaa actgaataaa
      241 tataccaggg aagctgtaga agggcaatat atatgcaaca ctaaggtgcc atttttgcaa
      301 aatgactttg attcatcagg gggctaagct gatgcccagc gcattggaaa tcctgtgaac
      361 agggaaatat ttaaattcat aatctgtttg caggaaacag cttcctcttc ttcttctaaa
      421 tgtgaagcca tttggcagag cagctcaggg caaagcccgt gggacatggt gctgccaggc
      481 aacccaaggg atgtggcaag gagaggaaca aaggcctccc tgctgc
//
LOCUS       KCLJ01002931             564 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 326649cal ultra-conserved element locus
            uce-5779, sequence.
ACCESSION   KCLJ01002931
VERSION     KCLJ01002931.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 564)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 564)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..564
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="326649cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>564
                     /note="ultra-conserved element locus uce-5779"
BASE COUNT          188 a           96 c           96 g          184 t
ORIGIN      
        1 aacgtatctg aatttgaatc cataagggaa accaatcttt aggtacgtgt atttaatcta
       61 gaacctatta aaatgcacaa taactctcag cttgctacat ttaacaaaga tctctatttc
      121 aggttgctta gttatagaaa gtccatcaag taagtttact aaagatgtgt tcattggtga
      181 gtctcaatgt gtggttcctt cctcaacgtt agctccaagc tgcgtataaa tcataaaagc
      241 atgactaatt gcatggtaac tggagaaatg ctttctctct ctctggggtg aagcctgcat
      301 gtctgtgttc cagcttggga agtaatacag ggttatttaa actcctcagg atttaaaaac
      361 catgtcatta tgagaatgag gtcactgcaa tattttattg tctaaaacct tgcaatgtgt
      421 aaaatgtttt ctgtctgaca aagaagtatt atgaacctta gaatgcaata ataaatttac
      481 aaatttactt taatgtcaaa acctcgcttg aaatgcataa aaacaatcac agcctatagt
      541 actattaaca ttaaaaatgt tgtg
//
LOCUS       KCLJ01002932             461 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 326759cal ultra-conserved element locus
            uce-117, sequence.
ACCESSION   KCLJ01002932
VERSION     KCLJ01002932.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 461)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 461)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..461
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="326759cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>461
                     /note="ultra-conserved element locus uce-117"
BASE COUNT          158 a           88 c           80 g          135 t
ORIGIN      
        1 ctgctcagtg gaaggggcaa gggctgcaac aacttattta cacaattatc taaatacgat
       61 taaacagctg atggacaaat attaaactgg aaaatgtata gtcatttcag cttaatgtaa
      121 tcccctttct gtaaacaccc aagatgattt tttttcaacc agaacagtcc tgacatctca
      181 taagcctaag ggtgaatagc aagagattgt ttttgatagt tataaatatt caaaagacat
      241 gcagaccatc tgctttcata atacaggtaa agcaagactg aaatggtgac tgctgtataa
      301 aaatggttct tctaacaaag tcttcctctc ctcgaaaact ataaagacag atgtcaaaaa
      361 ctgtttacac agggtaatca ggagcgtgca aaatgtaata ttccttttac acacagtgct
      421 tgctaaagag actttttctt cccatctgtg tgttgcaaca c
//
LOCUS       KCLJ01002933             761 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 326866cal ultra-conserved element locus
            uce-2444, sequence.
ACCESSION   KCLJ01002933
VERSION     KCLJ01002933.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 761)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 761)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..761
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="326866cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>761
                     /note="ultra-conserved element locus uce-2444"
BASE COUNT          209 a          150 c          166 g          236 t
ORIGIN      
        1 ttccatgtgg gagcatcatc aggaaggagg ggttgttggg aaaattattc tgatcaccaa
       61 agtttatttg aggtacaaat gcaattttaa gtgtaattgg ttgttgtgtt gagctccctg
      121 tccactgtga ggaaatcatc attatggctt tcatatggga aggaattcag gagtgccttg
      181 tttacattgc taccatttat aaaacattta aagcagctat tctgctgaat aaacattcaa
      241 gagcctggag gataagcata tcgcttaaac ttcttaagac taaactttcc aaaccatttc
      301 ctgccagagg gacctagcag taaaattgca aactctgtgc tccaagatga gataggcaga
      361 attagattaa gcagcttact gttgacatgt ctattgatct gggttcagcg ccgtttcctg
      421 tctctgctag cagttagatt gctgtgtaca ataacacagt ggcctggttt atgtgaaatt
      481 gggggactcc gagcatcaat tactccagga aggcagtggc actgggagat aaggttaagc
      541 cgctcacagt gtttaagact gctgaaaccc aagcaacata tttgctgtct aaattgctgc
      601 ttataaattt gacagcgttc cgtttatgtt gttccccctc tccaaagaga gatcatcctg
      661 tattgttctc tgcaggtagc agtttggttc tcattataaa cacgcattgt tagttagcct
      721 tcgcttccta tcagcccttt gttaaaagtt ccaaagcatc a
//
LOCUS       KCLJ01002934             697 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 326978cal ultra-conserved element locus
            uce-6169, sequence.
ACCESSION   KCLJ01002934
VERSION     KCLJ01002934.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 697)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 697)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..697
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="326978cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>697
                     /note="ultra-conserved element locus uce-6169"
BASE COUNT          194 a          141 c          177 g          185 t
ORIGIN      
        1 atcagttctg ctgagaatgt gtttgacagc agccagacag gttccctcga acggcacgag
       61 gccggagctg ccactgcttg gaattgggca agacatctct ccaaagctgc tccaaaggtt
      121 ctgatggcca agatttatct tggtaatttt agtctgggcc cattggaagt cgctgctggt
      181 caaagctttc caatgggatg tgagccacac tcagtcgtca tagctgagtt attttgctac
      241 tcagctatgc agaagcagca ggcctttagg ctaattaata aatcatcaac acatttgtgg
      301 tgtgaaaaat gaaatattta tgcttgccag agtaatgttt ctgtcttgca gccccatgct
      361 ctgttgatgc ctgatggagg atgaagtaaa taccagctgg tgtagaatga gcagaatata
      421 attactttct acaaagttaa ctgaatatta aaaatagaat tcagaggata tctagctaca
      481 tgcctgtaag gcaggacgca gccaacacat gaagggaaca cttgcctaac tggtaccgtg
      541 gggctgggaa ccctgcagga tccatattgt gtacaaatgt gtcacacaga ggtcttttca
      601 gagagcactt agtggccagc tggagtagtt aaaaggcctg aagggaagcc aaggatgctc
      661 tgcttttctg gttggtcatc attaggggac cagtgaa
//
LOCUS       KCLJ01002935             724 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 327089cal ultra-conserved element locus
            uce-8032, sequence.
ACCESSION   KCLJ01002935
VERSION     KCLJ01002935.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 724)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 724)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..724
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="327089cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>724
                     /note="ultra-conserved element locus uce-8032"
BASE COUNT          196 a          171 c          144 g          213 t
ORIGIN      
        1 aaaaaagacc aggtgcattt aaacatctac agataaaagc tgccagacac aacaatgctt
       61 cattcaccat tttgaaatgc attgttttca gcctgcttga agggctgaag ggcaccacac
      121 catgaagagt tgcatggcaa tttttaagag catggactta ggaagggcag taggaaacac
      181 acaaatggaa tgtttttaaa caacaagctt atgcatggcc taaggaagtc tttgtctaga
      241 ctacactaca cactggggta ggtacctctt ctttatcagc ctcaatttcc tggtacaaca
      301 atccatatct ccggttagca atttcatctt cagataaatc tgagttgttg gtctcattgt
      361 ctttaggact agttgaactc tcggtgctag catttctgga atttcccatt tgaaacagag
      421 acaagggtct agctatctcc ttgctcggtc caggattgct aatgcctgcc tgctccccag
      481 gcaaaccttg ttttactagt gcctcctgaa ttatgtggcc tgtgcttgca cctacttccc
      541 cccagctgtt atcagcagct cctaggtctt ctgtagacca tttattacta atgcctaacc
      601 aaacattttc catgttacct tcctctgagt tttgctgctt ggggaaaaag ggccaattat
      661 ccagtccatt ggcttggcta tctgacagac tagaaaaacc ccaggaatca ttagtaaccg
      721 ttgg
//
LOCUS       KCLJ01002936             512 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 327198cal ultra-conserved element locus
            uce-4724, sequence.
ACCESSION   KCLJ01002936
VERSION     KCLJ01002936.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 512)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 512)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..512
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="327198cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>512
                     /note="ultra-conserved element locus uce-4724"
BASE COUNT          171 a           94 c           92 g          155 t
ORIGIN      
        1 ccctattggt agagttttta ataggtacat atctttaaaa gccaaaatga ccagtgaaat
       61 taggttgtac atcattttct gggaaaaagg aaaaacagcc tcgacaggtg taatttatca
      121 tttttctgat ttaataccaa agaaatatat taaaataata aaaagaatcc tgaaatcctc
      181 aaaatttgta gtgataaata gccctccctg tctttattgc attatgccta ctaacagaaa
      241 tattgcatgg tggatttcgc cagacaagga cgattatttt ccaataaaaa gttgcatatt
      301 aaattccagc acaaaagtgg gtgtctaata cttttgaaat cttttatggt ttgccaggga
      361 acacaatttt aaacttaact aatacaagct cagggtgaag tgaagcagca ttgaagctgc
      421 ggcacaaccc ctccaagcag cagagcaacc atcctcagag ttcctctgga gtcatttttg
      481 gggtatttct tcagctgaac tttgcactgc tg
//
LOCUS       KCLJ01002937             683 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 327307cal ultra-conserved element locus
            uce-491, sequence.
ACCESSION   KCLJ01002937
VERSION     KCLJ01002937.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 683)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 683)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..683
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="327307cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>683
                     /note="ultra-conserved element locus uce-491"
BASE COUNT          222 a          131 c          115 g          215 t
ORIGIN      
        1 cagacctgtt gtcctcttac aagctgcaaa ttacacaggc aaatgtaatt acccattctc
       61 tttgtcatta gtgtgcagtt ggaagcttca agcaatcgtc cctatttcaa agcttactca
      121 caagatgcat ccttgatatt gaacacaatg agattttttt tttttaaatt caattaaaca
      181 tttgcctact gtgactcttt attcactgca aattgtctct gtaaataatc ttcatcaaaa
      241 gtcagaacca atccccatta gttgtttaga ttaattaatg agtccccctg gagccaccca
      301 aatgaattca atttaaacgt caacaacttg gctatggagt ttcccaggtt ggcattaaga
      361 caatattaaa cctgcaataa gtcacattta aaatgttaat tcaaagaagc tctccattta
      421 gagcatttaa ttaaatcctt aaataaactg catgggctca ataccagatg gttctgcatt
      481 ttcattgcag cagagagcct tgaagtcatt gagggaagta atattggagg catggtgaag
      541 ataaccagga tatatagtgt aataaaatct aatcttgttt ccagcaggga gattcagtgt
      601 atgtacacaa cctaggctaa aattgtaagt taattacatt aaccccagtg tactctggta
      661 tctgagcagc cagagatgaa att
//
LOCUS       KCLJ01002938             753 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 327420cal ultra-conserved element locus
            uce-680, sequence.
ACCESSION   KCLJ01002938
VERSION     KCLJ01002938.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 753)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 753)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..753
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="327420cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>753
                     /note="ultra-conserved element locus uce-680"
BASE COUNT          218 a          159 c          152 g          224 t
ORIGIN      
        1 gtttggaatg gctctggtgt ttttcctagc tatcctgtgg ttggagtgaa gttatattct
       61 atgtcaactt ccatggaatt ttagtgctgc cttgggaatg cattatcccc aggcataaaa
      121 ggttccataa agggtaggtg aactccggcg ctgtttaagg aaatcagtga ataaattaca
      181 aaaactgtcc atttgcccgc cccttttaat cttactgtcg tattcaaact attgggcatg
      241 taactgaata tctcaactgt acctgaagaa ataatggagc gtgtctctgc agtaaaacag
      301 aacggcacta aactgatgag tttaacccag cagaaagagc ggctgtaaac atgacaaatg
      361 cctgctattg atttcaggtt taattactct gtgcagcact gacaaagccc atcagatgtt
      421 gttgtgaagt gtaaatggaa caaactacac ttcactgccc ataggaaact gatggtgtct
      481 gcagtttgca ttgtttactt tatcctccgt aaacttcagc cttgatcaaa ttaacaagtg
      541 ctactaccct ccaacaaact acaatgcact atgattttac agcaacagcc ttggaacaat
      601 agctctgcag catttcattg ataacaaatg tccagctaat gacagcagct gttgaacctt
      661 gtccatcatg gcatggcctc taaccaggct gggaaggatt ttattctctt gcgtttcttc
      721 ccacttgggg ggaaagatat tctaataaaa ctt
//
LOCUS       KCLJ01002939             867 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 327531cal ultra-conserved element locus
            uce-752, sequence.
ACCESSION   KCLJ01002939
VERSION     KCLJ01002939.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 867)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 867)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..867
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="327531cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>867
                     /note="ultra-conserved element locus uce-752"
BASE COUNT          265 a          150 c          118 g          334 t
ORIGIN      
        1 ttgaatttaa tttattatta ttaatctatc tacattttaa tcaatttaat atattgagtg
       61 tgctttgttg tgtaattcta gttcatagaa ctttttgtta ttagacactt cttcaattac
      121 atgtaaacat tttaggaaag attaaagtaa tttctattta cagttagtgg ctgtctgtac
      181 tcctgctgca gtagagatta taggatataa tatgctacac catatgttta aaggccaata
      241 atgcaacttc taatcccact ctggctaatc aagctgctca gattatttta catacatctt
      301 tggtttaggc cttgacatgc ccttgttttt ctttcttctc aaagctaaag ttcccctctt
      361 tgattagctg aaacatttgc atggtcacta cacatttttc attttataaa tcattatgca
      421 ttagcagtct tgatcgccta gcttgactaa tcctgatgaa ctgaaatcac agctgaaggt
      481 caaactccat cccactgcac attcatattc aaacaaatct gcagcattgt tcattagact
      541 tctaaaatca ttgaaaagaa gttactgaat atcttaccct tattctttat gttttccaaa
      601 actttatcta caatgcttaa cagatgataa tagcagaata atgtcaaaat caatacaggc
      661 ttggagtgct taattttatt gaaagttgta caacctagat cttaatcaat atgtgtgtca
      721 gaatatttct ggtgtttcac tgattatttt gctttgttca tttaaacaac ccttattatt
      781 gcatatctta aatgaaaaaa cttctattat aattacgaat tgggtctatt ctgcatatag
      841 catgctttgc agttttacat tgttaag
//
LOCUS       KCLJ01002940             607 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 327641cal ultra-conserved element locus
            uce-3869, sequence.
ACCESSION   KCLJ01002940
VERSION     KCLJ01002940.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 607)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 607)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..607
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="327641cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>607
                     /note="ultra-conserved element locus uce-3869"
BASE COUNT          154 a          124 c          110 g          219 t
ORIGIN      
        1 ccccctcccc tcttcaggaa caaatagaca taactgtttt ttgtgactag atacgagttt
       61 gaagtaattt tgttcttatt ttgttttaca tgtccactct tttgaccaat ttataaggtg
      121 tgttttacat tgattttgtt tgataagaaa tttttcaaac aactgcatag atctaattct
      181 tttcagatct tatatatatc ttctgaaaat attcatcatc cccctttctt tggcctctct
      241 ttttagtctt ttcttctgtc tcctatcttc ttcttaggcc atgtttgcca gctacgtccc
      301 tgaaatcata gagttaatag gaaaccgcaa gaaatatggt ggttcctata gtgcggttag
      361 tggaagaaag taagtatccc aagaggctct gctgcctctg ctgcagtaga acactctctg
      421 catgccattt tctttttttt tttttgtgtt tttgtttcat gcatgtaggc aatgtttgct
      481 cgctacgtgc cagaaattgc tgctctcatc cttaatcgga agaaatacgg cggaactttt
      541 aactcaaccc gaggcagaaa gtaagtccaa aaagaccagg tgtggaaaga gcccctgaag
      601 gtggtaa
//
LOCUS       KCLJ01002941             491 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 327747cal ultra-conserved element locus
            uce-5075, sequence.
ACCESSION   KCLJ01002941
VERSION     KCLJ01002941.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 491)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 491)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..491
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="327747cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>491
                     /note="ultra-conserved element locus uce-5075"
BASE COUNT          151 a          106 c           91 g          143 t
ORIGIN      
        1 ttttctttaa taaatcaaaa ttgaatataa ataacacttt gcaattatga gtgtttaaat
       61 tccaaatttt ttaggctaat cactttcaga aacaaacaag agattgaatt tatatcgcct
      121 gcagttgtta ttggaaaggt atgcccagag atggctaaat taagtcagtc ccagtgcaat
      181 tatgatcact caagcatgct ttcaacgtat cgtgccaaat taggtagatt tgagcaattt
      241 gacttcctgt agcaaatctc cagggcactt ttgagaaagc acagactgtt tacaaacact
      301 ctcaggtttc ccggggttcc gaggcagcgg ccagcggcag cgcccgagca cacacctgtc
      361 aaagctgacg gccccctctc cgtcctgcta ccctttagca atttaaaaac caaaagaagt
      421 tttaattgcc ttggactcag tcttttgaaa accaaaatgc tgcaatctgt taaatgtaaa
      481 tattgtcggc t
//
LOCUS       KCLJ01002942             687 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 327857cal ultra-conserved element locus
            uce-4456, sequence.
ACCESSION   KCLJ01002942
VERSION     KCLJ01002942.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 687)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 687)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..687
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="327857cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>687
                     /note="ultra-conserved element locus uce-4456"
BASE COUNT          177 a          131 c          130 g          249 t
ORIGIN      
        1 agaaaatgat ttcctatttt gcataaattt tttgcggttg cttttttccc ttctcgcagt
       61 gtcacattag acaccctggt tatcaaagtg atcgtatcgc tatggtatgt ctcataatta
      121 tgatcaaact gttatctaac attcctggag cattcttttt ttcaatactt aatacctttt
      181 attccttggc ctcatgcatg aattatgctg tgtatgtgaa gaggcttaaa gtttgtttcc
      241 attacattct ttctgaatgg atcctgttgt atctaggatt tttttaaagc caagtaggaa
      301 tgttattgtt gaccttgaca ccagataact gggcagacat tatatagcta tgtttgaatc
      361 ctcacaaaat gtgatgctaa agccaacaga atcctggcgc gagaccctcc tggacagcag
      421 agttatggag cttttcttta cagtaagttt ctttcttcaa ctttcatagt ccagagggaa
      481 agcagctcct tcctgttcta aaaccgtgtt gttggactct tccttttgca tcaggtagga
      541 ttgattctgt tcacttcagc ttgcttacct aagcagaggg tactgaactt gtattttgcc
      601 tattaattgc tttaaattgg tgacctttaa tactttgtac tcgttagaca aaagcaagtg
      661 cgatgagcac tagtatcaga taaggtg
//
LOCUS       KCLJ01002943             598 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 327970cal ultra-conserved element locus
            uce-3488, sequence.
ACCESSION   KCLJ01002943
VERSION     KCLJ01002943.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 598)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 598)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..598
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="327970cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>598
                     /note="ultra-conserved element locus uce-3488"
BASE COUNT          171 a          161 c          101 g          165 t
ORIGIN      
        1 tgatagggag actctttgcc atgtcccctt gcactgacac tgctagaatg gggcctgcta
       61 ccctcttaat taaaatgtat taccttccac aagactccac tattttaagg taaaatttac
      121 atcttttatt aactcacctc acctatacac ttagctctga tgcctctcgc cgcccatctg
      181 ccatccacat acagtgagtc acttgatatt ccacccacca atttttccta acaaccactg
      241 tgcaattaaa ctcaacacgt tctgttgcga ggtaaattag gcacacctgc ggccagcctg
      301 catttgaacc gcatcagaaa aggacctaac aaggtgagag cagtaccaca aagttatagg
      361 cctgtcaagc aattaggttt tcacttctgg gacatccgca cagtgcaatt atgctacaca
      421 ttacaacctg gctaatcttc tgaacaaatg tcatgtctcg gagaagcgag gaaaagcagt
      481 tcatctgcaa atgtggctgc tcttaagcct ccaccttatg cacataacaa cctacaggag
      541 acaaatgaaa gatgtttttt aaaccctgca agtgcttttt catcctgttc acctcttc
//
LOCUS       KCLJ01002944             565 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 328081cal ultra-conserved element locus
            uce-7739, sequence.
ACCESSION   KCLJ01002944
VERSION     KCLJ01002944.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 565)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 565)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..565
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="328081cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>565
                     /note="ultra-conserved element locus uce-7739"
BASE COUNT          146 a          142 c          115 g          162 t
ORIGIN      
        1 tgccctcccg tcctcgggca ggagaaatcc ttctctcctc ccgtcccttt tttggagaac
       61 ccggaccaga gccagagaaa ctttgcgtgt tcgcaccatt tgttgatatc ccctgcctta
      121 cttttgcaca ggcactcggg gaacgtctgt ttctatttga aaccgtcaaa attagcattc
      181 agtaattaaa aatcacaccc tttctcttaa taacctaacc agcatgatac aatcaggttg
      241 tgccaactct ttaatctaat tgactaatta cagattttaa tttagtcagt tactgaacaa
      301 ctgttgacaa tttgttttca ttagggacag aacaggataa atatttaggc tccccagtca
      361 aagactaaga cataagctct gggctctgac ctcgggtttc acaatggagc cttctccaag
      421 agcatcaccc gtggaaaggt gctgctctgc aatgccctgg tcctgctgct ggggttgctc
      481 tgcctgacag ccagtgttgt ttaagatata atataatcca cccttgcatg gtactccagc
      541 aagagcaggc tttactggga gggaa
//
LOCUS       KCLJ01002945             731 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 328190cal ultra-conserved element locus
            uce-1643, sequence.
ACCESSION   KCLJ01002945
VERSION     KCLJ01002945.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 731)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 731)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..731
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="328190cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>731
                     /note="ultra-conserved element locus uce-1643"
BASE COUNT          176 a          166 c          199 g          190 t
ORIGIN      
        1 gaaggttagc agcctgggaa gggttcacgg aaagttcact cgcatatatt aggcaattca
       61 atctttcatt ccctgtgaca caagtagtag gaagtgagct gttcagaggc agaagcatct
      121 attcacggcc gagggggatc ccgcgcctcc accggagctg ttttatcccg gggaggtggg
      181 cgattggcac ggcgtgggac gcggcgcaca cccggcgagc gcctcaggag ctggactgac
      241 tctcaagaaa ttttttgatg gtagctaaaa cttggaatgc ggctcgcatc cccccatctt
      301 gctggattgg ctgggcagcc tggaaaatgg taaatgatca tttggatcaa ttacaggctt
      361 ttagctgtgt tgtctgtcat aattcatgat tctggtctgg gaaaaagacc aacagcctac
      421 gtgccaaaaa aggggcagag tttgatggag ttgggtgtac ttttatgtgc cattttcctc
      481 cacacctaga ggaaagcact tttgcaggca ttctgtgcag ggggaatcat gtttgactgt
      541 atggacgttc tagcagtgag ccctgctcag atgctggatt tctacactgc gagtccgtct
      601 tcctgcatgc tccaggagaa ggctctcaaa gcatgcttca gtggattggc acaaacagag
      661 tggcaacacc ggcacagtgc tcaatgtagg tcccaactgt tatttttcca ctttaaagca
      721 attactatta t
//
LOCUS       KCLJ01002946             522 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 328301cal ultra-conserved element locus
            uce-7299, sequence.
ACCESSION   KCLJ01002946
VERSION     KCLJ01002946.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 522)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 522)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..522
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="328301cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>522
                     /note="ultra-conserved element locus uce-7299"
BASE COUNT          166 a           79 c           88 g          189 t
ORIGIN      
        1 aagttggctt gataaacccc cattggtatc ttcagggaac aagtagatta aacaagtaat
       61 tataccataa ggcttttaga agttagtaga tttaaataca ttgtatgaat ctcatcttaa
      121 tgtagccttt tgtctatagt gcttcctgcc aacctcctga caggaaataa acattaaaat
      181 aatctttaat cccttgtctg gtctattacc attaacaatt gatgcacttt aattttgtgg
      241 gattttaact acaaaatgga atggctaagt agtgataatt gggtttggaa ttatacggtc
      301 atttatatca acagaaatgc aagtggctgg gagggtgatt aattatttaa catttcctgg
      361 ctgtagttcc tattatagaa ttttctgata tattctgctg tgaacaatta tcaccaaatg
      421 aggataaaca aatctgtgat gtgaagtcct atttataaat taaactatat ttagaaaatg
      481 tctatttcat ttgcattttc cctttctgct tgacagtact gt
//
LOCUS       KCLJ01002947             727 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 328406cal ultra-conserved element locus
            uce-3703, sequence.
ACCESSION   KCLJ01002947
VERSION     KCLJ01002947.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 727)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 727)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..727
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="328406cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>727
                     /note="ultra-conserved element locus uce-3703"
BASE COUNT          186 a          121 c          149 g          271 t
ORIGIN      
        1 gtcttaataa ttgtactggt ctagtttcta catgacaaga caagggtgaa cattttcagt
       61 ggctggtgga atcttaactt tccatgaact agtacaaaaa atactatcaa aaatgcccca
      121 agactgacgt tccattgatc aagatacaaa gcaaaacaag ctgtccaatt cagaaatagc
      181 ttccaacaac attgtttgga cctaacaaaa gaggtgctat agcagtcatt ttcttttgtt
      241 tgcttgatca ctggaatttt gttaatttta atgcatgtct ttcacttaat tgggtcatgt
      301 tttttctaaa attcaaattt ttcttcttcc tatagccctg ccataggaca ggctgaggca
      361 gagtctcagt gttgccctgt tcagtctgag gcaagtggga tttattttat tcattctggg
      421 ggctttcaca gctttatggc tgttggatat ttatgtcccc aaacttgcag caagtttggt
      481 gaaggcccct aaatttattt taatttagga ttctcttttg gtagatgggc tctatatttc
      541 tttttattat gtttttaaga gtcaaggggg gggaatttaa gatgtgttac cttttctctt
      601 aatggaatgc atttccttca aggctgctca ggtagtcctt aagatgcatt gcatttgtgc
      661 tgtatttggt tttgggtttg gtagtgttca ttttgtgtag tttctgaatt agtggcatgt
      721 aaatacc
//
LOCUS       KCLJ01002948             726 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 328520cal ultra-conserved element locus
            uce-2163, sequence.
ACCESSION   KCLJ01002948
VERSION     KCLJ01002948.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 726)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 726)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..726
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="328520cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>726
                     /note="ultra-conserved element locus uce-2163"
BASE COUNT          208 a          133 c          155 g          230 t
ORIGIN      
        1 cacaaacctc tatttccaat caaaatttta aactgatctt tctgtagcat ttacactgac
       61 aagcaagtgg gttttaataa tttacccatg ttgctgcaaa gaggggggga aggactgcaa
      121 gtttaaaaca cgaaggagaa aagttaattt aaagtgatgt ttggtaaaaa gtcccctttg
      181 agatcctgtt gtgtaattga acagattaag agaactgaca gtaacttcac ggtatgccta
      241 agtggaggtc tctacgggtc aactctcgga tcttgtgccg acacgttaaa caagtttgtc
      301 aattttccat cagattgatt tttctcacag gtctggaagc ctcgtctcat ttcatcttat
      361 ttccacaggg gtccttaaca ttgcaaactg ccatttactt ttgtctcaaa gtgtgaggaa
      421 tgatttttat ctctgagtgg caatcacggc aggcagctcc agcactgctt ataatgttgc
      481 acattgtcct ccctcaccaa ctggggtttc ttttgtgttt ttcccctctt tgggaatgat
      541 gtggattttt agaatacatt caaaataatt attaacagaa tgtacttagg gcagatgtct
      601 gtagtctctg aagtgaacaa aaaaagcaac agaaaccgtg gggttttttc tttgcagttt
      661 tcagcataat gagaggtcag cttgagaaaa tatgatgtct ctgggaaggt cacagggaag
      721 agtatt
//
LOCUS       KCLJ01002949             538 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 328633cal ultra-conserved element locus
            uce-7102, sequence.
ACCESSION   KCLJ01002949
VERSION     KCLJ01002949.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 538)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 538)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..538
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="328633cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>538
                     /note="ultra-conserved element locus uce-7102"
BASE COUNT          160 a           90 c           99 g          189 t
ORIGIN      
        1 ccaaacaagc ccaacattct ttatttattt gttatgaaat atttatggat gttatgaaag
       61 gtttaaaata attctctctc tcccctctta tttttgccct ggcacagtgt tttctaatgc
      121 ataaataatt ctggcctgtg gacagtggga cagcacatta ggtgggatgt atccgctgta
      181 tcacattctt tctgcctgag agaaaatatc attcctagta attttctaca cttatacaat
      241 ctgcgttgac agtaaataat tgatgtatga atttaggact aaactccaac acaatatgac
      301 tttatgtcaa gggttactcc cagcagattt tgagctaaat catcttgcaa aatggattct
      361 ttcagtggaa aaaggaaaag gctttttgaa attattttaa tggaaagatg ggacctctgc
      421 atagtgcttc ttttgatgag gtcttgcttt gcatggctgg taataaaact gagcaatcta
      481 cccattatga gattggaaat gtttcatttg tgatcacaaa tggatttttt agattgac
//
LOCUS       KCLJ01002950             485 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 328742cal ultra-conserved element locus
            uce-6627, sequence.
ACCESSION   KCLJ01002950
VERSION     KCLJ01002950.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 485)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 485)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..485
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="328742cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>485
                     /note="ultra-conserved element locus uce-6627"
BASE COUNT          147 a           82 c           99 g          157 t
ORIGIN      
        1 tgtgtgtgtg tgtacatgca caggcttagt cctcaggtgg aactgtggtt cctgtgcttt
       61 cgttctcgaa gctgttattc tggaagggaa tggaggcagc tgtgtttaca gctcaagtct
      121 tggcatacat ttaccagaat ctattattca tatcgttcag tatcagggag agatctcagg
      181 ccacctgtct atctgacaaa ttcacccttt tgtgagcttt ctgttcatag caaattatgt
      241 tcacattgat gaattgagtt tttatgagca ttgctaacta acattctcac agaaggccag
      301 gggcaataga ctgcaagtgt ttctggtcca caagtaaatg ttaaaaagct gccagtattt
      361 aaagacaatt tgccatggag ggatagttaa aatatttggc aaagtcttga tatttataaa
      421 ttcaagaatg tccataaatt attacagata gtatacttat cacagataaa aaataaaaat
      481 aattc
//
LOCUS       KCLJ01002951             780 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 328831cal ultra-conserved element locus
            uce-6966, sequence.
ACCESSION   KCLJ01002951
VERSION     KCLJ01002951.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 780)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 780)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..780
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="328831cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>780
                     /note="ultra-conserved element locus uce-6966"
BASE COUNT          229 a          153 c          141 g          257 t
ORIGIN      
        1 tttttcatac taaaatatca accagaagtg ttttgtcagg agtctttatc ctgctacgtc
       61 cttcatatcc cttggcatta ataaacacca ttaataagct aaagagaagt gactgatgta
      121 ttccacagta ttattaaatt gttggtaacc aaggcaggta tgttggttag gcttcttttc
      181 catgggggat gaagagggac ctgtcccttt ttaaccactt gctctgaatg acttttatac
      241 ccaatataag tgagaaaaga ggatgaatgt cacctctctt ctctttctcc tcctgtcgat
      301 gcatactcct tcttttgatt gacagctact aataaccttc ctgccctaag tgccatggag
      361 acactttatt aggacaaaca gccaaggaaa tctaggaatg aagccaagcc tgcagtgagt
      421 tattatcggg cttgtattta tctcagcttt gtaagtgata tgcaaatcct gaaatagatc
      481 ttcttctgtt gaaggacagg tccctctgtt aattgatcca ctgagattca gcctaacctc
      541 ttttagctat cagccaggga aacaggctac ataaaagagt ctcagtgctg tatacagttc
      601 acataaattc actgtgcatt ctacaaggaa aacttctgca cagaaaatgc atttttagtt
      661 cctgaacata ttttacatat cagtgttatc tgcataacag atcaaactga tttgtttatt
      721 tgtttattag atatgtatga ggatacactc ttataatcaa atgcgatttt agatggagct
//
LOCUS       KCLJ01002952             772 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 328944cal ultra-conserved element locus
            uce-953, sequence.
ACCESSION   KCLJ01002952
VERSION     KCLJ01002952.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 772)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 772)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..772
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="328944cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>772
                     /note="ultra-conserved element locus uce-953"
BASE COUNT          259 a          159 c          115 g          239 t
ORIGIN      
        1 agtaaactca gctttgacct aagaaacacc tcaaggcatt aaaatttcaa caggcaatgt
       61 cagtgttaca ttaaacaaga actcctccag ttcgctacag agctgggatt tgaataaaac
      121 gttcaatgtt aacaaacaat acacacgttt ggcactttgt gtattaaatg gatcaaagag
      181 atttgataag gcacaataca ccatttgtac agacctgatt gagttaatat aatatcagca
      241 aattttacaa cgaaatgaat ctgtttcttt tctttgtgtt taaaaccagc acagattaca
      301 aattttaatg atctgaaaat gtttggtata caaaatcatg cttatttcag tattagcaaa
      361 aacacaagaa atttttcaac acaaacaccc agctgtgtct attttaaaag cagttcaatg
      421 acagcttgca cttatgagca tgcaatcagc taatttcgct ttttttttct tctgtgttaa
      481 tcaacacttt ccttcctgca tatcagagta caaatagtat agttactcca catcagtaaa
      541 tgtttacgta acctgtcctt tctcaagaat ctggttacac cgaatcatta catgctagac
      601 cgagtaggaa aacgcactgg gcccagccac cctaatgggt gcaccataat gacacatatt
      661 agttaatgat catcataatc ataataatat gcaggaagct tacctttcct cttacccctt
      721 gccatggtag agtcgtataa tatcctcctc attgcattct tcgtcaagaa at
//
LOCUS       KCLJ01002953             589 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 329056cal ultra-conserved element locus
            uce-4788, sequence.
ACCESSION   KCLJ01002953
VERSION     KCLJ01002953.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 589)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 589)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..589
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="329056cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>589
                     /note="ultra-conserved element locus uce-4788"
BASE COUNT          181 a          102 c          113 g          193 t
ORIGIN      
        1 gtggctcagg gcagccacct tctctccaca cccccgctcg gcggcgggac atcaaggcag
       61 ggccgaccga cgaggttaat taggaggctg aaattataat gttgtgttaa agaacaaagc
      121 gtctccaaag gaaaaatatg tgccgcatat ctgacaaaga taaattggat tattcaaaat
      181 attcctgatg aaatgttaca ttttgcaact aattatcaat ctgttttatc tccggaccag
      241 ctgggcattt ttgtgcatgc aagacctgcc ttaccaatga tcttaagatg tcactgtagc
      301 gtttacatct tttatttcaa gatttaaata actaggaagt agctaatgta attcactgct
      361 gagaagaaag gctagttagt tgaatgcttt ccaaagtgat cttttcctaa tgaacttctc
      421 tggactgtga gtaatgaggt tttattcaaa taatgtttaa aaaaggtttt tataatgtaa
      481 ttttttaaag aaagagcaac gtttaatgca tttaaaatat ctttattaat cctatactgc
      541 ctcatgtagc attaaagcat tgtgaatatt tggttttgtt ccttctgaa
//
LOCUS       KCLJ01002954             684 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 329163cal ultra-conserved element locus
            uce-1034, sequence.
ACCESSION   KCLJ01002954
VERSION     KCLJ01002954.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 684)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 684)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..684
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="329163cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>684
                     /note="ultra-conserved element locus uce-1034"
BASE COUNT          197 a          145 c          104 g          238 t
ORIGIN      
        1 aaggcaataa taatatttca tatatgaatt ccagcttagg agctcaacaa agtgaagtca
       61 cggttattgt ttttttgctc cttcacagag cttttcaaag gcactcactt ttgcataagt
      121 tgtaagttta tgttaaagtc ctgtgttagt ctgtgttaca cgttttagtg tgttctgtac
      181 tgccctggga gctaaccccc ctcccccaaa gaactctttc tcagcccctt catctgtaac
      241 ctttctgcaa gtaaatgcta attgaaaaag aaagaacacc actaatcttg gaatttaaat
      301 gcatttaaca aaaccaatct caatctaaat tgttgtttca ccattccctt ttccccaaca
      361 gatgtcgaga aactgcaatt cctattaaga acacttgact gtttactcag caagagaact
      421 tcaggctcag gctgcatcaa tctaaatgcg tttcaggacg tcagtctttt gaaaagtgca
      481 gactgttagt tggttatttt taaatgtaat cttcacataa aagagttgct gcatttttct
      541 tttcactttg tcatccatct ctccctcctc ccaatgataa catcaaatat agatgtcctg
      601 aatttttatg tcccattcca tttagtttta tttcattttt gtttttgacc aatgaaacag
      661 tgaagactgt gaacattatt acag
//
LOCUS       KCLJ01002955             775 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 329276cal ultra-conserved element locus
            uce-8044, sequence.
ACCESSION   KCLJ01002955
VERSION     KCLJ01002955.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 775)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 775)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..775
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="329276cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>775
                     /note="ultra-conserved element locus uce-8044"
BASE COUNT          253 a          132 c          174 g          216 t
ORIGIN      
        1 gcacaaaggc agctccccaa cgaattggtg acaagagtaa aaaggcaatc tagcctgtgt
       61 aagctttaaa tgtggtctga attttacaat tacatgtcct aaagcccatt attagacatg
      121 agggcgatga gaaggaaagc agtcattgca tcactactaa caccaattat aggaaacata
      181 aatcattcaa atttttgtac tttaataaaa atcagcctga attggtgaaa aggaaggatc
      241 tagtatagga gcctaatggg aaagaagaaa atagagtaat tggaggctgc tgtcttttca
      301 ttttctatat aaaattattt gaagagacag ccaagaactt taaacagcag aaacccggaa
      361 aagttgtaat ttggatgtct tcagttgtga ctttaatggt gtttgcttaa agagctttct
      421 tttatctctg cagacatact tcaatgacaa tatcctcaca ctgatacgga cattggtaac
      481 aggaggagcc acaccagagc tggaagcact gattgctgag gaaaatgcat tgagaggagg
      541 ttacagcacg ccccagacac ttgcaaacag ggacaggtgt cgagttgctc agttggcttt
      601 gtatgatggg ccatttgcag acctaggggt aagatcatga gggaaatgca ggaccaaggc
      661 tggtctgtgc tcttttctct cagactatcg caataagcat ataatttcta ttattgaatt
      721 taatagagct tttggattgt ttaaaaattt atagcagaga gtgccagatt tgctc
//
LOCUS       KCLJ01002956             246 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 329388cal ultra-conserved element locus
            uce-3714, sequence.
ACCESSION   KCLJ01002956
VERSION     KCLJ01002956.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 246)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 246)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..246
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="329388cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>246
                     /note="ultra-conserved element locus uce-3714"
BASE COUNT           48 a           68 c           49 g           81 t
ORIGIN      
        1 ttttttctct ccaagtgagg actaatccca tccctgggcc tgctctctgt tcccttcctg
       61 cattagagat tggctataag gagaaggctg acggctgcag catgaagcgc attattacct
      121 tgtgattcca tgaccctcct ctatgcatcc ctaactctcg aaagctgatt cagctttcag
      181 ctagtgctct ggtgagtcct ctgctgcaac agaagctcct aactggtatg tcttcttttt
      241 ttttcc
//
LOCUS       KCLJ01002957             419 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 329490cal ultra-conserved element locus
            uce-2926, sequence.
ACCESSION   KCLJ01002957
VERSION     KCLJ01002957.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 419)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 419)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..419
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="329490cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>419
                     /note="ultra-conserved element locus uce-2926"
BASE COUNT          124 a           77 c           65 g          153 t
ORIGIN      
        1 ctcattgtct ctatcccttt cccaccttgg gattgctgta aatgcctgat caaattctat
       61 ctgctgctct ttagaaccat gggataacca ctgaggcttc tcacatcagt gtttctttat
      121 cccttttata agtattagag tttgacattg gatgacttta taaaacattc aactaattgg
      181 atttgttaaa ataaataaat caaacactaa ttggaatgtg ccctgccatt atttttgctt
      241 actgaattag atattatagc gtgaagttct ttttatcata tttgtgcact tatttaaaca
      301 ctctgcaaat tcaattatat attcaaagga gccattcaat ttatgcaagg ctggtttaca
      361 tataatccag gggcaagtct cagtaactga tgataggtct gctcaagatt aattagcat
//
LOCUS       KCLJ01002958             575 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 329593cal ultra-conserved element locus
            uce-7788, sequence.
ACCESSION   KCLJ01002958
VERSION     KCLJ01002958.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 575)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 575)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..575
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="329593cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>575
                     /note="ultra-conserved element locus uce-7788"
BASE COUNT          195 a           96 c          125 g          159 t
ORIGIN      
        1 actttatcca ggctctatga tgtacaatgt cactgtagca gagcacttcc tctttgttct
       61 gagagaactc gattcataat gaacccatct agagtgtacc cggattgtga taaagagctt
      121 tacacagagg gccttatttt agagaaacag gtgttggcct tgattagaga aaattacatc
      181 attcaaggga aaggaaaagc aaagggaaag gaaagcaaaa atagaaaaat gtagctacca
      241 gacacaaata catttgcaca tataaagctg ttctaatgaa agccaaattg atttgacatt
      301 cagtggcagt ttgaagccaa aaaaagcaaa gcagcctaca aaaggcccag ctcattgttt
      361 atggagtgtc atacttcatc atctgtgaga ccaataacag tgatgggaag acctttaaag
      421 cagggagttt gcacagaaag gctgtgtgga taccactgat gtcaaatgca ctagagtgat
      481 tgtgagctat ttcctgaatt gaaatcatgt ttgtcagatg ctctctgcag attgtatctt
      541 tgagaatagt atttagaata ttgttagaat tcttg
//
LOCUS       KCLJ01002959             590 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 329701cal ultra-conserved element locus
            uce-1622, sequence.
ACCESSION   KCLJ01002959
VERSION     KCLJ01002959.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 590)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 590)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..590
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="329701cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>590
                     /note="ultra-conserved element locus uce-1622"
BASE COUNT          170 a          151 c          144 g          125 t
ORIGIN      
        1 tgttcctgaa aagggaggag ggccgaggca gcagagaaat gccaggtcca ttccttctct
       61 aaactactga gcaaaaataa caaagtcaaa gcagaatcga atttcaaatg gacaaagaat
      121 aaaacatctg ttacacgaag gggggaagca gtttaaagac tgagctaagt gaatccttta
      181 gcaaccttcc ttcagggaag ggaaatctga ccccaggaaa taaataaaag tcacccaaaa
      241 agtgaacaaa agaggtgttt gccccaccac cattcatcgc cgctaacgac ttgttcatta
      301 tgagtgatga tggataaaga cttctcacgc tgagatgaaa tcaagattta tatgcattgt
      361 ttcctctccc aacttgtggg aagatcatca tcatttaatt ctatctctgc ggccagcgat
      421 gggcatccag agagcaggtt atcacacggc gcagtcagct ggcagggcgc gagtgccgct
      481 ggcacatctg gagcgcggcg cgcagccggc ctgagcgatg gctgctggcc accctccaaa
      541 ttgctgcagg ctgccggggc tcctctccac ccccagcact gctcctctcc
//
LOCUS       KCLJ01002960             500 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 329814cal ultra-conserved element locus
            uce-3808, sequence.
ACCESSION   KCLJ01002960
VERSION     KCLJ01002960.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 500)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 500)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..500
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="329814cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>500
                     /note="ultra-conserved element locus uce-3808"
BASE COUNT          138 a           94 c          120 g          148 t
ORIGIN      
        1 agaaaaggag cagacaagaa ggagaaaaga tggggaatag ctgggattat ctgtgtgctg
       61 tctctcaggt ccagtgacaa cagcactaca atggggagct ttcagggctg catatggtct
      121 tccttccgag ggagttgatt aagcgactcc ggatgaaatt gaaatcctgt gatttgacct
      181 ttgtctggcc tgggaggact gcaattcgca taacaatttc cttttgttct ttgtttggag
      241 ttattaatcc aacatgagcc tcgaattaat caggggtagt gcgttgttac atttctaatt
      301 cacagctcca ctgcttgtgt cttttttaat taaggccgaa tgatagcagg ccttagcccc
      361 tgattgcaac acttactaac cacacattga gggatgaaga ggctaaatag gcagaatgag
      421 attacttcaa ggtttcactt aattgttttt tcctttaagt aaagagcact gaatgaacat
      481 tgttaatgcc aggctgccag
//
LOCUS       KCLJ01002961             547 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 329923cal ultra-conserved element locus
            uce-7094, sequence.
ACCESSION   KCLJ01002961
VERSION     KCLJ01002961.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 547)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 547)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..547
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="329923cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>547
                     /note="ultra-conserved element locus uce-7094"
BASE COUNT          140 a          120 c          125 g          162 t
ORIGIN      
        1 caggctcagc ttttccagga ggaagcgctg ggcagcttcc ctggggcatg tctgctgcca
       61 ggcctgggaa gctgtggggg gaggcaggta tcttgcggta ccgggtggac ttccagggca
      121 tggaatacca aggaggagac gatgaatttt ttgaccttga tgactactag gtagtcgagc
      181 tgggtccggc aacacgtgcc tcgcccctcc agcatccaac ccaaggagca aactcatggt
      241 ggaaaacaca actgatccct gccttagaat tggaacattt ccagaacttg atccacgagc
      301 atttggattt gcaaaaccct acactttgat ttgtcatagt gtcagtacta agttcctata
      361 tgccactttg gactaattaa tcccagtttt tacttttact caatggtgaa attggttgct
      421 cttgtatttt atggaaatga tttttttaac cttcatgata cattaactgc tgtaaacctc
      481 ttccttccaa aattaataga agtaagatcc tatttcttta tactttgatt ggagaaatca
      541 attgctg
//
LOCUS       KCLJ01002962             734 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 330026cal ultra-conserved element locus
            uce-7133, sequence.
ACCESSION   KCLJ01002962
VERSION     KCLJ01002962.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 734)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 734)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..734
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="330026cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>734
                     /note="ultra-conserved element locus uce-7133"
BASE COUNT          235 a          129 c          152 g          218 t
ORIGIN      
        1 gagctaactt aatcctttgg aaggggataa tagggtaata aagcacgaag gaataatctt
       61 agtcatgtct ctctggtatt ctgacaattg caccctgttc taaagcagtc tcatgtaaaa
      121 aatgactgta ctcgtcaact gcgcagatga gggaaacgtc cgtgcctgtg tcagtcattt
      181 taatgagtca caggaggagg gaaagtgcag gaacaaatta aacacaacag acccccaaca
      241 aaagaaagtg agaatagtta caatttcatt tgcttctaaa gcacagcact tgggtaataa
      301 acgtcccctg caaatgtgct gagcaaacac ctccgcattc atcaatatgc gggagctgtt
      361 tattgcctca taaacttgga agcaagtgat attgtctcct aaatcaatgg ttgcgtggac
      421 atcctaggca ctgtaggaga acagtacatc cagacaatgc tgatacttaa attaatggtt
      481 ctagtaatga ctgaaaggag ctttgccact aaaaaaagtt agatctagat taaaagtatg
      541 cctaggacac aatgtatata tgttgtgaca gggatgtgtg tatgtatgtg tcttgttaca
      601 gtttttatta ctttggcgta aaaactacta ctccatgcag ttttgattta aatgtgggtt
      661 gagctgccaa tactttaagc ttagtttatg tatttctaaa tctgtttagc tttatcaatt
      721 tcttaaagaa ctaa
//
LOCUS       KCLJ01002963             636 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 330136cal ultra-conserved element locus
            uce-317, sequence.
ACCESSION   KCLJ01002963
VERSION     KCLJ01002963.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 636)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 636)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..636
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="330136cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>636
                     /note="ultra-conserved element locus uce-317"
BASE COUNT          144 a          129 c          150 g          213 t
ORIGIN      
        1 gtagaaagca ctttagctta aaccagatgt gcgaaagaga gctcctaaac gttttttatt
       61 tgtgtgtatg tgtttgtgta tgtgggagat atttttggtt cctgctaggc ttctttgcag
      121 caaagcccct ttctagaatt tactttcctt tattagagtt gcagctcggc tttgtgtggg
      181 cctctggggg ttttggccag ccgttggcaa tttctctcag acacccaatt acccctgacg
      241 tcaatgccgt ctctcccatc tcccttgggt gcccacattt tttcctttgt aacactaata
      301 gctgactagc taagtgcctg ttatttcctt ggcagaagat ttgattgtgt tttgggccgg
      361 atactaaatc caaaaactat gtaaaaatgt caataggtga gtgcacattg atttcggtta
      421 gtcacagtga tatttgagcc cctttggggg ctctgtctgg ggaagtattt tacaagaaag
      481 ataatataac agaaaattac tggagctgca caggtctctg gtggatttct taggggcctg
      541 ctaagtttct gtagaatcaa caaatgcttt attaatctaa atttgcggtt ttgttccgcc
      601 tctcttcaga cggctcgggc tccggaggag gctcgg
//
LOCUS       KCLJ01002964             372 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 330248cal ultra-conserved element locus
            uce-3842, sequence.
ACCESSION   KCLJ01002964
VERSION     KCLJ01002964.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 372)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 372)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..372
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="330248cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>372
                     /note="ultra-conserved element locus uce-3842"
BASE COUNT          141 a           73 c           45 g          113 t
ORIGIN      
        1 ttctccctcc caataataaa aattattgag tactctaact acagttcaac aattgaatca
       61 atgtcacttg tttgcaacct gttttgtaaa tactttatcc ataacgaaag atataaacat
      121 gcaaaaacct gaatccatag tccaaataat acatacacgt gttctgaagt ttctgcactt
      181 ctccacagac tatgccaata aaacattatg tacacatacc attttttaca gtgaagtggg
      241 aaaaaaatac tagaaattaa aacgtgtaca tggattaaga ccaaaaacat tctagcataa
      301 gatcaattct gctacaaact ggtgatatga aaactccctt tatttgcaac cagctgcata
      361 atttttagaa tt
//
LOCUS       KCLJ01002965             716 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 330467cal ultra-conserved element locus
            uce-7073, sequence.
ACCESSION   KCLJ01002965
VERSION     KCLJ01002965.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 716)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 716)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..716
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="330467cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>716
                     /note="ultra-conserved element locus uce-7073"
BASE COUNT          251 a          122 c          182 g          161 t
ORIGIN      
        1 agaggggagt cttacaggtt tgctgagaaa atgcttcttt cagaaaagct agatgtgtct
       61 cattctgata ctgaggagtc agttactgac catgctctac cccttagtgc agagttacag
      121 gggactgata aacgatgcag agaaaaagta gctactgccc ccaaaaaaga gattctctcc
      181 aaaatctata aagatgtatc tgaaaatggt gtaggtaaaa tgtctaagga ggatcattat
      241 gataaagtga cagtgttaca ctacactgga gatgttagta gtcacaaaca tgcaatgtgg
      301 atgcgcttta ctgaggacag attagacaga ggtagagaaa agttgatata tgaagacagg
      361 gtggacagga ctgttaaaga ggcagaagaa aaactgactg aagtatccca gttttttcgg
      421 gataaaacag agaagttgaa tgatgagcta cagtctccag agaaaaagca gcataaaaaa
      481 aatggcaagg aaatacattc tagccagagc tctgccagca gcagccccga gaaagttctg
      541 ctctctgaat tgccatcatc tggggatgaa tggagtaagg tgaagcagta tgcacatgat
      601 gggaagtgct ttcccaaggt ggatgaaagg aaagcatcca gtttgcccag cagtcctgaa
      661 aaaaggatat atgtgcaacc tgcagaggac tctaaacgaa ctatggaaca caaagg
//
LOCUS       KCLJ01002966             653 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 330576cal ultra-conserved element locus
            uce-6942, sequence.
ACCESSION   KCLJ01002966
VERSION     KCLJ01002966.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 653)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 653)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..653
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="330576cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>653
                     /note="ultra-conserved element locus uce-6942"
BASE COUNT          229 a          102 c          122 g          200 t
ORIGIN      
        1 aaaggctctc taatatgagg gaataccagt aaaacagtga tgaaaaccat aggtacgaat
       61 atctgcaagt ggctcacatg aaagcattta ctgcttttca tgcacatgta ttaaaccata
      121 gtggaaagga gcctttcact aaaaatgcat taattatttg acactggttt tcttcagagc
      181 tatgggatgg aagtgaaaga ttacagctga aaaaatgatc atcatacttg aggtaggctc
      241 acagaatctt ttcttatgtt ctgtgtgaag ttgtcttgaa ccgaaacctc tgctccttaa
      301 ggattaaggg attgaaaagc aaagactgaa gctgctgtaa tttaaaccca gccattctct
      361 agcacaaagg tgcaaaatgg actgagtcaa tctgcttctt tgctagttca cctaagaaat
      421 aattttacct tttgaaagtt ttatattatt aacattccaa agatgttaca ggaaatttat
      481 tctcttgatt tttaaacatg ttagcagagc cataagacat ggaatagggg aacatggttt
      541 caaattgcaa aaaattccat ctatgtgatg tatagataaa tcataaagat aaaattaatc
      601 aatgaatgtc actaaggtgg gttttaaaaa tatcttgaaa ttcttgcaga gca
//
LOCUS       KCLJ01002967             587 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 330686cal ultra-conserved element locus
            uce-1272, sequence.
ACCESSION   KCLJ01002967
VERSION     KCLJ01002967.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 587)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 587)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..587
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="330686cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>587
                     /note="ultra-conserved element locus uce-1272"
BASE COUNT          198 a           94 c          135 g          160 t
ORIGIN      
        1 ttaagtcatt attagaaatg acagggaaac ctgatgaaat tgtactttca attggaaaac
       61 aaaattgcaa tcagaccaac atgatttcct catggtctga ccatgctaat gccaagtcga
      121 gacatgggca aatgtattta aaagtcataa tggagtatta ccatgcaatc tctttttact
      181 ggcccttatt aatataaaac ttcaatttgc atgtaaatgc ggtcaacttt catatcatca
      241 aaatacatga ggcctgggaa agtaatgaat tgaagtttga tgcggcaatt acggacgttt
      301 ataaagaatt ttaaagaggt cattctagcc ttggctgaga aaatgaggaa atcaacaggg
      361 aatattgtca atatagcaac agtgggagtt ggagtcagtc ccaggtgtta gaaggccaga
      421 tgatgattaa tagagaggga gtatgaagcc tttcacccag aaggactggg ctggacctga
      481 ggctcaataa cagaaatctc atgaaaaggt tcttgctggg ttcccacttt agctgcctcg
      541 aaatgtgttc cagagggaat aaagtagcaa gtgtttatga gagagag
//
LOCUS       KCLJ01002968             349 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 330792cal ultra-conserved element locus
            uce-6058, sequence.
ACCESSION   KCLJ01002968
VERSION     KCLJ01002968.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 349)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 349)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..349
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="330792cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>349
                     /note="ultra-conserved element locus uce-6058"
BASE COUNT           97 a           64 c           70 g          118 t
ORIGIN      
        1 gacaatttct ttccaacaag ctacgtaggg acataccaga tgttgcagtg attttagcta
       61 ttactgttaa ccatgtacga tatttaaaat aggcctattt tgatgtgttg cctattatac
      121 agatacacaa aacacttttt ggaggcctca gttacaagtg gcagagcttt ctgtgtataa
      181 tttgtctaaa taatttgtct aataaaattg ttttctaaac ttcctgtgca attgcttttc
      241 agcctgtggc tactcgtgga tttgctgcac tgctactgaa gggatgggat gagctcctca
      301 ggagtcagct cagtatggaa aacaccaagg tttaccatgt ttatcaatg
//
LOCUS       KCLJ01002969             724 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 330896cal ultra-conserved element locus
            uce-1914, sequence.
ACCESSION   KCLJ01002969
VERSION     KCLJ01002969.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 724)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 724)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..724
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="330896cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>724
                     /note="ultra-conserved element locus uce-1914"
BASE COUNT          214 a          150 c          119 g          241 t
ORIGIN      
        1 tttttggaac taattaatta tgtcatgaaa gggagattcc ccaatccttg ctaatcttgc
       61 tttctggata gcagggggaa aatgaggaag gtgtttagca gtctcagttg tctctgtgat
      121 tcaaatcaca gaatgaagcc agatagcgca gatcaggcaa agactgcctg ctctgcttgc
      181 gttttctctg caagaatcag tttcaaatat taggaggatt gttgcaatta actaagaaaa
      241 atgtttcaaa gctgtataat taaaggccag cattttattc gattttaaaa tagcctttat
      301 gaaatctact cctgccactg gtaattacaa tgtacatctt aatacacctc tgctaggcct
      361 gagctggaga taacagtcct gtgtgtattg catttggctt gtgcatagaa ggtaaaatcc
      421 tttatcttat ctcaatctcc aaacaaccag cctctcttcc aattcagccc taatcttctt
      481 agtaaataat actgatattt ttcaccataa caaaaatgga gctgccagat tcaggctgat
      541 aacacctctc atttacacac cattctcagt caaaatctgc ctgatttttc ttaatctctt
      601 taactcatct tttttacatt cagacatggt aagttccttg ctaccaaata atattattat
      661 aaataaatct gttgaataca gctgcctctt tgggtaaata ttggaactcc cctctttcct
      721 ggct
//
LOCUS       KCLJ01002970             807 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 331005cal ultra-conserved element locus
            uce-4605, sequence.
ACCESSION   KCLJ01002970
VERSION     KCLJ01002970.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 807)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 807)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..807
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="331005cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>807
                     /note="ultra-conserved element locus uce-4605"
BASE COUNT          245 a          145 c          202 g          215 t
ORIGIN      
        1 cacagcactg ttattcagaa gtagctttcg agcagagact ttcaacggga aggtgctgtt
       61 tggttggaca caaatcagca aacgtgaagc tgaataattc aagcgtgcac gaagagcttt
      121 ctgaagaacg caagaattct tcaaacattt gcatcagcct tagagaacaa tacaagcagc
      181 aggatttgaa acagatttac agatgcactc tcttgagaat gctcattaaa tgcaagatgc
      241 ttctgtggct cgtgggcttg cacggaggta gaggtttgca agactgacgt atcagataaa
      301 gtcagagtgg ttaccacacc gacggtgtag cagctgcata ataaatgatg gagagaatca
      361 tgttaggcat gcccacctaa cctaacttga atcatgcgaa aggggagctg ctggaattca
      421 aatagacttt ctggttccca gcagtcggca gtaatagaat gctttcagga agatgacaga
      481 tgcaggggaa agatgctgtt ttgcactatc ttgatttgtt acggcagcca acttattggc
      541 atgatggagt gacaagaaaa gcagctggca tggaaggtag gattatcaaa gctattgcat
      601 cattatgaat gtaattagaa actgaccatg acaaagcata tgctagaatg agctgtcaca
      661 gaggatttgt tgctgaggtc ttgaaactct gaaaacaaaa ttcctcgtgc aaaatggatt
      721 ttgcagtttc atttatgctt ttctttcctg cttgcctgca agctcgggga attgcttgct
      781 tgaaagagag tgttctgtta ggatgag
//
LOCUS       KCLJ01002971             706 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 331114cal ultra-conserved element locus
            uce-533, sequence.
ACCESSION   KCLJ01002971
VERSION     KCLJ01002971.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 706)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 706)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..706
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="331114cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>706
                     /note="ultra-conserved element locus uce-533"
BASE COUNT          216 a          149 c          145 g          196 t
ORIGIN      
        1 ttgtgtggca ccatgcagaa atctgccaaa acaacacagt ttggtgctca ttgtatccta
       61 attaatacta taatgagttt ccttagatag ccaaatcctt aatcagccct atcaaaacta
      121 tgtctgttca gagaaagact cgtgttaatt ctgcttaatt cctgacagtg gttaagcacc
      181 attaatactc cataatttca ttgtatgtta ttgtaatcat atcagcatat atctcggcag
      241 ctacagaagg ctcaataggc tgttcatgaa ttatcagtca cgtggtcctg tttcactaag
      301 agactatctt ccatcacagc cagacctcct ctgccctccc cacagtcagt agcctaagca
      361 ggtattaata aaggtctctt ttttaaaatt gcactgctct aaatggtctt taagggaccc
      421 agcagtaatc tcaagatccc tatattttag caggaaggca ggacagagga attaataaga
      481 gccctttctg tgtaaactgc tccctgctct aaggctatat cctgatgtca gggcgctaag
      541 agaattttaa atgcacagga tggattgttt gtgttgcgaa agcgaaacag ggggcaaagg
      601 ctaagagact tgagaaaatt gaaagactgc cagggatgct gggatgcaaa tagcaacaaa
      661 acagggataa atgctcctgc tcacatatgc aggagtcctg cagaag
//
LOCUS       KCLJ01002972             561 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 331225cal ultra-conserved element locus
            uce-814, sequence.
ACCESSION   KCLJ01002972
VERSION     KCLJ01002972.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 561)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 561)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..561
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="331225cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>561
                     /note="ultra-conserved element locus uce-814"
BASE COUNT          157 a          134 c          123 g          147 t
ORIGIN      
        1 gggggagcgg ggggcggcag ccccgggtgc tgagcccttc cccctgcctg cccgccgctg
       61 ctgtcagctc gctgcctgca ctttagctgt ctctttccca gtccctaccc tgtcagtttc
      121 tgggctgcca atttcaactt gaagcttgac tgggctgatt tgatgcaaat acctccaggg
      181 aaaaccctga aactgatgaa cagttatgtc aagtcgattt tgcaccatcg ggaaaaggta
      241 acctctgcga gaaaaaaaaa caacaaggtt aaagagacaa gggcttttca cgtgtaatac
      301 cactgctgca catctcgttc actgtttacc atccctcaga aattgtaact gtcagaatta
      361 gtcctaattg cagatgcgaa agctgccatt ataataaaaa cagaggcagt gcaggcatta
      421 aatgtagcag cctaatttgt gagactactg aaaaggtaga gtaaatgaat atttcattac
      481 tttaattacc agggactact cttttcttgc tgtcttatga taagtgttgc tgtaactagc
      541 aacagcaaac atccactaaa a
//
LOCUS       KCLJ01002973             740 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 331336cal ultra-conserved element locus
            uce-2733, sequence.
ACCESSION   KCLJ01002973
VERSION     KCLJ01002973.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 740)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 740)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..740
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="331336cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>740
                     /note="ultra-conserved element locus uce-2733"
BASE COUNT          232 a          149 c          123 g          236 t
ORIGIN      
        1 atcaattaat ttgaaggaag gaaatgtgtg acaggtattc tgcaaaacaa ccataattac
       61 aagcaccata gttaaactag ctctgaaaca gctaggattg tgtttgggag ctgcttgaat
      121 aacatttgcc ccacttatcc tccatttcaa tttattattc ctagtgctag tgttccctat
      181 atcatcaatg tcaaaaacta aaaagtctta tcttcaactt tcattccaat gcttcaaaag
      241 agctttgaat ttgcatctta ctctagggaa gatgtagttt aaaaacattt ttgcccagct
      301 tgctccatta atttctgagg aaaatgcacc tactgctgtg aatatgacag ttctcaacct
      361 tggtgttttt acaggatgtc cctccctagg gaacaaccaa caccattctg acttaccctg
      421 ctggaactgc acctcctgct gggtaatcag ctactgcagc actaagggag agacctcagt
      481 atgattagct ggatgcccct tgtgaatgct aaggaaaaag agaactgcaa gttttctagg
      541 gggaaaaagt gcttttagtc atcatctgtt ttcaattcaa gcagctaatt tacagttgca
      601 tagagctgct caattaccag cagcacttag tattttatac atctcagtaa gcttaactta
      661 aaataatatt catcaatcta taaaatatat ttttctccca attatttctg tgagtcaaaa
      721 acaaaattaa ttttgtaatg
//
LOCUS       KCLJ01002974             654 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 331447cal ultra-conserved element locus
            uce-5842, sequence.
ACCESSION   KCLJ01002974
VERSION     KCLJ01002974.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 654)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 654)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..654
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="331447cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>654
                     /note="ultra-conserved element locus uce-5842"
BASE COUNT          199 a          123 c          157 g          175 t
ORIGIN      
        1 ggtcagtatc acagacagtt tccaactggg caaagtacaa tattttccct ctgcttttta
       61 tgaatggctg gatagggttg tgctggagtc agagttccct gtggaagcca ttcatcaaaa
      121 caaaacaaac acatgcaaaa aaaactttaa aggtccagtc caaagccgct gggtgccaga
      181 ggctgggaaa acatgcccca gctatcactg aaagtattca aggggctttt tggtggtctg
      241 aaaagtatga actgctgtgt agaagggcag ctggtagaat tactgtgaca catactaggc
      301 agaaagccgc cttgtttcag acattgtctt tcctctcatt gaagtgtcag gacctaattc
      361 atggaaaata tggtgagttg gcagctcttt cagaagattt cattgagagt gagtgagagt
      421 cacatgaaca tgagtgcaca gccaaaaata tatggggttt tctgagctgg agaaaacagt
      481 cagcctctta tgtggatttc atgtggtttg ggagtagaca cgtgtaatca acaggctaca
      541 gaagagctca gtgagttcta taattatgag agattccttt aaacaaatca ttcctttgca
      601 gcaaatgtcc attaatgagt tcactgcagt ccacctggag aaggcatcaa taaa
//
LOCUS       KCLJ01002975             778 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 331556cal ultra-conserved element locus
            uce-238, sequence.
ACCESSION   KCLJ01002975
VERSION     KCLJ01002975.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 778)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 778)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..778
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="331556cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>778
                     /note="ultra-conserved element locus uce-238"
BASE COUNT          187 a          156 c          158 g          277 t
ORIGIN      
        1 tctgtttcag agctcccttt gtgtgcagag tgagacccgg gtttctcagc ccctggaatg
       61 ctctttttct atcgctgcta atagctgtgg acgttttccg tgtggatgtt cagtacacgc
      121 tgttgtgaat cccaggatga tatcgccatt acttagagct gtattttgca ttgcctattc
      181 tgtgattgct cagcatgcac aagggtagag ttaaaatctt tattcatttc atttaaaaat
      241 gtttcttttg ttctccttat cgtgttctgg ctttcccaag gatatatgcc ttgaacgaaa
      301 agtcacatgt gcattactaa ttgtgtgcca ttgtatttac agttcctagt ggtggcactg
      361 tgaagctact aattcttttg cttcacttga tgtaaaataa tctgagtgtc tttgatagca
      421 gtgaaacagt attaattgtt ttgtacattt cttggtcact cttcttaggt ggtcttcata
      481 atctattaga actttcagcc agatttttgt aatgtcatgc ctccagcagt gattaaattg
      541 gtaattaatg aacagtcctt ggcaacataa accacatccc gttaattttc ccttttgagt
      601 ttttcgaagt tgtcgtctct gtcagaaagc attgcgccac cttgctacgg ccccttggca
      661 tggaaccaca gcttttttgc agccattagt agatcagagc agtaatttca cagtattttg
      721 gtcagggtaa ttatagtacc aagtaccgag tagagttggg aattcacaca agaagtcc
//
LOCUS       KCLJ01002976             657 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 331666cal ultra-conserved element locus
            uce-3602, sequence.
ACCESSION   KCLJ01002976
VERSION     KCLJ01002976.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 657)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 657)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..657
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="331666cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>657
                     /note="ultra-conserved element locus uce-3602"
BASE COUNT          207 a          119 c          130 g          201 t
ORIGIN      
        1 cgtttttcat ttggctttct actatatctt aaatgcttta tttttcagag gagagataag
       61 acttggttct tcacataaaa ctacagctta gccattactt agtctttctg tgttacagaa
      121 aaggtcctgt ctgtgcacag atgtctcaga ttaaattgta tctcacagtc cttacagtgc
      181 tcagtactag atgaactgcc aaaagggccg taggcaagaa ctaaattgct ttggtttcag
      241 tacacagtga atttggctca gacaagctga atcagtacat taaatgcgaa tccctcacag
      301 atttgaaagc agcctttagc acaattattg actgtgagtg atgattatgt ctaattgaag
      361 gagacttttg ctacctgtag ctcagttgga gtccatgaga gccacagcaa ggcactgcat
      421 cttaattcaa tgttccagct tgaaagaagc aattgaacct aaatcctgaa gtgtatacac
      481 atggtcgata aactttaata aactttacag gttcagtaac tagactgagt gtacataatt
      541 caattcagga agggaaaata gctaacaagt atgttaggct acagtaatgt attagttcat
      601 ctcatgcaga ggccaaaagg aaaagatata gtttcatgct tgtctttgga acaagtc
//
LOCUS       KCLJ01002977             774 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 331777cal ultra-conserved element locus
            uce-1678, sequence.
ACCESSION   KCLJ01002977
VERSION     KCLJ01002977.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 774)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 774)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..774
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="331777cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>774
                     /note="ultra-conserved element locus uce-1678"
BASE COUNT          260 a          149 c          127 g          238 t
ORIGIN      
        1 caggaatgac tttcaatcag gcatttttaa attgttttta aaaaaactaa gctaaagagt
       61 ttaattaaca ggctcagagt aatagttata ccatttttcc tctgctatca gctttcactt
      121 ttatttacga tgggagtccc ccttgtatct cgttttccac agggcccact atcactaata
      181 tttctgtgat ctctgaataa accaaaattt aaagttagta cttacaatca atgcaaatta
      241 atgatttctt aaaaaaaata tttcaatcag gaaaagcagc tttgtagttg aaaatcccat
      301 gctggcctta gagtgggagt ttttccagcc tctgcttaaa tccaaaaaaa tactgcaatc
      361 ttctggcaca ggctcactgt aatgctttaa aaacaattta gcaactgtca ttgctgtaat
      421 tacagtaact aattaccatc cttagcaaac aaatagctta acataatacg caagccgaat
      481 caattttgaa gaaatgcaaa ttccgaaagc gaaaaagggc attttggcaa acctgaaaga
      541 gaagcgggaa aataatacac tttgttttat ctgcacataa ttcccaggga atatcatatc
      601 ataaatattt gcattcagtt cttatcagga catttgcatt tgcttcttat cagtctgcag
      661 gctggactct gccagataga aagtagagct ccacaccatg cacatatttc taatgaatca
      721 cgtctcaggc cgagagaata ttttggctgg aactttatca ctgagatgaa gagg
//
LOCUS       KCLJ01002978             695 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 331889cal ultra-conserved element locus
            uce-4472, sequence.
ACCESSION   KCLJ01002978
VERSION     KCLJ01002978.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 695)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 695)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..695
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="331889cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>695
                     /note="ultra-conserved element locus uce-4472"
BASE COUNT          212 a          144 c          106 g          233 t
ORIGIN      
        1 ataataaaca tttctctttc ccatgacata aacaatggta ctctggtcat aagccaaaac
       61 ctgacaaagg tccaaggttg aaaagggttt ctttgagcct gtcttctggt ataattatta
      121 taggttcaga ggaaccagat ctggagtgtt gtaaaactca acacaatgaa cttgacagac
      181 agccagattt ctgttttcag ccagtttagg gttactataa tctcattatt atgcttgaaa
      241 gacgacaagt aatagaatct caggtagctg ttctgtcttt actcagccgc atcttctctt
      301 ttatgccaat ttcccttgat tacctgaact agtgaggctc ggttttcaac cacttatctt
      361 ccagcaataa tcatctgatc agccttacaa ggttctcact gcactcaacg gttttaatgg
      421 gtcaagcgtt aaattaaccc tttaaccata ccccaagaga atacaaaact tattaaaaaa
      481 caatttacta ttcagccatt gttaacttta cagaggagga gttctttaaa cagattttct
      541 tgttgttcca ttcactcata ccttgttttg ctgtaccttt acccttacta acacattttt
      601 ataaagcttc ttaaggaaac atttttatgg gttcttactt ccaaagaaac acaaaatgaa
      661 gccaaaagct ttgtgtatct tatgttctat ttcaa
//
LOCUS       KCLJ01002979             792 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 331998cal ultra-conserved element locus
            uce-2453, sequence.
ACCESSION   KCLJ01002979
VERSION     KCLJ01002979.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 792)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 792)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..792
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="331998cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>792
                     /note="ultra-conserved element locus uce-2453"
BASE COUNT          190 a          189 c          198 g          215 t
ORIGIN      
        1 ttagcgtggt agaagttgca tttggaaatg gcaagattac agtggctttc ccagtatgct
       61 tgagaccgtt aaacccatat gtattcattt cattttatct ttaatgccta cttgacctct
      121 gctgatgctt aaccgaatta ctaattaggc acgatccacg gcagcatagc ggaggtctct
      181 gacgcagtga gccgcgcaga cggactagcc tgtgcccttc ccattgttca gccctttctt
      241 gtcctcttaa aaaaatcagt tggagataaa cgggtaagac tttggcacgc tgcatggtat
      301 cagtccgagc tgatgcaaag agtgattgtg aagtgttttc ttatgcttcc cgcagtggat
      361 tcactattga gttggcttcg gcgttcacag ttgtggtagc ttccaatgtt ggacttcctg
      421 tcagtactac acactgcaag gtatgccttt gcccagcgac tgcagtcaag gcagtctgga
      481 ctattcatct taaaattgtg ccgctcgagc cagggataat ggcacggtga ggggaaagca
      541 gccgctgatg taggtagggg tgcctcacct cggtcacacc agcaacgtgg gaaagtaatc
      601 aggcttcctg cgttggagtt ggaattggcc acagcataaa ccccatagct gctggtaaaa
      661 atagcgctta caagcccgac ctcaatttta aagcaaacga ttgcgaggaa gagcctggtt
      721 tcctctgacg gtgccatttg aacctgccgg gtaacatttc tcccttgttc agaggctgcg
      781 caccattcat ca
//
LOCUS       KCLJ01002980             725 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 332107cal ultra-conserved element locus
            uce-7257, sequence.
ACCESSION   KCLJ01002980
VERSION     KCLJ01002980.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 725)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 725)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..725
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="332107cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>725
                     /note="ultra-conserved element locus uce-7257"
BASE COUNT          197 a          153 c          140 g          235 t
ORIGIN      
        1 cactggtgca gcaaagatgg ttcattttcc tatgacgttc tgcttctgtg gttgctgttc
       61 tcagaatttc tgaccccagc aggatttcct tctgaagtac tcaccatctc catgtgcctt
      121 tcctagcagc tgtggctgtt ctcttctgag gactagctgg atacaagagc actgcagggc
      181 gagcagtaac tccaatagcc agtgctgata cgtggtgtcc atatggacag tattttacat
      241 taaggccttt ctttactgag tttgatcttg ccccatgagt catagctgtc aagggatttg
      301 ttgtaagtaa tggtcatttg tgtttcataa ttatcttgaa taaacacaat tagttccaca
      361 ttctgctgtt ttcttcctaa ggcatctgta aacattctgt actattctag caaatggctt
      421 ttggcaatca ttagaaaata aaacccaaag cgaaatggtt ctcagtggat ccttttaatt
      481 tattctaagg agtgtgccca gaggagtaat gagacctact agacagtaat ggcaaaggga
      541 tattatcttt cacttagtta accatcgtaa cccactttga agtatctcca atcacagtcc
      601 tcatgtggtt aaaacagaac atacactcaa gaggtttcac ttcagggttg ctccaataac
      661 caacctaata tatttggtat aggaataatg taggcttctt ccattcttcc attaaaagga
      721 tatcc
//
LOCUS       KCLJ01002981             618 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 332212cal ultra-conserved element locus
            uce-125, sequence.
ACCESSION   KCLJ01002981
VERSION     KCLJ01002981.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 618)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 618)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..618
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="332212cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>618
                     /note="ultra-conserved element locus uce-125"
BASE COUNT          208 a          139 c          113 g          158 t
ORIGIN      
        1 cacagttcat acttttaatc agaggtaact ggtctcaaac aatgacgctc ttttcctcta
       61 caattctaag caataaatga agaaaatgtt aacatgaaga aaagtaggag atgggaaaat
      121 gtaaacaata agccccgtaa aactcctgaa caaaccagta cattttgaat tgctctttgg
      181 taactgatga aaaaaagtgc tacgaggcaa atccttcact gggtcactca ctggggagac
      241 tggtaaaaat aaattgcaca gctctaattt tcctagcagc ttccatgcta ttctttgaaa
      301 ctgagtaaga aacccttggc ctaatcccaa gagccaatct atagtaaata gtgcacactt
      361 aatgcctaag ttccttttta gcaccattca gacagtgact tcagccacac agcttagtca
      421 tagcagacat ttttgtggtg aaagcattaa acccacatgc agctctcttt ctgtggccac
      481 tgggggtcat gctcctttcc cattagctga ataaatcata aagtctgcac agaccacaca
      541 agaagcaagg ctagcaagcc acaggcagtg cctacagcct gccatttctt ttcagaattg
      601 aaaaacagga gagaaaca
//
LOCUS       KCLJ01002982             690 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 332323cal ultra-conserved element locus
            uce-3659, sequence.
ACCESSION   KCLJ01002982
VERSION     KCLJ01002982.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 690)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 690)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..690
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="332323cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>690
                     /note="ultra-conserved element locus uce-3659"
BASE COUNT          214 a          144 c          131 g          201 t
ORIGIN      
        1 aggacttctc attttgcatc agaactgtat taactgtgac ttttaaataa ccagcctcac
       61 taaagactaa tcattttgac agtgcattct ctgcactgcc catgtacttg gaggctgtcc
      121 tcaaaacatt gaaagctggg acagtattca tggttaagaa gtccagaagc agccaaacag
      181 gtgggcactt ctttcagaga tagaagacct tttgtacact ggttctatcc taggggggct
      241 acacctgaga gagaaagtga attatcaatg acattttttt aaagaatcag tggtttaaca
      301 ctaatttcta atcagatcct acagaaagga acagctcgca tggcagctgt acttttccca
      361 gggttaatta cctttcactg ctctctacta atgagtcagc tgttcctgtc atcacacaac
      421 tacactgtgt tcatctgtag ctctagctgt ggacaaacac agtagctaga gccctgttta
      481 catattggcg aggtttgttg tgcaaagaat ttgcaaagca aaaatactta aaactccttc
      541 caatcccatt tttcaaggaa acaatttttg ggcaaacacc acgttctcca cgttactaaa
      601 tgcatcaaca ggagtaggaa tctaaggata taaaagctaa tgaaatgcat aatagtttgt
      661 atcagaaaga ttaggtcctt gtagccatct
//
LOCUS       KCLJ01002983             654 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 332434cal ultra-conserved element locus
            uce-5433, sequence.
ACCESSION   KCLJ01002983
VERSION     KCLJ01002983.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 654)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 654)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..654
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="332434cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>654
                     /note="ultra-conserved element locus uce-5433"
BASE COUNT          199 a          124 c          126 g          205 t
ORIGIN      
        1 tctgcacagc gtgcaaccat gctctgccat caaattaatg ttaaaatatg tatgtcctag
       61 cttctgattt atagtatctt tgacaaatag taaaaaggac aggcatgcca taaagtttat
      121 ggatagggtg atggcacgca caatgatgtc tcataaagaa taaagaaaag ttatttattc
      181 ttgtgattca agagctaaaa tacagataga ctggctgcgt gcacagaatt tttcataaat
      241 atcccacagt gcaccctgtt gtacagcagc catacattaa ttagagcatt cagcagacac
      301 tgcaatgtgt tacactcacc caagtgaatc ttcatttttc acatgcaggg ccttactaat
      361 taaaatcagc tttgcaatta aatgtggaaa attgtgttaa actttgaagc gtggtttagg
      421 tatttatttt tagggtattt tattttgatg caaatgaatt ctccatcaaa gtgagaccag
      481 caaaaggaag gtatgaggat ttctcttttt tgtattatag atgctcctct cggttgcaag
      541 ttgcaatgct ccactatctc tctgccagta cctggccctg ttccaatgct tttagtgagt
      601 gctatctgtc aaggcatgaa taatacagcc cctaggctgt cggcagaatc caaa
//
LOCUS       KCLJ01002984             751 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 332547cal ultra-conserved element locus
            uce-3797, sequence.
ACCESSION   KCLJ01002984
VERSION     KCLJ01002984.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 751)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 751)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..751
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="332547cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>751
                     /note="ultra-conserved element locus uce-3797"
BASE COUNT          272 a          142 c          149 g          188 t
ORIGIN      
        1 tgtaagacaa actattgaaa aataatgaga catccactaa aatgaaaatc ccatgtacat
       61 acttgacatc atcgaagaca ctcatctgca gcttcaggag atctgccact tcctttatta
      121 actccaagcc cttttccaca ctcagggggc tgttgaaagg gagcaagaaa acagagcatt
      181 aaaaaatgga actcatcaat acttgagagg ctaaaggtcc caaaagagtt atcaccttgg
      241 cctctttgag tctgaaagcc accactaact gtattcctgt cacatagtga tcgtgatatc
      301 aagggaattg ggatcaggtg cttcttcagg catgatgaat cacctgaatt ttccagcaat
      361 aagacaaaca ataaggtgca aatggaattg ttaggaagtg taatgggccc atgatgcagc
      421 taccagttca tctcagtcct caataaaaaa tgtaataaag taaaaggaca gaaagaaaga
      481 aaaggattga cgagacaagg agggaaacaa acaatgaaag tcaaattgca ggctcggtat
      541 caaatggaca agtgaaaagc atatttttaa actcattaga ttttaaaatg aatctttgcc
      601 cagtgattat ggatttgaaa gtaaacaatg gagcaagaca cacagtccag aggacactga
      661 ttagatacat aggatttagc ttggtgtgtg catacactgc tgacagagac ccctttaaat
      721 ctttttaacc tttgtcaatg ccacatttac a
//
LOCUS       KCLJ01002985             751 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 332660cal ultra-conserved element locus
            uce-3857, sequence.
ACCESSION   KCLJ01002985
VERSION     KCLJ01002985.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 751)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 751)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..751
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="332660cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>751
                     /note="ultra-conserved element locus uce-3857"
BASE COUNT          254 a          134 c          126 g          237 t
ORIGIN      
        1 gtattgggtt acagttatct tcaattaaaa aactgtttat ctttgaaaat acgtatctgt
       61 tactgacaag ctctgaaaac caccactcca agtctgtcag taaaaccaaa tgttaaatgg
      121 aaaatatttg ccaggattta aaattagacc tacacattac ttacagatgt ttcaatgaaa
      181 aacacttgaa actcaaccac atagagtaat aaaccccaca atggtctatt ttttttatgc
      241 tccaagttaa tttttattat ataagtagcc atacgaagaa gccattgcat actgcttaaa
      301 ttaaatgtgg aggaatgaaa tcagcagtat ccctttacag catatggtcc agcaaatcaa
      361 attataaagc tttccacatc tcattaactg caatgagtag agtgagattt ctaataagtc
      421 acttcttttt catgtgagag gtgagcagtg acttattgta actattctca caggatgacc
      481 cttgtgctga aattaagaac taatctaaaa tgggaaaggt catttggtca agtctgatca
      541 taacatttcc tcgttattgt tttagttggc attgaagcac atgctttccc agtgcatcag
      601 ctgaaaaatg cctttgataa tttcactgac agcaagtaac ccacacactg ccatttaatg
      661 agtttgggct ggattagctg acaataaaga atacagtata aatgctttta tagaatgagt
      721 ttttcagcag gaaaatttca tgcgtgcgta c
//
LOCUS       KCLJ01002986             357 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 332770cal ultra-conserved element locus
            uce-173, sequence.
ACCESSION   KCLJ01002986
VERSION     KCLJ01002986.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 357)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 357)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..357
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="332770cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>357
                     /note="ultra-conserved element locus uce-173"
BASE COUNT          128 a           70 c           50 g          109 t
ORIGIN      
        1 gaaaaacacc aaatatgagt aaatcttcat cttttcctaa cattacattt gctctgatgt
       61 attttctgaa agctgcccaa gtataactat ttattttaac taaagtaatc aagattaatg
      121 tcagcagtta tgacacacgc tgtttgctaa agaacacata gaacaattgc tcaaggcaag
      181 cttcattaag aaatcagata aaattagtaa aactgattat atttcaaaac tcagcagcgg
      241 cagcagctca aattgccatt caggagcctc caattagcac aattggtctt gttcacaatc
      301 agctctgtaa tctcattagc ctattatatt ttaatcattg ggataactgc acaacaa
//
LOCUS       KCLJ01002987             370 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 332877cal ultra-conserved element locus
            uce-3734, sequence.
ACCESSION   KCLJ01002987
VERSION     KCLJ01002987.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 370)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 370)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..370
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="332877cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>370
                     /note="ultra-conserved element locus uce-3734"
BASE COUNT          115 a           66 c           62 g          127 t
ORIGIN      
        1 aaaaatttta tcctgattta gggttactcc atttgtgcat acatattttt ccaaattact
       61 tggatggcct taaattcccc aagtagagag aaatgctttc tatggagctg cttatttcca
      121 gtaacccaca tcagtgctga cacatgaaaa atggtgaaat tactgaaggt agtccagcct
      181 gaataaggac taccttatta gttcaggtac ttgcatcgcc ctaattttca tattaatcat
      241 gtgtccatct ttctttgaaa tagggccatc atgcttcatg tcagaattta gcatgtaagt
      301 aaaattcata gtgcttcaaa tctcacttga aaatatttgt atgaagagaa cagtgacaaa
      361 ttttattgtt
//
LOCUS       KCLJ01002988             692 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 332974cal ultra-conserved element locus
            uce-3752, sequence.
ACCESSION   KCLJ01002988
VERSION     KCLJ01002988.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 692)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 692)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..692
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="332974cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>692
                     /note="ultra-conserved element locus uce-3752"
BASE COUNT          209 a          146 c          128 g          209 t
ORIGIN      
        1 taccctccag gtgtttggtg gctttttgac tgtcctgtgc tcagaaagat ctctctctga
       61 atatgcccag atgcatgtaa tgggtctgct ttctttaagg ccaaacaaga aggcaatgag
      121 ttgcgcagtc tgccctgctt tgttttcctc aagtgaaata tgattttaaa cctaaatgct
      181 gacaaatatt taaaatattt tatagttggt gaggttttcc acagtgcggg tttgttttcc
      241 attacatctc acaactctaa gtgctcagtg acagcctgta gaggtttcgc cataatccac
      301 ctttatccat taacagacac tcaatcacta aagtgcttac tagactaaac atatttatcc
      361 aaccaaatca cactttacaa tgcaatgctg ccaatcagac cccagctatt aacgaggaac
      421 tgctttaagg gattttggtg tttgtgctgt gaagagcatg cttacctcca acaaaccact
      481 aaaccaaatt aacatagctg tatcctcata aaagaaacca gatatcctgt tgtgaaaatg
      541 gaaagcttgg taggacaggg ctcttttgat ggctaacagt gtggcagacg aaggcttcag
      601 actacaaatc tggttaccac aggctcatta caaaactcta gcattaagct tttgctgact
      661 ttaaaaacaa aataaaaatt tatcatttgg gt
//
LOCUS       KCLJ01002989             366 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 333081cal ultra-conserved element locus
            uce-3475, sequence.
ACCESSION   KCLJ01002989
VERSION     KCLJ01002989.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 366)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 366)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..366
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="333081cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>366
                     /note="ultra-conserved element locus uce-3475"
BASE COUNT          104 a          100 c           91 g           71 t
ORIGIN      
        1 caatgccagc ccatctgcca ggccctgcac gagctggcac cgtgcctccc acctgctgcc
       61 actgctgtta cccacctgat ccttggagac ttgctccgac ggagcgctca cgccaagctc
      121 ttgcagagga tagacaatct gtcgtctcgg ccgcacggga gccatgtaat gaagggcaga
      181 tgtcagggaa tgagcacagg gatgctggaa ctgaaagaca gcaatccata tttcagcaga
      241 gagaatgtca gagcagtgca tcgcagatgt ctgctgcatg gcttcacaaa cacacagttc
      301 ttagttctgt tggctaaatc tgagacaaaa atcagcaaat aaacaaacat actcagagca
      361 gagaaa
//
LOCUS       KCLJ01002990             808 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 333180cal ultra-conserved element locus
            uce-7227, sequence.
ACCESSION   KCLJ01002990
VERSION     KCLJ01002990.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 808)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 808)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..808
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="333180cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>808
                     /note="ultra-conserved element locus uce-7227"
BASE COUNT          173 a          203 c          180 g          252 t
ORIGIN      
        1 actaaccaag agtcacgagt attctctctt tgcatctggg aaaggcacct ctcctcccag
       61 gcagagcctg tgcttttagt gtgatcatta caacctagta acaccgactg ggaaactgag
      121 tgaagactgg atttcaaaag acaggtaaca gcctcctgaa gtgccaagat gctactctta
      181 ggcctggaac aagtaattat tagcttacct gttcattagg ctcaaagctt atctcttctt
      241 tttccgtcct catcgctatt aactttgtgc taccggaagg gtctgtctta ctgtccaacc
      301 gctccagttt tgggggtatg tctggtaaac caatatcttt agtatcatct ttatctagca
      361 agtagcgaag tagtgcatta ttattcttct taggactcgc tggctcctgt ttaacagtca
      421 cctctgaacc aggagctgtg ctactggact cctggttcag ttctttgcct gtggcctctg
      481 ctgtgagctt ggccaaatct acaggagaac tactgtcctg caatagtctg tgcaaaattt
      541 tatgcttctc cttgagcgag gttccatgtg ctgaaccaga cccaggcaac cctcccgtgg
      601 agtccttgct aatgtctccc atggtactgg acaaaggtga aggctccatc tgatctgatt
      661 tggtggtcag caactgtaag agctttgtct ggctttttcc gtcgtgcagt ttattctgtc
      721 catcaggtct ctcgccactg acaaccggtg gcatgttgct atcgctgctg tctttctgtt
      781 ctcctgaatg gcagctgctc tctgcttg
//
LOCUS       KCLJ01002991             389 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 333290cal ultra-conserved element locus
            uce-5514, sequence.
ACCESSION   KCLJ01002991
VERSION     KCLJ01002991.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 389)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 389)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..389
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="333290cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>389
                     /note="ultra-conserved element locus uce-5514"
BASE COUNT          125 a           77 c           59 g          128 t
ORIGIN      
        1 taataaaatc caactttcag gcaaaccttc ttgtatataa aattgaagag tacaaagtgc
       61 caagggcttg tattagtacc atccattttg ttaacatttt tccaatttat cttgcgttac
      121 gaaccctcag agtactatgt ctattgtaaa tatttaagca ttactgttga cataaagata
      181 atgctgacaa attgagttaa catttctgcg gaggattact gaccatgtgt agtgcagaac
      241 aactttaaca cccacaccga gcgctgtgct catgccaaat tctgtttagt ctacaataca
      301 gcagcgtccc tcaaatgaat ttttagcttt gatttacaca aaacatgaaa caacctttct
      361 tggatcaatt aattgtttga ctttcctaa
//
LOCUS       KCLJ01002992             770 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 333389cal ultra-conserved element locus
            uce-2355, sequence.
ACCESSION   KCLJ01002992
VERSION     KCLJ01002992.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 770)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 770)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..770
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="333389cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>770
                     /note="ultra-conserved element locus uce-2355"
BASE COUNT          227 a          131 c          138 g          274 t
ORIGIN      
        1 tcatttacaa tgttgattgc atttttttga tggtttggct tcagaaacat gctgtggaat
       61 ttaaatttgt ccccctccca tgctaatgtt gtcattattt gtgtgtaaac acattacatg
      121 ggatagcaga aatgtaaatg agatttcgat gttgagttga tttataaaca gccagtctcc
      181 taatttattg aagttgtctt tgtgtcgttt gcacatgatt agcagcatat aacatacata
      241 gggtgccctt ctgtaacatg ttcagaaaga agaaatgcaa actgcatgcc attataacac
      301 caaatgaaga tcttattgag cttcaagatg ctttgaaaca tgtagttact aacttaactc
      361 tatctgtgaa cttgtcctca ttaactccat aattagcaag atcatgtttg atcttggagt
      421 tcattagaca ttgcagctgg aagattgttt cacttttaac acatcagaat agacaattaa
      481 agtgacaata aagaatcaat ataacttccc tgtttcttag attttttcaa ggttgcagtg
      541 tgtctaatta aacctggttt gaaacagtga aaaattaaaa agtaatgtgg tcatatttat
      601 tttgatttaa caggctattt tctgaaatgt gccctgggaa atagttccta cgttgggatg
      661 atttcagatt cagctgctga cttaagactt gagtagatgt tatgctcatg tcccttccat
      721 tgtccatgcc acatgcaagt ctccttccct ctttttactt tgtgactgaa
//
LOCUS       KCLJ01002993             646 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 333500cal ultra-conserved element locus
            uce-6633, sequence.
ACCESSION   KCLJ01002993
VERSION     KCLJ01002993.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 646)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 646)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..646
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="333500cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>646
                     /note="ultra-conserved element locus uce-6633"
BASE COUNT          181 a          142 c          140 g          183 t
ORIGIN      
        1 cggcggggct ctccccaaaa tccggcgtta ttgcagatcc agcctcttcc accaaacaac
       61 agatgcagcc tctaatgcaa atattgccat ttccctgctg aattagcctt gtcacttagc
      121 ccagaagctg gcagcgttaa gccagcttgc attttaattt ggccctgaag ttacttattt
      181 cattattgat caaacataat gctgaatcaa tgttcatctt gttacctggg ccatttccat
      241 gtaatacagt gatagcactg cctggagtta ctcattccca tcccaaagtg actttaccat
      301 aaaatcaatg cttgtttgtt actgatataa ggcagcatcc gtgggatgaa gagcgaataa
      361 agcagttacg ccaccgcgat ctgaaagttt ggacggaata tgtacgcgaa taaagacttt
      421 aatatttaaa tgtattttat cggcatcaaa atcatcctag ccaggccgat gggacagaaa
      481 atctcaggct gcaagatgac gggctttgat actgtaggtg ttgccatttg taagcgctac
      541 ctgggactta atgggggaat cgtttctcta cccagagtat cattacacag cagatgtggg
      601 ctgtaagctc ttccgggaag ggactgtttt ggaaaaatag taatta
//
LOCUS       KCLJ01002994             747 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 333612cal ultra-conserved element locus
            uce-6296, sequence.
ACCESSION   KCLJ01002994
VERSION     KCLJ01002994.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 747)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 747)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..747
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="333612cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>747
                     /note="ultra-conserved element locus uce-6296"
BASE COUNT          210 a          156 c          162 g          219 t
ORIGIN      
        1 tatcgctgtt ggttttattc attatatttg acatattaag cttctgtatc ttggcataaa
       61 ggacacaata ttgcagcata ttggcaagct catttgcttt tcacagccag tgttgtgtcc
      121 aaatagcagt ccctggggag caacacgtgg atatagactg caggaaaatg agcctcagca
      181 gcaggtggcc ttttgcagcc taatgaacac ggcaatctgt taccagcacg gcgaggcttt
      241 tcaccagaca attaggcaac taagcatgta attattcagg ccaacaagaa gagcctcttc
      301 tctaatttca tcttttcatt gctgtttact cacccacact cccctcatta atgagagatt
      361 ttccagtcta tgctaattgg tttcaataac attcatttca gttgaaaggg agcgattctg
      421 ttaattggga atcgaaggcg tcttttcatt tcgagtgcgt cctgccatgg aaatctgaac
      481 actctcaaca ggtttgagct aatgaaatta agttacacag ccactggtgg tgtaatagaa
      541 ataaagtaat ttattttcac tgaagcatgt gctataggtc ctgaacaatt aatccagctc
      601 gttggggaga gccatcggag gaggtgattt ggaacaaggc tgcgctgctg caattctcag
      661 ggtggtttaa ctgctgagct ctccagcacc acccaaaatg tttaacggca acgaggagca
      721 tttatggaaa cactaattct ttaagag
//
LOCUS       KCLJ01002995             726 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 333723cal ultra-conserved element locus
            uce-1299, sequence.
ACCESSION   KCLJ01002995
VERSION     KCLJ01002995.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 726)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 726)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..726
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="333723cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>726
                     /note="ultra-conserved element locus uce-1299"
BASE COUNT          249 a          106 c          138 g          233 t
ORIGIN      
        1 aatttccagc ataaagattg tgaaacaaga taaatacaat tctgcaggca aatttggatg
       61 taatgcaatg ttcaaataga aggcagtagg agagaggaaa tggagagttt attgtttcta
      121 tagctccaat atccattaaa agttagttac acagcaggtg aatgtttaga aataaatagc
      181 agctgggtga cctgggatgt cagggctcta gacaagggtg tatgtttgtc aatatatcct
      241 acatgtttta cagactcctc agggaccagg aaaagataca atttcacctt ttctgtgcca
      301 aaacatttta attatatctt cttccaagta cagcggttca gtaaccaagg aactgacatt
      361 gatgcatgtg ttgataaagc tgcaaacatt caaaatgaga ttaacaaaga ttttgaggaa
      421 agggtgacag ctaattttgt acagtattct gcatctaatt caggtcagtg taatgacaga
      481 atattttata actgctgtgt catctagaaa gacttttatt atgctttgtg tatttaaaga
      541 tgtatatgaa tgtacagttc tttaaacatc attcaagcag gttataataa catctgttgg
      601 ttgtagctgt aaaaaggaat aaacttaagc atttagaagc aattttacat atccatctgc
      661 attaatcaca gtaattcctt ttgtctaatt taccttgaaa atattgactt cagatgtgca
      721 atgtaa
//
LOCUS       KCLJ01002996             582 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 333833cal ultra-conserved element locus
            uce-2108, sequence.
ACCESSION   KCLJ01002996
VERSION     KCLJ01002996.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 582)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 582)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..582
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="333833cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>582
                     /note="ultra-conserved element locus uce-2108"
BASE COUNT          190 a          102 c          123 g          167 t
ORIGIN      
        1 cttcatacat aatgtcatta aaagcgtatt aatctggttc ccggtctctt gggagacacc
       61 ttaagatgat gatattgtgg gggttttttc cccccgaatt gtttaaaaaa aaaaaaaaat
      121 tctagcagat ttggtccctg tcagtcagaa ataattgtgt tcttaatctt gtccctgatg
      181 gatgactcgg agttcagcaa cgggccagct ccaatgacaa atacaatatt aatattcatt
      241 aactgctttg acaatgctaa ttttgatgca gtagtaaagg gccttccaaa gttagcggcc
      301 aaagcatcag agctgcgcaa ggtggcaaga taatttgtgc tggtttgctg agctgaaggc
      361 ttttaaagtc tatagcaaaa agctaggtac cacaaacaaa aaagagaaag ggaaaaaagt
      421 tctgaagcat tggaaggcag ggctgcggaa ataatacgat cacagtccgc taaaaaattt
      481 gacacctctg atgcagtttc tttgagtgaa atttctacaa agttgcaaca aaaaagcata
      541 gcatggtaag tcagcacatt cgtgattttg tttaatcttt tt
//
LOCUS       KCLJ01002997             392 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 333943cal ultra-conserved element locus
            uce-4687, sequence.
ACCESSION   KCLJ01002997
VERSION     KCLJ01002997.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 392)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 392)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..392
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="333943cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>392
                     /note="ultra-conserved element locus uce-4687"
BASE COUNT           73 a           97 c           86 g          136 t
ORIGIN      
        1 tctgtatgtt ccctttccct acccctgtct tctgtttctc cctcattttg ttttcctcct
       61 ctgtttggct tgctggttcc tccttccttg ctctcttccc tccttgcaga acaagatggt
      121 gaaaggcagc ctcagcacag agcagtcgga gcgggggtga ggggggaagt gtactcctgg
      181 gaatggatat aaaagcaagc acaggtgagt gggggagagc ttccagttcc acctgctgtc
      241 ttacatccag tgccttcccc atttctgtga gaaattaagg tgcttttgta tatgttcaga
      301 aaatttgtat tctctgctac catcctgttt attttttgta tttctgcagc agttccttct
      361 gttaaacagc ttattagctg ttacaactgc ct
//
LOCUS       KCLJ01002998             628 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 334049cal ultra-conserved element locus
            uce-3013, sequence.
ACCESSION   KCLJ01002998
VERSION     KCLJ01002998.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 628)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 628)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..628
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="334049cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>628
                     /note="ultra-conserved element locus uce-3013"
BASE COUNT          163 a          134 c          128 g          203 t
ORIGIN      
        1 taagtatttc tgctttttga cagagaaagt acaaaatttt ttttctactt cattattttt
       61 ataaagtttt ttgttttaaa ggttaaaata aaatgagcaa cctgcaatac catggtatca
      121 ttgcagctaa attcttggta aacaactgag atgatatctg cttcttcaga ttaaatagat
      181 ctcgtcctca gatttatact ggcagtttat gggttctgca aatgactgtc tcagcactgg
      241 aaagtaattc caccctgtca tatttgtctt tggaaattgt aacaaattat ggtgatttat
      301 aacatcaaac tcaactcttc cattttttcc ccagatggga acgtcgctga tggcgagatg
      361 ctgggccatc catttaggct gtgtggaggg tgacagtgaa acatgtttca tctctcttgc
      421 ctgacactct ctttcccttt gaggggagcc tgtcagcata actcaaactg tcagggcacc
      481 tttgtaaggg ggaacaaatc taaagctctg ctcatgccta ctaatgaggt gtgactgccc
      541 agccctgcct ggcctcggtg cagctcagtg cctctgaccc cttcccagtc aatggaactg
      601 gaaccttcat ttgtcttgga gtgaggac
//
LOCUS       KCLJ01002999             727 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 334158cal ultra-conserved element locus
            uce-1026, sequence.
ACCESSION   KCLJ01002999
VERSION     KCLJ01002999.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 727)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 727)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..727
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="334158cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>727
                     /note="ultra-conserved element locus uce-1026"
BASE COUNT          170 a          159 c          190 g          208 t
ORIGIN      
        1 ccttccgttc cacaacagcc acaaaaaatg ggactctgct cttggagccc ttcatccgga
       61 gacgtggacc tcctggctct ggcctctggt cggggtgtgt cctcagggtg ggacttggtg
      121 gccgagggag cccctctgcc gggcttgctc tggggaggat ttgctccatg gttggtgggc
      181 tcttcctggc tggaggagcc atggaaagcg agatcagcag ggtcctcctt aaggccttac
      241 cttactttta gacagttgtc attatctttg tctaaaggtc atggctaaat tgaataaaag
      301 gaaagctgtg tgttcctgtc gatgcacaat ggcagtattg actttcgtaa tccagtttgc
      361 tgaggggtga gagaattaaa ttagatatct aagcacagaa attgagagcc tttgaaaaca
      421 aagataagga gacagcctgt attttccttt tcctgggagc tctgggctca agattttgca
      481 ggtgtgtcat ctgatccatg gcttgcatcg atcaaaactg tgccaatgca tatttaatta
      541 gcaaggggac cctggatgca ttatggccat catccctata ttgaatggac tgtcagactt
      601 tctgaatgcc tccccaccgc ttcgttgttt ggggagcttc tgcattttgt ctgagcagct
      661 aaaagtttct ttgtttttag ctggtgatgc atacagcacc actgaggaga atacaaacaa
      721 gtaaagt
//
LOCUS       KCLJ01003000             793 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 334268cal ultra-conserved element locus
            uce-5246, sequence.
ACCESSION   KCLJ01003000
VERSION     KCLJ01003000.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 793)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 793)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..793
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="334268cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>793
                     /note="ultra-conserved element locus uce-5246"
BASE COUNT          222 a          150 c          166 g          255 t
ORIGIN      
        1 tggaagtcac acagtaagtt gctgaacagt gaaaatgatc attagaatta ttttaaacag
       61 attgagctat tgccgatcat tcgttctctc tcaaagcttt agtgactgct tgaaggagca
      121 aaggacttca aaatccccca tcttttcctt gagtaactta aatgaaatct gagctggaag
      181 ataaggatgt tgcaaaaaga caccggaaag acttgaatgg gttaagccat atctggctga
      241 gtcccaacag acataaaaat cacctgtgcc tgctctgaaa taaatcagtg tccttttctg
      301 ctgctgccgt tgtctggaaa taatgcaaat gcaatgggcc tgcagtgaca ttgtgccgca
      361 ctcgaaggag acacataata aattgtcccc taatactgtt aaagagacat tttcgtctta
      421 ctcagtagct tttgaggttg aactgtgcta cttactcgtt gaggattgtg atatggtgtc
      481 acgtcattct gctttattat ttgcttagcc tcttattgct tatatgcaca tttgcttctt
      541 gagtttaaaa atgcattttg ctgcttatgc tcaatgataa cgtttgctgg cttggagggg
      601 aaaaagcagg gagttttctt tccactttgt ttctgttgtt ttaatcattt ctttccaaca
      661 gcagctggaa cagatcatgg atccatatga tttggttcta ctgcattcat cacttggaaa
      721 aatgcacagc tgtgttaaag gaagacagaa agaatttgtc tgcccagcgg gaagctattg
      781 ctgttccata att
//
LOCUS       KCLJ01003001             414 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 334377cal ultra-conserved element locus
            uce-3064, sequence.
ACCESSION   KCLJ01003001
VERSION     KCLJ01003001.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 414)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 414)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..414
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="334377cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>414
                     /note="ultra-conserved element locus uce-3064"
BASE COUNT          152 a           54 c           69 g          139 t
ORIGIN      
        1 tatttgcaga aacgttttta atgctttttt aaatgagtgg acaaaataat gaagaaataa
       61 aaataacgca ggtgtagtca tttacattat agatggaaga ctgcataagc cactgatgtc
      121 aagatggctt ttctaaagtg tttatatgaa aactgacttg cagcttactg cctgaaaatc
      181 tcaccttgaa cttattatga gggcaataat aatatgaaaa aatacagatg gtatcctgcg
      241 ctatctggaa atttcagttt aaacagagaa agcttaatat atggtagatt atttatatca
      301 aagctgagta ttaatattcc aaatgctttg attttagatt actgaacact aaatgaaatg
      361 aactatattc ttggttactt acatatactg aatgtcaaga gaaatttctt ttac
//
LOCUS       KCLJ01003002             740 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 334482cal ultra-conserved element locus
            uce-8017, sequence.
ACCESSION   KCLJ01003002
VERSION     KCLJ01003002.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 740)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 740)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..740
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="334482cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>740
                     /note="ultra-conserved element locus uce-8017"
BASE COUNT          200 a          200 c          134 g          206 t
ORIGIN      
        1 taagttagtt ttaaacaaaa caatagggaa aaaaatcctc atcccaaaaa atgtgcttgt
       61 ccctgttgtg gtgttggact tagcagcaca gttgctgttc ttggaactgg ctgtgcaagt
      121 caaccacatg aaccaaacat ttgcttgctg gtgggaattt catgaatttt tccctttcca
      181 tgcaggcatc aaagcacgga ttatagtgag ggagagaagt tgttagggat atagactttt
      241 aagcagcact tgagcaagac aagtgtgcct gttttttcta cagagtacag ttgacaaaaa
      301 gcgtgccagc catcatgaga gcaatggctt tgccggtcgc attcacctct tgccagatct
      361 cttacagcaa agccattcct cctccacttc ctccacctcc tcctccccat cctccagcca
      421 gccgacaccc accatgtccc cacagacacc ccaggacaag ctaactacta atgaggtatg
      481 tcttacacca cagctggctg ctttcattat agcagcattg cctagtagct agtttgcaaa
      541 ggaactccag ccaatctccc ctgcctgtca cctttgttcc cacctcccaa ataacacatt
      601 tcagttctgt gtaagaagcc cttaactcta gagcagtccc acgccaaact tgccagttta
      661 ctatttttgc ttccttttag tgagtcatta attgcatggc attcatttta aactaaactt
      721 gactactcaa gccaatactc
//
LOCUS       KCLJ01003003             581 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 334596cal ultra-conserved element locus
            uce-4587, sequence.
ACCESSION   KCLJ01003003
VERSION     KCLJ01003003.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 581)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 581)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..581
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="334596cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>581
                     /note="ultra-conserved element locus uce-4587"
BASE COUNT          176 a           93 c          129 g          183 t
ORIGIN      
        1 tttttttgaa ggagctgaaa agaaaaaggt cttggaatta caagcagtta gacttggttt
       61 ttttgcgtaa tgactcctgg tatcccactg tgagaagact ttccccagct tctcgtctgc
      121 attcttcctc gttccctgcg ggagaatgag ttggatttgt ctgccatatt cacagcaatc
      181 gaggtgatcc aggttgaaag aaaatcaata agatgtgtcc atttatgcct cacaaaggaa
      241 gaaaggtcta aagaacagac atgggacgtg attcaagcac tagagactta ataagacttc
      301 tacttgtgtt tgaaggggat ggtaatttat attttacttt gaactttttt tatgcttcat
      361 aactattggg attcgggctg acatgggaag caaggaaaag aaggtttgat gctgtcttag
      421 aagacctaac ccatttggga aggccatgct caaaagttca aaaaattttg ttttagaaaa
      481 gattaaagag acatcatatc atcgtactga tttatcgcta ttgataaaac tggttaaaag
      541 tattttggat tggggtacaa tgtctttctt cgagaacagc t
//
LOCUS       KCLJ01003004             388 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 334706cal ultra-conserved element locus
            uce-4018, sequence.
ACCESSION   KCLJ01003004
VERSION     KCLJ01003004.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 388)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 388)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..388
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="334706cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>388
                     /note="ultra-conserved element locus uce-4018"
BASE COUNT          125 a           47 c           69 g          147 t
ORIGIN      
        1 tatggccact gtatttgtta attatttgca atttgaaggt acaagtagag gtttaaattt
       61 ttgttcttta aaaatgcatt taagttgtaa acgtctttaa agcctttgaa gtgcctatga
      121 ttatatgtga ctcgttgcag actggtgtta atgagtatat aacagtaaaa gaaaatgttg
      181 gtattttata agcacagaca attctaatgg taacttttgt agtcttacat ggatagacat
      241 aattgtaatt tgggaacata aacactactg aataaatcat gtggcctaat actgagaatt
      301 catatacttt tgtatgtttt tcattttatg tctgtttgct tatgttttaa tgtcacggag
      361 aacatcagta gatcttaaaa atccagac
//
LOCUS       KCLJ01003005             577 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 334810cal ultra-conserved element locus
            uce-7786, sequence.
ACCESSION   KCLJ01003005
VERSION     KCLJ01003005.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 577)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 577)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..577
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="334810cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>577
                     /note="ultra-conserved element locus uce-7786"
BASE COUNT          192 a           90 c          100 g          195 t
ORIGIN      
        1 atttaaagaa accagctatt ttactgtaag aaaaataaat actctaagga atggaattca
       61 ataatttcat tacattctaa gatgccaaat catctgtgag tggtttcttt ttaaaagaaa
      121 tcaaaatata ggacagatgt tggacaaacc acatttgagg tctatcacac actggcattt
      181 ttcaaattat tttggctcat ctattgaata aggtgtattt tgcttgattt tgaaaaggga
      241 aacatcagga aatatttaaa ggccaattgc tgccaattaa ctttgatcag caaaagttgc
      301 atttgaatct tttagattct tttgctgtct ggaataacac actattctaa aatctagcaa
      361 aacaacaact tgatgattaa tgtgtgttgg cagtcccacc acaagcttgc ttaacagctg
      421 gattttaaat aaacagctgt cttcactatg atgggaaaga agtctgactg ttttcatgtt
      481 tttctgttat taaaatgtga tcagaaattg cttttttccc ttttaagatg aaacagccag
      541 gcattagagt gacagtctct ttcagcagtt tggagag
//
LOCUS       KCLJ01003006             794 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 334920cal ultra-conserved element locus
            uce-5425, sequence.
ACCESSION   KCLJ01003006
VERSION     KCLJ01003006.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 794)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 794)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..794
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="334920cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>794
                     /note="ultra-conserved element locus uce-5425"
BASE COUNT          244 a          161 c          164 g          225 t
ORIGIN      
        1 tattctatcc caaaaggtgg agcaaaaaca ggttaccccc tcctcccctc aacactcttt
       61 agtcccgcag aactactgca tgcttcagca cagatttctc tgctagttgg atcccaggag
      121 gccttattga gtgcaatgct gctcggggag ttgcagctgt ataaagtgaa aaaatgtagt
      181 ttgtacgaat tgttctttac cttggtttgg gttcagcatg gcagctgcac tccgactttg
      241 tgtgtgacag cacaaaggac agcaaaagtg aaaagcaagt cagcaagtag agagacaaaa
      301 gcaacgatca gctaatacag ctccacatgg cctaactaat ttatgagaaa aaaactcttc
      361 tgttcattgg atcagcactc tgaggaggca ggtggaattg taggaagttt tcattgagtc
      421 tctggagcaa ctaaggaagt cactagagat tcttctcagt ttgaacttta tcagggtcta
      481 cgcttaatca atatggtatt ggaaaaagaa ttaattacta aagcagaata aaacagctgc
      541 attttaaact aaggatccat caattcagta atcttccagt tacaggctag gtgccgtgag
      601 gatcattttg acttcatgta atgaggaact gagggagttt cctcatgaac aggctgggaa
      661 ttcacattag cctatttcag ctatttgtca tcagtacaac tcatttctcc ccttctgaat
      721 tacaatttgt atttgatata ctgtcaaacc cacaaaattc ccatattcat ggaactgaaa
      781 gcattaatgt ggaa
//
LOCUS       KCLJ01003007             714 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 335028cal ultra-conserved element locus
            uce-7417, sequence.
ACCESSION   KCLJ01003007
VERSION     KCLJ01003007.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 714)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 714)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..714
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="335028cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>714
                     /note="ultra-conserved element locus uce-7417"
BASE COUNT          159 a          181 c          148 g          226 t
ORIGIN      
        1 cgtagtaacc atacccacag atgttgcatt tgaagtcctg aagctctgga gacagaggcg
       61 ctgtatctgg attatcattt accaacaaat ctgcttttga tttgttcagc cttaaacccc
      121 catctgaagg cacttgtggg ttttttgagg ccatggggac cgggcttgag ccttggccat
      181 cggtttgacc actttgcact tgcactgttt catctgaagc ttttggcgac atctgatgct
      241 cctcatttgt ctctgctgca tctcctgacg gggtacagac cacatcttgg gtgtcatctg
      301 catctaattt ttgaggagac ttcaagggct cacagattcc cccaacagct ggagatgaga
      361 aagccagcat atttctgtct gtcacctcat catgagggaa ggatggaaca tttcctccct
      421 tattgtggct ttcataattg aagccagcct tttcactcag cactgagctt ttcaagtcct
      481 ttttaacact ggaagatggc tcttggacat gcatgcaaag ttcctccttg ttacttaact
      541 ctgtcgcatc accctggtca gtgttttctt gcatctgctc tgcagaaaat tcttttttcc
      601 ttccagactc ttcactttca gtacctgtag actcaagggt ctgtacctca ccttcactag
      661 caacgtttct tagaggggga ttctttttcc ggaccatatc taccacagaa aaag
//
LOCUS       KCLJ01003008             710 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 335137cal ultra-conserved element locus
            uce-6983, sequence.
ACCESSION   KCLJ01003008
VERSION     KCLJ01003008.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 710)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 710)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..710
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="335137cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>710
                     /note="ultra-conserved element locus uce-6983"
BASE COUNT          184 a          184 c          134 g          208 t
ORIGIN      
        1 ccacagattt ggacatggac caagagaatt atttctgtcc cttgcgattc caatgaagag
       61 cacaaaggag ataattagcc caggatgctc cgcattgctc tttccatctt gcgcacattc
      121 atgcccacca aatgtgaaat gttcgccttt tcccctccaa cgtgatggtt gttgaactta
      181 tttttagtgt catttgataa gccttcctgc tcgcagagag acatcccact gacccagcca
      241 ctggtcattg tctataccag ttcccatcaa agcgggcgcg ctttgtcagg tttcgactcg
      301 aatatccatt ctgcctctga agtacagtat cgaaagtgac tggatcattt gagccttttt
      361 cttcagctgc tccctccttc ctcccccaca gtgtttccgc tcacgctaac ataatttggc
      421 atcgtcgacg tgacacgaca ctggtttttc taaaaattat aatacataca ttgtcgatgt
      481 ttggtgatgg ccggcgctcc cataaattta atttccaaat tgatggaaag aggtctttcc
      541 cactcggaat cgtacccaac gttcggcgcc ccctccgcca ctgaggaacg cacatacagt
      601 aataggtcat tcaatgtcaa aaggcataaa aaagatgagc aaaatcttca caggctgctg
      661 cttgctgttg cctttaatta tattaattaa actttgaaat tctcatgcaa
//
LOCUS       KCLJ01003009             484 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 335249cal ultra-conserved element locus
            uce-1119, sequence.
ACCESSION   KCLJ01003009
VERSION     KCLJ01003009.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 484)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 484)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..484
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="335249cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>484
                     /note="ultra-conserved element locus uce-1119"
BASE COUNT          142 a           93 c           97 g          152 t
ORIGIN      
        1 tagctagttt acttctctgg cttaaagatt agatgttttc ttttggtaaa gctggctatc
       61 ccaactggct gtattaaaat aaggaagaat ctcaatcaaa aagcctctcc taaggcaagc
      121 tttcttgtta atatgcacca acatgaaagg gtttcttttc atcctataca actacagtgt
      181 gtgtaaattg cagggggctc attggcataa atcttggctg tgacctctga ggtaaactgg
      241 atttacatta ctttctgaca agaattaaat gaaggccttg tggatatatg aacagccttc
      301 tagactgcaa cagatgggca tgaatgtgct ccctaggcaa actatcagtg acatctgtgt
      361 cctccaaatt ctggtggtct cagccaatta gcaggcaaaa tctatagact atttcatgga
      421 atattacacc gtttaattta gttctgagct cctgcagcaa ctgatgaatt atagtggaat
      481 gatc
//
LOCUS       KCLJ01003010             480 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 335357cal ultra-conserved element locus
            uce-7349, sequence.
ACCESSION   KCLJ01003010
VERSION     KCLJ01003010.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 480)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 480)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..480
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="335357cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>480
                     /note="ultra-conserved element locus uce-7349"
BASE COUNT          139 a           92 c          103 g          146 t
ORIGIN      
        1 tttttgtttg aattgtataa aactgttgaa acaaaataat ttattagctc agttttattt
       61 gcaaggaagg ttcagttgcc ctttatatta ttgttatatc tcaagacaat gtttctttac
      121 ttatgagcag atgtttgaaa tcctccagga gatttttgta agactatgga aatgaacttg
      181 gcatgggtac cggtctccca ggtggagcgg gtgaacacaa accttcttag aagtctcaga
      241 tcaaggctag tcagaaagag caacagagcc cagccaccaa aagcctagtg ctttggtgac
      301 tgacaggtac aggctctttc tgaagcataa aaaggaatgc taaatgatct cactgacaga
      361 ataaatcttc tatttgtttg gtctggacca gatgtgctaa aggctgatgt ggaaatgtct
      421 gctgatgcca atctcagttt aaatcacaat ttggcagcag ggccctctct gctctccccc
//
LOCUS       KCLJ01003011             651 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 335468cal ultra-conserved element locus
            uce-520, sequence.
ACCESSION   KCLJ01003011
VERSION     KCLJ01003011.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 651)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 651)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..651
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="335468cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>651
                     /note="ultra-conserved element locus uce-520"
BASE COUNT          187 a          123 c          130 g          211 t
ORIGIN      
        1 gaaaagagag ccacgaggca acaaggaagg gaaataaaac tgagcggggt gggtgggtcg
       61 ggggctgtga gcacgaagaa ggaagaggga ttaaaagaaa tatcaatcaa ttggagcata
      121 ttcactttcc cctgcacagt agattctatc agaagaaaac actgaacttt gtagtgttag
      181 cagcagctga aatttagaat tattgtttcc tcctaacaga agactcattt tccacggccg
      241 catttgcagc ataataagct ttttgttatt ttttcaatta gagtcaattg acctaacaaa
      301 atggttggca attaagtgat ttttgtaatg gtccgggggt aatttagtcg agcttgtcag
      361 ctgtgtttca tgaagccgag atgtcttttt ttcccctctc cctctccctc tctctcactt
      421 actccctctc tctctcaagc ataatggctc ataatttcaa aatcttttcc ttctgtttcc
      481 ctcacaataa ttcgcaatta caggaagttg ttggaggtga ttttttccta ccttgctttt
      541 tgagtcagta attttaaata aaatgtacat acttgtaaaa agggggctat tacagaaatc
      601 actttttgtg taaactcaat tattttatga atagtgacac cagtttctgc t
//
LOCUS       KCLJ01003012             640 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 335573cal ultra-conserved element locus
            uce-7344, sequence.
ACCESSION   KCLJ01003012
VERSION     KCLJ01003012.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 640)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 640)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..640
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="335573cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>640
                     /note="ultra-conserved element locus uce-7344"
BASE COUNT          178 a          111 c          123 g          228 t
ORIGIN      
        1 tttattaccc agcaggtcat atcctgtata tattttaaga acaaacacct ctgagattgt
       61 gacttggttg acatgtgtca ttgctgttgt tttcactaca gccttgtgga aaaactaatt
      121 accttttcat cttggtaaat tcagaggtca gtttaccact actatatcac aacatgacag
      181 ggaacatggg taattaggta ggctgtgtaa cctggatatt ccatggatct cattacatct
      241 tatttagaaa ggctataatt tgattggtgg aaaattaagg catctcctca tgggtcattt
      301 tatctttctg caataataat tcttggcttg attaaaaatt gatccagtgt cttaaagtga
      361 atttattatt gctgcaatct atcacccaca gacagataat ctggttccca tctttatctg
      421 atttgaaaaa tctgtcactt attatgtgtt gtttttttcc caatcattta aattgatggt
      481 ttgctgaggc aaggcgtgct accataggct tcttggagaa agcatgtatg agactttcag
      541 ccagtatttt ttactgcaag gaatctgact gtgtcaaata tcgattggaa ctgtgttgtg
      601 gcatcatttt ccctgggttt tggatgcaga gcaacaagaa
//
LOCUS       KCLJ01003013             794 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 335683cal ultra-conserved element locus
            uce-7763, sequence.
ACCESSION   KCLJ01003013
VERSION     KCLJ01003013.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 794)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 794)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..794
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="335683cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>794
                     /note="ultra-conserved element locus uce-7763"
BASE COUNT          245 a          167 c          154 g          228 t
ORIGIN      
        1 ataactggta taaagtaaca aatacgtttc tgtagacata ccacttaact ctaaaaaaat
       61 atatacatac atatatgatg gctacaaatg agcttgtgat tttcttccaa aagtatctga
      121 gcaggaagta aaacattttc ccagtggatg aaataacatt catttttgcc aatctaagca
      181 aggcagattt aaattttatg tgtgtccaac tgcttgttcc ccctcagcta ataacctgcc
      241 tgctggaagc atttcaaatg aaaaggagtt cacagttcct aagcccagct ctgaatatat
      301 ctgccatgca tgtaaacaag taaaccatta tgtttcttgt tgagataaag aataccatga
      361 taagtgggga cttttaccaa acaaagggct tcctattgcg agtgtggata atcttccaga
      421 aaaccctgtg ttttggcaaa tcacaccaga ttaatctatt aggcatctcc tttcatcatc
      481 aaatttccgc tgcctatcac agtggctgcc ttatcaagca ccctttactc aatagcaggc
      541 ccattcctag gatttcaggt gctggccttc cgagctcaga aaacaggtgt ccccactgtt
      601 ttcaggcagg aaaggtccct gcacagaagc ctgggaaagg gcaggggtat cagcctctgt
      661 tctacctgaa ggaacaggta acaggaaact gttgattcaa tgggctgact taattggcaa
      721 gcattagtca gcactgagtg ttttttgtga attaaaaatg ctcataggaa tccttcctga
      781 caaaagtttt ggaa
//
LOCUS       KCLJ01003014             493 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 335795cal ultra-conserved element locus
            uce-6648, sequence.
ACCESSION   KCLJ01003014
VERSION     KCLJ01003014.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 493)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 493)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..493
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="335795cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>493
                     /note="ultra-conserved element locus uce-6648"
BASE COUNT          175 a           90 c           71 g          157 t
ORIGIN      
        1 gcatgcatgc agcattccac ttttatgact ttggaataaa aatgcaaatg aatttattag
       61 cttaagcatg gcaccaaata gaaatttatg cacatacatt taaaaaacag atcccttgaa
      121 aataacgcag ttgcaaccta ttaattttct tttttgacag tttttaaaat tcccctaaaa
      181 aaatgaaaca gcatgaatac tgtcaatata tcacaacagc cacattaggt tttgtgatat
      241 acatcataat ataaagagca ctattagagc acaacctggg aaccattaaa tcattctaaa
      301 tcactgttac attccattag tgtcaatggt gaaaccacat aataggcttt attacaaact
      361 tcaccttggt aggccattgt ctctaataac cacttctcta tgatgtggta tcatacccag
      421 aaatccaggg agataataaa ggctccctta tttctttttt attggatggg taaagttaaa
      481 tttagctgta agt
//
LOCUS       KCLJ01003015             540 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 335897cal ultra-conserved element locus
            uce-897, sequence.
ACCESSION   KCLJ01003015
VERSION     KCLJ01003015.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 540)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 540)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..540
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="335897cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>540
                     /note="ultra-conserved element locus uce-897"
BASE COUNT          143 a           82 c           90 g          225 t
ORIGIN      
        1 taaacaaggt tttaacttac tctcgctcat ttccttatct ctctttaact tggatagagt
       61 ggtagtaatg ctcccatata tataatcgat tccttgacta gttttttttt gagcatttgg
      121 tctaagtggg ctgctcagtg aaatttgtac attcataaaa tagctgattg aaaagcaata
      181 tttcagataa atacaagcca gcgatctatc agcagttgta ataaaagctg ggcttcaggc
      241 tgtgatttta ttttgaaata ataagaattg ctttattctt tttacttgag ttaccatggt
      301 aattctgtcg tgtagcagtg ttatattgat ttagaaagtg gacagtaata tttcttttgt
      361 gttattctgt ttctaggggt tgatttctaa tttccacttg gagattactt ttataaattt
      421 cttaagtcct tccacttttt tctctagcag tgtaattttc ctctcacaca ttgctatttt
      481 ctgagcttat tggtttgctc ttattttaaa ttaaacttgc tggtttcaaa tattgaaatg
//
LOCUS       KCLJ01003016             574 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 336009cal ultra-conserved element locus
            uce-5500, sequence.
ACCESSION   KCLJ01003016
VERSION     KCLJ01003016.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 574)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 574)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..574
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="336009cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>574
                     /note="ultra-conserved element locus uce-5500"
BASE COUNT          177 a          116 c          113 g          168 t
ORIGIN      
        1 ccttgcaaag tcaagatcac acatgacaac ttttccatgt gttgggtagc tcccattttt
       61 caccgtgtca gttttctaat gtggattccg ataatgaaga aagtatttcc ttaggggaga
      121 aaactcatca agatgctgag cccaattgca tgtcatgaaa accaaggtct gaagccagct
      181 gaggacagga gcagttgaac aggtacggaa atctcactgc ttggcaaggt ctcagacaat
      241 ttttacttac ctctagtgta gtcaatacaa tcttctcaac tgaagaaaaa taagcctccc
      301 acaagaactg tgtctgctgt ctaagtgcta ggattttatc ctgatggata gacctgattg
      361 tagaaggaat ctgtaataca ggatgtaata tagtcagaag ctttagaaat ctcatcaaat
      421 taatatgctg ctgacaagcc ctctcctcca ttagcaggtt gtacagcttc agcactccag
      481 tccaatggag atgtgtgtca acagttaaag ccttgatgta aaacaaatga aaccctttat
      541 aacctctgat atgaatatat ttttttgatt gctt
//
LOCUS       KCLJ01003017             377 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 336118cal ultra-conserved element locus
            uce-3038, sequence.
ACCESSION   KCLJ01003017
VERSION     KCLJ01003017.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 377)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 377)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..377
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="336118cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>377
                     /note="ultra-conserved element locus uce-3038"
BASE COUNT          126 a           66 c           62 g          123 t
ORIGIN      
        1 aaaattaagc taatctgctt tgacagaaga gggctctttg gaaccaccta gtgagtctcc
       61 caaatatgaa gcagtaactc aaatgtcaat tacttttcca acagcagaca aattgctggc
      121 acactaatgc aatttaagga caataattag ataacaggac tacagagtgt accaggtgac
      181 agagtttctg agataataga atctagtgtc ctacttctta aatattaaca tcattccatt
      241 tcagtcaatc ggtttatggt aattttaaaa gggcaaagca aattcttttt attgctaata
      301 atattgtgct tctccagcat tagctttgaa ggttagcaat ttacagggtc aaaccttaat
      361 tatattattt ccttttt
//
LOCUS       KCLJ01003018             603 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 336224cal ultra-conserved element locus
            uce-5584, sequence.
ACCESSION   KCLJ01003018
VERSION     KCLJ01003018.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 603)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 603)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..603
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="336224cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>603
                     /note="ultra-conserved element locus uce-5584"
BASE COUNT          183 a          146 c          127 g          147 t
ORIGIN      
        1 agaggatggc acttgaaaag gattccccgg caggcacaac tccggccaac aatggaggaa
       61 tccccctctc caagcacctg taaactgaca ctgcgaacca gccattccaa atgctcatca
      121 acaggccata tatttaagca cagagcatcg cctaatctat ttttttcctc cccttcttcc
      181 tttaatagat cggagcacaa aagcctgaga gagggtgacc taccaaacaa aagggccttt
      241 gagttcctag gaaaagtaga cttggaggag gatggaagga atccaagtgg ccctattatt
      301 tccacttgca ctaattagac atttttctgt cagctattga gcactgctga gaggccaaac
      361 tcactgaatt catttctaaa gtgtttacag aagtttgcat ctgtttgtgt ctcttcagga
      421 ggaaaataag cacttcaata gcattgtgga aaatctaaac gaagcatcct attctgaagg
      481 gcttggcagt cttgcagctg cataatttaa ctcccgctca atgccgaaac ctcttgtgtc
      541 cctctccaaa cccaaatgga cgcaaaatgt agaaaagtca agccaggggg agaaacgagg
      601 cta
//
LOCUS       KCLJ01003019             731 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 336332cal ultra-conserved element locus
            uce-7281, sequence.
ACCESSION   KCLJ01003019
VERSION     KCLJ01003019.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 731)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 731)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..731
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="336332cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>731
                     /note="ultra-conserved element locus uce-7281"
BASE COUNT          248 a          129 c          114 g          240 t
ORIGIN      
        1 ttctggaaat tgatcttttc agtagttcag gttatgtctt aatggacatg actaattcag
       61 cttagtgtta actaaagcta tgtttgattt ttaaatactg tacagtttaa taaataaacc
      121 aaacaaagcc tcaatgtaga acagtcactg ccaatgtcac ccagtatccc tgcagattat
      181 gagaatttaa caaatgcatt ccagtggtct gcagattttt cctctacata cagcatttaa
      241 aaaacatgta ttaaaacaga ccagtttcca gactaaacta atggagaaat tacatttcag
      301 tgcaaaatat tttagactgc atttctttct agtattcctc aggtgaagaa gtggttgcat
      361 attattaaaa atgtaacaaa agcagctaat gctttcataa agagtattat gttagggatc
      421 cccctcacat ctttgccgta ttttgaaaac aaaataacat ttcctatagc cagcaatttt
      481 gtttatttaa atgttacata tactatctca aggcacatct gatgatatat ttataacaca
      541 gtaggtgtca aagtatgttt aacatatgat ttctccagga tccctcccct ttctgtattc
      601 caaaatggag gaactgaaag tgcggtgtca agactggcga tccatattct atctttggca
      661 agcttataca agcactattt taaatgtaat gtaaaagaac tgtaaactag gaacttcagt
      721 ttatgaaaca c
//
LOCUS       KCLJ01003020             505 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 336444cal ultra-conserved element locus
            uce-2814, sequence.
ACCESSION   KCLJ01003020
VERSION     KCLJ01003020.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 505)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 505)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..505
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="336444cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>505
                     /note="ultra-conserved element locus uce-2814"
BASE COUNT          113 a          156 c          141 g           95 t
ORIGIN      
        1 cttgctctgc tgcaggagtg acaggcagga cccagggcag gctggcagcc tcacagcagc
       61 actgcccagc ccggggagga ggtacctggg tttgccccga ggcactcctc cagcagagct
      121 gcccccacct ctccccgcag gaggctgagc cgtgccgtgt cttcgaagga gaaggctatc
      181 agctccaaac agccgagacc tttagctcaa atccattaat cctctttatt aaacccgggt
      241 cacctctgag tcctggcaaa ttaaccagca tctccccact gcaagtacat caagaggaaa
      301 cgcgctgtac agcgcctgta attttcatgg accagggctc cggggtcaga gggcttcccg
      361 ggctccagtc tctgcctttg tcaatttaaa agggaacatc ggcctgcgct tgtataaatt
      421 acgagagagg cagagcagag gcccagggcg ctctgccagc tccagctgtg ccactgtctg
      481 tgcccaggga caggagggac agcaa
//
LOCUS       KCLJ01003021             521 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 336554cal ultra-conserved element locus
            uce-6902, sequence.
ACCESSION   KCLJ01003021
VERSION     KCLJ01003021.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 521)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 521)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..521
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="336554cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>521
                     /note="ultra-conserved element locus uce-6902"
BASE COUNT          162 a           94 c           97 g          168 t
ORIGIN      
        1 ggtttctgat gctcactttg gaaaaatagg gacgtttaaa atcaaacaca aggttggtga
       61 ggaagtttta acaggaatat acttgagctg ctgttccccc aactgaattt tctccacagc
      121 tccatatttt gttctccatg tgtattagtg ttctgagagc ctgtcatttc ttatcagaat
      181 gagaaaggct aaagagataa tatttcaata acatactggc ctgatcataa aataactcaa
      241 tggaaatgtg taactgcctc aggcagcaca gcaggatagt cagcagtcag atgatttcta
      301 ttctgggttt ctttttttat ggttacattt tctgttatat cagacatacc ctcaagtctt
      361 agttatgctt ttattcaaaa ggagatctgc agtataaaga cctacaaaac ttattatgat
      421 atattactgt aaagaaataa aagttggtgc cacagtagca tattgataag gacaggcctg
      481 ccacattaat tgaccttttt catctcaacc actagggctg a
//
LOCUS       KCLJ01003022             419 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 336660cal ultra-conserved element locus
            uce-4555, sequence.
ACCESSION   KCLJ01003022
VERSION     KCLJ01003022.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 419)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 419)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..419
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="336660cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>419
                     /note="ultra-conserved element locus uce-4555"
BASE COUNT          150 a           65 c           52 g          152 t
ORIGIN      
        1 ttatgtaggg tttcaaaatg agatcagtga agacaaatca accatccaag tccatttcac
       61 tttttattat tcctctttgg atataaaaca cttcaaataa aagttctatt aataaagctc
      121 taaccacaga ttaaatattt ctgctgacat tatttgactg ataatatcaa tttcaaagtt
      181 caaattttaa taaggtatta caaagcatag gaagaaacaa gctaatcaag ccaagtttca
      241 tatttcccct ctttgtacaa aatgataagt gaatttaaag ctatgctttg tctctttaat
      301 atctgctaaa tatggatgaa ttactgaata tatatttatt cttagcctca tttgaaggca
      361 aatatttaca aggcttttct gttgtaatct gattttaata tctcaactga aaatgattc
//
LOCUS       KCLJ01003023             609 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 336768cal ultra-conserved element locus
            uce-3644, sequence.
ACCESSION   KCLJ01003023
VERSION     KCLJ01003023.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 609)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 609)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..609
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="336768cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>609
                     /note="ultra-conserved element locus uce-3644"
BASE COUNT          213 a          115 c          118 g          163 t
ORIGIN      
        1 tgttctactg atttcaactg acaggagcat tgagctggct gggaagcaag gtaaatgcag
       61 aaggtactat gaatatatta tcatatcttt atttagcaaa ttacagcaat ttgggaattt
      121 tgataggctg agacctcact tgtagtacaa tattcattga ccctgaaata tgtgaagtaa
      181 cctcgagatg cacaaaaata cgggcaacaa aatatcaaat tcacataagg aggcttcaca
      241 tttaaatgaa aaaaccaaga tattttgaac atacattagg gcaggatatg gtcctttgaa
      301 tgttattctc aatgctcgta ccagcagcaa ccgtcatctg caaaaggggg caacagagat
      361 tctgctgaat ggaacagaat tttgtacagt actacacacc atactgacag atgaacgtat
      421 cattcaaaca agcttatcca agagaacact gatgcggctc aactgaaatt cacataaaga
      481 aattgaaagt attgttacat ctcctggctc atgaagtact gagaacaagc aaattagatc
      541 actttggtgt tctgcactgt gttctcagaa gtggtctcct ggacagtcca ataacaaata
      601 aacccagct
//
LOCUS       KCLJ01003024             434 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 336875cal ultra-conserved element locus
            uce-5258, sequence.
ACCESSION   KCLJ01003024
VERSION     KCLJ01003024.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 434)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 434)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..434
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="336875cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>434
                     /note="ultra-conserved element locus uce-5258"
BASE COUNT          150 a           84 c           77 g          123 t
ORIGIN      
        1 cactgaaaac catcagggtt gaaatttcat ccaagtcttt cgtgacgccc agcaaatatt
       61 cccctcagat tattttacac cttgagggaa ttttggtctt tagttcaaca ctcttgctct
      121 gttcccaaat ggggcgctat ttaggggaat ttaaagagaa agctgagaag aataaacatt
      181 tactgagttc tcttggcatt cagtctctga aaaaccacag tataaactat tcatgctgct
      241 tcttacatct gtcaaatcaa aaattaaaag ccataaaagt gtaacactga aaatatggca
      301 ttagaaagga taaaggtggc caaaaataac aaggaaagta tattagccaa taaaatattc
      361 taactcttca tttaaaagtg catcatgggt aggacagaga tgactctgaa gcgttgctac
      421 tccagtatta cccc
//
LOCUS       KCLJ01003025             704 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 336980cal ultra-conserved element locus
            uce-6715, sequence.
ACCESSION   KCLJ01003025
VERSION     KCLJ01003025.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 704)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 704)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..704
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="336980cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>704
                     /note="ultra-conserved element locus uce-6715"
BASE COUNT          249 a          128 c          118 g          209 t
ORIGIN      
        1 agccatatcc actttgaaga ctaaattagg ttatcatcag actaacatga tctacaaaac
       61 attgtaaaaa ggttaaactc tcttagatgg ggttcctgga tatttatatg gaattacaaa
      121 tgctcctgtt agaagattat ccttgtaccc atagattaag gccaatgcat gaacactctt
      181 ttacaaatca atattaatta aaaattatta tgatcagaga actaaacaaa gggcctgtgc
      241 taccaaagaa agggtatgcc ccagtgacag atcactgtta aaacctctca tgccattggg
      301 tgatatttgc catatgtcca atgattgata gtaagattta atgagttctt acaagcaatt
      361 aaataatcaa gggttcctgc tgttacatgg catagcttga tagaacagtg acaaatgaga
      421 gaatatctgc aacctaatca aagggacata tttccttggg aacaaaataa tattatccac
      481 cagtgcaatc aaaggacaaa agaacacaga gaggacgcaa cagaatgaga taaattttgt
      541 gctcttttca ttattctggc catacagttt ccatttattg gatcctatta aatcagaaag
      601 acaattagga tacttaaata tgtttcattt gtcataaact gttagctagt gggtacatat
      661 ccatatccag tcaccttagg tctcctttcc ccatgaaaca ctat
//
LOCUS       KCLJ01003026             450 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 337092cal ultra-conserved element locus
            uce-8010, sequence.
ACCESSION   KCLJ01003026
VERSION     KCLJ01003026.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 450)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 450)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..450
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="337092cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>450
                     /note="ultra-conserved element locus uce-8010"
BASE COUNT          116 a           88 c           99 g          147 t
ORIGIN      
        1 tttttttttt aaccagtgaa ctcagaagag aaagcttcat taaaccaagt tctaaattgt
       61 tggggaataa taaaaaagac taacgagttt atgttaaatt gtgagaatag aacaaaaggg
      121 aagtgaaggg gtccttattt taaagctggg tttcaaaagt ttgagagagc ctaaagaata
      181 cattctcaga gacagcgttc aacggttgcc tggtcctcga acaggtgatt ggcttggtgg
      241 atcttctgca taaaacttca acaggtgctc accacctgtc tctctgtcac acagtctgtc
      301 tttggtctgg catctgtctc tgatgggcca tttcctaaac ctttatttcc gtcttggctg
      361 aggctgtccg ctttgcaatg ttttttgctg ttgctgctgc cttcttacct gagccagtat
      421 ttcctgaatt tttctctgag caagctgaag
//
LOCUS       KCLJ01003027             712 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 337195cal ultra-conserved element locus
            uce-5921, sequence.
ACCESSION   KCLJ01003027
VERSION     KCLJ01003027.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 712)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 712)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..712
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="337195cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>712
                     /note="ultra-conserved element locus uce-5921"
BASE COUNT          163 a          197 c          123 g          229 t
ORIGIN      
        1 tggctgagaa gtgtgatcct acgaggaagg gtgccgttgg ttcacctctt cacgctgcca
       61 gtcctcgttt tccacctctc cctgctcatg ccagttgtca aatctccccc ttcctcagag
      121 ttccctcgtg cagccctttg tgttcactga ctggatgctg ccctctcctc cagtgtccct
      181 gtctgcagcc cagccctctc ctctccgccc tcccccctcg ctacccctta ccctgggctg
      241 ttggcataat gagggcttga tttcaatact tcccctcatt tctctgttca ctgctctgca
      301 ggttaattca gattccaaac ttcaacaagc agctgttaaa catgtcatta acactgcttc
      361 ggctgcaaat gaaactctgc tattgggatt attccgggag ctatagtttt gtgatgagct
      421 ttgtcaatca cagctgacct gctgtgtaca gaatgaaact cagattatct tctttcttcc
      481 tcagactctt gtcatttttt cacaaagaat tactattcta ctccccgaaa gattgattac
      541 ttgcacaaat aagagagtct gagacattaa tacaaaattc acaggctttt ctttatctca
      601 aacctgcaac tccctctaca tttcctcctg gtaattatat tagaattgtg tacactagga
      661 attgccatct gattattatg aaactagttt tgtcatgaca aaaatgagct ta
//
LOCUS       KCLJ01003028             589 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 337304cal ultra-conserved element locus
            uce-2094, sequence.
ACCESSION   KCLJ01003028
VERSION     KCLJ01003028.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 589)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 589)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..589
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="337304cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>589
                     /note="ultra-conserved element locus uce-2094"
BASE COUNT          198 a           90 c          111 g          190 t
ORIGIN      
        1 tgtctaaaaa catataaata atgatatttc ttctcacata aatgggtatt actgatatga
       61 ccagctgcaa gatgagagtt ccaaatttat ctgaaccttg agatgggaga actgaaaact
      121 ttatgggaac ttttgattag ggtttgggta ggtggataat gaaagagtgt aacattgaaa
      181 tgtgcctaaa taacatgctg ttacaagcct tatgatagat ttgtgtttga cttaacagct
      241 tttggaacct aataaaaaga acttaattga caatttcttg aaattgctaa gaaaacctag
      301 tgatgttggt agggtataat aaggagtttt ctcatcactg tcttcaagat tgagcctata
      361 caaaggattt atctctgtgg taactctaag taattgatat acagacaagg tttggttcca
      421 atttgccagc aataaagttg taatagggtt ttctctgcaa ttttagcctt aatgtgctca
      481 ttccaaagag cggtattttt ccaagcgaac aaataacatc agtaaagctt acgatcagta
      541 atagccccac actgatgctc acattaaact tgttaaatca attcactag
//
LOCUS       KCLJ01003029             453 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 337413cal ultra-conserved element locus
            uce-4463, sequence.
ACCESSION   KCLJ01003029
VERSION     KCLJ01003029.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 453)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 453)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..453
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="337413cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>453
                     /note="ultra-conserved element locus uce-4463"
BASE COUNT          154 a           80 c           69 g          150 t
ORIGIN      
        1 tgaaatttac catgaaaatc tgaaagttag gtttgattta caatctggtc agcaagctga
       61 aatttcaaat aaatggatat gtacatagtt aatccaagtg catcaaatcc agttcagcta
      121 ttttcttttt cactagatat ccacatgtta ttagaagtac acagctaacc aggtttcatg
      181 cagtagacaa aatagcattg tgggattaca ttagtccgac agctgcttta tgactatagc
      241 ttccagacca atttatttaa tattgatctt taaacaaaca tcagtacaaa taaatttgag
      301 cactctagtc ctgagatttt gtatctataa aaggggccaa tattcagaga agcagttctg
      361 cctgtatttc actctttgat tctgttttct ttgatcctac taggtatcaa atacatcaat
      421 gccaaattaa aacaaatcta tcctgagata aag
//
LOCUS       KCLJ01003030             521 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 337517cal ultra-conserved element locus
            uce-7426, sequence.
ACCESSION   KCLJ01003030
VERSION     KCLJ01003030.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 521)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 521)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..521
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="337517cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>521
                     /note="ultra-conserved element locus uce-7426"
BASE COUNT          159 a          101 c           80 g          181 t
ORIGIN      
        1 atgtatgcaa agcagaaatt tgttctaatc ataagaaata atattacagt cttgacagag
       61 ttaaagtaga agcaaacacc ttatatgtct attacagtaa tcctatgttt atgcatgagg
      121 taacaaacac acttaggtaa cagctttttc ctcttgggca atgccttata gtcctccatc
      181 agtgaaagcc aagaaaccaa ctctaagctc atttaagtgg attttgttct tggtgatcca
      241 tgaaatgctc tgtcttttta tctgctcttt atacttttaa tgtattcccc atagaatgga
      301 agtgtacttt tcctgcagtt aaagactaag gttataaata acatcagtat ggggtagtgt
      361 gcttgcagct cacattttgc tcaatgattt tccataaaac ccattgattg ttgttaaata
      421 caaaaagctc cataggatcc tctcacttct atggtctccc ctactgtttt ttcttataag
      481 atacctccct gttgaaaata acctttattc agtctataca a
//
LOCUS       KCLJ01003031             666 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 337624cal ultra-conserved element locus
            uce-3231, sequence.
ACCESSION   KCLJ01003031
VERSION     KCLJ01003031.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 666)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 666)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..666
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="337624cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>666
                     /note="ultra-conserved element locus uce-3231"
BASE COUNT          177 a          160 c          138 g          191 t
ORIGIN      
        1 aacacactga atgaaatatc aagcaaattc ccatcaaata gcagcatgcg tcaggtgtaa
       61 aatcccgtga ctcgtccttc tctgatggcg ccaaggcgct tccaacctaa gagcagttca
      121 gtgccatccc ttcccagatc cctggggttc ttaattagca atgcagtgct aggtaggtga
      181 tgcagagaag aactgtttta ttgatgccgg tagtctgggc taaagcacag ctcctgctgc
      241 atttcttcca gcagcgcgag ctgaatcttt tccctcattt gatacagtga cctctcaagt
      301 gcatcattgc cctgagggct gagggcagtc cagcaactgt taaacccctt gggttgataa
      361 tcttctccca catttgccct taacaccaga cataccacca ttagctacag ctccactggt
      421 gctcattaga gccgatcaat atagactaac ataaagaatg ctgctgcgcc ttctgttatt
      481 tttcagttac tgcaaattta cagacttttc acctacaatg cggggctttg ctgctgtgct
      541 atgtgaggat ttgagaccta aaagaaaaac ctgcagtttt tattagatgt ctaaatgtta
      601 tttatcaaaa tacctcgtta ctagagagcg gatgggagat gttctgcaca aaattctctt
      661 tggatt
//
LOCUS       KCLJ01003032             799 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 337734cal ultra-conserved element locus
            uce-4650, sequence.
ACCESSION   KCLJ01003032
VERSION     KCLJ01003032.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 799)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 799)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..799
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="337734cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>799
                     /note="ultra-conserved element locus uce-4650"
BASE COUNT          246 a          155 c          123 g          275 t
ORIGIN      
        1 agcccatgat attacacaaa taaataacac ttagcattat cttcagcacg accatattta
       61 ttaaacagtg actgagggca gcagtaacca tttttattgt cccatacagc tcttattttc
      121 taattaaaca gaaggttatt tccactgcca atgcagctat ttatcttatt tgagtgttac
      181 ataatatttt ttgccagcca agcctgacta taaagtgttc tgtgtggtga actgtggccc
      241 aacttgcttt cctgtttggt aatcatagaa atgggccatt tcgtgctgtg ttaataaata
      301 aactttttgc aatttctcct aaaacatgat aaagcttata ctttgtcctt ccctctagct
      361 tcaatacaag ggcaatgagc tgtattatta aagatatagg tcaagcaaac ctgatgattt
      421 caatcctgtg gggtgcttta gaaactattg tcatattact gagatcattc tgctgttcct
      481 aattattcct cttggttgcc tcacatttca agtgatttct ctcacactta tgtcaaaatt
      541 tataagctac tccctgtaac aacactacat tatttcctca cttgttaggg taatatagga
      601 cagaaactag gagaatgctt taatctagct gacaaggata atgtagtcta gaaatgtaat
      661 aaactttgca ttctactaca aagttgtggc tccctaccat gaaacatttc atatagatag
      721 acatcttaga aaaactaatt gctacaataa cttgcatatc ctcttatctg agttgctttt
      781 atcagaaaaa tgtatcagc
//
LOCUS       KCLJ01003033             704 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 337845cal ultra-conserved element locus
            uce-5261, sequence.
ACCESSION   KCLJ01003033
VERSION     KCLJ01003033.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 704)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 704)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..704
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="337845cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>704
                     /note="ultra-conserved element locus uce-5261"
BASE COUNT          226 a          127 c          139 g          212 t
ORIGIN      
        1 aaacaaagga caattgaggt gggtaaatga aaggagacct tgcaagctac aacataccaa
       61 aaaaatcctc ttcaaactgt actgcctttc agggagggtg agggggctga taagtttatt
      121 tacactttta aaaagcactg ccaatcccaa tttatcagtt actgtcttgt gacaatttat
      181 tcattgttca ctgttagaag ctagaagtta cagaggaagc atgattggtg atagcttctc
      241 tatttcaata tggtataata gagataacag agtgcccaaa agctctacag ccgccttttt
      301 gtctgctttg tctcttttca ttactctatc agaatcttca tttaatataa tccaaaaaag
      361 caaggtaatt gcttcactta tcagttatca tcgcactcac atacttatca tgtcaaaatt
      421 atttatgtgg atggccaggt tgatcttgct gcatttagaa gcttaaaatt tgaataactg
      481 ttctgccagt taggttatca aaattgcagc ataaacaatg agtttcttca ttctgtacct
      541 tcgagggaga ataggaagca tctcattgca ggactagttt acccgtggct gaacaccgct
      601 ccagggagac ttacagcaat tcttgagtgc tggggacagg cttcatttgc tagatgaaca
      661 gtaaataaaa atggcatgat ataaatagag acaatagaga gaga
//
LOCUS       KCLJ01003034             385 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 337956cal ultra-conserved element locus
            uce-5204, sequence.
ACCESSION   KCLJ01003034
VERSION     KCLJ01003034.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 385)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 385)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..385
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="337956cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>385
                     /note="ultra-conserved element locus uce-5204"
BASE COUNT          117 a           72 c           64 g          132 t
ORIGIN      
        1 aaatgaccat gttagtcata ccttcttcag aaggaataat tctttctttt attaatataa
       61 aaccacaatg tcattatgtc acccatgcat ccactgtgta attactccat tttaaagaca
      121 aatccattgt cttaggatgc atccatcatg gatgtcacct ttagcacaga aggtgaggca
      181 ctaaatggac accttttact aatattaatt tctatagagt catcaattgt gaatagacta
      241 tccattgttc tctttgacag agacaggcca atgacaaaga ttaaattatc catttttgtg
      301 gaagcgaggg atctgcttcg aagagtgctc tgtgagattt tgcttttttg gcctgagtat
      361 attacatcaa tctacagttt gttca
//
LOCUS       KCLJ01003035             668 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 338056cal ultra-conserved element locus
            uce-3257, sequence.
ACCESSION   KCLJ01003035
VERSION     KCLJ01003035.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 668)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 668)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..668
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="338056cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>668
                     /note="ultra-conserved element locus uce-3257"
BASE COUNT          226 a          112 c          120 g          210 t
ORIGIN      
        1 tgcacatggc aggatttcac tcagcagctt gagaaggtca attaagtatt aaatagcacc
       61 caggataata ggtgccatgt aacattatca tgagctgtgc acaagggcat atctaaataa
      121 aatgcatagg aaatagcatc acacaaatat gatctacatt ttttcttgat caaagaggct
      181 gaggaaaaaa ataattaaaa agtaaaagcc ttatgcaatg agatttaaaa gaaaacttcg
      241 ggggctgata agacgcatct ggcacaactt caaagtccat caaagtacat ataatcaatg
      301 tttgtcaata gcagttttgc atcctttaat ttatctttca tggatataaa gcatgatgtt
      361 attaggatcc agtccatacc ttaattctgt ttgagatttg atgaatcagg gctctattaa
      421 aattcagtgc aaatcagctt actcaaggac acattacata aagtcatgtg ttatctaact
      481 ccttttatct tgctgtcttt ctaactagtt aaagaatctg gaatttcata aacttctatt
      541 tgtggctggc cgccaacata ttgcttgtag gcacctgctt gtatatgtgg catagtcagg
      601 ataccaaaat tctttgtgta tttttaaatc tcctttagga atgttgtaag gaatcatgag
      661 aaacaaag
//
LOCUS       KCLJ01003036             695 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 338170cal ultra-conserved element locus
            uce-2809, sequence.
ACCESSION   KCLJ01003036
VERSION     KCLJ01003036.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 695)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 695)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..695
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="338170cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>695
                     /note="ultra-conserved element locus uce-2809"
BASE COUNT          211 a          160 c          171 g          153 t
ORIGIN      
        1 aggcagcgac agcaaagtgt ggaacccagg catgaccagg ggagaaagcc cagagagcag
       61 ttcaaaggca atcgggtgct ttccttaatt tcaattaaat cctaactgcc ccttcacatc
      121 acctaatcac tgaggggctg attcagctcc ttctgcaaaa caggacatgt atcaatagcc
      181 agagccaaac actccttcct ggaaatctgc agtgcacaat agtaaataca gagaacgggg
      241 actattcatg tgttaacaat gcagcggcag cagcccttta ttgtcacaca cattgttaaa
      301 cccacaaaga gcaactggta ggttaaatct attttagctg ggaaagcttg acaaaaatcc
      361 ttgccaccaa gcatttgata ctgatcacag tgtcacatca gggaacagcg agctcaaaag
      421 aacgagtcat ttttttttat ttctgaactt tagaggcaac ggcctctcct cttcgctggc
      481 tccccaggtc ttagtcctct tagtaggagg tggtccatgc cactcaatga gagcaaattc
      541 acaggggtgg ggaggggagg gtaaaaaaag caggaaacat agaatgctgt attgaggcag
      601 cacaggtgga tgtgaacaga agcctctttc tcaggggaaa tcaaatccaa acctcgggac
      661 ggcagcaaag ggtgtggctt gcgaggcagc aggac
//
LOCUS       KCLJ01003037             777 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 338280cal ultra-conserved element locus
            uce-1971, sequence.
ACCESSION   KCLJ01003037
VERSION     KCLJ01003037.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 777)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 777)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..777
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="338280cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>777
                     /note="ultra-conserved element locus uce-1971"
BASE COUNT          225 a          153 c          131 g          268 t
ORIGIN      
        1 ttctgcattt cattagtcag ctttacttat tcatttcatg gaaaatatat cctatttctc
       61 tgtcatctcc ctttaaagat atgctacata taatgtttat ctttgatcag acttattcag
      121 cagatagcag cagcttttgt tttcaaaaag tgaccagaga attggaagtg tgtagttaag
      181 acacctcata cagctctgtt tttctgtact tctctcattc tctgccaact ggtacctcag
      241 tcttattggt atccaataat aagcccgatt acagctagcc ctgggagaca tgacaaaaag
      301 agagtcctca tcttgcatta attgctcgta ttgaaactat gccacatctc tcgaagctag
      361 atgttgctta gtatcccttt gatatgataa tgacatgctt cttagcagat gaatatgcaa
      421 attaaaagca gtaatttggt ggcatgcacc tgctgacact gcactactat gcttatgtgc
      481 tcctctgtaa cactgcagct acacaaaagc atcacagagg taaaattaaa ttctaatgtc
      541 gtatatatta aacagatgct tccacttttc tttgtatatc tactttttac agaatttgct
      601 attggaatct cagttctccc tacatgcaat tagtggacat ttatgtgtca tacacagaaa
      661 tgtacttgga gctatttaag ggctctgttt ttaaagaaat ggtttacatg aactgcactc
      721 taaaagggat ttttttccct tcatagcaga gaggcagagg attttaatct tgatgca
//
LOCUS       KCLJ01003038             484 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 338389cal ultra-conserved element locus
            uce-7459, sequence.
ACCESSION   KCLJ01003038
VERSION     KCLJ01003038.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 484)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 484)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..484
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="338389cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>484
                     /note="ultra-conserved element locus uce-7459"
BASE COUNT          138 a           87 c          129 g          130 t
ORIGIN      
        1 tagagcccat ccaggcccta cccattttaa aaattgtcgc agtttctctg aagaaaatga
       61 catgggggct ttcaagcaaa cccaagggtg ctccctttgc atatgcagtt tgtcagctgg
      121 tggtgtttga ggatttttgg ggtgatattt cagagcctgc cgtgtctccc ctgcccggtg
      181 gcaatgatga atgccaaaca ggagagaaat taatgctggg gattttggtc aatgtcagcc
      241 ctttcttcac tgtgtcaagt taaacaaaca agatcaaggc aaaggaaatg gtaattgtct
      301 ctctggagat gagctgggga taagagcagc attgttgaat ctaaatgcag aaaattttca
      361 caggttgtgt ccagcattag caaaaaggag tatttatttg cttaaaatga ggggctgcag
      421 tgaaaaagca aaccactttg ggagctgatg ctgaaaatgg gagagaaggt tctggctgct
      481 ggaa
//
LOCUS       KCLJ01003039             568 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 338495cal ultra-conserved element locus
            uce-5063, sequence.
ACCESSION   KCLJ01003039
VERSION     KCLJ01003039.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 568)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 568)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..568
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="338495cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>568
                     /note="ultra-conserved element locus uce-5063"
BASE COUNT          126 a          126 c           95 g          221 t
ORIGIN      
        1 ttttctgctt tctctgtact cagcatcctt cttggcagtg aatgaatata taattttggg
       61 ggtaaaagag tgcaatcttg tttcatgaat ctttattctc ctctattctt tataaatctt
      121 tattctgccc tttcacttcc ttttcttttc ctactgtctt tttttttgtc tttatctttc
      181 ttttcttctg atgccctccc agcttttcat tactgtcatc ttttttccca gccactgaac
      241 ccttgatgtt gttctaattg acagacgggg tttaaaagca cattcgaaag cgcctgtctt
      301 tttaaataga ctcctgtctc atcaaaagat gtacagcaac attccattag agcacatcat
      361 ttgaaaatag attgggcttt tagcaactgc actcatattt ttatagttag gctgttctgc
      421 tgggatcgtc cctccccttg ccagccccca ccatctcctc ttagggaggg aaaggggaaa
      481 agatacatta aagagagata aatgaatttt gtttgggttt tctcctctgt gtggctcttg
      541 ttctgcatgt tatttatcat ggccacag
//
LOCUS       KCLJ01003040             494 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 338604cal ultra-conserved element locus
            uce-263, sequence.
ACCESSION   KCLJ01003040
VERSION     KCLJ01003040.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 494)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 494)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..494
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="338604cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>494
                     /note="ultra-conserved element locus uce-263"
BASE COUNT          183 a           93 c           74 g          144 t
ORIGIN      
        1 tttggaagca ctgattgaat aataagccaa gcagcttagt gtatcacatc tctattaaat
       61 tctcttgccc ttcctctaaa tgcaaatctt tctgtgtaac actgtgccta atctactaca
      121 actaattaat ctgtttgagc tgatgaaatg ttacctctgc attttttgtt ccttgtatac
      181 aattattgta acagtggtga ataaatcaat attcccaatc caactgtaaa aaacaatcaa
      241 gaaaagcagt gcttctcagg gaaaaaacac caaataatat ttattaactc tgtctcaatc
      301 cacagcagag cctaatacca ttcaagcatt ttctgcaagt gtaataagca aactcaaata
      361 catgatgaaa gtggcacatg ccaataattt caccatttta cactgcagag taattgaagg
      421 atttaatgag aaacaaacca ataaaaataa atagaccatg cgagaggagg agaaactgat
      481 ctaaaatgga agtt
//
LOCUS       KCLJ01003041             549 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 338714cal ultra-conserved element locus
            uce-5231, sequence.
ACCESSION   KCLJ01003041
VERSION     KCLJ01003041.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 549)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 549)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..549
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="338714cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>549
                     /note="ultra-conserved element locus uce-5231"
BASE COUNT          132 a          123 c          149 g          145 t
ORIGIN      
        1 aaaacaggga agaaagcaga gcctttgcat tattctgtgc tccgtccgga gcgcaaatgc
       61 tctattttta cacaccttcc catctcccct gagccccggc ccctcctcct cctcccgtgc
      121 aggcaaagtt cttgaatcag cagattctga gcttgggagc ggtaaagagc tattgaggga
      181 cggactctga tagcattaca accatccatg gagccatttt ctgtggcgaa tcgctgagtt
      241 ctacctggtt atctcctgcc ttgcacatca cttccgaatg acatgctctc agtctgggca
      301 aaaaatgaga gttttttttt aagagctggg atttcaataa tatgtgacga aaggatgaga
      361 ttactttctg aggtgggaga aggcgaggag agaggaagaa gagatgaaga gcaagttctt
      421 ggtcctttat ggagtttcac agcaaggcta ctctcttggt ggtacgctct tctttggagg
      481 gggctgggag aagccctcca agaggtaggt gttcgtgcac tgcattgaga ttgtctggct
      541 gcagagggc
//
LOCUS       KCLJ01003042             620 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 338925cal ultra-conserved element locus
            uce-2800, sequence.
ACCESSION   KCLJ01003042
VERSION     KCLJ01003042.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 620)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 620)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..620
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="338925cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>620
                     /note="ultra-conserved element locus uce-2800"
BASE COUNT          167 a          112 c          124 g          217 t
ORIGIN      
        1 actctcattt ccagctctcg cctcttcctt cccaacacta atgcccatta atatccagaa
       61 agtgtcggtt gtatccaaag tttcaaatcg atgaaaaata tattggattt aatatgtttg
      121 gcttaggaaa tttgttttgt gtgctgcagc ctagtgcagc ttgctctgag cttacctctg
      181 tttgaattag agggtttcgg ctcatgtgca gctcagacat tggcccacaa gaccgtgaag
      241 cgtggctgat ttttggagaa actactaagt agtttctata gtgataatga tgtactatgt
      301 gcacctattg ggaatatata aaattagaga gaatttctgt ttgctttggt cctctttcta
      361 gaataattac aggaactgcc attcattccc attctgttac cctgattatt ctagaataac
      421 ctggttatta aggtttaggc gtgtttaaga acatactgca aagtgacaac ttgtcatgtt
      481 ggtattatca atactttaaa atttccatat tagtgaccca atttcctcaa gattcctgag
      541 tgtttaattt ggtggggaga aggagggagg ggagtaaatg atgcctctgc cttttctcta
      601 ttcaaagtaa ctttaatttt
//
LOCUS       KCLJ01003043             709 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 339034cal ultra-conserved element locus
            uce-5846, sequence.
ACCESSION   KCLJ01003043
VERSION     KCLJ01003043.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 709)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 709)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..709
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="339034cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>709
                     /note="ultra-conserved element locus uce-5846"
BASE COUNT          209 a          144 c          165 g          191 t
ORIGIN      
        1 ggaaaggtaa gttataatat atttcagagg tgaaggaata cttatgttac tgtttccatt
       61 gcaatatcat agctttgcta atggcagcct gctgcgcaga aaggaagaaa ggggaagaaa
      121 gggaacctgg ttaattagag tacagttgct gctttattgc agcattactg ctaagtgcac
      181 tgagatgcct tcccataggc aggtgctggt ggctgtacag ctcatttagc ctgggtgagt
      241 aatgtcagat caggaggaga gaaaggcttg tgtcttcaaa ctttcaatct gcctccatta
      301 tctgtgatca aggtggaacc acaggggagt ggaattactg gcaggtctag gacaagtgaa
      361 gagacagtga atctataaga catattaatc atctttccct tctcttggct ggcgccagcc
      421 tgtgcctccg actccccggc gccaggcaaa tggattctct gtccccacag gtacaagcca
      481 gtgcctttca ggggcaagtc atcagaataa taattactga cactgctgag atcagcccta
      541 accagtccaa aagataggag agaaacacat ttcctgaact ttcatactgg taggcaccaa
      601 gatttcaatt acattaaaga ctttcaaatt atataattct gaatctaggc ttctcagtat
      661 atcaccaacg taatgcaaaa cataatttag atctgttgct gaggtgtga
//
LOCUS       KCLJ01003044             483 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 339143cal ultra-conserved element locus
            uce-1907, sequence.
ACCESSION   KCLJ01003044
VERSION     KCLJ01003044.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 483)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 483)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..483
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="339143cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>483
                     /note="ultra-conserved element locus uce-1907"
BASE COUNT          142 a           96 c          104 g          141 t
ORIGIN      
        1 catttaaagg ataaaaagga ttcatattac aataaaaatc atctctgtgc tccccagtcc
       61 aaactccagc ctcagctgtg gccagcaacc caagaggagt cattactgta actaaattag
      121 agcgtttgtt ttccttccct caaatccaat tgtggaggag ctgctttatt gcaaaacaga
      181 cattaaaatt ccagctagac ctccgagaga aagtaatttc tattttatca gcactgtaaa
      241 gctgtcttta tgttctgaag caggaaatat tgcagggata tttatagctc cagcaccaaa
      301 gccagtttga atagaaatgt taccgcggtc ggcagagctg tcacattgct cagtggagca
      361 gggaatttta gtgaatttgt gaattaccct ttcagtcttg acaagtcttt cagagtgtgt
      421 gtctggagct gctttgtgct tccaggataa tgattaaaga ctgggattgc tccaggagga
      481 gat
//
LOCUS       KCLJ01003045             946 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 339251cal ultra-conserved element locus
            uce-1412, sequence.
ACCESSION   KCLJ01003045
VERSION     KCLJ01003045.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 946)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 946)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..946
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="339251cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>946
                     /note="ultra-conserved element locus uce-1412"
BASE COUNT          298 a          182 c          186 g          280 t
ORIGIN      
        1 aacagatttg atgcagaccc tgggcaaaaa ggcaaagcaa acaatgagcc aatgtttgtg
       61 ctgtaccgtg ctatgtgact tgtgtcagtg cccagtgcag ggggactccc ttgctgggga
      121 gagcacagaa gagtaaagac agctttactg acctgtgtgc tgccgccgat gcttggtgag
      181 ggcatgacgc gtcccgccgg caaagccaca gaggtcacac aggaacgact tctcgcctgt
      241 tgcaacaata aacagatgag ggactgcgga ggtcacagat cattaaaaca tatctatcaa
      301 ggctttcagg gttactaatt cctccaatca aatgtttcca tgtaaatatg tcaaatggga
      361 atgaaattac cactgcggtt tattgactgt gataaaatct gaaaagcacc actgaacata
      421 attacatact tgtcagaccc ataaaaatta gctttattat caatggaatg gttttgtaca
      481 acttcatttc tgttagatgt cttccagatg gggctgcttt atgcacttga acagttttta
      541 tgcatatcct gattttttac aattcccata catctggcct ttctgtgctg agtaaagatt
      601 gcctggaaaa aaaagttaat atactgtata tatgattctg cttaaacaaa atacatttaa
      661 tttactaaca aattaaaggt actgagaaat tttcaacaga ctaggtcaca gtcatcttta
      721 gttaccttct atttactaat aagtattaaa ttattttctt gaatacaaga agagtgcagg
      781 caacaataaa agccaaatta ttcagtacca ctggcaattc agcactgttt atgtttctaa
      841 agttttcatg gcataaagaa aacaggtctg gggattgctg ctgaaattgc agcagaactc
      901 acattgttcg tctttaaatg ataattcttc attccaaacc tttgga
//
LOCUS       KCLJ01003046             596 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 339362cal ultra-conserved element locus
            uce-381, sequence.
ACCESSION   KCLJ01003046
VERSION     KCLJ01003046.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 596)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 596)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..596
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="339362cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>596
                     /note="ultra-conserved element locus uce-381"
BASE COUNT          150 a          120 c          133 g          193 t
ORIGIN      
        1 gctgttggac accttggccg tgtcacagca atctttgttc attgatctat ttggagcgaa
       61 gcaggatgtt aatgatggct tatcctttgt ggtgtaacaa gtacctttta ctaatccaac
      121 actgtaaaaa tatccccctt ttcccttcca gcccctaaaa caatcccggg cagcgagggc
      181 agtgtgttgc ttgggctaag gctgggctgt tagctaaatt aagccattgt gactcaaaat
      241 cctcctttaa taaggttcat gctgtctaca acttcatcat tttctgctga atgataatta
      301 ctttattcaa tcatgttcaa ggttttagtg aaagctagca ttgattgatt aacttcaatt
      361 accatgctta catttgcata gataaaaact gcttttcaat ttgtgagtgg cacgctggtg
      421 gaaacccggc gctggtattt gcatttcaat gtggatagtg aagaataaag gtgggagaga
      481 ggtctgatca gtgctaagcc ctttctgctt cagtgctcga gcatttttcc ataaacactc
      541 ccgttatgat gttggtttgc tggcgggaag cggtgtttac aaggctctgt gacaat
//
LOCUS       KCLJ01003047             445 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 339467cal ultra-conserved element locus
            uce-7, sequence.
ACCESSION   KCLJ01003047
VERSION     KCLJ01003047.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 445)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 445)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..445
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="339467cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>445
                     /note="ultra-conserved element locus uce-7"
BASE COUNT          144 a           77 c           75 g          149 t
ORIGIN      
        1 cccaacccaa catggtagac ctaaggacgg aaacacaccc agtgcaaaca aagttaaaaa
       61 gctatttttt cagtatatat gtttcttagc aacaacttcc gtataacatg aaaaagtgaa
      121 aaactagaaa ctaatttttt tttttttctg tttaaattta aatggtatgt gtacttgctt
      181 cacattgtct ttctaagttg gcgttcacga ttcaagtatt tcaagagtga tatgttctct
      241 ttttggattc atattccaaa cgaaaaaact gaagttatat aagggaggca actatgtgct
      301 cagacagtct gtcaatgacc cacctctttc tccgttttct tttttccttt tataaatgta
      361 tttattgcaa gttgaaaaaa acgaaaaagg tcaagttagt gctgctgctg ttccaaaaaa
      421 ggtcacgagg tcagagttga aagtt
//
LOCUS       KCLJ01003048             672 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 339575cal ultra-conserved element locus
            uce-5167, sequence.
ACCESSION   KCLJ01003048
VERSION     KCLJ01003048.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 672)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 672)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..672
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="339575cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>672
                     /note="ultra-conserved element locus uce-5167"
BASE COUNT          170 a          176 c          143 g          183 t
ORIGIN      
        1 ttggactttc tagagggcac aaaatataac cttccgtggc cgcacactcc cattgttctg
       61 ttccctgcgt tctcctcggc tccttgcctg cagatgtcga gatccttgct ctgcatccat
      121 gtcaagttca agtacgggaa gtttagctcc agctccaagt cacttgtcag taaaaggttg
      181 ggcgatttat tgaccagtgc aggacgccta ctgtcagtgc tgaaggaaat atgagcgggg
      241 gctgtcactg ctgttctgga gctcattgat aatgacatac ctgcctctgt cacccattac
      301 ccatactaca aactacttag acctaactga aaaatcaata gcctacttgc accggttcct
      361 gtggctgcct cctttgattg tcagctcctg tctagggtca gcacttacat gaaaggggct
      421 gtgactgcct gatgctttca ggacaaccta acgatatgaa actagccaac agaacagtaa
      481 attctgtccc cctgccctcc tcatcaatta ggctttgact aggcttgcct gtagaaacct
      541 gaccttttaa gtttaggtga atatggaact agctgaacac gccattgccc tcagcactga
      601 gccaggaaat ccactgacag gttaaacaaa acagaaggtt gtaactgtca taatttgcat
      661 tgcactttca cg
//
LOCUS       KCLJ01003049             655 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 339685cal ultra-conserved element locus
            uce-5701, sequence.
ACCESSION   KCLJ01003049
VERSION     KCLJ01003049.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 655)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 655)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..655
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="339685cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>655
                     /note="ultra-conserved element locus uce-5701"
BASE COUNT          198 a          189 c          150 g          118 t
ORIGIN      
        1 agctcggctc atcccaaagg ggagcagcgt gctgctggga ggggaaaccc aaaagccaca
       61 gagactgtgc gtccagaggt gtttcctagt gttttcaatt ccttattccc ctttaaagga
      121 agagatggta ttggaaaagc cccttccgtg tcccctgtca tgccccgctc ccggccaccc
      181 tccacagcac ccacaccatc ctttcggaca tggatcaccc ttacctattg agctgaggag
      241 aagcttgtct cgacaacact gcccagatag ctgagattaa tcaaaaacaa agcagttatc
      301 aacacccgca aggagccgag ctccgcaaca catcagcacg tcaacaactc caaaaaggag
      361 ggaaagaaac caaactgaaa cgaaacgagg ctggagaaga aagggggaaa gaaacagaag
      421 agaaaggaag aagaaacaaa aacgataatc aacaaagcga atggatacac tgcataaaag
      481 cacggacaac agtgcgctct aacacggctc tgtcctggag ctggctctcc gctagacaca
      541 tggacctgtg actacatccc tgactgcatc gctccgtagc tgggttttcc agaggcacac
      601 agaagtcatt tcaggctcat ccagctgctc ttccccatcc tctccccctg agccc
//
LOCUS       KCLJ01003050             584 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 339796cal ultra-conserved element locus
            uce-6424, sequence.
ACCESSION   KCLJ01003050
VERSION     KCLJ01003050.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 584)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 584)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..584
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="339796cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>584
                     /note="ultra-conserved element locus uce-6424"
BASE COUNT          186 a          115 c           89 g          194 t
ORIGIN      
        1 aaaaaaaggt gtaatatgga gaacgacaca atgcttctta aaacacagtg atacccaggg
       61 actctcactc tctctttaat gatccactgc tctcattcag ctgtctttct tttttcaaat
      121 ctttacatat gtgacagctc tcaaaagtag accatagacc atctggcatt ttccgaggtg
      181 taacttgtgc aaattcagct ctactgggaa cacaatgcta tcttctgcct gcgttataaa
      241 agatacaata gaatgtagaa cttatgagtt gttttgaatt attcattttt tgcctgtata
      301 ttcaagaaat tttacaaact ctgcattttg tactacataa tcacatgcgt taaaggtaca
      361 aagaaacttt ttgacacctc ttttctacag aaagatggca ttttgtttga tatgtgaaca
      421 ttcagcgcct gttatatcat tctaaacagg ccgtgtgctg ctacaaaaga tcccatttta
      481 cactctatgt atgagcaaaa atgttattct tgatattcac taactaatgc aacacacatc
      541 aaaatttcaa atgtgtgttg gatgaacatt cagcatcatc aaat
//
LOCUS       KCLJ01003051             544 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 339907cal ultra-conserved element locus
            uce-532, sequence.
ACCESSION   KCLJ01003051
VERSION     KCLJ01003051.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 544)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 544)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..544
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="339907cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>544
                     /note="ultra-conserved element locus uce-532"
BASE COUNT          186 a           94 c           85 g          179 t
ORIGIN      
        1 tatttgttct ggttgtgtgg gagaggccag ttctagctgt agttacactc taacattact
       61 gtaaagcaat atcatgctgc catgcaatag ctctttaatg tcaaccataa ccttcataaa
      121 tgggtttgta acgagaaacc cttgtttgtc attctgtagg tatgattgat gctatgtgag
      181 tgaagtgtag ccacagtgac catctcaata acatgaacag ctgccaaata ttcatttagc
      241 agaatgagtt taaaaaactt tgagcagatt gctttcacaa ggctgctttc aacaaaagga
      301 aacataatta acgagctaat atcagcatgt gtctggctaa gctaatgaat atcaaattac
      361 acagaatcct gtataaatca tcattatcct gaattttaat tgaacttgca attaaacatg
      421 acaaatttta tatacactaa acctttaatt tatactttca aataagaaat aatttatcat
      481 ttttagtatt tcatagttaa tttcccaata tgtacacttc taattaacaa ggacagacag
      541 gcct
//
LOCUS       KCLJ01003052             537 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 340014cal ultra-conserved element locus
            uce-157, sequence.
ACCESSION   KCLJ01003052
VERSION     KCLJ01003052.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 537)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 537)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..537
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="340014cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>537
                     /note="ultra-conserved element locus uce-157"
BASE COUNT          128 a          180 c          125 g          104 t
ORIGIN      
        1 ctattcaaac acaaaacccc agcagataac agttatgtta cgttctcacc cgtaaatgcg
       61 cctctgccta gagcaggaag aaaagccacc aggaatttcc aaacacattt tctgggcaaa
      121 ccccgcgcac ttcccgggat tcattctaga ggagcctcat gggcggcggg atggggccgc
      181 tcccgatgcc acccggggct ggaacaaaca gccggacccg aactgctcaa gatggcgatg
      241 gcagcagcag ccagtaataa ggaaggttat tcaatcccat tagcctttta gcccaaagaa
      301 cccctcctcc tcccactcat tcaggctctc acttaccctt cctctcggcc tcttcactga
      361 agacattttg gcgtcagaca aagacttgcc ctccgctttt ccagcacccc cggcagtgct
      421 caggagaaaa gcatggggag aagattgcta aatggcctat ttagcgagcg gcagccgggc
      481 cgcgctcagc cctccccgag cgctcgctcg cttcagcagc atccccgcgc cctgccc
//
LOCUS       KCLJ01003053             561 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 340122cal ultra-conserved element locus
            uce-5692, sequence.
ACCESSION   KCLJ01003053
VERSION     KCLJ01003053.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 561)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 561)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..561
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="340122cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>561
                     /note="ultra-conserved element locus uce-5692"
BASE COUNT          145 a          118 c          111 g          187 t
ORIGIN      
        1 tttgcagttc taggctcatc aacacttccc atgattgaac aagactggtc ttgttgatct
       61 cattttcttt tttccttctc cttgcaagca gccctgttgt taagctgctc tgtgatcaaa
      121 taaaatgaac aaagtattgc cttaattcct ttcagtggct gcatcaactg ctaattccac
      181 agctggtgcg gccatgaatt ctttgacttc tctgggtact ctccaaggac tggctggagc
      241 cactgttgga ctgaataata ttaatgcact agcaggtacc gtaaacagtg agtatttatt
      301 gctgtggtgg acagccttcc ccaataatca tgccaccaat tgcaaagtga taatatgatt
      361 ttaatctcta caccaaataa ttcagttcca tactactaca ttggagtctt ttagtttcac
      421 acagtttgtt ctgcaaagtg aatttccttg tgtccttgca taaagactcc tcttcttgca
      481 gtaaatgtga aaggtaaaag aattgtcact ggggatttgg ttgtcaaggt ggtaggagag
      541 gctccttttt tgacaacagg t
//
LOCUS       KCLJ01003054             618 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 340230cal ultra-conserved element locus
            uce-5397, sequence.
ACCESSION   KCLJ01003054
VERSION     KCLJ01003054.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 618)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 618)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..618
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="340230cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>618
                     /note="ultra-conserved element locus uce-5397"
BASE COUNT          173 a          147 c          138 g          160 t
ORIGIN      
        1 acaaacacac ctgctatttc caaccttctt acatagaagt tccatcacag aagaaccctg
       61 gcacaatctt tcccaaccac ctaaatgttg gcctgcacct aaactgggct ggatccagcc
      121 ctttgtgctg tggtgttaac ataagagctg ctcccaaacc agaagaacct ggcatggcag
      181 gggttaatgg gaggggaggg tgagactaaa gaaaatagcc cgacacccag cttgtttgat
      241 ggagatgcga cctggcagca ttgaaaagct tcaagattaa tggagaaaag gcggaatctg
      301 acagcttttc cgctggtttc actcctcctg ggtgggccga ttgctcttga atgtcacttg
      361 ctacttaatc ttgtgtatct gaaacagact gatgtgtttg gggagccctg cttgctctgt
      421 atagacatca attggcaagg cagataaaag gaaactgcat tgaattactc tcttatgcct
      481 tttatagagc actttctgac tacaaaataa ttagtagcct catccaacaa aacccatcgt
      541 ggctagggtg ctcgttaaac ggaggagaaa gtattgctta ctctcttcca gctccttcct
      601 agagctacca tcaaagca
//
LOCUS       KCLJ01003055             475 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 340341cal ultra-conserved element locus
            uce-2899, sequence.
ACCESSION   KCLJ01003055
VERSION     KCLJ01003055.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 475)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 475)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..475
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="340341cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>475
                     /note="ultra-conserved element locus uce-2899"
BASE COUNT          147 a           83 c           96 g          149 t
ORIGIN      
        1 aaattataga ggaatcagag tgaggtatta gcacactgag taaaatatat ggctgcaacg
       61 cctcccccat ccacaatcaa ttggattctt ttagtttaat atttacttgc taagatgaga
      121 tgctagtctg catggtgata aacagtctgc tactggcatc tgaaggtgac ctgtcagttc
      181 atatggacaa atctcctgct tactgaaatg tacaaaataa atcattaaag caggcaggtg
      241 ctcattccca gatttaaatc accatagatt tatgatttga attaatgctt catttggtca
      301 tagaaataga tgctgagaca aatgatatgc agtggttggg gcttccatac tgtagccatc
      361 ctaatattga ttactgagat gtctttgcaa tctcttgttt atatcaagta ctgtcttgtg
      421 acagcttggc tgatatgagc tacattgcag ataagaagga aaaatgtccc aggtt
//
LOCUS       KCLJ01003056             583 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 340450cal ultra-conserved element locus
            uce-4325, sequence.
ACCESSION   KCLJ01003056
VERSION     KCLJ01003056.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 583)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 583)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..583
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="340450cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>583
                     /note="ultra-conserved element locus uce-4325"
BASE COUNT          173 a          116 c          103 g          191 t
ORIGIN      
        1 ttttatattt gtttgcatga ctccaggaca gtatttatga agttttgaac atttactcct
       61 atctgaaatt ttctttcaga agaggggagg aaaaaatact tagcttggag actctttgaa
      121 catgcctttt cccccatttc tttcaagttt tatgctatga aatattttct gataacaggc
      181 ctcatttctg tctcagctcc acaccagtaa ggttttaata ctcagcgtgt gatgagagat
      241 gaaaccaagt gtgaacaact tttgggtccc atgagtaggc tgactgttga agctgtcagg
      301 ttcaattgca tcattccaca ttattcaatg ccccaaactg ctccctaatt gttagaggct
      361 taacatattc aaaaccattg tttaggctaa tgctgaaatg cctacagttg agtttccaca
      421 aagaaagggg agtagttaaa ccattactga actcttcctt tcgtgatagg gcaacaagga
      481 tggccagaac aaccaattcc aagacagctt cttaatcagt ttatatccaa tcaacactgc
      541 tttaaaaatg tcattgctat attgtagcta tcatataatg ctt
//
LOCUS       KCLJ01003057             745 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 340561cal ultra-conserved element locus
            uce-1925, sequence.
ACCESSION   KCLJ01003057
VERSION     KCLJ01003057.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 745)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 745)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..745
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="340561cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>745
                     /note="ultra-conserved element locus uce-1925"
BASE COUNT          191 a          175 c          158 g          221 t
ORIGIN      
        1 atgctcacag caaagcttgt tctcacagcc tttatgtgga tctctgtttt tttggatctg
       61 ctgtctggat ggggttctta gagaccaatt tcaaatgatc caaacagtaa tgaagaggct
      121 gctgtgcgca caatagctcc tagttgctcg tatgtatgga ttcctccagc ccatgaatac
      181 agatctataa gaagcactat ttaatggtta gcctgggttt ttgtctgaaa tttaccaaag
      241 ttttatccca gctccctgga gtcctcccca agtctatcta aaatgcagtt agagcagagg
      301 ctgtcttttg cttcacagag cgtctgcctt atgctttcat cagagtagtc taactcacac
      361 agatgcacta tttaacaatg ccatcccctg ctttcatcag aagggggaag gttgcagagc
      421 tgagccctga agaataaggg gggcaggtcc cctgtgatcg gcgaaagctg aacatcggtg
      481 ccagtttcca tctgtcatga tagcctatct ccgaaccttc aatctgtcaa aagcttgctg
      541 cctagctgaa ggctccagga gatttggtgc actaaacaca tttgacaaca gcattatcac
      601 tgcaaggagc ccagcaaaat gccatcaatg tgttaattgt agccggctat gtaaaatgtc
      661 acttcccata tcattttaca gcggctttgc ctattttgca gctcctaatt ttccaccctt
      721 tataaatacg tggattgttc atgtg
//
LOCUS       KCLJ01003058             565 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 340670cal ultra-conserved element locus
            uce-6723, sequence.
ACCESSION   KCLJ01003058
VERSION     KCLJ01003058.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 565)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 565)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..565
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="340670cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>565
                     /note="ultra-conserved element locus uce-6723"
BASE COUNT          173 a          129 c          104 g          159 t
ORIGIN      
        1 tggccccgga cccgccctgc ccgctgcgcc ttcgcttttc caagggctcg atttcccggc
       61 agccggcaac aggaataaat tacaaagccg cacttaatgt tagtgactct ttaaatggaa
      121 tttttcattc aaactttgtc attaaaatag aaaggccttt tggttgtgac catacaggca
      181 taataaattg tatatgtttg tgatactgaa tgaatcttgc ccatatgctg cactgcaagg
      241 ctacatgaat gaagcattta ccaaatcagg cccaccacat taaacagaaa aacaatcttt
      301 attcatggta acttatcagt ttcaattaat caacctcaac aatagaaatt ctgatgtgtt
      361 caagcaactt gaaagcaata ggtcatctcc agggcagcca tgttgtgtct ttgtgcctat
      421 ggcttcagac aaagcaacat ctccaataaa tgtacatccc cacacacaga tgtgtgacta
      481 tatctgtata aacatccagg cgcactgaag gccctggtgt acacgtacgt agaagtgttc
      541 atttttgtca tacaaaaagt aattg
//
LOCUS       KCLJ01003059             536 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 340781cal ultra-conserved element locus
            uce-99, sequence.
ACCESSION   KCLJ01003059
VERSION     KCLJ01003059.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 536)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 536)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..536
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="340781cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>536
                     /note="ultra-conserved element locus uce-99"
BASE COUNT          195 a          107 c           62 g          172 t
ORIGIN      
        1 gtaattacca gaatttcatt ttcattaact aataaaccaa aacaatttga gtatctgaat
       61 gtcatttttc aaaggaaaat aaactgtaaa catttgaata acatcacagc agggataata
      121 tacctaagga aacctattga aatatgctgg agaattcctc ctctttcatc acattaaaac
      181 tgcaattgac tgtaaacctc ctaccactct ccgctgagac tttaattgta aagattcctg
      241 ttacacatca tattagaatt tagttaaaat tgtagaacac attatttcca atcagacagc
      301 caaccatcac tcacaaagat ttttaaaaag gtgattaata attcatctca gataaggaaa
      361 agatctatat ttataccatc ttctcagcca ccataaacta cctgacaatt gttcagtaat
      421 gatgcccagt aaattcttta aaatggtaat ttgtcattct gtcacttcat ttgtgaccta
      481 aaattcctca cttgaggcat catcaaataa attaatcact ttccaggatc catttc
//
LOCUS       KCLJ01003060             350 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 340888cal ultra-conserved element locus
            uce-6313, sequence.
ACCESSION   KCLJ01003060
VERSION     KCLJ01003060.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 350)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 350)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..350
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="340888cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>350
                     /note="ultra-conserved element locus uce-6313"
BASE COUNT          148 a           46 c           70 g           86 t
ORIGIN      
        1 tcccaaggct ttctaattga tgagtgatcc tgcagcatgg atagaaatgt acagaacagg
       61 gaagaaaaag aagccactga cacagcagaa ggagcaaatt cactcatcaa gatttgtgtt
      121 taaattattt gaaaatatac tgcatctgtt taatgtttaa agcaaaagaa agtggaaaag
      181 taactgagca tgagatagct ttcaataaat aatcatggag taaataggta aatacgcatg
      241 ggagcactgc aaatgcacaa gtagttttgt gccaataaaa tgcaaaggat aaaaataaaa
      301 tacaatacag ctgcaaaagt atttatataa atcatgaaaa tgtaagggaa
//
LOCUS       KCLJ01003061             658 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 340993cal ultra-conserved element locus
            uce-2911, sequence.
ACCESSION   KCLJ01003061
VERSION     KCLJ01003061.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 658)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 658)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..658
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="340993cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>658
                     /note="ultra-conserved element locus uce-2911"
BASE COUNT          136 a          173 c          174 g          175 t
ORIGIN      
        1 tcaacaaagt ccctctgcca ttctacttgc ttaaggatgt tcctgaaatg ttttctgacc
       61 caaactgtcc cttagctgag aggccccttt ctccagcagc tagccctgaa agaattaaac
      121 agggcatcct gtagagccgt gaggatcctc cagatggatg gctccgtgtt gctgaagcct
      181 ttcatggcac tttctagagg actctagtta aaagattacc taggcaagtt gattgagtgt
      241 aaaacgtgct gtacctgcaa tgttctcctg cttggggcaa attccttttg taggcgtgag
      301 aagacggtct tcttcatcgg gtgtgacttg gatcccgatt tccactggct ctgacacttt
      361 cctgagctcg gcgcgtgagg aggggggagg gctgctctta tccatgctct tttcatagca
      421 gacaccacca gtgccattgc actgttttct cttgtgctct ataaaaacca agatgtctcc
      481 cagcgggaag ttcatctgac actgtccgca ggtcagcagg tcggggtctg tcccgcctgc
      541 ggcgatgctg atgccgcccg ggtctgctat tgccaggctc tcgtcctcgt cggccagcgc
      601 cggttccaca tggtcagcct ctgctttgca tggacaagga gaaagagggg gaaaagag
//
LOCUS       KCLJ01003062             689 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 341099cal ultra-conserved element locus
            uce-5554, sequence.
ACCESSION   KCLJ01003062
VERSION     KCLJ01003062.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 689)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 689)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..689
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="341099cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>689
                     /note="ultra-conserved element locus uce-5554"
BASE COUNT          235 a          166 c          110 g          178 t
ORIGIN      
        1 agtaatgaat cacagctgtg gacagctaat ctgtatgctt atcacagcaa atcctgatgc
       61 tctgtatttt tttaacactt tgcatcccaa aacaactcat aaaatataaa acttaccgct
      121 gccatctaac aagcacgctt ctgcaaattt actgaaaact ttatgaaagt gtataattca
      181 ctaattccta tttataagca aagcatagga aagccccttg ctaaaaaggt agtaaaacaa
      241 acaaaaaagg cctcattaaa tatacgaaaa cgttttgctt ggaaggactc aaaagggtta
      301 ttttccctat ggcctctcaa taaaataacc ctatctgccc ccttcaaggt tgccctcccc
      361 ctattctgag tcaagcgacc tccgacccct tggagggcaa agacatgact gatccattct
      421 tggtaaactg ctaaactcat tcccttcccc caaacaggca tgactactac gacatgtcaa
      481 caaatcctta cggagggaat gaaacaaagc aaagccagcg gctcattaaa accgcagcgg
      541 agagcccgcg gtaccaaatg ccaatcggta aatattcaca agattattaa atgctgcaca
      601 agttctctaa cgggatctct ttcacacgaa cttgtatgta atgcaatttc atgaattatg
      661 caaataaagg tttcaactat tcacgacaa
//
LOCUS       KCLJ01003063             600 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 341208cal ultra-conserved element locus
            uce-8045, sequence.
ACCESSION   KCLJ01003063
VERSION     KCLJ01003063.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 600)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 600)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..600
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="341208cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>600
                     /note="ultra-conserved element locus uce-8045"
BASE COUNT          205 a          144 c          109 g          142 t
ORIGIN      
        1 aacctgtatt atcagctaga ctgctagtca cactcagggc agcaagagtt gatgcccccc
       61 aacagaattc tgcccaaagc aaaacagcaa agcagcagaa ttagaagagg aaactacttt
      121 tttctctgtt gctgtcagct catcagctct aaaatacttt gaccgtttga agaatttaaa
      181 tcaaaagatc tggaaagcaa acttacatga gtatgttcat aaatacagtt gtcaataaca
      241 tctgcaagag ttgctccttc atccaacaga ccaatggagt aatttgcatc ctcgagaaat
      301 cctttcatct cagccgtatt ccacaaagcc gacagtcata aaccaagaaa cacaagggat
      361 gggcttccaa gccttaaatc cgggtcctta aattatgcaa caaactgtag agagaaaaag
      421 aggcacaaca gcttcctaca cctgatgtcc tacaaacagt aacacacatc tgcgcacccg
      481 tcagagatag gatagaacaa ttctactgaa gccaagagaa gctgggtact tcaaatctga
      541 cactaacttc ccaaggctgt tcttgagaat tccagtgcac actgatctgc actgagttta
//
LOCUS       KCLJ01003064             627 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 341319cal ultra-conserved element locus
            uce-268, sequence.
ACCESSION   KCLJ01003064
VERSION     KCLJ01003064.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 627)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 627)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..627
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="341319cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>627
                     /note="ultra-conserved element locus uce-268"
BASE COUNT          185 a          135 c          148 g          159 t
ORIGIN      
        1 acggtatgac aactgcgagg gtgtgctgcc tcttcccaca ttcctggcga gacagatggt
       61 gttacatggg acacagggag gtttgttcaa acagcagcaa ccttcaaaga tcaagcagag
      121 cccagcccgc cgcgcgccat tgagggaccc gcgctcatat gttgctgagt tgcataaaca
      181 aacagcaaca gctgttttgt ctccccccat cgccctccga ggactactat aaactttagt
      241 tgtgccactg ttaatatgat acaatcattt taatttacta attgtaaatg ccatgagcaa
      301 atgaggggac ttttcaacac caaagctacc attcataatg cgccagtacc agtgcgctct
      361 cgcatgtgaa atttcaggca gttacgttgg ataaatatcc aggcgggccc tcccctggcg
      421 tttttaatga tacgaggcgg aagaacctta cagtggatca ggttaggata tacatgggaa
      481 aatgtgtttg tctactggaa aagccatggg aaggaaagaa aggagaaagc gctctggagt
      541 catttatatt gatttaagat caagcaaaag atacggttct cttaaaatgc taattgcaaa
      601 aatcacatga ttaggaagat gtgtgtt
//
LOCUS       KCLJ01003065             568 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 341430cal ultra-conserved element locus
            uce-110, sequence.
ACCESSION   KCLJ01003065
VERSION     KCLJ01003065.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 568)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 568)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..568
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="341430cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>568
                     /note="ultra-conserved element locus uce-110"
BASE COUNT          244 a           99 c           84 g          141 t
ORIGIN      
        1 acagaatgat caagagctgc acacagagaa atgctttcaa aacacaagca ttttttaaat
       61 gttaagtgag atgtaaatat gcatggtagc aacaaagtgc ccaaaagcat actgaaaaca
      121 tattccatac acagttagca atagaagtct gtacaaaagt aataaagtta cacaatataa
      181 aaaatactcc ataactataa tttaaaagag ggaagggaat tgatttctca gttcatataa
      241 tttattgcag ttagcacaca gtttaaaaat tcaccaacac accaatagta caaaactaaa
      301 cagcattata agttattccc tcctcaggaa aataaaacat actatgattg tcaaagctag
      361 atgtcagtct aagttttaga acaaaagaag aatgtgaaac taaggaaagg aaaaaagcaa
      421 tcactcacga ggaccacaaa aaaatccaag agaaagtcca ttttcctcag acactgattg
      481 tcttttctaa cttaagaaaa gaatgtagtt ttaaacctag aaactattca agtaactaaa
      541 gataacgctc caaggccatt ttcacagc
//
LOCUS       KCLJ01003066             495 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 341540cal ultra-conserved element locus
            uce-690, sequence.
ACCESSION   KCLJ01003066
VERSION     KCLJ01003066.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 495)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 495)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..495
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="341540cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>495
                     /note="ultra-conserved element locus uce-690"
BASE COUNT          157 a           87 c          106 g          145 t
ORIGIN      
        1 gtctcttcag gaaaaatacc actgttgagc tgtttgggat tctttctcgc tggggcttta
       61 aaattctaaa gaacagataa gagcaaacag caaataactg gatttagaat aaactcagaa
      121 attatcgcta aggcccttcc tctgccacaa tttgtcaaat ctgctgatag gaaacaaatt
      181 ctattcataa agattttatt tttttggggc cctcttgtga tttggtagca attcaattat
      241 agttttgtga gatagtgagc ccggagaggg aatccagact gacaagaaat atgacaggac
      301 agttacagag tgtttatgca attaaacttt cactgacaat acctgcagaa tgatgaatgc
      361 gtgggcggag gtatgtgtgc acaagcaatg ccccacaagt attgcacatt tttcattatt
      421 atacaactgt tcagatcttt caagaatagc ctgaagtgag gtggaaaaga gagtgctgtt
      481 ccacagcatg ttaac
//
LOCUS       KCLJ01003067             457 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 341652cal ultra-conserved element locus
            uce-6987, sequence.
ACCESSION   KCLJ01003067
VERSION     KCLJ01003067.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 457)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 457)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..457
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="341652cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>457
                     /note="ultra-conserved element locus uce-6987"
BASE COUNT          116 a          111 c          105 g          125 t
ORIGIN      
        1 agctttacca atttagcttg ctttctgctc ttattggtgc ttaagaggtt aagactttat
       61 ttgtgaaaac ggggaatcgc gttgtctgca gcttcctaag tcttgcttaa gatccttttc
      121 aattaccatc catttctcct ttaaaaaggg acacggagga gtggaagcgg gtcagggcag
      181 cgtgtgacaa tgacagtgtg atgggcccgg gccccccgtg gcgtttccat ctgctatcat
      241 taaggtgact actcagacat gaaaaaatcc ctctcgctgc gctgacaggc acacatcaac
      301 aactatgaca aggcattagg acagaaagtt gtcatatccc gcaaaaatcc ctgcctcttt
      361 tattggaatt tggggttatc aaacctcgca ttagtttgac aacgaggatg cggctgacag
      421 ccacaggcac acttagctcc tacctggagt ctctacc
//
LOCUS       KCLJ01003068             482 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 341759cal ultra-conserved element locus
            uce-7533, sequence.
ACCESSION   KCLJ01003068
VERSION     KCLJ01003068.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 482)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 482)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..482
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="341759cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>482
                     /note="ultra-conserved element locus uce-7533"
BASE COUNT          119 a           80 c          111 g          172 t
ORIGIN      
        1 taatggttga atgaattttt aggaatttta aacttggttt gatcattaat ttctagtttt
       61 cttgagtgtg gggtagggga actcgaatgc aacgtgactt tcagtgatct ctgagctgtg
      121 ttttagggac tgtgtgttgg tggctcacgg ctcactacag tacaggatat gatctcaatg
      181 tagtgcatat aaaactgcag attgattttc cttgagtgct ttatactgtt taattacatc
      241 tccatgtagg gctgaaaaaa attacctatg tttatatata actgtgttgc ttttgatgtt
      301 gtgttctggt cggtgcgcgc tgaggtggtc caggtacagc acgatagccg cgcgagttca
      361 gtactgcttc cgttcattgt ttacgctgga attttttctc cccatggaat gtaagtaaaa
      421 cgtagtgttt gtcaccaata aatggtaata ctaaatggtt agtttattcc tacaccacca
      481 ca
//
LOCUS       KCLJ01003069             757 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 341869cal ultra-conserved element locus
            uce-1832, sequence.
ACCESSION   KCLJ01003069
VERSION     KCLJ01003069.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 757)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 757)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..757
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="341869cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>757
                     /note="ultra-conserved element locus uce-1832"
BASE COUNT          237 a          161 c          132 g          227 t
ORIGIN      
        1 atttcacatt gaaaccaata aaggtatact gagaggaaag aaagcagcca tgtcaaacca
       61 tacatgcaag ctcacaaagc tgacatgcca tcaccatgtg taaatgggaa atctatctgc
      121 attttagcag ccctctagct aaaccccatt ccctctgaaa aaagtgtgtt cagcagtatt
      181 agagtttgtt tgtgcttatt aaataaaaag aaaggatcac cttcaaccat attaatgatg
      241 gactggtgga tgaaggatgt ctgcgaaaat tcacaacatc tgtttgctcc actctcttct
      301 cagtgtgctg cacctattcc tcatgcttaa tgatgctcat ccactctgca agttttacga
      361 acaaatgtgt gtttagccac attcatcatt ctgaatgagc gttcttgatg aagcatccac
      421 tggcctgttt cgctctttct gctacacttt aacaaatgac aactgctcta cgtatttttc
      481 atttgttaaa aataaaaagc taagtgaaga ataggcccag caaatttttc ttttactctt
      541 ctgttaactt tactggaaaa cggaatacag cgtgcattta aactgcatgc aagttcacat
      601 gcacaaatct aaatggtgca tacagatatt taaaagtact acacggcaga atagcataac
      661 agacaaacat tctatccaac aggagcagtt ccatcttcct atgaaggtga tgtatttctc
      721 actctgatca gcttggggac tgattctgtg atgttca
//
LOCUS       KCLJ01003070             518 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 341979cal ultra-conserved element locus
            uce-5334, sequence.
ACCESSION   KCLJ01003070
VERSION     KCLJ01003070.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 518)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 518)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..518
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="341979cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>518
                     /note="ultra-conserved element locus uce-5334"
BASE COUNT          174 a           97 c           92 g          155 t
ORIGIN      
        1 agacagaaga gagaggtaac ctaagctgta tttttctgtt attttgtcaa taaatgtagc
       61 tcttaaaaat ttcaaccaca tctttctaag gtaacattta cctcctcaca tctttagcat
      121 ctatcagaca tgacatggga catattcatt gaccctaaaa attttcatca gtctcatgca
      181 ctggaagggg gcagccccag ccagacaaga ggctcatttc aattttaacg gctgtaatta
      241 aaggttaatt cactgagtca ggattaacga ggaaagtaca aatgataggc aagcagctgc
      301 ctttataata caggattaga acaatgcaat tacaatagga attagaaaaa accaacttcc
      361 tgaaaaggtt ctgtaataaa tgaactttct ctgttcttaa ttgtggttgt gcagcatatt
      421 gttgttgtaa taacagttga tcaacagtgt gtctagtatg ccaaccacag tgacagcaac
      481 tgttattaat actatgctct actgaaaacc ttcagact
//
LOCUS       KCLJ01003071             490 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 342091cal ultra-conserved element locus
            uce-6390, sequence.
ACCESSION   KCLJ01003071
VERSION     KCLJ01003071.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 490)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 490)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..490
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="342091cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>490
                     /note="ultra-conserved element locus uce-6390"
BASE COUNT          167 a           80 c          100 g          143 t
ORIGIN      
        1 tttacgttac gagaagaaat atgcaaaact gtcattagca aataggaata tcatcgtcaa
       61 agacttaaca tttactagaa ggcaattgct tgaaaacctg gttttaattg tgcatacata
      121 tttttattca ttaaaatgag caaccaataa aatcccgcac tatggtgtcc cagcctcata
      181 acacattaat aaagtttctt aaaggttttg gcagggggcc agcacagtcc attaactcct
      241 tgcaagttgt aaaagaagta aagtcatttt gggctgcctt gtggttatga atgaaacagc
      301 aggaagtctg tatggaaacg tcactttgga tatggcattg gtaatggatg ctttgctgtt
      361 caatcaaagc agcatgggga taagttaatg cactgaatca caatctaaat cctgaggaac
      421 tgcaaaacta atttagttaa aagtggaagg aaaatccaag ttttgaagcc ctgtgtattt
      481 tactagaagg
//
LOCUS       KCLJ01003072             570 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 342198cal ultra-conserved element locus
            uce-2096, sequence.
ACCESSION   KCLJ01003072
VERSION     KCLJ01003072.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 570)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 570)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..570
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="342198cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>570
                     /note="ultra-conserved element locus uce-2096"
BASE COUNT          160 a          104 c          105 g          201 t
ORIGIN      
        1 ttctttctta tataggtgct tgaattactc ataattattt ttgcctcgtt ttgctaactg
       61 ctgaaaaagg gaaaagcacc tagtgcagac ccctacattt gagattttta cctttttgac
      121 agctgaggag acgttgaatg gaacatcata ttccttattg taaaagtaga atcataatta
      181 taaagctagc tgcattcatt aggcagagct gctttaaacg caagagtctc ttcatctcat
      241 cttaatcatt atattacaaa gtaggcattt ctgtctgcct agtggcatgt cttgcaaaag
      301 aactagagag tttttgaagg caaaaagaag aagggggcca attatcggct tctgcttccc
      361 tgccacctgc cagcgctttc cttttaatta atgatctgat ggcactggtc aatataataa
      421 gaaatgcttg tacagttggg gtcagaaaat tcaggctttg atcttcttca actttgtgaa
      481 acatttattt gttttctcta aattatttca gttttatttt aatctcttct atcctgctga
      541 gggctgcgtg aatgaaaacc tatactgttt
//
LOCUS       KCLJ01003073             679 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 342302cal ultra-conserved element locus
            uce-7010, sequence.
ACCESSION   KCLJ01003073
VERSION     KCLJ01003073.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 679)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 679)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..679
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="342302cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>679
                     /note="ultra-conserved element locus uce-7010"
BASE COUNT          223 a          122 c          127 g          207 t
ORIGIN      
        1 tgctagtaca atttagcacg taacacattt caaagagagg agaaacagaa acacaattgt
       61 gattaatcat gctcattatc aactcagact tatgacctgt gtaaattttg gtggatggga
      121 ggaggggtgc atatgtgtgg aatgagagat gaaaaataca ctcctttctc tgccaataaa
      181 atgacccttc caccctctca cttttcagcc aaaagttagg tggatgtcta aggctggcta
      241 aagccttatt attaagttaa ctctaggtgg tttccattag ccttacagta catgccactg
      301 agcagacata cagtaactga attgtttcaa cttatccaaa taacattgaa atagacttaa
      361 ttgttgaact gcaggaaaga ccacgtgtct ccagagacta ttagtgtcat ttaaaaggct
      421 aaatgtatca taaaacctgt ctttaacaga ataaaattgt acagaccaac acaattttag
      481 ctaatgtttt ccacatttca tgcaaagtca ttggctgtaa aggaaagttc ataacatttc
      541 taggagtggt ttcagtgcag cacttcccag ctagttttag cctagttttt tactattgag
      601 cagtttactt tgaaaatagg caaaacctac aggatttatt tacagaacgt atttctattt
      661 atcgtgagta aagagaggc
//
LOCUS       KCLJ01003074             548 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 342411cal ultra-conserved element locus
            uce-2400, sequence.
ACCESSION   KCLJ01003074
VERSION     KCLJ01003074.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 548)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 548)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..548
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="342411cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>548
                     /note="ultra-conserved element locus uce-2400"
BASE COUNT          134 a          126 c           97 g          191 t
ORIGIN      
        1 cctgcatcat taattgattt cttccataca ttgtgctatg atacaatttt tcaaggctgt
       61 gcataattgt gttccctgtg ccactgctct atgttctgtc cttgtcatat tgtcattgaa
      121 ggctgattcc accctctgta attggagatg ttctactttt ggacaaaggt gtgggggcag
      181 ctcaggggaa cagcgctgac atttacttca tcaatttatt tttattgttc ctacatttat
      241 tgcagctata acagcccttt aatagttata tctcctccct gtagggtatt ctggtatttg
      301 aaattttttt aactcatttg ttctcataga taacagtaaa gtgcatttca cgctaacctt
      361 taggtttcaa tcttctctct ttctttggct cccaagcagt tgcagcttta aacttttact
      421 gcattgccag tctaaaggcc accaccaccg agtccattcc agcactggag taaccacaaa
      481 ttagtggtcc tgaaaatttc agggaggcga gtcctaaacc ctgagcgccg ctattaccat
      541 aactcaaa
//
LOCUS       KCLJ01003075             566 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 342515cal ultra-conserved element locus
            uce-5555, sequence.
ACCESSION   KCLJ01003075
VERSION     KCLJ01003075.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 566)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 566)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..566
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="342515cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>566
                     /note="ultra-conserved element locus uce-5555"
BASE COUNT          206 a           88 c          105 g          167 t
ORIGIN      
        1 cttcagattg gtaataaact attccacaaa taaacatttg ctcagtttcc ttcttaggaa
       61 aattaccttt agtgcttgca tagattttcc aatatatagg tcaatctgtc ctaacctttt
      121 ctgaaggaaa atgagaaatg aacaatgtaa tatgtaatgg cactgtttgc aaacactgaa
      181 gagcagcaga ctcaagaact gcaatataaa gctatcaatt aattttgttg taactgtatg
      241 cacctgtgaa caactgctta attaaagagg caaacagaaa tctctcacaa taatgtttca
      301 aattacttac atttatgtga ctcaattagt tggagtggat aaatacaatt ggaaagctgc
      361 catgtggact tctggaaata aagaaaagat agaactgaag agatacatgg gaggaatcag
      421 gcagataaat acagataatt cttcatagga ctatacaaac agagaagatg attctgtgca
      481 aatgaaatac ctcatttact gtcacagagt ctgtgttcac agatgggaat attaaggaga
      541 ttgtttgctt tggtcagaat atgcac
//
LOCUS       KCLJ01003076             738 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 342624cal ultra-conserved element locus
            uce-1893, sequence.
ACCESSION   KCLJ01003076
VERSION     KCLJ01003076.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 738)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 738)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..738
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="342624cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>738
                     /note="ultra-conserved element locus uce-1893"
BASE COUNT          220 a          151 c          159 g          208 t
ORIGIN      
        1 aagaaaacag cttctgagaa ggcagctcca ggcagctctc cgtgcccagc caagttcatt
       61 agcaggctgc actctcagca gtgatgcaat atgccattac cctctgcttt aactgattta
      121 ttttaagcgc aggaagaaaa gtcaagattg gacacagaag gaaacaattg tttttggcct
      181 gttgtggtgg agtttacgtg tagaggtgcc tcgtagccta gttgctgaag ggaaaacaag
      241 tacaaatatc tatgccttgg ctgttagggt ctgattataa gcactgtgct agagaattca
      301 tggattattc atgtgtaatt acagatagct attgtgctct tttaaatcat ccctatagcc
      361 cattatggcc cataacaact gaaatagcaa ttgtcatagt aaggtttggg ctctgtcata
      421 gagtgtaggc tctaatcaat aatgatgaat tgcaaaattt agcatcaagc cagagaaagt
      481 ctagttgcct cttgccataa atctgtgcaa atatcaagtt gcacagctgc tgtatctgga
      541 aatctaaaag gcaacactct cccgccaacg catgcacctc tataaaagtt gaaaaaggag
      601 aaatgtgcaa tatgtccatt ctaataatcc acatgctgtt aagtcacttt tctatttatt
      661 caaagcaggg tgaaccctag gttgttttca aggtcaattc caggtgaaag gggtcatctg
      721 gaggccacct cgactccc
//
LOCUS       KCLJ01003077             745 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 342735cal ultra-conserved element locus
            uce-1526, sequence.
ACCESSION   KCLJ01003077
VERSION     KCLJ01003077.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 745)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 745)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..745
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="342735cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>745
                     /note="ultra-conserved element locus uce-1526"
BASE COUNT          241 a          117 c          122 g          265 t
ORIGIN      
        1 ggacaatatt tgtgtggtca ctccatgagc atttgtgctt ccaaaccaaa ctgttcatgc
       61 aacagaccag aatttaaatt tttctaatcc tctgctagtt attctaatgc ccttgttatg
      121 aattctgtaa tattttttgc aaactcatat aagcaggtaa ttgatgcaac tgaaattctt
      181 gtcacatatt tattgcacta tcagcttttt taagtgacaa gaagcaaaat aatcattaat
      241 ttttataggg caaggatctg gctttttgtt tgacacaaag ctgtataaaa aactgcttct
      301 gattttatgc acattgtttt tagttaatga ttttcagctg tttgttgttc ctctgatagc
      361 atgaaaatgt accatatgct cagccaaaag acaaatgatt agcaaatgaa attctggaca
      421 gctgtctgac tgaaagcgtt tggttgatag cattctgcta tcataattag cttaagcttt
      481 gggttaatta actttctacc tggatatgca taataatagc aaactgcaaa aagcaggaag
      541 ctttcagtac atcaacaaca ttgctgtctt ttttatttgg tatttcaaga gcatattaga
      601 atttcaagag tgattaatcc tgggaatatt gtcatctact gtagatttta tttgcaagcc
      661 agataatact gaaacaattg gaatctatta tacagcagaa atagcatttt aaaattgtaa
      721 ttaaagtttc taaaagcaat tgcta
//
LOCUS       KCLJ01003078             623 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 342846cal ultra-conserved element locus
            uce-6346, sequence.
ACCESSION   KCLJ01003078
VERSION     KCLJ01003078.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 623)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 623)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..623
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="342846cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>623
                     /note="ultra-conserved element locus uce-6346"
BASE COUNT          180 a           94 c          131 g          218 t
ORIGIN      
        1 tctgtagttt gtccatgaaa cagctgatgg actcaatgtc aatcttcaca gaggaattta
       61 tttttgtttc aggaagaata tagaggagta gttatctaaa ccagtggtta taaacctaat
      121 gccttgttct gataccgtgg agaagagttg tgttgtagtt cagcaataca gcttcagcct
      181 agttgtgagg aaatggtgct ttatgagaga agatttaaga ggatcacatt caaaagtgtt
      241 gtttgtgtat catacatggt tgtatccagt agtcttattc agtgctacaa tctttttgaa
      301 cagggaatgg ccaaatccag tgctattgaa acagccagaa gaatgcaatc ttaatttgcc
      361 tgtatgggac ccaagggtta gtgtgttatt ttttcccctc taagtcacac tgtacaataa
      421 attcggttgc tattctaggt gaacttcatt ttgggtttat tgaacttaat gttgtgttgt
      481 cttcataggt aacctctgat tgtcctgagt atagaacaaa ttgactgctt gaagcacact
      541 tgcttttgca ataagtgatc gcataaatag tatatgtctt aaagtgatgc atttttgaaa
      601 atttctaaaa atagtttgct tat
//
LOCUS       KCLJ01003079             498 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 342954cal ultra-conserved element locus
            uce-3016, sequence.
ACCESSION   KCLJ01003079
VERSION     KCLJ01003079.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 498)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 498)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..498
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="342954cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>498
                     /note="ultra-conserved element locus uce-3016"
BASE COUNT          146 a           80 c           89 g          183 t
ORIGIN      
        1 atctgtataa atgaatgtga ggtctaggtt agtaacattt gttcttgcct gcatatgtta
       61 ttatgaaaaa catcaactac aggactccat tgcaagaaat gcttctgtgt aatcaaaaaa
      121 ttgttttgtc tcattttttt tcagaatgtt ttcgtagata aaccagcatt tccagaatac
      181 aaagtttcag atgcaaaaaa atccaaattc atattgctgc attttagcac ttttaaagct
      241 ggctgggact ggcttatttt actggcaacg ttttatgttg ctgtgactgt accttacaat
      301 gtttccttta ttggccatga tgagctgtct acaactcgaa gcacaactgt cagtgacatt
      361 gcagtggaaa ttctctttat catcggtaag gtttgttttt gtttgggatc gacatttagg
      421 attttcagag aattaataat atttagaaaa ggaaataatc atccctttca tgactttatc
      481 aattttagct gtatggct
//
LOCUS       KCLJ01003080             618 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 343060cal ultra-conserved element locus
            uce-4988, sequence.
ACCESSION   KCLJ01003080
VERSION     KCLJ01003080.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 618)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 618)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..618
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="343060cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>618
                     /note="ultra-conserved element locus uce-4988"
BASE COUNT          166 a          122 c          118 g          212 t
ORIGIN      
        1 ttttctaatt tgaggacaat ctggtgcttc tctgaagtaa gatttttttt cgtcaactcc
       61 tctcagttgg taaaaactgc ctgttgtgct ctctgctata aagagttgtg cctcttgctc
      121 tccatcactg taaggaaaag cagtagatac ttctgtgtgt caagaaacca ggaggatccc
      181 atgtcactgc aaatgaacca tgaatttcca gggttcaaag gacaacgaga aagacaggat
      241 gagtcatgtg acttttgtgt tgcaccctga taaatggcag gtcaaggagg gttgtgttta
      301 atagtatatt cctcaatgaa atgtcacttt ttcctcaatg tgtcctctgt gtgagctaat
      361 taaaatcatg ttttactgca atgtcagcac atgaagttgc tgactttctt gttgtcttct
      421 acatagtaca aaatgaatgt tgtcatttga taaattcagg atcttaaagg ttcagtctga
      481 tggggtctaa tgtatgctgc tctatatatg tttaatgctt tcaaactgcc tctcttcctt
      541 tgttcaaatc acagcattca tgacctgtac ataacgttct ctcctgccat ccttaagtcc
      601 tcaaaactac agaatttt
//
LOCUS       KCLJ01003081             769 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 343167cal ultra-conserved element locus
            uce-42, sequence.
ACCESSION   KCLJ01003081
VERSION     KCLJ01003081.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 769)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 769)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..769
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="343167cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>769
                     /note="ultra-conserved element locus uce-42"
BASE COUNT          254 a          134 c          117 g          264 t
ORIGIN      
        1 gtgtgattgt ctgatctggc tatgaggtct cagctctttg atctttaaag aattaggtct
       61 gtttgaaagg gaaaactgaa cactgatatt ggttcatcac ctttgtctaa gacataactt
      121 gaaaaaagga caaatttata attcaaagaa aatacaatca tcatcaactc atttctctaa
      181 atgatttcac aactacatta actacagaaa tatgccaaac aactgagaat ctttgtaata
      241 ttttagtctt tgcatatttt cactgactca ctaaaaacaa aaggagtttc tataactgta
      301 tgaatgaacc atggcatgtg catgttcttt taagaaaggc caagggtgca gttctatttt
      361 cttagctctg ctttcatatt tatgtgtctc atttccagct cattgctgat gccttagttg
      421 cactatccat caacactttt atcctccttg ttcctcaaaa agaacataaa atcctttttt
      481 atgtcgtggt aatattattg caaataaaag caaataccaa aatctttatt agtctgccaa
      541 aataataaac tatttaataa aagcatgctg taaaaataag gtcatttgca tcactcaagt
      601 ttcttgcaga aaatacagag aattattggt caaaaagtac aaactgacag caattatttc
      661 tgccgttgat ctaatgctgc ctggcactga ggtttcacaa gttttctatc tttaaatgtt
      721 tgcttttaat gctgtagtat gcataagagc ctgggagaat caaattttt
//
LOCUS       KCLJ01003082             747 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 343276cal ultra-conserved element locus
            uce-4554, sequence.
ACCESSION   KCLJ01003082
VERSION     KCLJ01003082.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 747)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 747)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..747
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="343276cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>747
                     /note="ultra-conserved element locus uce-4554"
BASE COUNT          239 a          132 c          135 g          241 t
ORIGIN      
        1 caagcaatat ttcctgtaat aaacacccct aagtctaatg agaggcccta aggcaacttc
       61 aaatgtatga attcattata attgaacaac ataatctgca gggcaaagat tcctgctacc
      121 cagtctttta acttcgcacg gcttgggtgt tctatgaaaa atgttctaca ttttgtttac
      181 aatgtattgc tgctatttga agtattgtat gttcctgtag tacataagat ggggacgcat
      241 aatggaggaa aaatcaagga ggcaatcttt cattttgttc tggtatgaaa aattcaaaag
      301 actgaaaact cacccagaga aattttgcaa gcatattatt ttccgatgtt tcgatcaatt
      361 tgtctgtcaa ccatgctgag aggtggaagg ggccagcaaa agcaatttag cttgtgaggt
      421 ccaaaacaga aatgttttag gaaaccttgt cacacattat ttttttatat gagaaccgct
      481 gtgtttttta tttgctagtc atattatgaa gagaaattgg tatcaatcat ctaaatcacc
      541 tatgaatatc tgatataacc gttacttttg tgcatataaa taaggcaaaa aatatttaaa
      601 tgaagctttt aaagcatagc aaaacctttg ggtagacaac aggctcccca ctcaggcttt
      661 cccatctatc ctgtgtgttt taattgattg tacccaagtg acatcatagt gaatcatctt
      721 gcatatgaac atattgacct ctctgtg
//
LOCUS       KCLJ01003083             637 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 343387cal ultra-conserved element locus
            uce-4420, sequence.
ACCESSION   KCLJ01003083
VERSION     KCLJ01003083.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 637)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 637)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..637
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="343387cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>637
                     /note="ultra-conserved element locus uce-4420"
BASE COUNT          208 a          138 c          109 g          182 t
ORIGIN      
        1 tacatttatt agatcttcct tcctctgaac attgtattat taattgtacg acagataaag
       61 taaatatgct ctgtctccat tcctccatgt acacacacct tagagagaga tggaaaaaga
      121 gacagaaaag aagtaaagct tcaatttctt actgatctag agtccaaatt ccagtttctt
      181 agaacatttt tcccttttaa ctaaagtgat gcagtcccta ttcatttgta ttccccttca
      241 agtaacatga aatagctttc agagtctaca gaaaggcagt gtttcactta tgtattttaa
      301 tgagcaccaa tgtcagtaat aatcaaaatg atgtttcact tagaggaata gtttattccc
      361 aggtactttt gcagtgtact aacataacca gaacaagaat gacaagaaga agtgctgcac
      421 tctgtgaagc cctcaaacca aatatatctc ccctctcact gtataaatgc tgcacaaaat
      481 gcagtcactg tgaagggctc acttgatagc caaccctcaa gacccctagc acagtacatg
      541 gaaagaaata gagcatccgt aagcacacca tggcatgcac agagtgtcta tggattagca
      601 gctgctacag caggtttcct caggctatca gctgtat
//
LOCUS       KCLJ01003084             453 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 343495cal ultra-conserved element locus
            uce-3555, sequence.
ACCESSION   KCLJ01003084
VERSION     KCLJ01003084.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 453)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 453)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..453
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="343495cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>453
                     /note="ultra-conserved element locus uce-3555"
BASE COUNT          126 a          109 c          110 g          108 t
ORIGIN      
        1 gggggggaag gcgacaggtc tacaggagga gggcagtctg cagtgctctc tctcatagat
       61 ctccagtggt gtctctgaaa caggagtagg aagcttagca aacagaactc cgggatctgc
      121 tccaaaacca catttaaagt caagtcactg gagtgggatt agtaatcaca atgctgcact
      181 ttattcacag gcagacaaag agcaatacca agggcatgac agcttaaata gccgaccctg
      241 acaggcagat gtaatgtaaa gagctggctc tgcacctaga ggtgaataaa ctcttgtgta
      301 ctcctacaca cttttcctgt ttctgcactt attaagtcac tatttgtagc tcaacccctg
      361 gaaacgtttt aggcgtgcgg catgtctgaa aacatctgtc tcaaatctcc tggcacccca
      421 gcctgaagtg gtcaaacctt gtgacgcagc tgc
//
LOCUS       KCLJ01003085             476 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 343604cal ultra-conserved element locus
            uce-1850, sequence.
ACCESSION   KCLJ01003085
VERSION     KCLJ01003085.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 476)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 476)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..476
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="343604cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>476
                     /note="ultra-conserved element locus uce-1850"
BASE COUNT          145 a           96 c          105 g          130 t
ORIGIN      
        1 agcacccaga cctacaaggc acaaagcaaa cccctccaaa gaggtgaaaa gggggaattg
       61 acttcacaag taatgagagc tctgattaaa catgatacag cactgtttac taacatttca
      121 atttctatgc ctcatttatt agacttagaa taaaaaggtt agaggggtgt ttgggattgt
      181 ctttaacctt gatgatattt ccactgaagc agcataatgg ctcttaattg cttaagtgaa
      241 gagaacatgt tgacatgtcc ttctttgtgc ttaaagccct gtgcctaacc attatgctaa
      301 ttcaagcatt atatacacca aagtatttat gggactgaca caagtgatgt tgcaggtaaa
      361 gggctgtgaa atggtctgta aacagagaga attgattccg ggcccagagc agtgctgtta
      421 aagtcacagc cattgagctg ccagccccac ggtttctgtg cagattgtca ccccgg
//
LOCUS       KCLJ01003086             538 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 343711cal ultra-conserved element locus
            uce-2731, sequence.
ACCESSION   KCLJ01003086
VERSION     KCLJ01003086.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 538)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 538)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..538
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="343711cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>538
                     /note="ultra-conserved element locus uce-2731"
BASE COUNT          192 a           71 c           92 g          183 t
ORIGIN      
        1 tttccttttc atccttaatt tgattatgaa ctattaccat gcccataaaa taggaaagtt
       61 gtacaggttt ctcaaatgct gattttactt tctgcacaaa tactttgtat cttttcagca
      121 taattattta gcagccattt cgggttaatt attgtcatta acaatatgag tcctatgagg
      181 gaatatcaat taaaatatgc acagctgaac tttcaaatga gtaaataatt tagtttttga
      241 aaatgactgg aaacagcagg gtaacagtca aaaggggaac aattatttta atgcttattt
      301 gacaaatgag taatttttac agcaaattag tttcttattg tagcacccct actggtaaca
      361 agagagaaac tgttttttaa aaataaaacc tgctaagata tgcatgcgaa gttaaggaaa
      421 taatttgtat gaagaaaagg tgattatgat acacattgtt agctgaagaa tgttgccatg
      481 ggaatttaat tagggatata aatcacacaa aattatgttt atatataggg ctggatac
//
LOCUS       KCLJ01003087             472 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 343819cal ultra-conserved element locus
            uce-3870, sequence.
ACCESSION   KCLJ01003087
VERSION     KCLJ01003087.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 472)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 472)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..472
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="343819cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>472
                     /note="ultra-conserved element locus uce-3870"
BASE COUNT          153 a           74 c           82 g          163 t
ORIGIN      
        1 aatacaagat attgtatttg gacttgattc ataagctact gtctgtgtac aaactagtct
       61 gacatagctg ctaaatactt tggggtgaac aaaaccactc agcatatccc tttaaataca
      121 gatgctaata catctgttca gtgcaagaag aaaagagttg tttctgaagt aaaattagac
      181 aatagagcca atttcatttt ttatgcatgt gaatgtagag tgcttgaggt tattagttga
      241 aactgagtaa cctttccagg ctttcatctc tttcttttca aatttgaata tgaaaagcat
      301 attcaagtca gagaccatca ctttaatgac atttggcagt catttgattt attagatttt
      361 aggaaaaaaa attcctttta aatatttcat cattctatgc taatcccagt aatattgcca
      421 gctgaagcca tgtacctgta ttagtggaga cagaatggtg tggaattttt tc
//
LOCUS       KCLJ01003088             610 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 343923cal ultra-conserved element locus
            uce-1743, sequence.
ACCESSION   KCLJ01003088
VERSION     KCLJ01003088.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 610)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 610)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..610
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="343923cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>610
                     /note="ultra-conserved element locus uce-1743"
BASE COUNT          184 a          131 c          107 g          188 t
ORIGIN      
        1 tttgttttgc tgcaatgcag agtgaagagc agccctgacc ccatttaatt cctgaaaggt
       61 ggaagcagca aaggtaagga ggaggcacag ccaacctctg gtgaccaaag gtgcgagctg
      121 ttattttgta ttccatactc ttcaaagagc aatataaaca gaattattta tgcccagcaa
      181 aatgttgctt aattacttat gcaccactgt ttgcttgtat tttaagctct ctctaccacc
      241 cacaggcaga cgttaaacag ctgctaaaag cgagctttag tcttgcctgt ttgaaattag
      301 catacttgag ctttgaaaaa actttgttgc caatttacat atgcatagag actgatattt
      361 agactcacca tatgatatgt ccctcaagag cttttcttat tgcctccatc ctcaggtctc
      421 aacctagaga ctgtaaatct agcaggtgat taattctata cccttgagaa actagcaatt
      481 agcacttgca accagtaaaa aattgtcatt tcaaacccct gtttactatg cccatgtatt
      541 ttctatgaac tcacagttaa ctaaatagat ggcaataggt ttgcagtcac tcctgtctct
      601 ttatataaaa
//
LOCUS       KCLJ01003089             692 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 344028cal ultra-conserved element locus
            uce-7423, sequence.
ACCESSION   KCLJ01003089
VERSION     KCLJ01003089.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 692)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 692)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..692
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="344028cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>692
                     /note="ultra-conserved element locus uce-7423"
BASE COUNT          226 a          135 c          125 g          206 t
ORIGIN      
        1 gtgtaagcct agtgcactaa ttgtgaatca ttttgagaag ctgctcattg acagcttcat
       61 gctgggaagt ctaaattact ctgtcccact tttctcagag ggagagaatc atttgtgtag
      121 gtctttctac agcctgaatc ccagcctcca caaaacgaga tgtgctaagt aaagcagcac
      181 ttaggagcct aatgaatgtg catacacaag tatgaagaca cacttgtaag ctggcactgg
      241 taaggaagag tacattattc aatgtatcct ctttgaaaaa aaatcaataa aattcatata
      301 cagtatgctc attgtaaaac gacatgtgct gcatttaata ctcactgacg tgacacttaa
      361 caaacagtct tgaactgaga tctatttgca tttgatttct gtcacagctt gacaaaaaag
      421 tctgttgctt tcatctgctt tttcttttta acacttctaa ccaaagatgc ataggtgtac
      481 cttgcaggca gagtaaaaag caaagtgccc tctaaagggg tctcaaacct ttttcctaaa
      541 tgtttataat atactccaac gttcaatcac tttctcagcc cagcagaaat aataaagaat
      601 actgaatatt tggtgaattt ttaaatatac atgtacaaaa gggcaggaaa tacagaattg
      661 tcctagcctt gaatgaggga acactcttct ag
//
LOCUS       KCLJ01003090             634 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 344140cal ultra-conserved element locus
            uce-7296, sequence.
ACCESSION   KCLJ01003090
VERSION     KCLJ01003090.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 634)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 634)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..634
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="344140cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>634
                     /note="ultra-conserved element locus uce-7296"
BASE COUNT          200 a          131 c          125 g          178 t
ORIGIN      
        1 gaaaaactta tgtatgtaga ttcctctcac aagagcttca gggcataacc cagacagaga
       61 agccatcact tttccattct gcacccaggc tgctgacaaa agaattgtgc aaatgagcct
      121 ttaaatcctt aaatagtcac tacacaatgc atgaaagaat gcagcgcggg acaaagggca
      181 atattcacag tttatctcag ggtgatggat ctgaatcgac gcatgaacat gggtttgtta
      241 cgggatggag taggccgaaa acccctactg agaacccagt ggccacagtc tgtaatgcaa
      301 acagtcaggc taagtccttc acaattaggg taaatggaac tggccattat atgaacttca
      361 acttgttctc atgattgata tgggaaatga aaagttgtat atatctctac aaagactgcg
      421 agttttcttc tcctgaccaa tgctaggaat tggagaaatt cctattctat atttctattt
      481 aatagaagtg cttgcacttt catccacact gcaatggatg ttaccagttt tgttgttttt
      541 ctagaatttt agctactgat gagacaaaat tcatgaaaca aagagtatgc aatctatact
      601 gactgataac ctgacatcct tcacaccatc ggcc
//
LOCUS       KCLJ01003091             504 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 344252cal ultra-conserved element locus
            uce-7303, sequence.
ACCESSION   KCLJ01003091
VERSION     KCLJ01003091.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 504)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 504)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..504
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="344252cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>504
                     /note="ultra-conserved element locus uce-7303"
BASE COUNT          137 a           93 c          113 g          161 t
ORIGIN      
        1 tgataaggaa aagcataaaa cttcttacca aaagaacctt tacaccttca aaaaaggtaa
       61 gggctctgtg gagggacaga gcttagcacc agctcatttt gttcagggat ggttttccac
      121 tcctctttaa aaaaaaaagt cattttatgc acaaggagct tatttcttaa acaaacactc
      181 gtgtttttga tttacaccac gggctgctcc taaataattt atggcgggtt aaatttattg
      241 cacagccctg gccggctgca aattcgaatt gccaaataat tagattttag ggcaatgctt
      301 ataaattatc cgccgatttg tccggacttg tttgtcagtt gctttgtgct tcgggtcatc
      361 tttggcattt cgctgtttgt gttttaattg ctgatttaca ctttgacaga tgagagttga
      421 tgcctccaag atcggggaga gggtgtgggg gcgttgaaga gcagaagagc ttttaaagcc
      481 ttgtgatttt ctccaaggca atta
//
LOCUS       KCLJ01003092             692 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 344361cal ultra-conserved element locus
            uce-7941, sequence.
ACCESSION   KCLJ01003092
VERSION     KCLJ01003092.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 692)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 692)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..692
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="344361cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>692
                     /note="ultra-conserved element locus uce-7941"
BASE COUNT          203 a          135 c          124 g          230 t
ORIGIN      
        1 tttttattta agccaattca taatattttt cttgcatttt ctcatgacac tgcattccga
       61 ctcagttttg aaagccttaa aattatgcat gtgtgagagc ttaattttat ggattatatg
      121 gtattcttca ctatgaagtt ttaaaagata caaaagaaaa accttgctca aatgtagaag
      181 ttatttttgc agtaacgtat gtcatgattt ttaaacattc aggcctttaa actttttttt
      241 tatagtgtat gttcttgcca atcccagcac agttctacaa agtaaaatat ttggcagtga
      301 attcatatta acagatggaa caagaaatta acacgttttt gcttcgctaa ttcacagttc
      361 ttttaatacg ctaattctaa atcacctgtt ctgactttga caggctacag acacctgttt
      421 ggggtaatat tccacagcta attattacat gagaaactca gtttccaaca aaagggtttc
      481 tgtgtgaaat tgtcatagtt agcaaattag taataccaac tttatacaaa aatagcttgc
      541 ggcatttgca tgcgcttaac cttgcctgca gaactgggag cactggggtg cagggggccc
      601 ctgcacacca gagggttggt gtctccatcc ctcaccctcc agagctggaa agttctaatt
      661 cctgctcctt gcagctgagc cagggatacc ag
//
LOCUS       KCLJ01003093             390 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 344473cal ultra-conserved element locus
            uce-2046, sequence.
ACCESSION   KCLJ01003093
VERSION     KCLJ01003093.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 390)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 390)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..390
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="344473cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>390
                     /note="ultra-conserved element locus uce-2046"
BASE COUNT          123 a           68 c           99 g          100 t
ORIGIN      
        1 gatgtaggaa tgactttcca tcccttgcga gaagaaggga aagaggtcat gggtatctgg
       61 cagtgcaggg tgctgctgtg gagcatgttt atggtgtttc acagagaaga gcaccagaag
      121 ggaaaaggga aaagcagagt gtcagatata agaagaagtg atcacaagca caaaggaatt
      181 tatattcaaa tatttaagca ttcttgaaag gatgctcgga gcagaaattc cttttctgtg
      241 ctccccatgt agaaatgact ttaacactca ggcagatgct aatgcaaagt gactccagct
      301 attcctcgca agcatagcta aattgccctt atttgttaag cgcattgaat tcagctgtgg
      361 atacagcagt tggttgcatt cagaaagcat
//
LOCUS       KCLJ01003094             464 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 344584cal ultra-conserved element locus
            uce-207, sequence.
ACCESSION   KCLJ01003094
VERSION     KCLJ01003094.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 464)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 464)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..464
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="344584cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>464
                     /note="ultra-conserved element locus uce-207"
BASE COUNT          145 a           89 c           98 g          132 t
ORIGIN      
        1 aaaaatcagg agaagcattc tagtgcaaaa acttcactgg tgactccatt tactagtacc
       61 actttcattt tgtgaaagca ggagatttac aaggacaaga taagaggact ggcagatgtt
      121 ctttgactca ttcatctgaa gggaagggcg tttggaaatg gcattggcac agaatgacat
      181 ttgaaataat ggcctgtgat tctgttggca cttttagtgt taagcaagtg atctgcaagg
      241 taaagtggat tcacagttag agtcagcacc agtgcacagg tcgcctgtaa aaatagaaga
      301 ttccattatt cttcaggctc cccagaggga gcaaggtctc cagcatcatt accaggacta
      361 aatctgactt ttctacctcc cctaatttcc tcctagtaat tataggtcaa gcactctttt
      421 gtagaatata aaacctttgt tcttatcaaa aatgaatagc agag
//
LOCUS       KCLJ01003095             895 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 344692cal ultra-conserved element locus
            uce-1747, sequence.
ACCESSION   KCLJ01003095
VERSION     KCLJ01003095.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 895)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 895)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..895
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="344692cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>895
                     /note="ultra-conserved element locus uce-1747"
BASE COUNT          275 a          171 c          186 g          263 t
ORIGIN      
        1 agaaggagga acaactctag tcagagttgt aactaaaaag aatatgctta ttcaactatg
       61 tactaatcat tcttttcaaa aggcattaag aagataaaag ggcaaaatgt ccagaaatta
      121 agttatgtga cagactgggc tgcagtttct cagaagttta atctgtaccg ctagtcacag
      181 atgttggcct cagtattttc ttgcagtgtt gtttttgatt gaaaactttg tgaatgtttg
      241 tgatattgct gagagcctat tggcagatga gcatctcttg ctatagtctc catcattatt
      301 tgcctgtctt gtctattaac gagcactatc atcccatcgt aagatgacag ctgcaacacg
      361 tactcaggcg caataaacag ctaaatgagg cgcacagcaa tttcacttgt caccagagcc
      421 ctcggcacga ctggctgcac agcttgatgc ataaattcat gaggctgttg catatgatgg
      481 agtatgcctg gctgaaagag gtgatggata gcagggcagc taaaaatggc catcaccttg
      541 actctgtcag gacatttttt aaaagtaccc catcagctct cttgcattct tttatgtaca
      601 ctatccccaa gctacaggct ttcagaagtc ctgatactta ctgacggttt ttggatctaa
      661 agtcaagttt cttcttaggt tcagtgaatg caatatatgc tactaatgtg tagggtgaaa
      721 tggtcctcta ataattgttc attcaacaca cagtggagtc ataaggttga acactaacaa
      781 cagaaactga gtatgtctaa aatgctggta aaatgcatac atgcacagag agacatatat
      841 gacagcaaaa tttgtgaagc cttgtgcaaa agtagattcg attacaaaca tgcat
//
LOCUS       KCLJ01003096             744 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 344804cal ultra-conserved element locus
            uce-1892, sequence.
ACCESSION   KCLJ01003096
VERSION     KCLJ01003096.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 744)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 744)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..744
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="344804cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>744
                     /note="ultra-conserved element locus uce-1892"
BASE COUNT          240 a          109 c          143 g          252 t
ORIGIN      
        1 tataaatttc aggcaaaagt tttgaagtat tatgtgagct tctaagaaat attttccacc
       61 attttaaatg ttctgttaaa acacagattt ttaaaatata aaaaagaatt tatatgttgt
      121 atgatttaca gtcttggaaa aaataacata gtcataactc tgcggttttt gtgatgcatg
      181 aagatcagat tttttaatgt tggttaatgc tttactaatt aaagtgtgca tgttaattaa
      241 agcagaggct aatgttaatt acctatatta atggaatctc atgtagcacc tgcctgaagc
      301 aatgggttca attttcaaaa tatctcaatt aagactgaaa cttttgattt gcatctagta
      361 gggtttcaat taactgcatt gcaaacttaa ataacacact taaagggata atatcaccaa
      421 tcacatacag cacagtggaa ttggtcggtt caattatcga ctacggctct gagagctttc
      481 acagtcagta ggtaagtact gtggtattgg caagtgatta ttgtctaggg ctgtcatcac
      541 ttctgtggct gttgtaagag agatgttaaa ttgctgtact tgggccgcac tgcaattcca
      601 ttgttgaggg agacagaaat agaatgatgt tttctcacat ccagcattta atggtgaaga
      661 ttcagcttgt tcctttgaaa taaatgacca ctgttccatg acatggtaag gcattttatc
      721 aaatgggaaa acagcatttg tgat
//
LOCUS       KCLJ01003097             548 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 344915cal ultra-conserved element locus
            uce-5774, sequence.
ACCESSION   KCLJ01003097
VERSION     KCLJ01003097.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 548)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 548)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..548
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="344915cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>548
                     /note="ultra-conserved element locus uce-5774"
BASE COUNT          165 a          110 c          117 g          156 t
ORIGIN      
        1 ctgtatgaaa atgagctgct ctgctgtagg agatgaactg acagtgagct cctttctcat
       61 tcacttcaag agcaatgatc catgtcaatt tggatatctg agccatggca ctttaggttt
      121 gattgtacca aaattacata aaacccactg actcagcgtt tccagcacat gtcacatctg
      181 attgtttttt tgcttttcaa taaggtttac aaggccagaa catctaggaa gcagtgccaa
      241 aatcaaatgt agtggttgcc atagctacca agaatctacc aaacaactca ctatgaagaa
      301 gttacccatt gtggcctgtt ttcatctcaa agtaagttca cagggggcca acagagcaga
      361 ggatgtgatt gagaggatga gctgaattct tggacatatc ttctggcttt cacggtaaac
      421 ttttattaat ataaacttgc ctgctaggat taagatagat tatctctgat gtagctttgc
      481 agtatgtctg ggggaaagct tgaatctaga gacagggctg gtccaaaacc tgaaccagca
      541 cagaaacc
//
LOCUS       KCLJ01003098             401 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 345019cal ultra-conserved element locus
            uce-3003, sequence.
ACCESSION   KCLJ01003098
VERSION     KCLJ01003098.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 401)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 401)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..401
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="345019cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>401
                     /note="ultra-conserved element locus uce-3003"
BASE COUNT          129 a           75 c           60 g          137 t
ORIGIN      
        1 ttttcacaat tcaaattcac aaattacgct ttgcttttaa caagtaaaca agtgtacaaa
       61 ttaattcaga gagctgtaat tttgaaaatt ttctatgttt aatgtgcact gcagttaaac
      121 tactttttct gtacaaatta atttactgca tcagtgatcg atgtttatgt ttaggcaatt
      181 ttatttctca gtatggtaaa attagaccta atagttgcaa cctgttatgt ccaatctgtc
      241 actgaaattc aaattgccct ttttcctatt attcaaggag taatttggag gaattaaagc
      301 catctaaaac cagaagacaa acaattctct gtaaggactc aatagcctgt gtcatcaacc
      361 tgctctggaa agcagtggcc tttcctcaac agaaccactg c
//
LOCUS       KCLJ01003099             664 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 345126cal ultra-conserved element locus
            uce-2595, sequence.
ACCESSION   KCLJ01003099
VERSION     KCLJ01003099.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 664)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 664)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..664
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="345126cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>664
                     /note="ultra-conserved element locus uce-2595"
BASE COUNT          211 a          149 c          146 g          158 t
ORIGIN      
        1 caacaactgc tgttcttgtt cccagaaatt ttagcattag aagtatagca agcaattctg
       61 ggagttttcc aagaatggat tttgtactta gaggatggca agcagaaagc agcccgacaa
      121 attttgcatt cacataaata gacataggat tgcaacagat ggggtctgtt taggtttggt
      181 taacagcacg aggaagggtt ctcaactaaa ctgcattaga tgatccatca gcaagagggt
      241 tcagtcgaaa ggactgaaag ggttccattc atttacagct acagccatcc gagctaaagc
      301 ctctctcgcc tgacagcagc aagtggcaaa cttagggaag caatgggtca tgggaaaggt
      361 cccattagat cagtgggagc acacactaaa caaatacagt cacatggatg cacacattta
      421 aatactgccc aagggaatat gtggacatat gttcagtgta gcctctaggc ctcaagaaag
      481 ctatgtttaa aaaaaagaat tccatcaatc agtccctagg ccctgtgaag tatgaagatg
      541 aaaactgcaa aggaaacatg tgctcagctc tctccaccag ctgccccatt aagcagcact
      601 gctctgcaat actgccctgg agaccctgca acttcaattc cagtctccct ttaagcccag
      661 atga
//
LOCUS       KCLJ01003100             356 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 345231cal ultra-conserved element locus
            uce-4445, sequence.
ACCESSION   KCLJ01003100
VERSION     KCLJ01003100.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 356)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 356)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..356
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="345231cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>356
                     /note="ultra-conserved element locus uce-4445"
BASE COUNT          111 a           52 c           75 g          118 t
ORIGIN      
        1 tgtgtaaaga gcactttgtg attatcagac aattcaaatt ctagtgttta cttgtgattg
       61 tttattttac atataataga gtggctggat gatgaagtat attagttctt taataattta
      121 tagaaatgct ttgatgttgc agtaattaca ttaaaggtca catatcaaag gtaatttggt
      181 tgagcagctg tgatggtttc tcagaagcaa tcaatattgc tgtccatggc gctgatttca
      241 ccaaggggac tgccagatta aaggaggctt attaccagac agacagacac gggggaaatc
      301 aagaacagat tggagagatg cactattctt tttcctcacc tataattaac actgtt
//
LOCUS       KCLJ01003101             709 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 345331cal ultra-conserved element locus
            uce-5290, sequence.
ACCESSION   KCLJ01003101
VERSION     KCLJ01003101.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 709)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 709)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..709
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="345331cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>709
                     /note="ultra-conserved element locus uce-5290"
BASE COUNT          230 a          153 c          136 g          190 t
ORIGIN      
        1 aatcaaggta agagccatat gcacaaaata aatggagtct tcctcacctt tggcttgaga
       61 aaacgaaagg gatttcagca ggattgtctt taatccaatt tactttggac ttaatctcca
      121 aaacaaggct ggcctgctaa ttcccaatta taatggcaca tgtaatcaga gtcctcatta
      181 acaaagactg actatattgt ctattagcaa tggaaatctg aaatgcaaat tcagcaaatc
      241 aaaacgttaa atgagctcta cccagagctc ctgccagggc agcgcatgct ggccgacacc
      301 tgccctgaat tctccctcca gctgaatgtt tcattctgtt ccagtctttg cctcctaatt
      361 gacctgctta tgatctctgc tacaattaac atatgcttat tagtaatggc tggttaaaga
      421 tttcaaactg ccgcagttta caaagtctaa tagagatggc acaccacagg aaagataaga
      481 ccactgtttt cctcatcagc agtgtcatag tggtttggtt tcctgcgatt caaatgagat
      541 aatttttcac atcatctgat gtctgcaaac ccattctaat tgaaactgga aatctgcaca
      601 caaagtggct taaggctcct ggtgcactaa atgaaaatca gttagggaat aggaccctgt
      661 aaccacaata gcagcaatgg gaaaaaaaga aggggacaag gaaacaaag
//
LOCUS       KCLJ01003102             590 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 345444cal ultra-conserved element locus
            uce-6628, sequence.
ACCESSION   KCLJ01003102
VERSION     KCLJ01003102.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 590)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 590)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..590
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="345444cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>590
                     /note="ultra-conserved element locus uce-6628"
BASE COUNT          229 a          108 c           89 g          164 t
ORIGIN      
        1 cttaaaattc ttggttgggc ataaaacaga agtcaaaaga taaacaacac aaaccatgat
       61 caattagacc aaccactaaa aagaacagta gccacattga tataattcca ctttgattta
      121 gggtgctatc aaaagtttca acagactata gctccagact ttatctttct tggaagacac
      181 tacaatagaa gccacagtag agactgcctt gtcacgagag gtacaaatac agatggagaa
      241 ataaaaggac aaatctagtt gtctaaaaga caattcactg tacacatttt atttacagtt
      301 ttgtacactg tcttcgtatg aatgggaccg cttttctact tgagccattt taaccaaagc
      361 aaaataacct aagtaataca aagtgttaaa atacagcata agatacctag taaggaatgt
      421 aaattatggt gttacatttt tatgttcagg aaatcacaca aaaagatcac tgatttgact
      481 gaaatgcata aatctgtagc aaagctctga tgttacaaaa aaaccaaaaa attaccaaag
      541 aatgcacaaa attcatgttt attccacctt tgtcatactc ccagattctt
//
LOCUS       KCLJ01003103             394 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 345552cal ultra-conserved element locus
            uce-3680, sequence.
ACCESSION   KCLJ01003103
VERSION     KCLJ01003103.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 394)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 394)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..394
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="345552cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>394
                     /note="ultra-conserved element locus uce-3680"
BASE COUNT          109 a           95 c           81 g          109 t
ORIGIN      
        1 agctgtgtct tgtctctttt aggagcccgg gagattctcc ttgacctgaa aagcagcagc
       61 agttccctgt gctgagctcg gctgtgcgaa cgccaagtgc tccagccagc tttgcatgtc
      121 ctaaccactg tgtgatgctt cctcttataa tcagtccgag catcactgct tctcccaatt
      181 gccccctgca cttaattgac caatagagct agacatatgg aggatcgaat cacaaatcca
      241 aatcagcagt tgtcagagga gattaattca aacaggaagc tacaaaacac ttgtccagta
      301 gaagaaatta ttattaatac agatggtagt gactctaatg caccccaact ttctatgtga
      361 tttttgtagc atttacgtga cactgggaaa ttac
//
LOCUS       KCLJ01003104             305 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 345659cal ultra-conserved element locus
            uce-4741, sequence.
ACCESSION   KCLJ01003104
VERSION     KCLJ01003104.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 305)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 305)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..305
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="345659cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>305
                     /note="ultra-conserved element locus uce-4741"
BASE COUNT          108 a           51 c           48 g           98 t
ORIGIN      
        1 cttctaaaat acttatttgc atttcagatt ggaaatcatt ttaaaaacca ccacaaacaa
       61 agtagcctga aaatagcact gacatttgcc catagtttcc atctgattaa gtggaagtga
      121 cacgagtaga ttagaatgag actaagacaa ttcacattgc aattgtgtta gtttaacttt
      181 aacaatcttt taacatgctt gtttaaatgt ggctgacata ccataattac aaatctacaa
      241 gccttgatta tagaatttta catcatgaac ctatggggaa agtgtattga gtgaagcaat
      301 tcctt
//
LOCUS       KCLJ01003105             758 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 345767cal ultra-conserved element locus
            uce-608, sequence.
ACCESSION   KCLJ01003105
VERSION     KCLJ01003105.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 758)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 758)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..758
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="345767cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>758
                     /note="ultra-conserved element locus uce-608"
BASE COUNT          226 a          130 c          165 g          237 t
ORIGIN      
        1 tttaagtctt catcgtgcta cagagaataa gcatctcata cactttgctt ctctgtgtta
       61 tttttacaca aatcaaccag agtttattta ttcccttatc cagcatgcac atccctttgc
      121 tattggatga ttttgaatta gctttacaaa gattacatgg atagagccag cattgtggtg
      181 gttaatagaa acctgtgcag tgaggtctgt gggctgcaag atcactaaca gtgccaatga
      241 cagtgaagta tggccttatc gaaaggagaa ttcataagag gctgccctgg gacactgcac
      301 cactgtcctt ctgtgtatcc tgacaatgtt atctgtcctc tcagtacgga gtatcaaatg
      361 tctgtcacga gtacagaaat taatttaatg tcacctgaag acatgcaatt aatcttttag
      421 aggttttcat aataccttta cagaaagagt tgccagtttg gcggatttgg attttggggt
      481 ttagcagaag ataaggaaaa ttaatttttc atcagggtta atacaagcta gcagggccac
      541 aaaggctgag aaaaatggtt tgggaatttg tcaagtgttg tcactctaga ataatgctgc
      601 ttaacgtctg ataggtgtaa tcaagagttg agatttctat agagggggat taatcaattt
      661 gctcactaca gaatgcaagt tggtgatacc attccttcat ggggtttaag aatgaaaata
      721 agatttgatc tgtcaaattg caagcagctc tgacagta
//
LOCUS       KCLJ01003106             626 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 345879cal ultra-conserved element locus
            uce-1346, sequence.
ACCESSION   KCLJ01003106
VERSION     KCLJ01003106.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 626)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 626)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..626
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="345879cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>626
                     /note="ultra-conserved element locus uce-1346"
BASE COUNT          168 a          138 c          146 g          174 t
ORIGIN      
        1 cggttcccct ggcttgtctg gcaatcatgt tagtgattat atgggtaatg aaacacgtgc
       61 tctttttgtc tgtggctctg attaatctgc tttctattta gccatgattt atggtgctca
      121 actgttgagg tgagcgctgg cccatcagtt ccgtggccta ttacgggcgc cgcggcggcg
      181 aaatgcctgc gaggcttgaa ctgtttcttg acagccaggc ttcccgctac attccctcca
      241 atctgttttg cttcctggtg tgacctttca tacagtaaaa tacattagtt gaatagcaca
      301 gtctcattaa aagagtgaat taaccgaaga gtctttttaa ctaaatgaca gccaaaggac
      361 tgagtgctaa tagccacggg cagttagaaa cttaactcat gaatcaggct gttaatactg
      421 ctcgctgcct gaagcgctaa gggcaccaca ctctctgctt gctctcataa gaagaaaagc
      481 tcattacttt cctcctgatg ggagagaaag agtgagcgag caataataaa gcttgaattt
      541 ttcaatactg ttaaaaatgg ggctgacaga ttgccgacaa taggagcaac gggctagaca
      601 ctgcaaagag agccactgaa ttagca
//
LOCUS       KCLJ01003107             674 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 345988cal ultra-conserved element locus
            uce-7949, sequence.
ACCESSION   KCLJ01003107
VERSION     KCLJ01003107.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 674)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 674)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..674
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="345988cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>674
                     /note="ultra-conserved element locus uce-7949"
BASE COUNT          185 a          116 c          112 g          261 t
ORIGIN      
        1 gtcagtttta aaccaaagcc cacagaaaaa atgaaatatc ttccattatt tgattcactg
       61 acatttttat tagagatatg ctgcagtgat atccagattt attttgctgt tattacaggg
      121 agaaaagagg ccagaactat gctccatatt atgcataatg tagaaaattg ccaagctttt
      181 ataaaatatg tttatcattt cttaatgtga tttatttgcc ttgtgtttag actattgcat
      241 ggtaaagttt attttgtgca tatacttttt attttactaa tatattacaa gccatatctc
      301 aatgacccct gtacattttt catgctgtct tactcccaat ggcctctgtg catgtaagta
      361 acctgtcaag tgacaatgcc tctttatttg cttcttactg tttcctttca agaactcctt
      421 ttctttatca gctagtaact cagaagcatt gaagttcagt cgtgtgccct gtattcctcc
      481 tatcttaatc atttttcttt tgcatttgag aacattagtt aaatccatgt agactgagac
      541 acattttctc tttgtgatga aggatctgtg tcatttctgg tgtttgttcc tgttgtttgt
      601 atctaacatt acgtggtttt gttcaagaag aaaaaaaaga cacttgtagg cttaggtggt
      661 tagcatggta aagc
//
LOCUS       KCLJ01003108             454 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 346099cal ultra-conserved element locus
            uce-6249, sequence.
ACCESSION   KCLJ01003108
VERSION     KCLJ01003108.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 454)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 454)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..454
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="346099cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>454
                     /note="ultra-conserved element locus uce-6249"
BASE COUNT          128 a           99 c           90 g          137 t
ORIGIN      
        1 tccctttcct ttcattcata aacctggtgg ctatagacgc agcttgaata ttgacgtctc
       61 ttcccccaac tgctcctccg ttaacccaat tacagaattc atcaagaact gtgttgaatt
      121 atctctttcc atacagtatc agcattagcc taattaaaag ctataatgtc tgatataatg
      181 attaaatcgt tagctctgct gtagggaagc aatattttgt tttcccttca attagaagct
      241 gattgaggtt ttcagagcag gtcagctgtg aaatttgaat tatatgtgtg agtaccgttc
      301 acagggtgag cccctactcg aaagctccag agattctcca tacgctttta cccagcaagc
      361 tgagaaaaga caacaaaaca cagagagagc ctgtagctga tttggggctg atgctgtagg
      421 atggcacaga acagttgttt ttattcaggc accc
//
LOCUS       KCLJ01003109             644 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 346209cal ultra-conserved element locus
            uce-5924, sequence.
ACCESSION   KCLJ01003109
VERSION     KCLJ01003109.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 644)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 644)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..644
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="346209cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>644
                     /note="ultra-conserved element locus uce-5924"
BASE COUNT          199 a          146 c          117 g          182 t
ORIGIN      
        1 tttacagcag catttcaagc acttccatgc ttccactgct gtttttttga agtcaagata
       61 agtaaagctg cagagctcaa gagagaagag aaaccaactc ttcttttaac tacatctgcc
      121 ataacactct gcacatactc taagagaagc gtgcaaacga tttctgccat ctactgtgtc
      181 tttggtaaag gtttgggata gcacttgtcc ctgtaggcct tacctcatat tatgatcatc
      241 tactttattg tgtaacggat cttttagtta cctccccgcc catccatgta cacagaaggg
      301 ccatgtacat ggcgaagcta gagactgtaa cctgaagatt ggggacaaat taaagaaaaa
      361 aatgtgattt aacagaatta cattaagtca gggaataatt ggagtcaagc tatacctgat
      421 tgcttccagg attaacttca gcagagtatt atacattatt gaattttacc agttaaccta
      481 gttctcctac cccccactgg tggaacctca tctacaatca ttaatattaa gcaaatgatg
      541 cttcaaataa gtatcaaagc ctcaccttca gacgaccact ggtctttagg cacttctgca
      601 accagacagt ggtagaaagg gtgctcgcca aaaccatcct caag
//
LOCUS       KCLJ01003110             956 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 346428cal ultra-conserved element locus
            uce-2114, sequence.
ACCESSION   KCLJ01003110
VERSION     KCLJ01003110.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 956)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 956)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..956
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="346428cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>956
                     /note="ultra-conserved element locus uce-2114"
BASE COUNT          294 a          182 c          178 g          302 t
ORIGIN      
        1 gccaaagact gtctcagttt atgaattagc atttaaaact actgtaggtt atctaacaag
       61 cattcagatt caatagtact tttgacagca gtaagtaaag agccttttaa catcttgaac
      121 acatgtgctt gaaaaaagta gttgcatcaa agcagttcaa agactgcaga caaaaaccag
      181 ttaaaatcca gtttgctgtg agatgatttt agtgtggtgt aaacaacctt tcacgactcc
      241 ccatgggaaa tgttgtaaga ctatgttcaa aatgaatcag gcatatttat aaagatcatg
      301 aagtggtcaa atgcatttgc atttttggca gatccactcc acgggtacta cttgctacag
      361 tctgtagaaa tctcaaatct cacatcagcc ttgcctatag tgctttatta tttattacat
      421 gttatgctaa gtacctgcga aaggggacat tccttggcca atgaactctg gttcatatcc
      481 ttcagtaagt ccttcagagc atttcttact gttgtgtgag accattgttc aggaggcaag
      541 tcttctagtt tagggcaact atttgaaaca cagattagaa aagggattat tacaagattg
      601 catcctgctg cagaacattc ctttaagaca gacagatttc attttgcgca tcaagcagat
      661 gcatctggag attgctctcg gtctcctgat tgttccgatt agttaattac tttatacaac
      721 acatctgctg tattgatgca tgaattatac atcagctgca tgtggcgact attttttcat
      781 gttacttcta ccttcctgct ctgatgcgct tggtaaaaca atttaaggtg taatgctttc
      841 tcacgactga tcatgaaaag cattaatata ttaacctgtt gccgtgaaat ttaagaacct
      901 agacagcaac aataagtgag agcaagtcat tcttttacaa aatgcacaca gatggt
//
LOCUS       KCLJ01003111             611 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 346541cal ultra-conserved element locus
            uce-6191, sequence.
ACCESSION   KCLJ01003111
VERSION     KCLJ01003111.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 611)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 611)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..611
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="346541cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>611
                     /note="ultra-conserved element locus uce-6191"
BASE COUNT          172 a          120 c          138 g          181 t
ORIGIN      
        1 ctttaacttg aagtggacag ttcatttatg caatatctgg cttcagataa tgaaaggcac
       61 ctgcaaaaaa gcaaaagaag ctttttaagt catgctgtga caacctcaca gcatggggcc
      121 atgccaacta caggttgaca atgtcatatt taatactgat gtatcaaagg aaagggacta
      181 atatttttat tcctaggaca agtttgacaa aactctatgt atctgggatt atatactgta
      241 atgattcttg agctgacctc attaagaaca tgtgtttcta atagtggaat gccagcggtt
      301 atttcatttt ggacaactct tatgttttac ctaatggcaa tcaggtttca tgtctcaaca
      361 attaataaca tcaagatgtt gttgacatca cttaagaaaa taattatgcg gcagaaatcc
      421 tgctcgaaca atcagctatc tctttgagga gaagtagcag tgagccctga ggatctctct
      481 cagaactccc tcccttgcca gtgtactcac tttggccgta ctggccgtac tggtagcccg
      541 tgacggggtc catgctgtat cccgtggtgc tgtaggttgg tgggcagtag gactgggatg
      601 tgggcaggct g
//
LOCUS       KCLJ01003112             776 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 346652cal ultra-conserved element locus
            uce-2164, sequence.
ACCESSION   KCLJ01003112
VERSION     KCLJ01003112.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 776)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 776)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..776
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="346652cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>776
                     /note="ultra-conserved element locus uce-2164"
BASE COUNT          214 a          174 c          186 g          202 t
ORIGIN      
        1 agtgtgcttc attagctaat tttggctttg gacctcccac gatgcccagg gtaaggtaat
       61 aagaattagt gtcaactgtg ggtcagggat gtcacgatgg tatatcatta aaatgtgaca
      121 ctgccaaaaa ctgccccaac tccgctgtcc ttagaaaagg agcccttgga tttcgggttg
      181 cacggtgcca cagcgtggat gaattgttca ttttgaggga gcagccagcc gcagatccgg
      241 acctccacag tgtggtgagg gcctggcggg cacaaagggg gagttctgta gccagtgaat
      301 aatgggaagc ccctttcatc ggcaggacta accttttggc agccaccagc acactctatt
      361 ctgatctgct gattggggag gacaatacac tgaagcttac tttgaatgaa tgctgccacc
      421 aacagtgtcc ccattcaggg gctttgggaa ccatctttgg ccattgtccc cctgcactcc
      481 ctcagacagc aggaaaaggg aaagtgagag cagctatagg gggaaaagta cttcttttct
      541 tggctttaat ctctctttaa agcttcatag atctacattt ccagctgagc tatgcagtgt
      601 cagataaata cagaagagag aggtttcaag ctgagctttc aaatcccctt atctgcatga
      661 actaataatg cagatttagt gctgttaaaa acagagactg ataagtcttt tcctttaaag
      721 cctttaaact gctaaagagc atttaacagc gatgcagttc aaacccaatg aacaat
//
LOCUS       KCLJ01003113             618 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 346757cal ultra-conserved element locus
            uce-4927, sequence.
ACCESSION   KCLJ01003113
VERSION     KCLJ01003113.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 618)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 618)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..618
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="346757cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>618
                     /note="ultra-conserved element locus uce-4927"
BASE COUNT          209 a          118 c          117 g          174 t
ORIGIN      
        1 aaacagaagc aaaaaaattc tcagagatca gctgttctaa ggagagaaac ctctaaaaac
       61 tcgcttaaaa aattattatt ccttgtgaga gatcctcaga acaaactagt tcattaaagt
      121 cgtatcagca cttgtaattg gcccttgttg gccaatagaa ggagacattt gcaacttttc
      181 ccaggaaatt atattctaaa tccttcataa ggtggacctt gtccttttct gaggaaactt
      241 gatagcagtc tttagtattc actggcataa ttaggactgc agttaatttc attaaattct
      301 cttgctgcta aatgaagcag attatgagac atcttttatt gcaaggcatg aaattacagc
      361 ctgtcagctg ccaatggtag agtaaaacta atgaattaca gggtaaataa caccagaatt
      421 aaccagccaa tttaacatag cagagaacaa agtcattttt acttgggcca ccactgctgg
      481 gatccctttc agcaaaggga accaacctca aatctatttc ttgggcagca atgttaaaaa
      541 accaacactg ccaagaagtt gggagaaaat tggacggcat cgctaaattg tgctatgtcc
      601 aagtagtttg tgctgatg
//
LOCUS       KCLJ01003114             775 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 346870cal ultra-conserved element locus
            uce-7979, sequence.
ACCESSION   KCLJ01003114
VERSION     KCLJ01003114.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 775)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 775)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..775
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="346870cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>775
                     /note="ultra-conserved element locus uce-7979"
BASE COUNT          208 a          185 c          194 g          188 t
ORIGIN      
        1 gagcaagtcc ttcttgcacc tcctctgatt cttaatcagc tggtggcatt cccatgcagg
       61 tgatggtgtt ggagcgtgtg tatccactgc tcccatctga taaagaattt ataagggaac
      121 aaatacagca caaagaaaat gtttgtaatg tggagcttcc cgatgccggg ttaatcaaga
      181 ttatctccaa tggcagcgag agatttgatt gacatattta acctctattt ctcactcttg
      241 ttctgccctt ttcccgacct aaggccaaca aagtaatttg gaagtcgaac ttcacctaag
      301 tgttaatgat gaagctctgg gaagtttctc ccgtaatgag gcaccatgca ggaggaagta
      361 ccagttggga ttcctattgc agccatatgt gaggccaatg ttgcatgaat taacatacgg
      421 tgggtcaagt taacatatgt acagtgaaaa atgactaatg acttatcaca ctgatgttat
      481 ttttggacct tcctgtacgc aacctctccg aggcgaacaa gttttatgcc tcgactgtcc
      541 cggttccccg ggaagaaaga ggaaagtgaa accatatgtt tagcaaaggg aggaaagcga
      601 gccagagacg caacgctgga atatcagcat ggggcagcgc catcctgcag cacgcagcca
      661 aaggggatga atgcccagca atgtcccccc gccgccaggc agccgaggca gcggcgtgcc
      721 tggatgacag atgctgccgg agccatccca caggctgcat tcagtgccct cggtg
//
LOCUS       KCLJ01003115             415 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 346982cal ultra-conserved element locus
            uce-4450, sequence.
ACCESSION   KCLJ01003115
VERSION     KCLJ01003115.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 415)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 415)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..415
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="346982cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>415
                     /note="ultra-conserved element locus uce-4450"
BASE COUNT          117 a           89 c           84 g          125 t
ORIGIN      
        1 tgtgaattaa aatgtgactt ccttcaaagg gaaatcaaaa ctaatcttcc cctaggtccc
       61 agtttatgtg gcacagagca gccagcaata atcaaaccag agccatttag tgtatggtct
      121 agtcttgctg tgactaatag gatgattggt tgtatggctt ctttatggtt gttcattata
      181 tcacccttac ataaagtaat ttaatttcag tgggataatt agggtatttc taatctaact
      241 gatagtctga atgaaatgag attctcagag ggagatttgt gtaccaggag attggtgacc
      301 tccggcccca attttcacac aatgtattaa gctgacagcc tcacttccaa gccctgctgc
      361 actggctcct caccacttgt gcagatctca cagacagcaa ctctcaatga ggctc
//
LOCUS       KCLJ01003116             537 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 347089cal ultra-conserved element locus
            uce-5107, sequence.
ACCESSION   KCLJ01003116
VERSION     KCLJ01003116.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 537)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 537)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..537
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="347089cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>537
                     /note="ultra-conserved element locus uce-5107"
BASE COUNT          192 a           95 c          106 g          144 t
ORIGIN      
        1 tgcccaacac cagccccacc agctctgcca aactgcacat tagcaaacaa ggaggaaacc
       61 cacagaaaaa tttccagaag gacaaaaaac ccatcaggtg tgtcaaatct ctgacattca
      121 gaaaccattt ggggaaagca gcacacgctg acttaagcac taaagtatgg atgctttaat
      181 taatccgggg tgaatttaat tgctttagtt aagtggaaat cgggttaaaa atgatgcaga
      241 gcatgctggg gtgtgttaaa aacatgacat atgagttgga tgaatcgata aattaaaact
      301 gcacagatgt tttaattaaa cccaggaaac ttaacgaaga tcactagaga cttttaagcc
      361 tgtgattaat tcaattcatt taaaatacct gtagagatat ggggatgcct ccattttggg
      421 agttatagaa gttctcaatc gataagtact taagctgttc tacaaaaaaa atgggatgat
      481 ttttatagaa gtgactggac agcattaact gcacaattaa tatttacatt cttctga
//
LOCUS       KCLJ01003117             403 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 347197cal ultra-conserved element locus
            uce-3383, sequence.
ACCESSION   KCLJ01003117
VERSION     KCLJ01003117.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 403)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 403)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..403
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="347197cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>403
                     /note="ultra-conserved element locus uce-3383"
BASE COUNT          137 a           73 c           71 g          122 t
ORIGIN      
        1 agaaatgtga aaattagaaa ggaggaagat ttcatttata ctgggatcag agttgttaaa
       61 ttccccaatt ttttttcata aataacagta tgactccatc tgtcaaagtg gaaaagattc
      121 atccaaagat agatggtgcc caactgaaag ctgctgttgg tccaacttgt actactactg
      181 tgagttcctc aataaagact ggccttaatt gtccctcaat accaaagcca cccttgcctt
      241 cccctggaca gatactgaat ggtaaaggtc ttctctctgt gcctccattt ttggaaaaga
      301 aacctgaaga aaatacgaat aataggaaat ttttacataa aagattgtca ggtaactata
      361 ttccttttcg tagaatatgg aaataagttc aatactgtaa att
//
LOCUS       KCLJ01003118             709 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 347307cal ultra-conserved element locus
            uce-6818, sequence.
ACCESSION   KCLJ01003118
VERSION     KCLJ01003118.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 709)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 709)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..709
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="347307cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>709
                     /note="ultra-conserved element locus uce-6818"
BASE COUNT          206 a          118 c          152 g          233 t
ORIGIN      
        1 atcatctttt aactggtggc actttaaagc atagggctaa ctgagaggat agcagacttt
       61 aagcaggagg ctagaacctt agcttcactt tggtttacag attgcagaca caatactgaa
      121 caggtatagg caccaaagtg taggaaaaca gctaattata gtaattgcag ctggtttcaa
      181 agtacttcta acagtttgtg cataatgctt acttgaaagc atcaaatggg cgctagttgt
      241 gaaatagaac acctgtttgt tgttgagcat gtgtttatgc agatgatttt tgttgtcaaa
      301 gcaccttgat gtagagtagt cctgtttaca tttacattct ccccaaagga ttaacagtgt
      361 tctctcaata aatttacagt ctattctcct ctcaaaggct gctgtttgga gggtggtgtg
      421 aacaaggcaa caagtgcttg ctaatcactt gaatatacat aattagcgac agtctggtgc
      481 actggagtct ttgtacagcc acagcaatac tgattggcag cagcagataa caatagtcgt
      541 ggcaaggtgg tatttgttga atatttgaag gtggtttttt ttcatatttg cagtaggcat
      601 tttgagttaa ttacaccatt attctggaac acacttacta tgttatttta atgtcaaaga
      661 tcagtcatgt ggcctgttta gtaaatcttt tacttcattt gagactaag
//
LOCUS       KCLJ01003119             835 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 347413cal ultra-conserved element locus
            uce-772, sequence.
ACCESSION   KCLJ01003119
VERSION     KCLJ01003119.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 835)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 835)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..835
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="347413cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>835
                     /note="ultra-conserved element locus uce-772"
BASE COUNT          266 a          157 c          146 g          266 t
ORIGIN      
        1 taaatgaaat cattactgaa tatggcctca caaggcaatt ttgaaccgtt cttgtctata
       61 cccccttgtc attaactggt aaatcagtaa tttatttcct attagaattt atatagtttg
      121 cagcaattaa gaagaaaagc ataattgctg acaaacccag ggcactattt aaatcacttc
      181 cttgttgaca acatatttct ccttcctaaa actgaatgtc actgaaatct gatttgaaca
      241 gaacccttgt ggactcatca ttcaaatgta ctgcacctgt cacctgtgtg ctagcattct
      301 gctaaggatc aatttacata acctcattta atggttcata aatcataccc attaagccca
      361 gctaacagga accaagggtt ctaatttatg ctgcctttca tagcagaaaa ttgggaggct
      421 ggagcctgtg gataaagaac ccaggtcttg cctttgattg ttgattgtga tggtaaatgt
      481 atggatgatg agaacagatt ttcactttat tgatttcctg ccaaagcaca gcatgcttta
      541 ttgtgaaagg gggccttttg gcagcagtgc taaaagtggc agttgtttag gagccctttg
      601 ccaagatgac atctaagaca ataccgagtg gtaaatacta aaataatatc aagctgaaat
      661 gttaattttt aaaaagaaac atccccaaaa aactcaatga tgttttctac cccagagcac
      721 ctcgctaata aacatgaagc caggtgatta ctgtgggttt ttctaaaatc tatttttctt
      781 aaattctgta ttctattata aattattcat ggtatttcag tcaaagtaat gcaga
//
LOCUS       KCLJ01003120             432 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 347527cal ultra-conserved element locus
            uce-4140, sequence.
ACCESSION   KCLJ01003120
VERSION     KCLJ01003120.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 432)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 432)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..432
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="347527cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>432
                     /note="ultra-conserved element locus uce-4140"
BASE COUNT          138 a           86 c           70 g          138 t
ORIGIN      
        1 tcttttccta gcaggactta tgcctggcag tcctgtgatg agaaatttga ttgctacaat
       61 taagggacaa acatcctgtt aaaatatatg atgcatccca taatctcaac ttgtttcaca
      121 ttaatatcaa ctctgatcaa acgagtcgac tgacattcaa atctaatggt taaaacctct
      181 gcaccacaga tatacaactt caaccttttg aatgctgcca ttccatatat ggactttacc
      241 cacattttaa tgaggcttta aaatccctga gattaagata gtattttata tagaactgcc
      301 tgctttttat gatatcctga catgttgtac aacatttgtg actatattga tccttataaa
      361 ttcagcatcc aaacagcagg gtaggggggc agttcttgag cttcagcagt aaagaatagt
      421 ttagtaacac aa
//
LOCUS       KCLJ01003121             510 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 347632cal ultra-conserved element locus
            uce-7537, sequence.
ACCESSION   KCLJ01003121
VERSION     KCLJ01003121.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 510)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 510)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..510
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="347632cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>510
                     /note="ultra-conserved element locus uce-7537"
BASE COUNT          153 a          110 c          123 g          124 t
ORIGIN      
        1 gatgctggag cgctgtccca aatggcagac cagagcctgc tgattacatc cagcctgaga
       61 tcctcggtgt gtgcgtgtgg gagaaggggg atgcttatta gaccgaatgg gagttggtgc
      121 tctgcggccc tgaggatgta aggaagattt gctaactttg ctttatagta ttcatgcaga
      181 taaggaagac tctcagtctc caatcataaa tcggtattat acagtatact cccaaaggcc
      241 ataattactt ccagaagcag aaatttgaat gacccagata attagttcag tgcagctggt
      301 ccaaaaatta tttacataaa agccagtttt acttgagggg gaagaaaaac aaccttgcta
      361 ccaaaagcaa atgacccagt tagcttcatg ctatgagtat gaggagacag agcacgagtg
      421 gcaacacagc ggcctgtgcc atcacttctt ccctcttgtt ttcagaggac acacaacgag
      481 cctctctata gacaaacatg caggaaggca
//
LOCUS       KCLJ01003122             692 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 347737cal ultra-conserved element locus
            uce-4591, sequence.
ACCESSION   KCLJ01003122
VERSION     KCLJ01003122.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 692)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 692)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..692
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="347737cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>692
                     /note="ultra-conserved element locus uce-4591"
BASE COUNT          201 a          153 c          136 g          202 t
ORIGIN      
        1 gagaggcaaa caataaaagc tgggaccaaa ccagtttgcc ttctcctttt gtgcagtgca
       61 tgtaatgact gaacttttga ctttaaagtt tttctctagt gcaatactgt agaaaaggaa
      121 acaaacaaac aaacatcccc ttggtgcaaa gactggtcta aggcaatacc tggtgagtgg
      181 aatggttgtt tttgtttact tgaagcagat aaaacaccca ccttaaaccc gccctctatt
      241 cagttcagca gcacctccat actccaataa accgttttca ttccatctgg cgtgcgtttg
      301 ctctgaagac attttcctgt caatctctcc tgccacatta aaaatctgtc attactattg
      361 cattgccgcc tggctcctga gatttgtctg actgctttat tgctccgctc actgctacag
      421 ccgagaagca gaaataaagg tttgttgttg aaacatggcc gcaaggaaag taggaggcac
      481 acatctgtca aggtattacc tttcttcaac cagggattaa ggtgttttac tgctctcgct
      541 actgagcagt cacactgaat aaattttctc agtagaacat aaaaatgaac tcatacattt
      601 tgaactgggt ttcattcttt caagccaacc catataatta tgcaatggca tcagtgttcg
      661 ggggaaaaag aagagtcaga aacgtttgtg tg
//
LOCUS       KCLJ01003123             710 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 347842cal ultra-conserved element locus
            uce-2529, sequence.
ACCESSION   KCLJ01003123
VERSION     KCLJ01003123.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 710)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 710)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..710
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="347842cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>710
                     /note="ultra-conserved element locus uce-2529"
BASE COUNT          253 a          112 c          152 g          193 t
ORIGIN      
        1 attcaacata tcaataattt taatataaag tggtaaagac atggaaaaac aaaaccaaaa
       61 aattactgtt gtgcatgaag gtttctttat gatccaactt gcaacatttt tataggttgc
      121 atgtctgaaa gaacacacat ataatgatgt ttaaagtgta gttcagagca aaattattgc
      181 agtatatata tagtgaagcc atataacaaa agagcagtag ctagtgtttg cccttatatg
      241 agatgcagtc atataataga gagccttaaa gctagggttt actgtacttt gggaattaat
      301 cacataaact ataaattggg ttcaacaggc tggctgggta aataggcgca gctaatgagg
      361 acactatgag atcttataag agcgctgact gccccaggac aaaagtgccg agctgcacct
      421 gatggaaaac tagaagacat caaagcataa aggattagtg ctctcacagt gttgagaaat
      481 ggccaggggg agattcacca acttattacc cacatccaag ctaatcctgt tatctgcaaa
      541 atatgactgt gttcaggaac tgccaccacc taaacttgca ggagactaat tctgtgttta
      601 catggacaaa agtgagggga attttcatct gggcaaagaa tatgagagaa gggaattttt
      661 aaggatttcc tttgtatcga atgcttgaag aggggaaaat ataaaattag
//
LOCUS       KCLJ01003124             803 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 347954cal ultra-conserved element locus
            uce-4863, sequence.
ACCESSION   KCLJ01003124
VERSION     KCLJ01003124.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 803)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 803)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..803
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="347954cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>803
                     /note="ultra-conserved element locus uce-4863"
BASE COUNT          198 a          163 c          141 g          301 t
ORIGIN      
        1 agaagaacta tttaacatgt tttattttgt ttttcattta atattataga gggaaggttt
       61 ttttgttctt taatttcctt atttctagtg ttgaaaccaa tatgttttaa aactaaagga
      121 tgggttaata agcttgaaat agataactac aactgaaaac tgcacattaa gtaaaagaaa
      181 agaaatctcc tattttgtct ttgttgccag aaatcacagt gtagtgtcaa acactccaaa
      241 tgactgtcaa atataaattc ttcttccact ccatctttgg cagctgtttg ttaaggcatc
      301 taataacaga tgtgagaact gtaatgtgta caatgtgtaa gtgtccttgg ctgtcagtcc
      361 cattgcagtt tcaatgtgtg ttactatatg cagtatatac taagctaatg tagttgtttt
      421 gtcctttgtc ttctctgtgc tttatctcta gtccggagtg gtaaagtccc attcctgcag
      481 tcctagtgaa ccagtgattc ttgggggtta gtggtttttg tgtggtggcc ttcctctgta
      541 atgtcacctt atgctgcttc cactgtctgt atacctttta atttctgctg ttgctttgct
      601 gttgtgtatt ctcaaacccc cttcctttct ccctacacgt ttcccgtctc tctttctctc
      661 gctctctcgt tctctcttct tcactctcag agataaaaga ctcttaacta gctcaaggtt
      721 aatggagcca tttttcccac agaggaattc tgggtatgac ttactcttcc agtgtacccc
      781 acaatgcact acagagtaat gct
//
LOCUS       KCLJ01003125             967 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 348066cal ultra-conserved element locus
            uce-1624, sequence.
ACCESSION   KCLJ01003125
VERSION     KCLJ01003125.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 967)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 967)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..967
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="348066cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>967
                     /note="ultra-conserved element locus uce-1624"
BASE COUNT          292 a          195 c          149 g          331 t
ORIGIN      
        1 ttgactatca tttgtttatc aggaaaagac tggtctagac cttaatcaaa atgaggaaaa
       61 ttaaattcct actaattagg gagtctcagc acttgctaga tcttttcaaa gatgaagagg
      121 ttaatcattt gcagtcagac agtaagaaat gaaccacttg tcttttcctt catcctctat
      181 gcagttcctc catttcaaca tccttgttac taaatctgag acaatgtgta attatacaga
      241 aggaaatctc tctggggtat agctgaagtt gtttaaattg tgctgattta caaagatgaa
      301 ggatttttaa aaaaaattac ctttttttca taatggcaaa caacctcctg caaagtcaac
      361 tccttttctg aaagtcattg ctagttttat aatttctgag tcattagata acagatagaa
      421 ctccacactt agtggtttca aatgtttatg gtctgcaatt cattcttaat gagctctctc
      481 catgtcttta ttcttcttca caccctcctg ctgggaaatg tcttactctg ccttggcttt
      541 tgttaatgat tccacaatca tttcagagcc atttcttctg ccttatgtaa ttctgacact
      601 gcataagagc ctggctctgc agcctcacag ttggaaatgt aacctttaat gtattaattt
      661 ctcttgctca aaacaattta acctctgtct tggttttgtg attgctaagt gttccaatta
      721 aatgcctctt tcattttttg tcctggaggg cttgatctta ccagtattat gtttaacata
      781 ccctacctag caaatgatga gcactccagg gtcccctcaa gtgttcttta tcaatccgtt
      841 atctatctca ggagtgtctg tcacattttc aaaacaacaa caacagaaga gattaattaa
      901 actactttta aacactaaat aacaaaaacc actacaagtg gaaacaaata attacatagc
      961 cggagaa
//
LOCUS       KCLJ01003126             845 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 348176cal ultra-conserved element locus
            uce-6823, sequence.
ACCESSION   KCLJ01003126
VERSION     KCLJ01003126.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 845)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 845)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..845
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="348176cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>845
                     /note="ultra-conserved element locus uce-6823"
BASE COUNT          275 a          134 c          125 g          311 t
ORIGIN      
        1 gacatacata tatcctttat ttaaggtgac aaaaaactta aacagatctt tcagtactgt
       61 ctcatgcaaa cagagtacat cactagcctg gacaccaagt tatttaaagc tattatttag
      121 tgctgtaata agtagcaatt taaatacaag gtaaaatcat tacattgtct tgtttactac
      181 tgatgttaat gtcaagctga cgtgtaatgc tccaaaaaaa ggcagcctat gatttgttat
      241 cattaaactg tcagttctgt cgtgttaggc atagattcat actatattct ttcagcatat
      301 ccctttattt tctatcagtc aaaaactgaa gtgttttaat tgtgtctctg ctatttttct
      361 attaactgtt tcgtgcattt tttctctggc cttttaattg cagtttaata gtggtcatta
      421 acacattaag gggtgttaga agaacatttg aagtcctctt gacttctacc aaagttgaca
      481 cttcaatgct agagtaattt cagctattca tttatttaat agtgacctat gcaaatgtgg
      541 aaccatgtca ttttacaaat tgactgtaat aattaactag aaaggcagac taaaatgaaa
      601 caggttataa ttagaataaa actgctacag tattacgtca gctagaataa aataatctca
      661 aatgattaaa ttggtttcaa ttattaagaa tcagtttaat gtacccactg ttctgatttt
      721 ttacatttct cttttttgtg tgcattagat gtcacctcat acaatttatg cattttattc
      781 atcttggtaa aacaggcatt acaaaagttt aattaagtag taaaagactt catattattc
      841 cgttg
//
LOCUS       KCLJ01003127             702 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 348288cal ultra-conserved element locus
            uce-3609, sequence.
ACCESSION   KCLJ01003127
VERSION     KCLJ01003127.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 702)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 702)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..702
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="348288cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>702
                     /note="ultra-conserved element locus uce-3609"
BASE COUNT          233 a          138 c          156 g          175 t
ORIGIN      
        1 aagacataat gaagcctgaa ttaaaaatgt cagtttctgt gaatgttgat aacttggttc
       61 tttgttgtac aagtcaaaat gtgtctgttt gatgggttaa aatgacagtc tgcaaatggg
      121 agaagctaga gctaaaaaaa gaagacactt cccaaaagac ttataaaaag taggcccgta
      181 atgcagtact ttaaggagaa gacctgtagg gtagaagagc cagtatcttt agaaagtaac
      241 caagcagcac taaaaggcaa tgtccatggc caatcaaaac tatttctcta gctgctgggg
      301 ctcttgcatc tctgccttca cactagactg gaaacccttt gtactaattg ccagactgta
      361 ccagattttc tggttcagtt ccatcccata attgaccgac aatgatgggc aaggaagggg
      421 aaaaattcag gctcaccact gcaagcagag ggtcagaaat ggtttcatag ggagcacatc
      481 actgcttggc actaaatgca gggttaagca agcatcatct gtactttctt ctaatgccta
      541 ggttaaaagg gggataaaaa catcctcacc gcagcagggc aaagagaaca ttttaaaagc
      601 tggcatagct tcctcaagaa tcttccacag agacaagaaa atgcctggag gatttttggg
      661 agttggtctc taaccgcagt gcattactca aataaacaaa gc
//
LOCUS       KCLJ01003128             633 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 348400cal ultra-conserved element locus
            uce-2442, sequence.
ACCESSION   KCLJ01003128
VERSION     KCLJ01003128.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 633)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 633)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..633
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="348400cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>633
                     /note="ultra-conserved element locus uce-2442"
BASE COUNT          176 a          128 c          139 g          190 t
ORIGIN      
        1 gagatttaat gtgctctttg aaagcacttg tcatttcatt actgtttttc aggagtttgt
       61 ggagaatagt aagaaatcta tgaaagaagc tggccgggga ggtggagctg agggcagaga
      121 gctaaaacca atggtaggtg cagatgagga ggtggcgatc ctccaagagt ttcactttta
      181 cttcttctcc ctctttgtct ttactgactg cacttcttca ggagaagttt ttgttctctg
      241 tatcactcaa gatgttctgc tttttctgtt tgtgagcttg cctatcacct ggatggcaga
      301 gtttttgtca cagctgagac catctcctgt aaaagtaaga tgaaaggaac tgtctcatat
      361 gaaacaaatg caggcatgcc atgtggtata tgcagacagc cccagatgct gaacagtcta
      421 aaaataagat ggttctgaga tccctgagat gaacaatttt tgctcataca ttcactgcaa
      481 aagcctgaaa tgaagaacac tactgcgtgc atccattgtt ccaaagtaag accaggtttc
      541 aaagccctca ccaaattatc ttacacagtg ccaaggaatt ggatacagtg attcctttca
      601 acctgctcaa atgacatttc tcccagttgt ttg
//
LOCUS       KCLJ01003129             742 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 348511cal ultra-conserved element locus
            uce-5215, sequence.
ACCESSION   KCLJ01003129
VERSION     KCLJ01003129.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 742)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 742)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..742
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="348511cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>742
                     /note="ultra-conserved element locus uce-5215"
BASE COUNT          148 a          187 c          171 g          236 t
ORIGIN      
        1 gctttgagca gcgctgtttc agattggcct ttttatgttt gatataaaga atagttgttg
       61 gccaattcca tcttttcatc gctgctctcc aggcccgggt ccaagcggct tgtcagatgc
      121 tcattaactc cccctttggc tctttccagt gtgtctccta agctcattgt gccaagaact
      181 agcgcttctt tctctttaca tggctccctt tctctgctcc atcagggaga caaattactt
      241 tccaaaaggg atcgccaggg atggtttaat gagaatttct ccagcgctgg ccgtggaaat
      301 caatgtagtt aacattcggt gcacttaatt ggacttttct cttctgcctc cttcaaaaaa
      361 actctgaagc tatcctgtta atctctcatt tgtaatcaat tgtgttgact aaacaaaagt
      421 ctaggtcgtc ctttcttcct gtcccagaca atcctttgtt gcctctaaat gcctcattct
      481 tgagtgctcc tggtcgtgta gatgggtccg atttttgaca gttcattatt gcgcttttgt
      541 ccatttaatc tccctcgctg tgttttgcat gtgcatgcct taatgagctc cgttggcaat
      601 taacatgttt ctagcagcaa actggttgct cagacgtttg gagagcggag tgcagggaaa
      661 agggcaacgc agctgccttg gtcgcttccc ggtgcccggc gcggtgccgg gacgcacctg
      721 ggagccgccc ggtgccgggg aa
//
LOCUS       KCLJ01003130             734 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 348618cal ultra-conserved element locus
            uce-603, sequence.
ACCESSION   KCLJ01003130
VERSION     KCLJ01003130.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 734)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 734)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..734
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="348618cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>734
                     /note="ultra-conserved element locus uce-603"
BASE COUNT          200 a          153 c          177 g          204 t
ORIGIN      
        1 ttttgaaaat ggcacatctc agaggtattg ctttcaaaat ggtctcaggg tgtaaagaaa
       61 gcagtaataa cagcaccagg ctgtcctaat tttcccacca gtttttcaag gtttcagctg
      121 tctcagagac ttaaagtact ctcattaggt ctctgcagag gcttgctcgc ctgctccatc
      181 actctcccga gctgcctctc tctctccccc cccctcctgc cttgggagtg actgtgaaga
      241 tcatttgctg gtgtgattgg caggttagag cattcgatca gatgagttgc tcttagtgca
      301 ggtcaaaaag gctggttagc aggagctgtc gaaaaatgcc agcagcattc gaaatgggaa
      361 atgtcacgac ttcgaggcag ggggtgccac ctggaacaga aagcccccag ctcattagca
      421 agttacagga tgcaagctta actggaggga gcagaggagg aaagataata cccaataggg
      481 aaaattattg tgaagtggaa ttgatttcat gtataatttg tttatcacta gaggggacaa
      541 atgctgtcct cctgacatgt gcggaagagt gtggactatg aatgaagcaa tttagcataa
      601 tctccaggtt gagctctgga tttaaagaat gccaacttct ttcttcccag ctgtggaagt
      661 gatcaggtca tgttgtatta atttaacctg acatactctc aaatggttta tctgggcaat
      721 tttagcaatt taac
//
LOCUS       KCLJ01003131             569 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 348728cal ultra-conserved element locus
            uce-5576, sequence.
ACCESSION   KCLJ01003131
VERSION     KCLJ01003131.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 569)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 569)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..569
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="348728cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>569
                     /note="ultra-conserved element locus uce-5576"
BASE COUNT          169 a          111 c          118 g          171 t
ORIGIN      
        1 gtttattctt cttcaattta ccacttccat tgtgtattta ttaaggaaag gtggctgtta
       61 gcaatttcag caaccccatt gtgctcccat tattcaagaa acctaataat ccacatgaac
      121 taattctgac ttactgatgg tctgctttac taaatcaggg tgattttttc cagtgaataa
      181 tggacgatgc agtgtgccag taccttaatt aaagagagcc tctcttattc ttgatcttat
      241 tttaatttac agggtaatac tacaataata tcactaatgg aaggtacatt aaagggcata
      301 aagtagcatt aactgtatta aattatggca cttgtgttaa ttaactgctg aagcaagatg
      361 gtcctaacag ctagaaaggt caactaatgc ataaataaag tcttctggga tgggaggcta
      421 agaaagagca gacaggcctt gatgcagagg atcagaccct gtgccgcagc ctcaggaaga
      481 tttctttcac tgcagaggtg gcctgacctg tctgcaggcc ctacctgtgt tcaattccat
      541 gtgaaggaca gtcctggcag taagcagct
//
LOCUS       KCLJ01003132             497 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 348837cal ultra-conserved element locus
            uce-5377, sequence.
ACCESSION   KCLJ01003132
VERSION     KCLJ01003132.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 497)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 497)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..497
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="348837cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>497
                     /note="ultra-conserved element locus uce-5377"
BASE COUNT          130 a          110 c          133 g          124 t
ORIGIN      
        1 gtcccccctg cctctaagcc taactgctgc tccctccctt ctcccaaaaa aataaaaata
       61 ataatagggg taataagaga ggaggtaatg gaacgttctc caactgggca catgtcagaa
      121 gccattatat gtggtgcaga tttgcataat tcaagaagca tcaaattaaa tttgcataat
      181 tcctttgatt acacttgtta ttaaatgtaa gtgacattga tttacaaaat ggcccaatat
      241 aaggttaata gcaaatgtca ccttccagca gggtgaatag ggtgcgtgtg tggtggtggt
      301 ggtgacggag gagggggaga ggggggcctg gggaggaagg cgagcagaca attgatttct
      361 gctcctctct cctccttaaa gggctcaggt ctcctttgca gaggagccct cgaccctcag
      421 agggctgcac tgggctgggg acacagtgtc atcaggacac cctgccatgt ggcactggtg
      481 ccatggctct gctgcct
//
LOCUS       KCLJ01003133             665 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 348947cal ultra-conserved element locus
            uce-5677, sequence.
ACCESSION   KCLJ01003133
VERSION     KCLJ01003133.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 665)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 665)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..665
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="348947cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>665
                     /note="ultra-conserved element locus uce-5677"
BASE COUNT          201 a          142 c          122 g          200 t
ORIGIN      
        1 aatctatgca attttctgtt aataaaaaaa tgtgaaagaa actaaagctc ttcctcagaa
       61 atctagacat tagcatactc tccctaatac tttaatcccc atcattgttt ataatcgggc
      121 tacacacaag gttatgcaca atgctgactg atttatcata ttttttgttt taattgaaac
      181 ggcaacattt aggttccacc ttaacagtgc accttaaaag attatctcgg ttatttcaca
      241 ggcaccgagc cggcactaat agtccaaggc agatattgaa aagcagcaca gggccaggca
      301 gatctattag aaattcccat ccacacgcct catacatatt gatttctgac accaagcagc
      361 agtgaaagcc cccgtgggaa taatatattt agcagggttc gctgcgagga ggtcacagag
      421 tgcatacaga ttagctacag aggaccaagg cactagtgtt ggagccaaat gctagatttt
      481 atatcatttt aatctgaact tttataatcc ttttagttct tctttctctg gatggcagag
      541 gaaaggctcc tccgcatgta tcacgcatct tttttctttt ccttctttat tcctcctata
      601 aatgtgcaaa tgctgttgta atggggagga atgtaccctt agcattagca ggaataggca
      661 caaac
//
LOCUS       KCLJ01003134             418 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 349158cal ultra-conserved element locus
            uce-6437, sequence.
ACCESSION   KCLJ01003134
VERSION     KCLJ01003134.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 418)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 418)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..418
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="349158cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>418
                     /note="ultra-conserved element locus uce-6437"
BASE COUNT          124 a           77 c           94 g          123 t
ORIGIN      
        1 ttagtttcat tttattattt tttatgaact ggaggggcca ggatggggct aaaatttccc
       61 cttgaacatg atgtcaatat gttggcatgt ctccttttat taagatgcca tccaactgat
      121 aacaagtcct gctgtgtttt accaacataa aaaattagac tggagaccag ggagcggcag
      181 gtggcttttg gcaccaagaa ataatcacac ttgatgtgga aagtaaagta aaaggagcca
      241 tctgttcact gcaggaggac gtgaaaaatc acattaacat attgtcacta acatcatgaa
      301 atacacagtt aataataaat ttagttatca tggcaagctg cattgggtgc ttccttagaa
      361 caggtatcgt gtggaagcac ccttgttgag ctctgtcctg gctgttgtgg cagcccga
//
LOCUS       KCLJ01003135             599 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 349265cal ultra-conserved element locus
            uce-4608, sequence.
ACCESSION   KCLJ01003135
VERSION     KCLJ01003135.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 599)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 599)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..599
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="349265cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>599
                     /note="ultra-conserved element locus uce-4608"
BASE COUNT          174 a          124 c          118 g          183 t
ORIGIN      
        1 ttcaaatgac ctttcaaata aaataaccag gaggtctagc acattatgtc actaagtcac
       61 acagtaagag ggaccatcaa agaatggtgg gaattatcac agcagcttgc tccttgttag
      121 aagcatttac ctcatgaccc tttcatttgc ctactgccac tttagtttaa gagtgacaac
      181 actgtatagc actctgcact ttcctcctcc tcgtcctttc ccttagcacc agatgccttt
      241 gtaaagcagc ctggtgaagg agtgaacaaa accttgtggg ataagtctga cactggaagt
      301 taatgattat cagtcgaaac aaaacacttg tttacatgtt gtagtcatta gaggttccag
      361 tcagtcatac ctcggctggg attcctgcca aatgttttga gggttctttc acaagctgtg
      421 cagttttgta aatacaaaag cactcttatt aagccttttt agtattagac tgtgcaatta
      481 agactacggg taattagatt cctttattgg gagtagaatg gtccaagata ctttcttagc
      541 cacaggatag catcgtatct ctatttgggt gttccattac agatcaatga ctaagagaa
//
LOCUS       KCLJ01003136             746 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 349374cal ultra-conserved element locus
            uce-2090, sequence.
ACCESSION   KCLJ01003136
VERSION     KCLJ01003136.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 746)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 746)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..746
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="349374cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>746
                     /note="ultra-conserved element locus uce-2090"
BASE COUNT          218 a          153 c          156 g          219 t
ORIGIN      
        1 agctgaaagg actcttattc aaagaatgat cttctttttt agactgtatt gagttgggac
       61 tgattttgat agccagtttc agtcaagaat cataaagtta ttgcacattt aagaccgtca
      121 gtatgagaat cattctctgt ctctctccct actgttcttt cccctccctt tctctctctc
      181 atcatttcac aggactgcaa ggttacagaa aggtctaatc aattgtcaaa ctctccttta
      241 tctctgagaa ggtggtaaaa aaatctaact gccctgctgt agggggttct tctgactaca
      301 cagcaccctt tttcacatac aatgctacca tgattaatgt cctcccacct cagaccttgt
      361 taaaacctgt tctttaaagc aggctggtgc accacagtga gagcaagagc aaggttgcat
      421 aaatcaacgt gttctcacag cccccaggat atccattata gatgccagct ggatgactgg
      481 aagatagaga aaaatgaata ttgtatcctg tggccttttg cctctaatga ccacttttca
      541 acatttttga aggcatgatt aaattttgat aactggggaa gtcactctga gcaggctgaa
      601 atagagataa attgactgag ggtctgacat cccagtggag agcaggcaac taattagtgt
      661 gtgaatctca ctctgaaaga gatgtaaaag ggaggctagt ttaatcagag gagctgctga
      721 ggtacaggaa tagtcaggga taatag
//
LOCUS       KCLJ01003137             373 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 349474cal ultra-conserved element locus
            uce-6771, sequence.
ACCESSION   KCLJ01003137
VERSION     KCLJ01003137.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 373)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 373)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..373
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="349474cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>373
                     /note="ultra-conserved element locus uce-6771"
BASE COUNT          106 a           91 c           80 g           96 t
ORIGIN      
        1 taagaccaag tagcaggtat gcccttgtgt ccacagaggg aggcaaggag aggccagaca
       61 ctctctttct cctccctccc tccccactgc tggtggctcc taaaaggatt aattagaaag
      121 atgtgagcag gggttgggac gtcaaaaaac aatcgtcact ttcatatctg acccctatca
      181 ccagctgcag aattaacaaa ttgaatgtcg tcagcaaaca ggagttgcag atgatatgaa
      241 gttcattact agcagcacag ggcttgtttt caaagcccag tttaaacaac tcttgctgat
      301 taaattcctt gctggggctc ctgccagaca catttagaaa atacggatgt ctaacaactc
      361 tgtctttctc tgc
//
LOCUS       KCLJ01003138             524 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 349572cal ultra-conserved element locus
            uce-2780, sequence.
ACCESSION   KCLJ01003138
VERSION     KCLJ01003138.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 524)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 524)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..524
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="349572cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>524
                     /note="ultra-conserved element locus uce-2780"
BASE COUNT          163 a          106 c           80 g          175 t
ORIGIN      
        1 tgtgtgatga caaggagggc atttacaaaa cagagtccaa atgaaaagct gacatagctt
       61 tttagattat atctcattct tttttctacc ttctgtatag cctttctttt atagcacagt
      121 tgaatcccta aataccccac tactttgtat tgtcaggtca cctcttaggt tagcctgaga
      181 aagcctgaga aaagttccac aggaaagatc cactatttaa cggaattcaa tctgtcccaa
      241 tagatttgaa tcactaacat aaatgtatga atgtagatta tatctctgta atgaggcctg
      301 aatcattctc agttacttca aaggcctgaa attcaacctt cctttttagc agcaacaatc
      361 agaccttaat gggtttcttt attaattgtt ccattgctaa gcttgaaaag cagctacctt
      421 cagtacaagt cctagactag aaattacctg ctgctcaaaa ccagtaattt tgttttgcct
      481 tttaaattct gaaaaatatc tcccatactg cagttttata aatg
//
LOCUS       KCLJ01003139             623 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 349680cal ultra-conserved element locus
            uce-2415, sequence.
ACCESSION   KCLJ01003139
VERSION     KCLJ01003139.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 623)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 623)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..623
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="349680cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>623
                     /note="ultra-conserved element locus uce-2415"
BASE COUNT          166 a          165 c          130 g          162 t
ORIGIN      
        1 tggcagagtg cacagtgttc cttgatagct gatttacatc accccttatt tttagaggca
       61 ctggagtggc agaggctgtg tgacaatgac gtctgctgat caaagtgaca gagatgagtc
      121 agcactgagt gcacagatac cagaccttta ggaggcatcc tgagatggag caggaggatc
      181 cttattctca ggctctggag gaggagctgg cacattttcc tctttctttt gtgcagccaa
      241 aaattcatga attgccctct ctatctgagg cctgaagatg tggtttagtt ttggatccac
      301 cacctgagaa ataattctgt ccactccagc ttccagcatt cctgaccttg aacaaagaca
      361 aagaagtcat tcagctcctc tgaaaaactt ctccccaatc tcctccagaa actctccaga
      421 gccctcctgt caactgcaat tagcattaac atggtgagaa ctgctgccta ctcaggagat
      481 ccttaacagg gacttgtttc actcactctc cctgctccct acagaattaa caactcccat
      541 ctgctctccc aggtacttaa atgacacctt ggccaagagc cacttttaac agagctcccg
      601 tggaaaccag gtcaacatga aag
//
LOCUS       KCLJ01003140             481 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 349790cal ultra-conserved element locus
            uce-5568, sequence.
ACCESSION   KCLJ01003140
VERSION     KCLJ01003140.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 481)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 481)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..481
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="349790cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>481
                     /note="ultra-conserved element locus uce-5568"
BASE COUNT           95 a          175 c          133 g           78 t
ORIGIN      
        1 gtccccgccg tgcctccctc gccccgcggc tctgcagacc gtaccccaag cagaaatgga
       61 cccggcgcgg gggagggaaa aaaaggggat gccttcgcac ggtctgatca tcaccataaa
      121 gagttaaaga gagagtgaaa tggctaacgt acacacaccc cgctccatac cggagaagag
      181 tctcccagct gaggtttatg ctctgtgagg accaggctga aactgaccgc ccccacggcc
      241 acgctggaca cccctaaccc tatctccagc acggagagca ccaggaggct cccgatgatc
      301 tggctgctgg tgcacatcct ccctcggtca tccttccttc ccgatcagcc ggggaaaccg
      361 cgcatcctcc tcctcctcct cgggcgctcc cgcggcccta agtcgccccc aaacttttct
      421 tccttcgcag gcagccgggg cggagcggcg catccgcggc cggcgggcgc taccgagggt
      481 c
//
LOCUS       KCLJ01003141             658 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 349898cal ultra-conserved element locus
            uce-4976, sequence.
ACCESSION   KCLJ01003141
VERSION     KCLJ01003141.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 658)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 658)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..658
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="349898cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>658
                     /note="ultra-conserved element locus uce-4976"
BASE COUNT          218 a          151 c          158 g          131 t
ORIGIN      
        1 agtcccctct cttacctgtg tgcaagccat tatgtgaatg atgtatgatg gggccaggag
       61 tcaggaggga gactgggctg agtggtcaca ttattaattt acttttctga tttgtgtttc
      121 cttccttctg ctcctcctac aacacttctg gcaattcagg tttctaaagt caacggggtc
      181 actcgaatgt catctccgag tgcaaatgca gccagtgcca aaaagatgag agaagtcaga
      241 ccttcaccgt ccaaaactgt gaagtacact gcaacagtga caaagggaac tgtcacatac
      301 accaaagcca agaaagaact ggtcaaggaa accaaactaa atcaccacaa acccagttca
      361 cctgtcaacc acacaatctc agggaaaata gaaagtagca atgcaaaaac ccgcaaacag
      421 gtgctatccc ttggagcatc caagtctaac aataccgctg ttaatggtgt aaaagtcaat
      481 ggcaagttga accaaaagac atgcactaag gaggtgggga gacagttaag ggaggggctg
      541 cgcaactcga agaggaggct ggaagagacg aatcacatgg acaaaataca gtcgcccacc
      601 aagagaatga aaggggccgt caacttggca gaagctgcca gcaaaaaggc agcagtag
//
LOCUS       KCLJ01003142             592 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 350006cal ultra-conserved element locus
            uce-3497, sequence.
ACCESSION   KCLJ01003142
VERSION     KCLJ01003142.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 592)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 592)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..592
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="350006cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>592
                     /note="ultra-conserved element locus uce-3497"
BASE COUNT          196 a           99 c          117 g          180 t
ORIGIN      
        1 attgaagaaa agcaggcaag aaaagatggt tatgtattag tacaatagct cagaggcttt
       61 tcattttagg atacaaagag ggagtagaga atgctgtttt ctttttaaaa accttttaaa
      121 aatggtaact gcatcctgct cttgtagatg tattacttat gacatcccag ttttcatccg
      181 ttcatgattt tacattagag ttaaatctct gcagcttgaa tctcacggct gagttagcca
      241 gagcccataa aatattgaaa cctttagagc agcagccagc caggttgaga gaagttcatg
      301 tccaaagctg agctttagat tctgagacat cccaattgga gtgtagtaca gaaaaaagca
      361 ctgataaaat tttcataaaa atgagctaag gatattgcta gcatgcttcc cagcatctat
      421 atgaaaactt aatctgagct aatggaaagg atatgaaagc ctttctcaat tcaaacacag
      481 tcagtgcata attcataaat tattgtcaga gaagtgattc tgctctgaga tttattctct
      541 tttggataga agcaactgga ggaaaaactg ggtctttttg acctttaatg cc
//
LOCUS       KCLJ01003143             583 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 350114cal ultra-conserved element locus
            uce-5186, sequence.
ACCESSION   KCLJ01003143
VERSION     KCLJ01003143.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 583)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 583)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..583
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="350114cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>583
                     /note="ultra-conserved element locus uce-5186"
BASE COUNT          203 a          117 c          110 g          153 t
ORIGIN      
        1 acacataccc acagaagagg tcaaatattt ggaaattcaa aatagtgaga gtaaaagcaa
       61 caaggccacc atgtagggaa agcagaagac ttcccatggc aagtactcac cagtgtagca
      121 tattttatac ctgcaacatg ctctattctc catggagggc ttttcaacac caaaatgggg
      181 gacaaggtga agagaaggga gtttaaagtg caagctgcac tctctgctcc aaaaagcaca
      241 ctatgctgat tcaaaaaaaa cattttcaaa aatgcctgtg ggtaaatttg agctgcccac
      301 agctccccag gggcagtcaa acttgctgtc gagccattta tgtggatttc agtcaaattc
      361 taattttagt gttcattaaa catgggtaat tcccaagcca atccctgcat cactctacaa
      421 tataggtcat cctagcttag aaaacatata cagacatcaa agtgcaacca tttcattata
      481 agtattaact ttataaataa ttatgaactt cttaattcct acaagatgct gtataatcac
      541 aaatgcctta caataggaag agggtgggag gttatggtat ata
//
LOCUS       KCLJ01003144             691 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 350222cal ultra-conserved element locus
            uce-4287, sequence.
ACCESSION   KCLJ01003144
VERSION     KCLJ01003144.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 691)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 691)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..691
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="350222cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>691
                     /note="ultra-conserved element locus uce-4287"
BASE COUNT          229 a          114 c          105 g          243 t
ORIGIN      
        1 aaaaatgctg tgcagagtac atattttgtg tacgcatgtg aaaaacgcta agaattattt
       61 agcaactgta aagactgttc acaaaatgcc tttgatttat tgctgtatat actacagatc
      121 catatcacat attcctacat tattttattc aaaaacttgt atgaaccatg agttggtatg
      181 ttgtagaata ctgaaaaggc attaatcaac ccaaataaac aagtacatag atctatctaa
      241 caactatgaa gtagttaata aatttttagc aattttatta tagaataaag gtctaaaaga
      301 gtagtgctta attatctgga ctcctctgtg ctgggctgtc ttttgattgt attaatgaag
      361 cagctggccc attgtttctc tttaattcct ctattgtttt aagaatatgt cacagctctt
      421 tattctttta tcaggtgctg tgcaggagga ttcacacaat aactcatatt cctactgtat
      481 ttgccaatgc acaaagaaac ctccaaagca tttttcaaag aaggggcaca cataatttat
      541 aagttctgtt ccttgtacca ctctactgtc aaaaatttca acagtattgg atttgaatga
      601 attataattt ttttattaaa caatgtgtcc acatatagat atatgtactt tgttcatgtc
      661 aaaaattaga gatctgccca ataacttgtg c
//
LOCUS       KCLJ01003145             595 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 350330cal ultra-conserved element locus
            uce-6137, sequence.
ACCESSION   KCLJ01003145
VERSION     KCLJ01003145.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 595)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 595)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..595
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="350330cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>595
                     /note="ultra-conserved element locus uce-6137"
BASE COUNT          166 a          143 c          134 g          152 t
ORIGIN      
        1 ctccagctgc cttcggcatc tcctaataac ttggcatatt cacttaatac aggccagctc
       61 cttccaagtc gttagcggcg gcagccggaa cgctgacctg gtttgcttgc caagacagag
      121 caaagagaaa ccttcacata atcatttcca aacattaaaa tggctccatt gtcattatag
      181 ctgagagatt gaattcgcct catcaaagcg gcgtatgaca ggtgactcaa taggctggtg
      241 ccaagcgcgg aggcaggaga ttagcagggc actgatatca ttatttccgc ctatcacaga
      301 ttcggcaggg aggcaattgt aatttctggg cttattagtc tgcattcgca ggaaaaaacc
      361 tggtgataaa cctcagtgtg acagccaggc atttgtgcag caagtgctgt cacagtgaca
      421 cttggaaaat gccaatgtgg atacgttctc ctaatccccc ctaatggagg ttaaagcctg
      481 gcacaaaggc actcttatca ctgatcggga cactaataac atttgcattt ttaagttaaa
      541 tatagtaagt aaagagtaag tctcctcctc gcggcttcgc caattaactc ggcct
//
LOCUS       KCLJ01003146             747 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 350439cal ultra-conserved element locus
            uce-812, sequence.
ACCESSION   KCLJ01003146
VERSION     KCLJ01003146.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 747)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 747)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..747
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="350439cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>747
                     /note="ultra-conserved element locus uce-812"
BASE COUNT          234 a          141 c          133 g          239 t
ORIGIN      
        1 gggtgctgcc agcttgtgaa tttttgtacc tgcatgcaca atgtagcacc atttaaatag
       61 gcatttccca atgaaaacaa gaaatatacc atggagcatc taatctccaa ggttcctctt
      121 agcagttctg tgatagaccc aagaccctgc aatgcaatta ccatagcatc gtcttgatgt
      181 ataggcttga cacagtaaag tagagtacac aagcaccatg tggctcaaat tctgaatttt
      241 atttgcctat cggttgagct acatgctcgc ttcattgagc atgacaacct agttttaagt
      301 gtcatttaat tttcattttg aaatataatt acaaagtgtt cactgtaaga tatcactcgt
      361 ctgcaaatgt gtcaagatta atttgtgcta gcttattcac aagtgtcaat agttaattac
      421 tgtgtcatct ctagatggct aaatgacatt ctaacttctg attttttaca gtgttccttt
      481 atgttatttt ccattagggg atgagtccat attcctacat gtgggcaaat acccaagcac
      541 ataaaatacc agacgtcaca actcattaaa atcaacagag catacattgc tgtatatatc
      601 ctataaaata tatttaactg aaaagataat tctagtaata atgtcagatt cctaaaaacc
      661 acacattaat ttggatctgt cggatctaat gcctagggga ctagtgcatg ggatcattgt
      721 tgtgagaaga ggacagcttg ttggaca
//
LOCUS       KCLJ01003147             702 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 350552cal ultra-conserved element locus
            uce-5394, sequence.
ACCESSION   KCLJ01003147
VERSION     KCLJ01003147.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 702)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 702)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..702
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="350552cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>702
                     /note="ultra-conserved element locus uce-5394"
BASE COUNT          198 a          176 c          144 g          184 t
ORIGIN      
        1 atgcctggta aagcctccta tctgaacagg acatgatagg atcatcacta aagcaggaat
       61 acatgaactg aggactgaga atacttacag gagcttgttg caaaagcaaa cgcagggctc
      121 cttttttcct tcccaaaagt cctgtttgtc ttcagactcc caagcatgtt gaaccacacc
      181 atacccctgc accctccctc ctccaccgta gatatacaag gctaagttga tgagctgttc
      241 agcttagtgt gaaatgtgtt acattttccc cccagctgct tcctgattgc agtatttact
      301 tttaatctcc tctgcctcaa tgcccgataa aaactttgtc acattagatg gtgacagatg
      361 ggaaagagaa gggggggatc actgcaaggg aacgtcctgg cttcccaata atttttcaca
      421 acgccaatta tgtccttcag tgcttcccgg catgtgcacc catgtcagca aagaaggaaa
      481 tagaaaggca taaataaaga caaaaccagg cactgcgtgg ctttaataac atttctcatt
      541 tgggtgaaat attgttggat tctctcctgt gctggaaaac acacacacac acagagacac
      601 agatgcacag agttcacagc tgctttcctc atgcatgggt actgccatcc tcacaagcag
      661 ctcgcattgt gatcagggtg cagtttctcc tgctttctga aa
//
LOCUS       KCLJ01003148             841 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 350662cal ultra-conserved element locus
            uce-6879, sequence.
ACCESSION   KCLJ01003148
VERSION     KCLJ01003148.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 841)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 841)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..841
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="350662cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>841
                     /note="ultra-conserved element locus uce-6879"
BASE COUNT          274 a          127 c          166 g          274 t
ORIGIN      
        1 taattgctat gctggattct ttttgaatca agttgggttt ctaccaagca atagtttgct
       61 gtatgtttgt atgtgtgcaa atgtgtgtaa tgtatatgca cataaagtgt atatttagta
      121 agtggatatg aataactgct gtgtcatgta aatgcagata attgcaatct ctcaaggaaa
      181 agtttgcagt agtatttgca gatattatat atattcctac ttctgtctga ggagtaaaga
      241 aatttctctg ctgaatagct gttagtatct attttacaag atttactcat tttcaggtac
      301 ctaatgtagc tgctagcatg catgcacgac aatacaattt atatggtaaa tggaaccaaa
      361 taatggcttc actgaatgtt atggctgcac tgaagggaaa tgtcacggta aatagctgcc
      421 aaattatgga tcatgccgaa gtgtcacaac tgcactaaag acaaatagca ctagaggcta
      481 ttgccactgt gacgcttttg agttatgaag aagaggagca gcctgatgtg agcctctttg
      541 tgtcctcatt atagcaaagg gttactggtg cagtgtacaa gaaaacctag tcctacgtgg
      601 tggctagtta ttaatctgtt cttttcgaat caacagctat agcaaaccag aagatctttt
      661 ccttgcttta tgaatacata taaacacata caaacaaaga aaaacctcca ggttttatga
      721 atgtaaatgt gtacgggaaa tgactagtaa tggaaaaatg ttgtaataaa ataatctaat
      781 caaagaatat tattaaattt aatatcatat gtgtctgaaa gctttagttg cttcttatgc
      841 a
//
LOCUS       KCLJ01003149             729 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 350775cal ultra-conserved element locus
            uce-1606, sequence.
ACCESSION   KCLJ01003149
VERSION     KCLJ01003149.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 729)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 729)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..729
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="350775cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>729
                     /note="ultra-conserved element locus uce-1606"
BASE COUNT          234 a          156 c          146 g          193 t
ORIGIN      
        1 aacatgtgcc agtcaatatt ggtacactgt gacccttgac gcctcctaag caaaactatt
       61 aagtccaaca ttttctcctg taagcactta tctgtaagga tggctaacat gtcctctaaa
      121 gcagatattg aaactgattg gacaataggt agataccaga caggggcctg ggggccgacc
      181 tctagaaata gggggagaaa atcttaatct gcaacacaat gcagctctct tgaaacccta
      241 tcattttcac ttcccatgtg tctgctgcct gactgtgaat ggatttgaaa aggaatggtt
      301 agtgctgaaa attggatcag agctaacatt ctctcatttt tatcagcagc tgccaaaggt
      361 catctgacat aatagctgat gaattcaagc ccagtggatt tcatttgcaa ttttcaattt
      421 actgaggcct ccaaacccca cagtgataaa agcttcccct atcgtggcct gtcacaaaca
      481 tcaagaaact gcacaaaccc acaagaaaga aataggagaa agctgtgcat catcacagtt
      541 acagataagg agaacaggaa gaaacagtat catgtagaaa ggtgtggagc ggcatgtgtg
      601 gttgagtttc taaatgccaa ttgtaatgaa aagactatga agagcaatca aataacttct
      661 acagaataac atcatggttc ccctgcttca gtttcaaaat tgccttctaa tctcttgctt
      721 gacatcctg
//
LOCUS       KCLJ01003150             640 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 350886cal ultra-conserved element locus
            uce-7620, sequence.
ACCESSION   KCLJ01003150
VERSION     KCLJ01003150.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 640)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 640)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..640
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="350886cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>640
                     /note="ultra-conserved element locus uce-7620"
BASE COUNT          199 a          116 c          126 g          199 t
ORIGIN      
        1 ttcattatta actgcctgaa gcatcacacc tctctcacct ttgctggaat gtctgaacat
       61 tagggtaaac aacacgctgc tgtcttatca taatgccgtt tgcttcactg cagcaagaac
      121 ttgtcagaaa cagattgtga tgttgacttc tcaatagggc ctaaattaga cttctataaa
      181 aagaatattg catatttatt tccacaataa cgccaaggaa aaacgttagt caaggagcaa
      241 gcaattgggt gaataaataa gcttgtcttt gttctcatca attaagttat tacatcagtt
      301 ggaaaaccag tgaattataa tacagatgtt taatgaaaca ctgctgtgcc tataagtcaa
      361 actcctattt tgtggtgtga ttttggctgc atagttttgt gtgtgttaaa ccgtatttat
      421 tagctgatac ccattattat tttgagcaag gtataattca gttgtcaggc tccagctctg
      481 ggaaggagat ttaatcagtg agagcccgct ctgctgctga gcataaaaca atgcgggttt
      541 catgaagcaa tcacaccagt gtgaaaaaat gggattaatt agtattgtac aagaacaggc
      601 agcatgctca ttaaaacctt gtgagctgcc tcttgataaa
//
LOCUS       KCLJ01003151             532 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 350995cal ultra-conserved element locus
            uce-6486, sequence.
ACCESSION   KCLJ01003151
VERSION     KCLJ01003151.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 532)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 532)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..532
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="350995cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>532
                     /note="ultra-conserved element locus uce-6486"
BASE COUNT          164 a           99 c           91 g          178 t
ORIGIN      
        1 atatttcatt atataagaga ggcagctata aaacctattt ggtggtcttt caatcactgc
       61 tacctgtggc ctatttatgt ggatggcatt catcagtatg gcaggaaata ttaagcaagt
      121 gctagacagt tattagctct cctcaagcag aagtcctcat accctctatt catataccat
      181 gggaaaaatt cacttggtat tttctttctt gcaactgttc tgctgttcat aatttgatgg
      241 aaaattgatt aatcacacat ttaactcaat gcaagatctt ctgcactgta ataaattatg
      301 gccattaatc aataagtaca aagtaattcc aggagtctgg agacatgctg atttctaata
      361 gaaaaacttg tgcttaggcc ttcttgccag tgaccacttc atctgaggta ttttgcacct
      421 gcctcaatcc aattagatga cataattaat gaatctcggt gcagttgata atttgttata
      481 caaaagaaag aatgttttgg cacatctatt aagtcctgat gcacaaatct tt
//
LOCUS       KCLJ01003152             678 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 351103cal ultra-conserved element locus
            uce-5880, sequence.
ACCESSION   KCLJ01003152
VERSION     KCLJ01003152.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 678)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 678)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..678
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="351103cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>678
                     /note="ultra-conserved element locus uce-5880"
BASE COUNT          232 a          134 c          126 g          186 t
ORIGIN      
        1 agagcaagta aaagcaggag agagacagag ggagcgagag gtaagaaact cataatggga
       61 tttttcatgt ggaacgatca ttttatctaa tacgtctgaa aatgtaatcc attactacta
      121 attaccatgc tggcattgaa atacaggatc acacttactc cagatccaga tagaggccca
      181 aatctctcca ttcattgttc cttccatccc tgctcacctc cctcccttcc aagaagaaat
      241 tcagcccttc ggacattagt gaagaagggc ccgaggtctc cctatcatcc taaagcagaa
      301 gctaaacaat attagccaat catttttgat agatgaagca tggaaattag ttccagagtt
      361 taactgataa ctgaaaccac acagttacat tccattatgg cagccttaat tgatgagctc
      421 attaagccca ttattagaga aattgatttc aaataggcac ttaaaactgg ctggcaaaag
      481 aaaaaggtga agagataccg tacaatgtga agaaagtaac taaaatacat aatgaagcaa
      541 gtaattttat aggtttgttt aatgaaagcc tcaagagcat attagttgct gtgtggattt
      601 taaacactca ttttatgtac taataaagct cccgtccatt atgggagttc tgaatgcctc
      661 caatctttaa tgcagctc
//
LOCUS       KCLJ01003153             683 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 351215cal ultra-conserved element locus
            uce-914, sequence.
ACCESSION   KCLJ01003153
VERSION     KCLJ01003153.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 683)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 683)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..683
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="351215cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>683
                     /note="ultra-conserved element locus uce-914"
BASE COUNT          233 a          112 c          130 g          208 t
ORIGIN      
        1 ggattgtgat ggcttcacat ttgttcaggt ctccaaggac ccgcaccaat aaatgtgaaa
       61 gagacaacag tagaatggca tactttccca tttccaccag gatgatactc taaattaagt
      121 ctaaccttaa atgtataatc tgtccttgaa agaatatagc atcttcaagc tcttggcatc
      181 ccttacgaga aaaaattggt tctaagggtc tctgatcttg tgttttagta aaatagaact
      241 gcacggctga ctgacagttc tgatctaaag catttacgtt taagttttga tctctctgct
      301 tttgattaaa actaatgagc tcatttaatt caaaatggga atctctgata agagaaataa
      361 ggttgatgtg attggattag aggggcaaat taaactctta gagcagaagt ttgtgcttat
      421 acagtgtatt aaaaagctgt tggcgtatta tggtgtgtta gatgatgaga aaaatttcat
      481 agtaattcat atttaatcag aagaaatgaa agtactaaat ataacatggc tctgcttttc
      541 cctcgagtga taaagagctg tacatttaaa atgacatcaa attcatgctc tctaaaacaa
      601 tcttaagaga cactctaaag aaaggggcac tgttgtcagt tatcacaaca gagctcaaat
      661 gtcacaaaca caagacaagt tga
//
LOCUS       KCLJ01003154             588 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 351321cal ultra-conserved element locus
            uce-1820, sequence.
ACCESSION   KCLJ01003154
VERSION     KCLJ01003154.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 588)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 588)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..588
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="351321cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>588
                     /note="ultra-conserved element locus uce-1820"
BASE COUNT          198 a           88 c          120 g          182 t
ORIGIN      
        1 tgtagaagat ttctaaatta acaggaaaca caatggcagg aggaaatgat gtaaacaaga
       61 taccattttg tcactctgat tttaaaatac aatggactgt ccagttacta tcgcacaata
      121 tagtggatag aataatagag cataagagta caacctttct agctaaggtc aaataattgt
      181 gattttctac agttaatgaa agtttaatat cctgtttcat taaaaattct cagaacgttg
      241 aacataagtc aacattccat ggagaagaag gtattatgca gtttgcatgt gtgcatatct
      301 gcatatcgga gcacaaaata ttgacatgat aattgcagtc aagcctgatt gaacagtggc
      361 ctctgggaat tcagctggtg ttgtaccaac tggatggctg ctcaggacac agtttgaaat
      421 gcaaggtgca agttagcact ttattcagca caggcaggca tcatttaaaa atccttaaac
      481 cctggtgatg tgcagatgtt aaagcagtct gttgtgaagt gctgataaaa atacttggta
      541 ttttagatga aaaatgtttg caaaattttt tttgtactat tttagtgt
//
LOCUS       KCLJ01003155             494 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 351431cal ultra-conserved element locus
            uce-5912, sequence.
ACCESSION   KCLJ01003155
VERSION     KCLJ01003155.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 494)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 494)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..494
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="351431cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>494
                     /note="ultra-conserved element locus uce-5912"
BASE COUNT          169 a           96 c           96 g          133 t
ORIGIN      
        1 taattctaga aacatttgca atcctaggtg taatattttg aatgtttcag aaagtactat
       61 catctgtcag tagcatggga agaagaaata gacctcgcac ttctagtaat gaagtatcta
      121 gtacttggca ttctttttaa cagacttttt ctatttaata aaaatgcagc tgcaacagca
      181 ccaccaaact tctcacaacg actacagagc atgactgcaa gacaaggaag tcaagttcga
      241 cttgacgtga gagtgactgg aatccctaca cctgtggtga agttctatcg ggatggagta
      301 gaaattaaaa gttcccccga ttttaaaatt ttacaagaag gagaccttta cagcttaata
      361 attgcagaag catatcctga agactccggc acctattccg taaatgccac aaatagtgtg
      421 ggacgtgcta cttcaacagc tgaattgcta attcaaggta acaaaaatca gagaataatg
      481 gtgcaatagg cacc
//
LOCUS       KCLJ01003156             689 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 351537cal ultra-conserved element locus
            uce-1438, sequence.
ACCESSION   KCLJ01003156
VERSION     KCLJ01003156.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 689)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 689)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..689
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="351537cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>689
                     /note="ultra-conserved element locus uce-1438"
BASE COUNT          228 a           78 c          123 g          260 t
ORIGIN      
        1 agattgatct tagattgtta atgttctgtt gttcactcct ttgaattcag ttctaaagga
       61 attctggtac gtggtgaagc agtaaataaa ataattgtat ttttgtggtg ctttttatta
      121 atcatatggg ctcaagtcca gcaaagtatt gtgaatatgc atgactttaa acatgttttc
      181 attattttgc tggatcagca ttgtgatttc aatgttattt aatactgaaa acaaatttta
      241 aactggcaat taagaaaact atgttcattt tgaagatttt ggtataattt atctgttaga
      301 gtagggaggc cttacagact gacttcactt aaagaggatg tgtcacttat tgtcagcgtg
      361 gtatggactt tatttgctta aataccttca tttgtaaagt atgtctcact tgaaattgct
      421 ttgtatacat tttgtaaaaa tatttataaa atgttttgta aaaaaaaaag tataacaaat
      481 tgcagtttat tttgttatgt tggataaata ctgttaaaag acacaagtca gtaaatatat
      541 tgttaatcca tggataggaa atgtttagtt ggagattaca aattgaaaca accattgcaa
      601 tacagccaaa gatttgggaa aaaatgtcta tctgtggttt aaccaagttg aatatttaca
      661 tttccaaaag atgattggtg tcagtttta
//
LOCUS       KCLJ01003157             424 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 351644cal ultra-conserved element locus
            uce-3782, sequence.
ACCESSION   KCLJ01003157
VERSION     KCLJ01003157.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 424)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 424)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..424
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="351644cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>424
                     /note="ultra-conserved element locus uce-3782"
BASE COUNT          142 a           49 c          102 g          131 t
ORIGIN      
        1 gttgccagat gtacaaaatg gctaatgtgt tgtataaaat gattttgggt ggcagaaact
       61 ggataggaag ccaagaatac tgcaccaaca tttgagcttt tctgcgagag gcgttgccag
      121 ccttgggagg gagcactgga taatttatag gttaacattt tctttttatg tgaatagcat
      181 tttttctcat ttatagttaa ttaggttaag catgcatggg gagtgaggga ggaaagactt
      241 tcagagagaa tctaaaagat tagtaatttg aatgaagtaa aagaatctgc taaaggatgt
      301 agctctggaa ttaaatatgt tgctataaca agtgtaagta tcagatagga attttaaagg
      361 ttcttacatt aattatagca gcagcataaa aagaggtaga gcatatttac agatttggct
      421 catg
//
LOCUS       KCLJ01003158             442 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 351745cal ultra-conserved element locus
            uce-915, sequence.
ACCESSION   KCLJ01003158
VERSION     KCLJ01003158.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 442)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 442)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..442
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="351745cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>442
                     /note="ultra-conserved element locus uce-915"
BASE COUNT          162 a           71 c           75 g          134 t
ORIGIN      
        1 caacaaaagt ttctagtata tcatgtgatc aatagataca agtaccttca ttttttaaat
       61 tagtccacgg ctattttcct tttactgttg tataaacagg gaattgaagg gtaaaatagt
      121 taaaacttaa tgctatagtg ctaatgtggc ttttaaatca cgtcagcagc aatcactgca
      181 ttataattaa caatttattg aaccagcaat aaaatgaaca tcacattact tcttaaagca
      241 gcagaataaa atggctaata aatagcataa gccagacaaa ttgcagagta atagttaaga
      301 tttatagtgt gcagaaagat ggatgtgcta ttagtaggag ctccaatact tgacaaaatt
      361 cagacatagt taccaggcat gtcagagttc acaagtctaa gtggtttatc caaatttcag
      421 ctcgctggga aatactcatt ac
//
LOCUS       KCLJ01003159             656 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 351851cal ultra-conserved element locus
            uce-6393, sequence.
ACCESSION   KCLJ01003159
VERSION     KCLJ01003159.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 656)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 656)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..656
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="351851cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>656
                     /note="ultra-conserved element locus uce-6393"
BASE COUNT          132 a          150 c          159 g          215 t
ORIGIN      
        1 ttttgttttc tttgtgggta aatgagccac aagtccctgt gggggaggca cagtgcactg
       61 gtgatgctgg gctctctgca gggggtggaa ggaagcaccg ggtgatgccc tggcccacac
      121 caggagcgcg tccgccccgg tgctgctccg gtgtttggtg gtctttaatt tggcattaca
      181 tactcggggc ttgtctgcag ctcgtatgat tcaaagttct ccatggggtc taatgtacaa
      241 ggcctggcct gttttcatta ggtttcctga gctctcctcc cttctcccca gtgttgccgc
      301 acaaagacac ttttgtcagg ctatgttgga ctctcctcaa aatccaagca ctttcaggaa
      361 aggacttgga agtctatctt ctcagtttcc atatcccttt gccctctgct ctggcatttg
      421 gtttgattgg ttgtagagtt gtgttgatct gtctgtgctg gagtctatct tgcgtgtatt
      481 gcaaatcgtg caagccagtt ctctgaatta ttgcacattg taaagtatta actccttcag
      541 tcctcgttta ggtgttagga ccaaaatcat gataggaatg ttaaaggagt attattatat
      601 tttatgttca ctgctacaag tttagtaaga aatttaatcc cccctctctt gctcac
//
LOCUS       KCLJ01003160             606 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 351958cal ultra-conserved element locus
            uce-4872, sequence.
ACCESSION   KCLJ01003160
VERSION     KCLJ01003160.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 606)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 606)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..606
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="351958cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>606
                     /note="ultra-conserved element locus uce-4872"
BASE COUNT          177 a          110 c          104 g          215 t
ORIGIN      
        1 acatttggga catttaacat atcaagctca aataaaaatg acacgcagat cgttcacttc
       61 tgaagctgcc ttgtgttcag ttattggaac actccatctc tgtggtttcc gaaatattat
      121 aagtatatat tccagattaa actttctatt ttcctcaagg tagtgttgct tttcagtcct
      181 caatggcttg gtttttacct aaagaatcag gtcctatcag caaaatcaaa ggcgattaca
      241 cagctcagta gtcatttagg atttctgtgg ctcaattaag catgtatagc atgccacagc
      301 cactgagact ctgtttattc agtgcaagtg ctctgtaatt tatttaaaat aatccatctt
      361 taacaaataa agaggccatt gactggccat tgctgcaggc atccatttca atgctgcctt
      421 cttgatggtc tgttttgctg gtttaagtta aatacctgac aaaagtgatt cagtttttgg
      481 gaaataagat ttgtatgcat aatgtttatt ttattttaca ccagtaatca gtttgaacat
      541 ctttttaaca gattgaccat taaaaatgat taatgctttt cattctgata gccacaggtt
      601 gtgatt
//
LOCUS       KCLJ01003161             778 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 352069cal ultra-conserved element locus
            uce-301, sequence.
ACCESSION   KCLJ01003161
VERSION     KCLJ01003161.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 778)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 778)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..778
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="352069cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>778
                     /note="ultra-conserved element locus uce-301"
BASE COUNT          245 a          125 c          141 g          267 t
ORIGIN      
        1 ttcacaccaa atatcattaa gctgctagta gctgaaaatc ttgtgtgtga gaacagaaga
       61 taccccatca gtgaaggcat ttttgtttaa taacaacttt gatccttctt ctgttggcaa
      121 tggtcattga gaaatcctga cataaagaag gtatctgcaa gataaagttc tacaagggat
      181 gattagcagc acttaagttt tctttctgtt gaaaggaaga atccctgatt gaacagtgca
      241 ttgaatgata tgacaagcaa gtacttgatc cctgtccagc tggaaaggaa ttgtattcat
      301 cagcagcttt ttagctaagg atgtctttat attttcactc tttgtttgag tctctccaga
      361 tcctcccttt acttcatgtc agcactatat agtaggtatg ccaagtggtt ttgaaattta
      421 aattacagtc tctttttcag atgttattgg aaagaacatg taatttataa ccacgtgtta
      481 ggagtacagg atgttcatgg ttcactgcca attcttcttt tgtaaagtta ataaaacttt
      541 cataaaacac ttatacactt gtatatttca tggtaaagat tatctcatag gctaatgtaa
      601 agatttatta aaaacatttt tttgttaaga ggagtgtcaa tagtttgcag ctgagtgtaa
      661 ttttgaattc ccagtagatg acagtctgac tgaaaatgac actaacagct ttgttgattt
      721 agcactaaaa ataaaggatt ctttcaaatg atataaagct ctaataccct gagtgtgc
//
LOCUS       KCLJ01003162             468 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 352177cal ultra-conserved element locus
            uce-2414, sequence.
ACCESSION   KCLJ01003162
VERSION     KCLJ01003162.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 468)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 468)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..468
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="352177cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>468
                     /note="ultra-conserved element locus uce-2414"
BASE COUNT          158 a           64 c           78 g          168 t
ORIGIN      
        1 tttgaaacat ttttataaca tccattttac tgtaaacaat tcattaaaat gacttgctaa
       61 gtcttaggca agtggatttt tgaaggttgc tcattttact tatccatcca aagtcaattt
      121 gagtatgaat atataacatt ttactcataa tagcaaacaa cttcagagaa gagacattta
      181 ttctggaggc agagattcaa actagacagc aatgatgcat tacaaatata taattatttg
      241 cactaatatt tgagcaggtg gaatggatta gtacatggtc aacattgcac tgctgataac
      301 atgtattttt ctatattaat atgtactgtg caacatgtat taaaattgtc aataattcat
      361 tttaacagag atagcaatat ttatattgct gtgttctaca gacagcagag tgaattgtta
      421 aaaagctggg ctagatttgt ttgtttccca gcatgtgtgg ttttaatt
//
LOCUS       KCLJ01003163             481 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 352284cal ultra-conserved element locus
            uce-6315, sequence.
ACCESSION   KCLJ01003163
VERSION     KCLJ01003163.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 481)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 481)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..481
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="352284cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>481
                     /note="ultra-conserved element locus uce-6315"
BASE COUNT          165 a           85 c           93 g          138 t
ORIGIN      
        1 aggtattaaa ccctctgggg aatgcaggca cagaggtaat aaacatattc gtttcattac
       61 aacatcttaa aaaatgtaaa aattctaaaa aaccaactgt aagctgacct gcagccaaag
      121 tacacattaa ttatacagct taagtcaggc ggatgctcaa ggaaaagaga tataatgtta
      181 cacccagctg gatactttgt agttagcaca aatgtaatat aaagcgtacc agagtttgtc
      241 aagtgtctgt ctggattttc agttttcatt agtactataa ttaaaaccac attttcagct
      301 atattaccta taacaagaaa ggaatgagaa atgaggttgt caaggtcagt ctctttctgc
      361 tctttatcct gagtatctgc aggccacaag ctgttgaatt tggtgtaaac cagagtaata
      421 ggatggaatg tcacgttaca aacctttgtg gttgcaaaga caaactgatg aggtcacttc
      481 c
//
LOCUS       KCLJ01003164             395 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 352389cal ultra-conserved element locus
            uce-7045, sequence.
ACCESSION   KCLJ01003164
VERSION     KCLJ01003164.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 395)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 395)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..395
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="352389cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>395
                     /note="ultra-conserved element locus uce-7045"
BASE COUNT          122 a           86 c           69 g          118 t
ORIGIN      
        1 aattacagtt ctctgcttta attgaaatgc tgctatgaaa tccttagttt caaattctta
       61 tcattataca gttaaaaaca tccacaattt atttattggc tgctaacact acctggacag
      121 agggcagtgt tattgcaaac ccttgattct cttaaagggc cgctgcagtg tgtcccgtaa
      181 ggtgatacac aagttctggt tcgcacctgc gacccttgac cacaagtaac tgaacacgta
      241 ctccactggg cccactcttc aacaccagat tcacctgtat tcaagacatg aatatagaca
      301 taagtattaa tgacacactg aagctcatta tcgtccgctc ttataaataa atatttaaag
      361 gtttatggag taaagcagct gtgaaaatgt gcgat
//
LOCUS       KCLJ01003165             416 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 352499cal ultra-conserved element locus
            uce-4020, sequence.
ACCESSION   KCLJ01003165
VERSION     KCLJ01003165.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 416)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 416)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..416
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="352499cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>416
                     /note="ultra-conserved element locus uce-4020"
BASE COUNT          142 a           82 c           84 g          108 t
ORIGIN      
        1 gagagcagag caagacctcc agaaaataaa cagggtgtac agtttcaaag gctacagaca
       61 cagacatttc attgttcaag ccaattatca gtggaaaata ataacaacag atggattcag
      121 agtcactgac ttttcatatg cacttcatct ctgcacaaca gatgatgaaa tgcgagagct
      181 atctcggaaa ggcaaaacat ctttcagtaa aagaactcta tactccagat ggggaccttc
      241 taaggcagct gattatcttc ttatagtgtt gtaagataga cttactaaaa catttccaga
      301 actgatcaga ttggatgagc acaatggcag cattatgagg agtaagttgc tccagtctca
      361 gacttgttac tggactactc agagatttca atgggctcat tccaaatcaa gtactg
//
LOCUS       KCLJ01003166             602 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 352609cal ultra-conserved element locus
            uce-1265, sequence.
ACCESSION   KCLJ01003166
VERSION     KCLJ01003166.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 602)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 602)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..602
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="352609cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>602
                     /note="ultra-conserved element locus uce-1265"
BASE COUNT          202 a          107 c          101 g          192 t
ORIGIN      
        1 caaaatttaa attgtcttcc gagcatatcc gatcacattt acatttagtg tccaaaacaa
       61 gttgattgac accagtgcca gcactacaac gtcatacagc aacttcatgg tattctttga
      121 cagttctctc tgttccaccg aaaattacaa aaggttctgc agagctctcc ttagcaagct
      181 gaagcttact agtcatttgt ggatgcgcat aaaagctgct tatagcacag ctatggcgta
      241 agctattttc taagcaataa atggttcaag tcatctattt tgtcctgaaa tgctacctgt
      301 agttacagca ttgcttataa atggtcatag taaattcagc atcaaagaga atattacaga
      361 aaaagacagc agcagaagca ttagcattat ctagtattta tatatgttat caacataaca
      421 cagcagtaaa aggtttaaat gcatattaat gggtaccgtg tctaaaaatt actaaagtac
      481 ctatttagtg tattggatat ttttctcaag gagtgcttgc tgtgtctaaa cagcataatt
      541 agatatgtga cttagtacag ttaattccta ttgattaaat aacttattta tgtaccaaag
      601 ga
//
LOCUS       KCLJ01003167             764 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 352720cal ultra-conserved element locus
            uce-2120, sequence.
ACCESSION   KCLJ01003167
VERSION     KCLJ01003167.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 764)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 764)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..764
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="352720cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>764
                     /note="ultra-conserved element locus uce-2120"
BASE COUNT          228 a          124 c          160 g          252 t
ORIGIN      
        1 atacatcaca cgctacataa caaaagggag ggcagaagtt agagttgtaa cttcttttac
       61 attactaggt ctggttttac tgcaagagct gtttaaaata atttcaaacg ttagagtaaa
      121 tctctagtaa atatttaaac tatgtataac tagtcacaaa taaattaagc tgattttatg
      181 cattctctct aattagaagg gcatagcatt tgttgaaacg tgattagtat tattcattaa
      241 gcaaaaaatt ctcatttgta tcttattatc actattctgc ataaaccaac acaatttgtc
      301 atgaactccc tcatttgctg tatcctcaaa tagcagatta tgcttatttt tcatttggac
      361 agtggaaaat aaagccaggt gtttggcagc accagagtgt tcaggtgtaa ctgtgccagt
      421 gatggtacat tactagcagc gtggatgaag aatgaggcat ggagaatctt gggactgagg
      481 tgccttgagg cccatccctt ttgagtggtc ctgctgatga gacaggtggt gttgcatagg
      541 actgtttttg taaagtcagc ctttcacctt caagtggaaa tgagaggtgt aatacttgga
      601 tgtgctcatg gctcaagtct ctatgctttt gtattaaagt tttctaaagc tgaaaaatgt
      661 ctgttgctgc acagaggtct ctgtcagtgt ctgaaaagaa ttggcacaat attgcatggg
      721 cagtattatg tatttatata cataagcatt tacatgtgac cttg
//
LOCUS       KCLJ01003168             536 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 352828cal ultra-conserved element locus
            uce-4940, sequence.
ACCESSION   KCLJ01003168
VERSION     KCLJ01003168.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 536)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 536)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..536
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="352828cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>536
                     /note="ultra-conserved element locus uce-4940"
BASE COUNT          169 a           94 c          103 g          170 t
ORIGIN      
        1 ctccttaagc cagacagtgt ctgaaggaga aaagttttac tttcttctga ttttcacttt
       61 gggtcacttc ctcagcagaa gaggcaagag gattcaccct ggcagatgga gtcagctgct
      121 gacaatacat taaaaattcc ttttaatatt ctgcttagac acactgtaaa agaagaatgg
      181 atatcccgaa taattaaaat atgtttaatt tgcatggagc tcagggcatt gttctgacat
      241 caaacatcac tgtcaaccat atgtggaatt tcaactgcca agtgcttcat ttatgtgaaa
      301 attagcttaa gtgtacaaag aatgaaaaat ttatgattat ttcacatttt aataaatgca
      361 gtgctatgca ttaatttaga cttctaaaac aattttgaca gtgacaaggg aatccttcac
      421 agactaagtg ctgcagcgcg ccgtgcttca catgtcctgc ggaatcgtgt gctggagtgt
      481 taaggcagtt agatttttgt gttttgaaac aaagatatta tatgactata tcactt
//
LOCUS       KCLJ01003169             703 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 352936cal ultra-conserved element locus
            uce-576, sequence.
ACCESSION   KCLJ01003169
VERSION     KCLJ01003169.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 703)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 703)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..703
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="352936cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>703
                     /note="ultra-conserved element locus uce-576"
BASE COUNT          256 a          113 c          125 g          209 t
ORIGIN      
        1 tagttactct gggcttagta ttttatttct gtgagaaaat gtatcaaaag ccaacagtaa
       61 aatagaagca gaaataaaag gaaaaaatgt gtagaggctt acaagaaaga gcttgtggca
      121 tatgcatgag cataaaactt caagaaaaat ttaaattaat gaaggtagtt cacagtttaa
      181 aattaattat ttttgcgttt ctttttctca aaggttcctc ttcagtattc caaatataaa
      241 tggtggtggg attatttaga aaccaagtac attataacta aggcctatag caacctcact
      301 cagcagtgaa atttgttgtc tccctctgat cctcagatta tggagatgag gggatgaatg
      361 tacatcagta agattcccta ccgagatagt ttttcactct tttcagtaag aaaaagatca
      421 aagggaaaat agctaattaa cataccaaag gagacaaaac ccctagagct ttatcgttgt
      481 tgcaatccaa taataaacag ccaagtacaa aaaagattat ttgatagtga cacacagaat
      541 tgaaagcctt tgaaatgtca gcttctcaaa aaaatatttt tggaaggata tccataatta
      601 tacagaataa tgcttaagca ttggggagta actcttcact cctatgagag cttgcttgta
      661 aaactactgc gcttaagaac aacagcttgc attgccttta tct
//
LOCUS       KCLJ01003170             370 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 353046cal ultra-conserved element locus
            uce-1017, sequence.
ACCESSION   KCLJ01003170
VERSION     KCLJ01003170.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 370)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 370)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..370
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="353046cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>370
                     /note="ultra-conserved element locus uce-1017"
BASE COUNT           91 a          110 c          106 g           63 t
ORIGIN      
        1 catcacaagg aaaataaacc caaggtacaa acaacgtgcc ctggcctccc gctccgtccg
       61 gggcaggggc tcaaggtcac gccggggatg cggagagggg cgcggggctg ccccgtcccg
      121 gggctggcgg aggaggcgag tgtggaagtt tatgagctca tcaggatggt tgtaccatta
      181 catcagaggc aattataaat ggccaagagc aggggatggg gagccaatca gatcacagat
      241 gggatgtcaa cctaagacca actgtctcct ggctttgaca gaaggatttt acctccataa
      301 ttcaaatccc aaacccaagc gatccgcact cgctgctccc atcgcccagc tccccgccag
      361 cgctcccgcc
//
LOCUS       KCLJ01003171             463 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 353154cal ultra-conserved element locus
            uce-5619, sequence.
ACCESSION   KCLJ01003171
VERSION     KCLJ01003171.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 463)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 463)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..463
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="353154cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>463
                     /note="ultra-conserved element locus uce-5619"
BASE COUNT          140 a           97 c           86 g          140 t
ORIGIN      
        1 gaaataaaaa cagatttaac ctacagacct ttggttaact tcttcctaaa ctaaatataa
       61 aatgttacct catcttgctc agattaaaag gggagactcc ccccttcacc acacgttccc
      121 ttattgagaa tctcttctga agagtctgca tataaaagac aatccagaga catctttgaa
      181 ggttctcttt caaagcgtct ctacttccct gagcgtctgg ggatttctgt tattaattga
      241 agttaatttt ctaggatatc agtttgccat gcacgtggga aagattgata gcctcttcga
      301 ttctcaagag tgttggaaat gacactgttc catcaccggg tgtcttcact tttatcatca
      361 caaatcaaat tataaacatc ggggcaacct tgctggaatc tggcttcggg agatttccat
      421 aagattaatt aggcggccaa agcaaagatg gtaaaatcta agg
//
LOCUS       KCLJ01003172             545 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 353264cal ultra-conserved element locus
            uce-6362, sequence.
ACCESSION   KCLJ01003172
VERSION     KCLJ01003172.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 545)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 545)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..545
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="353264cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>545
                     /note="ultra-conserved element locus uce-6362"
BASE COUNT          147 a          104 c          105 g          189 t
ORIGIN      
        1 tttctctttg gtgagtagct gtttgtctca ctttatttac ttggtattgg gtatttgtca
       61 atgtcatttc atatctgcag aaaattcata cgttctatgg aagtatgtat gtgtgtgaga
      121 gtgctgaagg tcacatgact atttcatcct atttggtgga gcagcttgac ttttttccct
      181 tgcttttggt gatggttgtg agtgcagaag ttgattgaca gatgcatgcc agaaaccccc
      241 attctccttt tcaaagacta catatgatgg attgcgatct ttcagctcag caggacacag
      301 ggaccatgca agctgtaatt ggtcaggtat ggagtcagcc atttctcaac tcccctttta
      361 tttttttttt tcacaagggt ctaaccatat gattcacata attcatattt acagtaccat
      421 ctttctatct gtatcttcag ctaccagcga gtgtagtact gaaagtgaga aaggcaaaag
      481 aaacacaata atctgtccag ggaatcacta gaaaaaacta aattaccatc cttttcttct
      541 aataa
//
LOCUS       KCLJ01003173             653 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 353368cal ultra-conserved element locus
            uce-3191, sequence.
ACCESSION   KCLJ01003173
VERSION     KCLJ01003173.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 653)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 653)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..653
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="353368cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>653
                     /note="ultra-conserved element locus uce-3191"
BASE COUNT          215 a          101 c          119 g          218 t
ORIGIN      
        1 aaagcaggat gttgttagca tatagcactg cttggggaaa gcaggctacc tgtgtaatta
       61 tttccttagt gaaaacttct attgcattta attcaacaca aaacattttc tatatttcat
      121 gtcatgggta ggaatgaaaa tggagatagt tcatcaatgc tgatatgtga tataaaaaga
      181 gctgagaagc caagggtatg agagtgcata aaaatgtttt gtgtcctgac cagtgcattg
      241 cttattttac aatcagcccc aattgttcat tcctcccatg cagaagatac tcacatattc
      301 atttttaaaa gggcaaatca accataattc agtttataaa ctgtgaagct ggttgcgaat
      361 gtctggatga atattcatta gaatctctta atctgccatc gactgtgatt cattaggcat
      421 atgtaaatat cactcacttt aattgcccct aaactgactt aacataatat tgtcattagc
      481 aaattattag ttatttgtgt aactaatggt acattatggt gtacacgtta aatcgccaaa
      541 tatatgatta caattatgat gatgttttat gcggggtgca aactatttga tgaaatataa
      601 tggagccaaa tcaaatctgg tatgttaata agacagttgt ggaacttcat tat
//
LOCUS       KCLJ01003174             520 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 353476cal ultra-conserved element locus
            uce-264, sequence.
ACCESSION   KCLJ01003174
VERSION     KCLJ01003174.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 520)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 520)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..520
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="353476cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>520
                     /note="ultra-conserved element locus uce-264"
BASE COUNT          138 a           89 c          115 g          178 t
ORIGIN      
        1 tttttgtcat tttgttccct cagacttacg aggatgaaac tcacactcct gggggtgcca
       61 ggcattttag atcttgcatt taggaggagc cgtgatgctt tttgcgtctg tttgtctgtc
      121 catctgtctg ctggtctata ataagctgtg cagcgagaca gcagcttact atctgtgtgt
      181 gaaattagct aattggtgtt agcagcaata ttttcacatg ttttataagc aaagtgcagc
      241 aaggtatata aatgtagata tgatccagag acacacaccg cgcgcgcacg caagcctgtc
      301 gctgctcatg catagacgct cagaagtaat taatgttaat aagattttaa tgtgcttgtg
      361 agatcataat gaggagaaat gaatgctctg attagaaaaa ggtaactgtg tgtgtgtttt
      421 ggcttagaac aagatttcct ctctttttta taaatcacaa tttcagaact tgtttgtgat
      481 tgcatcaatc ggtttttatt ttcaaattag aggtctgttt
//
LOCUS       KCLJ01003175             610 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 353582cal ultra-conserved element locus
            uce-3228, sequence.
ACCESSION   KCLJ01003175
VERSION     KCLJ01003175.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 610)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 610)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..610
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="353582cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>610
                     /note="ultra-conserved element locus uce-3228"
BASE COUNT          173 a          129 c          110 g          198 t
ORIGIN      
        1 tctaattaat tcgactaaac catttttcag attgtccatt tgggtttttt tttaattctg
       61 tattatctgt gcagctatgc tatacactag tctagggaaa cttcatcaca gactgggaga
      121 aaaatatctg ttcaccttta cttggactct gtggcttgga tttgtggttc cttacaaata
      181 aggagcttct ggtgccgcaa cctgcacatg acgtctccct aataaattca catgacagtc
      241 atgaaacgct cctataatca gtgacatggg atgattttcc gctcctgaca agcccttgta
      301 ttgagtatga taacagttac tttgtcttca tccactgctg gagtataata tcaatccgtt
      361 tgatgatcca gcaaacgaag cccaacactt ctgtatcaat cttcatagag tgctgcctgt
      421 tgtctaacaa aaagcctgaa atgagatcat tcaatcactt tgctggctag ggtaggcttc
      481 tcttactgaa ctggttttaa ctccctgtca ctttctttcc ctttccttta cacaacgaag
      541 ctgggaaatc taattgaaat ggaaatataa ttttagggca actttacaaa gcaaacaagg
      601 gagagaataa
//
LOCUS       KCLJ01003176             657 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 353693cal ultra-conserved element locus
            uce-220, sequence.
ACCESSION   KCLJ01003176
VERSION     KCLJ01003176.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 657)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 657)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..657
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="353693cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>657
                     /note="ultra-conserved element locus uce-220"
BASE COUNT          225 a          132 c          106 g          194 t
ORIGIN      
        1 gaggctaacg cggtaaatag gggaaattta ccatccgtaa tgggaacaaa aaccacctaa
       61 tatgtttagt aatctacacc aatgtaattt tattagctat tcagtgcagt tcttacatca
      121 aacagcctca gaagccccag gatcatttta tattcactgg aagacagaaa gaaatccaaa
      181 acctagttaa ataaattgtt catttattcc tttcctttta tgcaccaaga tctacatgtg
      241 gtcattaatt ataaagagac tattatagca ccatattttc attcaatacg atgtcctggt
      301 atatatcaaa gaagtcccat aattaaaaca gaagggccac aatgacaatt aaaattacaa
      361 tctatatggg gaaagaaagt acagttctgc aatttttcac cctgtcactg tcagcaccag
      421 ggaatattcc agtcacgtct cttgcaaagc agcctaaatt cttcttcacc aatgcaacct
      481 caaaagcatt atcagcacct aagcaaaagc ctatgcaagt ataatttaat accaagccac
      541 agtttgcaag taatagcgta taaagtgata tttaagtggt gttttaagca cacttctgat
      601 ggctacagcc gccttttact ggtaaatgcg ttttcctttg agtagtgatt atgagtc
//
LOCUS       KCLJ01003177             555 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 353800cal ultra-conserved element locus
            uce-7242, sequence.
ACCESSION   KCLJ01003177
VERSION     KCLJ01003177.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 555)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 555)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..555
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="353800cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>555
                     /note="ultra-conserved element locus uce-7242"
BASE COUNT          174 a           98 c           99 g          184 t
ORIGIN      
        1 aggaaaagaa ggaaaagaaa ctgatggcac tttaaaattc tgatacagca cagaattatg
       61 attttgcatc ccctgtctcc tccagagcct tactaagaat taataagcag gcagattgaa
      121 tttctaagcc aaaatcggtc tcgagtcact aactttggag tgcttaaagt ctttctttta
      181 ttgagcataa actgtaatgg atctaattta tttcagacat ctagggtcat tagcatatgg
      241 aaagtctttt tatccttatc cctgccatat gctttaattc ccaggacatg ttcggtgagg
      301 ctctaaacag tttttatatt taattataat agcttgctgt tgatctaata gagctaaagg
      361 agacctgttg tcactggtca gaggttaaat actgattcgt ggagcagtct atgcacaaag
      421 ccctctctct gtatttcctt ggaattattt tatcctatcc ttaatacatg ttcaatagga
      481 attccttagg gagtaaagaa tttagcaaac agtaaactga gtggtttctc tttgaaatca
      541 ttacaaaatc aataa
//
LOCUS       KCLJ01003178             667 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 353907cal ultra-conserved element locus
            uce-1946, sequence.
ACCESSION   KCLJ01003178
VERSION     KCLJ01003178.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 667)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 667)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..667
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="353907cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>667
                     /note="ultra-conserved element locus uce-1946"
BASE COUNT          178 a          128 c          143 g          218 t
ORIGIN      
        1 cctctggttc gcctgctctt tggataaatt cacaaaagct gtttacttga agctctgtgc
       61 acttgctgtg gagtttcctg accccagtgg tctctttaca ttgttcaagg ggaattgttg
      121 aggtgttcat gatgtaccct tctcctctct cattatttta attgactcta tgttgtggca
      181 tcccagctat gctgaagccc cagagggcac cttgttcttc taagaactcc aaactttttt
      241 tactggctgc agaataaatg ctgcctgaat gagtaatgat tagaaagctt ttggaactgt
      301 attaccatag gtgacagctc tgaagagata ggcaggtaat gttaagaggc agggataaga
      361 ggctatgaca ttatgtctgg agggttaagg actcacagtc aaagcttgaa ctgctattac
      421 tggatcaata cttctcagtt caacacttat cttgactact ggttagaggc ttttgtagat
      481 atgaacactg agagagcaaa ataaaactga aaaaaatgat tgttgctgtt cacttacatg
      541 tggattgctg cagttattta ggtttcagat ccacaatttt tttcatgggg caaactccag
      601 tgacccgaaa gcaggatgaa ccaatgagtt atgaattata ctgcattttc tttgtccttt
      661 tccttca
//
LOCUS       KCLJ01003179             582 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 354019cal ultra-conserved element locus
            uce-4413, sequence.
ACCESSION   KCLJ01003179
VERSION     KCLJ01003179.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 582)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 582)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..582
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="354019cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>582
                     /note="ultra-conserved element locus uce-4413"
BASE COUNT          217 a           90 c          115 g          160 t
ORIGIN      
        1 agaatggaat ctctttacga ggtgtttgat ttcaatacag atttaaacct cagaacagaa
       61 tcaacaatgt attttaatca ggtacctttt caagtattca ctgcatgaag taccagttgc
      121 ctgagggtta tgaaataata ctaaaaactt tataatcatt cattgattta gttttgacca
      181 tagtatatca tttgaatcca atgggaacat aaagagctat ttgtgaggtc aaccacagta
      241 cagacagagg ctgacatgat atcgatggca aggtggaaag aaattgccaa atacagcaga
      301 tcaatacctc gtttcactgt tacacccttc tgcagacata aaatatctat ctttacagct
      361 acgaaaataa taataatgaa agtgggagat aaatgcttcc ctcaaggtaa actatttgat
      421 tagctgaggg caaaggtgac aagagcagtt acactaaagt aactttacag tcttaaataa
      481 aaatggtggg aagagcagca gataaaaggc aaaatgaagc tgaacaagtt ctaagagata
      541 aagatgtact tttggaaatt ggggtagcat gtatacaaag gc
//
LOCUS       KCLJ01003180             640 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 354230cal ultra-conserved element locus
            uce-2994, sequence.
ACCESSION   KCLJ01003180
VERSION     KCLJ01003180.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 640)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 640)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..640
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="354230cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>640
                     /note="ultra-conserved element locus uce-2994"
BASE COUNT          154 a          135 c          155 g          196 t
ORIGIN      
        1 ctgggaaagc tattgaagtt acatagcctc taggtgactt tttgagttcc tggtcttctc
       61 ctttgtccat tcctctgaga gtctacaggc gtgaccagtc agagggagaa gatgccaaag
      121 taaatctcca ccgtgtgctt tctcgtatcc tatttctctt cattcatggg tcttcttttt
      181 ctcttgatag gaccagaggg ctgtaacctg tttatctacc atctgcccca ggagtttggg
      241 gatgctgagc tgatgcagat gttcctgcct ttcggtaatg tcatctcctc gaaagtgttt
      301 gtggatcggg cgacaaacca aagtaaatgc tttggtgggt aaagataaca aaacaattag
      361 attcatccag gaaagggctt tctctgaata ctttaccttt caaactgctt tctttctgct
      421 taagctttat gatttcctgt caatactttc ccccttcctt ctttctctcc tgattgtctc
      481 atgctcagag ttgtgtgtgc tgcttagagg tcaaggtttg gcatctcacc agcagcaaga
      541 tgctgcagac actggtgggg tcagaaaata aaagggaggt ggggagggta aaagactaaa
      601 gcaactggag caaaatagag ggggctgggc ataggtgaaa
//
LOCUS       KCLJ01003181             738 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 354343cal ultra-conserved element locus
            uce-233, sequence.
ACCESSION   KCLJ01003181
VERSION     KCLJ01003181.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 738)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 738)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..738
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="354343cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>738
                     /note="ultra-conserved element locus uce-233"
BASE COUNT          178 a          162 c          166 g          232 t
ORIGIN      
        1 ttgtattgtg ttttatttta ctttatcagt tgtggtcgat aatgagatgc agatgattat
       61 tccttaagag ctaggttgac aatggcttgt atcgggagac attctatctt catagagtcc
      121 cttgcaaatg caaaactaga tgggtatttt ttaaaaggaa ttgcatttca ttatgcagtc
      181 ttaggtgaat tttcatgttt aagaagccag aatacaaggg agcgctatat tagtgtatta
      241 ttctcacaac aaacaaggca ctgttctgtt gctacctgct tggccattgt tcccaattgt
      301 gtgtgctttg cagtggtatt tggatggttt cctgctctct gccagcacaa aaaaggcatt
      361 tctgttacaa tggcccctaa ccacacaatg acggcattaa ggatttattt ggaggtttca
      421 ttattttctc ctcttttgtt ccttccagga tgtcttccaa gcgaccagcc tctccgtatg
      481 gggaagcaga tggagaggta gccatggtga caagcagaca gaaagtggga gaagaggaga
      541 gtgacgggct cccagccttt caccttccct tgcatgtgag ttttcccaac aagcctcact
      601 ctgaggaatt tcagccagtt tctctgctga cgcaggagaa ctgtggccat aggactccca
      661 cttcccagca caacacaatg gtaggtttgc tttgctctat tgtgctctat cccttccctg
      721 agctctgcct ccctggca
//
LOCUS       KCLJ01003182             653 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 354456cal ultra-conserved element locus
            uce-7064, sequence.
ACCESSION   KCLJ01003182
VERSION     KCLJ01003182.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 653)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 653)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..653
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="354456cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>653
                     /note="ultra-conserved element locus uce-7064"
BASE COUNT          176 a          126 c          162 g          189 t
ORIGIN      
        1 tttttcaaat gttttttcta tgaaacttgt tgctgttttt gcagggctta atacggttta
       61 atttggggtg tcgttttacc tgtaattata atgaaggatg ttggaggtag agaacaggac
      121 atagaactga cctaacaaca ctctgcagag agatttttct ccatctccat cagcacacct
      181 tttaagacag cattgctgct tcaccaaaca tcctcctaag tgagagaagt agggataact
      241 cttggaaaaa gttttgaggc tagtgacaaa atatgtttgt ctttcagatc cccagctcaa
      301 gggtatagtg accaggttat attgcaggca aggctactac ttgcaaatgc accccgatgg
      361 aagtctcgat ggaaccaagg atgacagcag taattctagt aagtgactgc cccaggggaa
      421 tgtcttaacc gcacacgcag accgcaccgc tcgaatgtgt ttgcacaggc accgtgggaa
      481 tgcctttgga gggtttctga atgtgttgtg tgtcccttgg acaccagcat ggctcgtgca
      541 ggacattggc ctaaatgtgt tgcctctgaa ggggaaggcg taagagctca cggttaggag
      601 ggagatattt aggccaatga atgtcttctg gtaattttat gtaaaattat att
//
LOCUS       KCLJ01003183             517 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 354569cal ultra-conserved element locus
            uce-4977, sequence.
ACCESSION   KCLJ01003183
VERSION     KCLJ01003183.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 517)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 517)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..517
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="354569cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>517
                     /note="ultra-conserved element locus uce-4977"
BASE COUNT          143 a           91 c           87 g          196 t
ORIGIN      
        1 gtgttcagca tctccaattt taaagtttaa atagatctat actttcccca aggacttatg
       61 tgcaaactaa tattaagatt aaaatctttt atgtttgttc tgtagcttga aacaaaaaac
      121 tagtgcatag tctgttttat cccactggct ctctaaggtt caggtattaa cataaataca
      181 gcccattaac acttgttcct ctctgtcagg acataaatta agtctgcagg tgttccatga
      241 agctttaccc ttggtactaa ttaagccttg ataattaggt ttgttaaatt caggccttta
      301 agcttatatt ccctctttgg gttgccaaaa tggggatttg caatatacag ggctttttgc
      361 tggttttcta ttttttttta gttttgtttt caacaaaact gcagtagtaa tgaactctcc
      421 tttgcttaga tggttaaaga ttcaaaacct gcgaagaact tggatatctg ctgatattta
      481 catcagaaca ttttcttttg ctggcttttt tggcaga
//
LOCUS       KCLJ01003184             638 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 354673cal ultra-conserved element locus
            uce-876, sequence.
ACCESSION   KCLJ01003184
VERSION     KCLJ01003184.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 638)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 638)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..638
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="354673cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>638
                     /note="ultra-conserved element locus uce-876"
BASE COUNT          201 a          118 c          143 g          176 t
ORIGIN      
        1 tttttcatac tatgaaaatt ctgcaatgga ttaaaagaac tttttcttct tcaatcggag
       61 gattgacgag ggaaagaaca ttaatagcca gtttttattt taccaaattt caggctagac
      121 tagtctggaa gaaaaggcag tttatatatt agagagtgaa acactaaaca gatcttagtg
      181 caatgcagat aaggttttac gagcacatac gagctacagt gtatatacac agctaggcac
      241 ggaagatttc ttaccatgaa ttgcacattg tcaaatccat tagccagcaa gtggttttca
      301 tactgaggta gcccaatatt ttccaaccat tgtcccactg tctggacagg gcatcggggt
      361 cctgtaggag ggtgaagagg gaggcgttta agcaacgaat aaccatccac tggataatag
      421 cggtagtcct gggctgagag gtggcattgc cacatcgtgt tcctggaaaa gttggtatca
      481 aacgagcccg ccagcttgac agattaatgt tttcagcaaa cagaaaagtc agaagtaaaa
      541 catagttttc agggcagtat ataacgtaag gtctgatcgc agctctacat ttcttggtta
      601 ttaatcttta ctacagacca gtacgtcata cagtagag
//
LOCUS       KCLJ01003185             481 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 354784cal ultra-conserved element locus
            uce-459, sequence.
ACCESSION   KCLJ01003185
VERSION     KCLJ01003185.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 481)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 481)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..481
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="354784cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>481
                     /note="ultra-conserved element locus uce-459"
BASE COUNT          148 a           81 c           87 g          165 t
ORIGIN      
        1 aatatggttt gatagtgggc acaagtactt ggtggtatgt tgaatcttcc cacaaggcca
       61 ttttacataa tttattaaca agatcatttt actttctgat ttaaaagatt tgtaactata
      121 agctcctgtg ttttccctga acaagtcaca atgcacacag taggcaaagt gttaaagggc
      181 taggaaaata ttatttcatc actcctgttc cattagaatt cacttgggtg gctgagaaaa
      241 tggtttatgg attagagaga gaagaacaag ctaaaacatt tcataccttc atctctgata
      301 aattccccaa actcattctt tgcatctgag ccataaataa caaccatgct ttttgctaaa
      361 aagagctttt ttcctgtacc aggtcttttg tcttggagat gaatgctata ataaatttga
      421 agtcttaggg ggggcattgt ttgaactata acattatggt ttacaactgt tgcttctatt
      481 a
//
LOCUS       KCLJ01003186             502 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 354894cal ultra-conserved element locus
            uce-2282, sequence.
ACCESSION   KCLJ01003186
VERSION     KCLJ01003186.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 502)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 502)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..502
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="354894cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>502
                     /note="ultra-conserved element locus uce-2282"
BASE COUNT          150 a          108 c          108 g          136 t
ORIGIN      
        1 ccagctcagc cttggaaatc cctgtaacaa attctgattt gctcatttct cctgctgtca
       61 tttttctcct gtctcgggtg aagggtttgt gtttaataac atcatttgca tcagtgtgtc
      121 ccaacagacc aaggtaccag ggctgggaga gattagcatg gtaatctcat tctgatggat
      181 aaaattagca aagatattcc cctgaacaga gggctgccat tggtgaactg ctgtgcttag
      241 aatcaattac taaattactt tgagctctaa gtcgacagta acagaaaaaa attggcatcg
      301 accgaagtga aataagataa aaaatacgcg atcattaaat ctctcgctac tattcgcgaa
      361 tgtgactcac aagaactgca caaaaaataa ggcagaattt aatttttaac agtggtccct
      421 gtcatcgttt caaccagagc tgctcagtgc acgggagcac agctcagcct tggaaggaag
      481 aactggcctg ctggcagctt gc
//
LOCUS       KCLJ01003187             767 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 355001cal ultra-conserved element locus
            uce-4292, sequence.
ACCESSION   KCLJ01003187
VERSION     KCLJ01003187.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 767)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 767)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..767
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="355001cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>767
                     /note="ultra-conserved element locus uce-4292"
BASE COUNT          251 a          150 c          112 g          254 t
ORIGIN      
        1 actttcatat ttcacatatc tactagttaa atagctcaaa tttctccact cctagttttg
       61 aatagcacag aatactggct ttgtaccctt gggctacttg gatttaatat caaattctta
      121 ccttgcacaa ggtcagagaa aaaaataaac cttataaaat tggactcata tgaagaatga
      181 gtttctatct tttaatacta ccaaacaatc tgcaaattat ttaaattaag acaaccagca
      241 ctccaacatc tgcaagcaaa atgcttaaac gccaaatgca actttactgg cataagaaaa
      301 taataagtgg agttcaattt gtgtcagcat agctcaggaa aataagatat catgtcttgc
      361 tgtctgcttg atgtcaactt ctcagattca aaccctaatg cctcatctta ggctgtcctt
      421 actggaggct gccaaatagc aaggttcagc cagagttcat gcagctacta caaaataggc
      481 ttctcctttt tcaatcatta tgaaccttct gctttatatt gtacacactt gattatatct
      541 atccttgaaa tgtatacaac tctattagcc tcttctccta ttcttttaac atactgtaaa
      601 ttcctttctg tgcttagttt gttttatgac ttacagaatt aggcttttaa actttcactg
      661 cacagagaag attgagttgt gagattggct acaaggagaa aacaaaggaa tgggaattta
      721 tattgatacc aaaagtacga acttttgcca tttctactaa aatatta
//
LOCUS       KCLJ01003188             776 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 355112cal ultra-conserved element locus
            uce-1780, sequence.
ACCESSION   KCLJ01003188
VERSION     KCLJ01003188.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 776)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 776)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..776
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="355112cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>776
                     /note="ultra-conserved element locus uce-1780"
BASE COUNT          224 a          179 c          149 g          224 t
ORIGIN      
        1 aaaactcggt ttgagcccag attccacttt tattaaagca ctccaacagg ccagccttcc
       61 ctggtgagaa caatatttgc tttctgatag gctgcatttc catacttttt ctttcgcacg
      121 cgtgtcacga tgagaagttt taaaacaaac ggagttatcc ccagctgcta agttctgaca
      181 tgcactttaa acaagcaaac ccagggatgt ggcaggctgt gaaggaaggg agagcaaaac
      241 tggcatatgt gtagctctga tcacagaatt atcatctcct atcacacact caccattaga
      301 cccagctgct gccaacctga ccggtgcatt tctccaagct aagctaacaa agcacttatt
      361 tgttatccag ggaactacct ctaatagact tccagtgaaa taatatttgc tttccaagcc
      421 tactttgaat cccactcact ttgttaaaaa gattgcctct ggctgtctct gctggtctaa
      481 tctaatagtt tctagtttgt acaagcaaag cgctttcagc caactatata aataacttaa
      541 agagaagaag acacttttac agcgctctgt gccggctgct atagaacatg acagattagt
      601 aaatgacgcc tcagtggagc tcatctggga acctctgtca gttgaatatg agcaattaca
      661 atattgtatt tgggctgaaa gggttgtctg tcttcttaca aaaaggctaa caagaaaaat
      721 aattcctgtc ttgcttctcc tgtgcatgaa actgatctaa gtggctctcg tcgctt
//
LOCUS       KCLJ01003189             643 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 355223cal ultra-conserved element locus
            uce-2238, sequence.
ACCESSION   KCLJ01003189
VERSION     KCLJ01003189.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 643)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 643)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..643
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="355223cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>643
                     /note="ultra-conserved element locus uce-2238"
BASE COUNT          190 a          120 c          121 g          212 t
ORIGIN      
        1 tttatttgta gtttcaaaag aaattgcata ttcttgctgt tttatcagtt cttctgggtc
       61 atcttagata aatatatatg tacaaacact atacctttaa acttcagagg aaagaagctc
      121 ttgtatcaca agcaatgttt ttctggtaca gttaacttat ttctgtctcc ttaaactagt
      181 ttgtctttat gctttgaatg ctacagtaat ttctttaatc aaattgatgg aagtcccttt
      241 cccagcccac actgaaacca atttattggt catgatacgc cggctatgtt gctaacagtc
      301 gtaacgaact gtcaggcaat atcgcagtgc agctaatttg aagtcattag gtgtgcagcg
      361 ttcaggcaac aatttgttac agtggttagg aacacagctg acatttctga atggctttgt
      421 tcagagcagt tctagatgag cccaagcaaa ttgtaaacta atttaaacat cactctgtat
      481 tataggagct actttgtctt acactggttg ctaataaagc accccaaatt aagtcagaat
      541 gagttaagca ggtgagtttg agtttcatct ttggaagata cctggatcac cttaaccaaa
      601 atagagtagc tctcagtcat gctccatagc agttgcaggg gaa
//
LOCUS       KCLJ01003190             667 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 355330cal ultra-conserved element locus
            uce-6671, sequence.
ACCESSION   KCLJ01003190
VERSION     KCLJ01003190.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 667)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 667)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..667
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="355330cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>667
                     /note="ultra-conserved element locus uce-6671"
BASE COUNT          225 a          126 c          117 g          199 t
ORIGIN      
        1 aaatgaacag cagagattta caggcacctg gatgttacag gagcagtttc accctgacaa
       61 aagtgaacat acctaactag tctttaagat ctaagaagga acagaaagaa ctttaaaaat
      121 gcaacagaga ggtgatttga caagtcacag tcagaaccgc aaagatcatt cctctaacat
      181 tagaggaaat gaaacctact tggaactcct tcatcaccat gcatgtaccc tcaattaaag
      241 cagtgcccct gatagcaggc agtataatct gcattttatt tcactcatga gcaaaataac
      301 aagttactca ggcctgcggc actcatgagt gatatgggcc gtgtaatatc ctctccattg
      361 agtttcctat tattaagttt gaaataaaga gttcaaaatt aactgtgaca atgattttat
      421 ctagtgttgg catcaccatt agcttctgca gtttactgct aataaaactt taaatttgct
      481 attacttgta ataacctttt tgccacctta gctgtagaaa ttagacaaag aacccggcca
      541 aaacatggct aatgacattt tctatttgca cggaggaact gactagaaat aatggctgtt
      601 atttataaag tgttaatagt ataaatttca gatttcagct gattaatttg aagcacttgc
      661 ttctttt
//
LOCUS       KCLJ01003191             479 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 355440cal ultra-conserved element locus
            uce-5904, sequence.
ACCESSION   KCLJ01003191
VERSION     KCLJ01003191.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 479)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 479)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..479
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="355440cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>479
                     /note="ultra-conserved element locus uce-5904"
BASE COUNT          164 a           70 c           92 g          153 t
ORIGIN      
        1 gcacacagta gggaatgagc ataaaaaatg agggggaaaa acccatctac tttgcagcta
       61 tattcattaa ttaaaagaag attgttaaac taaatttgga cttctttaat tgtgtttacc
      121 caaaagcctt ttcttcctaa tttaaatagc ataaacatct ggactaaagc aatattagaa
      181 tcatggcagt agtcaagcaa atcttgtgga aaataatgaa attagatccc tggtgttgtg
      241 acagagtaag ggcaggatac atcagttcga tgttaataaa atttccatga atgactgaat
      301 acaattaaga aattgtcagt tgcggcaatg aacttttgta gctcatagat gtttgcatca
      361 tttgattatg ctggcaattt aaaattgttt gttagtgtct gtgttgggat attaattatg
      421 acctttatta tagcccacaa ttaaaccagt catatagcaa caagcagcct gtgttgtgg
//
LOCUS       KCLJ01003192             633 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 355545cal ultra-conserved element locus
            uce-3263, sequence.
ACCESSION   KCLJ01003192
VERSION     KCLJ01003192.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 633)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 633)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..633
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="355545cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>633
                     /note="ultra-conserved element locus uce-3263"
BASE COUNT          165 a          139 c          155 g          174 t
ORIGIN      
        1 ctttgctgta ataagaaaca gacataaagt cccccttgtc acaacaaccc gcaatgtttt
       61 tatttttcct cctttgaaat tgatgcagtc tgggcaatag atgcagtctg accctttgga
      121 tgtaattttt ttgacaaccc ctgagagccc cggggacaaa aagcgttgga ggacctgaaa
      181 cttttacctg agcccaggtt ctccggcgct tcccaaccaa aaggggctac agagaagcgt
      241 ctaagccagt tcacagagcg agcgtgtgtg gggacttctc gctgccacgg acccttgatg
      301 catgctcccc gcgctccagt ggtcccgtgt cagagggcgg agttttcgaa aggaggccgc
      361 caaaaataaa aggcaaagag acgggatcgg ctgcagcggt ttcccacagg aggagggagt
      421 gtgcatcggt ctggtaacaa acagagaatg tttctctctt taaaatctgt gttttatctt
      481 ggatattttc agaatattct tgttaaaatg cagattaaaa ctgttagggc tctttaggat
      541 ggtgcatttg aaaatatagc aaataggtgc tcttaggtgc tttcactgaa gtactgcact
      601 aacatttact tggtttctgt cgcataagtt tac
//
LOCUS       KCLJ01003193             633 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 355657cal ultra-conserved element locus
            uce-7741, sequence.
ACCESSION   KCLJ01003193
VERSION     KCLJ01003193.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 633)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 633)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..633
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="355657cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>633
                     /note="ultra-conserved element locus uce-7741"
BASE COUNT          218 a          114 c           99 g          202 t
ORIGIN      
        1 taaggacagg ttaacacaac tgaaattctg catcccagca gtgtttgcac tagccaatgc
       61 tcaggaccaa tggaataaaa caaagcaggt aagaaataca aaaatctatg tagcatgaaa
      121 tatctctaag agacttgttt agtgaaatta actagtagtt taatagaaaa aagcttgatg
      181 tatgagagtg ctccaatttc ttcatagaaa ttaacatttc aatcctgttt ttatctagaa
      241 gtcattaaac tgtgcaacat gaattattgg aactgtagca gagaattaac tctattcatc
      301 aagtaagtcc aaacagttta gagtgcatct gtaatgaaaa aatagctcca catttctatc
      361 tcttctcatt aaagtaaacc agttttccct ctctcagtat ataaaactgt cttctcctca
      421 tgtaatttat attaccataa gccagctcac attctaaact attacacgcc tccaattaat
      481 ttttgcagct tttgcctgaa aatttaatga gatagtagtg tatgaacctg ctgactccag
      541 attacatgtg tgcttccaat attaatgttg gcataataat ctgatacata cttgatgaga
      601 gctttccact attgtgagag tagttaaggc aat
//
LOCUS       KCLJ01003194             530 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 355769cal ultra-conserved element locus
            uce-3810, sequence.
ACCESSION   KCLJ01003194
VERSION     KCLJ01003194.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 530)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 530)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..530
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="355769cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>530
                     /note="ultra-conserved element locus uce-3810"
BASE COUNT          150 a          119 c          100 g          161 t
ORIGIN      
        1 gcagtcctca tcctcccctc tgcgacaggc tttgtgctgg ctgaggagct gctcctgcct
       61 ggggacaagg tgtggctgat gcgtcccaga taaaccctca cacaaaaagg cactgtgtca
      121 ctgaatggga ttccagtgta gctctttaat ttcatgcctt ggaaatgttt ctcctctttc
      181 atccaactgc ctttatctta acttctgatc tgaggaaagc agcagccttt caaattgaac
      241 aaaccgtgtt tcaaataggc tcttctgctt gtgacaagat gtacctcatt ttctctgcaa
      301 gccctcagca aggtcacacc tttttaattt attttctgta agaaaaatct agttgcatga
      361 tagaacaagg ccagatctag ctagaggtca tttcttgaac tagtcataaa gtagaataga
      421 attagaacca ttcccagaac tttgcaagca tagttctatt aaaatatggg ctttgtgttt
      481 acaaatcaac ataaatagct gcttaaagtt gcagccaaat caattataat
//
LOCUS       KCLJ01003195             583 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 355878cal ultra-conserved element locus
            uce-3470, sequence.
ACCESSION   KCLJ01003195
VERSION     KCLJ01003195.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 583)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 583)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..583
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="355878cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>583
                     /note="ultra-conserved element locus uce-3470"
BASE COUNT          202 a          106 c          104 g          171 t
ORIGIN      
        1 cctccatccc agtgacatag gtgtctaagg agatagccat aaattcggca gaaaaccgga
       61 ctccattaaa aaaaaaagaa aaaaaaaaag gaatgataat aaaaggttga ttaattatgt
      121 gcaataactg ggacagcata tcatgaaaat tccattcttg tttactcagc taattcactt
      181 tttatgagtg tttaggcttt aaagcaaaac aaagcactaa ttacccaatt aacgagcaat
      241 taagttactg cagcctaata gcctgtacag tggctgcctt tatgagtctg atggtgagtt
      301 agagacccat taaacaaatt tatacacagc tgtagcaaac attacatttc cagagatgtt
      361 acattacatg ctaatatttt cacagccttg aaacatcatt cactggttta gtgaatagtt
      421 tgccagttta ctcagccaag ctcaaaggga aggcattgta ccagcagcta caacccaggg
      481 atggatgagg atgtctgtat ttcaaagcct tcttgaaaaa tcaggtggct tttaatcaag
      541 gtgagtaata ttcaccttta cattttaatt ttgccttaat tta
//
LOCUS       KCLJ01003196             649 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 355989cal ultra-conserved element locus
            uce-6730, sequence.
ACCESSION   KCLJ01003196
VERSION     KCLJ01003196.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 649)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 649)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..649
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="355989cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>649
                     /note="ultra-conserved element locus uce-6730"
BASE COUNT          172 a          165 c          131 g          181 t
ORIGIN      
        1 aaagtaaaga taaaagcaga tgcagttgga taaatgaaaa cagtttgtaa atgtgtatgt
       61 gtgtttcata tatgtcttca cataaacaca tgtacataca aatttatcag attacatctg
      121 cttttacctt taaattttta tgaacacagg catatggcac attttcctgc cttggatttt
      181 ttgtctgcac agacaggctg gcttggcact ccatgagcat acacagcttt aagtatttag
      241 ctgagaaact ctgttggaaa ttagagcatc cgtgcttgca gagctctggg tgatttgacc
      301 tcccaggggg tcccccgtct ggcccctggc tcaccatgcc atgaatacat ttccatccat
      361 ctccagcccc catcacctag gcagctaatt cctttgagcc ccctccgcct tattaaagtc
      421 acagatcact ttaccaagct taatactgtc agggccagca gagcaagagt tcagacaggc
      481 tcaccacaat cccagctttc attagggtgg ggtgcttctc gtgttttgat ctgcacaact
      541 cctagcaatg agctgtaggg tcgcctccag attccttcag taaacccttg gcatggatac
      601 aagtgccatc acagctgctg caaaacctgc ttccaaaggc agcagcgct
//
LOCUS       KCLJ01003197             788 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 356100cal ultra-conserved element locus
            uce-6085, sequence.
ACCESSION   KCLJ01003197
VERSION     KCLJ01003197.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 788)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 788)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..788
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="356100cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>788
                     /note="ultra-conserved element locus uce-6085"
BASE COUNT          250 a          163 c          138 g          237 t
ORIGIN      
        1 gagaggtgga gcttggcatt attctcgatg cacttccctg gccacaactt ctccaaaatc
       61 ccttttgtct ttcttttttt ggcagggaat gagagcagca cagctgtagt gtaacaaaag
      121 cagacgtgag accaaaaata aaaaaaaaaa gttggtgctg agagggttaa acctatttaa
      181 ggggttaaat atgcaattac cactgactaa aaccagagag acatatagat aaatagaaga
      241 aatgaagtcc ccaggttcca ttcagaagcc ttcatcacat tactaccaga cagaaaactc
      301 tttaagtacc attttcagat gttaaatcat tgttcgtgca gcacatattc tcactattcc
      361 tgagggaaca atatctgaag acagcgtgct aacaaatgca atccagtaaa caggcatttt
      421 tcctcttgtt gttagtacct ttgtgttcca gctcccagct ctgtcatcca tgccttctct
      481 ctgctttgaa gttaaagtac tgaatgagcg ttgtcatcta ttatccagag tgtgcatgta
      541 gattataaat aagaaataaa agtgactttc agtacactgc ttttgcatta gcaagttgcc
      601 ttctctgtta cctcctctgt ccttcatact ttgctaccaa cattatatta aaaatataac
      661 tttaagtgtt tcttctagaa tgctataaaa tatgtacaca gcagagacga aagttttact
      721 gaaacaaaca agtccagcag tttaaccagg ttcatgagtt cagctccaac agactgttta
      781 acccttat
//
LOCUS       KCLJ01003198             785 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 356211cal ultra-conserved element locus
            uce-5178, sequence.
ACCESSION   KCLJ01003198
VERSION     KCLJ01003198.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 785)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 785)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..785
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="356211cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>785
                     /note="ultra-conserved element locus uce-5178"
BASE COUNT          240 a          159 c          156 g          230 t
ORIGIN      
        1 ggccttcatc tgcatgcaaa attcctattg acatcactgg gagggccaca ggcagatgga
       61 gagtactttg taaaccttac aatgtcatag gagaaaggca cagaatttgc agtccaaaaa
      121 agtgagcagc tttatctaat attggtcttt aaacatggag tttgaataac agttttgcta
      181 gcaataacaa ccctcttctc tgcaagctat ctaacctaca cgtttctgta aagtcttcat
      241 atttaacact caaacaattg atgtccctat agtataaaca ggatagataa tgaatataag
      301 tgggatagaa aattaatcct acttgcgagg aaagagagtc ataattcact taggcttctc
      361 agctcttacg ttatgaggtc ttcagctaac tcatgggatc cattccacat cccacagatg
      421 ctcattatga attcttttta tgtgcaacat gtggggacta accagtttca tatctcctgg
      481 tattagctgc aatccaaagc attttgtatt aaaacagaat gcaaacacag atgccattca
      541 atacaaagga tttgaatagt ctctgtttta acataaagtt ggtgtgtctt aatttgcttt
      601 gaaacagcaa tgggaagaaa agtcttagga gccaggcttg acaaaaaggg gagactggcc
      661 caggtgactg ctttgattca cggaaggttg caatgggatc tttgcttttg ggatgctgcc
      721 atagcctttc caacactaca cacattctgg agtactacta cctgcgttct gtcccatgca
      781 gctcc
//
LOCUS       KCLJ01003199             581 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 356322cal ultra-conserved element locus
            uce-7455, sequence.
ACCESSION   KCLJ01003199
VERSION     KCLJ01003199.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 581)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 581)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..581
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="356322cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>581
                     /note="ultra-conserved element locus uce-7455"
BASE COUNT          175 a          101 c          100 g          205 t
ORIGIN      
        1 atggaagact cccctctaat ttatttattc cttttctgtt ctgttatcct gatatgctgc
       61 ttccagttac cactgcaccc cacactgtat gggattacgt gattttgttt tcagattgtt
      121 ggagataaag ttacttcatt attaatatat atgcactgtg catatccata aatattgaat
      181 atatacgaaa cctactgcaa gtgttaatag ttaagataaa cgaagtccat tattgcaatg
      241 agtgactatt tctatgaccc tatttgcaat aaaagcagat tcaatgatat gagaaaattg
      301 ctaggtttca gaataattga accaggccag acgaatcccc acaaaggcat catttacaaa
      361 gtactttgct tgtctaaaat atttattccc acagaaggaa atggaaaaag agttcatatg
      421 gttacacggc tatcctctga gtgtaaaatt gttttatcat gttatgttta tttcctagac
      481 atcttccact gaggtattgc agaaaaaata ctggctgtgc agttaattcc tttgtgtgga
      541 ctgttcatat ttattctctg gggagtcaat catgttttgt t
//
LOCUS       KCLJ01003200             481 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 356429cal ultra-conserved element locus
            uce-1482, sequence.
ACCESSION   KCLJ01003200
VERSION     KCLJ01003200.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 481)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 481)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..481
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="356429cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>481
                     /note="ultra-conserved element locus uce-1482"
BASE COUNT          146 a           80 c           80 g          175 t
ORIGIN      
        1 ggctgaaaat catttttagc tcttatctct gtgatcggtt acccctgctg ttctttaatg
       61 gccttcacct cattatgcaa ctagtcatta aaagcttagt atccagtaca atggtagctt
      121 atgtaaagtg atctatgaga gctttatata ggcttaccag ccgcagcctt aattttactc
      181 attcgtctta attttttgta atcatttttt gtaaaaaggg tataatgtca ggcatgcttc
      241 cctgcgactg acagatccaa tctagcagat aattaccata aggaaattga tgttttagtg
      301 tgcaggggag aatttaattt actcagacat cctacagtac aatgcattcc aaaagatatg
      361 aggatttaag tttttaagaa attaaatttc actatttaac atgattactt atgttgaaca
      421 tcattaacta gctttttttt aactgtttga tataattaca agagcagtta tgtggtctaa
      481 a
//
LOCUS       KCLJ01003201             601 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 356538cal ultra-conserved element locus
            uce-4237, sequence.
ACCESSION   KCLJ01003201
VERSION     KCLJ01003201.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 601)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 601)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..601
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="356538cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>601
                     /note="ultra-conserved element locus uce-4237"
BASE COUNT          163 a          131 c          131 g          176 t
ORIGIN      
        1 tctcttgtca tgacttttag ccagcataag ggaagaggga agaagtcatt aaaatgcagt
       61 tctttcaatt acgtcccgtt atttgtcatc tttattgctt ttctatagtt ttcattgcac
      121 ctttaatagc acgcctggtc agaaaaggtg agctggaatg tgaacgtgct caaatcccag
      181 tccctgtaga ttttaatgtc cctgcagact gctggcagcc tgcttccagc tgtggcaggc
      241 atgatgcagt gaattgcttt tcaatgttct ttactcaaat aggcagtaat tacaagctta
      301 aagaggttta gtggtccagt aaactacata atcacccctg aattagcctg ggctcatcag
      361 ttgcagtcca gcaacctcaa gactgctgtt tgtatgcagg ctttatcacg tagcaacctg
      421 agcagcaggt gtggaacagc aagaatcccc cataaacaca actgtctact ggggacaatg
      481 atctctaatg agatgaggct acagcatcac tgtaatttaa gtgggaaaat taacgctaga
      541 gaatgtgcac tacttccaag agtctctgct tcttcagaga acagcggtgt tttcctggct
      601 t
//
LOCUS       KCLJ01003202             742 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 356649cal ultra-conserved element locus
            uce-4856, sequence.
ACCESSION   KCLJ01003202
VERSION     KCLJ01003202.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 742)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 742)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..742
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="356649cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>742
                     /note="ultra-conserved element locus uce-4856"
BASE COUNT          224 a          117 c          162 g          239 t
ORIGIN      
        1 ttcacatttg gctaagggaa aattggagat gcctgtttgt actggtgaag gaggaaatac
       61 agatttcagg agtggaggga aggaggggaa gggattgcct ttctttgcat taatataaga
      121 tgaagattaa ttctgctagc aggattctgt ctgcttgtca gaattcagtg attttccatt
      181 ttggatcagt gcggtgccag aatgtaaatc ccattgcctt gtgtctttca aaataaaatc
      241 aaaaagcctc cctgattgct tatatgggca gctagcacac cttaagaagt aagaagggtt
      301 cagacaggaa tataataagg cccaggaaag tggcagcatg aaagggatga cctttatttg
      361 caatcatagc tgagatttac agtttattac tgatagcttt tataaagagc cattcagttc
      421 agaggtgaga ggtttgtcat ctggaaatgc aattaacttt agccttatcc caatccccct
      481 ggtcttagtg tgagagcagc acttgagcaa tatcatgatt tttgtctctt ctatcccttg
      541 ttctttggca taaatacagg tacatgtttt ttgctgctat tatttcatta ttattagatg
      601 cacctttgaa ttttttatta gctgcaactt gattattgaa tgagaagatt tcacagaaga
      661 gtgacattta aacctgagaa gatcactcat agaaaggaat tgtgctattt atgtcaaaaa
      721 ttaattacag acatggagaa tc
//
LOCUS       KCLJ01003203             743 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 356760cal ultra-conserved element locus
            uce-7914, sequence.
ACCESSION   KCLJ01003203
VERSION     KCLJ01003203.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 743)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 743)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..743
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="356760cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>743
                     /note="ultra-conserved element locus uce-7914"
BASE COUNT          184 a          146 c          200 g          213 t
ORIGIN      
        1 ctccaacctt cggaggggcc aaggaggact gcatatctcc aaggcccatt cccacagggg
       61 tttgcaggtg cactccgtgt tttgctttgt gtttggcagt ggtggacatc ttcatgtgag
      121 agcttgcatg gaattggggt gggggcacgg taggtctcat aaatggggaa gccgctccaa
      181 gcgtgtgaga caggtacaaa ggagctggat actgaccgta gtaaccaaga ttcatcatag
      241 gcattgatgt gtaaggcatt ccatagggtg catagtaact cccactggga atagggtaac
      301 cgaacccttg taaaaaaggc acctttgtca tggtgtcatt ggttttggca ggtctaccac
      361 gcttcttctt agacttcata tcagaggtcc tgcgaagata gagcaatggg tcatactgga
      421 tatatggcac agggtagtag tgatcaaaat taatcctgaa gatgctggga tatggatttt
      481 catgataaaa tgtataactt ctatgggaaa tcctgaacac ttgaaactta ttgatgagtt
      541 cctcaaggtc tgccagaaac tggaggtcat ctctgttctg caggcttttc cttttcctct
      601 tgtgctttgg ctttttaata ctttcgtgag agagaaagtt atccacaatg agatgcttct
      661 gccggtgacc atgcctgttc tttgtgctgg tgtcagatgg gatagcctct ggattgtcca
      721 gggtgcagaa atcaaaggag tat
//
LOCUS       KCLJ01003204             726 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 356867cal ultra-conserved element locus
            uce-7790, sequence.
ACCESSION   KCLJ01003204
VERSION     KCLJ01003204.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 726)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 726)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..726
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="356867cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>726
                     /note="ultra-conserved element locus uce-7790"
BASE COUNT          253 a          110 c          143 g          220 t
ORIGIN      
        1 gtccattcag aagcaagtat gagtctgata gagacaaata tgtttttcag tgtggattta
       61 catacattta tggattagaa tcaggcattc ctcctttttt agtcagtgta ggtttaacta
      121 ggttaaaagg ttttcctgaa tattcatcca gatatttctt ttgaaataag cttctggttt
      181 aagttttgca caaattaaaa agtacataaa aactggagga ggagaggaga agggagttga
      241 aaagaaatta agtatattta agttttaggg cttacaaact cccaaatttg agagctttgt
      301 gaaattaaaa ggttagctat gaataaccac aatcaaatct tttcttttgt ccatatttaa
      361 ttcaaatgag attgctccat attgacttct aatgctaaaa ggccacccat catggaatcc
      421 ctgcagccaa tgaagcaagc aagtgaatgc tttcttaaat gatgctaatc agtccagaga
      481 ggcctgccct ctatccccat cagtattctg taattcagat gtgctgataa cctgaaattg
      541 aatgtgtcag tatgcagaca tgtgaagaaa aaaggaaact aaaaggcaaa agaggcagct
      601 atagagacaa tgcctgtttg acttttaagg gaagaataaa aggaatagtt agtagttgtt
      661 cttcaatgct tactgagtgc tatacaggag catacaaaaa attcataaat agaatttcca
      721 gatgga
//
LOCUS       KCLJ01003205             494 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 356979cal ultra-conserved element locus
            uce-360, sequence.
ACCESSION   KCLJ01003205
VERSION     KCLJ01003205.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 494)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 494)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..494
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="356979cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>494
                     /note="ultra-conserved element locus uce-360"
BASE COUNT          175 a           83 c           73 g          163 t
ORIGIN      
        1 aatcttggct tgttgtacaa taatagccct ttctcaacat gggaaaaaat tacagaccta
       61 actaatttcc ttgacagaga agagttacat atgttttcca cttggagttt ttacgacaag
      121 tttacaattt tgccagatct ggaactaatt gggaccattt ccaaaaatgg cccaataaac
      181 ccacaatgag tatagctagt ctaaaatgca gcaaatgatt gtttgctttc acaagattgc
      241 acaattattt catttaagtt acttaaacac ttactgtttc atatcctccc agtttttgag
      301 cagcttgaaa catagtccaa aggttaactg ttagagggac aataagtatt tagataagca
      361 ttgcattagc caacatattt caaagaaatg taaattaaac agttttaagc tcctgtgaaa
      421 cattttaaag aggtatttac ataatctgaa gagtaaatat tagcccatac tatatatatt
      481 tttaattaca tata
//
LOCUS       KCLJ01003206             395 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 357091cal ultra-conserved element locus
            uce-2927, sequence.
ACCESSION   KCLJ01003206
VERSION     KCLJ01003206.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 395)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 395)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..395
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="357091cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>395
                     /note="ultra-conserved element locus uce-2927"
BASE COUNT          148 a           78 c           69 g          100 t
ORIGIN      
        1 taagaatact gaaataaaaa tgatgtgatg gtgagaaatg gaaaagcccc ctccctcccc
       61 acacctcccc cttcaaaagg aaaagtgtag gctatagaag aaaacttgca aaataaatgt
      121 tagaaacata tttactttga gggatccaac tctactagca actcctttgc tttcatccgg
      181 ccgtctaatt tgctacaatg gaggaagatg ggtaaaaaag acagaagaat aaagaaaaag
      241 tgaacttaaa aaaatttcca cacaatcagt tagcagtaca tgcaagacat caatttgact
      301 ctctgagaca cctctagagg acaaagacac agactctaat ttctggaata aatgacgctt
      361 tatcatggca ttttaaactt gctttgttga tcact
//
LOCUS       KCLJ01003207             514 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 357200cal ultra-conserved element locus
            uce-1447, sequence.
ACCESSION   KCLJ01003207
VERSION     KCLJ01003207.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 514)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 514)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..514
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="357200cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>514
                     /note="ultra-conserved element locus uce-1447"
BASE COUNT          164 a          107 c           96 g          147 t
ORIGIN      
        1 gcggccagcc tgcgaggtga catggtcagc ctgatgaagc acacaaaagc tcttggcact
       61 gcatatctgc aatatcatgg acagtcaagg aggcgcctgt tataaaaata cacagtgaaa
      121 cacaactgga ggactgctct ttctcaaagg ctaacgtaat gcattccttc tgtttaggct
      181 cattttccag cctttcacat tctttgtgaa caagagttat aaaacaagcc tgatgcagtc
      241 caattatttt tactttgaag gccattaatc aagattgact aagaaaatga agacagctaa
      301 gcaaaatttc atatgtgact agagtgagat taaaataaaa ccagatgggg atggacagag
      361 acgttaagct gctttctctc ccccttccct cccccttttt tgactcatgt aataaatgtc
      421 ttttacaaat tacagcactc ttattttctt acagtaaatc aaattgggtc ataatgtaca
      481 agtggtctca ttgctgaaat gtcaaaaata gaac
//
LOCUS       KCLJ01003208             250 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 357308cal ultra-conserved element locus
            uce-4346, sequence.
ACCESSION   KCLJ01003208
VERSION     KCLJ01003208.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 250)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 250)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..250
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="357308cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>250
                     /note="ultra-conserved element locus uce-4346"
BASE COUNT           62 a           41 c           66 g           81 t
ORIGIN      
        1 aaaagtttca tttgtttctc tggtgtttgg aaggggagag accttttctt gctcctgctt
       61 ttgtgtgtgc gtctgtgggg gtctgtttgt ctcatgaagg tgcttgcatg tctaagagga
      121 agtgactagt ttggcagaga gctgtgatct gagtcaggta agccatgtca tgttctctag
      181 ctccaccaga aaatggagac aaaaatcaga ccagaaaaga actcttggaa atgcaatata
      241 gtcatttttt
//
LOCUS       KCLJ01003209             635 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 357398cal ultra-conserved element locus
            uce-4166, sequence.
ACCESSION   KCLJ01003209
VERSION     KCLJ01003209.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 635)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 635)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..635
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="357398cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>635
                     /note="ultra-conserved element locus uce-4166"
BASE COUNT          197 a          153 c          133 g          152 t
ORIGIN      
        1 gggaagcagc ctggctccgg gtgacacccg cacgcacaca cacgcactca ctccagcctc
       61 tgctactgac ctttgcctcg aacagcaata actcaccaca taaatgaaca atcaacggaa
      121 ataccttaaa ataaaatcca tcctttctaa cgaagcattt cgtcctctcg gctcgacaat
      181 aacctttcca taaggaacga aagctgtcag cgaaatggcc agctcttgtg gggacggtga
      241 tgggggcaga aaaaaaaaat aatagaaagc agtgcttgct ctgaacagaa actggaaaag
      301 cgtaatcgca gacggagcca gaccgggtct ccactccaaa tgccacaata atgcgctgta
      361 ttatgtgctc acgtggtcat acgtcaactt aaatcctttt atttgaaata gggaatcatt
      421 gaaggaacag ggtttcttag cgcgagcctt cgctttttaa agccttaacc caatatgtta
      481 aagaagagtt ttatgggact aagagatgca gatgactggg gggagattgg tctgattctc
      541 tttcctccca caccaatatt tctttacaca aaacccattg gaaggtaaga ggaatcctta
      601 taacgctgca ctttgatact tagcctaatt aaccg
//
LOCUS       KCLJ01003210             503 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 357507cal ultra-conserved element locus
            uce-997, sequence.
ACCESSION   KCLJ01003210
VERSION     KCLJ01003210.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 503)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 503)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..503
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="357507cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>503
                     /note="ultra-conserved element locus uce-997"
BASE COUNT          174 a           70 c           91 g          168 t
ORIGIN      
        1 aaaagtacta ctagacccat cagggataag taaaggctat atactataga ttattttaat
       61 ccccttgcta gatataaaag ggataattac atatttgtgg ttgaagccat gtggtggaaa
      121 aatcaataca acttttttgt atgacacttc attagtgtga aaaattttaa aagctgaaaa
      181 gaactgcctt gcaattaaat gcctctgcta tttcagattc agtaatgggt ttgtattatt
      241 atctagttta tttgaaatag tggttgcact atagcagtaa ttggaaaaca ttgattatgc
      301 gcttgtatat agaaaacctg gcaaatcatt acagggcata gcaacagtta gttagcctta
      361 ctaatgaagc actaattgct gtaagtaggt taacatgtta gtgaaactac agggagatag
      421 agctttgaga tctttttgtt cagtgttatg tatcaaatct tattttaaga aatctcattt
      481 tgaaacacaa accacaagac ttt
//
LOCUS       KCLJ01003211             625 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 357613cal ultra-conserved element locus
            uce-3943, sequence.
ACCESSION   KCLJ01003211
VERSION     KCLJ01003211.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 625)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 625)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..625
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="357613cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>625
                     /note="ultra-conserved element locus uce-3943"
BASE COUNT          209 a          123 c           95 g          198 t
ORIGIN      
        1 ctcttctagt aaatctcatt tattcacatc tcattttcta ataaactaaa atatgtcttg
       61 cctctgaaaa atttcatgca gcagacatga aagaagggaa tctgattcat ttttccactt
      121 ctacagtaag acaaggctta tttcacaaac accagcatta tacaagatac ccattaacat
      181 aaattattct ttctcagatc tgttttcctc ttggtattgc ttaagagaaa ccaataagta
      241 agtttttttt aagccaatga ttagtaatga ataaacagag caagtactaa agctgacttt
      301 gcacctactg aatgctgcaa gtgtctgtac tcgtttgata tgcatctagc aaagcttgga
      361 tgttcccaaa aggccactcc atgaacactg agagagcagc gtctgctagt ggtgcctgta
      421 agacacaaaa gagacagaaa atatttatat aagtgagagc aactggaaag aataacctta
      481 tttaatctat attccatgct attttaaagg cccacacaga aacaatttca tgcaatgatc
      541 atcgtatata gagagttgaa acacatttca gtatttactt gttttatgct ctccctcatt
      601 ttcatcactt tgcctgatag atcca
//
LOCUS       KCLJ01003212             413 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 357722cal ultra-conserved element locus
            uce-3790, sequence.
ACCESSION   KCLJ01003212
VERSION     KCLJ01003212.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 413)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 413)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..413
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="357722cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>413
                     /note="ultra-conserved element locus uce-3790"
BASE COUNT           95 a           93 c          105 g          120 t
ORIGIN      
        1 catcacccta aagctcccag ttctgtgcct ctcctgagca gccctgagtg ggattgtcag
       61 tgttttatgt atttacacca gcagagaagg cctgggatgg ggactttttt cgtttatatg
      121 agtctcagcg ccacaggggg tatttaactt tctgccctgg ttgctgtaat tctctctcca
      181 gtggatatac agttcagatc aggttcctat tgctgtgatg acaggcattc agcaggcact
      241 gtaattgcag agttaaaaca gctcattttc ttactggcaa gctgtagtta aagaggtgct
      301 aggaggcagc ctggctgtct gcagaggaac tgatcaaagc actgaaaggc atctggcttg
      361 tctctgtttt ctttcaccac cccccttgct gatggagggg aaaaagcgaa tga
//
LOCUS       KCLJ01003213             665 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 357828cal ultra-conserved element locus
            uce-1897, sequence.
ACCESSION   KCLJ01003213
VERSION     KCLJ01003213.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 665)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 665)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..665
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="357828cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>665
                     /note="ultra-conserved element locus uce-1897"
BASE COUNT          216 a          140 c          128 g          181 t
ORIGIN      
        1 aaacgcagct ttctggtgct gtaacaacta atttaggcaa gtatgccagt catgcactgc
       61 tagcccatga aagtaataag gatcccacgc aggccagcaa ttttcacaag caccacaaaa
      121 aattaggtga ccctacctct atcggttttc tcaccgtatg aaataaaatt tccatgtggc
      181 acttgtatct gatgcacagc atggtgattt atcaaagatg caaagagcat gcagaaacaa
      241 tctttattac atccatttcc tgcttgtcag ctgagatcat gttggctgtt cattaaagaa
      301 ctcatgcagg tgagaggaat atatctcgat accttgatag attgtccgct tccccactgt
      361 gacagccgct ggatggattg agcagcgggg aaaatgaaga aaagcgctga ctcgaaagct
      421 ctgctgtcag atatattttt acataggcaa ccatgtcatt tcagctaaac aaacatcacc
      481 tcagtgtaat gtattagata taaagcccta ccccccactt cctcggaaaa caattatggg
      541 gattatgttc gatgataatg taaaaatgta ataaagaatt aaaactgaag agcacggtgt
      601 tacagtcttg tttctatttt tgcatccatt gtgattacaa ataaagtaac caaccaacaa
      661 gacag
//
LOCUS       KCLJ01003214             423 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 357926cal ultra-conserved element locus
            uce-2533, sequence.
ACCESSION   KCLJ01003214
VERSION     KCLJ01003214.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 423)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 423)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..423
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="357926cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>423
                     /note="ultra-conserved element locus uce-2533"
BASE COUNT          121 a          102 c           63 g          137 t
ORIGIN      
        1 tggctttgcc tttacagtca gtagcagcca ttggttcagt catatcactc tacattccct
       61 ctgtggcttg tcaggtcatc accattcaaa gttggtttgc taattaactc acctcctatg
      121 ttgttcttgt aagtattata caactctttt actcttctgt aacggaaagc cagcttcctc
      181 atccagtcaa cccctcctct tacacctgtt ggcagacaaa ggtttgcact acttgcagct
      241 gcatggaagc catcagttgc aaaactgtag gtactgcaaa cacccaaaat acagtaaaaa
      301 taaatacaat gtattcctgt aaatgctcaa attatttcat ctaaaaaaaa atatcttacc
      361 ttaggtcttg tccattgtca tctgaagaaa catcatctat atgaacttga tcgcattcct
      421 gtt
//
LOCUS       KCLJ01003215             377 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 358031cal ultra-conserved element locus
            uce-3938, sequence.
ACCESSION   KCLJ01003215
VERSION     KCLJ01003215.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 377)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 377)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..377
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="358031cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>377
                     /note="ultra-conserved element locus uce-3938"
BASE COUNT          136 a           64 c           70 g          107 t
ORIGIN      
        1 atacattttt acagcctttc ctcaagtgat agaaacatca ggggaggggg gaaagggagg
       61 cagtttccag tatttgtcat tattataggt tatatataca ggaagaaagt taattaagct
      121 ttaaaaaatc catcacacat caatgggtgc attttaatga gtacaaaaag ttgagatgtt
      181 tactgccaat taaagtggtt tttaaataag cattaattaa cacggaaatt cagaagaaag
      241 ttataccttg tcaaagaaag gccagtgcag tctatgccca cttctgctcc cattcatact
      301 cagatagtaa ttaccaccaa ccctatattt tccataataa tgaggagagg ctgtcatggc
      361 tgtcaaacaa aaacaaa
//
LOCUS       KCLJ01003216             708 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 358139cal ultra-conserved element locus
            uce-1898, sequence.
ACCESSION   KCLJ01003216
VERSION     KCLJ01003216.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 708)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 708)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..708
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="358139cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>708
                     /note="ultra-conserved element locus uce-1898"
BASE COUNT          187 a          181 c          117 g          223 t
ORIGIN      
        1 gtgcagcctg gcggaataac aactttaaaa agtgaagatg tcgctttttt atagctgact
       61 cacatttata taactgtgtt aatgcatctg ctccctggaa gttacagtat ctgtgttcag
      121 ctgcgatacc tgcccataaa tcgtggcagc gcggcgaata tcaacagctg cattttacta
      181 tttcagcccg tcagtttaca ctgtctccat cacggcgaat tcctgtcagc tgcactctcg
      241 ctaacacaat tcctatgttt tgcctggcag taaatggacg ctcctgcccc agcatcatct
      301 aaacaactct gttaacattt gcccccgagc gtctctctct ttgtccagtc cctgtcttct
      361 aacagatgtc atccaagtct aatcaagcat aaaatggtca taaatatttc tttctggtag
      421 atttcacatt cgcatttcat gcagggacat gatatttttc tgctacctcc agggagtacc
      481 taatgcaaaa accagttact tacattcaag gctcatgttc ctttagtaaa atgcagcaca
      541 tgttctcagt tcaaagacat aaaaaggcgc aagacttttc ttttgtttaa ctgcaccaac
      601 aacgtgtgcc acagcttcca cctaggtatg acattgtcct ttgcttctga attttgaccc
      661 taccactttt tgaatttcct actcccatac cttaattatt gcacaaaa
//
LOCUS       KCLJ01003217             490 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 358251cal ultra-conserved element locus
            uce-124, sequence.
ACCESSION   KCLJ01003217
VERSION     KCLJ01003217.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 490)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 490)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..490
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="358251cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>490
                     /note="ultra-conserved element locus uce-124"
BASE COUNT          168 a           77 c          104 g          141 t
ORIGIN      
        1 taattaaagc atttaaaata atttacactg aaattgtatg tgcttgggtc tgtcaaaatt
       61 gatgctttaa taacatgtca tccctttttt cgattgccct gaaatctgtt aaaattacca
      121 ctaatctaat tgggaacaaa gttgtcaaat gcatgcagct ctgacagttt gtctttctgc
      181 aaactgccga cagattgcaa gttacgcatg tgttgagcag atgggtaagt taaaaggaac
      241 acaaaaaaaa gcaatttatt aaatcacctg gaaccagcag ctccattcca aaaatagtga
      301 gaatgaaata tagcaagagc taggagagtt ggcactggaa tatgccagaa ggtaccagtt
      361 acaaaacaag ataaacattt tgagaagcct cagctgtgtt gcagaataat gaggcgttat
      421 ttaacccgat atagattacc agcagaaatt aatttagggt gcagggtttt gtgagagtgt
      481 gtgagtgtgt
//
LOCUS       KCLJ01003218             591 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 358360cal ultra-conserved element locus
            uce-2183, sequence.
ACCESSION   KCLJ01003218
VERSION     KCLJ01003218.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 591)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 591)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..591
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="358360cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>591
                     /note="ultra-conserved element locus uce-2183"
BASE COUNT          189 a          104 c          109 g          189 t
ORIGIN      
        1 cagaagctga tagagaccac ccgagcgaca acagcattcc caacaaaacc ctggattttg
       61 attaaaacca tgaacttaca ggaggagacg atttagaaac tggtccaata aaaaggtggg
      121 agacaaaaag aagatttgga aacatttttt cctccgtata aattgtagtt tgtccctgtc
      181 cagtggactg attcactgtt tctgtgtcct atgggttctt tgttaagcaa gagaagttag
      241 tagttaatta tatcatgaat gtacttgtct gtgtacagtt tctagaacat taaaaagggt
      301 ttgtttgctt agctgtcaac aaggaaaaac ataagggagg cattcagcaa accagttttg
      361 agattaaaaa tcctttcttt tatattttca aacatgccca aaaatgaggc agttggcaaa
      421 cttctcagga caatgaattt ttcccatttt tctttctacg ccacacagtg cattgttttt
      481 tctacctgct tgtcttattt tttagaataa tttagtaaac aaaagtctcc taattttggc
      541 atgaattccc ttatttcaaa atgaagacaa ccttgcaaag agattttgag g
//
LOCUS       KCLJ01003219             377 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 358470cal ultra-conserved element locus
            uce-4388, sequence.
ACCESSION   KCLJ01003219
VERSION     KCLJ01003219.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 377)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 377)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..377
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="358470cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>377
                     /note="ultra-conserved element locus uce-4388"
BASE COUNT           83 a          105 c          124 g           65 t
ORIGIN      
        1 agtgctggct gtgcagctga gaccctttac acagcacatg ggacagagct cagaagctgt
       61 gctgttcctt tatgtccacc ccagggacaa acagtagtga ggcagtggct gtgagagcag
      121 cagccagaga acgcagctct ggcgttggca ctgctgaggc tctggcagct gtgaccttgg
      181 gactctctcc tggcagatta tcgccgccca ggaggagatg ctgcgcaagg agcgggagct
      241 ggaggaggcg cggaagaagc tggcaatgat ccggcagcag cagtacaagt tcctgccctc
      301 ggagctgcgg gacgaggagc agaactgagc cgcacgcgca cagactggcc cgcctgccac
      361 ctgctcctat ttaagac
//
LOCUS       KCLJ01003220             654 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 358572cal ultra-conserved element locus
            uce-6990, sequence.
ACCESSION   KCLJ01003220
VERSION     KCLJ01003220.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 654)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 654)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..654
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="358572cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>654
                     /note="ultra-conserved element locus uce-6990"
BASE COUNT          191 a          135 c          131 g          197 t
ORIGIN      
        1 gttcttcctg cgacctgggt tctaaccgtg ttactctaag catttaaaaa gatttctgga
       61 gcagaattgg ttaattagtg ctttgtgtta catatgaccc aaccagagat aaaaaggttt
      121 aaaggtctct tgtaaccctg caatgccatt tgtaacacaa aaataacccc ctttcattac
      181 tggcatgcca ctgtagcagg caggttattt tttcccttcg ctgcaatgag ggcagctttc
      241 gcatcagaag aattcttggc aaattaatgc gctacctctt gggctaatta aattagaaag
      301 gatcaaaaat acagagcagc ttttgtggtg gacacaatgt tgtgcttcat gcatcttgct
      361 cagagaggaa tttctgccat ttagcccctt tttgcctcta gcagcgttct ggactctcta
      421 acacagtcaa gttcctaatt tgcctcaatg agagagaatt attaactgat aataagaaaa
      481 ggagcattca cagctccagg ctgggctgtg tggaaaaggg tgagctacac agcacctgaa
      541 gcgcatgcaa tttttattaa ttcctgccta aaacaacgca ttcaggagta aaattgctgt
      601 gcaaatgaca aaaacaatta taattttgat tcttcggttc gaactgcttt atct
//
LOCUS       KCLJ01003221             567 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 358682cal ultra-conserved element locus
            uce-2561, sequence.
ACCESSION   KCLJ01003221
VERSION     KCLJ01003221.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 567)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 567)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..567
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="358682cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>567
                     /note="ultra-conserved element locus uce-2561"
BASE COUNT          194 a          114 c           77 g          182 t
ORIGIN      
        1 atcttttgta ccctgtggtt taatatttca tatagaaccc cagaagtact ttaattgaac
       61 cttcaatata ttttgctata atctttatgt taacaggact cctacaaagg ttccaggaaa
      121 gacatactta tgaaacagag aacaagggaa catataagcc attacagaag attggattaa
      181 aatgtactta cccaggcctc tcaaatatca tacatctcca ttatgtaggc tttaggcacc
      241 aagccaatgg ttcccttcat ttctcctacc caccagccaa atctattgta ctcctaattg
      301 aaaacaatac gcagtattaa cctttagtct gatataaatg caatagagtt ttgtatgcaa
      361 ctccttatgg atgctttccc ttatatatag ttataatcat ttcaactgaa aattaaaaca
      421 ttttatcttt ttgttatagg cattcacatg cagttaggca aaggcagaag gtaaatttta
      481 aaaaggcccg gcatactcaa gaaaatttct taattatgta acacctacta aaaatagccg
      541 acctccttat cctctgttta tcaaaaa
//
LOCUS       KCLJ01003222             518 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 358792cal ultra-conserved element locus
            uce-7678, sequence.
ACCESSION   KCLJ01003222
VERSION     KCLJ01003222.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 518)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 518)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..518
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="358792cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>518
                     /note="ultra-conserved element locus uce-7678"
BASE COUNT          152 a          104 c          116 g          146 t
ORIGIN      
        1 cccagcctca tggggtttgc aggaagaagg gatgagaaat aaaatgaata atgcttacct
       61 gctaggggtg ggtgaagact ataattgttt agcccccagc agatccctgc aagggttaaa
      121 aatgacaaag atattagttg gtgactgcta agattgttgg tttgaagctt tgggcaaaac
      181 acagactgtt atttaccgga cttggtcgat ttacttctta atgcaataat gacctgtgaa
      241 atgaaacgtg agctagacaa ttgttcctca ttgtttccag taaaacatcc tttcataccc
      301 cattaaacca ccattaattc catttgaaag agaagcaggc acaaacacca agggatagct
      361 ctcctttcct ttttcctctc gggactgatc aaggcctgtg gatggaatag ctttcttacc
      421 cattttagag ggtgttgggc agcctttttg aatgaacact gcagagatct actggattgg
      481 cacccagagg atcacattcc tgagaaatct ggctaata
//
LOCUS       KCLJ01003223             625 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 358900cal ultra-conserved element locus
            uce-3807, sequence.
ACCESSION   KCLJ01003223
VERSION     KCLJ01003223.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 625)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 625)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..625
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="358900cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>625
                     /note="ultra-conserved element locus uce-3807"
BASE COUNT          179 a          141 c          136 g          169 t
ORIGIN      
        1 tccacctcaa gaaacttttc cctgatgcaa aatcctggag gatttggtca ttgtgtctta
       61 tacactgtta aggctcacca ggcaaaagta ggctttctcc ttcacttttc ttttgggtga
      121 ttgaatatga agtccagctc actgcacatc cttatgtgag atagtttaac acggtacctc
      181 gaggctctgt ggtcccagaa tgcagcgcag ctcactggca gtagttcagc tgaagactaa
      241 acatttggct cagtgacagc agagctgcca agagttggca acaagagact cacagggaag
      301 cagcaggctg ctaaaccctt tcacattttt aattagatcc acacacccat gtctttgagc
      361 tatcataaat atacagatga catagagagc attatttggg gtaagggaaa aaaaaaggct
      421 gtactgtggt atctcttacc ttattaaaat aatttaccta cagctagtct ttggaactgg
      481 ggttgtgaca tttaactcag ataaaagtct ctccctgtct acagtcgaat tcaccctgca
      541 cgctgaagat gcagggtcct gagatgactg acacatcgcc ttagctgcaa tagcatcgcc
      601 agaagagggc attattggca gcaac
//
LOCUS       KCLJ01003224             513 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 359010cal ultra-conserved element locus
            uce-1029, sequence.
ACCESSION   KCLJ01003224
VERSION     KCLJ01003224.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 513)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 513)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..513
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="359010cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>513
                     /note="ultra-conserved element locus uce-1029"
BASE COUNT          207 a           73 c           64 g          169 t
ORIGIN      
        1 aaattggcac aaaaatgtta aacattgttc ccaacactgt tttataagat tattctaatt
       61 tggcttacta aggaaatgag agttttatgg ttagactaat ctcttaataa aactgcagag
      121 catcatgcta ttagtcacac agtgaatttc aaaatttaag agctttatat taaaaactgg
      181 gtaaaggtaa aatgaattga ttgcaattgt aaaattaata cattcccatt ttaattcttc
      241 tgttctacag tccaaggcaa gtataaatgt taacataaca ctgttaaatc aaatctcaat
      301 gcaagagaac cgattgcatc tctactttaa atcttatcaa ctttccaaat tttcatacta
      361 aaatatatta ttgtattaat acaaactaca gtattataca ctacactgtg taataaataa
      421 agaaatataa aaataagaca cataaatata aaagttttct aaaactaaaa aggtacatat
      481 gtcagtaaga agggtattaa tactgccagg ttt
//
LOCUS       KCLJ01003225             584 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 359116cal ultra-conserved element locus
            uce-2024, sequence.
ACCESSION   KCLJ01003225
VERSION     KCLJ01003225.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 584)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 584)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..584
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="359116cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>584
                     /note="ultra-conserved element locus uce-2024"
BASE COUNT          191 a          119 c           97 g          177 t
ORIGIN      
        1 aaaaactttg ttttgagctc cgattaattt tcatccttat gattgtcctt ccttgatttc
       61 tactgacatt ttagagccaa tgtcggctaa taaatagaat aacacgctca caggcacaat
      121 tcagattcaa atatgttcct cccactcccc cagccagtaa atgcaatttt taccagctgg
      181 tgattcctga acagccagtc atttttgaga atgtggcttt aacatacaga gcatcagcac
      241 tgaggcaggg ctggagctaa aacaaagtgt tcatacatac atgtattttg cataaataaa
      301 tgaaataaca agacataaaa atgactcaaa tccggcaact gtgaggcagg cccacacgag
      361 tcgaaacaga tgacttttgt tcatgtagtt ttcgtacaac agtttcacat tagtcagaag
      421 tgataaaaaa taccatttat atccagtgct tataacactt acgaaacaac atctgtgagt
      481 gtgttttttt ttgtactaca agcaaaatca agtttcagtc ctaaagaaca gtcctttgtt
      541 ctccacaagc ctgcagaata ttattttggc atggtcataa aatt
//
LOCUS       KCLJ01003226             495 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 359226cal ultra-conserved element locus
            uce-4035, sequence.
ACCESSION   KCLJ01003226
VERSION     KCLJ01003226.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 495)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 495)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..495
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="359226cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>495
                     /note="ultra-conserved element locus uce-4035"
BASE COUNT          162 a           88 c           88 g          157 t
ORIGIN      
        1 atacaaatgt taaatgatag tcaaataagg acatatatga aatactaagg atactctaga
       61 aactttctct tgtattttta tttaattgct ttcgacttgt aacaatagga aagtactggg
      121 ctgtggaaga acagcacttg cctgaacaac agacgatgta tctattatct cacttccatg
      181 aaggtcatcg acctatgaca gttggagtag cagaaacatt agaaatcatg tgcaatttaa
      241 tctttacaca aataaaggaa aagtatcaca atgcctgaat aatgaagagt ctctcagaga
      301 aaaagaaaag tctgtccctg aggatagtct tcattttctt tcctgaactg ttccaatgcg
      361 ttcacactat gagattcact cactgtgctg acacacgtat taatagtatt ttggctggaa
      421 gagtgtagat gttctaaagt gattgcaaag tgcatctgtg actcagttct cctttcattc
      481 attcattact tcttc
//
LOCUS       KCLJ01003227             754 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 359330cal ultra-conserved element locus
            uce-6233, sequence.
ACCESSION   KCLJ01003227
VERSION     KCLJ01003227.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 754)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 754)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..754
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="359330cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>754
                     /note="ultra-conserved element locus uce-6233"
BASE COUNT          237 a          155 c          154 g          208 t
ORIGIN      
        1 gaaaattaaa acccattaat tacagcggta gggatcttga gggttgctct agataaagca
       61 gttaaagaag ttgcaaaaga tgaatctcta atcatacttc ttgaagtgca aagataaaaa
      121 tacaactttt gctccttaaa taataatccc gatctaaaaa gaacctccta aaaacttcat
      181 attttatttc tatacaatcc agattggtca cctaagagta gcataattaa acaatgttag
      241 gcatcccaac cccttggaga atgtgctgct taaaaatatt tttagaacaa tcactgtagt
      301 aattcttctt agttgtagaa acactccaaa tcagaaagtc aatttttcct ctatttgcag
      361 aagtgtgctg gttttcactg gaaaggcgcc tgtgttttgt ttggctgctg ttcatatact
      421 gccttggcag gatttccttg gattgcttac agtgaacatt gctcttgcat acagtagcac
      481 tcccatttta accgtcccag ccacacgttt tctaataaca cacggagagc tgcaaaatcc
      541 ctataagcgc agctctttaa agcagcaaca gaagggggtg ggggcggagg accggagggg
      601 ggaggctctg cccgttcaaa atccagcgct gcaaacagag gagagtcctt ttaaaaacaa
      661 ccaatgtgaa ttgtgtttaa ggagcagctt tccagggaaa gaatcatctc cgagaagatt
      721 cagctgattc accgaatctg agctgcacaa gctg
//
LOCUS       KCLJ01003228             665 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 359440cal ultra-conserved element locus
            uce-4430, sequence.
ACCESSION   KCLJ01003228
VERSION     KCLJ01003228.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 665)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 665)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..665
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="359440cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>665
                     /note="ultra-conserved element locus uce-4430"
BASE COUNT          143 a          139 c          118 g          265 t
ORIGIN      
        1 catttgttta tttcttcatg gtccaaaact gtttaatcat gtgtaaccaa actctgtatg
       61 agatatttca ctcctgagaa tatgatgatg gtaggtaact agactctgat ttccactcta
      121 gctgtgggta tttatgttgt caagcggtgt gatgtgaagt gcagaagctg ttctgtcatg
      181 gcaaatacaa acttgatttg tggtcctttg tccttctgtt ttctttttca gttttatttt
      241 ttagagcctt acctgtcttt ttcccttact ttattctctt tctgtacttt ctttcccccc
      301 taaatacttt acttactagc taagcctggc aaacttctgc ctttggtttc aatcagtcag
      361 gaaaaaaaca gtggaaccca cattctaatg ataactgaac tgggtaagaa gtgccttttt
      421 ccttcacatc actgtgttat gttgtgtcat cagcttttcc tttatttatc tggctgtatc
      481 agaggggcta ccctcatggc actgctttga atgtgtttta tttgtggttc tggttgaaat
      541 tgactgtctt gttctggtct tcttaatgat tttttttcac gcagcatcag taaaactttg
      601 atcacactcg tctgacctgc cggctgtttt catagcacct cctcaccaat tcattttttt
      661 tggcc
//
LOCUS       KCLJ01003229             752 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 359551cal ultra-conserved element locus
            uce-2512, sequence.
ACCESSION   KCLJ01003229
VERSION     KCLJ01003229.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 752)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 752)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..752
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="359551cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>752
                     /note="ultra-conserved element locus uce-2512"
BASE COUNT          228 a          166 c          101 g          257 t
ORIGIN      
        1 tttcctcttt tactctgtgt cattagcaaa atacaaaatg ctgtaagtgt tattccaatt
       61 tttatattaa gcatgaataa atgttagatt cacgtcatga aagacataaa ctacacttgt
      121 ataatctcta tcaaggaaca cattagaata gaacattcag cactgtttgc tgtctacttc
      181 ataggcttat atttaattaa gttatgctgt tcctaaaatt caaaaagctt aatctttttc
      241 tgtccttaaa ttaaactccc tgtgctctac aatgaccaaa acaaataatc tatgacctac
      301 aaacaagaca cttgcattcc ctgaagattt acctcatctt ctcctctagg ttatacatct
      361 ttgaacctct cttttctgta atgaccttct ggtgctcatt agcatgctga ttaccattaa
      421 cacagctata atcaagcaat tttcttggtg tatgtcgggg agaaatgctc atcagaatgc
      481 agccaaggga caaaattaac tgcataaatc tacagcacaa actggatctc atccaacttt
      541 agtcttcctc cttctgctag gtgtgacatc accatgatgg cctaataagt atccccaggt
      601 tccacactat ttaatttacc ccttctctca gttttacagt tccagagata gctgaccacc
      661 ttgcagtatt ttctcctaat atatgtttgc ctttacttct gtctcttcta attagtcatc
      721 aagctacagg tacaaggatt atacaaatgt at
//
LOCUS       KCLJ01003230             628 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 359662cal ultra-conserved element locus
            uce-6010, sequence.
ACCESSION   KCLJ01003230
VERSION     KCLJ01003230.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 628)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 628)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..628
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="359662cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>628
                     /note="ultra-conserved element locus uce-6010"
BASE COUNT          137 a          115 c          172 g          204 t
ORIGIN      
        1 agaagttgag agtagagcac aaggggaaga gagtgaaatg agctagtaaa gaaactgtat
       61 tgttgatagt gcttgtctga acttcaaggc cttggtgggc cattttggga gacaaggagt
      121 tagttggggg tggaaagact ggagtttgta ttctttctgc tctgttaccc attgctatct
      181 tcatggatct gacactctgt ttatctgaca gtgcactcag tactgcttcg ccagggaaaa
      241 ttgcacaaaa caagcctagt gcatcagcat tttcattgtg tattaagctg agcctccctt
      301 cacatggtca catccccttt ttaatctggg attccatgtc cctttcccag tccagcctgt
      361 ttctgtggtg tctattgctg gtctccctga gcttctgttt ctgtggtttg agtgtttgtg
      421 tggctgagtg ttaagacctg caggactttt ggaagtggtg ttgttggggg gttaggcagt
      481 acattgattt agtggtagga gtttgtcaga gactgaggtg atggccgcgt tcaagttgga
      541 tttcctccca gagatgatgg tggaccattg ctccttgaat gcaagccctg tgtaagtatt
      601 ttaaaatgat agctggaatt gctgtctc
//
LOCUS       KCLJ01003231             716 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 359774cal ultra-conserved element locus
            uce-1884, sequence.
ACCESSION   KCLJ01003231
VERSION     KCLJ01003231.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 716)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 716)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..716
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="359774cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>716
                     /note="ultra-conserved element locus uce-1884"
BASE COUNT          240 a          137 c          114 g          225 t
ORIGIN      
        1 cacgtaatga ctggaaaatg ttatacccat aaatcatact accacgatca tcaaaatttc
       61 cactcagcca ggacaaattc aacagcattt atgtctttcc agcttttagc ccataaaaaa
      121 tctgtgtttt tggagactgt gttacactgg tgatcttaaa actcccaagt ctggtataat
      181 gagtcctcaa gtgcgttata acttaccagt aattacattt caacatttct gctttcagca
      241 gttagtgttt tattcataaa catttaaaca ctgaattagg catcaaataa gaatgttggc
      301 aacaaccggg cttaatttca ttaactatta ggtaaacgta gtattgcttc ttcaaataat
      361 ccttggtttg aatgctaaag atgtaatgaa cttcatggtt catagcatct gacattgctt
      421 aattaatggg tgcatttata gtacataggc ctcggtaatt gatttatatg catgatttgc
      481 acatacagct gttagttcct gtaggaaagt cataattcaa atgtgtgcat atatatgggg
      541 aaacccacct cacaaacttg tcaagttccc aataacaaac taatagcaaa agaaatataa
      601 atagcatcac taccagaaga aacattaatg tgatcacgtt tccacagctc acacttttca
      661 agtggaaaac atgacaaaat gcttctcagc ctctttacag tagatgtggt taagtc
//
LOCUS       KCLJ01003232             567 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 359884cal ultra-conserved element locus
            uce-1468, sequence.
ACCESSION   KCLJ01003232
VERSION     KCLJ01003232.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 567)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 567)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..567
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="359884cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>567
                     /note="ultra-conserved element locus uce-1468"
BASE COUNT          174 a          108 c          104 g          181 t
ORIGIN      
        1 gggcacagca gctcaacgcc aaataaaacc ctgctttgct tctcctctct ctgggtgtca
       61 cccatcagat ctgctcaaac tgctttgcta gccagatttg taaccatttg catgaattct
      121 ttacattaag aaatactaaa gccaacatgt tttcttgtgt tacacagaat cctaatgcac
      181 atccacggcc gacctcccag gatttagcag ggttttggga tatgctgcag ttgtccatag
      241 aaaatattag tatgaaattt gatgaacttc atcagttaaa ggccaataat tggaaacaga
      301 tggatcctca tgacaagaag gtagaacact gtagattttg tatgcttcat ttaaaaccct
      361 gcacaaatac tggacagatt aaataggcct ctgtgttaca gcgttgacat taaaaatgaa
      421 gctcatatca aattaatttc gttgtaatga caatgtttac ataataatca tctgggatat
      481 tatctgtaat atgtttcagg catattttta aaccaaatct gtctttgtga atcggatgat
      541 gggtatgtgg tactttgtta agcttta
//
LOCUS       KCLJ01003233             623 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 359995cal ultra-conserved element locus
            uce-4348, sequence.
ACCESSION   KCLJ01003233
VERSION     KCLJ01003233.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 623)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 623)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..623
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="359995cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>623
                     /note="ultra-conserved element locus uce-4348"
BASE COUNT          197 a          127 c          124 g          175 t
ORIGIN      
        1 gaagacaact ccatccaggt tatattggag aaaggctctt catcaagtaa cagcggtgat
       61 caaagtctgg cagttgtacc ttatctgttg gggatcataa ttcaggaatg gagctgccct
      121 tcagttggct cctccccacc attaaattac attcaatcac cgcacggaga atgcagccca
      181 tgcgctcgca gccagatgtt atcattacag gccttttctt ataaactgat gctgaaaccc
      241 gagtggttga tgagactagc taagcagttg tacctttgac ctgattgcat taaacttgcc
      301 ctatcaattt aagcttagta taaacaccat ttcccagagt ccctcatgac ttcagtagtg
      361 agaagaagct gactaagcct aaacattttt taacagcaat cttgtcttac aacaccaagg
      421 ggatttgcca tgtatctggg gctttataaa accatatgaa catgctgaaa gaattaaagt
      481 cctttaagaa agcaaaattg atggtgacag tccttttaga aaatcagttt gtagaatgtc
      541 agcacaagag gagttggaaa caggactgaa atagctttta aaaatacaat agatttgtgt
      601 ttgtttcaca ccgaatactg aaa
//
LOCUS       KCLJ01003234             967 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 360104cal ultra-conserved element locus
            uce-1376, sequence.
ACCESSION   KCLJ01003234
VERSION     KCLJ01003234.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 967)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 967)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..967
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="360104cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>967
                     /note="ultra-conserved element locus uce-1376"
BASE COUNT          252 a          187 c          204 g          324 t
ORIGIN      
        1 cacgtgcctg gcctgggaga tgagcagcgc tctggaggac cttggaaatg ccacggcttg
       61 cctggtgccc ccagacgggc tctgcaatca gctgctctcc agccgcacgg aacaaagggc
      121 tgggccgggt cggggcttgt cgcgatttct gctccctttt ttacctgctg aacgttcctg
      181 cgtgtttgac cctttcattt tagctttacc tttctttgtc ccctgaatga ccggcataat
      241 tcatctgatt atctattatc ttgttattgg acataaattt tacaagctgt tgagagtgcg
      301 gaaaatcaat accttttaaa tgctgtttat gtgtgattaa cggttaatat cctcacaaat
      361 tatttaatgt aataaggtca tttatctttt gcatgggctt ggtatcctgc aaagaataat
      421 agaataataa atgaggacac tggtaaagag gatatttcag atgcttttct gtgccagttt
      481 tattacccat atcctcttta cagccacaaa gctgcactat ggttatttta tgcaagtaat
      541 aaaattagcc tgagatggaa ttagcagact cggggctctt tataggtcaa gtcggtgctt
      601 tatgagcctg cgactcccta gtgctatcgt catgaggcta gttagagggg tctttaagca
      661 tgatttaata tgtccatgct tcagaaaata gttaaatagc taattaaatg gaggagttaa
      721 tttacatatt aattgacctt ccagtaatat ttatattgat acctacatga gaagcccttg
      781 tcttcattgc ctttcatcat agttagtctg agcaaatatg gtggaacttt tttgtttaaa
      841 ctgaagtttc tctttattgt cacaggagag ttgttgtatt cccttgaata gcatagtaca
      901 tctggcctca agtttatgca tttgctgaag ccctttgttg tagaataatt aggaaacaca
      961 gtcaaat
//
LOCUS       KCLJ01003235             624 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 360206cal ultra-conserved element locus
            uce-7351, sequence.
ACCESSION   KCLJ01003235
VERSION     KCLJ01003235.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 624)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 624)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..624
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="360206cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>624
                     /note="ultra-conserved element locus uce-7351"
BASE COUNT          204 a          108 c          127 g          185 t
ORIGIN      
        1 gagatgcctt gttgtctggg atggataata aggcaactct gtctaatctt ggagaacaat
       61 cagcccatct tgagaaggtg actgactacg tatgctcttg ccctgacagc gctagaacaa
      121 tgcccccata atgcacttga ctcagctggt aataaaatct acttttgatt agcagccatg
      181 gcttgtgtca atcactgcat gatgtaccat tgtcctctgg tcctgaacac agtttattta
      241 cagggaaaca aaagcttttt ggatatggct gctgcccaga gattgcaaaa tagattgagc
      301 tgtcagcctc acacactaga tgaagattaa tgagttgtgc agacaataaa tatgaagcaa
      361 tgaccataaa tatgctaata ggtattatcc atatacacta taattgctac aaaaattaaa
      421 aagtagtgta aaggaaatag gtcagagggt gacagataga taatcttgga tgctgaagat
      481 ctttggttca gtcagattct ctacaggttt atttccttca attagaccct tcaaaagatt
      541 aattgtttaa aagctgtttg aataatctct tttgaaacag aggtttatgg gaaaatgttt
      601 atgaaaaagt gacttcaatg aaca
//
LOCUS       KCLJ01003236             617 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 360316cal ultra-conserved element locus
            uce-6915, sequence.
ACCESSION   KCLJ01003236
VERSION     KCLJ01003236.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 617)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 617)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..617
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="360316cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>617
                     /note="ultra-conserved element locus uce-6915"
BASE COUNT          226 a           99 c          112 g          180 t
ORIGIN      
        1 ccacatggta tctattaaat ttataaaagc ctatgcatta aatagttctg ccccagagaa
       61 acaagttaat tactaaataa tttcaatgaa aagtgcaata ctagcataaa tcacattaaa
      121 tcatacttaa tggaccataa tggaagaatt aagaaaattt cttccataga aatagtttgt
      181 tacaacatac ggaaaaatga aaacactgtt tagtgtttga gataaaaaca atcaaaggta
      241 atcctttaaa attagggttc agattagtct ctgcaaggga tgctgtttaa ctgaaacatc
      301 tggtagtgtt atgttgagag acaggccttt tttaactttg gaaatgagat tagtagatca
      361 gttatttgta agtgtccaag taatttctaa ttattttatc tgggtcacag ataatccgct
      421 tttacagggc tcccacaatg acatcagagg atcactgttg aactgattat cctgttacct
      481 tccaccatcc atgggaagac cggagagaaa gagaaagaag tggctgattg cttcagacag
      541 gtggcagcca acaaaataaa gaatactaca gttcttgaga ggaagaaaat ctcatctatg
      601 caaaaccagc ttttaaa
//
LOCUS       KCLJ01003237             520 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 360422cal ultra-conserved element locus
            uce-6232, sequence.
ACCESSION   KCLJ01003237
VERSION     KCLJ01003237.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 520)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 520)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..520
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="360422cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>520
                     /note="ultra-conserved element locus uce-6232"
BASE COUNT          182 a           88 c           99 g          151 t
ORIGIN      
        1 tggtaattag attttatctt caagaaaagt cactttgact ttaaaagctg aacaagtcct
       61 aaatgagctg ctgtttatgg tgcatctatg actgaatgaa gcactcttct gttcacatga
      121 agttcttccc ccactccccc tgaacagagt tggttggtca agttgatctc ttgtttgaaa
      181 ttcaatcaag ggcattaaag tgtaaaccag ttggaaaaac aaattgctta gggaaataat
      241 ttgcttaaac aacaacaaac aagcactggt aatcttctta cagaaattaa tgaagggaaa
      301 accccctcag cttgggtgga taatgatcct tagctatcat gtaacaagcc tagaaggttt
      361 agggagaagg tgaaaattaa gaaagctgga ttaaactgaa tttccaaaag aacaaaagaa
      421 attcaggata aagatcagtt ctcccacttt gagattgaaa agtagttctg aactgtaaag
      481 agcctaatcc tttatgcaaa tctggtttaa agttaacttt
//
LOCUS       KCLJ01003238             707 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 360530cal ultra-conserved element locus
            uce-3304, sequence.
ACCESSION   KCLJ01003238
VERSION     KCLJ01003238.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 707)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 707)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..707
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="360530cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>707
                     /note="ultra-conserved element locus uce-3304"
BASE COUNT          239 a          123 c          156 g          189 t
ORIGIN      
        1 gtttttattg cttggctgca atgtcaaaac tgggttggtt taaaatattt atgacatgag
       61 agaaagaaaa tctgtgaatt actcagaact taatgtacat actcttaatg tgtttcacat
      121 tttctttagt tggggacagc agagtgggga attgaggata acttgtttac tgccaaacag
      181 gtctctgtag tacctagttt tcctatgtat taaaaatcat gcctggggcc aagaatcctg
      241 gggctggaat taaagacgag aatacacaat aactgtaagt aatggcagag agatttaaat
      301 agcacacatc agcagaaaag aatggggaac ctacagtaca ctgacttcat tgatacccca
      361 tttatcagca attactgact ccattaaagg cagagtttac agcagacaga gaaacagagc
      421 ctaaaatatg tcccaacaga tggacagaga gtgtcagtga tgccgtattt caaaggcatc
      481 tgcaactttg ttatcattgt acatggagtc agaaagacag tgaaaaacac tggagtaagg
      541 gccagcaaat gatttacttg accctgcatg ggcagaactg acagcaaaaa cctcattaat
      601 tcctcaggtc attctggaag acattaattt ggtttggact tgggacgaga ggagattttc
      661 cagacataca ccaggaatta tgaaatctct atagccagag gaaagta
//
LOCUS       KCLJ01003239             453 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 360642cal ultra-conserved element locus
            uce-5263, sequence.
ACCESSION   KCLJ01003239
VERSION     KCLJ01003239.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 453)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 453)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..453
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="360642cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>453
                     /note="ultra-conserved element locus uce-5263"
BASE COUNT          148 a           89 c           92 g          124 t
ORIGIN      
        1 tagctgcagg caaagggaga ccgcacactt ccccacctct ggcgtggaac agaattaagc
       61 attaactctg tagcagaccc ctgcttatca gcaaccttgc tattactata ccaaccctga
      121 tgtgcataag caatattttc atccacttcc caagagattt atctagctgt tgaagtagaa
      181 aatgaatatt ttacagttca cttgtctgat caattaccta caagctgctg cagtatttta
      241 tagccagtgg gagagctgtg taggtgatga tagagaaatc tggagggaat ctgttagcca
      301 acttcaaaaa ggggactaaa actgtgaata agccatcagt aacaatcctt ttgttcataa
      361 gggtctagcc agaaattaca gtgtaaccaa ttaaagtaca taaatgataa tcagcagaat
      421 gtgaattcca gaggtgaaga aatttgattg ctt
//
LOCUS       KCLJ01003240             528 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 360752cal ultra-conserved element locus
            uce-2230, sequence.
ACCESSION   KCLJ01003240
VERSION     KCLJ01003240.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 528)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 528)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..528
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="360752cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>528
                     /note="ultra-conserved element locus uce-2230"
BASE COUNT          177 a           70 c           82 g          199 t
ORIGIN      
        1 agacattctg gtttaatgtt tctctgactt tttaagctct gattctttaa acttgtttga
       61 gtttaggcca gctaaactac ttctggaatt gatctctaag aaggaaaatg cctgagaaca
      121 tgtaagttat aagtggctgt cttatcttta ttacaaaata ttgtaacaaa ttcaatatcc
      181 tagtcttcat ttgtatgaat ggtttgtatt gtacataatt taaccagtgt tatttgagct
      241 gcttattaat attaacttgt aattgtctct ctgcttgtta ttgtttaaaa caatcaagga
      301 aatgaggaat ccattttatc aatgtagctg taaactccat taaaagacag aactatgtac
      361 aaagcattta ttcagctaaa gtattgttga aagctataca tatacaacat tacagtctgt
      421 ctgtatttag atattttatt tccagaggaa aaaatgaact gtacataaaa ataaaatctt
      481 aaagttgagt ttcaatatgt actgtgtaga tagtagttta aatagttc
//
LOCUS       KCLJ01003241             426 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 360859cal ultra-conserved element locus
            uce-828, sequence.
ACCESSION   KCLJ01003241
VERSION     KCLJ01003241.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 426)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 426)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..426
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="360859cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>426
                     /note="ultra-conserved element locus uce-828"
BASE COUNT          132 a           78 c           58 g          158 t
ORIGIN      
        1 aaaattaact tttctcccat tatgtaatgc atataactaa acttccttcc tactgtgaga
       61 cagtttcatt tattgttatt tgtaaacagc ttagtaaaga tgcatagtgg attggtctag
      121 aaactccttg aacagtttct tttgaaataa cactacatac gttaagctca attacacatc
      181 caaacagcca caacacactt ttggtaattt attcattgat ttaacatagt acccagaaga
      241 gtcatgcctg ctgtcaattt tgtaatatat tatgttttaa atatactcat gctcacccat
      301 gcacgccatt aaggtgtgca taaacctgtg tttttctctc ttgacagcta taaatgtttg
      361 ttattattac acaaaacata tgttcatgtt gtttttgtct aaattattct atctggggct
      421 ataaag
//
LOCUS       KCLJ01003242             762 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 361065cal ultra-conserved element locus
            uce-2389, sequence.
ACCESSION   KCLJ01003242
VERSION     KCLJ01003242.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 762)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 762)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..762
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="361065cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>762
                     /note="ultra-conserved element locus uce-2389"
BASE COUNT          242 a          169 c          139 g          212 t
ORIGIN      
        1 aaaataaggc tgttattgta tgacttttaa agtgctcatg tagattaata ttctcacccc
       61 ttaacagctt tagacacatc agcatgaaca cagaaatgca acaagttgaa aattcaaagt
      121 acatttacta gtgtatttta tgccactcac attttcagtc agaccaccca gagcaaagaa
      181 aagaaaaagc cacaacaaaa aaagccctct gcattgtttg caatggaaat tgagtgtata
      241 ttctcttctt cctgtatttt ccagctagat taagctgttg tcttcacaat tgcctcccag
      301 ctgctgtgac ttgtgaaaac aacagaccct gctctgttgt ctgcagaaag cctggattgt
      361 tatgagtaac tttattgcag gcacatgagt gtgttaagac tttaaaacac gctcaaatgt
      421 catgtgcaca cccagtgacg ggcaagaata attatgaaaa aacaagaatt ctatgtctac
      481 gaaacagtgt cagacaaaat gggccattca ttgtgttcct ttgggaatgc ttggactctc
      541 cagccagaaa acaaaaaagg cacttttttc ctgccgtagg ctgaatactt agctttgcca
      601 tctgagccct aagaaaacat gggccccctc tctaactact ggctggcccg cacacagtaa
      661 aaagtattaa tgtccccctt ttttccagca gttccctctg tgtaggctgc ggccaatgta
      721 aagtcaatgc aaagacaaaa cagtttgcct aacattagta aa
//
LOCUS       KCLJ01003243             632 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 361177cal ultra-conserved element locus
            uce-4097, sequence.
ACCESSION   KCLJ01003243
VERSION     KCLJ01003243.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 632)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 632)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..632
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="361177cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>632
                     /note="ultra-conserved element locus uce-4097"
BASE COUNT          211 a          118 c          124 g          179 t
ORIGIN      
        1 tctgtgagca cagatttacc agtatggtgg aaatcagagc tcttttgagg gttttttctg
       61 cagtgtattc aaagtgatca taaatcaagt cttgaattca aagacaatta aggacatagg
      121 cagtagcctg agcaatgcta acccaaaact ccaatcattt ttaaagtaag tggggagaac
      181 actggtcaac taggcgattg ttggtatccc ccaaaatgta atctccaagc tgaagaatgg
      241 cagctggcag aacagctggt gaataggatt aatgtcagaa gaaagaaata aaactcaaca
      301 tatgtccaag cctgcggtgc tgggactgag catgattgta ccccgacgga taccatgtgt
      361 acagctggaa agtgccactg tgccatgctt ctctacccca caaggtcatt tctaagaagt
      421 atagctaata tctgttttcc ttgagaactc tggctgatta ggcttcgcag tgtaaatatt
      481 ttggccgatt ttaataatac aatctcaact aaaaagaaga ttagtattaa aaaggacaga
      541 ttgcactaat gtaaatataa ttttaaagct atttaaacct tttaatctca tctcattcag
      601 atttccacat tcaaggttca aataatacca aa
//
LOCUS       KCLJ01003244             625 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 361287cal ultra-conserved element locus
            uce-5601, sequence.
ACCESSION   KCLJ01003244
VERSION     KCLJ01003244.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 625)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 625)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..625
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="361287cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>625
                     /note="ultra-conserved element locus uce-5601"
BASE COUNT          158 a          138 c          117 g          212 t
ORIGIN      
        1 ctctctgatt aatgatggtg tgctgtcact gtgtcatttt ccttgccctt gtagtgggat
       61 aacatgcaat tagagactga tgtcagcctg taaaactttg gtgtaaaatt ttggtcgcac
      121 caaaatacca tacttcttaa caaagctggc agacatgtcc tttggcagca gctgcttgcc
      181 atgtgattta aaacttcctg tcactataat tgatgtgttt ttattctttc cacttcctga
      241 agcctgatca gaattaaaat tgctgttgga atttcctgtc aaagcaactc atttattcgc
      301 cgagcgctgc actgacagta ctttgattgg acattgcctt cagctattct cgggcagaga
      361 gattgctgtg aattatgctc cttgcccagg tttgacttcc ctgcatgcca catctgcaaa
      421 tatatacaga ttgtccatca tgtggtaacc ttgtcctaat gaaaactcca catgtaaaat
      481 gttagatttg aatatcaaac ttggccacct gctggggccc tggcttttgt gtttatttag
      541 gaaacccctg aattcttcaa ttgattgtct cactgtaact ttcatgttac ctaccaaaaa
      601 gagctctgct atatttctac actga
//
LOCUS       KCLJ01003245             395 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 361398cal ultra-conserved element locus
            uce-1041, sequence.
ACCESSION   KCLJ01003245
VERSION     KCLJ01003245.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 395)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 395)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..395
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="361398cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>395
                     /note="ultra-conserved element locus uce-1041"
BASE COUNT          133 a           74 c           59 g          129 t
ORIGIN      
        1 ttttgatcct gaaaatctgt agccgtgtca tcagctcctt cttaattata ccgtattctt
       61 tacatctgtc ctgctaaata actctaattg aaatagcacc ggcgtgaatt ttcgtaatgt
      121 tccccccaag acatcccgaa agtgactcac acgagaaaac agactgaagt cacagctgga
      181 agcacgtcaa ggatcatttc catttttaca tgattaattt gaatttaata tcttaaatca
      241 aaacctgatt aatttaaata aaattttgat ggtgccctgc ttctaatata cattgcagta
      301 attagattca gcttaatgtg atttttttac ataattaaaa aaaagagcaa gtcaagtgta
      361 acaatgcaga gttggtacaa atctgtccat atata
//
LOCUS       KCLJ01003246             585 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 361505cal ultra-conserved element locus
            uce-7816, sequence.
ACCESSION   KCLJ01003246
VERSION     KCLJ01003246.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 585)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 585)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..585
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="361505cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>585
                     /note="ultra-conserved element locus uce-7816"
BASE COUNT          184 a          120 c           93 g          188 t
ORIGIN      
        1 ttactcaagc attgaggaga aagtcatttg aatatgtaca tcttatccaa taaatactga
       61 gtataatgca aacatcttaa ggggtagaca tcaaatacag ttttgtagct tgattcaatg
      121 agcatgtaca ttcacctctt aatttattta ctcagagctg ttccactaac tcatcagata
      181 aacaagtaca tcccaccagg cagtgtcagt ttttagcagg tgtgcctgaa ggactcttcc
      241 cttctgctct ttgaatcatt ctgtagacac taatgagcat ccctcttcag ctttaattat
      301 tggtccctga caagtcaaca taataggaat cagcttaacc aagcatactc cccagtgaca
      361 tgttcaatta ctcaggttgt acttctctgc aagaggtctg aggggttgct aatttaacaa
      421 aaaaataaac agaggtattg gttaccgttt atcttttgac ccttatgtca ccaaatctag
      481 caagatacct cctcctggaa tggagcagaa gattaaatac ttcaaagtta ctattctgct
      541 tttacttttt aaataacatt aattactacc taaagtgatt tacat
//
LOCUS       KCLJ01003247             767 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 361612cal ultra-conserved element locus
            uce-889, sequence.
ACCESSION   KCLJ01003247
VERSION     KCLJ01003247.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 767)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 767)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..767
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="361612cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>767
                     /note="ultra-conserved element locus uce-889"
BASE COUNT          229 a          137 c          163 g          238 t
ORIGIN      
        1 aaaaagagct ctttgggaca tcatggagct tttctcaaac agtccatcaa ggttatgagt
       61 aatgtgtttg agaacttcag taaggacggc tgggaggatg tgagtgaaag caggtacggc
      121 tctcattaac ttagccctgt agaggggaca ctgtgcatat gtaaagcact agcaaatgga
      181 gattgaattt caactactgt tgatttggta ttcaaaaaaa atactgtcag atcctttgaa
      241 atatcttggg aggtcttgtt cggagcttat tgactgaaat ttgcatgcga aattagccac
      301 aactgcatga gtatttgaat aggtgccagg aaacccaaaa gaaggcaatg cttgatttct
      361 tccagtgatg ctattttcat gcagtcatga ggcttgaaat tgacagtttg gcaggttgat
      421 ttaatttgct ggccttttgc atattcacca ctgacagcta aggattccca ggcaagccta
      481 gtaagtcggt ttagttatct tgtgacatgc cgacccggga ggagaatttt ttccccttaa
      541 tttagttaga taaattttga atgacccatt tcagcttgct agcagatgtc tacaagctgt
      601 ttaacatcct ttaaattaag aaccatccac actaattatt tcctgtatgt tttatgcagt
      661 cattgtacta actttaattg aatgatggtt aaaaatcttt aaaggtgatg gttaccacat
      721 acaatcccgg tcatgaatca aaagctctca gaaaattcca ctggcaa
//
LOCUS       KCLJ01003248             613 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 361722cal ultra-conserved element locus
            uce-2623, sequence.
ACCESSION   KCLJ01003248
VERSION     KCLJ01003248.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 613)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 613)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..613
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="361722cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>613
                     /note="ultra-conserved element locus uce-2623"
BASE COUNT          174 a          119 c          133 g          187 t
ORIGIN      
        1 ctgaacagaa ggtgtttagt ctgaatgctg gcttcatttc aacaaatcaa gtgagtgtgt
       61 ttcagacaac tttgtaaatc ccaatctcaa cacaaaccat cacatttcac tcatgaggtt
      121 caatacggag ataggacatt tgcagttaga tcaaacacaa gagaaaagga caagtggttg
      181 gattttaatg tgaccagggt tgaacccttc tatttacagt tgtggagaaa gaaaatattt
      241 tcctgaccac agttgaagag agaccctgac agggctttcc tgcttgccat ctcccatgtc
      301 atcagtgttt tctgggagaa gaatttgagg tggttttcca cctaagtggt tacagctgtt
      361 tccacaggat cagtcagatg gagtttctgc ctctgtttat tttggctctg gttttcggct
      421 ggagcccagc aggatgacag tgtttgctca gggtcttggg actttggaca aacattccag
      481 aatttctgac ttcttaacat taatgtttga tgaattctgc tcttaatttc ttctggaaaa
      541 atgtcaagcc cactgcctta gtcttacaac agtgaaaaag agaaaatcat ttactagcct
      601 gtgaaaatga gca
//
LOCUS       KCLJ01003249             462 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 361832cal ultra-conserved element locus
            uce-5035, sequence.
ACCESSION   KCLJ01003249
VERSION     KCLJ01003249.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 462)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 462)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..462
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="361832cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>462
                     /note="ultra-conserved element locus uce-5035"
BASE COUNT          169 a           84 c           70 g          139 t
ORIGIN      
        1 aattgtatga gaaacctcgt attcaaatac ttctacaaaa tatatgtcat gctagaaaat
       61 attctattgt caatccaaat agaacacaaa ctaaaatgag ataattggga aggtgcccat
      121 aaagtcagcc tgaatatatt atcacaagta tatgtgagat aatatttgtt ttaaaaagat
      181 tctatggcac tgtaaactca gtctcattag agactgcatt taaaaggctt ataaagttac
      241 tcattaatgt tatcttgttg tatctccaca gctttttcat taaagaaaat tcagcagaaa
      301 gcattttctc ctgatagcag gaaccaattt gcaataaatg ttctggaaac cactagggaa
      361 gccattactg aggtctaata aaaacagaca agcgtaactt gttctatatt tttgtttcaa
      421 tcacatacag atgagacccc gctctccaca ccaaccgcaa ga
//
LOCUS       KCLJ01003250             730 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 361934cal ultra-conserved element locus
            uce-7277, sequence.
ACCESSION   KCLJ01003250
VERSION     KCLJ01003250.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 730)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 730)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..730
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="361934cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>730
                     /note="ultra-conserved element locus uce-7277"
BASE COUNT          222 a          151 c          140 g          217 t
ORIGIN      
        1 ttgccataat caaataaggc tgcagtgctt atattctaat taaaaaataa actctgatat
       61 ttaatttaga aacctggaag actgtaccag caaaattatg gctacaacct gcaccgacca
      121 ctcgatttac ccacagacag caaaaaaatt agtattaaac aagcaatgct gcaccgctcg
      181 atatgtatta aaacaagtat tgtacccagt tattaatttg cactattcac ttttaaatgc
      241 agcaaatacc tcattaattt aattttaggt gcccaccagt ttatattgca ttttacagtc
      301 tagaaggcaa tttactatta actggcaatt acatacagaa tgattgttaa ttctgctcct
      361 aagtgctagc tgcttgaaaa ttgttatctc tctctaattt ttgaccttct tacaacaggg
      421 gtgaggtaca ctgggaatac aaaggactag tagagaagag ccggacatgt catttgtgac
      481 tcattctttt aattcaccgt gctaatcaac tgaactgcca caatctccca aggtaattgt
      541 atctttataa tagttgaaag cagcgggcaa aaaggcatgg atagatgggg aaaggccttg
      601 cccctgctgg gagcggcgtg ctcctgcttc tgcgccgggc taatgggggc tttggagaaa
      661 aatctggaac tttcgcatct ccctgccctg atggtttaat gtctcaactt gtgcgctcac
      721 aaaggctttg
//
LOCUS       KCLJ01003251             353 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 362045cal ultra-conserved element locus
            uce-3755, sequence.
ACCESSION   KCLJ01003251
VERSION     KCLJ01003251.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 353)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 353)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..353
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="362045cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>353
                     /note="ultra-conserved element locus uce-3755"
BASE COUNT          123 a           49 c           72 g          109 t
ORIGIN      
        1 aaaaactgat gatgtcaaga gggagcaagt tgcgatgaaa accaattgtc ttcctcaaaa
       61 attaagctac tctttttctt cttgttttaa tctagagtaa aagaaatgtt taggtaaggt
      121 ttatcttgaa tcttaattgc cttaatttta aggacgtcaa aggctctcaa ggcaagctgt
      181 caacgtcttg ttagaaaacc cgagaatgaa ttgaaactgc tcacaccggt gctggtgcag
      241 aagtttaata gactgagttt ttaaaaaata aactgtacag tttaaaagaa aatgattttc
      301 ttcttttgaa gaaaagttga tgataaagga actgtggcaa ctgaaaggat tgg
//
LOCUS       KCLJ01003252             593 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 362141cal ultra-conserved element locus
            uce-6136, sequence.
ACCESSION   KCLJ01003252
VERSION     KCLJ01003252.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 593)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 593)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..593
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="362141cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>593
                     /note="ultra-conserved element locus uce-6136"
BASE COUNT          158 a          158 c          129 g          148 t
ORIGIN      
        1 cggccccggt gacgcggtcc cctccgagcg acgcgccacc gcatctgagc gccaggcaac
       61 cggttttgtc acttgctttg agacgcgtcc tgcctggtct ctcttgtttc attacccgaa
      121 atcccagaga aaccacccgg caggatcaat cagtcacagg cagccagaca gttttcttgt
      181 actttattaa agtgtaatca aacatcggtt aagtggaaaa taaatatcca gatctaataa
      241 gctgctcagt cagatcgtgt aaatgcaaat tacaagctgg ttcccatctc cccgccgggg
      301 gactgaacaa gccacagcaa ttgcttcatc caccgcgatt gtaaatcaac taaaataatg
      361 gctggataat gaccagtttg cggtttcaag cagattgaat gataacaaac tgcgtgtgtc
      421 gcaccagctt ttcatttagc atctcatcat ggagcgagca gctcgcctaa cagcttggct
      481 gcctcattag gttgttgtct gcggcttgta aattcaggct gcagccagca gattacctga
      541 caaagttcct gatagggaaa aactagacaa ttcaatccag tccttcaatc cct
//
LOCUS       KCLJ01003253             603 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 362251cal ultra-conserved element locus
            uce-1085, sequence.
ACCESSION   KCLJ01003253
VERSION     KCLJ01003253.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 603)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 603)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..603
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="362251cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>603
                     /note="ultra-conserved element locus uce-1085"
BASE COUNT          159 a          131 c          133 g          180 t
ORIGIN      
        1 ttccctttgc tttctgcttc ccgacattcc aaaaatgtcc tgttgtagcc tcaggaaaag
       61 aactgagcga ataacttaga aataaccagg attgctccag ttaaggaatt agcctgcctt
      121 gcttttgcaa taaagctctg tcagccctgc cctccttgct cgagttttaa ttctagtctc
      181 taatctcagc cgctcctgtg ataaattaat tgtaatgata gaggccccag ttacgaggtc
      241 tgcaccgttt gcttgtaatc tgagcgacag gtttagggcc tgctttattt aagatgcgag
      301 ggtaattaca tgggagttag catatgcagg cagggagata tgattcattc tccctgcgac
      361 ggccatgaca cagctgtttg tcggataaaa tagaggaacc gtgttgttac aaaatgttcc
      421 ccttattata cctcattaaa aacaaggctg cgataagtca gacctggcaa tgaataaaat
      481 gtattgcccc ctgtaaaagc tgataggaga gaaagagggt cttccgagca ggcttgggtc
      541 atttatttat ttttttttca tgctccctct tctgcctctc actggctact ggagggaaga
      601 aaa
//
LOCUS       KCLJ01003254             359 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 362362cal ultra-conserved element locus
            uce-2135, sequence.
ACCESSION   KCLJ01003254
VERSION     KCLJ01003254.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 359)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 359)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..359
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="362362cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>359
                     /note="ultra-conserved element locus uce-2135"
BASE COUNT          125 a           58 c           39 g          137 t
ORIGIN      
        1 aactaaaaca agtaatttct ttttttttta attaactgct ctaattaaca aggaaaccat
       61 cctccccctg aattagttta tctaattttc atctttattc aaagcaaaat gacaatgatt
      121 aattgaaaat ttaataagcg gtaattatta acttggcaaa cctagtacca attaacactc
      181 tattaaaact aattatgaca tgtttcattc aagtgtttgc acttaattgt ttcatgcact
      241 taaaacccac cttaattaaa tgttctgttt aattaaagcc acagatttct ataaaaatgt
      301 tttactgtag attaaaatca acggtgttgt ttgagtttta gtatttagcc catgtactt
//
LOCUS       KCLJ01003255             361 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 362465cal ultra-conserved element locus
            uce-5786, sequence.
ACCESSION   KCLJ01003255
VERSION     KCLJ01003255.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 361)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 361)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..361
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="362465cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>361
                     /note="ultra-conserved element locus uce-5786"
BASE COUNT          118 a           61 c           79 g          103 t
ORIGIN      
        1 aaaagccatg taaatagcaa agaaaatgtg agtctgcgtc ccttctgatt tcaggttggg
       61 agtagaagct ggagtaagag gagctgagct tgtgcttgat ttgcagagta gcgtgatggt
      121 cggttgggct gcgttggcag catggacctg tgccagactt caccacaatt catactgtgt
      181 cagtttaata aatgcactac ttaaattatg aaattacaaa agaaaaaaga gaatgcactt
      241 attcagactc ttaatacatt aaaaataagg cattaaaaca ctgccttttt ttttttcctt
      301 ccagaatcaa taatgaacag gaagggttgt agacattaac agtcatggac attcaagctc
      361 t
//
LOCUS       KCLJ01003256             542 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 362676cal ultra-conserved element locus
            uce-3077, sequence.
ACCESSION   KCLJ01003256
VERSION     KCLJ01003256.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 542)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 542)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..542
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="362676cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>542
                     /note="ultra-conserved element locus uce-3077"
BASE COUNT          163 a           99 c          103 g          177 t
ORIGIN      
        1 ggctgtacag ggcacatctc cggttagtgg tgcatttgga agtagctgat ttccctacac
       61 ccaaaaacct ttgagaattt aaatattatt tctgcttagg agtaaactgc tcatcatcac
      121 cctagtttga ctaaagattt aagctgaagt acgtgagcag catagaatac atttcttgct
      181 cagaaacaca aacagctagc caggctctaa gtatattatc aggcaagttc tttcagaaac
      241 gtattgctaa agaagcttaa cattaattat tgtaactttg ggaagattac atccacacta
      301 gccttgtaag aagcagcata cacttcttga cctccaatgc tagagcttta agacacaaga
      361 atggcatttt accaacttta atgggataac cagtattaat ctttcagcag taagggaaga
      421 aaaagtgttt agagtataat acccttctga gttctgatag aggctgcctg ttgtgtgtac
      481 tgcagtcata attcatttgt ttctctctgt tgttttggtt ttgttttctt aattatttaa
      541 gg
//
LOCUS       KCLJ01003257             831 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 362786cal ultra-conserved element locus
            uce-249, sequence.
ACCESSION   KCLJ01003257
VERSION     KCLJ01003257.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 831)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 831)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..831
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="362786cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>831
                     /note="ultra-conserved element locus uce-249"
BASE COUNT          243 a          197 c          170 g          221 t
ORIGIN      
        1 gctagtgacc agagaaatgc atatcagctc cactggggaa atctgtgttg agacccttaa
       61 tgcttcctga catctccacc aggtcctctc cgtaggtgac cccaccatga caatcctggc
      121 tggcccgtcg gtcgtgggcg aggagagggg agataacgtg ggcagtgtct gcgccacaga
      181 aatctcttaa aatgtcactt gtagaggaaa acaaaactgt tgcaagagca acagaagctg
      241 cgaaaaaatg ggagctccta aagcctttaa cacactagaa aatttatgaa aacatgaata
      301 aaaggtaact tattcagtgt cagccttaca tatttatagt ttaaaaatta gtcaaagttt
      361 atgtcccgag gttgcaccta caggaagcca gatgtgtgcc ttctgcatgt gacctaagac
      421 aggcctgaag caacaactag ataatttctc gctcatactc cacaccgtcg atcgcggcgg
      481 ctttctgagg tgagagaatc tgacagcact aactctccag ggcagaactt tccagtcaag
      541 tggatcaacg gactgaaaat ctcttatgaa tagtcattag gccttcatta caaacccctc
      601 acaacccagt tctcttttcg caaccaaatg ccttttgtca tcttcacaag gtgcatcatt
      661 taattaccaa ttgatttctt tatatatgac aacatgtcag atagcaaaat acagtgtatc
      721 tcccttaggg ggagaagtct gttaactatc agcgtgccag attactgaat ttagctggaa
      781 gacagctatt ccctccactg tgcctttatt ttaactcgct ctccagtttt c
//
LOCUS       KCLJ01003258             491 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 362898cal ultra-conserved element locus
            uce-4294, sequence.
ACCESSION   KCLJ01003258
VERSION     KCLJ01003258.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 491)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 491)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..491
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="362898cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>491
                     /note="ultra-conserved element locus uce-4294"
BASE COUNT          154 a           95 c           82 g          160 t
ORIGIN      
        1 taaattcttg aaaagcctta aatctgatct ttaagtttga cagatatgct atatttgtgt
       61 ggtggatttt acctactgta gctctgtgtc ctctgagtat agctaagaaa aacctgtgag
      121 attgttaaat gggagcttca cctgccagtc tgtactgcaa gatctctata gcaaccaaac
      181 ataaatcaag aaaatggccc cttttgtaag ttggttaata ggcacaacat gcttctttag
      241 aaaatccaac tattctttca atagactttg attgaaagtc agccttttct acagacacat
      301 tcacattcac atctagtagc agcttgtatg gctgtccaag gtctaattta ttacccttta
      361 aagattgggc aaagaaaaaa tggttctcgg aacaatgttt acattcagag gcataagcac
      421 agtgccacaa aagagcatcc ttttgttctg aacccagaat attaatcttt aacctacttc
      481 ttatttcaat t
//
LOCUS       KCLJ01003259             709 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 363007cal ultra-conserved element locus
            uce-1306, sequence.
ACCESSION   KCLJ01003259
VERSION     KCLJ01003259.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 709)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 709)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..709
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="363007cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>709
                     /note="ultra-conserved element locus uce-1306"
BASE COUNT          191 a          133 c          158 g          227 t
ORIGIN      
        1 cacatgaaaa caaatgcgag ccatcatatt tcattaacgg gctgcccccc gctcaagtgc
       61 cctttttgat gtgggagctc atcctgacag gaatcaggga gatatgtgtg attaaggcca
      121 gcaataatag ttagtgcatt gtattgtaaa ttacctttct gggccctgct actttatcag
      181 ccccactggc cttggcttgg gtacattttt gactactctg tatatacagt gtattagcgc
      241 aatggagatc attatgtggc ctgtatttga gtcattttta tttaagatgc caaacaataa
      301 gctgttgatt gggggaacaa gaggcgaaca ataatgttct gtgtcacata atacaccacc
      361 attttccagc tttgctttag aagggccctc tttattgttt ttgtataaaa atggttctta
      421 ggaggaggaa tattttgctg aggtatgtca ttattttgca aatttctatt atctcatcat
      481 gttgtcttca ttgtaaattg cagctaatta ggaacctagt tagagcccca gctttgaggc
      541 tggctttttt gtgaaaagag cccaccgatt accgcactac aagagaggaa gggagagaaa
      601 aaggagatta atctggttac ctaggcgaca ctcgcttcca tctgcgagga acaatacatt
      661 tttgtttcct tggctcagtt cagatctgtt ttgtttaggg gggaaaaaa
//
LOCUS       KCLJ01003260             491 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 363106cal ultra-conserved element locus
            uce-380, sequence.
ACCESSION   KCLJ01003260
VERSION     KCLJ01003260.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 491)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 491)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..491
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="363106cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>491
                     /note="ultra-conserved element locus uce-380"
BASE COUNT          151 a           93 c          102 g          145 t
ORIGIN      
        1 ggggatattt acagcaccta aatcaatgtt gaggacatgc agaatattga gggatcaact
       61 ctacttattt ctaatgcact ttaatatttg gactgcccga gcgaaatcgc tgtgcaggaa
      121 tgataatgag gagttttttt atgatggttg gagagaactt tatggaagtt gataaatctc
      181 atcttgtagg tttcaatttc tcattgagat gggcagaatg cattgatact gcatttcaaa
      241 ttggccagat caggaggaac agcagctaaa atccattaca acccaattac atccatcagc
      301 tgaagctgtg tgcattcact cgtgaacatc agcatttaat ccataaagag gaactaatga
      361 gaaatttgaa aatggaatcc atgcatcagt ggcttttttt gctgggatta atgaactgcc
      421 agaacgttgt caacacactg caaacccatt ctctccaggt ttgtttactg aaagattgca
      481 cccgtccctc a
//
LOCUS       KCLJ01003261             574 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 363216cal ultra-conserved element locus
            uce-6161, sequence.
ACCESSION   KCLJ01003261
VERSION     KCLJ01003261.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 574)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 574)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..574
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="363216cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>574
                     /note="ultra-conserved element locus uce-6161"
BASE COUNT          173 a           94 c          127 g          180 t
ORIGIN      
        1 tgataattga ggagttattt ttttaaagct gtcagctaac ttcattggat cataggctat
       61 tttttacttc aaaatttatt ttgctgttct ttaaattaat tcacgtgtat cagtgatgat
      121 ctttactgtg ggactgctga ctttgtattt cagcatagtc aggtgctgag tgtaaatttc
      181 actgactgac tgaaagtgca ggggaaatga gtgggtaatg agagcagagc agccagttct
      241 ttaattgaat taaaagctgg gtgacaccaa tgcagacacc tgtccaatta cagacaggcc
      301 aaggtgttta ccattgctgt acaagcgatt tgaagatgac agaaatcttt ccgcccacag
      361 attaacataa tgaaggagaa cagattacag tggatgctgg ccaaacagat aggatggcag
      421 ctgagaaaaa gtagtttgct gaagtatgta aataaaatct gtgcactttc tattgcctac
      481 ctatgcacat ctgtttcttt gtttagtgca agagtacatg tgaacattaa ttaggaagtt
      541 gctgcctttg ctgaatgaac ctcctgtagc aaaa
//
LOCUS       KCLJ01003262             625 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 363322cal ultra-conserved element locus
            uce-3281, sequence.
ACCESSION   KCLJ01003262
VERSION     KCLJ01003262.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 625)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 625)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..625
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="363322cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>625
                     /note="ultra-conserved element locus uce-3281"
BASE COUNT          174 a          122 c          118 g          211 t
ORIGIN      
        1 tggattaatg gcttctttag gcaatggtta ctagaaaaaa gttattctga agatgtgaca
       61 ttcgcccttg ttagtagaca aagtagcagt gtttgaatga agggaaatgt ctagatgatc
      121 tgaaattgca attggcagca gcatccaata ttcagtgcac atatcttagc accaactttc
      181 tgccatttca agcccctctc ttcctctgct ccctgagcgc atttttatgg ctttaattta
      241 aacgagtgct tcttgatatc ttgtttacaa agctgccaaa gtgaaaaata cctgtattat
      301 atgaggcttg cagttccaga gttatctctg cactacaaca caacatcatt atccagtctg
      361 ccccttatca ctcagctggt aatacagact accgagagac ttgtgccact tttgttacag
      421 ctttatatgc tcaggcttat tggtgatatc ttcctctcca actttgtaag gatcttcaaa
      481 ctggtacaag cctgagactg ttcttgaaag attagatttt tctttgtgac ttcttgaagg
      541 aataggtgaa tcatagaaag taactttttg atttatttta ctatcttctt gtcaattgaa
      601 taagctgcta aggaaagggt gtagc
//
LOCUS       KCLJ01003263             801 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 363431cal ultra-conserved element locus
            uce-2952, sequence.
ACCESSION   KCLJ01003263
VERSION     KCLJ01003263.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 801)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 801)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..801
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="363431cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>801
                     /note="ultra-conserved element locus uce-2952"
BASE COUNT          279 a          139 c          151 g          232 t
ORIGIN      
        1 agatatttta tgcaagtcgt aaaatttcag tggtatatgg aaggggtctt agcgaaatac
       61 acatatgact ataaacaagc catcattctg gtaagaggaa atacaaacaa ccagaataaa
      121 aatagttgat gcacaaaagc cataatgagg gggttgctca aaaaataact tctactttga
      181 atggtttgga tgaaatacaa attatccaca gaaaagtgtg gactggcata aatgtttgta
      241 caaaattata agtatatttc tagaagtatg caagagacaa ccgcctgcat gctgcacaag
      301 gtcccaacaa cgctctgcgt aagtgctagt gcacagagtc caaaccactg cattttaatt
      361 actatgcagc ctcagatata ttgcctttga tatggaaatg ttcttgttct ctcatcttca
      421 catacggtct catgcacaga aatctttatc tgattcataa aaaataaact agaatccaat
      481 ctcaacacct gacctcagtg cttagaagtt ttttactaag catggtgtca ctataaaaag
      541 aatgggtaat attggtgtaa agttagatat ttggagcaat gatatgaagg atttgcagtt
      601 aggaatcaaa tcaatactgc acctctgagg ttttagagtt tcctattgcc ttatgtcagt
      661 ctaccagtga ctggagacac aattgactac acctttctgt gtagctcaag aagaaagaaa
      721 aaatatttaa atgacatcct gtcttgccac cgatggaaga gatgcacttg ctgtatggaa
      781 tagttctgaa atctaataaa t
//
LOCUS       KCLJ01003264             546 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 363543cal ultra-conserved element locus
            uce-3549, sequence.
ACCESSION   KCLJ01003264
VERSION     KCLJ01003264.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 546)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 546)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..546
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="363543cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>546
                     /note="ultra-conserved element locus uce-3549"
BASE COUNT          183 a          105 c           82 g          176 t
ORIGIN      
        1 ttctttaacc ttctaagata caaaagacat cttaaaccca tacagagcgt taaatcctaa
       61 atattttcta agcagctatg atctacttgc cacattagag ttgtaaatta aggtctcata
      121 tgttgcagga accagccttc catatcacag ttttctcccc tgaatgaggc aagagtcagt
      181 cagtaaatat atgtggtcaa cctcagattt gcctcactgg gagttcacat gtatttttaa
      241 ctgccttcaa ttgttaatgt attcctcaaa tgagatgcat caccttgaag aatgactttt
      301 tgccctctgg gaatacgcca aacaagtatt tcattcacta tgataatcag ttctacctcc
      361 agcaacatat gaaacccaaa tttaataggc actagtgatt aggttttaag acacagagtc
      421 atcactgtcc actgaataat aataatatat ttgcttctag gaatcattaa taaatataac
      481 tatcaacatt tggggaatat gcttaataaa tataatgtgt cttgtcatta aaaaattatg
      541 gacagt
//
LOCUS       KCLJ01003265             790 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 363651cal ultra-conserved element locus
            uce-3477, sequence.
ACCESSION   KCLJ01003265
VERSION     KCLJ01003265.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 790)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 790)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..790
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="363651cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>790
                     /note="ultra-conserved element locus uce-3477"
BASE COUNT          222 a          145 c          163 g          260 t
ORIGIN      
        1 atttattatt aatactgcaa tcccactaaa ttctttgaga caatggagcg ttaagtagta
       61 tgaggctgac tgaagtgcct ccaccattta ggggttagca actaaacggc attatataat
      121 ttgagtcaat ttctgcccaa gattccaggg agtgaactca tcaggattac tcattgttaa
      181 aggagtgcct cagggtttag tactttgact ttattatttt ttcctttagc tattcaaaac
      241 cttggttggt ttgtaggaaa tgttaattat cctttctgtg ctgatgtccc actgctgttt
      301 tataagcaga gctttgcttg tacaacttca aaagaaatct tcaaactcaa tattaccaag
      361 tttgaatatt atctaattaa cctcccagtc tgtcatgcct tgttggttat catgaaataa
      421 tcacagcccc tcaggtgttg aagctctaga tgcagctaag tgcctctaat tccctaaggg
      481 ggtgattagc tcatgataac aatgctccct tgagttgttt tattgctttt ataaaaagac
      541 tttattgtgg gggaaatgtt tatttttatg caggaggaag atggagctga cagttgaggc
      601 tggtgagtga ctgcagctgt tactcctgag ccgtggtgca aaccttgata tatttgctca
      661 tttctgatac tccttggaca atcacaatat gctggctggt aattaagctc ctgctgaact
      721 cacagtgtga agacagaaaa taaatacttc tggttctgcc agaggtgagc agttacaaga
      781 caaagcaaaa
//
LOCUS       KCLJ01003266             446 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 363759cal ultra-conserved element locus
            uce-7265, sequence.
ACCESSION   KCLJ01003266
VERSION     KCLJ01003266.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 446)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 446)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..446
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="363759cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>446
                     /note="ultra-conserved element locus uce-7265"
BASE COUNT          151 a           81 c           77 g          137 t
ORIGIN      
        1 aaaaggaaac agaaaagaag tctcttggca gaaaaatgtg tcttaggaac tctttcaagg
       61 cttagatgca atggagcaaa gtatacagga aatacttcag tgctttgaga ggcatttcct
      121 cccctccccc ccttagaaag atgcagtaat taaaacctaa ttattatctt cattttaaac
      181 aaaacctaaa gtgaatacca attaataaca acatactaat gagcatctgc tgtgatgaaa
      241 ttgaatatga atgtgctgca aatttcgggt aatttatttt tcggggaagt gccactggtc
      301 tcaatccact gctagaagat tgtatagact gcacacatct tccatcatgt cttgtgcagc
      361 aattttttat tttaaggaga tacttcaact ttgtggatgt ttatatatcc aaatctatcc
      421 atgctaaaat gatttcaagg caatca
//
LOCUS       KCLJ01003267             643 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 363865cal ultra-conserved element locus
            uce-2614, sequence.
ACCESSION   KCLJ01003267
VERSION     KCLJ01003267.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 643)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 643)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..643
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="363865cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>643
                     /note="ultra-conserved element locus uce-2614"
BASE COUNT          228 a          113 c          107 g          195 t
ORIGIN      
        1 gacaaagcag tgtaaattgt cagaagaaat ttaagcagcg tttaaacaac ttctcttgca
       61 aatcagaaca tctttcaaac cgaaattata tttaaatctg gaaaacgaag tggcctttcc
      121 ctttagctac gaaaaaataa ggttatgagg aataaaagtg atgaattagc cactgcatta
      181 agcgataata aatcaggctt ggtgtgattc gcgatcaatt ccaattagtc atgaatatgc
      241 taagtaaagc acagtacact gttttagaca gttatttctt cattaaggat cactcagtga
      301 tttctttcac aaatgctcta atctgatttc cttttgattt ccattagaga cagtgaataa
      361 tgacatttaa tttagccctg caccataaac ccaaagatat ttgttgtaat tgaattactg
      421 cctgctcctc actatggtct cataactttc aattataacc ctgacagctg ggtgatatga
      481 gtttccagta caacactaaa aataaaaggt taataaggac tagctaccat aggagcttca
      541 atttatttac agcaaatttc cacgctaaat tgaaactata tcctttaaca gcaagggaca
      601 agaggttcag ataggaatta gagaacaatt ctgaaagtat tag
//
LOCUS       KCLJ01003268             333 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 363975cal ultra-conserved element locus
            uce-5495, sequence.
ACCESSION   KCLJ01003268
VERSION     KCLJ01003268.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 333)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 333)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..333
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="363975cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>333
                     /note="ultra-conserved element locus uce-5495"
BASE COUNT          121 a           45 c           54 g          113 t
ORIGIN      
        1 tgcccagggt gaactataaa tacaaagata attttaatta atttatttat ttctttacac
       61 ataactgaaa gtgatgttac agtacataag ttatttacaa ctgtgcagta atgtgttgca
      121 aaataaatta tctagaaggc agcaaaagta cattgttaat gtatataaaa actgtacagc
      181 atttatggga tacaattttt ctttatatga gtattggctc tgtagtgttt tcaagttatg
      241 ttctcagaaa gagaaacgaa atgcccaaga ttaaaggtat ataaaccacg tggattttac
      301 tccattaaaa acacagttgg caaagtcctt tct
//
LOCUS       KCLJ01003269             494 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 364070cal ultra-conserved element locus
            uce-7162, sequence.
ACCESSION   KCLJ01003269
VERSION     KCLJ01003269.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 494)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 494)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..494
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="364070cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>494
                     /note="ultra-conserved element locus uce-7162"
BASE COUNT          157 a           59 c          108 g          170 t
ORIGIN      
        1 tttagcttgc ctgtgtgctg cttgaatatg aaattttaat tattcctctt aattatggtg
       61 cattcaccaa aaagagggaa atcattggtc aggtacaaaa agaaactgct tagtatttga
      121 aggaatttga taattttgtt gtagttcgta gcttggcagg tggtaataat gctatgccag
      181 cactgtcaaa atatgaaaat taaagtgacg atgggtttta atgaaatcca tttgacaaat
      241 ataattaagg tgttttaata tgaagccctg taataaagac taccggtgga ctccctgagg
      301 tcctgactaa ttgtgtagat tgcttttaag ctttgaatag ttttattgga taatgaactg
      361 ttaagaagtg ttagatcttt cttaagcaga atttggtttg aaaaagaaga ggagagacag
      421 gcctgaggtg tggcatttta aacataatta gaagagagat ttaagttaac atctttgatc
      481 ttgctgtcag tttt
//
LOCUS       KCLJ01003270             427 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 364179cal ultra-conserved element locus
            uce-1168, sequence.
ACCESSION   KCLJ01003270
VERSION     KCLJ01003270.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 427)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 427)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..427
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="364179cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>427
                     /note="ultra-conserved element locus uce-1168"
BASE COUNT          126 a           68 c           64 g          169 t
ORIGIN      
        1 aggcagggaa acgtgtaaat tctcctcccc aacccctatg tatttcatta tacattttga
       61 actgttttat aaattcagtt accagtcact acttagtaat tgacaatttc tgaaaattcc
      121 tgtttcagca gaattttaaa tgaaggcgaa agcaagccct acaggctttc tacttatttg
      181 aatgtttctc aagtatttta tattaaaaaa cagtgcctct gtttttagaa ctactgctca
      241 gtaaagttgt ttaaaccatt tctggtagct aatgacaatt ttatattaaa ttgtatatta
      301 actttagtga gactgatttt tttagttgtt tacagtacaa atacttgtat ttgtttttta
      361 attgcagtat ttccattgtc gcagtaattt agtaaaactc tgtggctgcc ttgatttttg
      421 acagatt
//
LOCUS       KCLJ01003271             453 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 364285cal ultra-conserved element locus
            uce-3830, sequence.
ACCESSION   KCLJ01003271
VERSION     KCLJ01003271.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 453)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 453)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..453
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="364285cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>453
                     /note="ultra-conserved element locus uce-3830"
BASE COUNT          113 a          103 c           87 g          150 t
ORIGIN      
        1 ttttcacaat tttgaagctg caaacacaga gaacttgtgt ttccctcatg actgaaacct
       61 ttttaggact atccttaaaa ctacttttgc acgtttagcg ggaatcagtt tgcgttgcat
      121 gtttccttcc aaatctcatc ttccccagga tgagtttgct cccaaatgaa gtagaggcgt
      181 tttccttcag gctgcatgtt atcctcttat ccctactgtt ttggaataga gcgtaaccag
      241 ctggagaact gtaagaagcc tgataatgca gctattttct gctgtcccgt cttaatcttg
      301 ttacacaaat ggttgtgaag agattcatga attttaattt tgccctctgc attagtgcct
      361 catgtcactc atacacagct gccttctatg gggagttgtt cacccctcct cctacaacag
      421 gggaaaaaat tagttacaat cttggcagta gtg
//
LOCUS       KCLJ01003272             726 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 364397cal ultra-conserved element locus
            uce-5943, sequence.
ACCESSION   KCLJ01003272
VERSION     KCLJ01003272.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 726)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 726)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..726
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="364397cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>726
                     /note="ultra-conserved element locus uce-5943"
BASE COUNT          174 a          186 c          170 g          196 t
ORIGIN      
        1 gacagctctg ctctcgtcca tccactgccc atcatacaat tatggctgag acttactgta
       61 atcaatgcta tgatgtgctg ggcttcgggg cgcggacacg ctcacaccct cccgataaag
      121 gctttttgcc ttattttgga gggcgggcgg gcgcgtgtgc gcgggcgggg aggagtacag
      181 tttgaaggag ttgttagaaa gaacagaagt gtgcctagcc tgaggcaatt cactgctcag
      241 cctattagct gtggtgacct tgcctattcc tttgtctttg tattttcctc ctgctgcttt
      301 ccttctcaag cattcccttt tgttgtctta gagaatgaga aaaatgccat atctccctcc
      361 agccccctgt agtttgaact cctgagatct ggtgacacac ccagcctgta gccaccttta
      421 gccctgcgtg aacttggcag gaggagagtc aaccattaaa tactgagcag agactcaaac
      481 agatagaaat gcttgcccac actcctaccc caggctgcct ttttattgcc tgtccttcat
      541 acagagggaa agagccttgt agccaagttt tgacactgcc acatatggcc tcctccatca
      601 atctgactaa tcaagcatca aggagaagca aagccaactt aattgccagc cagatatctc
      661 tggtctcact tgacgcaact tgaaattgat ataagtctgg gaaaggagct ttagctgatg
      721 gtggat
//
LOCUS       KCLJ01003273             624 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 364501cal ultra-conserved element locus
            uce-7171, sequence.
ACCESSION   KCLJ01003273
VERSION     KCLJ01003273.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 624)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 624)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..624
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="364501cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>624
                     /note="ultra-conserved element locus uce-7171"
BASE COUNT          199 a          127 c          111 g          187 t
ORIGIN      
        1 caagagcttc caggcctggc agttatttag acagctgtca atcaaaatgt ctcacagcta
       61 ccctaccgtg tcagccatca gctaacccac actttcccag ggatgtctta gcatggcatc
      121 tttgttctgt tttcagataa acagatccaa tttctcaaca aacagactgc tacagtcctt
      181 ttgataacaa tgtaataatt caaaacaaat gattctaggc tttgatgata gcacttttat
      241 gggtcatgaa gaaatcctcc caccaacatc tgtttgattt tatctacttg aactttatcc
      301 tccagttgaa gatttataag ctgaaatcat cccagcctat taaagtcagg ctaatgttaa
      361 agcactaaca cagagaatga aagtttttgc agtcatccac cttttgaaat cctgccgtga
      421 gggaaagata tcaaaagttt gagagatgta tgtttaaata tgctggaagt ctgcattctg
      481 cacagagccc tggatgactg cgagattaag gaatctaact gttgccctac tctgggggca
      541 agttatttac agaactatta tttaaaaaga caacatgaaa aatacagatg ttgtttacat
      601 tgaaagactg ttttcttagc aaaa
//
LOCUS       KCLJ01003274             585 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 364610cal ultra-conserved element locus
            uce-4234, sequence.
ACCESSION   KCLJ01003274
VERSION     KCLJ01003274.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 585)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 585)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..585
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="364610cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>585
                     /note="ultra-conserved element locus uce-4234"
BASE COUNT          207 a           93 c          104 g          181 t
ORIGIN      
        1 tttgctacag ttttattgta gtgaaatatg ttcattttag cagtggaaaa ctgccctaaa
       61 tagacagcat aagagcaata agatgtcaca ttgcagagca caatttaaaa atgatgtgct
      121 ctagaagtaa ggcttttaga catttttgtt tatgtattaa aacttcccac aaatttgatt
      181 gagaatgagc ctttgatgga tatttgctgc agttatgctg cattagactc gatttatcca
      241 ccacctctca ttgttgctat tgattgattt ttaaattaga tgaaggcaat cagtaaatac
      301 cacccaatca agtcctaaaa acatacagga gattagacaa tttagggtaa tcaatgaaaa
      361 tattctgtga tttgctacca ctcaattttg accataaatt atgaccataa ctcgcaagtt
      421 agtaagccat aaaacaagtg gatgtgacaa gaaaaactac aagaaatgaa ttaaggagat
      481 gaagaggaac cactggtgtt atcatttaat gagacaaaat tactctttat acatatctgg
      541 catttctagt tgagtcttgc caacagtatt ggagtacaag agcac
//
LOCUS       KCLJ01003275             435 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 364721cal ultra-conserved element locus
            uce-3141, sequence.
ACCESSION   KCLJ01003275
VERSION     KCLJ01003275.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 435)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 435)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..435
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="364721cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>435
                     /note="ultra-conserved element locus uce-3141"
BASE COUNT          123 a           86 c           73 g          153 t
ORIGIN      
        1 tttttgctaa atgttgactc cagtgaacag ctctctaaga tctggcatat tgatttcttg
       61 ttgtgaagtg agctgttcaa gctccattta agattttcat cttgcatgta gccctgagca
      121 catcatagca ccataaatta gttaaattgc acatttatca caaatgttat tttaagatac
      181 tgcgtaaatg tgatggctgg aagatataca gtatgctgca acaagccact acttgggtgg
      241 ggttagacca gggtcacctt tatacacctg tgatttaaag ctcttctcac ccaatttcat
      301 ttttaacctc tttcttgagg cattttgttt tctcttgcgc ttgatctgca tatttctaaa
      361 taaaatacca aatgcaaagc aaaagccaga agtcagatgc ttatttcaaa atcctgcatt
      421 tataccttca tgttt
//
LOCUS       KCLJ01003276             489 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 364829cal ultra-conserved element locus
            uce-4983, sequence.
ACCESSION   KCLJ01003276
VERSION     KCLJ01003276.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 489)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 489)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..489
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="364829cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>489
                     /note="ultra-conserved element locus uce-4983"
BASE COUNT          153 a           75 c           93 g          168 t
ORIGIN      
        1 tattagctaa ggtgagattc tttctggact attaactttt tttagtattt agatcacaac
       61 tactaaagac ttagctatat tttgacaggt actgacaaag agtgccatgg aattgtgact
      121 caattgtcac cttcgtcgtt ttcaagctga aaaactcagg atgagtgcta ggtactaatt
      181 agaactgtta tattaggaaa gcaaatacaa tggtgtctaa cattaaacaa agcacagttc
      241 tcatcacaaa tggtttcttt tgtgtgcggg ttagtctaaa aacccatttt gcatgctaat
      301 gagacacaaa caataattgc caaagtaact agtttcatgc aattacaaaa accacataaa
      361 aagctctatt gtttgttgtc ttatgatttc ttaatgctaa ttttgcactt gataatttgg
      421 ggatttcatt tgtaccacaa tgtgcaattt ggggtttgtg tgtttgaagg tgaagacttc
      481 taatggggg
//
LOCUS       KCLJ01003277             754 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 364937cal ultra-conserved element locus
            uce-3406, sequence.
ACCESSION   KCLJ01003277
VERSION     KCLJ01003277.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 754)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 754)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..754
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="364937cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>754
                     /note="ultra-conserved element locus uce-3406"
BASE COUNT          227 a          144 c          136 g          247 t
ORIGIN      
        1 aggagtataa ccggattaca gctggctgga ttgaaatctg tcctttggat ccaggagttt
       61 ggaaggtttc atgtgtcact ggcaataaat aatgtgcaat gaacaaagac atccacatac
      121 atgcacctgg gcgtgtgtgc gtgtgtatat gctagtgtat atataaagaa atgaacattt
      181 taaaaagcta tatatgtata tgtgtagcat cttatacata taaatatatg gtccatcatt
      241 ctaattccat gcacaactgc actataacca ttgtggttta taagatcaca cttcatatat
      301 gcatgactca ctggcttcat tcatgtttcc atatgtatgt agaaacatag caaagcagac
      361 attcctagag acattgcagg acaacctcat tgagatggac attctcacct cctcccgaca
      421 tgacggtgct tacaatgatg ggtatgtgac acttacgtgg tcttcctgtt tactgtacag
      481 tcattatgat ctttgcatga aagcatttgg tcacaccagc gatgtttaag ggcaacacca
      541 ttgctgacct cttccgatat ggcttttaga gcattgtgtc ctgtacatat taatggaaaa
      601 ctcattaata tgctagtgag ccactgcatg ccatttgttt ttatcccctt attgttttga
      661 aagtcatttg atttgtgaga agtacctaca gcaatttcaa ctccaatatt aaccaaaatt
      721 tatttaattt tcataaaaat ctgaaacctt tatt
//
LOCUS       KCLJ01003278             721 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 365046cal ultra-conserved element locus
            uce-5602, sequence.
ACCESSION   KCLJ01003278
VERSION     KCLJ01003278.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 721)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 721)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..721
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="365046cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>721
                     /note="ultra-conserved element locus uce-5602"
BASE COUNT          228 a          141 c          127 g          225 t
ORIGIN      
        1 aaattgtaga atttcatgtc cttactaaaa ttcaatcctt caatgtctca aaggaaacaa
       61 aattttgtaa gcgacttcag agaaattcct caaaaacaga tatgggccta aatttgattg
      121 agtttcttct atccaaactt tccttcagtc ttttttgtac gttgtcagca taaattgttt
      181 ccatctatac ctgatggaga agaccttgtt cctgattgct ctgtatctcc acccctctga
      241 attttttttc aataggtgca ctaggccttc caatgagggg aatgagcaac aatacccctc
      301 agttaaatcg cagcttatca caaggcactc agttaccgag ccacgtaacg ccaacaacag
      361 gggtaccaac aatgtcactt cacacgcctc catctccgag caggtattta tcaatagctg
      421 atatttctgc cattgtgtct ttctgcagag ctcttgttaa atgttctgca tattttgcct
      481 acagtctgat aaaaagaaga aaagtagtgt ctgtggacca cttactttgt tagggaaata
      541 ataccataaa aaagtaaggt atgtaaagga caaattgctg gcaaattctg cttcagaatg
      601 taagaggtag ttgtgcagtt aaaaggtgtc atacactgtg agaatataaa gatagtaggt
      661 ctgaagtact cattagaaaa gaaccctttt catatgtata atacttaagt atttatctaa
      721 a
//
LOCUS       KCLJ01003279             645 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 365265cal ultra-conserved element locus
            uce-2156, sequence.
ACCESSION   KCLJ01003279
VERSION     KCLJ01003279.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 645)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 645)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..645
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="365265cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>645
                     /note="ultra-conserved element locus uce-2156"
BASE COUNT          217 a          128 c          110 g          190 t
ORIGIN      
        1 aagtaagaat ttctaccatt atattttcaa aaacacatca acttgtcctt accccagaac
       61 agcaaccatg atttcatttt tgaaaaacag gccccatcct attgaatgct accaaacatg
      121 tacctcatcc tttagctcaa atacattttg catgacctta catgaattgc ttagataaaa
      181 gcccttctac ttttgttatt ttaaagtgca gatgcatttg agtcattttc cccttttgtt
      241 tcatatcctt aagatccgca gcttcaaaga caaaatgtca gcatgcagtc gatttatgac
      301 tgaattcttg aagagacact gaagaattac cttgtcaatc accccaagga ctctgaaggt
      361 cttcagttcc tcggcagggc tccttaggtt ccaagagggc cttgaactta gtgatcctgg
      421 aggctaatgg aagatatcaa agattataca tcaatcaggg tggtacttga aggaagactg
      481 cctgctgaag caaatgccag gccgaaggaa actaaattta tcataaatca gagagactga
      541 agatgaaagg agaagttttc tgtttgtcct tcaacttgca agtaaataaa agtcaagata
      601 acactgaaaa caaaaattta aaaaagcaat gaatttttat atttt
//
LOCUS       KCLJ01003280             713 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 365375cal ultra-conserved element locus
            uce-1252, sequence.
ACCESSION   KCLJ01003280
VERSION     KCLJ01003280.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 713)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 713)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..713
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="365375cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>713
                     /note="ultra-conserved element locus uce-1252"
BASE COUNT          217 a          114 c          149 g          233 t
ORIGIN      
        1 ttttaattac cagtgaatac atgaactctt ttgccacaag cttaatgttc cttttctctc
       61 catcagccaa tgtctaaaaa tgattttgca tgcagtgctg ggagatgaag tggtgaagtt
      121 acctgtgtgt actttgccac tatcttgtga gttttgtctg tgaaagttta atgtagaggg
      181 gctctgaatg attcagtaaa cttcttggca agttagtatg atttgtatgt gaattttcca
      241 attgtatttc agaccttaag aaagaaaggc cttaatggtt gtgagagccc tgatgctgac
      301 gattactttg agcacagtcc actatcggag gacagattca gcaaactaaa tgaagatagt
      361 gattttattt tcaagcgagg ccctgtaagt acttttattt tatctctact ttttatttgt
      421 tgatcctttt tattaacttc attatttagg ctctgaacaa gaaggaacac agagggtgcg
      481 acagcccgga ccctgacact tcatatgtgc tcacgccaca tacagaagaa aaatataaaa
      541 aaattaatga agagtttgat aatatgatgc ggaatcataa aatcgcagtg agtactaaag
      601 tatggtttgt gcttctctta catgcatgag aattttcatg gtgtttgctt accactgaaa
      661 acaacttcaa agagatgtaa tggcttgaga agggaaaaaa aaatgaggtt gtg
//
LOCUS       KCLJ01003281             653 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 365487cal ultra-conserved element locus
            uce-7791, sequence.
ACCESSION   KCLJ01003281
VERSION     KCLJ01003281.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 653)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 653)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..653
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="365487cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>653
                     /note="ultra-conserved element locus uce-7791"
BASE COUNT          185 a          156 c          131 g          181 t
ORIGIN      
        1 ctatcccagt ctcaaaagac tttcttacta ggtcatttcc tggaaagcat gtccagcaga
       61 gtgtcacaac tgtctagcca agattaactt ggctttctat aggtgttaca tgaatatgaa
      121 ttcctcctgt gacagcaaaa agtgcagatg tcataatata cagagcaata tattctcaaa
      181 ccaccagagc catttcctcc tcttttgttc ccttttatga ccctgatgtc atttgaaata
      241 aactgtaatt gggtcatttt gtcatccact gagcagcctc cattaacaaa cctttacagc
      301 agtaagtgct ggtggcagga tctctgtcac aggcagttgc cacttagtga agtttcacaa
      361 acatatcttc attatttatg catgctgtgc tttattaccg acgccaggtg tgagccagga
      421 gcacttcagc acacacaggc agctaaaaag gtcagatgtc agtgctgaag taataaggat
      481 actgaacaag agaggtgtgt tctcaagtca ctgtcagcag ccctgcgcct cgccaggcag
      541 tgcacctctg ctttatagcc ctgctttgag ccaccatggc gttactggga ggtcacaaac
      601 atccctaaca cctatgcata ggttcacaat aaagaaaatt ctaagctgta gga
//
LOCUS       KCLJ01003282             543 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 365596cal ultra-conserved element locus
            uce-2648, sequence.
ACCESSION   KCLJ01003282
VERSION     KCLJ01003282.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 543)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 543)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..543
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="365596cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>543
                     /note="ultra-conserved element locus uce-2648"
BASE COUNT          170 a          103 c          150 g          120 t
ORIGIN      
        1 gaggtactgt ttagaatacc ttattagcac caactgaggg gccacttttg gctgaagtag
       61 agtggtacaa ggtttctaat atccttcaag acgtccatta ttttaccaca gagacacaag
      121 gcccagcttt ttgtgcattt ttatgaggga gaggtgtgga catccaatca gacggaaagg
      181 cgcacgtgct cgcgaaatga attacgccga cgtctgttat aaatctttaa catagctcag
      241 gagatcaatt aagatgttca agcagctaca aaaaggatga ttgaggcaaa tggcaacatc
      301 aggatgacca tatggtgagg gaacgccaga actgcgtgga cataaaacgc gagccatcgg
      361 agcgccaccg ccaacgaaac agcgagcggg aaacgaggca agatagagga ggagggaaga
      421 acagcttggg atgcacgtgc agaggtatca gggaaaagtg ccttcctgta agtcacaggt
      481 tcaaggtatt ggtgtgatgc agagtttatg attccaatag gcgtggctga atgcttaaaa
      541 taa
//
LOCUS       KCLJ01003283             864 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 365696cal ultra-conserved element locus
            uce-7688, sequence.
ACCESSION   KCLJ01003283
VERSION     KCLJ01003283.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 864)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 864)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..864
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="365696cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>864
                     /note="ultra-conserved element locus uce-7688"
BASE COUNT          276 a          154 c          158 g          276 t
ORIGIN      
        1 cccattcctt cttgcaacag tgagcaacag tgtactttcc cgcaaccgcc aaacactatg
       61 aaaatggttt catttacttc cagaatttgc caaaaacaga tgatgactga aactggtaat
      121 gactattttc tattctctat ccctaagtaa ttgaccatta attataatat caataggctg
      181 tggataagta aagcagacac atgttaggac tacatttcat ttgtaactgt tttgtatata
      241 tcataaatct ctaatattgg gctattgtca cacatgatga attattgtaa gcatgtcagc
      301 acatagtgga agtcaagtac attcaaatac tactcagtca gaattgaatt tggcatgata
      361 gtctcataaa aggggactca attgagagtt tccacttgcc tgctctaaac ttgtcacttg
      421 taggtgctaa agagcttgtt gtgttggttt aattagtcaa caaatcggtc cttacttgat
      481 tgcgtggtcg tatcacatat gttaacactt cactgtttga tggagatatt aacaagtgac
      541 aagagtctct tggtctatgg actttaaaga agagaagctc ttctatatta tttcatttgg
      601 tcctgccaat atttattaga tcatgcaggc tgcaggctgc caacaagaga aagacaacac
      661 aaacattttt cagggttatg ctcatctgta tcccaaagaa gggtcactaa acaatcgatg
      721 gtaaaagaat ataagtaaga tgagtgtttt ctgccaaagc ttagaaatcc attatatgat
      781 acagtttgct gcagacctcc ttggagcttt tttcacttaa agataattta tgacaagaac
      841 agagaggttc ttgaaaatgc tata
//
LOCUS       KCLJ01003284             622 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 365807cal ultra-conserved element locus
            uce-2206, sequence.
ACCESSION   KCLJ01003284
VERSION     KCLJ01003284.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 622)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 622)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..622
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="365807cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>622
                     /note="ultra-conserved element locus uce-2206"
BASE COUNT          207 a          130 c          103 g          182 t
ORIGIN      
        1 attccagtgg gaaacataaa acaggttcca ataattagat ccatttacta caaatgaaat
       61 tacaccctgc ttaaaaaaga gttggtcagt ttccatttat gcttttaccc attcccctag
      121 catggatgtt tcattgatgg ctgagggtaa cacttcaaaa atgaactagc taaacaaact
      181 tcccagcagc acttgacaga gctacaccta ttcttcccca tttccaaagc agtacagaat
      241 taattaccag ttctatggat ctattgtaag tataatagac taaagagcta tcacagacac
      301 atttattgta aaagcacaat cccaagagtg tctagtagag ggccaaaacg attaacacaa
      361 atgctttgtc agatcaaaga taaaacctgc accgcccaat tgaggaatga attagaacag
      421 tgggttatct ttcaaattaa ccagggcagt tagtgaggaa aatttcatga aagtgtaatt
      481 cttagccttt gtgaatccac acagcaggca ttctgccagc tgacaagatg atgaaatttt
      541 catgcttaaa aaagccctct tcatttccca atttagatta gctagcgttt ctctctcttt
      601 tcatctattt gctcttctga ag
//
LOCUS       KCLJ01003285             708 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 365918cal ultra-conserved element locus
            uce-5966, sequence.
ACCESSION   KCLJ01003285
VERSION     KCLJ01003285.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 708)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 708)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..708
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="365918cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>708
                     /note="ultra-conserved element locus uce-5966"
BASE COUNT          179 a          161 c          183 g          185 t
ORIGIN      
        1 ccctgaactt tgggagattt aaaggttatt cccgtcactg gcggcacaga gcgctcccca
       61 tgactggcaa cttgagggag catgcagttt ttactccatt gactcttggc taccgttttg
      121 ttcgttctgt attcttgaca gcaaattgat ttaacttgca gcaggagtgt gcgagcgagc
      181 ccgcaggaga gaacgtgtga atgtgaaatg tagcggggag caaggcgagg atactgaatg
      241 gcaacattta ggcattgact gtgacattgt attaaccttt ttaatggatg tatgtaataa
      301 agtgacatgt aaatggagca caaggggaga tatgacacta tatctggaaa aggataaaac
      361 agtcagtgaa tactgggcta ttatagcagt ttgcaaacct tggataaact cagtcagcgg
      421 ttgtataatt ggttattcaa tcccaagcct tgttcacagc tccaagccag gaacagaggg
      481 acctgttgcc aatttgagtg aatgcagagc ctgtgctcgg ccggagcccc tggctggagc
      541 cagccctttt cctgtgggct gccttccacc gcgtctgcca ctggcgcgcc cacagtggcc
      601 cttttgttgt caggggctgg ctgctgctcc cctcctttgc aaaacggctc acagctacac
      661 aaatataaga aaatggcaaa agggacttac tgtagctttt ctctcacc
//
LOCUS       KCLJ01003286             627 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 366024cal ultra-conserved element locus
            uce-4024, sequence.
ACCESSION   KCLJ01003286
VERSION     KCLJ01003286.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 627)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 627)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..627
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="366024cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>627
                     /note="ultra-conserved element locus uce-4024"
BASE COUNT          143 a          140 c          127 g          217 t
ORIGIN      
        1 acgtgtgagc ttccagccac gcagcctgca ccctccattg gctaaccacg aattcagcct
       61 tgttggaaac acaagcttga agaaggttct tgttgttgtt ctttacatac tttgttttgt
      121 ggtcctcgtt actgacggct gcttttgttt gttccctttt tcctttgtcc atttgacttt
      181 cccggtgtgt gtgttgctac cagtttctat tgctccaccc cctcccccta tgcctcagtt
      241 gactccacag atacctctca caggcttcgt ggccagggtg caggaaaaca gtaagtttgg
      301 acaagctgag ctgttaaagg gtagagccta ctctcttcta gcatgcatgg ctggcaagtc
      361 agactctatt ttgtttcctt ttccagaagc taataccatc ttgcattcta gtgtcaatat
      421 gctattggag ctgaagggca cactcttcaa tattttgtaa cacgtgcatg attattactg
      481 acctgcttaa gtcctctgca aatttattac agaagtgtgg catatgtttg gtgtgaatat
      541 aaaattgtat tttaattgaa aataatttca cgttgaatca ccctgccttt ttcagtaggg
      601 ataattgatt agtttttatc agaaagg
//
LOCUS       KCLJ01003287             613 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 366132cal ultra-conserved element locus
            uce-2000, sequence.
ACCESSION   KCLJ01003287
VERSION     KCLJ01003287.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 613)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 613)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..613
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="366132cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>613
                     /note="ultra-conserved element locus uce-2000"
BASE COUNT          183 a          114 c          151 g          165 t
ORIGIN      
        1 agggcgatga gactaaataa cacagccaag ttaagaagga gccaagggag gtggcggcga
       61 ggagaaactc tagaaaagca aaactggatt tcttctggaa agtgcagaat tctttagttc
      121 tttggttcca gagagagcgt gaagatgctt gtgccaggcg gcaccggagt ttgccaatcg
      181 atccttctta ttctgtgtgt acatgcgaag tttggatcat gttacatgaa tagtgccagc
      241 tgggggttct ttgccagcac catgccaagt gaaataatat atttactctc tctatatttt
      301 acaccagtgt gtgcctgcag cagcctccac agccactata ggtttttttt gtttggggtg
      361 aggagcaggg ataaggagag caggtttcat gttcctattt gcagaacagt ttgtttagct
      421 aggggaaaaa caagtccaaa gagcctatgg gcttttcctg tttctaaact ctcagtacta
      481 aaccagaaat ataaattatc aaatcccagt gcccagaagg gacaagtcta tcaaataagc
      541 agtatttact attgtttaga caggagatgt acaaaaggaa aggagatgga cttttcactg
      601 agtaaccagc aca
//
LOCUS       KCLJ01003288             770 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 366236cal ultra-conserved element locus
            uce-16, sequence.
ACCESSION   KCLJ01003288
VERSION     KCLJ01003288.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 770)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 770)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..770
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="366236cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>770
                     /note="ultra-conserved element locus uce-16"
BASE COUNT          244 a          157 c          153 g          216 t
ORIGIN      
        1 catgtccgca attgattcag aaaaagacaa tattttatcc gtcctctttg gagttcaagt
       61 atgaatggtg aagcaaaaga gagtgaaact gagggaaaca tgaaaagctt gatttgttag
      121 gacccctgct gtctgaaaag agatcaaagc tcaggaggag gctgtaaaac agccgaatgc
      181 actgcacaga aacatggcct gtggcagctg ctctgggcac gctctcacaa cacaggtgta
      241 cctccaagtc tgctctgcca gctgaatcat gggaccaggc tacctcttct ccttcttcat
      301 tatttcagct gcagtcactg aggagatgtg agctccatcc atcacaatgc acaaattcac
      361 agtgcgcaga ttcagcacag gcctaattaa agcttttcct ttcatttgtg gagataatta
      421 gactttcatc tcaccaggaa gcttcagaaa gatctatttc tttcttcaat aagagctaca
      481 tcaaacaaaa gcagatttta atcgtctttt ctttggggca tgagtcaata atgaaagatg
      541 tcatgggtaa caaaaattgt gtgcaggggg aaaagagacc aagctatgtt ctttaattaa
      601 caccatgttt gcaaacatca ttaatttcac tcattaaaat gatttttatc tacaactgat
      661 tgttgataaa acaatcgatt tgaacatctc atctctttca tgctatgcag gaacccattg
      721 cagactgtta agcaacatgt gagaacaata aaaaatgcat atgtgtgtgt
//
LOCUS       KCLJ01003289             673 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 366350cal ultra-conserved element locus
            uce-556, sequence.
ACCESSION   KCLJ01003289
VERSION     KCLJ01003289.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 673)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 673)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..673
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="366350cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>673
                     /note="ultra-conserved element locus uce-556"
BASE COUNT          232 a          125 c          115 g          201 t
ORIGIN      
        1 gtagcaataa cgatgcggca gagccattaa catattggca gaccccagga tggattatcg
       61 acattgatta tttcatggac cactgatatc catttgttaa gagaagctcg aagatggcct
      121 ctctctgact gaaatctttt acgagcagac agcattttaa gtattaggaa cctgggattt
      181 gggcaacctc tgccctagac tgtaacaaaa aattaaagtt cattcttcac tatggtctta
      241 atttctcaac tcatcataac catgtcttct ttaaaaatta atgattgcca gcatttagcc
      301 actggttgtt gctatgaaga tctatgcaaa aagcaaggat ccctatagag tgcatgatat
      361 atggaattct ctttattact acaataaaac ttactgacat ttcaatactt ctgcaaatag
      421 cattatagta tcaatcttct gaattaggtt gaaaattaag ttgtaaatta aaagaaagtg
      481 tactttggaa tacaacatga tatgtcacct agaaaaagac ctttgtgcat aacagagctg
      541 agcagaaaaa ctgaaagata agcccaggtg cctctaaagt gcctatttca tcataaagaa
      601 tctaggttat atttcacaag aagaatactg tctgaaagcc cttatatttc acctccagaa
      661 aacagattct gaa
//
LOCUS       KCLJ01003290             581 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 366460cal ultra-conserved element locus
            uce-4840, sequence.
ACCESSION   KCLJ01003290
VERSION     KCLJ01003290.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 581)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 581)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..581
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="366460cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>581
                     /note="ultra-conserved element locus uce-4840"
BASE COUNT          153 a          161 c          134 g          133 t
ORIGIN      
        1 tcagaagttc ctgaaaccaa ggcagtgctg agggggcttt tcagtgcatc caaagtgcta
       61 atctaatcaa attttttacc ctccactgat agttctgttt tgacttggtg cttagattcc
      121 acatctggtc actgtgaaat cccaaggaag ctccttgtct gggtctcagt cactgcatga
      181 acagcctgca aagggactgg ctgggtttca ggaggctctg acggtgacct ctcaccgcac
      241 tgagatgcca aggcagaact cggaccccac ctcagaaaac cctcctctgc cccctcgcat
      301 tgaaaagttt gaccgaagtt cttggttacg gcaggaggaa gacattccac caaaggtaac
      361 acaatcactc ctcactttca gcacctggca aagcagagtg ggcaggactg aggctctgca
      421 gcgggggctg acccacccca tttcctcagg cagtttgcag gacgtgctgg gagctgctct
      481 tggctgcaaa aaaacagcac tgccctccag caaagaaagt tctagagctc agacagaggc
      541 caaaacaaat taatctcttc tttccctaaa aaacaacctt c
//
LOCUS       KCLJ01003291             505 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 366570cal ultra-conserved element locus
            uce-1555, sequence.
ACCESSION   KCLJ01003291
VERSION     KCLJ01003291.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 505)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 505)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..505
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="366570cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>505
                     /note="ultra-conserved element locus uce-1555"
BASE COUNT          152 a           87 c           88 g          178 t
ORIGIN      
        1 ttttcctaac aagcaggatg ctaattcttt aaatggttgg acatttacta ttttctggcc
       61 attgactacc ccaagcaatc atatttgatg ctccttaatt agagtagcct tttttatttc
      121 caggttcttt tccacctcag caatcgagac aatacatttg cttaccacgc tgctctccta
      181 agtgttcttt tgcatgtaaa ttaatcttga ttcagtttac actgtcatgc tgagtggtac
      241 aaattgccta taacaataaa acagcatgag ttaaaaataa aggggggtga aaaagcagat
      301 tgaatgtgtg ccttacttga taggatgtta ctttgcttta tgccaataca ttagtcgacg
      361 ataatgaatc ttctgttctg aaaagcatgg tttagttgat ttttttaatt ttacttcaat
      421 ggagcagtac cttgtctttt atagaacaag ttagacaaac cattaatgac aagagtgtta
      481 aggttaaata tgaagcaatg cattc
//
LOCUS       KCLJ01003292             599 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 366677cal ultra-conserved element locus
            uce-6517, sequence.
ACCESSION   KCLJ01003292
VERSION     KCLJ01003292.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 599)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 599)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..599
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="366677cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>599
                     /note="ultra-conserved element locus uce-6517"
BASE COUNT          185 a          126 c          127 g          161 t
ORIGIN      
        1 gaaagtttta catttagtca gtgacatgtt atccacatct gatagtgaca caacaaggtt
       61 ctgggttgct cattgcccaa aggaaacatt tctggcatat aaacaagctg atagttcaaa
      121 gctaatgata ctgtattgaa aaaatgccat tgtccttcat ggggtgtccc cagcagcaaa
      181 acaactgcca gttaagcttc tacaccacat atgctcagct cgtgctactt tctgctagat
      241 tcagctattg atgcagcagg tcacaatgca atttagaagc aattaaaagg taatgaatgt
      301 gctgaactga aaccactgcc tgggaggctt tttctgcgtg cgagggagat ttgtgtcctt
      361 cagtgatttc tgttagtgaa acagcaaaga aaaatgcttc tgaaatgggc ctcagatgtc
      421 tgaaggacag cctgaaatgt gagcactgct gaagtgctgt gatacaccag cttaaactcc
      481 tacacacaaa atcaaaggaa cttcttaact atccaagaat tctccctcca taataaggct
      541 aaggggaaaa agactcttgg gataccatgc agtttccaca tactgctgca tagctgtgg
//
LOCUS       KCLJ01003293             622 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 366785cal ultra-conserved element locus
            uce-5589, sequence.
ACCESSION   KCLJ01003293
VERSION     KCLJ01003293.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 622)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 622)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..622
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="366785cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>622
                     /note="ultra-conserved element locus uce-5589"
BASE COUNT          222 a          123 c           94 g          183 t
ORIGIN      
        1 cttttcaatc tgaagatttc aaaactaaac acatgccact ctccacacac aacttgtctt
       61 actgaagtcg acaaattaaa agcccgtgtt tttcattatg ctgaagacag aataaaaata
      121 aagaaaagga agccacataa gaaagaaaaa cagaatgaca gtgatgtttt agtttacact
      181 agatatggca acacatacaa actgtcaaaa ctatggagtg aaaaaagctg ttatcaagca
      241 actgtcaaga gagtcctctg agatttggaa atcttgtgtt tattgtaact actgcacatt
      301 acacaaagaa agaaacatcc ctcttcttac cattgctgct aaatatcatg caagagaacc
      361 cagacttctc tctcaccgtt tagattaatt tttttttcct gtgcaattct gtgcttgaca
      421 gcacagggcc cctccttttt caggtattat ttggtcaaag ttcagagaga aacttgaggt
      481 tatataaaac attatttcat tttcaagaac tgtcaacacc cattttatgt tgttaacttg
      541 ttgtccatca tttttgacac caaaatacac acttaaaaca cgtacacaga aagagcaaag
      601 ataatggaaa cagctatttt ac
//
LOCUS       KCLJ01003294             781 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 366898cal ultra-conserved element locus
            uce-2102, sequence.
ACCESSION   KCLJ01003294
VERSION     KCLJ01003294.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 781)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 781)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..781
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="366898cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>781
                     /note="ultra-conserved element locus uce-2102"
BASE COUNT          271 a          135 c          118 g          257 t
ORIGIN      
        1 ggtttggcaa aacagactct tttagtaaca tctctagtaa aagttactag ttattataca
       61 gaactaatac ttatgcaagg catagtagta gaaactgtct tcatttctaa gatttcacac
      121 attccctaat taattcaagg ggacttacag ttttagataa cattcctcct tttatcacct
      181 gccatctagc agttggtata atgtcaacac ttacattttt tttccaactg aaatcatttt
      241 taaaacattt ttatcctaaa atgttctcct cgatttttca aaaattatct taaagataag
      301 agatttcttt ccatttcagt cccacaacaa cgagaatgtc agcacagctt ttttgacaga
      361 caaattattg aatcaaagaa agaatatgcc attaagccca caggttagga agtgtcagga
      421 atggtttaaa gagatatccc atttatcttc aaaacatgca cggaatgtca ctaatgtgtg
      481 tttatcatgt ataatcagac aaagaaaata tcgaaataaa gtactcctgc atacaataga
      541 agtctccttc catctctcaa gatatcagtg ctattcaaat agaataataa tgatgaaacc
      601 tcctttcttg aaaatggaaa tcaagtgaaa tgtagataga aatgattttt tgtagttgat
      661 gtacgtttct aaagtgcatt aacaggaaat ccagaacttt ttaggtcaat tatattgtca
      721 gtattgtcaa tgccactgaa atgaatacct aagcagtgca tattcttgct ggaacagggt
      781 t
//
LOCUS       KCLJ01003295             602 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 367005cal ultra-conserved element locus
            uce-3622, sequence.
ACCESSION   KCLJ01003295
VERSION     KCLJ01003295.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 602)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 602)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..602
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="367005cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>602
                     /note="ultra-conserved element locus uce-3622"
BASE COUNT          154 a          118 c          130 g          200 t
ORIGIN      
        1 aagtgacctg gattggcttt taaaaatatg atttgcaaac ttgttggctg ggattcttct
       61 tttggaggat aacttaattt gtccacataa gtcccctgtg tcaaatttcc ccttgacttc
      121 tatttcacag ttcttaaacg aaacaaattc caaactgagt tttctgcaag ccgccagctt
      181 tcccaagtgt ctcatcctct cccctctgtc atcctgaggc aatgtgcctg catttgtgtg
      241 tagatttata gtttatcttt atctatggct tcatctgtag gtagctatta tagccgcctt
      301 gcctggatat tgtttgggcc tgatagatct gtctgtagtt catcaaaggg gagctgagtg
      361 gctaaaagcc attgggtcca gctgaggatg aaatacgagc catcagcctt ggtaatggct
      421 gtaaaatttc ataattacac ggcctttatt acattgcata atgatcctga agcagtatgg
      481 aacaattaat taagattttc aaccgtggct ctttcagaaa ttggtgctag tggctgagaa
      541 atggggaagt gtcttgtcct aaaagcatta gggatgctta agaagtactt cctgggtact
      601 ta
//
LOCUS       KCLJ01003296             842 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 367112cal ultra-conserved element locus
            uce-3150, sequence.
ACCESSION   KCLJ01003296
VERSION     KCLJ01003296.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 842)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 842)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..842
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="367112cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>842
                     /note="ultra-conserved element locus uce-3150"
BASE COUNT          222 a          182 c          198 g          240 t
ORIGIN      
        1 ttttacagaa atgctatttc atagtaatca aacagtagca agcaaaatgt aatagagtat
       61 ctatattact acgtatctca tttaattttg tcttgttgaa tggccatatt aaatatggag
      121 ttttcctgct tatatcttcc aaagaactat tgcatgggct gtaaaccaca aatagcatgc
      181 gtgtgcaaaa tatccatgtt tgcgtgcttg tggacaagct cctgcagtgt tctaaaagtg
      241 taaagaggaa aacctgcctt tagtttccta ctctgctgga tagctgcaag tagaaaatgt
      301 taaaagcgag acagtatgtt ttatatttta cttaagggtt atttttgtgg ttttatctga
      361 tccttttagg atctaaacag gggcccttat tctattgtac ctttttggct ttgtttagac
      421 cagtgatact caacctgtgg ctctagagcc ggatgtggct cttcatggcc ctacaggcgg
      481 ctctcgcaat gtaggcatct gatcggcgct ccactctatc aggcagcgcg gggagcactg
      541 agcaaatgga ccagcagtgt gggagtcgct gaagttcccc ctcccatagg gggaaagaaa
      601 aggagctgct gggatccccc cacaggtaag agtagagatc acctcccacc cagcagctgt
      661 ggggcagaat aaaaacttgc ccttttgccc cttccacccc tccaccccac tccctcctag
      721 cagccagaag ggattgaaga cagaatgctg ctgggagaga ggatgctgat gtgtcatgtc
      781 gtgatgtatc aatgtgtggt ggcattaagg cagcatcatc acacattgaa gtgtcatgat
      841 gg
//
LOCUS       KCLJ01003297             880 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 367225cal ultra-conserved element locus
            uce-2028, sequence.
ACCESSION   KCLJ01003297
VERSION     KCLJ01003297.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 880)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 880)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..880
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="367225cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>880
                     /note="ultra-conserved element locus uce-2028"
BASE COUNT          273 a          167 c          155 g          285 t
ORIGIN      
        1 cattcttggc tgaaactgca cattctcatc tgcctgaaaa tactcagcag tcgttcatga
       61 aaaatgtttt tgaactaatg agctatattt gcattcccct tagaaaggat tcagaatttt
      121 tcatctacac tgtgccatga aaaatggatg tgtttttcac agaggtaatt tgaacataaa
      181 ccaccgcatc aatgggaaga caacctttgc agaaactttt taacttagca cattccattt
      241 gttttcactg gggaaggtca aacttatgtg agagatgtaa atttcatgca caaacctagg
      301 tgctgatgag atttgttttt gtagataatc tgcagcagag aaatttttca taatgtcacc
      361 acaaaataaa ttaaaatgtt catcttcata tggctggttc cattgcatta aaataaatgt
      421 tgcaagctca tttaattagt atagttagga atgtctcttc cctgcttcac tgactctcca
      481 aatcacaagt taatttgtca aaatcagacc attgtttttc cttcattctt cattactgaa
      541 aagacagccc catttaaata aatgtttatg ctacagagag cagagcagtg aacaacccca
      601 aatatttttc taagcacatg ttggaaaagt ttgggctgta aggagccgga gcgtgcgtgt
      661 gtgttgttat tggatatctg acttgctgga aaggtacaaa attgagcagt ctgctgtaac
      721 tgatgatgta gcacacacca tctctcatgc cagcggctac atgcacttgg aagcagtttt
      781 cttctatgtt ttcaatgatg acaaaagata caatctctat aaattaccct aatcaaatca
      841 ttctcttcaa gaactcttgg ttaatcaatt agtcagtgct
//
LOCUS       KCLJ01003298             505 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 367334cal ultra-conserved element locus
            uce-1758, sequence.
ACCESSION   KCLJ01003298
VERSION     KCLJ01003298.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 505)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 505)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..505
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="367334cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>505
                     /note="ultra-conserved element locus uce-1758"
BASE COUNT          172 a           75 c           86 g          172 t
ORIGIN      
        1 aattgtaagg aaacagtagt tggtttaact tggtctcaca gtacaagctg tacattatct
       61 ttaggttttc tttgctttac atacagtcag ataagttttg gctccttctg tctaatgctg
      121 tttcctctaa tggttgaaga aatggaacat tatactacct aacgtgtggg ggtcacatta
      181 atcacagaaa attcttttaa tgtctcagaa gtaactgtca aactggacat actgaatcta
      241 tttaaactaa agcatgccat tttttatcta cagtgatctt taattcacat aaaagggtca
      301 agaaaatgtg attaagtgac agttttaaaa tgtactataa tattaaatag cttgattaag
      361 tgacaactat aaaatgtaat acaatattaa gtatctggct gtgtcccaaa agaactttaa
      421 agtattttga atggtttggg aattctctag cccatcatga gttacaaaag agcattttta
      481 ttaaacataa acaggtgaac tcagg
//
LOCUS       KCLJ01003299             601 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 367441cal ultra-conserved element locus
            uce-838, sequence.
ACCESSION   KCLJ01003299
VERSION     KCLJ01003299.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 601)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 601)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..601
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="367441cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>601
                     /note="ultra-conserved element locus uce-838"
BASE COUNT          166 a          132 c          106 g          197 t
ORIGIN      
        1 aataaatgtc cctgccacta taatatcaga ggaatttata tacctaattt taaacagact
       61 cattcatttt ccctaaactg acactcttcc tggcagaaac tttcaaatct aatcagtcag
      121 cagcactagt cagggttttt caccatttgc tcagcagttc ccaggtatgt tggcttcata
      181 tactttccca ctgtaccttc cacagcctag ccgacaggct ctggacagca ggacagctag
      241 atccaataaa tctgagacct gtctaggtgc ttcatttatc aagaggccta atttacccag
      301 gccctttaga ctaattgcag atttgtaaaa aatgctgata atgtagaaca gtgcattgtg
      361 aatgtccctt gccatatttc tgctaatgtg tttcatctgg agtacataaa gagacaggga
      421 tgctgatttt agacacagca ctttggggct aatccagtta aatgattatc cctaaaaatc
      481 tgcagtgatg tcattttccc tatagaactc tgccagttgc cttgtttgct ttattgtgag
      541 aagtatgtga tcccggcttt agaattctct ctatattttt gttctaatgc attgtaactc
      601 t
//
LOCUS       KCLJ01003300             709 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 367551cal ultra-conserved element locus
            uce-1677, sequence.
ACCESSION   KCLJ01003300
VERSION     KCLJ01003300.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 709)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 709)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..709
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="367551cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>709
                     /note="ultra-conserved element locus uce-1677"
BASE COUNT          222 a          113 c          136 g          238 t
ORIGIN      
        1 ttcaaaggtt tcttgaaatg agcaagtcaa gattcatcaa ctttaaatca tgctttggtc
       61 ttgcttttga aagtacctaa tattttctgg ccataccccc tatgttattt aaatgctggt
      121 aatcttgttc atggcaattt caataagcca cagcagacat ataatgcttc ctcttttaat
      181 aggtgcaaaa tgagttattg tcacaaagca tatatatgaa aaaaggatgt gaaaagagaa
      241 tcctgcctaa tctctgtaat aagggcttgt gagggtgcta acatggtcac ctgaattatg
      301 catgtctatt gtgttcaaat atcataaatc gatgcatgaa taccctccaa atcattttca
      361 gttcatgaac atttatatac agagctcttg agcactgcaa agacaattag tcatatttgt
      421 atgccggaat taattgagag tgagatgcgg gaggcagaaa gagagaacaa agaatgcttt
      481 ttgtcagttc ttccaactga cagggataat tagatatatg aaattgaaat tcctcagcag
      541 ggggtttctg ttgacaatga attttctttt gattccattc tgttattctt ttatgctgtc
      601 atctgtggca atttgttatt cagcttgaag cttaaaaaag caaagcattc cgcttttatg
      661 agtagatgat gtcagtttgt acactgctgg gaaatagata ttaaatgta
//
LOCUS       KCLJ01003301             698 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 367664cal ultra-conserved element locus
            uce-735, sequence.
ACCESSION   KCLJ01003301
VERSION     KCLJ01003301.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 698)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 698)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..698
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="367664cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>698
                     /note="ultra-conserved element locus uce-735"
BASE COUNT          260 a          128 c          130 g          180 t
ORIGIN      
        1 tttttaattt acctaccacc aaattaagca atgctggttt taaagtctta aaggacaact
       61 aaaccaaagc ataattctca ctgtggtaac atttgcaatt cctataaaga aaccaaatgt
      121 ttatgaaagc gtgtaacaca ttcagaaaaa catgcactta aacattcttg gcatgtaaaa
      181 gtggaaggta ttgcttgaaa tccgtaacaa gggattagat gtccttaaag acagttgttg
      241 cttggaatgc ataaaatgtt taatgaagta aagtttaaaa acctgttgcc atgagccaaa
      301 aatactggat gtgaaagcca gtgatttagg ggagacaggg gaagaagtga tttgttcccc
      361 tgatctgcgt cttcgacgcc cagtacccac accactggtg taatgcagcc aggtaccaat
      421 acactctggg ctagacacac tcagggggct ctcttcctgg aagtgagaaa gggggcaaaa
      481 aacagcaaag catgcaaagt tagattcaac agagccaaat gaacagaaaa gaaaaaaacc
      541 caattttaca tactaccaaa actaccaaac agcaaagagc gaagatatta gaaagttatc
      601 agtttcactc ttatcttcat aactacaaca cttcaatcag atttctagta gactaaatat
      661 gagagaaaac atttgttatt gattcataat tttaagaa
//
LOCUS       KCLJ01003302             524 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 367774cal ultra-conserved element locus
            uce-6076, sequence.
ACCESSION   KCLJ01003302
VERSION     KCLJ01003302.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 524)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 524)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..524
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="367774cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>524
                     /note="ultra-conserved element locus uce-6076"
BASE COUNT          180 a           93 c           77 g          174 t
ORIGIN      
        1 ttgccataca aaattagaaa tattttccta attccttttc ctaaaagtct ctgtggaatt
       61 tgctttactc atttcaattc atagatagta cttctctaaa gtagcaaaga tatatccaac
      121 tatgtttaaa tatggagctg aaaaccctaa tcgcaattta atttgactaa atgcttacat
      181 actttatggt caatcatcca gatcttttac aaggttcctt ggctttggaa ttagtaatct
      241 caaaacatat gagccttgtc taacatgaca tatattgaaa cagactgtgg aacgatcact
      301 tagagatgag aaccttgcta cagctttagt gaaccaaagc taagaggaaa attattcaat
      361 tatagtaaat ttacagtaac ttcatatttg ataaaagtgg ttcttctatc atcagagcat
      421 catactgaaa acccttgagc agcaaaatag ctctagaaat gtaaggatgt tttagccact
      481 tattaagaaa acccatctgt cctgattttt atgaacactt tggc
//
LOCUS       KCLJ01003303             764 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 367882cal ultra-conserved element locus
            uce-6820, sequence.
ACCESSION   KCLJ01003303
VERSION     KCLJ01003303.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 764)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 764)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..764
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="367882cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>764
                     /note="ultra-conserved element locus uce-6820"
BASE COUNT          207 a          172 c          174 g          211 t
ORIGIN      
        1 tattgttttg gttatgcaaa tgaaacaggt ttagtgaatg aatgacttcc tctcattggt
       61 aaaacacttt gatacctcca acttgcccta atctttcaaa tggattggtt tcagtgggca
      121 ggattacctg aagtcccatc tgacctttcc cattctgaaa aagacacttt acaaaatatc
      181 cccagtgcct aaacaaacca aggaggtatc tctggacccc tctgcattcg ctctccagac
      241 cagtcagctc tgccaggcac tgcctggcac attgagcaac ttttgtttta ccatagttta
      301 aaataagtta tcaaccaatc ataaaatgaa ttttttggtt tctcctggct ccatgaacac
      361 aaagaggtgc acgtcctacc ataggaggaa gcaatggctg ttaagtttta cagttatagt
      421 ggaaagcact gatcacagcc tgccggcctc actactggat gtgacaggcg gtggaggagg
      481 tggcttggca acacatgcag gtggggttga cagatttagg ggggattagg tcgaggtcct
      541 cgtcatccgg gatctcatct aaccggtacc catcctttag cagctggatg ttcaagtctt
      601 ggttgatctg ctacagacaa agagacaaac agtcaaacac ttgggacttc ttacttccag
      661 tgagatgaag gattgtttgg gaatgtattt ccccatcatt aacaactgcc ctacagtcct
      721 agatttgacc acaggtgagg ggaggtagct tctccagagt agga
//
LOCUS       KCLJ01003304             749 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 367969cal ultra-conserved element locus
            uce-1135, sequence.
ACCESSION   KCLJ01003304
VERSION     KCLJ01003304.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 749)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 749)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..749
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="367969cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>749
                     /note="ultra-conserved element locus uce-1135"
BASE COUNT          226 a          153 c          143 g          227 t
ORIGIN      
        1 gccctcgctc taacacatcc tttgtggttt aatttaaatg gtgattttta ccgtgacatg
       61 tgatgctcat ctgctaacct ttccccaatt ttaaagaagc atcaaatctt ggaatcctct
      121 atctatagac acggtagttt acctacttag gttggtacct aggagcttgt aaacaaattc
      181 ataaatttgt catgatgatt atagtgttgg caaacacaat ggttgatcat attataaatg
      241 tttatcaaca cccgcactca cccacctgct aagaggtgct acgctttaat gaaattgttt
      301 gaatatcaag gctggttgct aagatacaat gttcttgtta ccagggatgt gatgcttaca
      361 gatttctgtt atcaaataat gattagagat gtgctaacct caaggtgctc ggtgcagtgg
      421 aaggcttact gagccacaaa ttagtaaact gtctgcctga gcagacactt acagaaggag
      481 cacatgtgca tcaaacttac cgagctgaca tttttaaaga agacaagatc tggcagtgta
      541 aatgttccta tagatgatga aagactgtca taggaaatgt ttacatgatc tgttgcctag
      601 cacaatgtct tcgtgccatt ttccctcccg atgcagagcg gtgttgaaat caccaagtca
      661 aataactgct ttgctctttg ccactcacct cttgaaatta cacattcaca aatttctatc
      721 taagggccac acaaagatgg aaacaaaga
//
LOCUS       KCLJ01003305             782 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 368079cal ultra-conserved element locus
            uce-146, sequence.
ACCESSION   KCLJ01003305
VERSION     KCLJ01003305.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 782)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 782)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..782
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="368079cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>782
                     /note="ultra-conserved element locus uce-146"
BASE COUNT          248 a          150 c          162 g          222 t
ORIGIN      
        1 gcaatgggaa ttctttttaa tgaagcttga tttaatccca ttattctaat aaagagtaat
       61 caattggcag aaaatctgaa ggtctagtga ttggagttgg gttgtttttc agacaggcga
      121 tacaatggag gagaagtgag ttaatcagct tttggtccac taatccccac ttcctgcagc
      181 cacttggagt tttgaaggag ggcaatttgg aagctgtctt agcataaatc tccagcaggt
      241 ctgtggctgt ctggggggaa caagcccctc agcattcacc aagacacgct tcaaggagat
      301 tctactctta atccaattta ctcagccgaa taagtcccac tgcttcagct tgccaacaaa
      361 ttaaaatcca gcttcataaa aacaccttga atttggaagg tattggctgg cctgctagac
      421 ttgaaacttc atttattctg gctaacttct caattatctt cccagcagtg gagatgtgta
      481 aaagtgcaaa aatcaatagg attctattcc ctttctattg gaaagggaaa aattaatgag
      541 ataggacact ctcttaatca gaaataaatg ttttaattca gataatgaca tagttttccc
      601 tcgctgaagg atgacaaatg ctgggctgca cccccagcag aagcagtttc aattttattg
      661 taaatataaa aggtattgat cggtgagatg cacaaaccct attgcttaca aaagccattc
      721 agggggactg ggaaaactat taagcactgg gtcagaaatc aataaacaac actgaaatgt
      781 ag
//
LOCUS       KCLJ01003306             397 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 368297cal ultra-conserved element locus
            uce-4440, sequence.
ACCESSION   KCLJ01003306
VERSION     KCLJ01003306.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 397)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 397)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..397
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="368297cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>397
                     /note="ultra-conserved element locus uce-4440"
BASE COUNT          140 a           55 c           76 g          126 t
ORIGIN      
        1 tcttcccact gaagcaagca ctgttaagct gctataactt ttagagcatg aaagcaaatg
       61 ttgtaaagag gtcactgtaa aggtcacgca gcaggtttga tgtgtcagtg gataaatgat
      121 gggatcacat ctggaacagt ttggtgaata aataaaatgt gaaagctcat atatcactgc
      181 ccaccttcca atctgtaagg gaaagagaaa ataaattctc taataacctt gtaaagcaca
      241 taaaagatat tgaataaact cttgaaattt tgtgactaaa actgtctgta ttaaataatg
      301 attttaagag tggcaaaaag cttgaaatac agtatgagtc ttccttgtaa aatgttgttt
      361 tattttatgg tttatttatt agactatact tggatag
//
LOCUS       KCLJ01003307             779 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 368399cal ultra-conserved element locus
            uce-5387, sequence.
ACCESSION   KCLJ01003307
VERSION     KCLJ01003307.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 779)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 779)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..779
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="368399cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>779
                     /note="ultra-conserved element locus uce-5387"
BASE COUNT          252 a          149 c          155 g          223 t
ORIGIN      
        1 aatgagtaaa taaaaacctg ggaaattctg tactggtcat gtggggcttt cccttaacat
       61 tcaatttaag aatattaatt tactgttgtt tttatgctaa aagaagtgaa caagggagga
      121 gatctattga aatacagcag ctcagaggat tttgagagca gtaagaaaat ataagtatca
      181 aaataattca gaaacagtac aaggcacagt ggcacattat caatttacaa catttaaatt
      241 gataaatgct tggtggtgaa ggcctacaag ggcactttga aaagcaaata gcgacctgct
      301 gaagaaattg atttttcccc cccgaaaatg actgcatgat gcatcatttg actgcatgct
      361 gtccaagtgc ttgacagaga taatctcagc aatcccacgg gtgaccttat cgttctcacc
      421 agggcaactt tgtctaggtt ctgactttgt gcatgtcaag gtttcttcag gcaggatcct
      481 tagggggaaa aagttcctct gttcgatcca gatattgaac cactcttgaa ggcactcccg
      541 aaaaggcaag ttttcttcat aattatgaat gaactgaaca agggaaaata tctatagaca
      601 cagtatcttt gctgaggaca ttattgcctt ctcagtgagc ttagctctta aaggagaaag
      661 gatacctgcc attagaggtt atcagataca gttgaaagac tccaaaatat atggcactct
      721 tctacatagc agaaatatcc cacctgcttt ctttatcaca ctcactgttc acagcttta
//
LOCUS       KCLJ01003308             500 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 368511cal ultra-conserved element locus
            uce-3053, sequence.
ACCESSION   KCLJ01003308
VERSION     KCLJ01003308.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 500)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 500)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..500
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="368511cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>500
                     /note="ultra-conserved element locus uce-3053"
BASE COUNT          142 a          115 c           92 g          151 t
ORIGIN      
        1 tattgcatgt cagccaccag aaagaagttt ctcttcaata cccttttcct aaggaagggc
       61 ttgggaggga gcagtttaga ttttttttct tctgtgatgg gattaagtgg gacctgctcc
      121 tttaaaaagt gtccccttcc ccatcatcct ccctccttcc aattacagca ctaatttcag
      181 taatggagca ttaatggagt aatggactgc tgaagctggc ctgaaggaac tgtagtgctc
      241 agcacaaatt gagtaaataa accatatatt agatttctaa acaatacttt tagtctagtc
      301 cccagggaaa gagagttgtc aagacttact taagtcaacc cagcaaaacg tatgcaaaag
      361 attcacccat tcatagcctg gaaaatggca ccagtggcct gaagcatcag cgaatctctc
      421 acataaatct ctcctatcct gacagacaga gctttgtgtt gtttccttct cccaatttct
      481 cttctttgat ttatttacca
//
LOCUS       KCLJ01003309             520 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 368622cal ultra-conserved element locus
            uce-7923, sequence.
ACCESSION   KCLJ01003309
VERSION     KCLJ01003309.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 520)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 520)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..520
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="368622cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>520
                     /note="ultra-conserved element locus uce-7923"
BASE COUNT          174 a          115 c          137 g           94 t
ORIGIN      
        1 aataaccgag gtgacgatga agtgtttgag actaaatcga gggaggatga ggctaagcca
       61 tttggtctgg cagtggaaga cagatctcaa gcaacaacac ctgacacaac accagccaga
      121 actccaacag atgagagtac gccaactagc gagcccaacc ccttcccatt tcatgagggg
      181 aagatgtttg agatgactcg cagtggtgca attgacatga gcaagaggga ttttgttgaa
      241 gaaagactcc aattttttca gattggtgag catacttctg aagggaagtc aggggacaag
      301 ggggaagggg atacaagtac agtcactgcc atcacacagc cacaggcagg ggacagcact
      361 gtagaaacaa acctagagag accagcaaca gcagttgaaa ataagcccgg catccaggcc
      421 agtggagatt gcatggaaca aacacttggt agtaactcac tggagaaatc atcggcagca
      481 gtaaacgctt ccaaagttga tcccaaattg cgcacaccaa
//
LOCUS       KCLJ01003310             628 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 368730cal ultra-conserved element locus
            uce-7192, sequence.
ACCESSION   KCLJ01003310
VERSION     KCLJ01003310.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 628)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 628)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..628
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="368730cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>628
                     /note="ultra-conserved element locus uce-7192"
BASE COUNT          204 a          114 c          121 g          189 t
ORIGIN      
        1 ctttccagca aaagtaacca tatgcttaaa gagaatgtct aaagctatta atgatgaatc
       61 atttgggcat ggcaagagtt cttcaaaaca gtttgtcagt gctggccaag caaagtcttt
      121 cagcaggaga tgagacagct atgccaccat gcaaatgaga caggcttgaa atatgatgaa
      181 tcttctatct ccttttccta ctcgactgac actcgctttg aggaaggttg taaatgcaag
      241 agagattgtg gtataattcc tcagactggc gtttctgccc cccagtcact attcgattat
      301 cttccaaatt gctgtgtttc agagagataa agatttttta tggcttgctg acttgaaaca
      361 accagaagag ccagaaaaga gatggctaac cggccatgca tagtaattcc attggtaaat
      421 gacaaaatct ttgtttgtat gacatttcca aagttactac agaagatgaa tctaaaatac
      481 aaaatgtcac atttggcatg caaaactatc acaatatatt tcagtataaa attcatagag
      541 gcgtttaatt tagaatgtgt ttaataacga aggctgcctg catcagtaat cctgccttga
      601 ggtttaaaaa gattgtctta tttattca
//
LOCUS       KCLJ01003311             337 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 368834cal ultra-conserved element locus
            uce-3219, sequence.
ACCESSION   KCLJ01003311
VERSION     KCLJ01003311.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 337)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 337)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..337
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="368834cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>337
                     /note="ultra-conserved element locus uce-3219"
BASE COUNT           96 a           72 c           60 g          109 t
ORIGIN      
        1 agagctcctc agttcaacca tgcaagctaa gaaaacagca gtagcagttt tctctttaat
       61 gggtctatgc acaaccagtt ttcaaaatta ttagagtatt cccaccaaat tatccctgat
      121 aattctattc tatgtttttc agaggaacag aacaatggac ctaatacctc aaatctctga
      181 ttgctgactt tctttccttt tttgttccag acaattttag gtcttggatc tcctgtggct
      241 tgacagatga atgaggcaac tcctcctgaa acccctgtct ggtcaacggg agttcttgta
      301 aactttggtg gtgctgaaaa tattaataca agcagta
//
LOCUS       KCLJ01003312             706 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 368944cal ultra-conserved element locus
            uce-1336, sequence.
ACCESSION   KCLJ01003312
VERSION     KCLJ01003312.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 706)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 706)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..706
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="368944cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>706
                     /note="ultra-conserved element locus uce-1336"
BASE COUNT          226 a          150 c          140 g          190 t
ORIGIN      
        1 actttattca tctgcagtaa ttcatcccat tcagaagaca ggatttaaaa atatttaaac
       61 aaggttgagg ataacaacta aaaggtgccc acaagagaca tatttaaatt cctgctaaat
      121 atatttacca aagtcaacag cgaagtttta tttggcaatt ctgcatttta aagctattgt
      181 ctcaattagg ccaaaaagga ggatactgct tatgactgca agtctctgcc tgcattcatt
      241 tattgttcag ttcacagtct ctgaatacaa cacaatcctc caacggagtc agctttcata
      301 attcagcagt acaaagtctg caaacacatg taacctagat ccatatttca cagtgacagc
      361 atatgatagc agaatgtgaa gtattaatgc tagtgtcact acagtcctac actctactgc
      421 actttaagag aaagcagctg ctgagatgaa atgtgtgcca actgtctgaa gacagaaaca
      481 taagaaacat tccttctgtt acaaagggag agacacacac aaacagactt tcttttagac
      541 tcaacaagca caaagtttct tacttttgct tttacgtttc tatttcagag ccgctcgcgc
      601 gctggggaga gacgcgcctg ggtgggaggg gcacagagca gctcctgagg cactgcagtg
      661 atgcatctgt acagggaact gctggaatgg tgacaccaat ctggca
//
LOCUS       KCLJ01003313             504 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 369046cal ultra-conserved element locus
            uce-3318, sequence.
ACCESSION   KCLJ01003313
VERSION     KCLJ01003313.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 504)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 504)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..504
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="369046cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>504
                     /note="ultra-conserved element locus uce-3318"
BASE COUNT          147 a          131 c          122 g          104 t
ORIGIN      
        1 ggattagccc cgctaacatg cgagcgccgg ccaaaggcga gaaaacccgc tactgtaacc
       61 aaaatgcacg cgctgacagg agaccaggac gggcccgcgg ctccccggga gaaaatgtag
      121 ctgtgatgag tgacagggct ttcaggaaat atgttcacaa tcacagacag tgaaggccat
      181 gacctagatc gtttaagagc ttgtcttgtc aaattatcaa aagcttcttc gtctctgaat
      241 aaagagtgac ataagtgagt gtcagaaagc tgcaggctga caagccaagc atacaataac
      301 agcatgcacg tcacatactt gccgaacacc gccacggcta gcggcaaatc ttaatgagag
      361 cgcggctggc ccaggagact tgggtccctg ctggcacagc tactcatctc gcaaaaatcc
      421 ttcagctccg agtcagttat ggtctgacac gacgactaca attactaaac acaacttttt
      481 aacagaatcc tctggtgctt tgtc
//
LOCUS       KCLJ01003314             379 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 369156cal ultra-conserved element locus
            uce-4021, sequence.
ACCESSION   KCLJ01003314
VERSION     KCLJ01003314.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 379)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 379)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..379
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="369156cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>379
                     /note="ultra-conserved element locus uce-4021"
BASE COUNT          138 a           66 c           70 g          105 t
ORIGIN      
        1 ttcagcatta ctgaaatagt ctaggctact caattctctg tatttcactg catgtgagca
       61 tgcttcattg caacctataa tgaaatgctc aaatttacag gcactgctaa gcgtgtcagt
      121 caggcagcac aatctttaaa aaataacctt acagaaagtc aaggtttaaa aggatttatc
      181 aaaatggaat tgcttaaaat gaaatttctg ttcaggcact taaaatatga agctacatta
      241 aaaggaggca agaaagggaa agaaggggct cattagaaat tcattccctg caatgccttt
      301 cactcctgca aggttgcctt ttttcaggaa gaaaaaagta aaaaaatcaa tactggttaa
      361 taaaacatca ggtgtgcag
//
LOCUS       KCLJ01003315             732 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 369263cal ultra-conserved element locus
            uce-2578, sequence.
ACCESSION   KCLJ01003315
VERSION     KCLJ01003315.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 732)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 732)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..732
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="369263cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>732
                     /note="ultra-conserved element locus uce-2578"
BASE COUNT          231 a          163 c          135 g          203 t
ORIGIN      
        1 acagtagctc tgaataatac catttcagtg acagaacaaa gaacattagg aatgtgaaca
       61 tgattacata ttagtttttc ctgctgattc ctgttaagct ttgaatctct ggccaaaaaa
      121 taggcagact tgcccacatt tacacaaaca agctaatgtg cattttgtaa accttccgaa
      181 acaaaacttc ctgcaagtaa catttataca aatgaagttt aagcaaaagc ctttctggat
      241 acactttgta aaaaaggcat tatggcatat aaagggttag cactcaaaac taattgggat
      301 ttttttttcc cccagcaaat ttggaaatga actgaagctg ctccctggtg tgaaagctga
      361 atccagcagc cacctgcagg atcagcgacc agtgctgcca gatgctacaa agcctttgat
      421 ttccagtagc gatttcagac acatttaact catgtgacat gaactaactg gaatagcata
      481 ttcaatcact ttacaaactc tggcttttct gctttctata tatgaaacag ctgcagcaga
      541 tagacacatt cagactcaca gcttgggccc tggttttcct aatgacttcc atgatggcat
      601 ccatgttgag gtagcttttg ctggtgggag ctgggccaac acagacagct tcatccgcca
      661 ttttcacgtg aacctgaaga ggcaatagtc tgcattaaca gatgctccca gcaaaaataa
      721 ttaacatcac cc
//
LOCUS       KCLJ01003316             468 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 369371cal ultra-conserved element locus
            uce-6508, sequence.
ACCESSION   KCLJ01003316
VERSION     KCLJ01003316.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 468)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 468)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..468
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="369371cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>468
                     /note="ultra-conserved element locus uce-6508"
BASE COUNT          171 a           70 c           80 g          147 t
ORIGIN      
        1 aacagagtta atcaagctca gtctgcaaaa tacagtgcag gtaaacgaca gaaaagctta
       61 aatatttgca atctctacca taagtgcaac cttcttctct gaaggtgtta tttgacattg
      121 ctgaaggttt catcttgatt actttcaata aaatccaaag taaggatgac tgtcttggct
      181 cagtaagcaa caaggtttta tcactaatta caatccttta ttaccagtag tttaataggt
      241 ttatgatagg tcataaaaca attcagcatg ggagtacata aaaggaatac gttatacagc
      301 tgtgacatct taatatctat tcattgtaat cattttatga tctttaatgg tagcattttt
      361 aaaataagtt tgtacatgaa atagatggcc accaaaaatg ggaggtgaag gaaaaccaca
      421 taaatataga gtaaaatact taatgaggca ttttgaaaac ttctaatg
//
LOCUS       KCLJ01003317             699 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 369477cal ultra-conserved element locus
            uce-3320, sequence.
ACCESSION   KCLJ01003317
VERSION     KCLJ01003317.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 699)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 699)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..699
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="369477cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>699
                     /note="ultra-conserved element locus uce-3320"
BASE COUNT          208 a          137 c          134 g          220 t
ORIGIN      
        1 gagcatttcc atgctgtcat cgtgttgcta tcaacagcat tatcagtatc aactgcttct
       61 acaattatgc acaatgcaca attatgttct tcctgcacaa agacttagca accaccaaac
      121 tcgttttcct tttaaataca ctgaaaagag tgtagatttc aatccttcat ctgctcacag
      181 atgaaataac atttccaaat catcactgat agcatttttt tcctcccatt ctaaggatgg
      241 ccaactgttc tcagcaattt ctattacatt tcctacctat tatttcatgt aatggcattc
      301 cttaaatttt aaattagctt tgaagaataa aaataattga attcctgctg ttttgtgtac
      361 atagagggtg acaggagcta atgtgataat ttaaactgta aatgagtctt cactttgtgt
      421 tcattaatta cagctaatta ctgaattaca aaccttcttg gttaggcact gttatgtatt
      481 catgtagcat gttggatttc cagctggtag aaaactgttt tatagactta caagctgaca
      541 caccaagcta gcaccgaaac aattccgtgg gagaaataaa gggagggcgg ggggcacgct
      601 cctgttcttg gaatccaggc agggaggaga aacagggctg caaacctgag cctcaggtga
      661 gccaggcatg tggataatta ggatttgctg tatttggga
//
LOCUS       KCLJ01003318             683 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 369585cal ultra-conserved element locus
            uce-421, sequence.
ACCESSION   KCLJ01003318
VERSION     KCLJ01003318.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 683)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 683)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..683
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="369585cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>683
                     /note="ultra-conserved element locus uce-421"
BASE COUNT          207 a          131 c          110 g          235 t
ORIGIN      
        1 ataaatacaa acgcacacag aaagttaacc agaatacatt ttcttatttt tcatggcagc
       61 acaagctctg tctgctaacc cctcagtcac taattcacat tcttttaaaa aaaaaatatg
      121 cttctgtgct ctagttttaa aatgcaaagg tatgatgtta tttgtcacca tgcccaaaaa
      181 agtccttact cggtaacttt gccagaagag ggagagagag agaggcaaat gctcccccag
      241 ctgtttcctg tctacagtgt ctgtgtaatg tagataaatg tgaggatttt ctctaaatcc
      301 ctcttctgtt tgctaaatct cactgtcact gctaaaatca gagcagatag agcctgcgca
      361 atggaataaa gtcctcaata ttgaaatgtg acattgctct caacatctca catctctctg
      421 gatttctttt ttctcatcat tactgctaac aaattcattt ccagactttg cactttcaag
      481 aagcaatgga aaaaatcaac agtctttcaa cacaattagt taagtgctgc ttgtgtgatt
      541 tcttgaaggt aaatctttat tactatttca aataattttt tagttttatt ttgctgtgta
      601 ttgtctgctg ctggcttgag gagtattgtg cacttttcaa taacattatt ttagaactga
      661 gaattattta taaattgctg aac
//
LOCUS       KCLJ01003319             420 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 369693cal ultra-conserved element locus
            uce-5173, sequence.
ACCESSION   KCLJ01003319
VERSION     KCLJ01003319.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 420)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 420)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..420
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="369693cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>420
                     /note="ultra-conserved element locus uce-5173"
BASE COUNT          145 a           77 c           69 g          129 t
ORIGIN      
        1 tttttaatac acgctttaca ttaaagaatt tcttggacag ttgtgctatt tctaatcagg
       61 ccccatggca aatattcacc aaccctcaca ggaataaact attctcactt caaacaattg
      121 ttacagtttg aatccaattg actctagaca aaagtactga gataatcagc atattaaagc
      181 caacactata accatatgtt aattatgtaa atgattcatt ttaatcagct agaaccatgt
      241 aaagagttac aaggaatgca aatgtaggga gttattaaaa atctcattat tattcatctt
      301 ggttccatgc gtgaacgtat ccatccaaac agatgaatta atagttagat gaaagatgaa
      361 agagctagag gggaagtctg tgggaaacca tctgtcttgc tttgtatccc tcccaggctt
//
LOCUS       KCLJ01003320             528 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 369801cal ultra-conserved element locus
            uce-5922, sequence.
ACCESSION   KCLJ01003320
VERSION     KCLJ01003320.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 528)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 528)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..528
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="369801cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>528
                     /note="ultra-conserved element locus uce-5922"
BASE COUNT          180 a           89 c           83 g          176 t
ORIGIN      
        1 cttggtgcat tggcacattt tatgtaaatt tagtgagaag acaactcctg tatatgatct
       61 aatatgcatc agtaataact cataatgtcg tcatgtgagg aaagaaatta aaaattcatt
      121 agaagactag aacactacat ggttaaaact actaaagcat atttcagtgt tttgcttaca
      181 ctagtgttct tatcatggtg cctccatttc atggcaaaga agagagagga gaaaacattc
      241 aacttaaaat gtctgctggc acacatcact ggatttgtat gtcaccttga ataccaacta
      301 tttaattagc acttttgcca gcaatgcata gaaaacagct catttacatg tgtcatgctt
      361 actgattatt cccaaaaaat ctacttcaca ttctagtgtc gtctcttatt acagaaattg
      421 aattaaaatt tataaagtct ttctttctct tgtgggtata ttttattaat ttaaccttaa
      481 gtgtggcata aaagactgga tacaactaat cattaagaac ttcaaagg
//
LOCUS       KCLJ01003321             560 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 369910cal ultra-conserved element locus
            uce-3736, sequence.
ACCESSION   KCLJ01003321
VERSION     KCLJ01003321.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 560)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 560)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..560
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="369910cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>560
                     /note="ultra-conserved element locus uce-3736"
BASE COUNT          164 a          138 c          122 g          136 t
ORIGIN      
        1 ggaaggtgtg cggccgcccc cgcgccctgc cccacccagc cggccggccc tccgcgcccc
       61 ggcacaaagc acactgcccc tattctttcg gcctttgtag ccatatggca aatccatgta
      121 gacacagcca acatccattt attcaggcac ataatgtccc gcaacaggga acaattggaa
      181 ctttgtttgc ttctattatt gatgcgaatg ggcgacagag agagagggag aaaaaatcat
      241 ttaactataa gagatatcca gctaattatg aaccatatgt gcctatagtt tcaaagcaat
      301 ccaatgaagt tcattttaaa tctagactac tttattagta cggaagacag atgtctcaac
      361 agtacatgca tcaggggaaa ccatgtaaag aagttcttga aatatttaac taggactcat
      421 tcattgtcag aggggcttta aagtgccctt tatcatgaga atgcataggc agaagcggag
      481 ggaggctgct ggttgttacc gccaacccac ccccttagcg ctaaatccca aattccactt
      541 tggatttgac gacaggaata
//
LOCUS       KCLJ01003322             739 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 370017cal ultra-conserved element locus
            uce-7559, sequence.
ACCESSION   KCLJ01003322
VERSION     KCLJ01003322.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 739)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 739)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..739
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="370017cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>739
                     /note="ultra-conserved element locus uce-7559"
BASE COUNT          202 a          174 c          162 g          201 t
ORIGIN      
        1 tataaaactc ccatttgcgt gatgcaagcg ggatagtctt tgaatacttc tgtctcgagg
       61 aattctttat tttgccatag aagaaaaatg ttttcatatt ctctcctgcc gtgcagacct
      121 gcagcccggc gagccctttt gcccttgaga gccataacat tatttgttaa catctttatg
      181 atgccaaatg gtctgtgcta gaacgggtgc cattctttag ctgggaaacc atatggcatg
      241 ccgagtaata aataaggtat tgtgatagtt aatgaaccta attgccagca aaggctttaa
      301 tacagggaat gtgctgctga gaatttagca ccacattaga gatgcagcag agctcctctg
      361 acttctgagg cttaatttaa gttctatatt gcaaactcca gaaaataatt ccaaaccctc
      421 ctgctggaaa agcaacctgc tggtagactg tgattatact gaattactaa aatcgcaatc
      481 aattttatac actctgttaa cccttgctgg ggaacttggc tctccaggag tggaggggat
      541 gccactccaa agaggtacca gagccaagtg agttggagca tcatggtcca cgactggtcc
      601 tctcccctgg catctccctc ttctgggaaa ttccccggcc catctgtctg ccagctaagc
      661 tgactgtggg caaagcggga ggaaaagcca caactgtgaa aggtcaccgc tattcctctg
      721 tgaccaacca aataactgc
//
LOCUS       KCLJ01003323             418 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 370125cal ultra-conserved element locus
            uce-6721, sequence.
ACCESSION   KCLJ01003323
VERSION     KCLJ01003323.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 418)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 418)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..418
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="370125cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>418
                     /note="ultra-conserved element locus uce-6721"
BASE COUNT          104 a          107 c           89 g          118 t
ORIGIN      
        1 gaaaaagtga cggaaaagca gggctggccc cacctcgcag ggtctggaat gtgtttgctc
       61 cagtgccggt gttgggtttg taacgtgaac cctccgcaaa tacctccggg gcagacaggt
      121 ccctttcggg ctgtgtttat ttaataaaga gccagtgaag taactgcaat ttcattgtca
      181 atttactaat gcgttacagt tatgtttctg aacctcattg tttgggctca ggagctcgca
      241 gtgcctggcc aaaactttca cccccttatt cctcccctca agtgtaaaac acgttttatt
      301 atgactagaa tgtcttctat ttatcaaaaa ctgggattaa aacccttgac tcccctccac
      361 gcacatatcc aacttggcag caggtcagtg attaacctcc tgaaagcctc acttgctc
//
LOCUS       KCLJ01003324             520 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 370229cal ultra-conserved element locus
            uce-1454, sequence.
ACCESSION   KCLJ01003324
VERSION     KCLJ01003324.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 520)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 520)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..520
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="370229cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>520
                     /note="ultra-conserved element locus uce-1454"
BASE COUNT          182 a           81 c           81 g          176 t
ORIGIN      
        1 taccatgagg atagaacaaa agaaattaaa acactagata tgccacagtt gtcttatgca
       61 gctgttagaa atttaattat tttatctcat agaataatgt gcccttcaga aatcattttg
      121 gactagatgt ttcaaaccaa tgatctgtag ttaattatct ttaataactg ttgcacatta
      181 tggttagatc tatgtttttg ctaaaccaat taataatatc ttcattagta taaagacaag
      241 gtagctggat cctttcattt ttcacattga aagagtagat attttaaaca gtgtaattta
      301 ctttagccat acattcccga tgatatgact aattaatgaa acttcaaaga catataactt
      361 ccaaaagcta cttatttaaa gtcattgttg agcacttaat gacattatgt tggggcattg
      421 caggaaccat cactgcctga gtgctgaatt tgctaaacct ttttatgcta ccaaactgaa
      481 ggaagcttga gtaatattga aaagcaaatt gagccaatat
//
LOCUS       KCLJ01003325             667 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 370442cal ultra-conserved element locus
            uce-6989, sequence.
ACCESSION   KCLJ01003325
VERSION     KCLJ01003325.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 667)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 667)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..667
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="370442cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>667
                     /note="ultra-conserved element locus uce-6989"
BASE COUNT          201 a          120 c          140 g          206 t
ORIGIN      
        1 tttagctaca gagtaaagtg agtggacaaa tcttttaatt aacctccatc atgatgcatc
       61 atgccctctt cattaaatag ctgtaacagg gagaaaagcc agttgtttct aataattttc
      121 gagtgctttt gtggtttgta tacttcagtg ttctgaaggt cggatagaac taccagacca
      181 taaaatccag ccagcgagag atctggagct aagagagctc aaggatttat taagtgatgt
      241 gaaactctat tgttttgtgc atgtgttaca taattgctgt cagtgcaggg ctgttaaaat
      301 tccctgctag taataacacg aataccattt tatagcttca agaggagata aaagaagttt
      361 cttagtcagc acttcaacaa tatcacagca catgtcagtt ttattattct ggggccttca
      421 gttttggcag atgctctcca ttctggccgt ggtgtggtaa ttaccatata aattaagcag
      481 tgaaagagtg cagccttatc cctgctgcct gtaaccaggt tgcaagtatc acagtgtgaa
      541 acaggcataa ttcaggctga ttaaatttag aaggccacat tttgaaatcc tggacgttta
      601 tcccaattcg agtcaatttt aaaagtaaat tgaagccatt tagttgctgt gcaaacagag
      661 ggatcat
//
LOCUS       KCLJ01003326             664 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 370556cal ultra-conserved element locus
            uce-248, sequence.
ACCESSION   KCLJ01003326
VERSION     KCLJ01003326.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 664)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 664)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..664
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="370556cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>664
                     /note="ultra-conserved element locus uce-248"
BASE COUNT          219 a          111 c          104 g          230 t
ORIGIN      
        1 gttttccaaa ccaattgtaa ataagcttct gtatattgaa acgtgtgcag accaggggac
       61 tttcctcttt ggatttctaa attggttttt agagcaatct gtctgttgcc attttatcta
      121 tttaaacaaa cacaataaca gaaaaatgca actatggact gcaatgttat gaaacatgaa
      181 ctgttagagt taacacaact gttaaatctt actaatgatt ctatcaccag taaaatacat
      241 tagcaccaat aattttatta aagtaggtca ttcatctaga ataaaaaggt agaagaatgt
      301 gaattaaatg ccaagcgtgc taactcccct gtacttgtta acattgaatg tgatgccctg
      361 taggccttcc tcagtatcgt taggaataga ttacctgtca ggaatatgta tggcatattc
      421 aaataagcac tgcgcatatt ttaaaaactg atatgatatg aatccatgta gaccaatttt
      481 aatagttcaa aatgagtcat aattcttgtt aacaatacag ttatttttaa aatttgcagc
      541 aatagtggtc cttttttatt ttccttattg aaattaaatg atatgcctta ggtgagtcat
      601 tcatcactgt taaaggaact cgccttcttc cctaccatag tttatttttc tacatgtaag
      661 ttgc
//
LOCUS       KCLJ01003327             657 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 370664cal ultra-conserved element locus
            uce-615, sequence.
ACCESSION   KCLJ01003327
VERSION     KCLJ01003327.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 657)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 657)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..657
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="370664cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>657
                     /note="ultra-conserved element locus uce-615"
BASE COUNT          229 a          112 c          114 g          202 t
ORIGIN      
        1 tatgtttcac tatttcaagg aaaaaagaaa aatcaacagc acacatacca agggggtcag
       61 acttagaatc tccacatctt cacaaatgtg atgagatcaa gtaatttttc ttttaaaaat
      121 aacacaagtg aaattcaagt ataatgaaag cacatcaaga aacaaactgt acaatttctg
      181 aactgcactg tttattttgc tgcttgaaac ctaagtgaca gtatgccact ataattatgg
      241 ggtttcttct aaacctttac tacactgcag gtacagaaat atatggacac atttttggag
      301 aattgacatt ttgcaaaatg cagcaaacat ttcaatttat acatgagaaa aggaagtgtt
      361 caaaagggta tgcatttcaa gttattgcag gttatttctg tgagagaatt tctgcaggta
      421 aaacatgttt aaatttaacc aacagtaacg tgtcagtgta cttaaaatca tgactctctc
      481 tggtcattaa ttgccccttg acaaattact aggatgttgt atgtttaggg caagatgtca
      541 atacagcata aatcccgtgg cattttggtt ttcttctgga gattaaagct gtttttttct
      601 tgggataaat gcagcagcaa aacacaaacc agctgatcaa aaaagcactt ctgccat
//
LOCUS       KCLJ01003328             704 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 370775cal ultra-conserved element locus
            uce-6314, sequence.
ACCESSION   KCLJ01003328
VERSION     KCLJ01003328.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 704)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 704)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..704
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="370775cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>704
                     /note="ultra-conserved element locus uce-6314"
BASE COUNT          216 a          141 c          151 g          196 t
ORIGIN      
        1 aagccttcat cacctgcaga aatccctggc ccagactaca gatgctggtg cagttgcttc
       61 agttttgttt cagtgccaga gtgtaaattc aaaggaagat gggatgtact ggcagcaatg
      121 taacccacca aggatctcca ctgagcacag aatctctccc aacctgctct aaatctgttt
      181 gctttcataa ctaaaagtta agagttactg cagcaccttc gggttattaa atggaacatg
      241 cagaacatta cattattatg ctgcacatgg ctaaggaatt ttagtattca caggattatg
      301 gtaattaagt cttccttcac tttgggtgat gtgacacttg cttgactata atgtcactcc
      361 acttaaagtc tgtgtaaaca acattatctt agtcactctg cattacattt ccaactgtga
      421 gcaaaattac aaggtcaaag tggacaagaa tgtaggtaat cccaaggaaa catcatgtaa
      481 atgactcgct caaggttcaa gctgggtttt caagggtggt aaaaggctta tgtactacac
      541 tggtatttta gtcctgcttt gcacaaggta tcagtgccaa actgcagtgt gtagggacat
      601 ttagctgctc aggactctgc gtaaggactg ggctgccaaa gaaatgcaga gagcaaaaga
      661 ggactgattt tgaacaaaaa gctatatgga accagcagaa tatt
//
LOCUS       KCLJ01003329             766 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 370881cal ultra-conserved element locus
            uce-7748, sequence.
ACCESSION   KCLJ01003329
VERSION     KCLJ01003329.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 766)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 766)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..766
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="370881cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>766
                     /note="ultra-conserved element locus uce-7748"
BASE COUNT          228 a          151 c          158 g          229 t
ORIGIN      
        1 aaataatcct gcccagaaga tggtatcata ttcatgcaca gcagggtgtg caaatgccta
       61 taaatcataa cgtagaatct gaaatatcta taaaaaaaat ctgtgcaaat ttaaccatga
      121 ccctttgcca gacaataggc cttcatatgc tttgcagctt agcagacacc aaggaatttt
      181 gtttggaagt gatagctact gtctatgtaa tatttaggac tattcatgga gcatctggca
      241 gaaaataaaa gggtttcctc ctctaacata tgctaaagaa ggatgtggtc ctgtgcctgc
      301 tcctcctctt ctgacttttt gcaaatagca caacataaga gacagttgtt tctggctgcc
      361 ctgctgcctg tcatggctgt caagtgaaat cccatgaatt attgctcttc cagatgtaag
      421 agatttccag gctgccttaa actgcctgtg gtttgtggta ctggagagga gagaaacgag
      481 attaaacttc atctcatcag tgcaatctga aaagatcaca cagaggacta ataatcacag
      541 ctttttcatt ccagagccgg acccgagagc tctgtgtttt tgtttcaggg ctatgtcaca
      601 ttaagcttgt tggaagacat tgattaaggt caaacaatgt ttgaagatca aaatttttaa
      661 ctctgtgttg ctgcatacat tttgcattct tcagaaagtg tcatgcatta ctttagccag
      721 ctgaaacaga agagactgtg aacggagctc tctaattctg agatgt
//
LOCUS       KCLJ01003330             555 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 370992cal ultra-conserved element locus
            uce-4640, sequence.
ACCESSION   KCLJ01003330
VERSION     KCLJ01003330.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 555)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 555)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..555
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="370992cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>555
                     /note="ultra-conserved element locus uce-4640"
BASE COUNT          171 a           94 c          128 g          162 t
ORIGIN      
        1 aaaggatttc ctgcaagcct tagaagaagt gtgctcagtg gagatgaatg ttttgaaaag
       61 cttggctgat ttcttggcat tcaggccaga agcccctgcc cttgcacagg caagggcaga
      121 atttgggagc ctctggagtt aggcaaaagg tacagagaac atcctgatga ggtagtaatt
      181 taattgtcta actccttctg tgctcgagaa tatcagacag atggggagga taaaacaagg
      241 agctcaataa ttaattttca tgttcctcac tagtgggacc tctttaatcc ctgttcctgt
      301 gattatagag aaaggttgga atctgaagtt tcactcatta gctacgtgtt gtatgaaaat
      361 acctgtattt tcaaaaggaa tagtgacaaa aaaatttctg ctattagaaa tatcttggtg
      421 tcagggactt ttgtgaaaga actctgattc cctcagataa ataatgaaac agatggttgt
      481 tggggggtta aaggtcaaac cttccctgtt gactaaaaca caaggttgac ttaaaagatt
      541 tcccgaagtt attca
//
LOCUS       KCLJ01003331             748 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 371101cal ultra-conserved element locus
            uce-7913, sequence.
ACCESSION   KCLJ01003331
VERSION     KCLJ01003331.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 748)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 748)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..748
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="371101cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>748
                     /note="ultra-conserved element locus uce-7913"
BASE COUNT          210 a          171 c          157 g          210 t
ORIGIN      
        1 agcagtgaag aggtgaaagg ctgcacatta aacagtttgt ccgaaagcca tgtgcatagc
       61 aaacttttac accagcttct atacaactat ttgttttaac tctgcagctg gaatgtttcc
      121 agcataaggc ttttagagtg actccagcaa taacagaagc ctttggattt ttcttgcttt
      181 gtttaaatcc actagccata ctcaaaaata gtatttcttc atgttttatt tttatacggt
      241 ggctagcagg caccttagta accagccaga gatagatttc aaccaccatc aatccctaaa
      301 ctacagtacc aggacggttg gctaaaggaa ggaaactgat tggctgtagt ctgaaacttg
      361 cctagtacaa ggtgtctggc tgactttgtc ctaaataagg ctaacattag tgaactaaga
      421 gaacagcatt tggttgcagt cttgcactca ggaacatcct tcgccaatac gttggcaaga
      481 tctccctact ttccgatcca gtttcaccat tttcatgatg gcctcctcgc gcccgcggcc
      541 catgtggtcg aacgtgcagt cgtgctgttc gggcaggcgg tgcaacatgc agaacacgta
      601 acctgccaga gggagacagt tagggactgc ttacacaggt ggcatctcac ctgaaccaca
      661 agtgagtaac ctctactggg gattactcag ttctcaaaaa ttcacaaata ttttacttat
      721 tttcttgcag ggaacaaata tttgatca
//
LOCUS       KCLJ01003332             517 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 371211cal ultra-conserved element locus
            uce-4827, sequence.
ACCESSION   KCLJ01003332
VERSION     KCLJ01003332.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 517)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 517)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..517
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="371211cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>517
                     /note="ultra-conserved element locus uce-4827"
BASE COUNT          179 a           86 c          103 g          149 t
ORIGIN      
        1 aaaaatggcg tctctgttta aataagggtc caatgcagaa tgagaatgaa tgttgtcata
       61 tgaagtgcat ttcaaatgta ataaagcaga aaggagttcc tggcccctgt gtcagttgta
      121 agagggtgca tactgtgatc actatagctc agtggctgca aagcagaaaa tgaagattgt
      181 aaaaacgtca cataaagaaa aaatgcacag tggattcgtt ttgcgatgct cataattcag
      241 taatgccttt aagtagctag aagaaatata ataaatgttt ttccacaaca ttgatcatac
      301 tgtatcagag gaaatattag tgtgcaggga gccatgatta tgctggtagt atgcagaaaa
      361 ctcctagaag atgggaccct ttataggctg aacttttatt ggctgctgtt atttaccttt
      421 aagaatacgc ctaatacact gtcctatagc taaatatttt tgtgaaaact caaaccagcc
      481 actgtcaata aatcaaaaaa cctgctacca ctttata
//
LOCUS       KCLJ01003333             878 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 371322cal ultra-conserved element locus
            uce-1094, sequence.
ACCESSION   KCLJ01003333
VERSION     KCLJ01003333.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 878)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 878)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..878
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="371322cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>878
                     /note="ultra-conserved element locus uce-1094"
BASE COUNT          268 a          144 c          162 g          304 t
ORIGIN      
        1 tattttaatg atatttacac ttcacagaac caaagcaaga aaaattttgc atcaccttgt
       61 gtgcctcata tattgtggac cagttaaaca tcaaaaacaa tggttgcaaa ctaggttgcg
      121 aacaaatttt gcctaaggca tcaaccataa attaaagtaa taatcgtccc cgtaagagac
      181 aactttttcc actgctcttt aaaaaagaaa gtaggtcaga gaaatttagg atattttaga
      241 gtatgtacag tattgtattg tttgccagca cctaatttac aattacagag ctgcatgaat
      301 attgaaatga ttcagcttcc cattataaat gtatgtggca gtttggttgt tgatcagttt
      361 atgaagttaa tgcaaatgaa actgtcttcc tgtcagcatt tgaaatatat aatgcagtca
      421 tgttgtatat tcagggacag gccattgaca gtcaattaac aagtttgatt ggtatgtcaa
      481 ctcattcttt tgaattgtta atagtatgtt aatagcattc atttctttgt gcagtcccat
      541 ttgcagcttc acagttacag ctatttttta tgattctgag taacctaaaa tagtgcctta
      601 ataatagatt attaaacacc tgtctggtgt agcttaggga ggtttttcta gactgggagt
      661 ttgcagtgga tccctttgat attcaaatca acaaatgata gcctttttat tcaaaacgta
      721 agttcttttg atggttagct tgttaagaaa tattcagctc cagtctgacc tgatctggtt
      781 tcccatggaa aagatctgat gctgtttgaa ggttcataaa tggaatgcca atgacaattt
      841 gttgttgacg ttttgctgcc tcagccttca gatgctgc
//
LOCUS       KCLJ01003334             668 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 371432cal ultra-conserved element locus
            uce-6383, sequence.
ACCESSION   KCLJ01003334
VERSION     KCLJ01003334.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 668)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 668)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..668
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="371432cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>668
                     /note="ultra-conserved element locus uce-6383"
BASE COUNT          162 a          143 c          161 g          202 t
ORIGIN      
        1 ttctcttagt ttgcagctat gtgaaagaat ttccaaatat ctccagagct attttaaata
       61 gctatttgat ttggagggat gcctgtgcca tcctttgtgg ttgcccttgt tacaccccag
      121 gagagagctc acaaccactc tgaccccttg cccatcctct cccagtggta ttttccttcc
      181 agtctgccaa tgagagataa tgtaggtagt taaggttgtg gatgtagccg ggaattgtct
      241 gtctattgtt gaacttagag aaattaaaag aagacctttc gacctttgat caggtcttga
      301 caagttcctg ctttttgctc gaaggatgga catccgtcgg atcagctttg acacagatga
      361 cctgtcagat gatgtcatcc cccttgctga tgtccgcagt gctgtggctc tagactggga
      421 ctcaaaggat gactatgtct actggacaga tgttagcact gactcaatca gccgagcaaa
      481 atgggatgga tcgaaccagg aggtacagtg ttcactgtca tctggccagg agtccttgag
      541 catcagattt gtgggataca ctggcagttc atggtggatc ttttgttcat tagacaaact
      601 aatgagatct gcacacaacc aattgggtag agccttgaat ggggctttgt tcaattcctt
      661 tgttgtag
//
LOCUS       KCLJ01003335             755 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 371537cal ultra-conserved element locus
            uce-4426, sequence.
ACCESSION   KCLJ01003335
VERSION     KCLJ01003335.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 755)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 755)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..755
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="371537cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>755
                     /note="ultra-conserved element locus uce-4426"
BASE COUNT          251 a          131 c          172 g          201 t
ORIGIN      
        1 cagaagcgtt gccacattca cagcttttca agtattttta aatcacttac aaaagcagga
       61 ttaaatgatc aggaattcca tttaatagga caaataaaga aataacaatc tactccatca
      121 gccctgtgaa aggcaggttt gatttaagaa gaaaataaat taagtataaa agagggagac
      181 aaaaaaggaa agggaggtgg ggataatgtg tgtttactca agcaaagaaa aaaatattta
      241 agtgatgtag gggagaagat tgcggtaact agtgaagaat aacatcgtct gctttgctgt
      301 caaatcacac aagaatttca gtaatagatt ctcattctga cactcaattc aattcgaagg
      361 tgatcctgct ttatcccaac acatcaaata ttaaacactc gtattagcca gggtgccgtc
      421 gcctttcccg gcttagacgc ggcaggaagc ccccctactt tctctcactc gctataatat
      481 tctcaatgtt atctaaacat gccttcatac actggggttc cttatcaatc ccatttgggg
      541 agggagtgta cttaaaacgg tattagtttg gggggctttt attattatta tttccaaagc
      601 ttttcaattt tgtgtggaaa aagcttagaa aaaagaggtg gagggagggg aggcggtgag
      661 agagggagcg cgggagcgag agaaagtata aaaaagggaa aagcagccag cagctcttgt
      721 ttgactgatg cctttcaaca agggcagtct agctt
//
LOCUS       KCLJ01003336             571 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 371646cal ultra-conserved element locus
            uce-1271, sequence.
ACCESSION   KCLJ01003336
VERSION     KCLJ01003336.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 571)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 571)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..571
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="371646cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>571
                     /note="ultra-conserved element locus uce-1271"
BASE COUNT          163 a          131 c          131 g          146 t
ORIGIN      
        1 ctggagcgac ttttattgct attgtttgtc tacaaatctc cccgtgccaa agttgtccga
       61 ggcttcgcta ttaatgactc atgagtacaa taatgctgcc agaacgtact taaaaaactg
      121 ttgctatttg tttccccagc actttgcaca aatgtctgtg gagtacccgg gctccccctt
      181 cactctcagc gctgaccttt gtgctctgga aacaattact cctggaaagc ctgtcaatat
      241 cattattttt acaagaaatc aatacgcttc acaaagttaa tgggggattc aggcagcaag
      301 cgtttacctt cttactgtca gtggtgcagc gggctgtgct ctggcacaga tgacagattc
      361 gcccagacac cgagcagaca gtaagcaatg gatgtaaagg aaaaataggc tgcaagcagg
      421 cgtggaaaac gtcagcttct gcaggcatct atgctctaac gagccaaaga tgtcagcctc
      481 ttgtagtgtc cactctggag caagcaaaga atacagggag ctaatgaaag ggggattagg
      541 gaacggtttc cacttcacaa atagaaataa a
//
LOCUS       KCLJ01003337             522 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 371758cal ultra-conserved element locus
            uce-7694, sequence.
ACCESSION   KCLJ01003337
VERSION     KCLJ01003337.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 522)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 522)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..522
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="371758cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>522
                     /note="ultra-conserved element locus uce-7694"
BASE COUNT          163 a          109 c          117 g          133 t
ORIGIN      
        1 cgaggggatg ctttttatta gcaagtctcg agggaattaa tttcatcagt gcagcagggc
       61 atgagcaaac caccaatgaa cttgaaagtg cattataccc attaaaaggc atgaattttc
      121 taaattgcta atggggatac attttacact cagagcacta acctgaacag ctcttgtatg
      181 gctggttcca cgggaactgc agagagatgg aaaacatata aaaatttatc atctattaca
      241 agtacccctc ttctacagaa aattaccaga aaggttgtgt aaaagcaagg gtcagaatga
      301 atcgtgcaaa gagattctgg aggatgaagg tcaccctgag caggggcctt gagtgattta
      361 ctgaagcaag agacatacct cgaacacctt tggagcgtgt gcgatggcgc ttctcgtctg
      421 catccacctc catctgggaa tagattagca ggcagtcaat gttcttatcc tgcatgcaca
      481 gactatcaat gcacagactg atacagtctc tcacacgatt ta
//
LOCUS       KCLJ01003338             702 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 371868cal ultra-conserved element locus
            uce-2605, sequence.
ACCESSION   KCLJ01003338
VERSION     KCLJ01003338.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 702)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 702)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..702
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="371868cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>702
                     /note="ultra-conserved element locus uce-2605"
BASE COUNT          202 a          139 c          133 g          228 t
ORIGIN      
        1 accaatgcac acttgtatgt ataccaatct ccagccacta ttttgtattt actattatgc
       61 aaaatctcta ctttgctccc tcagcagtat ttatgctctt taaaacccta actctcttct
      121 gaaactgttt catgtttgtt ttcaaagact tcttgtaaga tattggtggg ttgtgtgaca
      181 gtaaaaataa gaaactacct ttccatttgg gttagaactg agatgaaatg aggaatggct
      241 gccaccaagc agaaaatttt ctcactttat gtgtgccagt taattacgac acttcagagg
      301 cgcttctgaa aggataaggc aagctgcata aatttagctg taatccaggc aggcaaaact
      361 aatttgcagg ggatggcctt atctagctgc tgcagctttc tcagaaaatt aaccttggat
      421 atttgggccc aattcagaaa gtgtttgacc ctttcctgct ctgcataaga gaattttaaa
      481 ttcaatacaa tacctgactt ttaagaggca ctgtgaatgc tgtaggcagt tcagagttat
      541 tactgacaag ctatatttat acatgtacat atatatgatt gtccttcagg cccattatcc
      601 tgccttcttg cctgtgcatc agagggttta tcaccatacg tatgggtggg gtctttggac
      661 taacagaaga tgcagctcat tttaatgcac ttagaaaaat tc
//
LOCUS       KCLJ01003339             585 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 371978cal ultra-conserved element locus
            uce-7554, sequence.
ACCESSION   KCLJ01003339
VERSION     KCLJ01003339.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 585)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 585)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..585
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="371978cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>585
                     /note="ultra-conserved element locus uce-7554"
BASE COUNT          163 a          118 c          121 g          183 t
ORIGIN      
        1 ccttccacat tgagatcttt cttgatagct atgtatttgt tgttcccagg aagtagactt
       61 tagttttatc tcttggacaa cagcagccct ttcccatctt tagtagtgaa aagaattctg
      121 gagtgtatct aatgtgatgg tcatcatctg agcacagatc tatttcatct cacttgaatt
      181 ctgtgtgatt tcaaaatgca acagggcctc agcatacact gaaaattaat taaaatgaaa
      241 tatgctgtgc tgtccttttt cagcaagtgg gatcccagcg tttcagtgtc aacatgcctc
      301 acaagttcag cattcacaat tacaaagtgc ccaccttctg tgaccactgt ggttcattgc
      361 tctggggtct tttgagacaa ggtttacaat gcaaaggtaa ggcacttcag agcagtgact
      421 tggagactta tgtacagaaa taaatcatca tggtttggtc tgtaccctgt tggcagcacc
      481 agtcaggaac agatgcagag gtcagagcac tcacttcttt attgccataa ggatattaga
      541 agttaacaga tgagcaggac aatttacata tcgtgttttc aggtt
//
LOCUS       KCLJ01003340             434 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 372083cal ultra-conserved element locus
            uce-6855, sequence.
ACCESSION   KCLJ01003340
VERSION     KCLJ01003340.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 434)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 434)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..434
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="372083cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>434
                     /note="ultra-conserved element locus uce-6855"
BASE COUNT          151 a           64 c           87 g          132 t
ORIGIN      
        1 ttctatttca gggctttatc tagtaaagat aaagaaaagt ttcaggttca aaaaaaaaat
       61 gtataggcat ttgcatggca cagcttttat ataagtgtgg tattatataa cagatggaag
      121 tttaatggag taaaacatag tttgtaacag gttcattgtt tcatatgctc tggatcacta
      181 aattggcagg tagagatgaa aggtgcatta aaatggacgt cctgaaaatt atagaattct
      241 ctcaaaggaa tagtctttaa ttttgaatta tacagctaat tttaatgaat tggaagccat
      301 aatgcataac ctttctttca tgcaggaagg aactgtgagc tgtgcaagga tttccattac
      361 agacaagcag gtgcagatct ttcagccact gatgtttgca aaccctgtga ctgtaacaca
      421 acaggcacca aaaa
//
LOCUS       KCLJ01003341             434 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 372192cal ultra-conserved element locus
            uce-6619, sequence.
ACCESSION   KCLJ01003341
VERSION     KCLJ01003341.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 434)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 434)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..434
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="372192cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>434
                     /note="ultra-conserved element locus uce-6619"
BASE COUNT          154 a           75 c           76 g          129 t
ORIGIN      
        1 ggcacaacac catgagctgc ctctgtctag aatatgtttc ctgcatttag gaaagtgcag
       61 taattcatca gtgatttaac ctatagacat ttgaaggttg gagagcacct cagaggggct
      121 gttgaccttc agcaactgaa agaattgaag ctccagcctt agtcaatata tatttatctt
      181 tctgttggga ctattacaac tgttcaagta atgctgacct tgaaacttct gcacacgatg
      241 caccagaata atgatccctg aaggaagagt ataaaaatac ctaaatagga tatctaaatc
      301 caaaatgcac ataaagataa aaggaagcat ttcaaaatgt gaagtcgctt aagatgtggt
      361 aatattatta aggctcctat taattataat ttgaataaca ttgttaaata ccataattac
      421 acatttctaa atat
//
LOCUS       KCLJ01003342             547 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 372296cal ultra-conserved element locus
            uce-2383, sequence.
ACCESSION   KCLJ01003342
VERSION     KCLJ01003342.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 547)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 547)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..547
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="372296cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>547
                     /note="ultra-conserved element locus uce-2383"
BASE COUNT          162 a          109 c          101 g          175 t
ORIGIN      
        1 ctcagcttca gactgaccaa attctgacca aataattttc ttacagaaat atctgctgct
       61 ttcattaatt ttgggttcac tctctgcttt ccagcagtca tcctccaaaa ggtgggttac
      121 ttaagaaaca attaggtgcg tatacaaaac aatttgcagg cagtcttact ccttcagctt
      181 cctaagtgaa gtgcctttca aggctgattt ataacactgt cgtcttcaga aggcaaaata
      241 attaatagga gcacggactt ctaatttcag tgacttccag agaaagtgga tttcatttga
      301 tttatgatgg ccggtgactt tgcattttat cagttcattc actcattatt tatgctgatg
      361 accaatttca atgggtcgct atcatctaac tcgctactaa tcaaagagaa ttagggttca
      421 ctgcattatt tagaagccac taatttatct tcagaacaag tatcaggaat agtttggggc
      481 cttctacact aagaagaggc acagctggca aagtcacagc atttgtgtgg tattacaaat
      541 gaatgtc
//
LOCUS       KCLJ01003343             676 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 372403cal ultra-conserved element locus
            uce-5120, sequence.
ACCESSION   KCLJ01003343
VERSION     KCLJ01003343.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 676)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 676)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..676
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="372403cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>676
                     /note="ultra-conserved element locus uce-5120"
BASE COUNT          189 a          148 c          146 g          193 t
ORIGIN      
        1 ctgggatttc actaccttac ttttcgtttg gcttcacgct gaaaaaaggg attccttata
       61 tttgctctcc acgcttttgg ttataattca ctgttggtct agggagaaca accgttcagc
      121 ctggctgaaa aaaaagcatc cgttgaaaag tctcaaagaa atataccacg tgaggaaaaa
      181 aaactgggag aagatcggaa tataatcgct ttttctatga taaaactggt gcccctcttc
      241 aggagaactg atctcaattt attattatgc aaccacaagg atctcttctt tctcagggtg
      301 tataagctgc tggattgctt ttcgcccaaa tcaatgtggt ttctttggaa cattttcagc
      361 aaaggatcgc atatgctgca gtgtctttgt ggcaagagtc ttaagaaaaa caagaaccca
      421 actggtaagc aatccattgc aatgcgttgt ttttctttaa tgctaccctg tctgttgctc
      481 gccgaggtag atctgcaatc ctgctgaggg gagtcgaggc cagcacggac acatacgtgt
      541 atgaataagc aaagagcggt ttgtattagc ttcagcccac cgaaaagggg taaaatcaaa
      601 ggcgaccctc gcccagccgg catctcctag ttcctatgtg ctatttccaa ggaggaaact
      661 tttacatcag taccct
//
LOCUS       KCLJ01003344             542 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 372517cal ultra-conserved element locus
            uce-7997, sequence.
ACCESSION   KCLJ01003344
VERSION     KCLJ01003344.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 542)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 542)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..542
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="372517cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>542
                     /note="ultra-conserved element locus uce-7997"
BASE COUNT          151 a          134 c          117 g          140 t
ORIGIN      
        1 gaccaggccg agagtctaca attctccaac aaacagctcc tccacccagg attctatgga
       61 ggtgggccac agtcaccact ccatgacatc cctgtcttcc tcaactactt cttcctctac
      121 atcttcctcc tctactggta accaaggcaa tcaggcctat cagaaccgcc cagtggctgc
      181 taataccttg gactttggac agaacggagc tatggacatg aatttaacag tctactctaa
      241 tccgcgccaa gaaactggca tagctggaca tcccacgtac cagttttctg ctaatacagg
      301 tcctgctcat tacatgactg aaggacacct tgccatgagg caaggcattg atagagaaga
      361 gtctcccatg acaggagttt gtgttcagca aagtcctgtg gctagctcgt gactaaactg
      421 tttgtttctt gtgtgttttt atagaagtgg tgaaagtgca aagctgcttg aatcagaagg
      481 agataaaacc gctacaggag ggcaaagttg actatttttt taaacttgaa aagattgcaa
      541 ag
//
LOCUS       KCLJ01003345             633 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 372623cal ultra-conserved element locus
            uce-1102, sequence.
ACCESSION   KCLJ01003345
VERSION     KCLJ01003345.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 633)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 633)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..633
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="372623cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>633
                     /note="ultra-conserved element locus uce-1102"
BASE COUNT          205 a          141 c          115 g          172 t
ORIGIN      
        1 aatgaaagct ctctattaac agtgaaggaa gaatttaact caaagctttt ctgtaggact
       61 tctcaacttc ccgctctact tatagcagac tgttgtgata cattgtgact tcacacagtg
      121 ggtattaagt gagttaattc aaaggagctg aaacctcatt gatcctaatt gaaagcaata
      181 cacccaacca aatagttttc taccccatct gctctggcct gccaccagct attcaataca
      241 agagaattaa tagtttcaga tattctaaca gacccaataa aagcactcat ttaagcagga
      301 ctgcattaac aaagtgaaaa accaagggca aaatgggttc aaatggagca ttttactcct
      361 agttggcttt aacaaagctg aataatgctt attctgactt tttatgtgca agacttgata
      421 aactgaatga gaaggcactc aatgatcagt caacgagcat tgatgaatgg tcattaggac
      481 ccccccaatc tcagggaagg ccattccaca aagtggcaca ccagcttgaa agggcggact
      541 cactaatgtc cagatttccc cgcttgcttg ttccactttc actttcagac cactggccac
      601 caaatgaggc tgacatattg gaaaataatc ttt
//
LOCUS       KCLJ01003346             476 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 372733cal ultra-conserved element locus
            uce-5557, sequence.
ACCESSION   KCLJ01003346
VERSION     KCLJ01003346.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 476)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 476)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..476
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="372733cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>476
                     /note="ultra-conserved element locus uce-5557"
BASE COUNT          117 a          118 c          112 g          129 t
ORIGIN      
        1 gagtgcttac aagtattaat tgaccaagtt gcttggtgtc ccctaattac ctgtttagct
       61 tctttctttc atggttcaaa ttggcacaag aaccagagtc aggagagcgc ggccacgaga
      121 ggattttaat ttattgacgg ctcttgccct actgtacagt cagcgctgct atttgagcgt
      181 aatggatgga acagatgttt gacactgcag cacctcttca taacttcact cttcaaaaac
      241 agttttacaa gtgctcgctc gcgttggttc ccattcagca caggaaactg aggtcatgct
      301 gaaacatgag gcccgggcag gagcttgaac tcatgtgcac tgcagctggg cccgcgccct
      361 ccgagcggcg atcgcggagc cgccgtcgct caaggaacca aactgttgac actgtaacat
      421 ctgcacgaaa atgcaaaccc aattttgttc atggtctttt taataatttc ttcggg
//
LOCUS       KCLJ01003347             392 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 372844cal ultra-conserved element locus
            uce-4452, sequence.
ACCESSION   KCLJ01003347
VERSION     KCLJ01003347.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 392)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 392)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..392
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="372844cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>392
                     /note="ultra-conserved element locus uce-4452"
BASE COUNT          113 a           74 c           81 g          124 t
ORIGIN      
        1 aagttattac ctgataaatc ctgggatttc ccagatactc tagcacgttt tgctcggtga
       61 ccaaagtttt cagtagctga agtagaggca cccaattagt gcagccatta aaaatactaa
      121 catattcttg aaacataaca tttcctttac aatttacctc catactgctc tttgtaggac
      181 aagctgttct tttaggtaga agagtttttc tgcgaagttg gtacgggctg ttttgtgcac
      241 caggacctga ttcttctgca accatatctg caggtacatc atcatctgtt gataattgga
      301 attgtagttt tgctttatac caggaaaatg ctacagaaat ttacataatc agaagggtgg
      361 ggaggaagtg ctagagagca gagtactcct at
//
LOCUS       KCLJ01003348             526 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 372949cal ultra-conserved element locus
            uce-2577, sequence.
ACCESSION   KCLJ01003348
VERSION     KCLJ01003348.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 526)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 526)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..526
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="372949cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>526
                     /note="ultra-conserved element locus uce-2577"
BASE COUNT          149 a          113 c          108 g          156 t
ORIGIN      
        1 tatttctcct cagcaagagt aaaacttgag cgtggccagg tgttttcact tcagaggctc
       61 caatggcaac aacaactcca gtgcttggaa gctaacaaat ttgttgtgtc acaattgata
      121 atcaactcta gtaaaagaat gtccaaatca attgagcttt agcaagggca aactgactgg
      181 acacagccag actcccagca aaagtaggcc aagcttgata aatttgccct tattatagct
      241 attgatgttt aaatttcttc agggatgttg ttacatgggt gcctagtggt gacagaggta
      301 cgatgacctc cttcgatcct taatctacac ctgttagttg gctccctagt tgcttgtgag
      361 tatactcaag cttaaaggtt aacaaaagaa aaacaggcca agtttacgcg actgcagcaa
      421 cggatcaatg cagagtaaat aaccttctct gtcttatttc cccaagcatt attgatccga
      481 gttctttgtt ctttgtcatg tttctgtctt ctaatcccgg gggacg
//
LOCUS       KCLJ01003349             676 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 373059cal ultra-conserved element locus
            uce-4195, sequence.
ACCESSION   KCLJ01003349
VERSION     KCLJ01003349.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 676)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 676)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..676
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="373059cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>676
                     /note="ultra-conserved element locus uce-4195"
BASE COUNT          177 a          136 c          126 g          237 t
ORIGIN      
        1 ctttccttta ttgatagcaa agcttgcttg tgagacccaa agggttaatc attttctgct
       61 ttggaccagt aggcgatttc catcactttc agcatttgac tatggaacat gtatagagtt
      121 gttatacctc tctgtaattc attctgctgc caatttcatt cccttttctc tgcctgcatt
      181 ttaattgaaa caacatttgt atttttgagc caggatctgt cagaagtccc tgtggctagt
      241 ctgtggtaca agtagcagca gacgtggctt acccatatgg tgtggtgctt cttgtaaaat
      301 ccatatggcc ttgttgaagg gaatcccagc ggggatgtga agggtgttaa tacccttcag
      361 gccaggcctt tccctcctgg ggcttctatg gcattgtctt tgcaatctgc caaagcacaa
      421 acctaattcc tttttaataa tcaattattt cagtccagga acgttttttt ctaatcatat
      481 attccttgaa cttattattt gtttttggcc aaaaagcctt ttcaaaaagc ccctaacttt
      541 tgcttgtatt ttcaggaagt gctgaacagc gttccaaagt tctgctttcc ttttgacgtt
      601 gaaaggtatg tgctacagtt atcatttaaa aaatatttca tagaaaacat aattacaagc
      661 aaggatttaa agaaaa
//
LOCUS       KCLJ01003350             372 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 373168cal ultra-conserved element locus
            uce-3384, sequence.
ACCESSION   KCLJ01003350
VERSION     KCLJ01003350.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 372)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 372)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..372
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="373168cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>372
                     /note="ultra-conserved element locus uce-3384"
BASE COUNT          112 a           66 c           81 g          113 t
ORIGIN      
        1 gaagaagaaa atgactggta tagtactttc tcctctcagt tccttctcca ctaatgccct
       61 tacacctttc tttttctttt tgtagcatcc taaacagaag gatattgaag ggagctgatt
      121 ctgctttgat ccttatgctt gttgtcaaag cgcttgggat tgaagagact gttggctaca
      181 attgactgtg acaattagga gatgatcaga gccctagagt ggagcactta aagggtaatt
      241 tacatgtcag tttgtcgaat aaaaaaaaga tattcagcta agacccctta gagccttgta
      301 aactgcaatt tgtgctatag taagaaaaac ctggcagagg agttaggata gccatttcca
      361 tttgaaaaga gg
//
LOCUS       KCLJ01003351             538 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 373274cal ultra-conserved element locus
            uce-1036, sequence.
ACCESSION   KCLJ01003351
VERSION     KCLJ01003351.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 538)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 538)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..538
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="373274cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>538
                     /note="ultra-conserved element locus uce-1036"
BASE COUNT          140 a          127 c           97 g          174 t
ORIGIN      
        1 agctatttag gtattttctt ggtctgtctc tggatttttc attaaaaata cgtggttaac
       61 agcagccaac ctgatttgca tgtgtgtgtg tgtgtctgat ttgttcaccg ctatgcctcc
      121 tgtgtcctac atcttaatca catccaggca cccgccccat tacattacca gaagggaagt
      181 gatggacatc ccttgactct cttcatgacc ctctgataat cctgtttcac acacaggctc
      241 cctgctgtat gaaacacaaa agctgccact gtagttcttt acttccagtc gatattctga
      301 cagacttgat ctagcaaatt agtatgccgt ggtaggggca cgacaaaaga cccttttgac
      361 acactctgaa tcgatacaaa ggccaacaga gagccatttc accgtagttc tgttattttt
      421 ccccttttga tgacccttct tcttcttctt tttttttagc ttgtatgacc ttgtcagatt
      481 taaaaacata atgttagaaa agtcatcctt ggacaggaga agaaaaatct aaacatgc
//
LOCUS       KCLJ01003352             651 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 373386cal ultra-conserved element locus
            uce-5847, sequence.
ACCESSION   KCLJ01003352
VERSION     KCLJ01003352.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 651)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 651)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..651
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="373386cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>651
                     /note="ultra-conserved element locus uce-5847"
BASE COUNT          203 a          113 c          114 g          221 t
ORIGIN      
        1 agttgctatt acagcaaagc taaaggactc gttttcaaac atatgctgag atttaagtag
       61 aaacataatt gattgggtac tagctctcta tagtaggtaa ataaaaataa aaagacttgg
      121 cacttttaaa aggtaacttt accaaagaac aaagagccag taaccaataa ttctgatttg
      181 tctcagcatt gcgtcttctg tactctttat ttttgccgga ccagtttgcg gttaagagaa
      241 tgtgcctgta catttgcatt taggttttat aattttaatt gatgtatgga cacaaaagca
      301 tgaaggaaga cttggatcca agcagtgcca cactttacat catcactaca agtgttaagt
      361 gtaaagaaaa ccaattttga aactatgaaa ttcctgattc aagttatttg tacttcacat
      421 attagataat tcactgctac taaagctttt tattacaatt gcatatgttt taaattgaat
      481 gataaattaa gttgtcttcc aaaactgtgt acttctctgg tcagctgtat atgatcagtt
      541 atctacctca aagtttattt ccttttgtat tgggacaggt tgctggccct ccctgtttcc
      601 acagaccaaa tcatcctagc tcgggagcta gggctaagca gttgtttctt t
//
LOCUS       KCLJ01003353             531 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 373498cal ultra-conserved element locus
            uce-7578, sequence.
ACCESSION   KCLJ01003353
VERSION     KCLJ01003353.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 531)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 531)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..531
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="373498cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>531
                     /note="ultra-conserved element locus uce-7578"
BASE COUNT          151 a           96 c          125 g          159 t
ORIGIN      
        1 aacaaataca aatatgtttc tgtattaacc tagaaagtaa gttgtgtgat gaaaacccat
       61 ctgaagcaaa tgtggtattt tcttttcaga atggatgaaa tatttcaagg aagtcagaca
      121 tgatctgcaa aaaaataact ggaagagtcc cttacctgcc gagagatgga gctgcttgta
      181 ggatctggca ccgcagaaat aaggttggca gtgctctttc tatgaacact attcatacca
      241 ggcattttag tgattttaca ggctttgcta ctagaactag agtttttacg tttttttcct
      301 tctgatttgt caaaagaaag gggtagagaa gacactgcat tatgtgctcc cagggagtgg
      361 tcccctgagt ggtgcacgag agaagataca gacagattag aagtgtcaat actgctcact
      421 accatgctca tgtgtttcac tgagtctgtt gaactgcttg acagtgaagt ccgtcctgag
      481 ggctccgatt tggcactgag tgggcttgtt ccattattgg tattgtgcac a
//
LOCUS       KCLJ01003354             778 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 373608cal ultra-conserved element locus
            uce-6472, sequence.
ACCESSION   KCLJ01003354
VERSION     KCLJ01003354.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 778)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 778)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..778
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="373608cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>778
                     /note="ultra-conserved element locus uce-6472"
BASE COUNT          249 a          133 c          144 g          252 t
ORIGIN      
        1 aagagcacta aggaagatga tggattaaag cagatgcaga ctgtttgtgg ttatataaga
       61 ctattaggta ccctgcttgt tctggctttt gtaatttgtc catgtcctac tttatataac
      121 tcaatccatt gtgagcaaaa acatgaaata ccagaatagt tcatatttca ttttgtcagc
      181 aaattagaac gaaacacaat agacatcata tttgctgagt atagaagtga gtattttttc
      241 atatcaaagg agtctgaaaa gaacagaagg ttaagaagat ttctttttac aatgagcaga
      301 tgtgcttgtt actgttgatg gacaagctta tccatttaca tcaattaata tcaacagcaa
      361 gcacatcaat atggaagctt gtcctgacgc cttgattttt tcccatctga caggtaatag
      421 tagggctggg aaaatgtcac aacaatttag tcatgctcca ctggctttaa ctagttcagt
      481 gacaatggga atgcatcatg ctaagattcc ttatgattca taatggtact gcattagtcg
      541 gctattgcag aggatttaaa ctagtctttg tcaattaagg gtttaaggtc aaatcctctt
      601 ttttcattcg tgcattaagt aaaagcaagt taaaatattt atgaatggca ctgaaatgtg
      661 gaaactttct ttaggaacct gtcttttcat attgagtcat aactgaaacc aacaatgttt
      721 gacaaagaaa cgctatttca tcacatggca tggcttatcc ctcccttctc taaaggcc
//
LOCUS       KCLJ01003355             283 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 373721cal ultra-conserved element locus
            uce-6032, sequence.
ACCESSION   KCLJ01003355
VERSION     KCLJ01003355.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 283)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 283)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..283
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="373721cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>283
                     /note="ultra-conserved element locus uce-6032"
BASE COUNT           81 a           59 c           54 g           89 t
ORIGIN      
        1 ccccatcccc cttccctcca actttgctat ggctgtctaa agaggcccgg agagataagt
       61 caaaatctga actgtaacct tacacttata tacttgttaa gtgacttttt aacggtctgt
      121 ttttgctaga aattggattg cttttaaact aatgctgtct ggcgggcaaa agtgagtgaa
      181 atcacaaagc ctggaggaac actaattact tgttttaatt agcaacaact ttcactagag
      241 tataatctcc ctacaggcca ctttttggta ggtgtggaaa att
//
LOCUS       KCLJ01003356             736 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 373820cal ultra-conserved element locus
            uce-6692, sequence.
ACCESSION   KCLJ01003356
VERSION     KCLJ01003356.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 736)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 736)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..736
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="373820cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>736
                     /note="ultra-conserved element locus uce-6692"
BASE COUNT          203 a          121 c          153 g          259 t
ORIGIN      
        1 tctgtgtaag attgtgaagg cattcataat caggttgtgt ctaacatttt ttttaatagt
       61 agattcaacc attgcttaac tctctttgtt ctttacaaag atatcgttta aaccacagtg
      121 tagcttatgt actggggcaa aatctctgta gttttagatc atttgggatg ggatgtactc
      181 tgtgttctgc ttgatcattg aaaatccaga ggaccagcag gaatgagtgt tttaggtttg
      241 cacacatttg tgagatactg cattgtggga atagtgctga gttccctgtt atcatgcaag
      301 caattgctaa ctgtagacct ctgactttgt aatttgttct ttatggacta gcctgcagcc
      361 aataagcaaa atcaatagtc tttgctgaaa agtaagcaag tgccagtgtg ttatgtgaca
      421 ggtgaagata catgtgctta ccaggggtca gggggccaca tcaaatttct ctctgacttc
      481 ttttcaaaaa gctaaatcca tttagggagc attcgtcatt ggaaaatgtt gcagtgggga
      541 attagacagg ctcctgctct tcttttctca tttaacgatg tttgttttca acagtctgtt
      601 caataatgtc actgagaaga aattatgtga gaagaataaa gtgcttatag tctatttatt
      661 tattcattca tttctgtaga ataacactag ctgttgcatt ctcatgttta ttaatgctat
      721 tgtggcagtc caaata
//
LOCUS       KCLJ01003357             716 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 373929cal ultra-conserved element locus
            uce-3987, sequence.
ACCESSION   KCLJ01003357
VERSION     KCLJ01003357.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 716)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 716)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..716
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="373929cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>716
                     /note="ultra-conserved element locus uce-3987"
BASE COUNT          209 a          187 c          145 g          175 t
ORIGIN      
        1 gttcaagtct cggcagcctg catgccgctg acagttccaa gaaaaaatga acctatttgc
       61 ccttttcttg gtctgaaatg ccaaaataga aaagcgcaac tagagtcatt aaaaagaaag
      121 aaaataagca cgcggttatt acactagctt cctgagcaga atccaaattc tgtttttcag
      181 ccttcacaaa agagcaaatt ctgcatctac agttggctgc agtgaaactg tacatcttga
      241 ctttttacag cttttccata ctggggccca cttcctgccc agttgaagaa aaaaatctgg
      301 cctgaagatg aaatgactgc ttaacattac actaaaacat ctggtaccat tttatacaca
      361 gacccatgtc tgagagcagg caattctagc ggtctcacca gcggcacagt gcatacccaa
      421 acctccccag ggtgacatca tcccatatat ggactctcag gcccagccct cccccttttc
      481 ctggtcctaa attcattgcc agatccccag tctgctgcaa atgtgccacg tcaagactgg
      541 aaatcacagc acttcagtgt gtttcagtga gtgctgcaga gtgtgagcga gagccgagca
      601 caacccgtga tgcaggaagg cagtttttcc ccgagactaa aagaggattt aaaataaata
      661 aatagacgcg tccggagatc ctgctccgtc gccccagtgt tcagactacc tgttca
//
LOCUS       KCLJ01003358             724 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 374037cal ultra-conserved element locus
            uce-4435, sequence.
ACCESSION   KCLJ01003358
VERSION     KCLJ01003358.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 724)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 724)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..724
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="374037cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>724
                     /note="ultra-conserved element locus uce-4435"
BASE COUNT          200 a          149 c          153 g          222 t
ORIGIN      
        1 agaggtttgt attgcaaaga atacaaaact tgtctttttt ttttaagtga acaatttagg
       61 aggcaaccat ttttgagatt aatcacaatt tttaaaggtg ttctgcccag agtgagccgt
      121 atgtgaagaa tgctgccggg gctgtagagt aaagaagagc ctatagatca cagcctacag
      181 cttttatcac cagcttatca ggggaaggtg tcacctggcc tgtgatttct aaccactgct
      241 ctatattctg ctttaatgta aacctcttaa gcgtttcttg cagccagtta cactgtgtgt
      301 tctcatcaag gctactgtta taaatggcac acatgcatat tgatgggaat gagtcaaaga
      361 catttgtaag tcacatcctt gcatcccaaa tgaatcctgc ataaacacca caaccttttg
      421 gaactgctga cgacactcga gtgagcagaa gcgctcttcc ttctttattg gtttaagcag
      481 ggatggttta ggagagaaaa ttaaactttt atatcactgt aatgtacatc ccaatatggt
      541 gaggtacaga tgggaggttt ctgtccccat cagttggagt catggaacaa ggaaggtcat
      601 tgggagcctc ctgctctcct gagctgacaa aaagcaaaac tttactggcc cttagctccc
      661 tttgcttcct tcttggtaca aaactgttct gactcttcct ttctaatgat gtagcaatag
      721 tctg
//
LOCUS       KCLJ01003359             661 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 374143cal ultra-conserved element locus
            uce-460, sequence.
ACCESSION   KCLJ01003359
VERSION     KCLJ01003359.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 661)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 661)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..661
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="374143cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>661
                     /note="ultra-conserved element locus uce-460"
BASE COUNT          218 a          121 c           93 g          229 t
ORIGIN      
        1 ttcaagacac tataaaaaca caacaaaaat cataaaaatt ccttttgtct caaacacata
       61 ccttagcagt aagggatgta tccctaaata tttcctcagg aaaaattaat gaagcaaatt
      121 aaaagttctt tcaagctgct ccaaacaaac tcatttcaca gccttttatc atacttcctt
      181 gccgtttggg aaatttattt aagttattaa aaaattccct aaaattctca gctgaaaagt
      241 tggcttctgt tttttctaca aagctaactc acctgatttg tcagaacagc tcgaaaatga
      301 agtgctaact ggtgggtttt attgaaagga aaccaagtgg aacaacatat gtattttctt
      361 aggaaactaa aaagctcaca gtcctgtggt gttccttggg gtaaattctt tgttatgaat
      421 tacaacctgc ttactgatga gttgttaata aaaagtagac ctgctgggcc attatttttt
      481 tccacacagt atacccagtt tagctttttt tttacgtttt cattaataca ctgagtgtga
      541 ataaatctgt ttccaatttg taattgtttt cccttcatct ggacattaat ttattgccaa
      601 atctaacact cttctatttt taatatccct ccaaactgaa gagttgtttt aaaaagaaaa
      661 a
//
LOCUS       KCLJ01003360             540 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 374248cal ultra-conserved element locus
            uce-3099, sequence.
ACCESSION   KCLJ01003360
VERSION     KCLJ01003360.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 540)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 540)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..540
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="374248cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>540
                     /note="ultra-conserved element locus uce-3099"
BASE COUNT          130 a          106 c          143 g          161 t
ORIGIN      
        1 tcctaaataa gactgctgtc ttgctgatct gtgcccagat cgtgtgtaaa caaggtgtcc
       61 caatgtgttg tatgtcagtc cctgaatttc tatgtttgcc tcgggaaagg tgaagagatg
      121 ctcagtttga ccttgctttc tttgcacgtg cctctaattg atcttgaaaa gaagggacag
      181 ttaaagaaga tgttaaggtg aaatgaagcc ataactgtga ctggagactt ttattcaaaa
      241 ttccctgggc tgcgtataaa ttgtttattg attttggtat ggctgggtgc tctggagtaa
      301 tcgcctgcag aaccactaga gagcgagcaa gagggctttg ctaagtctct gctgcttcct
      361 gcccctgttc ctgctgcctg tgctggtggt ctcctcttta acctgtaaat gagcagggat
      421 gactctccag agagggcctg ctgttccaga agtggctggt gaaagaatat agtaagggaa
      481 gagatggctt tggaggacgt atcatacaag tgactgagac ttaaactgcc ctttggctct
//
LOCUS       KCLJ01003361             719 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 374352cal ultra-conserved element locus
            uce-3573, sequence.
ACCESSION   KCLJ01003361
VERSION     KCLJ01003361.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 719)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 719)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..719
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="374352cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>719
                     /note="ultra-conserved element locus uce-3573"
BASE COUNT          247 a          109 c          123 g          240 t
ORIGIN      
        1 cccccaaaac aatctgaata atgaatcaaa tggtctcagg agtaattgga tctttttctg
       61 tgtaattagc aatttttccc cttgcattat aatttaaagt actgtggatg aattgagcaa
      121 ctcatgtaat gagtcattag actgaggctt ttaaggaagt tatttctgaa ggtctgtgga
      181 ggctaaaata tgtctaaatt aaaagaatga caggctgcaa tcatggctgt aaaataaagg
      241 tgctcagtaa gcagtcctat tacaatcaga aagaaaaaga agcagatctc tgtcttgtgc
      301 atggaagcag aggaaatgat gaatacctta ggtaactcat tctgtgcaaa atcaatcttt
      361 cactgtcaat tttaaatgaa ctaatttgtt cacaaatctg ctcagtcagt ttggaagcat
      421 actcagttca tccatattag caaatccttt aatcttgact agtccactga gtaagaaatc
      481 tagaaatgtg ttaatatgac tggacatatg tagtaggata agaattgatt cttttaatta
      541 gtgtctattc aagttatagt tccttctttt actgaactat tgacccactg atatataaag
      601 agattactgt tatgactaaa ataccttccc aagttatatt taactctttc tttattggtg
      661 aatgtgagat agaaaaataa tctttgagtt atccaaaaat aaacaatgta atctaattt
//
LOCUS       KCLJ01003362             670 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 374462cal ultra-conserved element locus
            uce-6478, sequence.
ACCESSION   KCLJ01003362
VERSION     KCLJ01003362.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 670)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 670)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..670
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="374462cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>670
                     /note="ultra-conserved element locus uce-6478"
BASE COUNT          174 a          164 c          138 g          194 t
ORIGIN      
        1 atttctcagg ttcttttccc ctttgcacaa tgtatgcagg gacaagaatg tgtaagtgcc
       61 accgccaccc cattcagact ttcactgaat tggtgtaatt ggattttgca cctcaatttg
      121 caagatacag ttcccctgaa aaccaaccca ttttggtaag cataaaaata aaatgaaata
      181 aaaataataa taaagacagg gcaggcattc ataaggtacc aggtctccac agtcttcagc
      241 tgagagaccc cagatttcaa tgtaccctga aaagggtgat taatttaaag tgagtggagt
      301 ctgttgcttt aagacaagct cataaatcgt gaaagatcac cacttctttt caaaaggctc
      361 tccacggtct gagtttccct tctgggtcag taaaggcatt gaagttttaa tggcatgcca
      421 tggcagatta cacgatacag ctgtcccggc accgtgaaaa ttaagttatg ccccgtgtca
      481 gcaaggtttt ttttcccttt tctttcccta ccctcccccc ttcactctcc ctctttcttt
      541 ctctttccct gtccccttct tcattctcct ttttgctggg aagtgcgcat ccagggagga
      601 ggtgggagcc ctgcaggagc tgctgccacc ccagctattg agactgagta aatggagctg
      661 atgggtgaag
//
LOCUS       KCLJ01003363             833 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 374572cal ultra-conserved element locus
            uce-2177, sequence.
ACCESSION   KCLJ01003363
VERSION     KCLJ01003363.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 833)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 833)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..833
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="374572cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>833
                     /note="ultra-conserved element locus uce-2177"
BASE COUNT          276 a          183 c          146 g          228 t
ORIGIN      
        1 gaagagcaaa tgtcttttag ggtttcaagc tcctgtataa gtttcttgtt ctgaacttct
       61 agcactgcaa cacgactctc cagacatttt atgtattctt tcttccgacg tcgacattct
      121 ttagcagctt ccctgcaaaa agcagaagta aacagtgcaa acaaaaaagc catttgcatg
      181 ccattagaaa gctcagcaga gtatggagac tatgacagaa ttccaaattt tggaatatct
      241 cccaaatcag tctgaaaaca ctaagcaaaa ctgggttcca caagggcctc aagtgtctct
      301 ttctcaagtt catatggcaa tctgtagaat tgcttcctct catgccttga ttaaagttca
      361 taataaagga ggtccaaatg aaagacagtt attctgcttt atgacaataa agatctttga
      421 gggccttgag ttcctcaatg agagtcttgt tttggttttc aagcacagcc acacgatttt
      481 caagacattt gacatattct ttcttctttc tgcgacattc tctggcagct tccctggaac
      541 caatacaagg caaatgacta caggaacagc cacaatatgg caaagactgg aaaaatgcaa
      601 ttacctgcaa tctctgtaac aacaacccca ccaactgctg gattgcacaa acagaacatc
      661 ggataacatc cacataatcc aaaacatcta aaaccagcat caccaaatac aaagatggaa
      721 ccaatacaca gaagaatcga gaaaaacagg gagtaactga tgatgtattg acttgagttg
      781 cactaaacat taggatggaa agcagcattt cttcttccag tttgtctgtt tat
//
LOCUS       KCLJ01003364             582 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 374773cal ultra-conserved element locus
            uce-3512, sequence.
ACCESSION   KCLJ01003364
VERSION     KCLJ01003364.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 582)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 582)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..582
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="374773cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>582
                     /note="ultra-conserved element locus uce-3512"
BASE COUNT          189 a          118 c           82 g          193 t
ORIGIN      
        1 cagtttctta gcactcctct gaagggaagc taatgcttga agtgcatata cctttaagta
       61 tttctaattg aaaaacacaa agcattgcga gaatcagttc ccggatttag gaaagaatgc
      121 aacactgaga taatctcact tttctcatca tcatcctttc attcttctct actccctccc
      181 cagacacaag gtgacatatc caagtacttg tcctttaaca gattcttcag caagcagcag
      241 agcagaaagc cctaatatct attcatttgt aatctgtcat tcttaaagta ttaaggacaa
      301 ttgacgtcac atgtctcagg taattagaat agtcagcctt tgctccacat ttttaaagtg
      361 tctcaaactc ttaatcagta catttattga tgtctttcaa catatctgtt tcttgtcaag
      421 tgtgtgttat taacaaatct tgcatactga attgcacagg agaattatat taaaaccctc
      481 tctattgctt ttgtaattaa ataatatata tcatggtatt ttccacattc ggagtaatca
      541 atctcatgga aaactgctca aaagcaaatt aataaacata aa
//
LOCUS       KCLJ01003365             570 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 374882cal ultra-conserved element locus
            uce-6614, sequence.
ACCESSION   KCLJ01003365
VERSION     KCLJ01003365.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 570)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 570)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..570
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="374882cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>570
                     /note="ultra-conserved element locus uce-6614"
BASE COUNT          159 a          121 c          112 g          178 t
ORIGIN      
        1 ttccctgcac tatttatgat cttgcacttg cctcctgtag agctggcagg cagcctaaga
       61 tgtacaccaa attctgggaa ggaagcaaca ccatttctgt atagtaccac tgtgagagct
      121 agtctgttgg accactttta tttcctcttt tgttcaaaaa tctgagagac acgagatatg
      181 acaggagatg aaaaccctca gtcttcagtt tctctctttc ctccttgcat ctaatattcc
      241 ttttctagcc ttgttctggt atcggctatt tgaaatagtt atatataatt taacattata
      301 caaaagtatt gtcatatcaa acatagtgaa acggattcca aaaacaccat ctggtatttg
      361 ggaatgcact gtgagttggg aacgtgagaa gagatattct ttgccacttt gcttgggacc
      421 cagccattag cagtgtaatt gccaagaaaa ggtgacaggc ttcaggctta atgcaagtgg
      481 ttgggttttt ttctctctct ctctctccca gtctgttaac tctatgagtc ctaaactaaa
      541 agcaaaaggc actgtaagga caacaccagg
//
LOCUS       KCLJ01003366             818 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 374991cal ultra-conserved element locus
            uce-7799, sequence.
ACCESSION   KCLJ01003366
VERSION     KCLJ01003366.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 818)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 818)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..818
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="374991cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>818
                     /note="ultra-conserved element locus uce-7799"
BASE COUNT          228 a          149 c          172 g          269 t
ORIGIN      
        1 gtcctgctgt ggcttttgat gccagtgtac atgccagtat tgctcaaagc attccatgtt
       61 aatcacactg ctttacacaa ggctgaaaat atccagagca ttttcatact ttatatttct
      121 gtctgaaaag taagaaagaa aagacaaatc aaccctttat gggtttagtt gttgcctttt
      181 aactacttag tagctgtatt taatagctag gaacccctgg ttaaacttgt gctcacattg
      241 cccttctggc atagtcctat taaatccata tgaagccaga tatgattatg tgcagatgtg
      301 gtgtgcttca ctgtatggga ctgagccaaa gactttagat gtggtgtatc acatggtgac
      361 ttacattatg aatggatgta ctatacgaaa gttgctgctc cttatttatt gcggtgtgct
      421 gcatggaaca tatttatttg aaagcattaa aataaacgat cctaaagcat gtgcataatg
      481 agagaactgc attgtctgtg tgctgctgta gaggttacat taaagtccac gtaacaatta
      541 cagtacatca gttgtgctta agatgctata caggttggct tgagtggatg gaatgagttc
      601 cctttccaag atgcctatta tttctaggca ctttaactat atttcagata cagttggtca
      661 ctgatacttg tcatgcaagt taacactaat agtctgacag aggggtgtgg ttcccaagta
      721 tgacaccagt attgccaata aaatgtatca ggcctgtttt gcagtgtggt tgatctttct
      781 ttgccagcag tgctcttcat taccagaaat gtgactgc
//
LOCUS       KCLJ01003367             633 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 375101cal ultra-conserved element locus
            uce-2592, sequence.
ACCESSION   KCLJ01003367
VERSION     KCLJ01003367.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 633)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 633)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..633
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="375101cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>633
                     /note="ultra-conserved element locus uce-2592"
BASE COUNT          180 a          140 c          140 g          173 t
ORIGIN      
        1 aataatgtat ttattataga tttgactaag tgaaacagtg aagtgctttt ccaggcggtg
       61 gtgaatattc tgcagaactg cctcagtcac tcacactttg gagattctgt ggcatcaaat
      121 gcgcatagac tttaaagtgc agacccctta acataaaagc tagcccaggc tataccttcc
      181 ctctacgcac ttggcacctt ttccagataa gttacagaat tccattatcc aaattgttac
      241 acatgtgtga cagaggttga cctttagtca tgtcaatcct ttttgcctag gcctggggct
      301 ccagcctaat ggctcaaagc ctgatttact cactgtaata agggcaggag gtcgagcaat
      361 tgtcagctcg cctgctcata ctcgtctcgg agcctggttg aaggctgtta acacaaagct
      421 tttcaaagtg aatttacaac caccaccact gacataggcc aatcagtaca ccataaatgt
      481 caggttagtg agattgagca gtaagtaaag cactgccagc ccactattgg ctgaaatcaa
      541 ttgcttaagg tttaactgag aatagcaatg catgtacaac tacgtctgca gaaccagctt
      601 cagggtggag agtgagttgg agggtggttt acg
//
LOCUS       KCLJ01003368             444 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 375211cal ultra-conserved element locus
            uce-4061, sequence.
ACCESSION   KCLJ01003368
VERSION     KCLJ01003368.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 444)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 444)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..444
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="375211cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>444
                     /note="ultra-conserved element locus uce-4061"
BASE COUNT          109 a           95 c           92 g          148 t
ORIGIN      
        1 gggcacgtaa ctgccagtgt tttactagaa agtatagcaa ttatattatc tcataggcat
       61 tgttaattta accctcagta atcttattca ccttgccagc attgcagtct acagcctaaa
      121 ccagctgttg aagataacct agtttaaaga gttcacggca acgtgaggga ttcatcatta
      181 tatatttact gtctgaggct gatatagctg taaggttttt cagatgccat tgatctattg
      241 cgcatgttcc ctccctgggt tgcaggacgt gcttctattt gcataaggcc ctgggcaagg
      301 ttctttcttg cattgattgg cctgtccaag ggagcctgat gtgctactgc attgatcacc
      361 ctgtcttttc ttggaaggca gtgttgagtt catctcaaac ggaaaactct actgtcacaa
      421 ttttattcag atatagtcct ttcc
//
LOCUS       KCLJ01003369             500 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 375315cal ultra-conserved element locus
            uce-2379, sequence.
ACCESSION   KCLJ01003369
VERSION     KCLJ01003369.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 500)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 500)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..500
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="375315cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>500
                     /note="ultra-conserved element locus uce-2379"
BASE COUNT          151 a           87 c           90 g          172 t
ORIGIN      
        1 atctcactta tggccaaatc aaaggaaaaa ctgttaagtc aattctacct aagtcaacct
       61 cagtggccaa actggcacag atactaacta aaccaagtct aacttttcac tgcatactat
      121 gtgcctgtaa tttaaaagca ctctgtagag ggctgatgaa actgaactgt gtgcactccg
      181 atcgtgtgtt agttgagtgc ttattcagac agcacaaaca agtgcagaga gtgcatttcc
      241 tagccttaat atgggagggg tagtttcctg tagttcatag gcttttatta ttgtgcataa
      301 atgttagaaa acatcattta ctaatcagtt ttatgtattt gaatattggc aattggtgtt
      361 ttttcatctg taccttagac ttcagtgtca tgcttactca ttagagattt cattaaaatt
      421 taaaaaaaaa acttctgcca tagttttgtt tctttacgta atctgcattt ggtattagtg
      481 cttgcaatgg tattaaaatc
//
LOCUS       KCLJ01003370             549 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 375525cal ultra-conserved element locus
            uce-3852, sequence.
ACCESSION   KCLJ01003370
VERSION     KCLJ01003370.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 549)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 549)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..549
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="375525cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>549
                     /note="ultra-conserved element locus uce-3852"
BASE COUNT          178 a          126 c          134 g          111 t
ORIGIN      
        1 gggatttaag ctgtttaaaa agacaaaaat taaagctgaa atgaaacaat aaaaaaaaat
       61 ttcgaatacc aatgagtcaa aatgtttcag aatctgaatc attttcattg tacccatcct
      121 ctgttcctat gttattactc aagggcttat cataagagtt aatggtgccc acagcggagc
      181 catcgcagag atgtgtcctg cccaaattgt cttttttaaa acaagcgaag ttgaaagccg
      241 tcactgaact ggagggagaa aaaggcatca tggtagccaa aatgagtgcc aggcagtcag
      301 ccacgtcttt gttaggagca caagccaggg ctggcgtatg acctgggcac aaacgcagac
      361 aaggcaatgg ttagtactga gggcacctgg ggcacccggc attcctcagg tacatctcta
      421 ggtggggaca ggatgggaca tgctgggaga gacactgacc gcagtcaccg ggaccacaac
      481 aagcactgaa accaggcagc aaacacggcg ccaggtcaac cacaacagtt ctacagcaca
      541 cacagcacg
//
LOCUS       KCLJ01003371             567 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 375631cal ultra-conserved element locus
            uce-7599, sequence.
ACCESSION   KCLJ01003371
VERSION     KCLJ01003371.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 567)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 567)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..567
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="375631cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>567
                     /note="ultra-conserved element locus uce-7599"
BASE COUNT          175 a          105 c           97 g          190 t
ORIGIN      
        1 tttcataagc tgtactcaaa gcagtctgac tatgagacct aactcgtgac acgtgtcagc
       61 ttcagaaaag actcaaacaa aacttttcac attaaaaaaa attgcatttg aagtcctttt
      121 tcacccaaca cataagagca cacaagtctt gacattattt cattttgtta tgcgcatctg
      181 tcaaggaaca gagatatgat acagctgcta aaaactgatg attgtggaac agtgaaactt
      241 gacagcattt catttccttt atgttctgat tatacattta tcaggaaacc tgtatctctt
      301 ctagttgagc tagaaattgg tagaattcag gaactcaaag gcttggcaaa gaactgtcct
      361 attatttggt atcatcttac gttttagaga agttgcttgg ttgagtcatt gttaaagctt
      421 ttgcttcttc tttcattatt gtggttcact atccagagat cacatttcta taggccctat
      481 aactgctctg cagcacaaat taaaggctgg gatatttcat acatatactt cgaagtttca
      541 atggttgtca atcacagttt gtaaaat
//
LOCUS       KCLJ01003372             748 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 375739cal ultra-conserved element locus
            uce-1961, sequence.
ACCESSION   KCLJ01003372
VERSION     KCLJ01003372.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 748)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 748)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..748
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="375739cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>748
                     /note="ultra-conserved element locus uce-1961"
BASE COUNT          265 a          122 c          140 g          221 t
ORIGIN      
        1 agaataacac catttaatca aaatagggga atataaatct atgtagaatt cttctacact
       61 gacagaaatt aagtaggaga aacagagctt tgcttttgag acagcagtta gacatttgag
      121 tgctctatca aagtaagtaa ccacatctca aatactgttt catcatttat agttttatca
      181 catcatatag cataactttc acatgagaac aaaggtcatt ttaaagcaaa ctgttgttct
      241 aaggcaactt ttaatttgag gactaaatgt aaattgctat ggtgaatgca cgttaggtca
      301 ctaaaacaac ggtagctaaa ctcagatgtg acctagcaac ccaggtgttc aggaaaagtg
      361 ctgttaacag taaggattga tgatctaatc aaactgtcac actcagatcc tcagcagggt
      421 ggttggaggg gaggtggagg aggataatat tcagaaagca agcacatgct tagtgttact
      481 ttaaattgat gctgacattt tcaattgtaa aaagaaattt ttccctaagt aatataggaa
      541 acaactctcc taaccttccg gaggatatca gataatcaga gagcttgttt tgcaaaagcc
      601 aacttctcag atgtgtgact ttatgaaata cgaactatca gaagagattc aagatgatag
      661 caagtatttt aatgcttttc ttttacttag acaggcataa atcagtattt agctaactct
      721 gtacaaatgc acttgtacca taaagtaa
//
LOCUS       KCLJ01003373             720 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 375849cal ultra-conserved element locus
            uce-6241, sequence.
ACCESSION   KCLJ01003373
VERSION     KCLJ01003373.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 720)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 720)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..720
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="375849cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>720
                     /note="ultra-conserved element locus uce-6241"
BASE COUNT          230 a          135 c          115 g          240 t
ORIGIN      
        1 attttcaaac ttcacatggt ttatctacat taatacagct ttcactaaca ggacttaaag
       61 gaatagatgt atgctctaaa gatgcacatt tttagtacct tgaattatca taacataaaa
      121 atggtgtgta ttgctctact ctaatcagac tcatttttat gcggttgttg aaagcccttt
      181 tgcattccat tctgtgtctg gaggtctgta taaaaccgat tgagaaaaac caaagtgaag
      241 acacctgctg gcttataaca caaatactaa aatatcttag agcctgctga aaggagaatt
      301 ggaacaatat gtcattactg aaggctcact tgcaagttct aatgtattat aatgaaaaca
      361 gtatgacaaa cctaatgaga cagtgaagat ttgggtaatt gttcctacaa tgtgtggtaa
      421 cttttccagc cgttattggc aaacataaaa cctaatgaga ttttattaat ttaaatgcag
      481 tacatctgca aaacatttcc ttagttgccg tctcctctgc taatctccct tcccacacgt
      541 acttgatcct tttaagttaa ttgttctgca tagtacactt tctaaacaaa acatacaaag
      601 cacttaccat aaatgtgcat taacttattt tgccaaggct tactttttgt gggtacgctt
      661 ccacattggt tggatagatt acagcttctt tcctctctgt aaaaatgtgt ataatgaaac
//
LOCUS       KCLJ01003374             574 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 375960cal ultra-conserved element locus
            uce-3371, sequence.
ACCESSION   KCLJ01003374
VERSION     KCLJ01003374.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 574)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 574)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..574
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="375960cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>574
                     /note="ultra-conserved element locus uce-3371"
BASE COUNT          127 a          155 c          121 g          171 t
ORIGIN      
        1 aagaacggat ttctgctgtc cttgcacagt atcagcatcc cttgatgcct agaaatgcta
       61 taaacatttt ctctctaaaa acagctatga gagtccataa aactgcgtgg agcatcagct
      121 attaggggct cattgaataa ttcatccctc attgcaagcc cataatgtct tttctcagcc
      181 ttttgtgggg ctgttttctc ttcttttctc cttgaattat aaaaaggttg ccttcttttg
      241 ttcacatcaa gctgctgcta gctgaagctt tgtctgtgca aagccaaagt gtgagtttca
      301 atggactccc ccctctttgt tttccaagtt catctccaag tgtagattgt gtatagaagg
      361 ccttctttgt aaaagctgga aaagttgtac aaatgtttga ccagctcatt tggtactttt
      421 gtctcgcctt ctccagcgcc tgtgcatgtg ctgggcagcg acttccacac acacgcctgc
      481 ccgtgcaccc ggacggctgc ggcagcagct gtgcagcagc ccctcacctc cgccctgtgc
      541 aggttgcaac ctcctcgcag gcccgggcca aaca
//
LOCUS       KCLJ01003375             586 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 376070cal ultra-conserved element locus
            uce-4106, sequence.
ACCESSION   KCLJ01003375
VERSION     KCLJ01003375.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 586)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 586)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..586
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="376070cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>586
                     /note="ultra-conserved element locus uce-4106"
BASE COUNT          196 a          127 c           89 g          174 t
ORIGIN      
        1 cagacttttg caaaatccta aatttaaagg aaaggaaaat caaatatcta gcaacaaatg
       61 tacctcacgt gataatcaat tacctaatgt aaaatgcttg aaataaatgc tcttactatg
      121 gattaagtca gctcttcaat taggagtaaa ttcatggcca ctcagaaagc ttcttttaat
      181 tgtgttcttt gtggcaactc cttctcccct gacactcatc atcaacccac cttatacaat
      241 cagtccccca atggtgaacc tgagaaatca atctgctaat gtataatttg taaagctccc
      301 ccgactaaca aatggataat tgattctttc acaaatgctg catcccaatg gatttgaagt
      361 ggatgaacat aagactggcc agttctgtga gaaatgcaat atttacaagc taggaatcta
      421 aacattttaa tagttgtctg tgacttcatg ccttttagcc atggtttgca ggcaaaccac
      481 atgcacatta ggagtgtgaa aagcaaagca atcatacttc aaagctcatt ttacttcaag
      541 aggttcccat cacttctaca acccccttta aagacttttc ataaac
//
LOCUS       KCLJ01003376             643 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 376178cal ultra-conserved element locus
            uce-3570, sequence.
ACCESSION   KCLJ01003376
VERSION     KCLJ01003376.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 643)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 643)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..643
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="376178cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>643
                     /note="ultra-conserved element locus uce-3570"
BASE COUNT          202 a          134 c          107 g          200 t
ORIGIN      
        1 attaatacca actttaagct aaacattaaa ataagaacat cacagctgcg ctctccgatc
       61 cgcaagtatc actttcgaaa gcagaaacat tcacattgca ctagcattag tggaaacttc
      121 tgtaagtggg gagggtggga cttgatgtgc acaaacattt ccaagccagt tacccctttg
      181 catatttttc tgagggggca tccataagta taataaaaaa cagaaactca tacttacatc
      241 ctattccatg ttactttcca agctgtgagt ttcatcttgc attagtcacc atatgatctc
      301 tatcataatg gtgggggtca atgaatagat tagctttatg ggaatttaca gttcttccat
      361 gcatctaaag tttggtaagt ctggtaacca ctgacctagt tttaatcttc ccccactctt
      421 acgtttcatc tcttcaaaaa tcttggataa tgttacaaat ctacctaaac acactcaagt
      481 gtatgtctta tactgcagcc ccgtttagcc tccacttata aatatattga cttaatgtat
      541 gtgtagcaac ttaagttgcc tttattcatg ctgaagtgag aagaatgaaa aatactcagt
      601 agcaatcaaa gtcttagcat aaagatgtca gggccacttt aac
//
LOCUS       KCLJ01003377             718 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 376290cal ultra-conserved element locus
            uce-261, sequence.
ACCESSION   KCLJ01003377
VERSION     KCLJ01003377.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 718)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 718)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..718
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="376290cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>718
                     /note="ultra-conserved element locus uce-261"
BASE COUNT          236 a          156 c          114 g          212 t
ORIGIN      
        1 tttctcctgc aaatgcaatt gcacttatca tatattatca ccaatgttca ataatgtctg
       61 acttttatgc caattactct ccttctaatc aaagttaaat aaaatcgcat cttcatacct
      121 cctctggcta gaagtattca gaaacctata aaagcagctt gcagctaata ttgcacactg
      181 tgtctaggtc tgtcacacaa aagaaagatg acaagttcac tgcaataaaa attccatgct
      241 tagaagacta gagctgctac ctattagtct tcattacttt gcagtcttct gacaactgta
      301 gcaggctgct gagccccaaa tgggggccat aatgtgatct gatgatatat gaagagctgc
      361 taaagggaga gtgaaccatc ctagcctata cattttaaca gttccttttt actgagagcc
      421 cactttacca caagacttca aaaatctgct gcctcagcta ttggtgcagt aaatctgcca
      481 actgtgcctg caaccacatc attttacact ggctacagca gccaatataa tgagtcaata
      541 ataaaccaag gaccttatag gccatgaata gctggtttat attggcagat gcaagcataa
      601 ctaaaacctc tgaccaaaca aaaaacacaa aggactattt ctatgcttcc ttgcagttaa
      661 ttatcttaga gcatatttaa tgtgttttct aaaaataagg taattattaa ttgcccaa
//
LOCUS       KCLJ01003378             445 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 376402cal ultra-conserved element locus
            uce-6333, sequence.
ACCESSION   KCLJ01003378
VERSION     KCLJ01003378.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 445)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 445)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..445
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="376402cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>445
                     /note="ultra-conserved element locus uce-6333"
BASE COUNT          111 a          108 c           89 g          137 t
ORIGIN      
        1 gggtttggct gaggattttt gtgagatatc accgggatca ccttccctct acagcaaaac
       61 atctgcactt gtattgcaga tacagacacc caagagagca taaatttccc tgaatagatg
      121 tattgtttta ccatttattt cctcacttcc tcagctcatc tgaatttcca atatatgagc
      181 tggtgtgtgc acggttcccc ttcactacac cagagcagat tagtgctcgt tgcctctttc
      241 cttgcttctc ttcagatcgt tacacatgac aaaacaactg tcctaattac agcaagtgtt
      301 cccagctctg tcaccgtgac aattactgca atgagggctc aatatctgca gcagacagta
      361 aagtattact gcagttgtgt ttgatagtgc tcaattgtcc cctggaggat tctccgtgct
      421 ttgctaacag ggttcaaaag gtggc
//
LOCUS       KCLJ01003379             764 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 376513cal ultra-conserved element locus
            uce-4693, sequence.
ACCESSION   KCLJ01003379
VERSION     KCLJ01003379.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 764)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 764)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..764
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="376513cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>764
                     /note="ultra-conserved element locus uce-4693"
BASE COUNT          159 a          158 c          209 g          238 t
ORIGIN      
        1 catctgttac aggcttgcgg aactgtggct gtttgaaatt aaacgtgatc tttactgtac
       61 cagctggggt ctgtaatgta tctgataaat gaagtcttcc cgtcggtttc aggtcatgca
      121 aggaaaaggg caaatctggg gagggagctg ggcggggccc tttgcttttc acagtcaggc
      181 gagaggagtc tggttgatgt ctgcagcaga taaaggagac gaggatcatc aaaagacctc
      241 agaacccttt tatctttttc cctctaattt catttgtcgc tgctgtgttg tctgcctgct
      301 tgtttccccc gaaggggtcg ggagcaccag ggccctggct gaggtagtag tttgtgctgt
      361 tggtcgggtt gtgacattgc ccgctgtgga gataactgcg caagctactg ccttgctagt
      421 gctggtgatg atcagctgca gatgaagaca atgacaatgg gaatcccctt tgtattcccg
      481 ggattgcatg ctgctgaggt ggcaacaatt ccttctcctc ctagttctgc aggaggaatc
      541 tagccttggc cacgacccca tcagtaggat gctccttctt agagctggac tttcatgctg
      601 ctctacctga atttgggctg aagagctgca tttcttctcg tgcttagacc ttattattca
      661 aagaggtgga ttttctattt tgtgaagatg gcagtgacag acttgtattt ttgtgttctg
      721 aatatgcaaa acttgtatgt gtgctgtgtt tttgtctgaa tggt
//
LOCUS       KCLJ01003380             707 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 376622cal ultra-conserved element locus
            uce-6937, sequence.
ACCESSION   KCLJ01003380
VERSION     KCLJ01003380.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 707)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 707)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..707
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="376622cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>707
                     /note="ultra-conserved element locus uce-6937"
BASE COUNT          248 a          140 c          128 g          191 t
ORIGIN      
        1 gatttgacac gtgcaagtat acctatgtga acacacaaag ctgccaggtt aggaacaaac
       61 ctatttgtcc taaatcattg acaaacctcc ttaagaagtc accagtaaga caagtaagct
      121 aatcagtcca ctgctagtat taagtctaaa acaatctcca gctgaaatgt gattaatcca
      181 tgcatgacag cttaaaggtc aaagctagaa tgcagagctt cttgactgca aagaaagaac
      241 tgacttattt ttatctcttc tttaaaaatt acagcagcca tgaagtggct caaggagcag
      301 agtaatgaac gtcataaacc tgcctcataa aaatggcatt catgcagtaa tacagcaggt
      361 cagatgagca gggaacattt cattaaaaat tccccttctt gcctacccaa gagagactta
      421 aaactaatca tataaaatgg ctgagtgaca ccattaacga gcattaatat tttaaagctt
      481 taatagtaca acagagctag gctgttacat caaaattata caaccttatt agacagtgca
      541 cttggctgca ttgtacttga actgtcacta tgattggaaa tattaaggtg gccacacaaa
      601 caccttgttg actgttcata cggtttggta gataagccaa attctgggtg attttgtgaa
      661 gaacaagctg atttatctta cccataccaa aggagagaga cctttac
//
LOCUS       KCLJ01003381             809 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 376731cal ultra-conserved element locus
            uce-7529, sequence.
ACCESSION   KCLJ01003381
VERSION     KCLJ01003381.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 809)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 809)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..809
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="376731cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>809
                     /note="ultra-conserved element locus uce-7529"
BASE COUNT          226 a          172 c          165 g          246 t
ORIGIN      
        1 aatttctaaa gttcctgtgt agacagtaac taatttaaat aacttttaga tgctaatatt
       61 caccttgcca aataaattga tttgtttgtg tgtgggtgtt cttgagggct acacacacac
      121 agaagtcatt tgtcagtctc taataagaaa cagaagtgac atctgtcatg cattccagta
      181 aacacattaa gcaaacacaa taggacccta aaatgtttac tcaagtactc taattaattg
      241 tgacttgctg gaacagagtt ttctatgaat taaacacaaa gatccatgct ctctcctccc
      301 ccttcctgta gctttttgtg cagtgggaaa agatttaaac taaagacttc ccttctggct
      361 ctgccaaggt gcattttttc ctcatagact tgactcgcag tagaagttga tgtgagagtt
      421 tgtcatggct gttttgacag tccggtcatc ctaatccagg gatctggtcc ctgtggtttg
      481 tcaattatcc tactaaccct acagcgagag gaacactcaa ggcactgaac tgtcatccaa
      541 taaccaagaa ataatgtcag cagccagtga gtaggggggg atgattttga caacagagaa
      601 gtgtggatca tttcagcatt tattttattt ataggcattc gtaacaaatt aattacatct
      661 cactgcaagg cttcactaaa acttgctgga tccagacctg cctgcagggt gatgagcggc
      721 actgattgca gctcggcaga tccaggcgtg gaggttcgat tcccagtttt gttcactccc
      781 ctcctgtgac cttgagcttg ttacttgac
//
LOCUS       KCLJ01003382             559 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 376839cal ultra-conserved element locus
            uce-2915, sequence.
ACCESSION   KCLJ01003382
VERSION     KCLJ01003382.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 559)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 559)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..559
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="376839cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>559
                     /note="ultra-conserved element locus uce-2915"
BASE COUNT          188 a          100 c           89 g          182 t
ORIGIN      
        1 tgcagaagag aacagcaaca ggaatggagc acaatgagta caggataagc agaaactatg
       61 gactcctgct ctagtattat attattccat gatcatttaa ttttactttt tgatcgaaaa
      121 tttttaaaat tacatgtatc ttacgttcag tttgctgatc aatttaacct gtttgaacac
      181 aaacataact actgcagttt caaactttta aagtcgataa aaatgataaa atgacaacac
      241 agttagtctt cagaagtgat gggttcctgg gttgctaatc cggaatacgt acactttcgt
      301 gcctttgtct ccatcagcag ttctgacttc aagcagcaga atagaagcct agaaaattat
      361 ctctttacca ttagtaacac tttggaaaga tatttataat caaaacatta ccttgtgtaa
      421 gctgttaaat cctacttgtt atctgactat aaataactaa tacctaagta atgtttaaat
      481 tgtaaagacc catttatgtt tgacaaatct ggacatgtct cacagacctt ctagtgtcat
      541 attgtaacag ggcttcatc
//
LOCUS       KCLJ01003383             628 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 376947cal ultra-conserved element locus
            uce-6663, sequence.
ACCESSION   KCLJ01003383
VERSION     KCLJ01003383.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 628)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 628)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..628
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="376947cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>628
                     /note="ultra-conserved element locus uce-6663"
BASE COUNT          204 a          118 c          136 g          170 t
ORIGIN      
        1 gtgattgcct ttaaaagcag aatcaaacat tctgttttgc atcagtcaat gtctagctga
       61 ggtattttaa agttcacttt taaatgatat aatgaacttt aaaaacaata gaaagcaaag
      121 cagagtgcta ggcagttaag aaagagttaa tggaaaatga actacatata tcactttgac
      181 aagaatctac atgcccaatc tgttcttact gaactacaag caaaaggcat ctgggttttg
      241 tccacttaaa gctttttgca aattgaaagg agtttggagt gggtgggagg gcataattga
      301 ggtcactgaa cccattccaa gctgtgtcat tgaaatttcc cagtgcttgt agtatgtaga
      361 agggtggctg ggcaaacaca ggcaagagaa agttgcaata cttcagtggg cagtgactat
      421 taggtaccac tggatctcca acttcattac aaagaacccc tccctcgctg ccgttgtttg
      481 gtgttactca tgtatgcaca tgcacacacc ggacacatgc catactcaca aacacatcca
      541 taaaggagat aaaaggcaag ggaaacttct ctttgatcca cagaatggag tggatgtaag
      601 gatgccaatt tagcatgtca gtttgaac
//
LOCUS       KCLJ01003384             877 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 377058cal ultra-conserved element locus
            uce-1908, sequence.
ACCESSION   KCLJ01003384
VERSION     KCLJ01003384.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 877)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 877)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..877
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="377058cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>877
                     /note="ultra-conserved element locus uce-1908"
BASE COUNT          263 a          158 c          190 g          266 t
ORIGIN      
        1 cagactgggg gcaagaatta ctatagccag tgccatgcct tcacagggac ttcctgttgt
       61 ctgggatgag gggggagaaa agtcagaaaa tagggtcgtt aagactatca aacacggtgt
      121 aaactgaagc cctaatagga tttacatacc attttatgga gaaatggtga aagggcctgc
      181 aagtttggtc cctctaagct tcctgtttta actataaact tgtcatccta taacctttct
      241 aacaaagaca taaacacttc agctacatat attttgattg tttcatgaca gtttactgga
      301 ggcttagcaa tgacagattt cttcattgtc tttttgccaa aatttgtcct ttaagtcatt
      361 tttgttgact gcccctttta gcagctcacc tcacaatgag agaggagaca attaatggga
      421 gggtgattta tcactgccaa aaactgtcaa ggacttctgt tgtagctgga gaaaaagcaa
      481 tttcacatta tggcatttca ttccgaatac attgtattta cagctcacag ttttattttc
      541 agagcctatt atcaggtgaa acagttgcat ctgaaatgtt gtttgtgaca taggtgacct
      601 gttaggattt gataagtatt tacgccagag cacaaggggc tcacacatct gctgttggca
      661 gaagcaatgg aaaaaaataa cctggaaatg aggcgtttga tttttctggt tcctacactc
      721 gagcatctgt tgctataatt aagtggcatt cagtaattgc agagcaatgg tgaaataaac
      781 atatgcattc ttgccagctt ttaggatttg gtgtccttac agtaggagag acaagcaaag
      841 tgacttcagc aagaacaaag ggttctgtaa caaagtt
//
LOCUS       KCLJ01003385             411 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 377168cal ultra-conserved element locus
            uce-4414, sequence.
ACCESSION   KCLJ01003385
VERSION     KCLJ01003385.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 411)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 411)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..411
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="377168cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>411
                     /note="ultra-conserved element locus uce-4414"
BASE COUNT          114 a           88 c          107 g          102 t
ORIGIN      
        1 caataactaa atctaaagcc tgtgaaaggg gatggctgta ctctgtcctt aagagtaaca
       61 tatatagctt ttaatattct aacggtggaa tgcagttaag gacattcttt atttgagggg
      121 ggggagagag agaggagaaa gatttcatta cattcagcac agtatgagac taagtcaaag
      181 tagttttgct aattaaattc aattgctatc cattagacca atggaatgag atgaatctac
      241 catatagctg acacagcaca ggtatgcaat ttggctaaat ggccattccg gagctgcagc
      301 atgccttcct gcgctcgctc gcgtttccag gcgcaccatt cccgtgcgga gcggagacgc
      361 ctcttgggga gcacggccgt gttgggatac gcaggcccag cgcccgagcg c
//
LOCUS       KCLJ01003386             732 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 377271cal ultra-conserved element locus
            uce-1123, sequence.
ACCESSION   KCLJ01003386
VERSION     KCLJ01003386.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 732)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 732)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..732
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="377271cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>732
                     /note="ultra-conserved element locus uce-1123"
BASE COUNT          229 a          159 c          143 g          201 t
ORIGIN      
        1 gatactcagt tgtgctcaat atttagttct gttatgtgca ttatcctgct gaatgatcaa
       61 attaaatgca aactagaatt tgaatgtctg caaacattgg caagaatctg cagctaattt
      121 tagatggaag atttgcagtg tctgttgttt ttcctgttca ttttagatgg gtaaattgta
      181 aaaacgttga ggaatctgac ctgctttttg tctaggtttg caaggcatgc caggggacta
      241 cgtatctcag ggtggtccta tgggtatgag tatggcacag ccaagttaca ctcctcccca
      301 gatgacccca caccaaactc aattaagaca tggacaccca atccattcat atttgccaag
      361 tcacccccac cacccagcca tgatgatgca cggaggaccc cctacccacc ctggaatgac
      421 catgtcagca cagagcccca caatgttaaa ttctgtagac cccactgttg gtggacaggt
      481 tatggacatt catgcccaat agaataaggg aactcaaggg acaaacagaa actattttaa
      541 gacttttgaa ctttgaccag atgttgacac ttaatacgaa attccagaca gctgtgatta
      601 ttttttactt tttgtcattt ttcatcaaca acagaggacc aatgaaacaa gaacacaaat
      661 gtgaaatcat gggctcactg aaatgaatat gtccatgtac agatcctctg gaaaaaaaaa
      721 agactccaag ag
//
LOCUS       KCLJ01003387             887 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 377379cal ultra-conserved element locus
            uce-4964, sequence.
ACCESSION   KCLJ01003387
VERSION     KCLJ01003387.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 887)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 887)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..887
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="377379cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>887
                     /note="ultra-conserved element locus uce-4964"
BASE COUNT          297 a          171 c          150 g          269 t
ORIGIN      
        1 aaataataat aaaaatcaat aactattatt cagtattcat ttgatatttc acaatggacc
       61 actgtgaatt tgaactccag gaaaggttgc tgtttcaagc ctccaaagcg ttattatata
      121 cagtacagag aaataataat ttaaaaacac gtactttctt ttgaaatcta actaaagatg
      181 ttaaaagacc gaaacaaatt aattaaaatt accaacttaa taatggcact gataacaaaa
      241 cagatataga cagagtctag ttacaacagg taatagacgc aggaaagact atccattaat
      301 accgtgggct caaagcaaca cgcctcactt ttaggaaaca taccagcaga aataactagt
      361 gtattatccc gtggttgctt agagatgact taacgagttc ctgagaacag gccattagct
      421 agcatttgct tttgctatta aagctggata ctgttttcac cccttctctt gtctcccgca
      481 gctcagcacc tgtctttgtt tgggagtgac atctatttct ttttttccac caggaattcg
      541 gtgcattttt aggcttgagt ggcttaggag caaaccagct gtgaaattgt ttcttgagat
      601 actgccctct tcataacatt tgcgcaagac cttaataaaa gaaatggcct gttgccctcc
      661 ctgtccctgg ccaattgcac ccatgaaata tatttcagta atgcaatttt ttggggctgt
      721 tgaaacaatt gccgctataa ctgtaaaaca cagctagatt gcttctaaac tactttcaaa
      781 aagtaagtgc tcacaaaaga gtcagttctc aatctacttt tatccttaga agacagagga
      841 aagtcatatt gagtaaaaaa ataatttcaa ggctgtataa tttatag
//
LOCUS       KCLJ01003388             478 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 377493cal ultra-conserved element locus
            uce-3260, sequence.
ACCESSION   KCLJ01003388
VERSION     KCLJ01003388.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 478)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 478)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..478
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="377493cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>478
                     /note="ultra-conserved element locus uce-3260"
BASE COUNT          158 a          108 c           90 g          122 t
ORIGIN      
        1 tttagcaaat cgagcttttc agataaggta aaattagaag atctggcctt cccaaccatt
       61 gttatctttg aattaaggaa gccgttcctg gagccaccat gcagtcccta gctctgctca
      121 gctctttttc acaaacagaa aaagatcagg cttaactagg ctagtctcat ttaggcccac
      181 gcctacaagg gagggtttat taaaattcct tcagcttaag ctgacgcagg ttcaggaaat
      241 ctgcttaagc caagcctgac ctacataagg cttcagactg aagaaggcga gaagaaacaa
      301 gcaaaataca cttttgtatg aagagaccag acatatgcag gatttaaaaa cataaaggtt
      361 taaagattag cacattaccc agctaaaaat tacctaattt agctggagta acaagctctg
      421 acacatctcc cagctccctc tcacaatctc aaactgaaac cgtgctggag atgatttt
//
LOCUS       KCLJ01003389             550 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 377603cal ultra-conserved element locus
            uce-6009, sequence.
ACCESSION   KCLJ01003389
VERSION     KCLJ01003389.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 550)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 550)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..550
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="377603cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>550
                     /note="ultra-conserved element locus uce-6009"
BASE COUNT          186 a          113 c          104 g          147 t
ORIGIN      
        1 aaagggcagg tgtacctata cttcaaggct gctctgtgac tgacctagtt tctacgctct
       61 ttaaaggcta tttaaactta aaaaggtaac acattcctac ttctttctga aaaatccaca
      121 gaatagaata ttggctgaaa aaagaagagc ccagaagaaa gaggagtaca aaagcatgcc
      181 tgcttgtctg tgttcaacac aaagaacatt aaatgaaaac aactggcatg ctgccaaatt
      241 cctatacagg caaagagatt caaataaatt gatttcacgc atcacactga cctgggatca
      301 gtgagcagtg gtacaataca cttgctgctc catgtggggc aaagcccatt aacgttatca
      361 gagacacgag ggggagcagg gcacagacag ggaacccaaa ctctgcgaat aatcactttg
      421 cttgaattgc agcacttggt ttcagtttac taataaatat atcatattgc aagagcttgt
      481 cctctgctca cctcaaaggt ttctattttc aaattataat aaataaattc tacttttaac
      541 acagttgttc
//
LOCUS       KCLJ01003390             378 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 377711cal ultra-conserved element locus
            uce-6841, sequence.
ACCESSION   KCLJ01003390
VERSION     KCLJ01003390.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 378)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 378)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..378
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="377711cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>378
                     /note="ultra-conserved element locus uce-6841"
BASE COUNT          136 a           51 c           67 g          124 t
ORIGIN      
        1 agtataattt attttttatc atcatatgtg cagaaaacac tggaggcatt aaaatgatga
       61 aagaagtgtt atgctaagat cacaaaaaaa gatgcaaaga tgatttatgt tactttcgtc
      121 tccaatttgc agttcattat gttactgtct tctttgacca aatgaaaatt aaggtatttc
      181 agagaagaac tttgggttca agcatcatta gaggaagaga aatgggttct ttgatgaact
      241 tgactgcaga aatctataga gcacaactta atcagactgc actttgatct ctaatgctag
      301 aaggcagacc tatgattgaa caaatctttt taatgcatat tttttcttta aaaagcataa
      361 tatgatgcat aagaatga
//
LOCUS       KCLJ01003391             797 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 377813cal ultra-conserved element locus
            uce-5649, sequence.
ACCESSION   KCLJ01003391
VERSION     KCLJ01003391.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 797)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 797)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..797
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="377813cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>797
                     /note="ultra-conserved element locus uce-5649"
BASE COUNT          204 a          215 c          178 g          200 t
ORIGIN      
        1 agatgctcat tacgggaaac catagggaaa acttaaagaa aacttgttaa agaaaataca
       61 ttcacacaaa gacatacaag atgcaccgag acactgacag aatatagtgc aaaacactgc
      121 attcagaagg aggaaataac agtgagtagg tggatcagaa ccacatgttg ccaggctttg
      181 aatttcacac tcatatcctc cccgcctcct tctccccagt caaaggacgg aaagatcatg
      241 tttataattc agtgaacgac tttaatgcaa gtctggctac tgcactgtac tgtaaagatc
      301 actgcatgca taccttttcc tctgagtgcc actgctgacc agtaagtttg gttgctgtgg
      361 gccctgacta tgcaggagga aagtgtctat gcttggcacg gtggctgatg cctcctcact
      421 tactttaggg ctgccgatct tgctctttcc cagcttgcct ttgctgcgcc gcgactgctc
      481 gtggtcgaac tctaaatcct ccagtcgctg ggtcagggca agcttttgct ggatagccat
      541 gcgcagcaga gagttcaggg tcttcttctc atcctctgca gctgccagct gcctctgcat
      601 ctcatccagc tgtgtgacgt actcatcaca cctagaaaca gggcagagat ctggggaagc
      661 agcccaagaa ccaactccac cagtgagcac attccccggc ttctgccaga ctcagatccc
      721 agcttttgct gcccctaatc ctggggcagc ctgaattctt ctgttcccct ctgaatcaat
      781 ctggacttgg atctaaa
//
LOCUS       KCLJ01003392             472 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 377921cal ultra-conserved element locus
            uce-6575, sequence.
ACCESSION   KCLJ01003392
VERSION     KCLJ01003392.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 472)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 472)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..472
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="377921cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>472
                     /note="ultra-conserved element locus uce-6575"
BASE COUNT          156 a           88 c           80 g          148 t
ORIGIN      
        1 tttttctgca gcatttaatc tctaattatt ttttccataa taacacattc agtgctgctg
       61 cagaatgagc taaatggttt atatttgggg caataaaggt tttttcactt ctattaccaa
      121 agggaaatat tagagaggtc tttgactgtc catgctgtat gagcaaacac cacttaagcc
      181 agactctgct tcctaaacaa gtatttaatc tcctcattaa agatatatga aactagaaat
      241 caatgagcac tggtggctag agctttatag cggaactaat ggctacacct tgtctaacat
      301 aagaaacttc acttgtggtt tacagctgct acacatggag aaacatgaac ctaaaaggca
      361 aagttatgct agtaattaca gtaatggata agcaggtcac ataaatgtgt gacgcaagca
      421 ttttcacttc acatttcatt cccttaaaaa acacagttct tactataagg tt
//
LOCUS       KCLJ01003393             647 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 378016cal ultra-conserved element locus
            uce-547, sequence.
ACCESSION   KCLJ01003393
VERSION     KCLJ01003393.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 647)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 647)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..647
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="378016cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>647
                     /note="ultra-conserved element locus uce-547"
BASE COUNT          221 a          107 c          125 g          194 t
ORIGIN      
        1 gaaataggcc gtaaagttct attcctcaca aaggcaagat atattattgc tgtaacgcca
       61 ttattccgct ccatcacttt taaaccttgt tcccattatc tgcaagttaa atataaccct
      121 atgtaaaaac aggaaggaca gcgctaagtt gtccagctta acagcacaca cttaaaacat
      181 aatagagcac ttgttactgt attttatgga acggaaactc caaatgtaaa gatgtattaa
      241 ggaaatatct caaagttatt agggaaggat atttacaatt acagattgct ttatattatg
      301 cttttatgaa catctcagga aatgaaatag ccctcagctg tagagagtga agagggaggt
      361 aattttcctt aatacgggtg ataaaattaa tctgattgaa atcgctagcg attatttcgc
      421 agaatactga gtggcagtac aatcacttac actcttttat atttttttag tcaaagctcg
      481 tgtagatgaa agctaattac aaagtagtga tgtgaagcgc taaggaaata gtttgtatag
      541 catagaacag gcacagctaa ttggggtttg tgattacaca gattgttgtt agggagaatt
      601 aactaccagc agtctctcct gcaaagcttc tcatcaaggg aaagtaa
//
LOCUS       KCLJ01003394             665 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 378124cal ultra-conserved element locus
            uce-3704, sequence.
ACCESSION   KCLJ01003394
VERSION     KCLJ01003394.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 665)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 665)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..665
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="378124cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>665
                     /note="ultra-conserved element locus uce-3704"
BASE COUNT          206 a          122 c           96 g          241 t
ORIGIN      
        1 tcaaaatgca agttgttaat tatttttaca ctaacagttt tcttcacctc tttaaccttg
       61 aatttttgcc ttttcaacat ttctcattta tgaaatgcct gtcaaaggtt ttgatatatt
      121 cacattcagc aggtagaaag ttaaagttgg ttgcccccat tacagaaaat tatgcttaac
      181 gagaactcat gagaaaaaat gtcttcgtgt tgcattacaa gattcagaat ctgcacttac
      241 tctttacccc tttcttcccc tttcgttcct tcttgtactg ttccttcagt ttacttatta
      301 gtccctggtc tacatcccaa acctcagcag ttggggacag gtcatctttg tctacatgca
      361 gcatattatt aaaagaaaaa aaatcagcaa ttggcaatgc aagctgttgg tgatttattg
      421 tcagagttat taataaatct ttattttaaa ggtgcagtct ccgttttaag tttataaaag
      481 accaagtttc atttaataca gttttccaag gcactgtata ttatcagtta catatttgaa
      541 aattgtacat taatttgtta ccaaggagct taaacctcat aagtaactgt ttaagatact
      601 tcgaaataca caaaatatcc ttggtattta gaaacaatta ctgcatcttt agaaagacag
      661 tgtta
//
LOCUS       KCLJ01003395             567 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 378234cal ultra-conserved element locus
            uce-4007, sequence.
ACCESSION   KCLJ01003395
VERSION     KCLJ01003395.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 567)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 567)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..567
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="378234cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>567
                     /note="ultra-conserved element locus uce-4007"
BASE COUNT          183 a          108 c          116 g          160 t
ORIGIN      
        1 aaaaggtagc agcaattttc acatgatctc ctgcagaaga gcagtatgag gagaattatt
       61 tccaggaaca aactttgcag acaagttacc taattgattg gagaattttt catttcagtt
      121 gtgaccttga agtcagtgat gcctggaatg cccctcagac catgtcatgg gtgctctagt
      181 aaagatctat cgctagatca attactaaag caatggaaca tctgatccta cccttgaaat
      241 taaccaggaa aagtaggtca gcacaccttc agctgacaca atgaagtatt atgctctcaa
      301 tgacccagga aggaaagcac taatgattga tgggaagaga tatttaaatg agaaagttga
      361 agcacactag aattaagcat gtcagaatga tcaagcaact ctagacggcc aagtgccttc
      421 agataacagt agttttggcc aaatctcacg tgcgaaaaca gcagtcataa atgaaatttt
      481 aaaggattta ggcttcaaag gtctaacagt ctttccagat ggtagccttt cctttctttg
      541 ttgatccatg ttttcctttc gtttgtt
//
LOCUS       KCLJ01003396             732 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 378344cal ultra-conserved element locus
            uce-5684, sequence.
ACCESSION   KCLJ01003396
VERSION     KCLJ01003396.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 732)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 732)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..732
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="378344cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>732
                     /note="ultra-conserved element locus uce-5684"
BASE COUNT          216 a          145 c          153 g          218 t
ORIGIN      
        1 ttttgtcttc agtggccatg ccttagtaga actaaatcta cagcacacac acaatgaaaa
       61 agaagatact cctaccagag aaagggaaag cctcagagaa aggggtgtag gctatttact
      121 ccctcagcta caaatcagca tcgaactgga gtgtaaggag tgaatattaa cattcagctg
      181 gctgttactg cgagccataa tagacatgag cattgactag acccaatatt agtgatggta
      241 ctgggaaacc atccttgctt ttggctgcct gaaggcagta gtgatcccct gcttgtccta
      301 tctgtcagtc tatttgatct ccaaatgaat tgcttttgat aacagctata taaatgcaga
      361 actgttccgc tgggccttct taaatgagac tcctctcttt catctcccag tcatttcaaa
      421 aagcagatag acttgttaga ggtttttaat gcaatgattt atgttttatc ttgcctggtt
      481 tgaggcagca tttatttagc actaaattct tctcaagcct atatgtgagg gagaaaggtt
      541 tcagcacaat atttgggact gtgtgcacat gtgcatgtgt ggtgtgctct gcctcatgag
      601 agggaaataa gggatgtgct ttctttttag gaacttaatg ctccaattca cttggatcat
      661 tgcacctcca gccaaattaa acaggaagga aaaaatatta aataaacctc atgttcagtc
      721 catggcaaat aa
//
LOCUS       KCLJ01003397             632 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 378445cal ultra-conserved element locus
            uce-5475, sequence.
ACCESSION   KCLJ01003397
VERSION     KCLJ01003397.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 632)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 632)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..632
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="378445cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>632
                     /note="ultra-conserved element locus uce-5475"
BASE COUNT          220 a          110 c          118 g          184 t
ORIGIN      
        1 agtgcccatc aggactcaca cagggcacct caggtctacc aagtttccat caggaaggca
       61 gagtgtaaat gcagtgtact accttaaaac gagcaaaact aaaaggaatt tttttcgaag
      121 attgcagagt gggaactgca cagagcttct cagtaaatgt cgtaataaag gttcattgat
      181 taaaagaaat tggttctatt gctcataata gcatctcatt gattgagaag cactgcctgg
      241 aatggtttcc tccaaagcag catctgttat gtattaacct ttcagccttc agaatcatgg
      301 gatatgaatt tcttgctcaa actactggtc agatgaccca tccatgacat ttaataaatt
      361 gcaactctgc acatagattt aggatttcat aaaaccaggg aaaaaaatga caggacagta
      421 taactgagtt ctttatgttc caaaattatc taaactcgga gtgtaaattc tattttatta
      481 aaagcatgaa aatcatctag cctttaatgg taaacagcaa tgtaatgatt gaacattgaa
      541 tgaaagaaaa tccatcatgt ctagtttgtt aaaaaactat acaaggacat ggcagtcttt
      601 ggagtagttg aaatgaatgt agttccatat ca
//
LOCUS       KCLJ01003398             334 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 378554cal ultra-conserved element locus
            uce-5050, sequence.
ACCESSION   KCLJ01003398
VERSION     KCLJ01003398.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 334)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 334)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..334
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="378554cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>334
                     /note="ultra-conserved element locus uce-5050"
BASE COUNT           64 a           88 c           96 g           86 t
ORIGIN      
        1 aggggggctg gcagccctgc tggggacacg gggggaggca gcagatggca gatggcaccg
       61 ctgacaccgc ttgtgggctc cggcgctgac tgattaactc tgctgtctga gagccctctg
      121 ctagcgtcag ggtcaaacaa attgttttca cgcttcgtca gaggtttact taattagttc
      181 atttgcaatt agatctcttt gtagccggga tttttagcaa agacatcaga aggagctgac
      241 gctccggctg tctgctcggc gagcactgtt ttggggtttt ccaaacccat cctgtcctct
      301 gccaccctct gggaacatcc cttggactgt gcca
//
LOCUS       KCLJ01003399             825 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 378660cal ultra-conserved element locus
            uce-7569, sequence.
ACCESSION   KCLJ01003399
VERSION     KCLJ01003399.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 825)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 825)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..825
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="378660cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>825
                     /note="ultra-conserved element locus uce-7569"
BASE COUNT          209 a          152 c          168 g          296 t
ORIGIN      
        1 gtcagtggct gttcaccttc cagcagcaag gattagctgt ttgcttttgc agacaaaagc
       61 ggggcaccct gggaagccgt ggctaagaac tttcaaagcg gcttccatta tctactgttt
      121 aggtcaagcc aactagcact tctgagtaat ttataaagtg ctatactctg aggtattgca
      181 caatctcatt atcattagtt tttgcatatt taactacagt ttttaattag atggtatttt
      241 attattcatg cacataattt gactccaact caggcagttc tcttgtaaaa ggaaattcat
      301 ttgaatcaaa agtttgtact tcatggtgtt tagctggcaa gtggtgcaag tctgcagtct
      361 gtaatggctt tcttttaatt tagctaatag ctatcatgtt atgtaccttt ataaatttgt
      421 taaattcata gcactgggag ttgtctctct atgcggtaac tgtaagtagt ttgctgtgtt
      481 tggctttcac atacaaactg tttgctcagg ctccttgatg tattattaaa attggtaatg
      541 gactcctggg acgtcatcta gttatatgcc ttcatttgca gaataaacca tgcgttgttt
      601 tcatctttac tcatgattgt taatggcatt gatgatgaga ggggtgtttt tccactgcct
      661 ttatcagtgc tgctttatta tgcaggcaaa atagccaagc tgctgatttt gtttaaggtt
      721 ttcaattagt catttgactg aacacatctg ttactggcag gcttccagcc ctggactgga
      781 gctattacta gtttacacct gctgaaccat ggccataagc tgtga
//
LOCUS       KCLJ01003400             422 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 378773cal ultra-conserved element locus
            uce-4284, sequence.
ACCESSION   KCLJ01003400
VERSION     KCLJ01003400.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 422)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 422)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..422
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="378773cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>422
                     /note="ultra-conserved element locus uce-4284"
BASE COUNT          130 a           68 c           66 g          158 t
ORIGIN      
        1 ctctgttgtt tcaagattcc ataaactgga gtcttatata ccagctgcta aagcaggagt
       61 tactgtctaa atgatattca caatgagtat ttggaaggtt tacaattata cccttgctaa
      121 taaattgtgc tattttcccc aacagtttta agtgctaatc ttcagaaggc attttaaaat
      181 tagctaaaat tctgtcaaga gatttacaaa aattgttagc atgaagataa ttatgtcaca
      241 gtccttggac tccatctctg attgtgtgca taaatcagaa aatgtcagct gtgttttccc
      301 ttaataatta tccttgcagc aatatattac agtttggatt actattatag tgtcgcttta
      361 gttttataaa ccacaagttt tttctgctga tgaaataatt cacatttctg ttaatatttg
      421 tg
//
LOCUS       KCLJ01003401             861 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 378983cal ultra-conserved element locus
            uce-335, sequence.
ACCESSION   KCLJ01003401
VERSION     KCLJ01003401.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 861)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 861)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..861
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="378983cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>861
                     /note="ultra-conserved element locus uce-335"
BASE COUNT          325 a          171 c          147 g          218 t
ORIGIN      
        1 cttccttgat gataaagaca aaataaaaaa agaagtaaag aagcaaaaaa tcaaattgaa
       61 agtaaaatct tttaaaaacc tatgttaatc tattcttctg tgattgatag caatggtctc
      121 ccaaaccatc tgagcagatc gtgactctcc aggctggcag atattattga aaaaccctca
      181 tcccttgcaa agcaagatgt actaaaactt acaacacaac ccctactata ttctgtaaaa
      241 taccattgct agagtaaagc atgaagattt acaatacaat cactttaagt gccccacagc
      301 caacatcaat cctaatcctt aagagggcta aaaataaaga ttggagggca gctcacaagg
      361 tagctgtgat caaattagga ggctgaaagg acagagaggg acgaagaagg aagcttataa
      421 acatctgatc cagctgactg tggccatatg gcagctgctg cccagataaa gagattaaga
      481 atagaggagt gcgattacag ctgtctggcc aattcaggca gctcaaatct acaagttcta
      541 aattagtcgc aaatacaaaa actccttcaa ataattattg ttacactaaa taaaagattt
      601 caaatgctac atgcaaggaa gaaacagtca agccattctc ccgggtacaa aagtttttaa
      661 acacataact gatttctatc tttcagaagc actacagctg tatgctacta catttctgag
      721 ctactggata tttaaccatg taacgaaaga cttccctaca aacacgtttt agccaggaag
      781 gtccttttgt cgcacactct tgtatatttc attaaacctg taaagtaatt taaaagatgc
      841 aagacaagaa cataaagcaa a
//
LOCUS       KCLJ01003402             552 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 379095cal ultra-conserved element locus
            uce-1297, sequence.
ACCESSION   KCLJ01003402
VERSION     KCLJ01003402.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 552)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 552)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..552
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="379095cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>552
                     /note="ultra-conserved element locus uce-1297"
BASE COUNT          177 a          122 c           94 g          159 t
ORIGIN      
        1 ttgttttcaa aatgctaaat aaacaataca taatgcatcc ctcatcagcc aaaaccatga
       61 gggctctgtg ctcaaataac aggaaacata ttcaattttc ctaacagaag acagttcatt
      121 aagctgtgcc acatcaaata aaactttaat ttctccagca tcagagtcgc aatgaaagca
      181 attgaggaag atgagccata tggtacttct atcagcaaac acatattgct cattccccca
      241 aagttttcta attctgctcc ccagacctgt gtaatataga taatgtgctc tgagcgcagc
      301 aaccatgagc tatctggtgt acacttctaa tactgtattt aatgggaaat aatgaatcat
      361 aaaagcctgc agaagacggc ttttgctaac ctaaatctca gctgtaattt cattgttctg
      421 tgcctaagat gctgtttgcc cttttcaaac agcagcagtt gaacataatt atgctgctac
      481 aaacctgggc tgcgaaagcc ttcctaatag aaccaagttg aaatcctgag cttagctgcc
      541 tgtcaggttt ta
//
LOCUS       KCLJ01003403             521 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 379204cal ultra-conserved element locus
            uce-5689, sequence.
ACCESSION   KCLJ01003403
VERSION     KCLJ01003403.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 521)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 521)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..521
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="379204cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>521
                     /note="ultra-conserved element locus uce-5689"
BASE COUNT          164 a          126 c          122 g          109 t
ORIGIN      
        1 caacaccaag aggcagcgag gcacagtgac aaagcagaca aagttccagt cctgttccag
       61 caaggactgc caaaggcagg tgcctgcact gattggcaaa ggcagcagca gagcctgagc
      121 ccagctccct gacaagggct aacgcctcgc cggcaccccc gtgtaattac acacttgagt
      181 gactggactc tgaagaaaat tgaaggcctg agctgtgaac agctgccatt ttctctctcc
      241 atcacgccag cgtgattact tgagaaatga acagccccag ctcaaagcta ctccagaatt
      301 ctcagaggaa atatggctcc gtgttcaaat aatgagattc ttaaggcaag cgttacttac
      361 aatcacacca cacaccaaaa agggaaaaaa aggagggcca ggaagaaaga acaccaggat
      421 ccctacaaat gagaatttaa gaaacccgta tagggaaact atgacttttt ttgctttgga
      481 gagttatttc gtggatggct actttgaatg tatttttggc a
//
LOCUS       KCLJ01003404             523 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 379307cal ultra-conserved element locus
            uce-2877, sequence.
ACCESSION   KCLJ01003404
VERSION     KCLJ01003404.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 523)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 523)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..523
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="379307cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>523
                     /note="ultra-conserved element locus uce-2877"
BASE COUNT          177 a           83 c           92 g          171 t
ORIGIN      
        1 aaaagacttc catcgttatt ttcagaatga agatatgcta cttcagagct ctgggattga
       61 acagtgttgt tgtattatcc ttttctttgg ccattgctgt gtactatttt tgttgttgtt
      121 ttcctcctct tcgtcaaagt ggcgaaaact ttgtgatcac tatcttgcac atggtggaag
      181 atgtctcagg aaagccgggt ttcccgagga gcaactccac accatttcat gtatttttaa
      241 aacccaactc ctagcactga agatattatt aaaaaacaaa aaaaaagaca gtaagaaaga
      301 agaaaatacc taatctaatg tgtagcagtt acatatttac caaataatgg actcaaaaga
      361 aatagatgtt tgaagagtgc tttatatatt aaaaaatcgc tttatgttta aaaaaagatc
      421 aatgtttttg attgttttga aaggaagaaa gacaatggaa taacatacac ttcaagtatg
      481 ttttaaaaat tatatgaaca ttgtgctccc tgcctgcttg gat
//
LOCUS       KCLJ01003405             759 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 379412cal ultra-conserved element locus
            uce-3376, sequence.
ACCESSION   KCLJ01003405
VERSION     KCLJ01003405.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 759)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 759)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..759
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="379412cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>759
                     /note="ultra-conserved element locus uce-3376"
BASE COUNT          233 a          162 c          118 g          246 t
ORIGIN      
        1 aagcagaaat ctcatccaaa ttattctgga ataaagaatg ctggtttagg cacataagaa
       61 atgtattgat tccacttgct tatgataact tacagctgtg atctcatctt gttattttca
      121 gagactctct gaaacatcta atgctagatt taaggtacac aagattgttg tggctttcag
      181 caacaccgac ttagcacccg tgtcacaaac atttgtttac ttttttccat ttaacttacc
      241 ttttctcatg cagttaaatc atagcatgca ctgtatgctg atttcctctc atagttaatt
      301 tgtatcttta gaaaaagcta taggaaggta ttaatctgct taacatttct aagtacatca
      361 tccaagggat tttgtttttt taatcttaca tatgctcagc agagttactg gcaaaaactg
      421 tacattttct ccatttcatc ctttcaacat caaatggtaa gcagcaaaaa ttggatcaga
      481 cttcaaagac tatgctgtgc tccaagtcac agagcgactc ctccatttca catattgaat
      541 tcgagcagga tatcaaagtg ctaccaaaga acctcaggtc cttactaaaa aagagtctct
      601 aacatctgta gaaagtgaag tgcacagaca aatcacctca gggagcagct agcatttatt
      661 ctcagcagca aatttccagc cttttgattc tcttattcac tgtacctccc tgtctctcta
      721 cagaactaaa gttcttagca agcaggcttt tgtctcaaa
//
LOCUS       KCLJ01003406             586 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 379520cal ultra-conserved element locus
            uce-5964, sequence.
ACCESSION   KCLJ01003406
VERSION     KCLJ01003406.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 586)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 586)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..586
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="379520cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>586
                     /note="ultra-conserved element locus uce-5964"
BASE COUNT          137 a          154 c          131 g          164 t
ORIGIN      
        1 atcagtttgc agtcccttcg tgcagctctt gttatccccg cactccctga tggagaaccc
       61 cgggagagcc ggctctcccc caagtgccac atccaagtat ttcctatttg cctcttctcc
      121 aaactgttta gaaattacta gtagcggata agtaaattgc aagtaaacct agtgaattag
      181 gatgattctc tatcagttta atttatgttt tatagttagt ttagccttct gatttgattg
      241 ccttagtaat gtgaattgcc tacagctgct gatgatacag ctttaattct gttttaaagg
      301 tcatgtaaac atgtgcctgt agcataagga atgcaaattc aattcccttt taatgcttcc
      361 tcacattcac ttcacagcct tcacctagaa aattagcagg atttaatagg gagccgtgcg
      421 gctgttgtga ttccattaaa agcccctctc cccccaggcg tggctctccc ggcccacccc
      481 acgcccgtga ggcggacacg gaggcgcttc ccacgcccgg gtggaaatcg aggcgggacg
      541 gagtcatccc ttcacctgga tgctgccagg gctggaggca ccggga
//
LOCUS       KCLJ01003407             811 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 379628cal ultra-conserved element locus
            uce-1038, sequence.
ACCESSION   KCLJ01003407
VERSION     KCLJ01003407.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 811)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 811)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..811
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="379628cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>811
                     /note="ultra-conserved element locus uce-1038"
BASE COUNT          248 a          189 c          153 g          221 t
ORIGIN      
        1 ctgttcggag gtaccacctt tcctcacccc tgtataaatc caccatctgt gctcacacgc
       61 acacatgtgc cgtcgcgcag caaatgcgcc gagacccgag cgagcgcggg agccaaaaaa
      121 gcaccaggca cacaaaagct ccccaggctg ccccaggtct gcgggagcca ggcggggaag
      181 aaaagatcct ttgctcattg cccaggtgag atagcctggt gcgtcctctc agcctcgaca
      241 cgcgtcaagt aaaagaaagg ttaaaattag aaaattcaat ttatttgata atttcccaga
      301 ataattagag ttaatatggg ttaattaata tgcaaatctc tcagcagatg ttctgcagca
      361 gggcctgtgt gagaaaacag cctttgcttt ctcctacgtg attttggctg tcagttattg
      421 ggtataatta ctgtaactaa ccgaatacac acaaaacctt tggaatataa aattgttaca
      481 gttctagttc tgcacaagct gctacttttc tgcaataaaa gcgaacaatt tctttcagaa
      541 aataggagcc tttttgttcc tttcttgatt taaaaagaag aaatgaatca agtaaatggc
      601 ttatcttttt tctatgcata attaggtcag tattatatga acattccaat gagcagtggt
      661 acaaacgtac atataaaatg atagctcaaa ccacctgcaa aatcacataa aattgtttta
      721 ttcagaatct tttccttcat accagaactt tgaaacgctc cgtgcctctc ctgccaacac
      781 tgccaacatt tgcccaattc aaagggatcc c
//
LOCUS       KCLJ01003408             668 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 379737cal ultra-conserved element locus
            uce-469, sequence.
ACCESSION   KCLJ01003408
VERSION     KCLJ01003408.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 668)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 668)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..668
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="379737cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>668
                     /note="ultra-conserved element locus uce-469"
BASE COUNT          221 a          117 c          153 g          177 t
ORIGIN      
        1 gcagatacct gggaaattga gtgcacccta aagaggatga gtgtaagtga aggaaacatg
       61 ccataattca gaagatgtgc tactagcaat gagtgaaagc tgtgaggagg gcaaaagtta
      121 attaggctac tgtactgctg ttaggcagcg gaaagtggcc accaccagaa acaagatggc
      181 tgctcagcag tgccctaatg cagccaaaag atcatctcct cctctgcaag ggcttatggg
      241 ttaggggaaa tcatacacag atgactaatt tttttatggt tcacagacga tcaaagtgaa
      301 attcagcagc tgttcaggac aagtgaccac tctaacggct gtaatataac ctgctaaata
      361 gagagggaat tgcatgagag ccagaggtta gctgtgatta tcggcaggtg agtgctttat
      421 tgaagttgaa agaccattaa cattgatgga gtaattattt caacttgaaa gtaattacct
      481 tgatgggtga taacttctcc agcgttccca gatttgattg gaccaaacaa ttgtgaactc
      541 ttgaagccta gaaaaatatt acaacaatac tgcaatgttt aaattactga aaccactgtt
      601 agagtatttt aattatgcct aacagtgaaa agattttaat gtacaacaac tggtgacctc
      661 tcatgtat
//
LOCUS       KCLJ01003409             661 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 379846cal ultra-conserved element locus
            uce-14, sequence.
ACCESSION   KCLJ01003409
VERSION     KCLJ01003409.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 661)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 661)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..661
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="379846cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>661
                     /note="ultra-conserved element locus uce-14"
BASE COUNT          201 a          124 c          149 g          187 t
ORIGIN      
        1 ggacctgaaa ataacaaaaa atgctaaaca tcccaaaaca aacattcagc tgctgccaaa
       61 ttccacagta gagagctgca ggctgagaca gctctcctct cgctggggaa taaggggtaa
      121 agtttggcca gctgcccctt ccagcccttc ggggacccac aatccaattg cagtgtctta
      181 gcggatgtga atttcaaggt tacacctggg tgttcaaggg cagggccaag tgtaatcggc
      241 acttagatca tagattaatc ttatttgcca tctattaggt ttgattcctg cttcccgctc
      301 tccctcccta aagccaggat tattgtgata gtttaagata atggattcta acggaagaaa
      361 ggtcacgcag gcattgagat ttggaacctt aagataatat gattaatcta aaagcttctt
      421 tctaaaaggg gagggtacac tctcattcgt ttaattgagg ggagagggag ggagggaatt
      481 agcaacatga aaggaggagt gaaggatcct acttttgtca actgcaatta attaacatag
      541 tgaggaaacc attcattttc aagctgaaaa ctggtctttt tttcttttaa atgcctaaaa
      601 gtgatggttt tttaattgca aggcattaat tgataataac atgcatattg attttcaggg
      661 a
//
LOCUS       KCLJ01003410             429 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 379957cal ultra-conserved element locus
            uce-6763, sequence.
ACCESSION   KCLJ01003410
VERSION     KCLJ01003410.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 429)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 429)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..429
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="379957cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>429
                     /note="ultra-conserved element locus uce-6763"
BASE COUNT          128 a           74 c           75 g          152 t
ORIGIN      
        1 ttaattatca tagtagctgc aaaagaacaa aaaagttgaa acttactcta tttcactttt
       61 tttcatgttt tggtctatgc atgttttaat atgtgtccct ttcaactgtc tcctacttga
      121 ttaatctcag gctgttcttt caggaaaaaa tgttattaca ctgactggag gagcaaaacc
      181 atgggcaggt tggtgggtga tgtgtagctt ctaattttgt cagatagtca ccctgctaaa
      241 gaaaagtaaa tttatccatg gaacttggaa aattagatta ttttcctgaa aactcaaaat
      301 atgtcagctc aaagtgctaa aatattcatc tgcaacaagg cgcagttctt taaagctttg
      361 ccagttgtca ttttagaaat gtaaaaatgt ttatgccctt atctttgcag tctgccctta
      421 tatctgctg
//
LOCUS       KCLJ01003411             606 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 380068cal ultra-conserved element locus
            uce-4438, sequence.
ACCESSION   KCLJ01003411
VERSION     KCLJ01003411.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 606)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 606)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..606
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="380068cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>606
                     /note="ultra-conserved element locus uce-4438"
BASE COUNT          185 a          114 c          119 g          188 t
ORIGIN      
        1 gcagagtgct tttgaacatt cttaaaagca tttactattt acttcaggaa acagcttaca
       61 agtcaaaaca cgctggagat tttcattttg ttttgcttcg agctgccaat tgttagtcaa
      121 gattactatt cattttacag gagtgttaag aatgcaaatg gttaacagta gtataaacta
      181 tatacttggt ttaagtttga atgtctaaaa ctattacaca ctgcattcat ctgcattccc
      241 tgtttatggg aatgaaatat gtagtcattt gaagtccaca atatgtatac tgtgtttgta
      301 ataactgcag attttacaag cacattattc tttccattag gattaaaacc tcaccgaata
      361 gcaatttgtg aaagaattct agcagggccc tgagcccaga actctgacct ctgatgagat
      421 gcttggcagc aacaaactct aggtctaagc aaaacatctg gtttgagtta gacttcctga
      481 aaaaatagcc cctgtactgg ggaaactggt attcactcag ctttgtctat acactttgac
      541 tgactgcaac actactgagg ggggggtgag gaagagcttt gccagaatgc acgtcaatca
      601 ctgcag
//
LOCUS       KCLJ01003412             488 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 380180cal ultra-conserved element locus
            uce-2036, sequence.
ACCESSION   KCLJ01003412
VERSION     KCLJ01003412.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 488)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 488)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..488
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="380180cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>488
                     /note="ultra-conserved element locus uce-2036"
BASE COUNT          153 a          120 c           81 g          134 t
ORIGIN      
        1 aaaaaaaagg cagaaggcct ctctatccac ctaatcacca tatcaatgac acatgccaca
       61 acagagaagc actagtttat ttgattgatc atggtagata aactccaaat aacagcgaaa
      121 ttaacaaatg cttgacattt gctcaacatc cattattctg acactgcttt caggatttca
      181 aagcctggga gtatgcttaa tcaacattca tattccctag tgagctacag gcaccatatt
      241 gcgccccgcc ttagtactga tgaaaactgc atattggcca tttccaaaat gttctgggac
      301 tccacgcagg gccccttctc tcccttgttc ctgttctgca gttttctttt aaacacttcc
      361 aagacaaaag catctgccag tttttctctc tagggatgta tgcaaaatga acttaacagt
      421 tttaaggcaa gagaaaccct cacatctaaa ttcattcata ggacagaaaa gggcctaaga
      481 ggcctctc
//
LOCUS       KCLJ01003413             579 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 380398cal ultra-conserved element locus
            uce-8033, sequence.
ACCESSION   KCLJ01003413
VERSION     KCLJ01003413.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 579)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 579)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..579
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="380398cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>579
                     /note="ultra-conserved element locus uce-8033"
BASE COUNT          184 a          112 c          130 g          153 t
ORIGIN      
        1 aaatcactgt aggaacagga gattttaaac tcaaaaaata actcaatgct gcccttttaa
       61 attgtttcca gtgacaagct gagccacggt ggcatttgtt cctgcacaca cacatgtatc
      121 cataatgatc catccctcgg atggcacagc tcttctgtgc ttgctacctg tcaggcttgt
      181 actccagaac cttgaatatc agtgactcac taatgtttta tgatatttta cctcacttta
      241 tggtagtcat ttatgacagg accagaatga cataaactgc cataaagcaa agcaatgcaa
      301 tcacacaaat gaccataaat caagatagca acagaaaaag gtcataaaaa gggaagaaaa
      361 ttggagaaaa caacattttt ccgaagtgtg gagttagcag cagcgaagtt gaggccagat
      421 ggatgtgagc aggcagagga ttcagagccc cagtgatagc aatcattttg ggaggcactg
      481 acagtgatgc atggatgggc cttttagggc tgcttgatct ataaagagtt tattgcaagt
      541 gggtgaatgg gcttgaagtt atctgagctt tgtcctaca
//
LOCUS       KCLJ01003414             343 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 380508cal ultra-conserved element locus
            uce-6445, sequence.
ACCESSION   KCLJ01003414
VERSION     KCLJ01003414.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 343)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 343)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..343
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="380508cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>343
                     /note="ultra-conserved element locus uce-6445"
BASE COUNT          115 a           62 c           72 g           94 t
ORIGIN      
        1 ggcctcacac gctgcctttt tttgtgacaa gtagcttgat ccagcctgat ctccactagc
       61 tgtttgaaga gtatttcagg actatttgca tcattttatc tctaatgtat aatatatggc
      121 tctaaagtga gcacaagtac tgtcttgtta ccaagcataa aaaagtaaga gcaataaaga
      181 tacattagtt ctctcaagca caacggctat aatgcaagca agaaaggttg ctacttagag
      241 ttaagaggta acctttctgc ctgactaaga caatggaaga gtaaagaaaa tgtcaaatca
      301 agaaaagctg gatttagaga tgaggcagcc cggaatgacg ttg
//
LOCUS       KCLJ01003415             525 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 380610cal ultra-conserved element locus
            uce-3326, sequence.
ACCESSION   KCLJ01003415
VERSION     KCLJ01003415.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 525)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 525)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..525
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="380610cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>525
                     /note="ultra-conserved element locus uce-3326"
BASE COUNT          164 a          103 c           81 g          177 t
ORIGIN      
        1 accctgttta gctgaagtga gcactccagt gtgaactatt gattcagtga tggcagaaga
       61 agatctcttt aatgcaagag tgctccaata tattatcatt cctgatgatg caccttgtat
      121 ccagtaagtc tttttcttcc ctaaaatata ctgttgtttt gacacaaaca gcttgctaca
      181 cttaaggatt ttactaataa aacataatgt tgtgttagat attatgactg ttgccacagc
      241 tgaactgcct tgtcaaatca atcctaatat ggctcccaca ggcacataaa aaccttattt
      301 agctatcagt tatcctaatc actttgttca gtttaagggt gcaatacttc aagacccgtt
      361 ccaatttata catatatgcc cagccattta ataaagtctt gatttatata ataaattctt
      421 gtttggtact ttaaaccagc agtgttttat caagtgtgtt acatgtctcc tcataccccc
      481 aaataaatat gttaatatac acagagagga tacttgcatg gaaaa
//
LOCUS       KCLJ01003416             446 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 380720cal ultra-conserved element locus
            uce-5031, sequence.
ACCESSION   KCLJ01003416
VERSION     KCLJ01003416.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 446)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 446)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..446
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="380720cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>446
                     /note="ultra-conserved element locus uce-5031"
BASE COUNT          141 a           90 c           67 g          148 t
ORIGIN      
        1 acttagatat ggtctaagtg gctgaaaata tccatgaaat ggagatatag ctcttcattt
       61 aaaaccagaa cctttctcat gattacatta acacccaggc tgctgtggac acctgagaca
      121 tccttggtcc taagcagtgc agcctgaaga gcccgctact caataaaata aaatatccat
      181 tctctttaat taacatatga aataaacaca atctgtgaca cctagtgtgc agcagcaatt
      241 aagaggcatt gcttagttaa acctcctaat acctcattta aatatgcaat taagggataa
      301 ttgccttcaa tcaattgaaa tattttacct caattatttt tttgtgaagc tttttacatc
      361 acacttggtc tggcccaagt cttcttatac cacttgttaa agaaacatta ttcttttccg
      421 gattgcattg atttatggct tttatt
//
LOCUS       KCLJ01003417             832 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 380827cal ultra-conserved element locus
            uce-5313, sequence.
ACCESSION   KCLJ01003417
VERSION     KCLJ01003417.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 832)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 832)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..832
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="380827cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>832
                     /note="ultra-conserved element locus uce-5313"
BASE COUNT          241 a          128 c          193 g          270 t
ORIGIN      
        1 atttgcagca ttattgtact caatcatgag aagtttaatt gcagtttgct tctatcattt
       61 tccttgacag ctgttgaaaa aaataatgtg gtagatttgg atttatactg acttccaagg
      121 aggagatatt tgttcaaaag cagtcaggga gtgcaaagat ccatgccaat attcagaatt
      181 cgtatttccc ttgaatggga ggttgtgata aaatggtaca tggtgtgttt tcattgcctg
      241 ttgaaagact ttcatgcagt taaaataagc attttgatgg tggttgaatt aagagttttt
      301 gtcagtctct tctcatcatg gatgattaga ctaaaacgtc tgcttgtctt gacttgagat
      361 caccacagct tcagataaca tgctttgtga ttgaaggtcg aaatattttg aattctaata
      421 ggctgccaga tgaattgctt gaaatagact gtaaaatttc aaggcttcct tttccatctg
      481 ctgtgaaaag aaccattggg aatggttgag cttgatgatc atagaattac gggatggtga
      541 ttctaaaacc ctcaaaggga agttgctatg gagatctagt tccaaactgt gaaatgattc
      601 acctctgaaa ggcttcaggg tctgagaagc tgaacacatc attgttcagg tggtcattgg
      661 ttaggaaatt gctggtgcct gtgtaatcag cactcctgtg gtagttaacg atctaaaaag
      721 gtttgttctg aatgatgtgg gacaacagca atgtgcataa gatggcttct ctcaatcata
      781 gtttgctcag cctggtgctt gtaaaaatat agtgagctaa atggcaggga ga
//
LOCUS       KCLJ01003418             654 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 380940cal ultra-conserved element locus
            uce-326, sequence.
ACCESSION   KCLJ01003418
VERSION     KCLJ01003418.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 654)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 654)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..654
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="380940cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>654
                     /note="ultra-conserved element locus uce-326"
BASE COUNT          243 a           93 c          110 g          208 t
ORIGIN      
        1 ataatttgta taagcatcct aacaaaattt taaagcgtat taaacaccct gttttataaa
       61 cataacactt aatttggaaa catttagaag gtaacgcatt taggataagt gcacaacaca
      121 tgaaaataat aaatgaaatt ttcccagttt agaaaatgaa tgtaattaat taacatttaa
      181 attacatttt taattgcaat cataccctcc caggggactc ataagggacc ataattgcaa
      241 ttaaaagcat gtggattaga taataaaaca atgcagagtg tctgaaatgt gcgatttaaa
      301 atggaaagca gacattgtta tcggcacatc taacttaatt gtagccataa agcaaatgtg
      361 ctgtacaaaa taaaattcac atacgggaac atttaattct tgaatctctt aaaggggaca
      421 cgcttgagag cacattttat gacaggttct gtttgaaacg gccctttaag gctttagtat
      481 tcagggatag tgctttaatg tttttgcatt aataaaagca tagctgaatg ttcctattaa
      541 aatacacaga tacatttaag taagagatga aactgagtgc ctggaattta agttgcagaa
      601 ggcataatta tatcaggaac acatttttct ttgttatgct ttgttttaaa attg
//
LOCUS       KCLJ01003419             342 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 381048cal ultra-conserved element locus
            uce-3117, sequence.
ACCESSION   KCLJ01003419
VERSION     KCLJ01003419.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 342)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 342)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..342
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="381048cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>342
                     /note="ultra-conserved element locus uce-3117"
BASE COUNT          115 a           49 c           58 g          120 t
ORIGIN      
        1 tagtgataat tggcatttaa aagaagtttc catagctcta gaaacaggaa accaaggtat
       61 ctctagaaat caatgaacac ttccgaaata ttgggcaaag tgtagggaat ctttgaatga
      121 ttgattccgt catgattgat cttatttttt gaagtaattg atgttttttt agttcagtcc
      181 gttagtgcaa ataattatta atcaatatgc actcagctct tactttagaa gataatttta
      241 acacatgatt tattctgaac atttcaattg aactaccttt acaaggagaa aatcaattgg
      301 ctagtggtct aaagcacttt aattatctga agagctgtat tc
//
LOCUS       KCLJ01003420             608 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 381259cal ultra-conserved element locus
            uce-5713, sequence.
ACCESSION   KCLJ01003420
VERSION     KCLJ01003420.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 608)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 608)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..608
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="381259cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>608
                     /note="ultra-conserved element locus uce-5713"
BASE COUNT          118 a          175 c          154 g          161 t
ORIGIN      
        1 gatgacggcg tgttgatgag ctctggctcc gcagcctgcg tggtcacagg caagcaggag
       61 aggggcaggg gatggcttgg acacgtcctg aaagccactg cctgcctggg cacccactgg
      121 ctccacactt ttccatgctg ttggcactgc caaggcgaag gggtctgatg gctgcactcc
      181 cctgtgcttg ctttctgtcc gcccagatcc gtctgccttt gtgcaccttc ccttgcaagc
      241 agcaatttct gacagctaat atttcacaga aactggagcc agctctctcc ctcctctctc
      301 tctcttctgt ttatgaagct gagggtaagt gtttaattag ttgcctaatt gcctgggtaa
      361 ttggtagaca tactcagctc tccaagtaat cagtctgaac aggccttgaa aatatctggc
      421 ccaatattca ttagtgcagt taaatcgtta aacagttact gtgtttggtt cctgacaaag
      481 cccggctctg ctggctgtgg ggctgcactc ccgggacacc ccccagggaa agctgctcaa
      541 accctctgtc ccctgtgcag ggtggcaatg ggagatgcct cctttcctct gcctgacctc
      601 ttgctcca
//
LOCUS       KCLJ01003421             488 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 381366cal ultra-conserved element locus
            uce-1044, sequence.
ACCESSION   KCLJ01003421
VERSION     KCLJ01003421.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 488)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 488)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..488
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="381366cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>488
                     /note="ultra-conserved element locus uce-1044"
BASE COUNT          138 a           93 c           83 g          174 t
ORIGIN      
        1 tcttcttccc tagtacagtg gagcagattt ctgaatgagg ctgatgagat ttgtaatata
       61 ccccaagtta atttagacag caggttagcc cctcaacaaa actgtggccc atatacaagt
      121 caaatctgct tttttccttg ggcaatgatt tatttccctc ttaaattggc tggaccagtt
      181 agttttttat ttttattaag tcacactatt cttaaatgaa actattgatt taaagtcagc
      241 ttagtgagga tttaatttgt tttcagggga ttagagcagg taacatggga taattttaca
      301 ataaagtgga atagaagcat tccttcacat taccctcacc tttttttctt gccaggctgc
      361 acagacatta caaattttca agtgaattgt ggaaatacat tcataaatca ggcctaattc
      421 ctctgcctgc ttaaaggcta ttctaaagaa tattttcctt tgaccttgtc catgtttgtc
      481 cttccatg
//
LOCUS       KCLJ01003422             502 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 381478cal ultra-conserved element locus
            uce-3664, sequence.
ACCESSION   KCLJ01003422
VERSION     KCLJ01003422.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 502)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 502)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..502
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="381478cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>502
                     /note="ultra-conserved element locus uce-3664"
BASE COUNT          155 a           90 c          108 g          149 t
ORIGIN      
        1 aaagtaatgt cctgccgtct gcggcgagta caaacaggac cccctaatgg cagccatttt
       61 tatttgtttc ttaagatcca aaggctgctg aaagaacaat tggataaagt tgaggattgg
      121 agaagcttga ttttcttgtt ccagtgaaat gaaactcccg tccttttttt tcttcccctt
      181 tcccttaaaa gccggagtca gctagggggt tgtagctgtg tcaaagccgt tgggatacca
      241 ctgctgatca ctttaattac taggactaag gaggataaaa ttaaaagtag caccattgaa
      301 gcagtggaag aaagcttgcc gagatgtcag tgaactgtga aatataaaaa ttgcatacca
      361 atacattttt ataggaaaca aggaattaca ttacttattc ttgaagagtt tgtccttaaa
      421 tttttcctca ctgtgcatct gcatggcaga tctttaaagg gggaaataac aaagaaaact
      481 gtaatgtctc tggtatgtca ga
//
LOCUS       KCLJ01003423             812 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 381586cal ultra-conserved element locus
            uce-5092, sequence.
ACCESSION   KCLJ01003423
VERSION     KCLJ01003423.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 812)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 812)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..812
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="381586cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>812
                     /note="ultra-conserved element locus uce-5092"
BASE COUNT          248 a          158 c          157 g          249 t
ORIGIN      
        1 tagcaaatta ccctgtaaac agcccacaag agctggtctg taattgaatt gtaactgttg
       61 actttagaca tttggtatat ttgctgcaag aagtaaattt tcaaaacttc atcttgatgc
      121 agtcagacaa aatgaaaggt aatattcttt atctgccaca gattgctgca gatgaactgc
      181 tttcatatga gcttaaataa gatttagtgt attccatcct tcagctggcc acaattgaaa
      241 gtgatcagga tcaatatagc tgcccctgaa tgcagcccag tattgtgcat tacaatagag
      301 gaaatggctg tattcaaaat tttcctgtgt caaattaatt tccatgttat ctccaaattc
      361 aattagatgg gaaccccgtg taactaaaaa agtgtccgac atcccttagt gacaaattac
      421 ggtgcttagt gtgcatatca aggtgaagtg ttgagccttg ctaatcttct cactaattct
      481 caattaccgt aaaatgaagc cataaatcac acagacaggg gatcgatgga aatgttgttt
      541 tcagggtgat tggcagcctc cccaaaggtt ttctgtaagt tggtttaagg ttaccattct
      601 ctaaggggag ggatgaggta gtcttgctca atctctatga tataggccca caggcctttt
      661 ggggatagtg gggagggaca gcaccaattt cagcccatca gacatccaat ttttctcctt
      721 ttcatacctg ctgtagtaaa tgagaaacaa attaaatttc actccactat ctccacagaa
      781 accatttaaa tttttcatgg aaactaaatt gt
//
LOCUS       KCLJ01003424             666 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 381696cal ultra-conserved element locus
            uce-1563, sequence.
ACCESSION   KCLJ01003424
VERSION     KCLJ01003424.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 666)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 666)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..666
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="381696cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>666
                     /note="ultra-conserved element locus uce-1563"
BASE COUNT          153 a          145 c          173 g          195 t
ORIGIN      
        1 ttccctaact ggaagctggg cctgggagga agttgctttg cagctttggg gaacagggag
       61 ggaggagcag caaagttgct tgacaatctg ctgtcccaca aatatttttt ccatttcctg
      121 gtaggtggat taaaagccgg ttaacgagct cagaagctgc atgcgcgctc ttcacaggaa
      181 gtatccattg caatttttgc caagttatct gaaacccctg cttgaaccct tggtctgccc
      241 ctaatactgt tcatcatcct gttttgtgtc acaacaccct gctaccttga ttcactcttc
      301 gtcgttggct aggttttgga tttattactt tcgaggacga acaatcagtg gaccaggctg
      361 tcaacatgca ttttcacgac atcatgggca aaaaagtgtg tagttgtagt tttattttac
      421 cttaagaaag aaccaagtct tgggcaacga gcgatttcac tctttatcca tggaggtggg
      481 gaaagtcggg gcagccttgt gggctctgcg aggccttgtg tgtacagacc tggggtggct
      541 gagcaatctg gggtgaactg gtgctcatct gctttgagca cggtgcaagg agatttccag
      601 ctgttggaat cccagtgaaa tctgagttct tcaaggcttg gtttaagata ccactccttc
      661 agatgt
//
LOCUS       KCLJ01003425             693 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 381807cal ultra-conserved element locus
            uce-2149, sequence.
ACCESSION   KCLJ01003425
VERSION     KCLJ01003425.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 693)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 693)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..693
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="381807cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>693
                     /note="ultra-conserved element locus uce-2149"
BASE COUNT          213 a          129 c          130 g          221 t
ORIGIN      
        1 tctgcataaa ataaagagag aaaataaaat tccagcagct acaagctggc aacattatac
       61 tgtcataatc cagaaatgaa cattgattct gaagaagtcg cttcttcaaa ctttaaggca
      121 acaattaagt attccattgt catggctcaa ttaaatggta tggcctgaga aaattgggga
      181 ttgtaaagtg aggatggaat gtgctttgat cctctttcca gggttattgt ttcattaata
      241 aatgaacatg tcatttgtct caccagaggg agctcctgcc ctccaggctt tttccctttt
      301 ttgttcaggt tttataaaga tgaatttcca gtgctctgaa ataccatgga ttagtagtta
      361 agcctgacag cacttcgggg agtagtgggc ttaaagtgcc tcacacaggt ctccaaagca
      421 cttgtttact aatagaggaa atcagcgacc gtctgcagct gctgatatcg cattaccatt
      481 tggaaagaca gtagctgaga taacaaatca cacagtttta ataattactc ctgcattcca
      541 gttttttgtt tcctgcgtaa ctgcaaaggc tggatttctt ccaaataaac agataaaaac
      601 agtatggaac ttttatcttt taatgataat gacaacacat catgtttcac taaaagtttc
      661 ctgctgaatt tttttctgat ttctagagtt tca
//
LOCUS       KCLJ01003426             358 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 381903cal ultra-conserved element locus
            uce-4011, sequence.
ACCESSION   KCLJ01003426
VERSION     KCLJ01003426.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 358)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 358)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..358
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="381903cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>358
                     /note="ultra-conserved element locus uce-4011"
BASE COUNT          117 a           62 c           60 g          119 t
ORIGIN      
        1 ttggaccttc aattgctaat ctttttactt tttaaaaaat tgaccagaat ataactttta
       61 cagcctctgt cttgtcatta ataatcagaa atgttgaata cagaagggca agttaaatcc
      121 tgtcattgaa acagcaaaca gctttagtca aatgtattgg cacagaatta aaaatgcatc
      181 aagcatgtat ttgtcttctc gatgggaagc ccttattaat agtttgaaga gtagaaagct
      241 tagccttatg caacaagcgc tgtagtagaa atatatttta atgtgtgaaa ttgcaggatg
      301 ccaaggttgc cattaaagct cctctctatt ccagtaattt tcccacttag attcattc
//
LOCUS       KCLJ01003427             704 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 382009cal ultra-conserved element locus
            uce-395, sequence.
ACCESSION   KCLJ01003427
VERSION     KCLJ01003427.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 704)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 704)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..704
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="382009cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>704
                     /note="ultra-conserved element locus uce-395"
BASE COUNT          197 a          123 c          169 g          215 t
ORIGIN      
        1 ggctatttta agaatgtagg acggggttaa ggattagtac cagcatttct tttctgtgta
       61 tcagagctgc ttagcagtaa ttaattagga cattgggttt tgtactcttg gttcaggtca
      121 tttgcctatg agcagctcaa gccttttaca aaggcacgct gcatatgttt ctgggtacct
      181 ttttgagaga agatttaaat tggccagatg aataatactt tgctacaagt gttttgccct
      241 aggcaaaaaa ggttttcttc atattatcat cgcccggagc tggaatcctc aagcttgatg
      301 tgactggtgt tatactgtca catggcaatg atgtaagaac aggagctctc tgtgtcagac
      361 aaatctggat ttaggggaat tatagcagat gttgcaaaat ggcaacagtt tagcaagttc
      421 ctttcatccc ttggttggga ggcaggtcca caaagtacac ccagacagag aagaatgtta
      481 tctttgatcc cccggggcga ggagactcca cccaatgagg gatgcagcga ggctggaaat
      541 aaaaataaat ttactcgctt ggcagtatgg aaattggcca ttatttattc atgctgtttg
      601 cccagacatg tataaaagat ttttcgcgta ttgtgcgcta taaacagatt agggcactca
      661 atattaagat taatggcacg gaatttgtgt gtggttagat taca
//
LOCUS       KCLJ01003428             542 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 382120cal ultra-conserved element locus
            uce-3018, sequence.
ACCESSION   KCLJ01003428
VERSION     KCLJ01003428.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 542)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 542)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..542
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="382120cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>542
                     /note="ultra-conserved element locus uce-3018"
BASE COUNT          165 a           97 c           98 g          182 t
ORIGIN      
        1 aatggaaaag gaggtgaatc tatttatggt ggctatttca aaggtaagag catgtctttg
       61 cagattctct gttcagtcct gagataaaca agtcttgatt cccttaatga aaacaggttc
      121 actcatagat caccttttgc atgaaactaa tgttgcatga gaattccttt tatatgcatg
      181 actttcggat agttaatatt taacaaattg acaattaatt aaggctaaca taattggtct
      241 ttcagcatgg aggctaggca actttattca tgaataaact cctatcttcc tgcctaaaac
      301 tgtcaacata ttcttttgtt tatagagaat gtggtctttt gcaaaatgaa aaggtaagag
      361 acaaaagctc agtaacacaa attcaaactc tgttcccttg tcccctccct atatatagac
      421 aactgctaag tccctttgta gatggatatc tgtgttgctt ggagaaataa agagttctgt
      481 ggggttaatg actttaaaca gtgaatgtcc cttttcctgc ctttccccat tcaaggtttg
      541 ta
//
LOCUS       KCLJ01003429             732 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 382228cal ultra-conserved element locus
            uce-1051, sequence.
ACCESSION   KCLJ01003429
VERSION     KCLJ01003429.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 732)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 732)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..732
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="382228cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>732
                     /note="ultra-conserved element locus uce-1051"
BASE COUNT          241 a          118 c          166 g          207 t
ORIGIN      
        1 caataaagtg cacctgtaga gcagaaactt gactgttctc aattctgttc taattatcaa
       61 gcctcagagc aaaaaccagg tttcaaagaa aactttctgt acaggcctca atagagttaa
      121 aggagaaaca ttttaagttg atgagctgac acttgtagaa gcaaatatat taaataaatc
      181 atgattcgtt ttggggctaa atctgactta catcaactct ggaaaaacta gatcctaatg
      241 agtgacagtt tggtgttttc tgtcacttcc tacagtaatg gccccaagct gacactgctc
      301 tgtgggagtc taatacttct gaacaaaagt ttttttggag tgagatagac aaggtagaaa
      361 tcccaaggtg actggaagga atgtctaatg actggaaaga catatttact ggcagactgt
      421 atgtaagctg tgacagttga cagggcttga ttgtaataaa tatagttgat gaagagaagg
      481 ctgacaggtg aggacagaga gagaaaaaga gtcaaaagat ctgcattggc tgaaccctat
      541 taatggtaag ttggtaacaa agcccagagt cataaaagaa aacaggtatc gcaaactgat
      601 gtctaaacag tgaaatgtgt aggacttgca ggttgctgta acaagctcag atttgttgac
      661 ctttcttcta gctattttgt aagtgctgtt ttcagttcag caggcaggca cctgattttt
      721 taaatactgg gt
//
LOCUS       KCLJ01003430             453 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 382338cal ultra-conserved element locus
            uce-4280, sequence.
ACCESSION   KCLJ01003430
VERSION     KCLJ01003430.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 453)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 453)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..453
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="382338cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>453
                     /note="ultra-conserved element locus uce-4280"
BASE COUNT          131 a           76 c           98 g          148 t
ORIGIN      
        1 taaggagcat ttcacaagct ttgcagaaca ccatctaatg ctaataaaga gtatgtgtta
       61 aggcttcaag gttaatggaa atgtagccaa taaatgctga ttttttttta aggcagcact
      121 gaattattga cattgttagt gcagctgcct ctgttttgat ttggagttat tgttcagtgt
      181 agctgagaga gtgaactgag acactgacag tgtggagaga tatcaagtga gctatttgag
      241 ctgctcatca attgttaatt gtctactgat ccttaaacca gatacctaaa ctgaaaagac
      301 cactttcagc aacagatgca aattatatgg atcctgtagg tgtgtgggcc ctacgacata
      361 agtgctaaat tttttattgt agctttcata tctgggcagg tgtgggcctc caaacctaaa
      421 ttttctctga actcatttgt taactgcatg ttg
//
LOCUS       KCLJ01003431             570 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 382447cal ultra-conserved element locus
            uce-5903, sequence.
ACCESSION   KCLJ01003431
VERSION     KCLJ01003431.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 570)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 570)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..570
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="382447cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>570
                     /note="ultra-conserved element locus uce-5903"
BASE COUNT          160 a          123 c          111 g          176 t
ORIGIN      
        1 ttactgtcct aaaaagcaaa tgtaatatgc agagggaaaa cctgcttaca cagagcacac
       61 atatttctgg gcatctccgt agtgagcaga gggaggatgt tcaattagtc tctttaccac
      121 aagctcccca gttagtctcc ctctggaaaa taggtgagaa attcttatat tcctctcaat
      181 atgttaatca gacaactggt atcacagttc tctaactctg taataccagt cccccttggc
      241 agatatattt tatttggata atgatgtgaa atttaagatc tacgtttcaa ttgtagagag
      301 ccataggcag ttgtcaattt tagtgacaga catgaacctg gagctaaatt cctgtgcaca
      361 agcaaaaatt ccaacaggcg tagagcaatt ccggtccctt aatagaaata cgttttctcc
      421 cattgagggg cagtattttt aaactgcatg ttgcttctcc cggtgctgca aatcccaaat
      481 gttcccagat gcttcctttt atctggacag tttggtggcc tcagctacca aaggatttcc
      541 tgtgaaatct agtggttatc tttttcctgc
//
LOCUS       KCLJ01003432             721 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 382550cal ultra-conserved element locus
            uce-4673, sequence.
ACCESSION   KCLJ01003432
VERSION     KCLJ01003432.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 721)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 721)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..721
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="382550cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>721
                     /note="ultra-conserved element locus uce-4673"
BASE COUNT          205 a          163 c          143 g          210 t
ORIGIN      
        1 tgagtttcat cactgcttct cttgtgctat gcaccagttt tcattgccat taaaaaggca
       61 actagtattt gtacagaact cagcaaataa aaatgggtcc cagataaaag gtgtgtcctt
      121 tctagtaaag cacaaaaaaa tcttaatctt tggtccagaa gcagtagatt gccacaaaca
      181 gtcggcagct aaaatcatta atctttgctg cttgcccaac tggtactagt agtaaagaag
      241 ataatacact agcagaatca gtgacccact acaaattggt cttgaaaggt ccaccagcct
      301 aaatagactt ttgctgatcc aacacttgtt aggaatccca acaaagagac tattggctca
      361 tctgatgagc cgctcactat tgggcctttt gcaatggctg gtgatggatg accataccct
      421 ctttgagggg gaagatgcag ctcctggtat ggggcctttt ctcatcttaa atttgtactc
      481 aataaatcac aggtgcagaa gagacagcat cagtttcatt acacctacat gctccagtat
      541 caatcatgcc aacacaacgg gctgcgtaca gttcatttcg ggaggctctt tctgttccaa
      601 taccatttcc attccgttgt gctttagcat tcctaaagtg ttgaacctct gcagtggatg
      661 ggatgtgctg taattgcact ctttcaacac cagacattca gtttatggta ccctgctatt
      721 g
//
LOCUS       KCLJ01003433             639 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 382664cal ultra-conserved element locus
            uce-7321, sequence.
ACCESSION   KCLJ01003433
VERSION     KCLJ01003433.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 639)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 639)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..639
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="382664cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>639
                     /note="ultra-conserved element locus uce-7321"
BASE COUNT          197 a          129 c          110 g          203 t
ORIGIN      
        1 cgctctaatc ccctattcag tctcaatctc attaacatac caggcttaat tggcatttca
       61 tccctgcatt gtgtctccaa aatgaacaag gtgtaattat gttaaaaaga gcacttgaac
      121 ggttttagtt gaattcatgt cattcatccg cgtcagaatg aacgcagatg ttccattgca
      181 ggatacagca agagatgagc agctttgaaa ccacacttct gagctgcaaa ctttatgtta
      241 aaaaagttat ttaagtgaaa acacagtatt ttcttccttt gtttccgtgg ctatacaaca
      301 ttaactttca aaagctggtt ctgcttaatt tgatttttca ttttcaaatg aacagctgtg
      361 tttaagtcta aaagcccttt gtttaagcat acagagcccc agagaaggtt tgaacaaagc
      421 atctttctgt aaacacttga ttaccaggaa aggcctggct tccaaagtgt ggttttgctc
      481 taggttctct tttaaacaaa aaaattgcat cacttctcag atgtcaaaca acaaaagcaa
      541 caaatgtctt actaattgca tggacttctt gtagtcaagg taaataaggg aagacagaag
      601 aggcttttcc aaagggccat tttccatcct tttttctcc
//
LOCUS       KCLJ01003434             726 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 382772cal ultra-conserved element locus
            uce-6238, sequence.
ACCESSION   KCLJ01003434
VERSION     KCLJ01003434.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 726)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 726)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..726
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="382772cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>726
                     /note="ultra-conserved element locus uce-6238"
BASE COUNT          185 a          142 c          136 g          263 t
ORIGIN      
        1 attattcatg ttgcattagc atatgcactg tttatttccc taattgtaac aagcacttaa
       61 ttaattacac tataacctct tgaatctata ggccaactgt tgcgtcttta gttaatattt
      121 taaagtctca tctttttttt ttccgtgtgt ctttgatgtt ttgtttctta gccttcttgt
      181 ttgggttctc tgtggaacag tctcagaata attctgcagt tctcttttat ggctgaaact
      241 ttgcatttta acagttgtct ggagatagtt tcttctttgt gaaatatcag ttttaataac
      301 aagaaaagaa aaatgccata aatctgcact aactacataa agctgaagtc tctgagagac
      361 tgattaacat tgagactcca cacaggtttt tcaataatta gaggatgtgc ttgcatggag
      421 ccatgactgc tctggccttg atgctgtttc ccagggcagg cagcaattat tatagcccac
      481 agtaaatttc ctacactcgt tgcctccagc cactgaagat ccttttggag taaaggtctc
      541 ttaatttttt cttctcatca gcttggatta gcaacatgtt ctacttattt gcttcagttg
      601 ttttaaattg acagctgctt ttctgctgca taaggttgaa gggatccgat cagagcagtc
      661 ctggagtttc ggcagggcag cctgaaccaa actgttatca ctgtctttgg gctcaagtga
      721 gtaacc
//
LOCUS       KCLJ01003435             730 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 382879cal ultra-conserved element locus
            uce-2830, sequence.
ACCESSION   KCLJ01003435
VERSION     KCLJ01003435.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 730)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 730)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..730
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="382879cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>730
                     /note="ultra-conserved element locus uce-2830"
BASE COUNT          260 a          132 c          153 g          185 t
ORIGIN      
        1 atagtgccat tgcaaaacaa gaaatgcttc atattagtaa atgtacatgg aaacgaatat
       61 aaaaccaaag tgtcaccaag atgaaaaata atttccaagg cccaatctgt cccatataac
      121 actttctctc tttgagattt tctgtaaaaa taagcatggt tgacatcaca aaatgtaata
      181 agtttgcatg catgctgaat gtgtttaaaa cacattacga agcacaaaca catgggttta
      241 agtcaggcat agtccaatca tgataaagct ttttgcctaa cctttataga acttactctg
      301 ataggaagta cggatccgtt tcgttaaatc tggataaaag ttagacaggc cacgcatgca
      361 aaagttgtct ttggaacatg ccagtacacc agcatcagca gcaggcagag gaaagagaga
      421 aaaaacagtc taaagtgaaa ggaagtgatc ataaccagca tctagaacag ccaaggtgaa
      481 gaaatttcag cagatgctta ccttccaatt gggagatatg acaaaaataa tcaaagtaaa
      541 ggatgtggga tggatggtga gaaagcagct gaggcttttt tagatgcata gtttctatga
      601 gcaatctaga agttgcaatc cttctcagct ttatccgcag tgggctccat tctggcagca
      661 ctggatagct ggaatgataa aggattggcc cagatgacag aaaaaacccc tctgtgatac
      721 agggcttata
//
LOCUS       KCLJ01003436             691 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 382990cal ultra-conserved element locus
            uce-4173, sequence.
ACCESSION   KCLJ01003436
VERSION     KCLJ01003436.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 691)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 691)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..691
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="382990cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>691
                     /note="ultra-conserved element locus uce-4173"
BASE COUNT          201 a          133 c          122 g          235 t
ORIGIN      
        1 actagtcctc atcttcacgt ttgaattaaa ataaatcctt ccttttaagc ccctaatgga
       61 atgaaagaag caaatctggt tgcctatgcc attatgaatt tcagagtcta ttcttgctga
      121 tgaaatttgt atgctgtatt tgaacaaact gtcatgctaa tgacattcct cagtctcctg
      181 tcttcaataa taagcaaacg gagtttttaa atgtagttga tgggattttt tctctctcag
      241 acaccctatg aggaaaaaca gaatttccca tttactttca tgacctctga tttaaaagca
      301 aagattgcac attatttact actggatgat tttcctgaaa tttaatgagg actaagtaca
      361 aatatgacag aagtaattat cacagtttta ttctgcacag tcagggtctc cttgtgctgt
      421 aattgcaagc ctttcattca gctgccgata ccagagttat tatcatagta ctttatgtta
      481 tttcagagag gagagaaaca gatttctacc tcacttttac cctgcaaatt tatcccaagg
      541 actcattttg cttggcctca tgctatagct aaataaggga agaatttgga ctaaatcttt
      601 cctgattctc tttacccagc tgcagtgggg ccagaagtat tgaggtattt agcatttttt
      661 aaacatgtgg gcaggtggcc agctcattgt c
//
LOCUS       KCLJ01003437             275 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 383102cal ultra-conserved element locus
            uce-4935, sequence.
ACCESSION   KCLJ01003437
VERSION     KCLJ01003437.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 275)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 275)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..275
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="383102cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>275
                     /note="ultra-conserved element locus uce-4935"
BASE COUNT           62 a           68 c           62 g           83 t
ORIGIN      
        1 ttacttaacc atcatttctg tttagcccta aagaagaata atatcactaa atttcccaat
       61 gttcactcga gggtaaggat ttcttctagc acagccgtgg tggaggattc ccagagctgg
      121 caagcatctc tttttacttg gcttcctcct ctctctctgt gccaggcagc tggtggtaga
      181 tgtggctgag ctaatactgg tgagacccag atccttgatt ttcacctctg gaggtgcagg
      241 gccacaggat gttccatcat cacagttttg gccac
//
LOCUS       KCLJ01003438             717 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 383202cal ultra-conserved element locus
            uce-374, sequence.
ACCESSION   KCLJ01003438
VERSION     KCLJ01003438.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 717)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 717)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..717
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="383202cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>717
                     /note="ultra-conserved element locus uce-374"
BASE COUNT          214 a          143 c          124 g          236 t
ORIGIN      
        1 gaaaaaccaa ctccctttgc taaatcaacc tcagattcaa tatgaatcat caaatttaat
       61 attgccataa tcagtattca ttgaaaataa atgatgccaa atatgcttta agaaaaaaga
      121 aatctgttta aatggtatta atggtaaggc atactacagc aaggtgaaca acactgataa
      181 tattaaatta acccaagagg ctccctaatc aggatcccta tgcagaaatc tgcttgccaa
      241 ctgtcgttct ttttcccatt ggtttagtta agggttgaag ttcttcttga agtttctttt
      301 ttaatcatta gatcccgacc ttacagtttt ctctgactac tttccttcag gctgtctttg
      361 ctcctgtcaa tttaggattt ccagggaatt attcttcttt gaaatgcata ttccaggctt
      421 gaaatactgg catatgtaca ctgtagagta attgtggagg ccaaatgttt aattacacat
      481 gacagctgga gctgtaggag tccgaggcat gcttgaaaac aacttatgcc ctatgcagtc
      541 ttaacgaaaa ggaacaaaat aatatatatt taggttttgt gccacatggt agccgctgtt
      601 ctctctcttt tcacaactga gggtggtttg caagaagttc agctgctttc acttctgtgt
      661 accgtctctc tgaatatata ctctccttca tacagtctag gcacaaactt ttagacc
//
LOCUS       KCLJ01003439             729 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 383312cal ultra-conserved element locus
            uce-3786, sequence.
ACCESSION   KCLJ01003439
VERSION     KCLJ01003439.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 729)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 729)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..729
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="383312cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>729
                     /note="ultra-conserved element locus uce-3786"
BASE COUNT          184 a          169 c          171 g          205 t
ORIGIN      
        1 gcagcaccca gcccctagca gagaggcaga tagtttttga ctgaaatttt gtgagcccca
       61 aaatagtgct ccaagtgttt aatgcttttc tccattagac agcaaattag ccctaggctc
      121 acaaaccaaa tgaagtttca tctcgatgat cggagcctgc tcaccaggca tttttatccc
      181 aagttcctgc atgctggttg gtcagtgaaa tggagactgc aacttctatt tattggtgca
      241 atacagtatt tgatactgct aattacactt aattagtcct tccaccattt aattaaaatg
      301 gcttctaatg attgtgcttc tttggcaggc tctttggtac caccgggaat tgtgctgcct
      361 gcagtaaact gatccctgcc tttgagatgg tgatgagggc cagagataat gtttaccatt
      421 tggactgctt tgcctgtcag ctctgcaacc agcggtgagg acacagttat tgtacacaca
      481 aactaattta taccgaaatg tttgatgcac actgggctca cagcctgggg ggctggggct
      541 ccaggctgac ctggtacctg tagccctttt actgcaaatc cccttggaac tggtgggaat
      601 tggaggggca agggggagga cacgtccagc tgctgctgaa taaaacaaac tgctcctgcc
      661 ctctttgcag aaggcgatgg ggaatgggcc tcctctaaaa ctgacattat ctaaatcacg
      721 tttttgaca
//
LOCUS       KCLJ01003440             593 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 383425cal ultra-conserved element locus
            uce-7456, sequence.
ACCESSION   KCLJ01003440
VERSION     KCLJ01003440.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 593)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 593)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..593
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="383425cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>593
                     /note="ultra-conserved element locus uce-7456"
BASE COUNT          185 a          116 c          128 g          164 t
ORIGIN      
        1 aaaaaacagc aactgcttta gctgagctgg aaagagaggt tgtgcatgca gtcaaagcca
       61 taaatgctag ccttggtctg aaaaaaggta attgtgctgc gaaggctgac aggtctgaca
      121 gaaagtgtct tcattgagaa attgcatttt gaagttcttc ccgttccttc agaaataaat
      181 ggactaaagc aacagggcta gctctgacag gaagcgggga ttcgggactt caaatacaaa
      241 cattatgaaa aacaagcaac atctgcaaac agtaagtact tatttatatt ttatggagtg
      301 tgtgcttggg attttgacag tttttaaaca gagcctatat taggcccata caaaggcgag
      361 aatgtccttt tttaaaaata cattatgctg ctgaaaagca gtctaaatct gcagtccaag
      421 cctcaggtga gctctgaccc ctcctaacct ggtctaacaa aatacacatg tggtatttgc
      481 aatagaacag tttactgcta ctttctcaag gtcaggacaa gacagacact tgagggttag
      541 tattcagcaa gcttttccct cagctgccag agtggctttg aacttttccc ttt
//
LOCUS       KCLJ01003441             500 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 383535cal ultra-conserved element locus
            uce-3157, sequence.
ACCESSION   KCLJ01003441
VERSION     KCLJ01003441.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 500)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 500)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..500
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="383535cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>500
                     /note="ultra-conserved element locus uce-3157"
BASE COUNT          157 a           92 c           96 g          155 t
ORIGIN      
        1 tttcttgact tccaagatct tccaaggtcc ttcacaaatg aatgaaaaaa aagtctttgt
       61 atgtagaatc tgctgggtgc taatttgaca tggcaatgag atgaaagttg gattcatgct
      121 agtttcaaca tcagaggatt ggaatgcagc ctacttagca tagaagtcaa acaattcact
      181 ggcaatagat tgctttccac ttctagatct gctaaataaa tagaaaacta attaacagtg
      241 tagtatggca gatgtagcag gctagaattt cattagagca ctggctgaga actgaaagaa
      301 tcacaaagtc gttgtatgtc ctggagtgta atgattcttt cttaccgtct tttccatggg
      361 acagaaaaga tactgttttt gtgccccctg cataagaatt tcctgaataa gaatcaaagt
      421 ataagccctt gaaataccat ttcccataaa atagctttgg ttctaacagc agcatcacgt
      481 ttctttgccc tgtgcatttt
//
LOCUS       KCLJ01003442             603 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 383646cal ultra-conserved element locus
            uce-6548, sequence.
ACCESSION   KCLJ01003442
VERSION     KCLJ01003442.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 603)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 603)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..603
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="383646cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>603
                     /note="ultra-conserved element locus uce-6548"
BASE COUNT          181 a           94 c          109 g          219 t
ORIGIN      
        1 aatcttggcc tgtatttgct ttaaagtgga agaatggctg tgatttgctc aacatgggaa
       61 gttttgcagc atggttaaaa tcaagtctag attaataatt aaaaaatgat tattgtaact
      121 gaaggggagg gctgaatcat gggaagtgca gttccatgaa gaggtgcagg aagatggcca
      181 ctgtttcctt ttttttgtat tctactgctt tgaattgttt tctgtttctt cattgcattt
      241 gcatccattt attccagcag gattctcatt tgcacccatt ctaatagtgc tgctgatctc
      301 tacataaagg attatttaca tccatatgta gaagcaggca atccccaggc aagacctctc
      361 aggtattttt ttaaggctta ttatatatct atgaaatact attcttaaga aaaggtgtca
      421 ccagcagtgc gcctaaaagg aatatgaaat actgtttttt ggtcatttgt taaataaaaa
      481 taaagacatc cttttttaag cttttattat tctgttgata aatgtgtctt tcctaacttt
      541 tgatacactc ctctaatagc tactatgata aaataaaatg gactgtattt taatttctga
      601 aaa
//
LOCUS       KCLJ01003443             495 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 383754cal ultra-conserved element locus
            uce-4820, sequence.
ACCESSION   KCLJ01003443
VERSION     KCLJ01003443.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 495)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 495)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..495
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="383754cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>495
                     /note="ultra-conserved element locus uce-4820"
BASE COUNT          130 a          126 c          104 g          135 t
ORIGIN      
        1 ggaaattaag attaaaatca tgaaccaata gtcttttttc aaatggagtt gcaataattt
       61 ccagccagct atgcctgttg tgtatcatct gtatgagaca gatcacacga gaagctacgc
      121 aacaggctcg catccctgtg agcttacctg gcttgtatgt tattcctggg gggaagagga
      181 atccctgctg ggctgcagca gccgctgcca gtgtccgctg gtcgtgtgga aaaattggga
      241 tcatgagcgg aggcatgtga ccctgaacct gctaaacaga agagagcctc tgatcagaaa
      301 tagcacaaat ttgtcttgac aggtatttct ccagcactga tagtgttctt gcgttcacac
      361 agtcccccag aaccttcccc ttaatgcaat ccctgccagc ttcacattat cacatcaaag
      421 tcctcacaaa cattgttttc cctcaaaagg tgtaacagtc tcgtcgaact gcccctactt
      481 cttccttctc tatta
//
LOCUS       KCLJ01003444             648 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 383861cal ultra-conserved element locus
            uce-1545, sequence.
ACCESSION   KCLJ01003444
VERSION     KCLJ01003444.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 648)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 648)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..648
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="383861cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>648
                     /note="ultra-conserved element locus uce-1545"
BASE COUNT          163 a          138 c          132 g          215 t
ORIGIN      
        1 aaaattcctc actgttgtca agtgctcgca aagtgttaac acggttcatt cattttcagc
       61 tgcaatacca tgctgaaaac atacttttgc tggtctgcag ttgattgatg tacattactc
      121 atatcaggct aatggcactt tattttccaa cagtagcaag taatgagtga ccttgagtgc
      181 atattgtttt gctgagaggt tttgttgctc cgtgttctct acgagcaccc ccaaggaaac
      241 gagggccccg tgttggtgtt tttcagcaaa cctcatttct ttcatggctt tctgtaaaag
      301 aatttgatac agggatagaa gctaacctaa gtgagtaaat gaaatattga tccacattac
      361 tctggccttg ccttcacctt gtcccagggc tgtgagttac tgacttttcc gttttggctg
      421 taataggaat tattacaaca ggcctgtgca agtaattact tggcatggca aaaaggaggg
      481 tccatcatat atttctgtag agacgttcct ttccatcagg ccagcagtct gcttttttgg
      541 ccctgtcttt cctactcttg attcaattcc tttaaccgtc attaatcaag ttccttgtca
      601 gcagaagttt atcaaaagta ttaagtgagc aaggttgcat ggcctcct
//
LOCUS       KCLJ01003445             342 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 383974cal ultra-conserved element locus
            uce-4309, sequence.
ACCESSION   KCLJ01003445
VERSION     KCLJ01003445.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 342)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 342)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..342
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="383974cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>342
                     /note="ultra-conserved element locus uce-4309"
BASE COUNT          101 a           81 c           79 g           81 t
ORIGIN      
        1 ttgcaaggtc tacattctcc agaaagcaca tgaatttggg gttgaggttg gaataggaga
       61 cagttcagac ctggtttaat cctgagaaag atgggtcctg agaagtacta acagtcatgc
      121 ttcttttcct cttccccact ggagattcta aacactgaac aaacaataga gggtggcagt
      181 gcatcaaaca gtcttgctta cattgcaaca ttggccggcg cagacaggca acaccgaggc
      241 gttcgagaaa gaacagggta gccaaatgcc atccttcttc caccaagcac tatctttcca
      301 tctccaagga gaaaatttga cagatgaact gtgagccgct cc
//
LOCUS       KCLJ01003446             558 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 384078cal ultra-conserved element locus
            uce-4618, sequence.
ACCESSION   KCLJ01003446
VERSION     KCLJ01003446.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 558)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 558)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..558
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="384078cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>558
                     /note="ultra-conserved element locus uce-4618"
BASE COUNT          115 a          153 c          171 g          119 t
ORIGIN      
        1 tcgccccttg gtgagttacc ttggccgtta gttttaggtc gggacctcag aactgtagca
       61 tccctagaaa tgcagctccg ttcagaactg gtggaaatct ggcagtgtcc cctcttctcg
      121 gggcagtgac tcctgggcgt gtccagtaca ggtggggatg tgggagggct gcgctgggcg
      181 aagagcattg gcactaggcc ctgactaaga caagtgcccc agaagaagtg aatatgtcta
      241 ttgaccgatt gtaaaggtga gagaggatct ccaaagccca ttgtcactgc tgccatctga
      301 aagacagtaa agacagagtt cagtctgttg gagctgagca tgtttgtaca aactcaagca
      361 gagcggcggc gcaggggcac ctgcgaggcc tctccttcct cggccctcac tccaggagtg
      421 tccggcgcca ggaccctgcc gagtccggtc ccaccaggcc agggtggggt tgtgctgctg
      481 ccgctggggt gggatcccct ctgcaaccac tgtccttggt tttaaaagga gcccctagag
      541 cagatccggc acagcccc
//
LOCUS       KCLJ01003447             640 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 384190cal ultra-conserved element locus
            uce-7063, sequence.
ACCESSION   KCLJ01003447
VERSION     KCLJ01003447.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 640)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 640)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..640
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="384190cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>640
                     /note="ultra-conserved element locus uce-7063"
BASE COUNT          179 a          122 c          145 g          194 t
ORIGIN      
        1 tagctgtgga agccacagaa cttttaggga cttagcttca ttttttttct ttaaccctct
       61 ttctttgtac cctggaggct gtgaagcagg gagaagagaa agcaagcaag gagaccgaca
      121 gacaagtcat gcttgtttcc agaccctcaa caacagaact gagaggcaga aaggagccag
      181 ttgtaattca taccgagttg taggctttgt gtgatgaaag cgacagagcg ctgcctggga
      241 gattgctttg ctgcactcca cgaagcagat ttgaaactgt cgtggaccac tttagatgag
      301 agttggatta tggaatgacc tgctatgtct gtgtcatatt gttctgcaca gggtgcatta
      361 tactctgcta actaggtgtt cagtaccaaa taagagaggt atcctagatg tgatctgtca
      421 gctgtgtctc atatttttat attggttaaa atataaaact gaaacgggga tgaaagagga
      481 cagagcagtt ggatgccttg tatatttaca gtaaatctca cactgagttt tgtttaatta
      541 ctttgagagc tatagcatta cctataatta cccccctaaa aatttgtcta tgcatgtatg
      601 tgcctgtaac ccataccact tcttttcttt ccttaaggac
//
LOCUS       KCLJ01003448             857 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 384298cal ultra-conserved element locus
            uce-4837, sequence.
ACCESSION   KCLJ01003448
VERSION     KCLJ01003448.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 857)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 857)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..857
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="384298cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>857
                     /note="ultra-conserved element locus uce-4837"
BASE COUNT          276 a          157 c          170 g          254 t
ORIGIN      
        1 gaggctctga agagttccac ggtagtatgg ctttttaaca tcctgctcag tagttaaagg
       61 gtattcagcc tgatctgctt ttgttgatag ctgatattat ttgacatttt aacaaggttc
      121 tgtatttgca gaagcatctt atggcaccac tttcaacatc agagtctatc acaaaaaaca
      181 tttcaactgt tttgcaaaca aactttcttc cagttaataa ttaaacagag gaacagcttg
      241 cggtatatgc ttggaactaa ttttactata tatagttgga aatgacaaga gcacatgaag
      301 atgtgactga agcctggtag catttaaata ctcagtactt cctctgttac cttgactagt
      361 gtaaagttgg ttcccaaggt aaaaactaag tggtctgctg gcatatggta taacctccat
      421 ttgagcgcta aaagctggat actgtttttg tgaaacagat gttgttgagt gcagcaatgc
      481 acaactgact ctatctaaca gctgggaatc cttcgtgacc catatagcta gaaataaaca
      541 tggtcctatg cttggcaaaa gtgtaaggaa gcaaattttc atttgttaag ggcttatcaa
      601 aatgaagaat aaatgttttt agccataaac tgattttatt cacaagagta atctttccag
      661 cagcttatgc gatggcctca taatattaca ggcacccttt gccagatgaa ggctgcagtt
      721 gcactgacat atagtgcaga tggaaaataa acatctgcct caatcaagag agaagaccaa
      781 agacaaggtt gacgaatatt atctggcatg actatctttg caggaaagca tataaatgct
      841 acaggaccaa aaccact
//
LOCUS       KCLJ01003449             789 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 384408cal ultra-conserved element locus
            uce-1281, sequence.
ACCESSION   KCLJ01003449
VERSION     KCLJ01003449.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 789)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 789)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..789
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="384408cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>789
                     /note="ultra-conserved element locus uce-1281"
BASE COUNT          233 a          161 c          121 g          274 t
ORIGIN      
        1 tgccattaaa ttttggtctt ttaaatatta gttttaaata ttcatttaat tagagaccac
       61 tgagcactga gattctgttc tggcacaagg ttgtctcaag gagatgcatg gaaaatgctc
      121 tgagagtgca tcagctgaga attttgactc gtaaaaagta ttccagttcc ctcattgcca
      181 gatataattt taatatacta tatagagcag tggtgtattg ctaggaattt aacaatagct
      241 ggaataaata atgtcgcctg gggcaacatc tgccacttat gcattaattc tgcccctgtt
      301 tgaacactct acaacatatg cacttctctt ttgtctgtta tcctagagtt gtgttattcc
      361 caaatattga catcatctac ttttatcagc actaactgct ctgaagcttc ctagtctcat
      421 gctcagctct atttctttct attgattatc ttcctcactc cagcaggtag ctagccagcg
      481 aggctgtcct gagaaatagc ttccaatgac tttatacgca caatttacac ggaattgttt
      541 aaagaagata ttagcctcaa tacaaatcag tgaacctcat ttagtcaata ctgcacaatt
      601 cagctgttgg caccctgtca catgttagtc tttaaagtca actaccatac ccaatctgca
      661 cattagccat agtatttagt ttcatattaa aatgaggcta gtttttcact tttctttttg
      721 aaatctattc aatatatttt ctacatcacc tcattgaacc atatgatagc aatataattc
      781 taagtataa
//
LOCUS       KCLJ01003450             446 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 384522cal ultra-conserved element locus
            uce-6226, sequence.
ACCESSION   KCLJ01003450
VERSION     KCLJ01003450.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 446)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 446)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..446
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="384522cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>446
                     /note="ultra-conserved element locus uce-6226"
BASE COUNT          166 a           93 c           81 g          106 t
ORIGIN      
        1 cttcccaggt atatttgctg cctgaaatat gaactgagga ggaaactcaa gctggcatat
       61 tagcaaaagc agaagacacc agtttcctcc aagcacagct cagggaacag ttatgcataa
      121 aaatctctct gatacaaaat ccagtgcagg ccaatggcac acaagccatc ccatcccatg
      181 gtgtctggac ataaaaaaat gaatatgaaa tgactacgat gtgtctgtat atgtagcata
      241 gcacagcagt gactgcacag cactttctat attcctactg tgtaccaggc aaagattttt
      301 cagttcatgc atcattcaca acagggattt cacaaagcca gtacatatcc tttacacaaa
      361 gaagaaataa aaaaattctg aaagtatatc tgctggatga gtagtacaat acacaaagct
      421 tagcaagaag caaaataaat aagtaa
//
LOCUS       KCLJ01003451             522 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 384634cal ultra-conserved element locus
            uce-3223, sequence.
ACCESSION   KCLJ01003451
VERSION     KCLJ01003451.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 522)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 522)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..522
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="384634cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>522
                     /note="ultra-conserved element locus uce-3223"
BASE COUNT          189 a          105 c           74 g          154 t
ORIGIN      
        1 agatgctgca aaaatatgtg aaccagttat ccgcatacag aagcacatga aaagatacta
       61 cagagtggca cgattctatc cgggtgcctc tgctataaaa agcatttgta ttacccttac
      121 ttctctgaat aaattcaaat gacagcccca tttcatttct tcattcagtc tggaggccag
      181 atggcattag aatcatttac ttcaccttgt tgtgcttaat tactacaatc aacacactat
      241 tttccaaatt aatcataaca aagtaatttc attagtaaca cagcaggctg ttgaattatt
      301 agcatcataa cagtttgcaa acaattaaac tttatttgaa ccttaaaaat ttgcagagta
      361 gaacattatt ataagatcta atggcagtac catacaaatc cagaacacag caaataatca
      421 agtaaaacgc atgtgagagt taaaatctgc gctctcacca ttcacaagtg aacaaagaaa
      481 attagcatct tctaccgtat taactgagat tttcttatcc aa
//
LOCUS       KCLJ01003452             635 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 384744cal ultra-conserved element locus
            uce-6214, sequence.
ACCESSION   KCLJ01003452
VERSION     KCLJ01003452.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 635)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 635)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..635
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="384744cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>635
                     /note="ultra-conserved element locus uce-6214"
BASE COUNT          187 a          112 c          141 g          195 t
ORIGIN      
        1 acaatcagag ggcagctgta cctgtaggca gggatagcac caaatgctgg catgtctatc
       61 catgcagcta aaaagaagca accacagtgg aaatgcacct actgtatgtg aattcttttt
      121 ttctatcagt ctaaccttct gtgttgatac atgaacgctg gtacccactt agagggatgc
      181 cagatgatca gtgcagaatg aaggtcccag gagaaagact cacgtggttt tctctgcccc
      241 gtgacgtcac tagcagatgg catgggtacc agctctggca gttggcatca atgtcacttt
      301 ttagagatca atgagatagt gcagatatac acagatctag actccagcag acgatgcgac
      361 attcagactg aaaagatttg gaaggaaaac tgattgttga atgaaataaa aagctaaggt
      421 aatacaaata aagatatatt tcaattggtg ttgggtgtgc atgcaagtgt ttaaagatac
      481 agtatcattg tcttgttttt tgtgtatgct atttgctgtc tagtaactcc taccatttta
      541 ttcttctaat gcaattacaa actttcattg cttttatgta atactgcaaa tgtgtagtac
      601 tgatagagtt agtctttgac tggggttttt gttta
//
LOCUS       KCLJ01003453             731 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 384850cal ultra-conserved element locus
            uce-1192, sequence.
ACCESSION   KCLJ01003453
VERSION     KCLJ01003453.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 731)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 731)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..731
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="384850cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>731
                     /note="ultra-conserved element locus uce-1192"
BASE COUNT          211 a          168 c          127 g          225 t
ORIGIN      
        1 cccttgaaaa cttaatggtt ctgtagtata aacatcttta ttgcagaatg gtctaaaact
       61 taattacctc ctacctaata tcagcaggta gctgaaaaat ttctacttat cacagagaac
      121 acaatttcat tattttacca caactaaata aaatgcaaaa tgtaatcact agtatcttct
      181 gctcccatag cctgtgcttt catcactggg tttttgtttg tttgtttata aaattaatca
      241 cagctagcag ggtagaaatc actttgagcc tcatgaatga catccaagag atgggaaagg
      301 attagttctc agttgctgcc agttatagcg ccaggtggct ttttctgcag cgaaggtgtt
      361 accgataatc ccattacatt ggtactaaat cttgcagaca tcaaaattat caccaaggtt
      421 ccttttcatc ccatcctttc caaatgactg gaagtcgctt cacctgaaag aagtcaaatc
      481 cacatgcagc tgctgtttta gcagccagcg gactccctga gaatgccaat tgtgatccaa
      541 tttcgccgtg ctggtggccc cctattccct gtccaataat acatctgtta aaaaatccta
      601 cagctacaaa tcaagtttaa tcctaccagg gacctcatgt tggtcttgtc ttccaaaaag
      661 gcagcaggtt ttgctgtcta tctctgccag tgtctgggga atactcttta aatcccagct
      721 ctacttagaa g
//
LOCUS       KCLJ01003454             476 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 384955cal ultra-conserved element locus
            uce-1374, sequence.
ACCESSION   KCLJ01003454
VERSION     KCLJ01003454.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 476)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 476)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..476
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="384955cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>476
                     /note="ultra-conserved element locus uce-1374"
BASE COUNT          148 a           74 c           97 g          157 t
ORIGIN      
        1 ttaagaaata tgaaaaaaat atgagttgct ttaaaataat actcctctgt gctttaaaat
       61 gttctttagg tgctctggag ctggagatag ccatgtcctt gtgatatttc agtgacaatt
      121 tctattttaa gtgtcaaaaa caactctgct atctggagca agtagtgtag tattctcttc
      181 ttttaatatt ctaatcgtga agtgtaaagt gaaatggttg cacagtgtaa tggtggtaaa
      241 gaagctgagt gtcaatgaga cgggaaaggt gacagacacg gaatgagtcc ccaaggtgct
      301 ctccaagtgc attggataaa gattcccctg ggaaattttt ctcattagtt ctcagacaca
      361 gttcagtaat tcaatagcac caggttacca ttagtcacaa gaccaaaata tgttactttc
      421 catgctttag ctctttgatt tgtatatgtc attttatgag agaaaattat gagatt
//
LOCUS       KCLJ01003455             643 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 385063cal ultra-conserved element locus
            uce-545, sequence.
ACCESSION   KCLJ01003455
VERSION     KCLJ01003455.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 643)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 643)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..643
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="385063cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>643
                     /note="ultra-conserved element locus uce-545"
BASE COUNT          224 a          117 c          104 g          198 t
ORIGIN      
        1 ccccattccc gtggtgagaa aggtgatggt atgtttatca cacagccaag aaataaatgg
       61 gagccattac aaaggtgtat aattcagcaa ttacagttat ttgttttttc tgacaccccc
      121 tgcaaacagt tatcgcttca gtcaaacata atcaaattat ttttcctggt actgtacatt
      181 aacagggcaa ataaaaggga aaatagtgca gtcccttgta ataaagaaaa cagcagcaaa
      241 ctattaatgc tctttgaaaa gagtagtttt aacaaagtaa gcaagaatca ttttctttgg
      301 ttgagtgttg attccccagt gtgctctcag taagtaatta gaatggccca gtgaatgtca
      361 gcatcagctt gtttattctc attattttat cattttaaaa accctctagg tgatgagaca
      421 tgcagtatag aacataatta ccattattag catactaatt ggacacaaaa ataggccaac
      481 tacaaggtag ccaactgaat aatttcacat taatcaaaca ccatagtgaa taagcctatt
      541 gttaaattga cagctacaat aattggcaat atttcgctgc gcaatataag aaattccttg
      601 taatatctct gccacattat ataatttagt aatttcccac att
//
LOCUS       KCLJ01003456             481 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 385172cal ultra-conserved element locus
            uce-7164, sequence.
ACCESSION   KCLJ01003456
VERSION     KCLJ01003456.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 481)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 481)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..481
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="385172cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>481
                     /note="ultra-conserved element locus uce-7164"
BASE COUNT          156 a           84 c          125 g          116 t
ORIGIN      
        1 atgcaatgag aaatatgtta atttacttag cacggcaagg cacatttggt ggattagcta
       61 aaataacaga ggggaaaagc tggggtaagc aggctgaagc cctgtgtgtg gccaaggcag
      121 cgggaagcaa ggcagagaga aagagaatga acccaacaac acaacagtgg aacaggcagc
      181 tggcctgaga tgctaattca gcgctttaac aaatcaatgc cacttgaaaa gtacaatgcg
      241 agccctcact gggtagatgt caggggactg agaaaatgca ttctcaagta tttcacatta
      301 agagggaata atgtgttaat ttataactct tcaccctata cacttggatt atccatctgt
      361 gtcagtgatt tgacttctta aatttatcaa aaacatgcgc aaagggaggc atcttctgct
      421 aaagcattgg gaaatagcga ttcaggaaca gtattttgtt gttgggtgga cggctggagg
      481 g
//
LOCUS       KCLJ01003457             478 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 385279cal ultra-conserved element locus
            uce-3940, sequence.
ACCESSION   KCLJ01003457
VERSION     KCLJ01003457.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 478)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 478)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..478
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="385279cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>478
                     /note="ultra-conserved element locus uce-3940"
BASE COUNT          145 a          114 c          106 g          113 t
ORIGIN      
        1 aaagaaaggg agagagacat tttctttcac acaagccctc agaattacag ttcatgaact
       61 attcagtaaa ctgaccggca tgaacctccc ttcaacggcc taatctaagg ggtggatcta
      121 tgtgttttgt tgcttgtcaa aaacaatcac tgctcggccc attacattta cagcacgtcg
      181 tcctttaatt ggtgtaacac actgagggct gaaaggaaga aagtcctaca aaagcccccg
      241 agtgaatgaa ccctgactca cacaaaaata ctcttcagaa gttcagagct gggcactaac
      301 aagggaggta gagagttagt ttgaaaaggg gttaagttca gaaatgtgcc accttgaaga
      361 ccctcccatc aaagccatga tagcattgac aagatgcagg gaaaaaagtt aatattccgg
      421 cctttcgggt ttgaagggca ctgaaggctc ctcccggctc tccttcccgg ccttaccc
//
LOCUS       KCLJ01003458             454 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 385384cal ultra-conserved element locus
            uce-6406, sequence.
ACCESSION   KCLJ01003458
VERSION     KCLJ01003458.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 454)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 454)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..454
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="385384cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>454
                     /note="ultra-conserved element locus uce-6406"
BASE COUNT          168 a           87 c           80 g          119 t
ORIGIN      
        1 tattgcttcc tacatcaata aaaagtgtac tttacacaaa gaaagaaaac ctgctgaaga
       61 aaatgctagc taaagttact aaacattcta acaattatca taaaaatgct agaaaagaaa
      121 atatagatat gttaagcaat cctaaaatct tcttaaaccg cacattgtgc ttgcctacag
      181 agaattttta agatgaaaaa tagaccttga gggtcttaga caagcctgag gcaatataaa
      241 gaaaaaggtc aaacactctg ctaaaaagga ccgttatctt cagaacaaca acttatcagc
      301 cagcttgcag ccctgcttat ttacagttat tggtcccaga ggaagtgcac ttcagcgcag
      361 ggcgcgatta ctttgtaatg agtttgccag aaatggtaaa ggaaactaat ttgtaacaat
      421 gtgctgttcc cggcacatga actttctcag acac
//
LOCUS       KCLJ01003459             992 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 385489cal ultra-conserved element locus
            uce-864, sequence.
ACCESSION   KCLJ01003459
VERSION     KCLJ01003459.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 992)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 992)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..992
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="385489cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>992
                     /note="ultra-conserved element locus uce-864"
BASE COUNT          348 a          180 c          187 g          277 t
ORIGIN      
        1 ttgaagtggt agcaaactga gtttgccctt tgctttaacg tacctaggaa tcctgatcta
       61 tattcctgat tgctattgaa ttttctagat ttcattataa aatcaataac cgttgcacat
      121 ggtaaaatag tttacaagaa ctgcaacata ttgtggactt ctgaaaacat actgagctca
      181 ctgaagccac ccaggcagcc aattaggaga aaacatctat taaggaaaaa cagggcagtc
      241 ccattgactg ctattgattt tctcagccct gtgaaaagac aatcaattag ataaagaagg
      301 ctaatgttac agctgcaatt taataacccc taaagaaagg aggagggcta ttgattcctg
      361 acatggaatg cagagcttat tgaaatatac tgaacttcac ctgtcttata atcaggcctc
      421 gaggaaagaa ctcaatgtaa cttgtggcat agaatctcaa ctattaaact ggcttggtga
      481 tgtcagacct aagagatgca aatgaaacaa aagtttagag gaaacacaag tccagggttg
      541 aatactaaat cacaggagct attgagagac actgttttgg tgaaggttgt ttctctcata
      601 cagaaagcac cagagtacca cctgtcattt tcaaaagcaa agtcagtttt gccaaccacc
      661 cgtgaatgac aaataaagct ttatatgaaa cacaaggaca tattatgtgc tattgtgtgt
      721 tctgctaagt gctaatttat ctggcttgtt ctcttcagca aacacacgca cagacacatg
      781 aaataatcca tctaattatg tagctattta ggagaaaaac aaagcaaggt gtttttgtct
      841 gaaacagaag gtacatgata caacaaaggt ttcatcaaaa cctaacacag ttaatgaaaa
      901 taaatgaagt ggggtagctg taacaatttt cgaacaaata aacattttcc agttttatat
      961 ttagggtaga cccagctgcc tttcataaat ag
//
LOCUS       KCLJ01003460             601 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 385588cal ultra-conserved element locus
            uce-2259, sequence.
ACCESSION   KCLJ01003460
VERSION     KCLJ01003460.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 601)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 601)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..601
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="385588cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>601
                     /note="ultra-conserved element locus uce-2259"
BASE COUNT          190 a          106 c          119 g          186 t
ORIGIN      
        1 aatgctagta aaatgtgtta gttacaaaga caagatctga gaggaatgga gatgtgaaca
       61 ttttttataa tttatataaa aagcagaatg aaacagaagg gtgcagatca ttatgtttct
      121 tatcttttaa tgtggaatga agtcatgtta ttaaccccaa ataatgttct gaaaggctat
      181 cctagcagaa tgtacatcag ctgttagatt acttcattcc tccacagcag ttgttcatct
      241 gaaaatagct ttcaaatgaa aagaggcaac tacaaaagga ttagttacca taggcagcat
      301 gatactccca caagattatt tatggcaaaa cacccagaga caaagctgta agagagttaa
      361 actctatgta ttagggagtg ctagaggaca ttgcatatgc agtaagctgg gttcagtgct
      421 ataccatttc tgtgtatttc atccataatg gctgatgctt gctctttcct ctctttggcc
      481 agggcagcat ctgataacat tttctgatac gattttcctt gctgcttttt atattgttga
      541 gccagcacac acagttggcc aactttcatt tccaatagcc tgtagaatgg ctgaacagtg
      601 a
//
LOCUS       KCLJ01003461             543 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 385700cal ultra-conserved element locus
            uce-7055, sequence.
ACCESSION   KCLJ01003461
VERSION     KCLJ01003461.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 543)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 543)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..543
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="385700cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>543
                     /note="ultra-conserved element locus uce-7055"
BASE COUNT          166 a          145 c          139 g           93 t
ORIGIN      
        1 ggacactcag ccaggactgc ctcacagtgc acagccatgg gggtctggag cacacagctg
       61 atgggacagg aacaccagga atgcacacgg gaactaggga gagaaatcat caccgaggcc
      121 acgccagctt gggccagagg aaccggcaag cagccaggac aggaaagcca ccattccatt
      181 cccagcgttc acagacactc ctactgccag caagtacctt aatgaacgtt tccatattgc
      241 cgttaaagag tttatgatta tagactgaga gaggcctagg tctcctcatt ttctgtggct
      301 tagggggaag acaggggggc ctgggagaaa atggaacaaa ataaatcaac aaaacaccaa
      361 atgcaaagac agggtgagat ctcacaggtt gtaactgaga ataaacagaa gagtccctct
      421 gtgaggattt gatgtgtcac accctgcagc cactgacact ggtgtgtccc acacggacac
      481 cactccagca ggaaaccagc agttaacacc tgcctcactc cctcagcctg aacaggcacc
      541 aag
//
LOCUS       KCLJ01003462             881 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 385805cal ultra-conserved element locus
            uce-591, sequence.
ACCESSION   KCLJ01003462
VERSION     KCLJ01003462.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 881)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 881)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..881
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="385805cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>881
                     /note="ultra-conserved element locus uce-591"
BASE COUNT          306 a          156 c          209 g          210 t
ORIGIN      
        1 agattactaa tggggcctcc aagaaaacaa atacaaatgc aagacaaaag acaaaacaaa
       61 tgagaagtga aggaaagcga accggaatta gcacttcatc agaaataatt atgaacaggc
      121 aatgttgagg ggagcaaggt gggccacaaa gacagagact attttgaacc aatctgattt
      181 acaatgcagc aaatatgcaa cacttgaagc tgtgctcctt ccattgaaat aaaattagtg
      241 gattgtttgg gtgggcaact cacgtaaaag ttcagtgaca aaaagactta atggggaaaa
      301 taagacagaa aacttgaaaa aaaacaatac accgtctata aatttaatta tatcaaaggc
      361 aggtaataaa atacatttct ctctttctat tcaggcagtg aggcataaac tgttgggaca
      421 taccgctcgg ggccactgct gtctgggact gaaacactgg cattgtactg cattggtcat
      481 tggcgttcgt ggatgttggc attgggcatg ggtattcaat cggaagttgt caagtatggt
      541 acccgtttgg caacgagcac atttttgggc atagccaacc agggttttca catgggcgtt
      601 caggggcgga tgggccaacg tcatggtggg caacgcaggg gcaagtcgat ccagtacatg
      661 ggcaacggag atatatggcc aaaaaaacaa ggagagggaa aagggggaaa agcaataaat
      721 tttaatttaa tacaaactat actcattact ctcaattaat gaaacaagct taagttgttc
      781 tgaaggctaa cacaataacg gattgctaca ccgactgtgg cctaacagta tggactttag
      841 tcacttgatc tgactaaact acaatgatgt ttcagtagca g
//
LOCUS       KCLJ01003463             430 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 385898cal ultra-conserved element locus
            uce-3183, sequence.
ACCESSION   KCLJ01003463
VERSION     KCLJ01003463.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 430)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 430)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..430
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="385898cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>430
                     /note="ultra-conserved element locus uce-3183"
BASE COUNT          118 a           81 c           81 g          150 t
ORIGIN      
        1 ttaatttgct gttaaaagag gagagagtga actgcaatta tgacaaacca acaatttcta
       61 ttcagacctt taagtgacat ttttagatgt taaaagtaca aactttacca cactcttttt
      121 ttggcctaac attgaggcct taaagcttga ggcttctgtg cctgatggaa ttcttgtaac
      181 atacacttgt gtatcatata aagataccac cctgtttctc ttatgtattc ttactctagt
      241 tgtttattaa gaatgacgag cacgtctttt caacatgcca ttgaacaatg tgtctttatt
      301 tggggaagag tgagctgtga gggtgggggg gtcattatac aaagatcagt atgcaaactg
      361 gttgttttca tccctgttca tgctttccag ctcaactctg ctggatttct ttcaccccta
      421 caacttatga
//
LOCUS       KCLJ01003464             674 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 386004cal ultra-conserved element locus
            uce-6774, sequence.
ACCESSION   KCLJ01003464
VERSION     KCLJ01003464.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 674)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 674)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..674
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="386004cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>674
                     /note="ultra-conserved element locus uce-6774"
BASE COUNT          208 a          117 c          116 g          233 t
ORIGIN      
        1 gtaactgtag gagacctcag ctgtgttttt caccttttga tcaaaagccc agtgcaacag
       61 agataaagaa cttgcacgac atttttgaaa taggagcaaa acatgtggta ttgcctggca
      121 atcttgaaaa gaaatatgta agattaaaac aagcaagtcc aagtgtgttt tttcagtaca
      181 taatacatat atacttaatt taatgcagca gctttggttg gtctatttct cattcttttt
      241 ttaaagcata taaattccaa ccatgttttg tgtgaagggt ctcagtgcat actgacattg
      301 tgagtgtcag ctccagatca ctttaatcag agagtggata tgcatgataa aacggataag
      361 ggactttaat caaaaaatcc gctggtctgg aaacgtgacg cactccgcca aacacacttc
      421 atcccacttt tcttgtgcca ctgccaagat ttttatttca tgaatatgca ttggacatga
      481 tattacatta aaatgtgaca ttgttgtgta gtggtaggga tttagaatta gaataaataa
      541 ataaatactt ctgtaaagtt tttgtaattg agcattagta tcatgttgtg attttacata
      601 tatttattca cctaccccct ccttctctcc aaatttattt ttgaattgca tattgcattc
      661 attcctttct actt
//
LOCUS       KCLJ01003465             632 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 386113cal ultra-conserved element locus
            uce-2060, sequence.
ACCESSION   KCLJ01003465
VERSION     KCLJ01003465.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 632)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 632)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..632
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="386113cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>632
                     /note="ultra-conserved element locus uce-2060"
BASE COUNT          169 a          122 c          141 g          200 t
ORIGIN      
        1 ggataggggt aggtttggtg ccgttgtttc ctcctctcag gagcacttta atgaagcagt
       61 ttgtccttat taagttgaaa atagaaatgc acctttcccc cattggagac gtaaccggaa
      121 tggcacaagg ctgtggagtt ttattatctt ggtctcagct taaaatacta agaggcgctt
      181 ctttaagaaa gtttaagaga agttctataa accatgtcta tatataatcc cttttgtaag
      241 catctaggaa actgcaggac ggaaaggttg cctgccagac ctcagaaagc aaatactaat
      301 tcagcagtct agtcactctg tcaaacattt agtgtatcag ggttgattgt tccctggtag
      361 gtatagctct ggtatatccg ccaggccttt tgtcatgtta actgcaaccg atcaatggat
      421 tgaggtcagg acttctgatg taggtgcaag cttagaggga aaaaagtctc aaagattcat
      481 tttttctcgt ctggtagcac tccggtcact tattttttct cagttagcct ctgctgctct
      541 aaagtggata ttgatcagtg ctttaatgca aacctgtcaa attaattttg cagagctggg
      601 atatgactgg cctaaaattg cttctgcatc tg
//
LOCUS       KCLJ01003466             578 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 386221cal ultra-conserved element locus
            uce-7888, sequence.
ACCESSION   KCLJ01003466
VERSION     KCLJ01003466.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 578)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 578)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..578
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="386221cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>578
                     /note="ultra-conserved element locus uce-7888"
BASE COUNT          162 a          139 c          125 g          152 t
ORIGIN      
        1 ggggaacgaa agcgcaaaat aaatgtaaac actctcctca cgaaacggtt aaaagcacaa
       61 aattaaaaga taaagccttt aaaagacttt acagtgattg ataagacagt ggtcactcca
      121 gtgcttcctc gcagtccctg ctaattactg gcaggccatt gaaggcagcg ggcacagctg
      181 cgcgggcggg cgcgccgggc catcagtcgc tcccggtatt gattactgag caattccagc
      241 cgatcgggtg ctggcgcttt agagacaatg tgcttccctc agaaaacctg taatgagcag
      301 ttcctataca agactacatt ctgctgacat cagatctctg cactaagata gtacacaggt
      361 caatacatat tggatttcca aaatgctggg gtcttaatgt cagggcctct ctttttctcc
      421 cactcctgcc attagctatt actgggttca cattctttaa tgccatacag gagggggaaa
      481 aatctcctcc attagtctga tttattcttc aaatatgcca tgacaaattg ctttaacacc
      541 agacttatta aattcttgta cactcggagt tgcggggc
//
LOCUS       KCLJ01003467             660 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 386331cal ultra-conserved element locus
            uce-5419, sequence.
ACCESSION   KCLJ01003467
VERSION     KCLJ01003467.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 660)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 660)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..660
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="386331cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>660
                     /note="ultra-conserved element locus uce-5419"
BASE COUNT          186 a          114 c          148 g          212 t
ORIGIN      
        1 aacgtgattt tccatgactt taccttcctt ttctgctgga gcagagcttt ttgtcatgga
       61 caaagagagg gagacatgag agtgggtggg ggtaaggaat tcttccttat gtgttttaac
      121 tcaaattctg ggtagagttt cagctattca acctttctta acacctgtgt gagcatttcc
      181 ctcttgatca tccctcctaa tctctctgta aggttatgtt ctttcagttc tgtttttaaa
      241 gttaaatgac tgaaagtact gaactaaaac ttgctggtga cactgacttt ttaccaccta
      301 aaattggcag tgatcaccag accagaaatg gaaattggca ggtaccactg gatgtacagg
      361 agttcaaggc cacaccggta ccatcatgtg ccagcattga gaggcaatat tagtcctttg
      421 gggattcaag gtaaataaag ggctgggtga aagggaaatg aagagttcag aaatggtagt
      481 agcataaact taatgctttg cagtagtcct aacaatttta tttgttaagg cggagtcttc
      541 ttcacttgac ataaatttga atttcttgtt aatgtttgaa agacaataat gcgtggtgtg
      601 agggaccctt ttaactgtgc tcccaattgc ttcaaaattg tttatggatg agataaaatg
//
LOCUS       KCLJ01003468             564 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 386551cal ultra-conserved element locus
            uce-5996, sequence.
ACCESSION   KCLJ01003468
VERSION     KCLJ01003468.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 564)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 564)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..564
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="386551cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>564
                     /note="ultra-conserved element locus uce-5996"
BASE COUNT          182 a           99 c          143 g          140 t
ORIGIN      
        1 cagtggtccc ctgcttcctg tctccagctg atagtggtgg gatggtggag ggtcagggag
       61 aaggggaggg ggctggcagt gtctgacaag tgaaacagat gatgctgcac accacctatg
      121 taaacagaaa taggcgctgg ggctgatgga gcgcagagat atgaccctgc ccatagagcc
      181 gctgagtcta gactccagat gtgctctcac tgttaccagg ccaattcaga tccaactggt
      241 aaatatttct accagatgac agtgggctca gttacagaaa tgaggacaaa ggacaaaaat
      301 aggcagaaaa gtactgggca ttattgctgc ttagaaaaat attcagcata gttttggaga
      361 tgttaagggg caattattta aacagatcat atacattctt tttaccatgt tcagctgaaa
      421 aagttccaag tcaaactgaa ggctatttag gcaaattagt cacttaaaat gaactgaaac
      481 agaggtctgt aaaggataaa ataaaattta ttttaccata tggacataaa gaaatgaggt
      541 gttgataacc tcgggctggt aaat
//
LOCUS       KCLJ01003469             604 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 386663cal ultra-conserved element locus
            uce-1830, sequence.
ACCESSION   KCLJ01003469
VERSION     KCLJ01003469.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 604)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 604)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..604
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="386663cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>604
                     /note="ultra-conserved element locus uce-1830"
BASE COUNT          200 a          110 c          123 g          171 t
ORIGIN      
        1 accgagtaga tttaattgtg aagtttccat tagggaagga gcaggcagac acacttgcag
       61 aacacgtgca gggtgtgcta catagctaca cagccataaa ttgcccgtgg atcaaagatc
      121 agggcttaaa tctgagctag gctacagtac acagaaaata aacgatggaa ccatcttgct
      181 actgcctgtt tcacttaaag atgataagaa aacattatca cattatttta aggtaaatcc
      241 agcatttcca gagctgattg aggcaagaat tagacagtgt ttaggggatt atgaaaaaca
      301 gcttcctcta caggtcaaca gctaatcaga attctcatga gattttccaa agagccttat
      361 gaataatttc accaaaggca caaaaacggg cacattattt agagagagcc ttttgatgta
      421 ttttctctga ataagcacgg gtattcgagg atttctgcta gttcagagca acagggacca
      481 acttattaaa tgttcctgct gcaatgcctg caagctagct gagattaata tcagcataac
      541 ctgttactta attcattatg gggatacagg ctaatttgat ttgatattat tttaataaag
      601 ttct
//
LOCUS       KCLJ01003470             705 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 386767cal ultra-conserved element locus
            uce-2274, sequence.
ACCESSION   KCLJ01003470
VERSION     KCLJ01003470.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 705)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 705)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..705
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="386767cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>705
                     /note="ultra-conserved element locus uce-2274"
BASE COUNT          221 a          123 c          128 g          233 t
ORIGIN      
        1 ttaataaaag gatatcgccc cctctcttat tgataaagtt atgactgttt aaattcatgt
       61 caatcatatt agaaggaact ctccattctt tgagagaaac aaattatttc cattcttttg
      121 aaatactcaa actgaagagt ttcaaatggg agtaatacaa attacatgct ttaagactag
      181 tcacagtctg tagtaacaat tctgaatttg gaaggaaatg tgaggtatga tatccaatta
      241 ctattcttgc ctcatcccct aattttgggc atatgactac attagtattg ggcaggtata
      301 gaaaatggga aagttaacat ttatgagaga ttaccatcag ggtaatattg ctggttcatg
      361 ccttctggag gaccttgtcc accatgactg tattggtccc cataatagtc ttcctggcct
      421 gagtactgct gtggtgggcc tgaaaaacca caaccagtca atacgtaaat aacttggcct
      481 gctaatttct gattttagta tgagaaatat ttctcaaatg tattccccac ccatactgtt
      541 gcattacagt gtaatctggt ttagttgtaa atgtatctat atacatatat aaacacacgt
      601 ttggctgcac tagactgaga ccaaacttca gttttgagct cattttagga atatgtgtat
      661 aacagactag ggtgttaata aaattattcc ttgttgaaaa ggact
//
LOCUS       KCLJ01003471             568 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 386875cal ultra-conserved element locus
            uce-7709, sequence.
ACCESSION   KCLJ01003471
VERSION     KCLJ01003471.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 568)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 568)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..568
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="386875cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>568
                     /note="ultra-conserved element locus uce-7709"
BASE COUNT          185 a          102 c           84 g          197 t
ORIGIN      
        1 agccatctgc agtttaactt ttgtgaaaat tagatacaca catcagactg atcgattttc
       61 tctctctaaa cagtgaagct tattttaaaa atactgaata tgatacttaa cacactctat
      121 tgacatgact ttaccacatt attcattact aatgaaaaac acgggaattt gctaaagatc
      181 aggttagcca aaaataaaat aacaaccaag acaaaatatt caaagtagtc ttcttacctt
      241 gttcttttat ctgacgaatt tgcttcacag tttctttcaa gattgcacat ttgtcaggtt
      301 taaagttaaa gttgtcaata tcattaaaat ttgcaaaaat cagctctgca agttcttcaa
      361 tgtatttatt ctcttgctca cgattgcgtt tctcagtgct tctcttaggg ctgaaaaatt
      421 ctgtctttaa tgtcagttta cttgccttct ggccagatca gaggtgaaaa tggtttgaca
      481 gtagtttaac aaaatataac tttttctcac actttggaac aaggctagaa aagatgttac
      541 ccagcagtca tgtttttgtt tcaaaaga
//
LOCUS       KCLJ01003472             489 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 386983cal ultra-conserved element locus
            uce-1846, sequence.
ACCESSION   KCLJ01003472
VERSION     KCLJ01003472.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 489)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 489)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..489
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="386983cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>489
                     /note="ultra-conserved element locus uce-1846"
BASE COUNT          158 a           70 c           96 g          165 t
ORIGIN      
        1 taatgcagaa tttctacctt acatgttaat taatgtgtgc aatcaattac tgatgttaca
       61 atatgagaaa gaaactggtg gggaatgggg taataaaaaa tacctataga tttatctgct
      121 tcttttttct atttaaacaa atagtcttca agtctgtgaa tgctgtgttg agacatgctc
      181 tgaataataa gcatcataaa atctaatcag atttataaga ggaattgatt gttgtggcag
      241 gaggagaggg tggaaaataa gctgaaattt aagtgttaat ttttatgcta atccacagtg
      301 gcttcatatg aagcaatttt gttctgtgcc acaaatataa aattgtccct tgcagagaaa
      361 tgtcagcttg ctagacctga aagcagtaat ttattaggta tgtttctatt agtatgtgtc
      421 acagttgtta gcaggctata cacacaatgg tgcttcatac ttatcctcca agtctcagaa
      481 tgtttcagc
//
LOCUS       KCLJ01003473             494 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 387086cal ultra-conserved element locus
            uce-5048, sequence.
ACCESSION   KCLJ01003473
VERSION     KCLJ01003473.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 494)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 494)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..494
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="387086cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>494
                     /note="ultra-conserved element locus uce-5048"
BASE COUNT          177 a           82 c           89 g          146 t
ORIGIN      
        1 agcaaatatt ttagttcacc gcagcaacag gagatctcct gtactactga atgtaaataa
       61 gctcttccat gcttgtcatc ttacactgat agtatcataa gacaagtaat gacagattaa
      121 gacctgccta gcagagggaa aactaaatta caagactttt attaaggcat aaataaacct
      181 attaactgtt atctggaata ccaattagtg gaaggagcac tgacaatttt atttatcaac
      241 attaaacaca attattaatt acagacctga cgaatctagc agtaagcagg acatgttggg
      301 tgtgctgggg ccttaagtcc attatatgag aaggatgatt accaaaatcc tgtggggaaa
      361 tacgtaattg tagctgtaaa attttaattg ccaataaggt aaattatatt ctcttgtctc
      421 agaatataaa tagtatggca ttaaggtacc aagcctcact aattttgaac agcaaatgat
      481 ttagacatct gtag
//
LOCUS       KCLJ01003474             819 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 387197cal ultra-conserved element locus
            uce-2008, sequence.
ACCESSION   KCLJ01003474
VERSION     KCLJ01003474.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 819)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 819)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..819
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="387197cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>819
                     /note="ultra-conserved element locus uce-2008"
BASE COUNT          225 a          151 c          184 g          259 t
ORIGIN      
        1 ttttgcatga aggttatggg cgagttctgc tgcaggccct cgaggatctt tttgggaaga
       61 ggcatcttaa atcgctagtc atacacaaaa tattattgca atgaaaaata gtgaagtgaa
      121 taaacagcag ctcacagtac aggatgcatg atgtatcagg agtcctggtg ttcactgtat
      181 tttgcagttt aatgcacaat aattttttag ttctgtattt gtgtatgctc cactcactga
      241 tctgtattct taggatgtga ggttccatta aaaaataaat aataatggca gcccccgctc
      301 cccccacgtg cactcatttt ctgtaatatg gtaatgatat caccgtagca gtaattacgg
      361 gtcatcttca tttctttcat ctctgctgct tctgatggct tcattccttt gacggagaag
      421 atttggctct gggtgctgtg attattttgt taagcattat tcgaatagac aggagtgaga
      481 gaaattaatc aatccaaatg caattagcat catgtttaac ccagtgatgg acgtctcaag
      541 gtgaaacagc caggggagtt tcagacatta ttattcaatc cagtggctct tatctaaatt
      601 ataatcaaga ggtttttatt ggctttgcag agagaagatg taactctttc cctgctttgg
      661 gggtcaaagg aatcagatct ttggccctag aaaatattgg ctgcagggca ctcctagaat
      721 tgggagagag ttactgtgat atcagggtca ctcgggacaa aatacctgta catcctagta
      781 tctggcataa gtttagtagc tccctggtca ttggcaggg
//
LOCUS       KCLJ01003475             780 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 387306cal ultra-conserved element locus
            uce-6813, sequence.
ACCESSION   KCLJ01003475
VERSION     KCLJ01003475.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 780)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 780)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..780
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="387306cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>780
                     /note="ultra-conserved element locus uce-6813"
BASE COUNT          181 a          180 c          174 g          245 t
ORIGIN      
        1 attgctttgg tcctcttttg aaatgagcac gttacaattc tcccattctc tttataaaat
       61 tggaagtctc aaggtatgtg accagttgga acctgttgca tcttgcagca agtgatttat
      121 gttcacagtt ttgatttgcc tcaatgaaaa gattttcatt catagccccc agctctccag
      181 acggatggaa ttgctgctcc atttaggaaa aggggtgact cgccttgtta ggaaaaagcg
      241 ctgcagcgcc tatatgcctg ctttgtcctc ccttcagggt ggctggcatt cttctctctc
      301 ctctctctcc ctctctctct ttttaacaac gctgaagttg tttattcttt ttggatgaag
      361 tctcagatag gctactgggg atgtgtgctt caattgatgg ggccccctac cccattgtgg
      421 ctgtgtcagg tctaattcat ctcaccgaag cccccttgtt cctgagtgct caatagcgca
      481 agatgaggcg atggaggctg acaatgatgc cacactcttc acttgggggc atccaattac
      541 aggcgagagg ggccccctga ttaatatgct gaaattagtg gcctctgcca caaataattc
      601 cttgttgagt tgcaacaaaa aggcagtcca tgctgcttgt ctggagtggt tatagggaca
      661 gacacaaact ggtcatttaa acttcattat cacttttcca ccttggaaag aatgagggtg
      721 tgactatgaa ttcatgttct tgtttactct gtcaggacgg gctcattaaa gacacatttt
//
LOCUS       KCLJ01003476             668 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 387407cal ultra-conserved element locus
            uce-1424, sequence.
ACCESSION   KCLJ01003476
VERSION     KCLJ01003476.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 668)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 668)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..668
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="387407cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>668
                     /note="ultra-conserved element locus uce-1424"
BASE COUNT          224 a          123 c          106 g          215 t
ORIGIN      
        1 tttttcaata ttgcctaatt gtgataagaa atttagattc ttgaacacat tgaagtatga
       61 ttgtgatatg tctgcaaatc tcaaaaattc ccatgtgaaa agcaaagatt aattgtacag
      121 tatttacacc ttttcattga taactaacac cataaaactg tacaaattgc aatttgtttc
      181 tttttcccac aatccctttg gcttttaagg gatgttcctc aattagttga actgcgtttc
      241 ctcttgcttg ctaagcactt ttggtcaaac aaggaatggc agaggtccac aattagatca
      301 aaagatcaat cctaatgtac cattttctcc tcaccctcct gctttaataa agtggctgca
      361 gttctccagg ggacaactca aaatccgagt actgatattt ctaaattagc tgactctgtg
      421 accttgctag taattgcgtt agtttatcaa tgttcaacac aatttattac tctccaatat
      481 gtaccaaaac gtttatctct caacactaac aatattaaaa acctaaacaa tctgttgaga
      541 aacaaaggac tattcaatat gcataataaa ctggaagaga ctacactgat gggtaagagg
      601 attaatctag gaagtagtca taagtgaagt aaggaaagat gtggtattac attcagggca
      661 cttttaaa
//
LOCUS       KCLJ01003477             390 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 387518cal ultra-conserved element locus
            uce-3473, sequence.
ACCESSION   KCLJ01003477
VERSION     KCLJ01003477.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 390)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 390)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..390
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="387518cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>390
                     /note="ultra-conserved element locus uce-3473"
BASE COUNT          115 a           73 c           75 g          127 t
ORIGIN      
        1 ctcttgatga ctgaagtaca cactctgtgc ggccctatgc tccagccaca ttggtaatag
       61 taacaaagct ttgatgtccc cctcattcaa cagaatgttg tttagttcaa agcaaagaac
      121 agaggcaatt ctttgctttt aaattattag ctccctaagt cttctgtaat gatatagttt
      181 gactgaagtg tgcagtttat taactacata aagacgatat tattagagcg gagaaaggca
      241 gccgaaagtt ttgcctttca gctcagcagc aggggttttt gatactttga tctcaatcaa
      301 tgctaaatgt ctttgtgaga tagagggagc agcagaaatt acctttggca ccatgactac
      361 atcaattatt tagttctttt tcttataaat
//
LOCUS       KCLJ01003478             617 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 387625cal ultra-conserved element locus
            uce-2265, sequence.
ACCESSION   KCLJ01003478
VERSION     KCLJ01003478.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 617)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 617)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..617
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="387625cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>617
                     /note="ultra-conserved element locus uce-2265"
BASE COUNT          189 a          109 c          108 g          211 t
ORIGIN      
        1 tactgtttaa aaaaaaggct tgcaaaagcg gccctctctt aaatcatcca acagtcctaa
       61 attgccaaga cagacgtgga tactgccgtg cttaaaacta tttatttaat tcactgccgt
      121 ttggattact acaaatgatt ttaaggtttc tttctcatac attggaaagt tcctctgcca
      181 tttacttcct agacatttgc gtgcaaattc tgcctgtact gggatctctg ccattaaatt
      241 ttcttcacac tgaagggttt tctctgctcc tggtggggcg aagtcatgac ccagaaaaaa
      301 attgattcat gaattctcag ggtgcaacta aagaagagag gaaatatgcc ttggctgagc
      361 tcctactagt gacaatttaa aacctgtaat tagtttggat tcaagctgca aaaggaatct
      421 gaatttaaaa tgcattaatt caaactgata tattaacttt aacaaagtag atcaattatt
      481 atgtagaatc attattacag tctgttttgc taactgttgg attccagact ttattaactt
      541 agaatttatt agaaaatgca agtaattgct tgcgaacact tttcttggtg tttttattga
      601 ggttagttag ctttaac
//
LOCUS       KCLJ01003479             396 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 387733cal ultra-conserved element locus
            uce-3346, sequence.
ACCESSION   KCLJ01003479
VERSION     KCLJ01003479.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 396)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 396)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..396
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="387733cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>396
                     /note="ultra-conserved element locus uce-3346"
BASE COUNT          128 a           56 c           60 g          152 t
ORIGIN      
        1 ttttttttaa caaaagaacc tgtttcaatt tattatacat gtctaaccat acaattatca
       61 atgcagcatc ccataactaa tgctgaccca ctttcccaga aaaagatgtt cattgtgcat
      121 ttgaaaggtt aaaaaggttt ttgtggttta aatgttgtta catattttac agcattagga
      181 tctatggaat attttgacaa ctgcaacagt tcaatgaagt tggtaatttc ttcttttaat
      241 tatttttcat tgaacagatt tggagttaaa tttttaagat ttgtgttctg gtatattata
      301 caggaacatt ttgatgaaat gtatcatgca aaattagcta gagtttattg ccttattagc
      361 ctttaaacat aaggtaacca ctggcacata attctg
//
LOCUS       KCLJ01003480             479 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 387839cal ultra-conserved element locus
            uce-1826, sequence.
ACCESSION   KCLJ01003480
VERSION     KCLJ01003480.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 479)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 479)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..479
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="387839cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>479
                     /note="ultra-conserved element locus uce-1826"
BASE COUNT          188 a           91 c           83 g          117 t
ORIGIN      
        1 cccaaagaaa ctggtcacaa aaatggaaaa gagtctctac actaaacata cagcaataaa
       61 accctttgaa ctaaccaaaa tgtgaatagc ttttataatt aacaaaaata tagttctggc
      121 ccctcaaact agggtaacct aatcaaggca aaaaaattaa gaaatggctt actgttaagc
      181 acaacacttg tacagtacta caaaatgcac tgtcactaac aaagacatta gcggcatgca
      241 gaagtgtcac cttcagaaac aaaataatac aataaaagaa ctgctaaaag gcatttacat
      301 gtggggaaag gagagagaaa aagctcatga tccagtactg tctgatagtt ttggagtcta
      361 tttatccaca tttttaatgg gagcaggcac ataaaatggc tctgaaccat cagctgctgt
      421 gtaattgcag ttcatagaaa gagttcttcc tttccaaaga acttcaagct cagtgaaat
//
LOCUS       KCLJ01003481             539 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 387947cal ultra-conserved element locus
            uce-2847, sequence.
ACCESSION   KCLJ01003481
VERSION     KCLJ01003481.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 539)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 539)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..539
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="387947cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>539
                     /note="ultra-conserved element locus uce-2847"
BASE COUNT          175 a          105 c           82 g          177 t
ORIGIN      
        1 gtcacaaaat gcagaaaatt acaaatcagt tttaaggcat acatgacagc aaaatataag
       61 tacacaaaaa ctacattaaa tatcagtctt catttgtccc taccacttca acttacctct
      121 cagctcccaa ctcctggctg cagtgcacag cttgagatag tctaagatcc attttagagt
      181 ggactgaaat ataaatgaca gttcgcacta cacatgaaca tagacaactg tataaaatat
      241 ttaaataaag acagaaaaga acagaggaaa ccaacagagc ctttggcaga cccagccttt
      301 gggaatttag cagcttgaga ttcattgcaa atttcatctt taatgttatt tttagttcaa
      361 tattttgtag cactcagaag taaatctttg tgtgctgtct ctcctgcttg tgctgcctcc
      421 ttttctgatc ttgtctttta aagaaaccta atatattttc aatacaattg atttgtgacg
      481 tgttttgtga tatttgttaa agttctcctg tttttccata catttcagtg aaaaccatt
//
LOCUS       KCLJ01003482             673 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 388053cal ultra-conserved element locus
            uce-3718, sequence.
ACCESSION   KCLJ01003482
VERSION     KCLJ01003482.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 673)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 673)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..673
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="388053cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>673
                     /note="ultra-conserved element locus uce-3718"
BASE COUNT          196 a          136 c          146 g          195 t
ORIGIN      
        1 gaggcacaac aggataaagt gattagccca aactcacaca aaagatcagt ggcaaagcca
       61 aaaacaagcc cagggtttct ggggcagagc tgatgggatc acatgctgca caaatccatt
      121 acagagagat gtagtagctt tgtggtctga gctgtaagtt caatgttcat ccactccaaa
      181 aatataatgt atggagagtt gagtgtattt taagagttgt tcctttatcc tcacagcaac
      241 tggaaaggat ggcagcctgc cctgaaatag taactatcaa tatatgatgc cttttgcagc
      301 tttccttcct gatcaaataa ataatttgta aggttttgat gacaaaagga tgtatcctcc
      361 gctcagctat cacctgccag cactactctg tgcaatctga tttagagatt taagcataga
      421 aatcgtcctt tctgctgttt cccctggaaa cagggagccc agcagagagg ttaatcattt
      481 gggtttgcaa ttcagagtcg gcaaaatcca aaataattcc ccatcttctg agttttgaaa
      541 gatgctgcta gacttctgac tttcaaaggc agtggtgttg cttgttccct gatattgttt
      601 aaaaaactgt aatttatacc tcagaagata gagtggagct ccctttgctt tgccgtggta
      661 cagtcatgct tgg
//
LOCUS       KCLJ01003483             661 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 388163cal ultra-conserved element locus
            uce-5411, sequence.
ACCESSION   KCLJ01003483
VERSION     KCLJ01003483.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 661)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 661)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..661
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="388163cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>661
                     /note="ultra-conserved element locus uce-5411"
BASE COUNT          217 a          134 c          102 g          208 t
ORIGIN      
        1 agacacccac agtgcagatg ctgtagtttt attccagtca ttcacaactt tgcctttaat
       61 ttttggctaa acaaacaggc aaacaaacag tagatgaaac taatggggag cttaattata
      121 tctatccatc aagccctaaa tttgcttcct ttccaaatag caggcactgt ctttgaatcc
      181 aaaaggactg atggcaagat acccagttta aaattctccc actgtcatag actgttttac
      241 taattatcca gattccaagg caatcataca accgtaatca ttcacctcac gcctggaaac
      301 ataagtcttg ttcttttgat gaatatttat aagacagtgt aaagcagtct actttctttt
      361 cccttcaggc aagacaattt ggagttcatc aatatgtatt accaaggact tttataaaag
      421 gcacttcaaa ggaaattcat caggcattcc ttttgtcttg atttctgtta gactgatact
      481 tccttttgac aagtatcaat aaattatcct ctgatggcta gaaacttgat gtcttattca
      541 gaaacttcct cacacagcaa agtctgtcct taagtttcca ataaattttt agcatctggc
      601 ttctaattta aggataaagg aggacagaag aagcaaatga agcacaaaat aatcaatgta
      661 t
//
LOCUS       KCLJ01003484             502 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 388274cal ultra-conserved element locus
            uce-3243, sequence.
ACCESSION   KCLJ01003484
VERSION     KCLJ01003484.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 502)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 502)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..502
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="388274cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>502
                     /note="ultra-conserved element locus uce-3243"
BASE COUNT          182 a           89 c          114 g          117 t
ORIGIN      
        1 acaaagggag aaaatagaac atatatactt gatagatcat aagacctcac tgacgaagtg
       61 agggaataca gaacagcaca attcagatac aggaacgatt aatccaagat taaggaaaac
      121 tgtctaaaca gtttatctcc cagtaataag aaggcgtcac agtttaggaa ccccgtgaat
      181 ggagcaattg tttaaacaca acgaaaaaat gccggcatcc agtagagatg aaatgagcat
      241 ttgagtaaaa tgaaggagca atttaaaagc ttttgagaaa aatcaataga atgccaggga
      301 agagcaggct ttttgagcat tgatgggccc ctaaagctct tcatacattg ttactgagtt
      361 tagcagcagg gaaaagaaaa ttacacagtt tgcaagggta ggcgggaatc gatactgtag
      421 ttagtaaaga gatgctattt cacatctcag tggccagcgg cctgccttca ccagcctgtc
      481 ctgatacctg tttgttaaca ag
//
LOCUS       KCLJ01003485             800 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 388380cal ultra-conserved element locus
            uce-3287, sequence.
ACCESSION   KCLJ01003485
VERSION     KCLJ01003485.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 800)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 800)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..800
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="388380cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>800
                     /note="ultra-conserved element locus uce-3287"
BASE COUNT          234 a          180 c          167 g          219 t
ORIGIN      
        1 atgacagtag ccccaccagt agtccagcct tcactaggac tgatggcctt tatgcacgga
       61 gtagctgctt gtacaagaca gaaaatcaag accttaatac ccctccttgc ccgacacgag
      121 ctctcttccc caatgacaaa ccatgcaaag cacaatagga ggaaagtgca cgatttctcc
      181 aggaggcaca caaagggcaa ccgtatatca gcatgttgat gtatttaaag caaactatta
      241 aatgttttat aaagcaaagg ccaagcagca gaacactggt gagcaaggaa aaactggctt
      301 gatatagcaa attgtatgtc agggcaaata tggctattac aaatgattaa gcatcgcatg
      361 catgtggcat gtcgatttat ctgctttgct gtacagatct aagcagagtc aatcaaaagg
      421 ttgttgaggg agatggaaga gcaaatgctc tgaatttcga ttcctcataa gcagctaatt
      481 gggttgggct ttttcatccg cgaactttgc cttttggttc aaaacttcat tttcctctgt
      541 cactccgtaa ttactacttt tcacttttca tcaggaaaaa atcaaaagca ctatattaat
      601 acttttgtca aaggtacaca ttttacatct aatattgttt gtcgacatga atccctgagc
      661 catttacttg acctcccttt gtctctagag tcttcacatt tgcatgagtt attacaatgg
      721 tgctgtggag cagaggtagg cagcagccag caccgggctc tccatcctcc caacagccag
      781 ttagctgcgg cgaggctggg
//
LOCUS       KCLJ01003486             706 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 388493cal ultra-conserved element locus
            uce-7505, sequence.
ACCESSION   KCLJ01003486
VERSION     KCLJ01003486.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 706)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 706)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..706
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="388493cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>706
                     /note="ultra-conserved element locus uce-7505"
BASE COUNT          173 a          154 c          146 g          233 t
ORIGIN      
        1 aatcagtttg gaaagttcca gttggaggag gcttgagatt tttatagaat acttttgaca
       61 gtttctcaag tcctcaacca ttttgcttcc acttggttat aaatatcctg ccaatttgag
      121 tgttcagcct ttggtttcca aagggggcat aattagcagt ggaatttctg caaactgcct
      181 caagttgtag agaacccttg gtccaaagga ctgggtacat ttgctagaaa agcttgtgac
      241 tgagtgctct gtatgcttgc cttcttgctt ccacctagaa tccagggcca ttactttctg
      301 taaccatttc agtgagctgc catagttttc agtctgtact gtcacctgat ccaagcatgc
      361 gccaaaatac ccaccgtttc tggctcctgt ctgctgaatc tgctttgcaa accctcggct
      421 cctgagcttc tgcctcagcc gtggagtgtg ctggacacat gccatcctgc ttccctaact
      481 cctctaattg tttatgttta ctaaacttgt aaatgctacg gcagcatccc catgtgaaat
      541 tgtgtggctc atgtgtcaaa aaaggctgct tgtgaaaata tttgtcagaa gaatatgaat
      601 gctacacatt gcactgcatt cagtgtttcg tatcaacgat gtcatggtgt tttaattgta
      661 gacaattatt ttgtgtttta atacgcaaag gtaagttctt gtaaac
//
LOCUS       KCLJ01003487             645 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 388605cal ultra-conserved element locus
            uce-7550, sequence.
ACCESSION   KCLJ01003487
VERSION     KCLJ01003487.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 645)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 645)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..645
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="388605cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>645
                     /note="ultra-conserved element locus uce-7550"
BASE COUNT          154 a          127 c          172 g          192 t
ORIGIN      
        1 gtgtttattg atatccattc cttcatttta gtgttttagc aatcatggtg ataaacaaca
       61 ccataacaac gtcctgtggg catctcctgt gctgaaaggt gctgcttaag gagtatctcc
      121 aaatgggagc tggtctgggg cccagcacag ggcaccctgg aggtcgtatc caaggaggca
      181 ggtgggcagg aggcatgaag ttctgcctct catctttcac tctacccaca gagtgctgga
      241 aagcacaaat tctgttgaga ttaagttata atttaaggca gtgaacatgt gctctgctgg
      301 cagctataaa gattcaaatc ataaagtttt acagtggaat ggtttctgta aaagcatcgt
      361 tagaaaggcg gaatcgtgcc tttaattctt acgacttatg gggctgcctg gtttgttttg
      421 gttttagtgg tgcttagtgg gacatgaggt ggggtcccaa ccccatcttt ccatttaaag
      481 tcaggcattt cttccccagg gccctgctgt tccgagaagg actggagatg gtgtagagtt
      541 ttctgtgttc actccatcca tgtgagtttt gggacccctt tgtgcagagc ttttgaacta
      601 gcaggaagaa agatgacagg tgtatgctgc atagttgtgg tgcag
//
LOCUS       KCLJ01003488             560 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 388715cal ultra-conserved element locus
            uce-2506, sequence.
ACCESSION   KCLJ01003488
VERSION     KCLJ01003488.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 560)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 560)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..560
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="388715cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>560
                     /note="ultra-conserved element locus uce-2506"
BASE COUNT          152 a          108 c          148 g          152 t
ORIGIN      
        1 gaaattttgc tgttgctcct gaactgtctc ctctgaggga gcggtagcgc tgcagtgtca
       61 ctagaaaata ttaatgcatg taaacattct tcaaaaggca ttacatcttc ctgcacgtac
      121 tttattatat ccccacaaat ctgactagat ttgatagata ggtaaccagg gagcaaggat
      181 gggggaagca tgctagagag ggaaggaggg aagagggagt gaaataaaca caaacctgct
      241 gtaattcaaa acaaggtaaa atcagattgt gtgctttggc taattttctt attcaggtat
      301 cgatccagtg gctgctccag agtctattag cagtcagcca gtgaaaatat ttcccatcgg
      361 gggctctgac ctgagacggg ggtgaatcta tagcaatttg ttcaaacaga ggaaagcttt
      421 ttcctctgat ttgtattcca atttgcacag cctacagagg ggggtttgct gggtggtgtt
      481 tctcaagtgg gaatcaagct tgagccagga aagcctggat aaactctgag ctgggccgtg
      541 tgcctccctg gctgtctggg
//
LOCUS       KCLJ01003489             732 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 388821cal ultra-conserved element locus
            uce-5291, sequence.
ACCESSION   KCLJ01003489
VERSION     KCLJ01003489.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 732)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 732)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..732
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="388821cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>732
                     /note="ultra-conserved element locus uce-5291"
BASE COUNT          227 a          123 c          139 g          243 t
ORIGIN      
        1 ttttttgtgt gagaaatggt ttaagactga tttcttttat tgcagctgtt taaggatgat
       61 ctaaaagtaa ttacagtgat tgaggcataa tgcaattcaa aataattaca gcccactgca
      121 tataaaacta acaaaacttt ctgctttgat ttatgggtcc tcttggcaag gcataaacct
      181 caaatgatgc ctctgggagc aacactctag ataatgttag gccatttaaa aaaagcagat
      241 ttgtgtagtc tatcaggcct gagtaactca tagtgagaaa ttggttgtta tcatagatca
      301 cagatactgc tcaaagctct tatgaaagat gaattaattt cactaatgct ttaatgcaaa
      361 cctttcatgg aggaggctgt atggtgataa ccttactgtg gtctctcctt tctcaattat
      421 gatttatgtt gtcttttagt agatgaaact gcctgtattc acaatccatc tgctggctaa
      481 aggaatccta ttaacagagg atctgagaag agacttaata atataaggtg aaagatatgg
      541 tatccccttt ctgggacatg aagtaggatc ctattttaaa acgtagatca ctctctgaga
      601 gcatatatgt catctccacc tggttttatg tgggcttaca gatggtatag cagctagtga
      661 ctatttgtta aagctaaaga ttgttgcttt gaaatctgca ataaaaagca aatttatctt
      721 tcctccttcc ca
//
LOCUS       KCLJ01003490             237 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 388932cal ultra-conserved element locus
            uce-7146, sequence.
ACCESSION   KCLJ01003490
VERSION     KCLJ01003490.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 237)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 237)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..237
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="388932cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>237
                     /note="ultra-conserved element locus uce-7146"
BASE COUNT           59 a           60 c           44 g           74 t
ORIGIN      
        1 cacacaaaca caccttttaa atatttccac tcccagactc tggaggctca ccttgtgtgt
       61 tctggaagta gtggcgccac aggggtctga tcttgtcctg accacccacg tcccacactg
      121 tgaagctgat gttcttgtat tctactgttt ccacattgaa acctagagat ggtggcacaa
      181 atctcacttg aacataactg cgtatttatt ctgttgtgat cattgttcac ttaaaat
//
LOCUS       KCLJ01003491             813 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 389025cal ultra-conserved element locus
            uce-1591, sequence.
ACCESSION   KCLJ01003491
VERSION     KCLJ01003491.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 813)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 813)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..813
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="389025cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>813
                     /note="ultra-conserved element locus uce-1591"
BASE COUNT          265 a          162 c          126 g          260 t
ORIGIN      
        1 ttttgatgta cattcaactt tatttactat tgcatgagct cagtgttctt caaagtattt
       61 acattgttta acactgaatt caatgttgag accaaataag aatgtttgtt ctttcatcct
      121 tctaaaaaaa actttatatg atgtatggtt ttcttatatt cactgactgt agatatattt
      181 atataagttt gcacagcaag tacagaagtt tcatataaaa ctactgatcc aagcgaaacc
      241 ctatcaaatg gtgttctctt ttattctctt tctgatccta atgcagcttt tagataatgc
      301 aaatagatca caggccaaaa tgatctgaca agataatgga gctttcattg ctgcctgatt
      361 aacttggctg tagggttcca cctcgaccct ttcggcatga tggtcctaat taataatgat
      421 tactcccaaa atgtgcaaat ggaacgataa acgaagaacc aactaattaa ctgcaaccat
      481 ttctactaat cattagttaa catcccattt tgtcatcatt acactgaagc gcatgcaagg
      541 acagataaaa cagggtcagc ctttttgccc ccataaacct gacagccata ttttctttcc
      601 caataaaaga caaacaagta attaaactga gagctgaagt aagggccaca aaattcgatt
      661 acttcaatat tccaccggtg ggtgaaacag aaccattttt caaaataagt gctgaaatca
      721 tcccattcct caggcatact tcaaaggtga aattgttttc ttttctatca gaatacggat
      781 gcactacctg aaggattact tcagctttca gga
//
LOCUS       KCLJ01003492             531 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 389137cal ultra-conserved element locus
            uce-7757, sequence.
ACCESSION   KCLJ01003492
VERSION     KCLJ01003492.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 531)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 531)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..531
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="389137cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>531
                     /note="ultra-conserved element locus uce-7757"
BASE COUNT          163 a           99 c          110 g          159 t
ORIGIN      
        1 ttcagagaaa gaattggaat gtttgcccat gcaaaaaaga ctcaatgtaa ggcaattctg
       61 tcgctcacct catcttcata atctttctta gctccctctg ccttctaacc ctgctattga
      121 tcgtgtcata ggctacagta gtccaaggca gggggctgaa aacctttcca aacagcagtt
      181 gccagtctgc ctgttgcagc ttgaagaaga aaagcatgct gtgaaaacaa tcagtgcatt
      241 tgctttagat ctaagtgatt ccaactaggt cgatgcttca tgctgatgtg ttgaaaacat
      301 ttaaaaaatt tctcagagtt tgatttcaac tggaacattt cagcatgtgt ctgactctct
      361 gaagttgtta tttctcacta atgtagcaga caacaaaagc agtagggaaa ctgggccttt
      421 atttgaatta aggttgtttg ataagctaag gctcctgcaa attgagagga gtaccagttt
      481 atttcaggaa agaaaaagta atcaggtaat cattttgcaa atgagagtat a
//
LOCUS       KCLJ01003493             588 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 389243cal ultra-conserved element locus
            uce-2009, sequence.
ACCESSION   KCLJ01003493
VERSION     KCLJ01003493.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 588)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 588)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..588
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="389243cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>588
                     /note="ultra-conserved element locus uce-2009"
BASE COUNT          145 a          131 c          105 g          207 t
ORIGIN      
        1 tgaagtggag aaagtttaat tgtgctgctg atttccttgt gttccctcca ctctccagca
       61 gaagccttct ctagattgct gtcatttcta agtttggaaa caataacctc tccctcaccc
      121 ggccagttca aagagaaggc cacgttctat caaacactcc ttgtgtttaa tagaagtctt
      181 tgaaaattgt caagcaattt tggtttctcc ttttactctt cagctacttt tgatttaatt
      241 gtgttttcca gcagtttcgg attggaaact taataagagt tctagttaat tttctctctt
      301 gtaattaccg atctcatttt tctgataatt ggccacagca attatatgta tatttactaa
      361 tcacacagga ggctctgcag tcgtgtctat ctgccaccat tgataatggc acacacattg
      421 cagaggtgct tttatcatct tcttttttcc actacatcaa agctatttcg ttccccataa
      481 tgaatacatg catgcatttg acacagttgt gtgctagaga aattgtttgg ctcccaccaa
      541 atgctgcacg ctccgagttt cttgcctgca gcgctggaag gttgtatg
//
LOCUS       KCLJ01003494             522 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 389355cal ultra-conserved element locus
            uce-6562, sequence.
ACCESSION   KCLJ01003494
VERSION     KCLJ01003494.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 522)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 522)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..522
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="389355cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>522
                     /note="ultra-conserved element locus uce-6562"
BASE COUNT          170 a          114 c           84 g          154 t
ORIGIN      
        1 gaaaggttct tatcaattca aagttatcac ttccccactt ccccaaacta taatggatat
       61 gccatggaca cagaaactcc tgaacagttt agcccccctt tgcagaatgc atagtttaca
      121 attcacttac aaaataaaga agcaatgctg accacatttt tttttttttg aaaaaagaac
      181 aaacaacctc ttcttaagtt cagtatcaaa attcacattt gcataataat acatttcaag
      241 gccattagag aggaatgaga gcgaagcaaa gaaaactgca gagtctctcc tctctttgtc
      301 ttcctgaata gagctgaggg atcccactgg actttctttt cagggtggga attacaaagc
      361 gctacaacaa cagctcttga tcttgtacac ctcatgtttt gggtgggaca attattaggc
      421 aaatggaagg agacactgca gattcccatg tttagctaca aacagctttg aagaaactta
      481 cttcagattt tccttttaaa cacttctacc ttaccatttc aa
//
LOCUS       KCLJ01003495             948 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 389465cal ultra-conserved element locus
            uce-834, sequence.
ACCESSION   KCLJ01003495
VERSION     KCLJ01003495.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 948)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 948)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..948
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="389465cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>948
                     /note="ultra-conserved element locus uce-834"
BASE COUNT          324 a          161 c          151 g          312 t
ORIGIN      
        1 agaactctcc ccaaaagtct ttaattatat gtctgtgtat caatatgtaa tactttatgt
       61 ttctccagac atcttttagc tgacacaggc agactttaaa aggagtaaaa tcagcagtgt
      121 aacaatgaaa tgcatacaaa cttgttaaat gtgatggcaa aataaaaagc ttcagtcagt
      181 atgatcagtt aaaaaaaaag atagccagca aactgtctat catgtgatga aatttgacag
      241 tagggattat ggctttgatg gaccagaaca gctaatagaa gaagctgaca tttttgaaac
      301 cctgctaatt aagggttcct tccttaatat taaaataaag tctttgtctg ggttttatgg
      361 ttggagaatc aggtgttttc attaatatat gccagtcagt cttaataagc ttggagggca
      421 gaggaagtta ttattgagtg accttctaca aaataagcat gttgctaagg gctctaaccc
      481 tgccctgttc agactgatga atctcatttc caatgcaaaa gcttcacaag aaatccaagt
      541 attctctgtg caatcacaga aaataatcct tgtgtctctt gtaatgtcca gaattgccac
      601 ttactatact actactgtac aatgaatatt acaatacaca ttatttttct agcacaattg
      661 tctgcatttc tgaatggcca agaatacaaa aacttattgt ccagacactt gtattgaaaa
      721 gtcagctcat tttaatactt ctcaaatagt catctaccct gttcatgaat tataatgcac
      781 agaatacatc tgacaatact agctttgaaa aagagatatg cctgtattat tacatattca
      841 ttttcaaata gattttcaac agattttaaa ccattcattg aaattcattg agatgataaa
      901 ttcacagttg gattttgatt gactcttaat ctaattttac atttgata
//
LOCUS       KCLJ01003496             478 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 389576cal ultra-conserved element locus
            uce-4969, sequence.
ACCESSION   KCLJ01003496
VERSION     KCLJ01003496.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 478)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 478)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..478
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="389576cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>478
                     /note="ultra-conserved element locus uce-4969"
BASE COUNT          134 a          109 c           83 g          152 t
ORIGIN      
        1 agaaaccggc agaagagaga cctctagagt tcctaagcta tgtaaactgt gatttcaggt
       61 gctgctcccc cccctttctt gcagcagtca ttccatcaat gcaaagtgcc taaactggac
      121 acctggaatg gtttacccag cttgttcctg ttgtcctttt accatttctt gtgcaacatc
      181 atcaggagtt tccttctcca gatcaaaagt aaactcaatg gctccattat ctttgggttt
      241 tcctttcagt ttcttaggat cttctaccca gagtcttaag gcaatagagg atttcctacc
      301 atggtcttct tctgcaagtt ccactcttac cccagtatct tcagcaaaaa aggcatggct
      361 taataaatct ttaatttcgt atctgcagaa tcaaacactg catcaacttt agaaagggaa
      421 atatttatgt ttggtgttca cccataatga atttttctga aaatgaaaag aaagtgaa
//
LOCUS       KCLJ01003497             765 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 389685cal ultra-conserved element locus
            uce-5345, sequence.
ACCESSION   KCLJ01003497
VERSION     KCLJ01003497.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 765)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 765)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..765
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="389685cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>765
                     /note="ultra-conserved element locus uce-5345"
BASE COUNT          219 a          139 c          157 g          250 t
ORIGIN      
        1 aatttgctca tattaatgct ggaagagagg gttaagtgct atgtgacaga aactgtatta
       61 gctgttgcaa atcattttga tcaacagcag aacgtttgcc ttcgaatctc tagtcccagt
      121 tggagcagca acctttcccc tataattaat ttttgtgtgc tgtagtccat tagagaagag
      181 agtgacagcc tctggacaca gattactgtc ttaggtatgg cccaaaggaa cattatggtc
      241 ttaattaaag gtggctcaat atgtcagcca ttgcaatagt ttgagcattt ttaatactgt
      301 gtcagtatct aaccacctta aaagaattct ggtagcaagc aaactaagta atttaaaggc
      361 agctcatgtt ctctgtaagt tttgtaggac tgctattggg aatacttgat aatttatgaa
      421 ggcttacacc accaaattaa ttacattttc ctgatgccac atgtcttttt catacaagct
      481 agctctgaat tataagcacc aatattgtcc ttgttcattc cttcagtaca ggagacagct
      541 tactaattac accagtagaa ttcagttgct gtgtgtcatt tattaaacac tgctgcagtt
      601 aaggtggtat atgcttctct actattgacc ctgatttctg ctgtactgca tctcagttct
      661 gagcctttgg caagggtttc atttgggagc attttttgta ggaaaaataa gttctgagga
      721 aatgacaaat gcagagaatg ctctggtgtg caggaggtac aatgc
//
LOCUS       KCLJ01003498             460 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 389795cal ultra-conserved element locus
            uce-7716, sequence.
ACCESSION   KCLJ01003498
VERSION     KCLJ01003498.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 460)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 460)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..460
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="389795cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>460
                     /note="ultra-conserved element locus uce-7716"
BASE COUNT          120 a          107 c           92 g          141 t
ORIGIN      
        1 ccaggatgga atgtaaatgc tgcactaatt taattacact ttggcgctgg gagacactaa
       61 tgtaaatatt ctggtgagta ggcctaagac acttgaagta attacttaaa ggcttccttt
      121 caaagaatct cccccttttt attaaatgcc ttttaacatt agcactttct tcctgacaaa
      181 ttaaatgaaa tttcattact ctccctgact taatggcatg aggctgcctg ctgcaagtga
      241 gagttaaccc tctctggatg gaagacacag agtttgagtg ctctggttgg ctcctggtgt
      301 caccagcatc cccctggatc cccatcatca tcctcaaatg tgcctctaag ttctgcctcc
      361 tgtcccagaa tgtcccatgt atttttctcc aggtttaggg gagcacaggt tgaagctggg
      421 aactgatcct aggatcctta agagatatgc tcatacaatt
//
LOCUS       KCLJ01003499             547 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 390016cal ultra-conserved element locus
            uce-516, sequence.
ACCESSION   KCLJ01003499
VERSION     KCLJ01003499.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 547)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 547)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..547
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="390016cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>547
                     /note="ultra-conserved element locus uce-516"
BASE COUNT          171 a          113 c           92 g          171 t
ORIGIN      
        1 agtgatgctt tgcaccgggt tattgtccgc aaaccattat ttgtagaaaa acaaacaaaa
       61 ggagaacatt ggacatactt ttacatgata cttttctgat tcctgaaaat gtgagataat
      121 gaataaaaat gttcattaca gaattattca cttttcttca tgattcacgt cctagtaatt
      181 accgtgacca gcctaataaa aactgctaca aaacgaaggt caactagcag ttagaagtgt
      241 tcattttcat ttcaatgtat tcatctctgg ctcctaatgg cctcattttc tcctatgctc
      301 tttaataaat accactgaat tacaggttaa atagctaaat taaattattg caattacagc
      361 gtgcggagca ctgaaactgg tttacctttc ccagttcaat tagaggggaa gtttcaacag
      421 cccgagactc ctgattgctg tcaatattct gaatcactag gaatcctcac taaaggccag
      481 gttatttggc tacagactgg gtaatttcca cacccctctt ccctcctgta taaagaggaa
      541 tgacttg
//
LOCUS       KCLJ01003500             468 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 390124cal ultra-conserved element locus
            uce-3660, sequence.
ACCESSION   KCLJ01003500
VERSION     KCLJ01003500.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 468)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 468)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..468
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="390124cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>468
                     /note="ultra-conserved element locus uce-3660"
BASE COUNT          153 a          100 c           71 g          144 t
ORIGIN      
        1 aaaacctgag aaaccagcct ctaaattatc catttgtaat gtttcttcat ttcagctgaa
       61 acaatgattc cagtacattc tcttttaaac tttgtatccc agtccaagtg gccacctact
      121 ttgttgtcca aatttctcgt gcagctcgaa tcttacaatg tgtaatctca gtagggttat
      181 cagttatgtc atgcattata cagcctccaa tcagcgtagt gggaaacaac attttcattt
      241 aataccagga gaaacagtgg aagtcagcga ttgataccaa cacaatgatg ggaaaaagtg
      301 tccagaggtg ctactcacat aatctcactt tacaacatct tgaaaattca atagaaagga
      361 ctttgctaac aataccagaa tgacatacca ctgattattg ttcctaatgc tcttgacaat
      421 aagaaagctc tctaaatata tctcaaccat ataacagttt gtttcttc
//
LOCUS       KCLJ01003501             374 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 390232cal ultra-conserved element locus
            uce-6665, sequence.
ACCESSION   KCLJ01003501
VERSION     KCLJ01003501.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 374)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 374)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..374
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="390232cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>374
                     /note="ultra-conserved element locus uce-6665"
BASE COUNT          119 a           62 c           56 g          137 t
ORIGIN      
        1 tttttttgaa cagcaagatt aaaagtcttt tgaagaataa tgttttccta agttttagct
       61 gacattcaat tttaatgact ttttaaacaa agtaactatt aactgtgcat cgttttatag
      121 tttcctgatg tctgacaggt gtttttgccc atgtgggaaa cagatgctaa taacattttc
      181 cctaatagct cataaataat aagcatttag cattttcctt tgtatactgc tctgtcaata
      241 gacaatttac ttttcagaag ccacaacatt ttcctgtcaa tcagttttag cctcgggcac
      301 tttttggtga ttagaaaccc cttagagagc gagaactcca aattagtttt aaataaaaaa
      361 taagaatatt catg
//
LOCUS       KCLJ01003502             496 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 390339cal ultra-conserved element locus
            uce-6013, sequence.
ACCESSION   KCLJ01003502
VERSION     KCLJ01003502.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 496)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 496)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..496
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="390339cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>496
                     /note="ultra-conserved element locus uce-6013"
BASE COUNT          145 a          100 c           89 g          162 t
ORIGIN      
        1 aattataact gtatttaaaa tagatccact tttactttaa aggtaattcc atgaacagta
       61 ttaggcaaaa actacatcag tctgcatata tactgaaact gatcaaagag aaaaccccag
      121 cccaaaggtg ttatgggttt acaatggagc tttctgtcag tttaatttgt agacaacaaa
      181 acaggtcaca taaagttcaa gaaatgtgtc aggtcagaag ctgtccccca aagcagaata
      241 aaactggtga tgttataggt attacttacg gtagatcagg cagcactttg acttggttct
      301 gcttatcgcc atttagcatc tgtaatgtcc tttgagactc agggcatggc tgttgcccta
      361 ttttcttctt ctttgctttg tgtacctctg tctcacgcat ccctatctct cgcaaagcag
      421 gtgaatagga acagacctgt tgcaattttc ttttgttact ctcgctttat ccacaatacg
      481 ttttttaaaa tctgat
//
LOCUS       KCLJ01003503             621 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 390451cal ultra-conserved element locus
            uce-5322, sequence.
ACCESSION   KCLJ01003503
VERSION     KCLJ01003503.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 621)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 621)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..621
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="390451cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>621
                     /note="ultra-conserved element locus uce-5322"
BASE COUNT          202 a           73 c          112 g          234 t
ORIGIN      
        1 ggggagggag taattttctc tataatcctt gttattatat caaaagtgat agttgaggac
       61 taagagctga aacaatattt tatgaaagta tcatgttgaa gtttttgcag gtttcaaaat
      121 atttaaatat gtaaatttca atgaagagac ttcagatttt ttgatagcct aatgatttta
      181 agcatctcat ttctagtcaa acactgacaa aagatgttca gattgcagtg tgagatggtt
      241 tctatggtta cagttgtttc ctagcatttt agtgacatct tttgtgagca ttggctgctt
      301 cacttatttg tcactaatgt atgtgtagaa ctatagttaa tagccttggg cggacaattt
      361 ttttttctct gaatggtggt attgtttttt agcagcattt ttcaataagg tgacaatgca
      421 ctagaatact aatggtatgt atggtatttt aagatgtcaa gttttcaata aaatggtaat
      481 gaaaattttg catttcattt aatagctaaa tattcatgaa tttttcacag catgatcaag
      541 tgagcaaaaa ataaaggaac tgtataatgt gtaatactaa acatcataaa tttaacttct
      601 ttttatagaa ttgactcaag a
//
LOCUS       KCLJ01003504             273 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 390664cal ultra-conserved element locus
            uce-5683, sequence.
ACCESSION   KCLJ01003504
VERSION     KCLJ01003504.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 273)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 273)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..273
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="390664cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>273
                     /note="ultra-conserved element locus uce-5683"
BASE COUNT           88 a           48 c           41 g           96 t
ORIGIN      
        1 ttttaatcac attttccaga cacacactta gtaataaaac caccattata tcccagaacg
       61 gatttaagat atttttaagg gaaatatgag tttgaatgac taatagttac cttatcatga
      121 agtaggctta taattttgct atctgagtct gcagcgtctt cagttcagtc tcttcgcgca
      181 ttagcacgct gagtatgatt tattatagaa atgttatcat gtgagctaaa caatagatta
      241 ttcaatttca caaaaactcg cctagatttt tct
//
LOCUS       KCLJ01003505             574 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 390763cal ultra-conserved element locus
            uce-1203, sequence.
ACCESSION   KCLJ01003505
VERSION     KCLJ01003505.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 574)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 574)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..574
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="390763cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>574
                     /note="ultra-conserved element locus uce-1203"
BASE COUNT          200 a           99 c          129 g          146 t
ORIGIN      
        1 attttgatga tcgcagaaga ccctgggaaa gacagaggga tagggatgat agagatttta
       61 atttctgcag agaaattaat ggaaacaggt ttggaagaga cagaatgtca aacaactgga
      121 tcccacctcc acatccaagg gtttttgaat attttgatgg ggccacatct caacgcaaag
      181 ctgataatat gccccaggta aatggtgaaa atacagagac agaaagtcag ccgccagctg
      241 cacaggtgca ggatgatcca gaactttatg aaaaactgac atcttctgtc gagataaaca
      301 aagagaagaa tgacacagaa gctgatatag agagtgaacc agtggtagaa agcacagaaa
      361 ctgaggggac ataatcatca ctcagtaggt aaaagatacc ttttgtaaag ttgtcatctc
      421 tctgtaatag ataaatggct gactggaccg tagcagttca cttttgtctg ccagaattaa
      481 gttaatctga tgttcatgtt catctttcac ttaaataact gtacaactga cttgtataga
      541 acactgttct taatttgaac atggtaggta aacg
//
LOCUS       KCLJ01003506             639 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 390869cal ultra-conserved element locus
            uce-2511, sequence.
ACCESSION   KCLJ01003506
VERSION     KCLJ01003506.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 639)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 639)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..639
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="390869cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>639
                     /note="ultra-conserved element locus uce-2511"
BASE COUNT          175 a          107 c          151 g          206 t
ORIGIN      
        1 aggccaaatt gctttaattc tctataaggc cttgtttttg ttgtatttcg gccagcattt
       61 tccagtgcac agtatttttt gctcagtgta aacagttcct tgctgtggtt acacagacaa
      121 atatagcagt tttctcagag aagattctcc ctgtgcattt tttaaccatt tttgggaaga
      181 attgatctat ttgtgcatgc aggcagtagc tgtaaattga agtgacatca tatatattac
      241 tcccattgat ccacttttag actagagcca ggataaaagg aaatggcatc agggaggaag
      301 tatgctcatt taggcacaga tcccagtgtg ataatggagt aataatagaa atcacgccac
      361 tgtcaatcgg ttgctgcatt agtctgaggc agattttccc tccaaggagg ctttcaatga
      421 cttcattcaa gtgcaggcag gagcaaatgg gatattcaac ataccagctg tacaacgtga
      481 tttgtgtcct ggtggacggg tgcagtgcaa ggtgctgtgg atactcaagt agatatagct
      541 gaaaggtcag tagtcaaatg ttttagtata aagggtgaat ctggcattta ttgtgtttgt
      601 taatttagga attgataaat ttcgtgtggg tggtcttcg
//
LOCUS       KCLJ01003507             499 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 390981cal ultra-conserved element locus
            uce-7504, sequence.
ACCESSION   KCLJ01003507
VERSION     KCLJ01003507.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 499)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 499)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..499
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="390981cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>499
                     /note="ultra-conserved element locus uce-7504"
BASE COUNT          159 a           84 c          101 g          155 t
ORIGIN      
        1 aacaaaacca ggtacaactc tgctaaagtt aaatggattg tccctgctta catcaatgat
       61 aaatttggtt tttatgttgc aaaaagagaa aacagaaagg ctgacaattt atcttaaaac
      121 atctactttt gttcttaatt gtagtggtgt tctgtaaaga aacacgacct tacagggcat
      181 tttcaggaat ggaacagtct atatattaaa aggcagcaaa tgattcataa ctgcttagcg
      241 gtcaggcctg tggggccatg cttcccatgt gaaatttttt tctgcattgc aaactcttac
      301 attaaattgt gataaatgaa gagcggaggc tattcataca aatcaatgac tttagtgtat
      361 gtgtcattag cctgagagat gcaggcagcg gtcactacta taaatcatgt gatgatctgc
      421 tgtctgcgac tcgatgcaag caagcagatg cattaggaag gttaaagaat gaaattaatc
      481 tgtgcatttc cttcttttt
//
LOCUS       KCLJ01003508             624 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 391088cal ultra-conserved element locus
            uce-3856, sequence.
ACCESSION   KCLJ01003508
VERSION     KCLJ01003508.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 624)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 624)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..624
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="391088cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>624
                     /note="ultra-conserved element locus uce-3856"
BASE COUNT          189 a          132 c          122 g          181 t
ORIGIN      
        1 aatgatttcc caaattttgc atgaaaaatc acattgctcc ctgtcttcat gttatttaat
       61 ggctattacc ataatgagag caatgggagc aattcatact gtagatgaga ctgcattgat
      121 taacagctaa aatggtagct gtaaatattg ccaaatacac tatgtccagc tacaatcgca
      181 ctcgttctgt gtcaatccag ctgtgagatg atggatagaa agtaaaaata aaatcaccaa
      241 cctcagaatg ctttcgccaa atgtctatgt tctttcgctg ggctttcgag aaatggtccc
      301 aagctttttg tctggtagaa gcgttgaaaa cggcgacaat ctgctcaact ttggtgaaca
      361 aggaagtcaa acaagacaag caatttatgt tgtgatcact atagagaagc aaagcaaaga
      421 cactaggagt ctatggatga tgtcattact gaaacaacat catcaatatc catccaatga
      481 tgtgtctttc gtacttacat tgtatcaatg ttggagatgt ctcccttcaa gtctgtctcc
      541 ataactttca ccaagaacca gctgcttccc catgatgtct gctaccactc cctgtgctgg
      601 cacagtgtgt ggcgtgtgtg acca
//
LOCUS       KCLJ01003509             709 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 391199cal ultra-conserved element locus
            uce-3783, sequence.
ACCESSION   KCLJ01003509
VERSION     KCLJ01003509.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 709)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 709)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..709
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="391199cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>709
                     /note="ultra-conserved element locus uce-3783"
BASE COUNT          225 a          126 c          121 g          237 t
ORIGIN      
        1 cttcattttt atgttctgaa gtcactggaa atgaggaaat tattgtcact ttcattggat
       61 gactttcttg ggttttaaca cattaatatt tatgctgctc aattgtctat gttataaata
      121 gcccctcaga aatctctgtg ggtccctttt tagcttagat atttaaaaca taagtagcct
      181 gaaagcagct aaatatcagt gctacatgca acttcatcaa aagacagaaa gaaggtgctc
      241 aagcactgga tcgtctcttc ctcccaggaa agagttaaca caaagaaata aaatcagata
      301 tgtgtagcct ccagacgtcc attaaagtgc agaatgctgt tttctatcac agattatatg
      361 ccagatgttc aaactatctc taatcattgc agatgtaatg gagtagaatg ttgcagtttg
      421 tgagtttact ggcattaatt ctgtatactg cacaagggaa aagattttaa atatataatt
      481 atatctcatt aatactcagg ttttatttcc tttcaatgga acaggactta ttaaagcaac
      541 catttaccgc atgttttctt ttagtgtttg gccccagcat aatcctgtgt gcattgtaca
      601 tgtaaatatg tactaacctg agtatatgga aacacacact actgtatata attccactgg
      661 tataaccccc catatgcatg agatgttttt ataatgtaaa ttgacaagg
//
LOCUS       KCLJ01003510             454 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 391308cal ultra-conserved element locus
            uce-826, sequence.
ACCESSION   KCLJ01003510
VERSION     KCLJ01003510.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 454)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 454)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..454
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="391308cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>454
                     /note="ultra-conserved element locus uce-826"
BASE COUNT          107 a          107 c          102 g          138 t
ORIGIN      
        1 aaaattgagt ggatgattca gtcttccatg cccccaactt cagcctctgc ctctgcccac
       61 aaccccagca aagtaacgct caaggctcag tcctatctgc ctgtgtatgt ctgtgctttt
      121 ttttttccgg agtgacttgt ttgtgctgtc atcagccgtt gttttggtaa atggtgagtt
      181 aaacagatat atccaagcgt aaaatctaaa aaatgttccc tgtgggcgcc tggggggtgt
      241 tgtttgaaat caactacata tcaattgagc ggcggcgagc ggatccgatg ataaattcca
      301 gtccacagac gccttataaa ttacattttt ttgttcacga tctagcctca tctcagctcc
      361 ccagaggccc ttagactgag aactatgatt gtgttggaga aatgtttgct cagcttgagc
      421 gatgccatta gtgttacatg tgccaggccg ctct
//
LOCUS       KCLJ01003511             637 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 391413cal ultra-conserved element locus
            uce-6635, sequence.
ACCESSION   KCLJ01003511
VERSION     KCLJ01003511.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 637)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 637)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..637
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="391413cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>637
                     /note="ultra-conserved element locus uce-6635"
BASE COUNT          165 a          154 c          137 g          181 t
ORIGIN      
        1 tggctctcag cccctgcttt ttaatcataa tagatcattt tcggatgtca gagggaagca
       61 cgtttttatt tggcacacct attttcacat cgtgggcacc ccctgctcat tattaataaa
      121 tacacttcga tttatcacaa tttgagtgcc acggggagcc tggggcaaaa ggagacaaat
      181 tcttttctta agttgttctg aaaggtgctg ggcttgccga ccctcacccc cattaaccca
      241 gcacagctcg tgtgctccta ctgggagctc cacggcctgt gcagcggcag gctcggactg
      301 atcttgtgcc atctcaatat atttgttcat tatcttgcgc acacacagaa gcatttggaa
      361 atgtactcgg ggcacaggcc aaattgaatc atctgccttc attttccaca cgatctgaag
      421 ctacagctgc tacaacaggc tgtgggattt ttattttcct tccttaacag ctcgctctta
      481 aagtcacagc ggtctcattt taaagcttgg gttttgtctg tgtggtataa aactggtgca
      541 tacaaagaaa ttcccagcaa ctgcacagtt ctgaaggaaa gacaaagcag aagcctcagg
      601 gagagacata atgaaggtat taatctcaga catgcct
//
LOCUS       KCLJ01003512             629 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 391520cal ultra-conserved element locus
            uce-7596, sequence.
ACCESSION   KCLJ01003512
VERSION     KCLJ01003512.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 629)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 629)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..629
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="391520cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>629
                     /note="ultra-conserved element locus uce-7596"
BASE COUNT          217 a           94 c          109 g          209 t
ORIGIN      
        1 tgtgttcaag aaaattagtg cagctattta atgtcaactt tttaacataa atattaagtc
       61 ttctctcctg ctaactcttt gttttatttc atctgtcagt gagaagaaga aagagaaaga
      121 gcgtgaagaa ctgtggaaaa aactggagga tttggaatta aagagaggtc ttagacgtga
      181 tggaataatt ccaacttaac tacaaaacag cattattaac ctgtggagtc acacatttat
      241 gtagtagaag atggagcaac agttttctgt attgtgcaac tttacagtag atttcacatt
      301 tgtttcatta ttacaacagc actgtatata cctgtctcta agtaaaggaa aaaaataagg
      361 actttaatcc aaagtttgga caacagatgg acttctcaga actttgcaaa cataatcatt
      421 gttttaaccc ttctttaaaa aaagatctgt tgatgaaaat tgcaatgtca gattccattg
      481 tcaggacctg ttccttattt atcgttagca gagagtataa tacaactttc aaatgtgaac
      541 aatcttaaaa tttagcttgt ctttctgcta aactgttacg tgtatttata gtaaaagaga
      601 aaaaagactg tcatttcctt atgagtttg
//
LOCUS       KCLJ01003513             710 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 391716cal ultra-conserved element locus
            uce-4114, sequence.
ACCESSION   KCLJ01003513
VERSION     KCLJ01003513.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 710)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 710)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..710
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="391716cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>710
                     /note="ultra-conserved element locus uce-4114"
BASE COUNT          216 a          153 c          136 g          205 t
ORIGIN      
        1 ccactgccat ggcagagccc atcttttaag gagacataat tagaaaatcc tgacattcat
       61 tcagttagca tttgttctaa atgtacttta acaataaggc ccattttcct ctagaacaag
      121 acccaggctt gaggaatgtt cctcctccta ccctgaccac gaaagcattt gaaagctccc
      181 aagtaaattg ctggacatga gacccctgat tgctgtgcct acacgactca ggattgatgg
      241 ctgtaatgaa attacagttt tcttttccat ttctggcatt agtcaaggct tcatgtccaa
      301 agattattcc accagacatg ttctgcggat gtgatgggat tagccaaatt tcaaagctta
      361 tttttgacct ccagcagaaa attgagcaca tacgctattg aagccaactg ggactataga
      421 acatcaagtt gattcatcaa attagctcaa actgcatgac tggctatgga agttgtcagc
      481 tataaacctg tcaaaaagcc atcagcttta atgttaaata gagacacaaa gtaatgttgt
      541 tcagaatttg acatttgttg gacttacgcc tgctaaagga tgctatctgc tttgtttcct
      601 cttaaaaaat gtgtagtctg aaacacagcc ttgagagatt gctggagaca aaaaaaccct
      661 ggctggtaga aatcccagct ttaacaaagc agatatgtct gtgctgcctc
//
LOCUS       KCLJ01003514             634 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 391827cal ultra-conserved element locus
            uce-90, sequence.
ACCESSION   KCLJ01003514
VERSION     KCLJ01003514.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 634)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 634)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..634
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="391827cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>634
                     /note="ultra-conserved element locus uce-90"
BASE COUNT          194 a          133 c          120 g          187 t
ORIGIN      
        1 ttgctcttct tggtttaaat ttagtgtcgc aaataaaatc attaaagagt tgcatattgt
       61 tctatggcat agagacctcc tgttttaact ccctttcctc tgaaagccaa gtacttggaa
      121 ttggggttac tgcttcagct gtcactacaa aatacccttc cttttattcc cagcatctga
      181 agttacagaa cgaattgcag ctagcagcag ctcaaagtct gaggtcaaag aaaagacaaa
      241 acctaacaaa gaaattgatc ctggggcacc tatggaattc tataatcaga cccatattct
      301 agacacaagc accctcagca aatcgcctct gaaatgtaaa aatttaattt gtcaacatgt
      361 ttacatcata tcttcaatca ctgtccaggc agtggcactg tgtggggaca cagggctgga
      421 gacgccaggc acactgaaat gagaagacgt ggactgatta gagttcactc tgggtagaat
      481 tgtctcggac agctcagcaa tcagattatt aactctgata ccagatactc tatctcttca
      541 ctgggattag catgaaaatt ttgatatgga tcgataagca atctttcctt tataaagaat
      601 ctctgcaagc ttcattaatc tgtgtgtatg ttta
//
LOCUS       KCLJ01003515             460 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 391940cal ultra-conserved element locus
            uce-1394, sequence.
ACCESSION   KCLJ01003515
VERSION     KCLJ01003515.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 460)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 460)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..460
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="391940cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>460
                     /note="ultra-conserved element locus uce-1394"
BASE COUNT          146 a           90 c           76 g          148 t
ORIGIN      
        1 aagagtgaaa gaaaagactg gtatttcagc cattgtgctc cctgctaaag cactgtgcca
       61 actcatcttc caacccatta tatgaaattt aatttaacct gctatgcaat taattcagat
      121 gttcagccta tttttctcat ggcagaatcc ctcacacaat gccttattta aatattaatc
      181 agtcctcttt caattaggac taatttgctt cacagggttt ctctcatctt ctgattgcag
      241 gaaaatggag gtaacttgca acgtttgagg ataattaaca tggtattttt ataatactga
      301 tacatcaaat gggaccttaa tgaaccccgc tgattccatt tagtaaagca tgcctcaaag
      361 ttataatcaa gaggaaagcc attgccatct gtttaaaata ctaaggagca caatttaaac
      421 agaggatagt tatttcttta aactgtccat tgtaggggtc
//
LOCUS       KCLJ01003516             667 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 392047cal ultra-conserved element locus
            uce-784, sequence.
ACCESSION   KCLJ01003516
VERSION     KCLJ01003516.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 667)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 667)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..667
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="392047cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>667
                     /note="ultra-conserved element locus uce-784"
BASE COUNT          182 a          160 c          128 g          197 t
ORIGIN      
        1 aggctgagga caaaattaaa gactcgagtc agaagtttaa tgcctgagtg ctcgttctga
       61 actgtgacct aaggtttggc tgggcactaa ccacagcatg cctcatcagc tcctgtcacg
      121 ggtacctcag ggcatacctc cagcagggag ccagctccag agccgcatcc tccaccacca
      181 gctcgctcac acactactga gaccctgccg agaaatcagc atgcaacccg agaaagcatc
      241 ctttcctctg gaataaaaat taatattact tgtcatattt catgtctgag ctcttttcat
      301 gctttatcct ctgtaatgag ggctaaatta ccaatattag tagattttca tggctagcac
      361 agaaagagct gttaccagaa taaatgtttg cattgcttct gttggacaca ggctttgcta
      421 atgcagcttt gctaattatt tctaaatagg caataatctg catcccctag tgctgggtag
      481 tggattggcc acgtacctgc tatttccctt atttacatgt tttacaactt tatcaactac
      541 actaattaca ctctgaacac tgtttaaaat tttctgttaa tagagataca atgatgcacc
      601 agaggatgtg tatttatgcc ataattacgc ctctgttcct gcgatgcagt ctccaattag
      661 ctgtcga
//
LOCUS       KCLJ01003517             550 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 392158cal ultra-conserved element locus
            uce-6270, sequence.
ACCESSION   KCLJ01003517
VERSION     KCLJ01003517.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 550)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 550)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..550
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="392158cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>550
                     /note="ultra-conserved element locus uce-6270"
BASE COUNT          166 a           88 c          106 g          190 t
ORIGIN      
        1 aaagaaaagc ttaaagaaag attattgaag gccatcacat atgccaaagg atttggcatg
       61 ctgtaataag aaaagggatt taaaaatgat ggtgatgatg tccctgtcca aaaaggccat
      121 aagatagtga gctacagtag tcacctgtgt ttgtgcctcc cttctttact ggggacattg
      181 ggctggaaca gcagatttca gctgcttata tgaacaaaat ctttattttt tcttttagcg
      241 tgaaagtgtt acatattctt tcacttgtat gtacagagag gttttcctga atatttattt
      301 taagggttaa atcacttttg cttgtgttta ttactgcttg aagttgagcc tttttgagta
      361 tttacaagaa aacaaactgt actctcccaa ggaaaatatt gccatcattt gtagaccatg
      421 taaccttcaa gtatgtgcta tatttttgtc cctgtatcta atcaaatcaa gaactgtact
      481 ttttgaagag tttgcttttg aaacttgaag tcttgaaaaa cagtgtgatg caattactgc
      541 tgttctagcc
//
LOCUS       KCLJ01003518             649 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 392268cal ultra-conserved element locus
            uce-3250, sequence.
ACCESSION   KCLJ01003518
VERSION     KCLJ01003518.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 649)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 649)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..649
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="392268cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>649
                     /note="ultra-conserved element locus uce-3250"
BASE COUNT          188 a          132 c          153 g          176 t
ORIGIN      
        1 gagtacacat gaccatctcc tgatgtgatt tacaagcaga ggagaaagag attacttaca
       61 agacaatgag aagaaatgca aggcctcttt tggcccaaac tccctgagca cagtgggctc
      121 ctgttttcca tcaaacccat ccagagctct gcagaagaga aagtttcatc cgcatgtgcg
      181 tgagcatgtg tacgcgcgtg ttctaagtgt tttgcattat gtgagctctg accttcagag
      241 gggaacagaa ggaatatttt cccccctgag gctagagttg tcagtgaaat gtctgtcttc
      301 cttaataatt tcaatccggg tgacagggga cagggcattt tgctctgaac gaacgtactg
      361 taaaaactgt cagatagaat ttgtctcaag aagcaacatt tctatccatt cggggtcata
      421 attacaggca tcttatgacc tgtggagcag tttttctcaa ctgaaaaaaa ggagtcctaa
      481 aataggtggt ttggtcttct gcagagcttt ggattgaacc taaatggaat ctaacaaact
      541 ctgcagcaga atgctttctt ctgtttgctg gctgcatcca gaacaaactg tgcactgaag
      601 tgacgtagca gaaaagatag aaattgccat tcactgggct ggagtaatg
//
LOCUS       KCLJ01003519             482 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 392375cal ultra-conserved element locus
            uce-6079, sequence.
ACCESSION   KCLJ01003519
VERSION     KCLJ01003519.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 482)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 482)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..482
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="392375cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>482
                     /note="ultra-conserved element locus uce-6079"
BASE COUNT          127 a          114 c           99 g          142 t
ORIGIN      
        1 agaaggcaaa taactcaagg ccattccttt aatgatttaa aattactgag tgtcagccaa
       61 cattcattta tatatgggca tatgcacaag aacttaccat tttcactgtc ggacttgttc
      121 tcgtgttcgg tatcagtcag agtgagggct gagttggaac ggctcgacag acaggaactg
      181 cgccctgatt tgacccccct gccccaaagt ctcatggcat gctctggaga catcactcct
      241 tcattttcag tatcagcatc tgaccctgca ctgatagagt aacctctgtg ggggagcccc
      301 atttccgcac aaaatgccag tcctcgacga gctgctggtt cacaaactcc taactgcctt
      361 agggtaaaat tctgtcctga ttaggggaaa agatgagaaa ttttttatta aattgtctta
      421 gatgtgtttt gtcaaaactc cacctgtatt acaatcaagt ggattctttt gtctccagct
      481 ct
//
LOCUS       KCLJ01003520             428 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 392488cal ultra-conserved element locus
            uce-3060, sequence.
ACCESSION   KCLJ01003520
VERSION     KCLJ01003520.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 428)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 428)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..428
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="392488cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>428
                     /note="ultra-conserved element locus uce-3060"
BASE COUNT           77 a          127 c          117 g          107 t
ORIGIN      
        1 ccgctcgcac aggtatcggc tgacgctgcc gtggcacgct ttatttcaaa gaagtagcgg
       61 taacaatggc tcacagtaat aacagcgctg ccgcatcccc cgggggaagg cacagaatgc
      121 tatctcgcca catgatctca tttcttttaa gctctgcact aaccgctgac atatcgcata
      181 aatgcctcct ttattacctg ccagtgattg tcttctgtgc tgggaatggc ccccggaacc
      241 caggtcctca tgccagccga gctgcctgcc tgtgaatttg tctgtgtctg gcgctccggg
      301 aggcacctga gcatcctcgg ttacggcgct ctgaggcgcc tttgttcagg tgctcgccgg
      361 gggccggcag ctggcaccgg ccggggctct ggtgctctat ttgccaagtc ggtaatttgc
      421 cattttag
//
LOCUS       KCLJ01003521             757 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 392596cal ultra-conserved element locus
            uce-7027, sequence.
ACCESSION   KCLJ01003521
VERSION     KCLJ01003521.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 757)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 757)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..757
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="392596cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>757
                     /note="ultra-conserved element locus uce-7027"
BASE COUNT          233 a          153 c          161 g          210 t
ORIGIN      
        1 tgatgctgca ggaggaataa cttccagctt caagccaccc acagaaggtg cagtgtctgg
       61 tttatgtgct ttgtgtacat gctgattata tattattcac caacatacta actacaaagg
      121 cagatagttg ccatgtttga taggttaatt ttaaaggggt tttgttagca aacaagtctt
      181 agaaataaag cagcccaaat ttggttccag ctttcccagg gaggagctac ttgcctcttc
      241 aacaagaatt caaatgaatt gaaaattcct ttagaactga cagcccaagt gtaagaatga
      301 taaacggctt tggccttgat gatttttatt aagcactaaa tgtcacattt aacctgcatt
      361 actgaaagca attacccatg tatcaacagt caagcagtgc agagctagac gcctgaagca
      421 gtagcattat gctccatctg ggaataagga ttttcaatta gaaggcaaat agctggagag
      481 gggatcaagt cctccagtgg ctcccaaagg aggtctatga gaagcaaagt cttcatatcc
      541 aagtaatcgc aggcaatgtc aacagagcat tccaaaccat ctgctgccag agtagcgttt
      601 actttatcaa atctcaatat ttacagaaca ctgatcagct catgggacca ggatggctca
      661 ctgccagggt gttctgggaa attcatttta aggtgtgttt cagtaggcta attaatttac
      721 aagcacctgt ttcatcactg ggagctgtta gcacacc
//
LOCUS       KCLJ01003522             517 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 392703cal ultra-conserved element locus
            uce-3527, sequence.
ACCESSION   KCLJ01003522
VERSION     KCLJ01003522.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 517)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 517)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..517
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="392703cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>517
                     /note="ultra-conserved element locus uce-3527"
BASE COUNT          191 a          110 c           80 g          136 t
ORIGIN      
        1 atagatgctg ggtagcttat gtgcaataca taaatatgaa ctatctgtac atgtttgcat
       61 atctaataac tcagaagaac aaagtaaaac ctgacggttt taatagtgaa gtaaaaacca
      121 agactgaaca ctggcaacaa ccttgtgtat gaactattta cagagaacag gcaccacaac
      181 actagtctaa accgtatttc acaagtttca tacatcacaa aaaccccttc cattataaca
      241 cagaagtgat attaccagac aagcatcagt gaagaatact gccttttcta gagttgttat
      301 tgtacaatgc tgtagataac gcagcccatg caatacaccc aagaacacta cagtcctata
      361 cccaagtaca attaaagcag ccctccaaga gtggttccag ctaccattta agtctacagc
      421 agccatgtta ggtatggttt tccatgcaga acggttacat ttaaaactaa aaattaattc
      481 ctaatattct tttgaacttg gaacacacag aacataa
//
LOCUS       KCLJ01003523             678 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 392797cal ultra-conserved element locus
            uce-3662, sequence.
ACCESSION   KCLJ01003523
VERSION     KCLJ01003523.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 678)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 678)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..678
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="392797cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>678
                     /note="ultra-conserved element locus uce-3662"
BASE COUNT          233 a          124 c          117 g          204 t
ORIGIN      
        1 gcactttagc ccacagaaat tagagatatt aaacctaaat cattaccgcg gtttttgcaa
       61 tgcaaattca cttctgggca catttttaaa tggcatatag tatttcctcc aaattctatt
      121 agataatgtc atggactatt acactgttgt cattcagctc attttgatga aaaagcaatt
      181 acttattgca gattaatgca atgactggcc ataatcacag taggttaggt tgagagttta
      241 ttagaaaaac acaagccatt taaattaacc caaatgacca gcatgtcagt tcaaaagaaa
      301 catgtgcttt aatttgttaa actgtaacct ttgctatatt agaaaaatac tttgacacaa
      361 acactttaca aatgtcagca gaaaatccat actccatttc ttcacattgg ttttgtgaca
      421 cagtgtttgc tgatattcgt caagggataa gttacgattg atttccttcc acccttactc
      481 ttctcttgta ttatagggag ttaaagggca aaaatgacct gcccagactg ttcatatgga
      541 tatgctacca taggtaaact taactgctgc ctggaactta aaggtcaaga tttcaacggt
      601 aacggagaag gccagagcat ctcaagactg aagagcaaaa gtaatgaaga aaacaggaga
      661 acacttgatt taaagaat
//
LOCUS       KCLJ01003524             751 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 392908cal ultra-conserved element locus
            uce-2655, sequence.
ACCESSION   KCLJ01003524
VERSION     KCLJ01003524.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 751)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 751)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..751
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="392908cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>751
                     /note="ultra-conserved element locus uce-2655"
BASE COUNT          225 a          135 c          176 g          215 t
ORIGIN      
        1 acccccaggc ttcccaacag ctctttccag caggagctgt ctcggagctc ttagcatcac
       61 caaataattg aggttgtcac atctcttgtt cattgttttt tccaggcctg gaaaaaatgc
      121 aaatatttca ttgtagtcat taattttccc atccttttct tcaagcatct cattggtttg
      181 atctgatgaa aagggctgaa ggcattattg caaacacagt ggcatccagg ttctgcctat
      241 agtggggaag aatctcatca gataaagtct cagggaggtc atcaatcaca gttgctgaca
      301 accattttgc cttcgtttgt tacagatgtg aacatgctta attatttgta gtgtaattag
      361 ttcatgaaat gtcaggaaat gtcaaactgt gttcacagca cagatttttg cagcaaagag
      421 caatgagagc aagtgtcagt gggagacata gaggactgat ggggggaact gtgtctgcag
      481 gcaaatgagg gaaatggctt gggggacaaa tgagggtcaa aatattaaga ttaaagtttt
      541 gaaagggaga ccttcaacgg agccaagtaa agtgggacgt gaatgatgtt accatgcagc
      601 agcatttcaa gcacaggtct ggagtgggaa gagggaagtt aaatcaatat ttactcttat
      661 tttaatttga tttgtgtaaa cattggcttt tgacggcagg tctttagaag aaattcagca
      721 aaattccacc cacaagtctc tgacactgaa a
//
LOCUS       KCLJ01003525             714 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 393016cal ultra-conserved element locus
            uce-6110, sequence.
ACCESSION   KCLJ01003525
VERSION     KCLJ01003525.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 714)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 714)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..714
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="393016cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>714
                     /note="ultra-conserved element locus uce-6110"
BASE COUNT          221 a          135 c          128 g          230 t
ORIGIN      
        1 gatcaatggt tgttcccttc ctcatatcaa tttcaaagag ccaggaaata agactagata
       61 cgcatcattc tagctacaaa ataaccaaag taaaagcaat taagcaacaa taagaccaca
      121 ttacacaaat ggaacatcat gctctcatct ggtttaacta ttacaccaag ttttaactgg
      181 gatgttggtc aactttaaaa accgtggtaa atgtgaatat gtagttgaaa tagtttttcc
      241 taattttttt tcctctctat gctggatatt agaacttgga gctatacttg ttacaataca
      301 gtgtcgcaca tctttctact agaaaaatta ataaagatcc tttacccgtc tctttaagtt
      361 aaacgtgtga catcataaag ggtgtcaaat ggctggatgg ttttacagtg cacacttatt
      421 atatattgta atatggagtt ttgtccttga cagatctgat ggtgatttct acattatttc
      481 ctttcttcac ctcttcttcg gtggattagc tgtgcgaggt ggagtgactg gacgcccaga
      541 attcagtcca ccatactggt acttggcttt cttttcagat ggtttcaata tcttagagaa
      601 aataaagaag ttcctttgag tcagcaataa gcccacatga aaccttgttc agcaggaaca
      661 atagagtgag gacgatgggg aaatcacatc ataaccctat tcttagctct acat
//
LOCUS       KCLJ01003526             732 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 393123cal ultra-conserved element locus
            uce-1561, sequence.
ACCESSION   KCLJ01003526
VERSION     KCLJ01003526.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 732)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 732)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..732
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="393123cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>732
                     /note="ultra-conserved element locus uce-1561"
BASE COUNT          205 a          129 c          154 g          244 t
ORIGIN      
        1 agatgttgat gcactgaatg attccaaaga ggcttttttg tcacagcatt ctgtacactt
       61 aatgttttta aaaatttgtc tgatcccagc ttgagttact atgtattgtc gcacctttaa
      121 attgaattgg gctttcatgt tcctttaggt ttcccttcat gcacacatta atatttcata
      181 tttatttctt cctcttcagg tgcaatctag ctcctgtggt ggagtatgct gccgatgtgg
      241 gaactaaatc tgattttatt accatgaacc catcagttgt acaaagagct tttggaggct
      301 ttcggaatga gagtgacaga gaaaaatttg tgcatagact gtccatgctg aatgacagtg
      361 tcctttggat cccagctttc atggtcaaag gtggagagaa gcatgtggaa tgggttaatg
      421 cattaatcct taagaataaa ttgaaagtgc gaactgccta tccatcactg agacttattc
      481 atgctgtcag agggtaagtg tatggaaaag actggtctgt cctcagcaca atgataacta
      541 gaattcctag caggcagatg gtatttcccg atgtaatgga ttgcatttat ggcaggtttg
      601 tttggtaata aatgctgtca tttagctagc tctgcaactg aaatgcgcac aataactttt
      661 ccagtatcat cattgtgata agctaatctt aaaaatagtc tgaattcagt atcatgaaag
      721 tgctacatgt ct
//
LOCUS       KCLJ01003527             336 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 393234cal ultra-conserved element locus
            uce-6174, sequence.
ACCESSION   KCLJ01003527
VERSION     KCLJ01003527.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 336)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 336)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..336
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="393234cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>336
                     /note="ultra-conserved element locus uce-6174"
BASE COUNT          101 a           61 c           63 g          111 t
ORIGIN      
        1 aaagactgat cagtaaaact tcctgagtta actgattgtc ttatgacata atgcacacta
       61 tatatccact gtgttttatg aaaatgttaa cccaatactt tcaggctggt gcatggcctc
      121 taactcaggc tccttcttct acatttgcaa ttcctcagga actggaaaaa agtgtacaga
      181 tggtaggtta gtaggaggct tcctgtaaac atgtggaaaa tgtaaaataa ctccaaatgc
      241 ttgagctgct ttattttgat tgtaaattat atctatcatg tttccagtca atgtggaagg
      301 gtcacccaaa taccttactg tatgtatttg tgtagc
//
LOCUS       KCLJ01003528             730 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 393341cal ultra-conserved element locus
            uce-6482, sequence.
ACCESSION   KCLJ01003528
VERSION     KCLJ01003528.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 730)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 730)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..730
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="393341cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>730
                     /note="ultra-conserved element locus uce-6482"
BASE COUNT          218 a          152 c          126 g          234 t
ORIGIN      
        1 ttacaagctg agacagaaaa caatgtttcc attcttcaag caattaatta ttgtgattaa
       61 tgtattcccc cttctctaag cacaattctg ccagacagag tcagcccatt gacatattgt
      121 agaattataa tgcatatcta attaaaggtg acctgaaaag gcagggtgtt tagccttccc
      181 tgtcaggacc aagaaactgt taatcagaaa gtgcttgccc accccacctc ccttttttta
      241 tttttgtgct aatttcaaat cttctccctg catcagtgag cagatgagat cttcagccag
      301 ctttcatctt tcagaaaaat gaatagtgca gaaagaacat tatcaaatga gctgttgaag
      361 aagtcagtga atatgtcatt gagtgtgact gcttccagaa tgaatttaga tttatctctg
      421 ttatctcccc tctcccggct cactctccac actctgtttg cactcagtcc acacgtcaag
      481 ctgggtgggt cataatgaat cataagggac agttacttgt ggaatggtga caggtccaat
      541 tgtgatacaa cttgttctgg aattaagttt gttaacatta taaattgtct catttgacca
      601 gaggtttaaa cacctagaag cttttatgca tgcaatttct taaagtattt cttttccatt
      661 aggcagctgc tgctttaaaa tattccacaa atgaaattgt tttatcacat caatagctgc
      721 acaaaacaac
//
LOCUS       KCLJ01003529             528 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 393450cal ultra-conserved element locus
            uce-178, sequence.
ACCESSION   KCLJ01003529
VERSION     KCLJ01003529.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 528)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 528)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..528
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="393450cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>528
                     /note="ultra-conserved element locus uce-178"
BASE COUNT          161 a          120 c          112 g          135 t
ORIGIN      
        1 tctataaaat gcctttccct gtggcttaaa gtaaagattt ttaaaataaa ttaatacagt
       61 ttatgttggg catctaccac ttgaagggct aatgattatt gactaccctc cagcagacat
      121 cagggagtct agcctcaggc ccttcccgct cgccccaaac atgccgaatg ttaacacatg
      181 tttctagatc ctggctggga ttggacacaa acaaggcagt cagaatggac catttagtgt
      241 acaagccaag atgacagatc tctgcttaat acaaggaaga caaaaattcg tatcttattg
      301 aaaaaggcag aagagccccg ggtgctttcg ctttgtgatt ctgcagcaaa aagtgggttg
      361 tgtcaatata agtctatgtc acccgctcgc agctgccaca ctgaattgac cctgctagct
      421 gcagacagaa aggccttcca tttccaaatt ctctctaatg ctcatctgcg agagtgagca
      481 tgaggtggcc caacaagtta ttcctaagta cgggagagaa aaacaaaa
//
LOCUS       KCLJ01003530             642 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 393560cal ultra-conserved element locus
            uce-6940, sequence.
ACCESSION   KCLJ01003530
VERSION     KCLJ01003530.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 642)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 642)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..642
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="393560cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>642
                     /note="ultra-conserved element locus uce-6940"
BASE COUNT          214 a          111 c          122 g          195 t
ORIGIN      
        1 gaacttggaa aaaaagatgt ccttggagtt gcttaaagat aaattaaaat taataacttg
       61 caacgtagat cactgtgggt ctttggtaac cctgttgttg atggtgacat cagacttttg
      121 tttgccaggc taaataaacc tttatttctg catttccata cctatccttc atattttatt
      181 ggctatacag tcagcagaag acaccaaagc cttagcaaca agatcttctg atgtacaaac
      241 aaaatgcatt taatttgact cagtgtatta caagcattat aatccctctt ctgatttcaa
      301 catgatcgac taatctcatc tgctcagagg gataagcctt gtctcagcca tgatgacagg
      361 cttagagaat gataaaaatt agggcattct cacagattat atactgtaac aacagataag
      421 gcttatgaat aaagaattga ctacaggtgg ttatttgtag aaatgtacta gattaagggg
      481 ttaatgttag agaagtacaa tgtcatttat agttaaatca tagatacaca caagtgtggg
      541 aaaatctttc tcgcctgtgt aaacatcagg ggagatgaag caaatttcat agctcgtttc
      601 acaagcagtc agaatgagca agtacgttct cgggataacc ct
//
LOCUS       KCLJ01003531             563 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 393668cal ultra-conserved element locus
            uce-136, sequence.
ACCESSION   KCLJ01003531
VERSION     KCLJ01003531.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 563)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 563)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..563
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="393668cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>563
                     /note="ultra-conserved element locus uce-136"
BASE COUNT          161 a          124 c          130 g          148 t
ORIGIN      
        1 gctaaacggg cctcttgtag attctgcgag tcaacaactg gctaagcagt ttaaacctct
       61 aaggaaggca taaacgttat aggcaaatct aatttaagct tttaaaaata ttatgggcag
      121 gtgtttaagt ggcgggcaca ggggggctgg gcgccgcttc ccaggcgggt tttgttcagc
      181 caggagaggc caaataaaca gcatctgggg attttcaatt acagaccttc acccagcatg
      241 cctgcactgt aatctctacc agatgaggct caggcctcac tattttcaat aattcacaca
      301 ctgtgtacac ataacatgac aataagggca ttcatgcaac cgcctgattc gcacatcaaa
      361 gctcccaaat ggccagctgt aagcatgctt actgctgaat aattcattct tttcacaggc
      421 ttgaaaaaac gctcagcggg agttggcaag cttgtgttct ttcctgtgtg gtatgctaaa
      481 ctcaaatttt gaaagaggta cagagagtca gagatacaac tatttaaatg tgcatatgcg
      541 agctttcgga tggctgctca cag
//
LOCUS       KCLJ01003532             691 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 393779cal ultra-conserved element locus
            uce-4754, sequence.
ACCESSION   KCLJ01003532
VERSION     KCLJ01003532.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 691)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 691)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..691
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="393779cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>691
                     /note="ultra-conserved element locus uce-4754"
BASE COUNT          199 a          136 c          166 g          190 t
ORIGIN      
        1 aaactggcca tgtagccatc aactgcagca agaccagcga agtcaactgc taccgctgcg
       61 gcgagtcagg gcaccttgca cgggaatgca caattgaagc tacagcctaa ttattttcct
      121 ttgtcgcccc tcctttttct gattgatggt tgtattattt ttctctgaat cctcttcact
      181 ggccaaaggt tggcagatag aggctactcc caggccagtg agctttactt gccgtgtaaa
      241 aggaggaaag gggtggaaaa atcaactttc tgcatttaac tacaaaaatg tttatgttta
      301 gtttggtaga ggtgttatgt ataatgcttt gttaaagaac cccctttccg tgccactggt
      361 gaatagggat tgatgagtgg gaagagttga gtcagaccag caaaaaccct ctctgggtta
      421 cagggaagtg atcctatgca ggaggtggaa gtgtctaaac ttcctcattt ttattttatt
      481 acaatggcct tggattgtct gacctcagta gctgttaaca ccatctgcat caggccctac
      541 ctagagcata tagctgagtg ggagtaaaca aacaagatgc acatgcctgt taatggccat
      601 gagagagaga gagaaatctg aaataaatct aaaagaacag taattcagtc agtgaatgtt
      661 aatgttggag ttacagaacg caatgggaag c
//
LOCUS       KCLJ01003533             760 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 393891cal ultra-conserved element locus
            uce-3845, sequence.
ACCESSION   KCLJ01003533
VERSION     KCLJ01003533.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 760)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 760)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..760
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="393891cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>760
                     /note="ultra-conserved element locus uce-3845"
BASE COUNT          265 a          158 c          124 g          213 t
ORIGIN      
        1 tttttaaagg tcttagtgcc accttttcag ctcatttgct cttttcattt accaagaaca
       61 tacaggaaat aaaaaacaga acattcctaa acaagacatt tttacacgtt atggaaatga
      121 cataacaaac accaccacag ttcaacaaag cagttatgag ccctgtagct ttttaagaca
      181 ttaaaaagag gcaaagaaaa ctcagatatt gcatgatctc aagctgtata aaatgaaagc
      241 tgctaatcta ctttccaagt gaaacattgt aggtgattgc tctaacctgg ggcacagtac
      301 attctctcta tggcatcgtt gtcacaggaa tcttcaacct ccctccacct gctaaaatac
      361 gttagctgaa tgtgtcctaa aaacaaaacg acaggagaaa tcaaaacatt tttcccttcc
      421 attttctgca gaagtgaact gtaattactc cttttgtagc taaaaacagt atcattaaga
      481 ataatggcat cattaagtac tagaagctat tactgggggt gaatttgctg cactgataat
      541 gaagctctag acaggaaatg aagatactaa ttacaagata aaacgcctac tcagttaatt
      601 ggaagcaaca gcgaataaaa agaaatgcat ttgcaaaagt tcctgacctc tatcattcaa
      661 taagatgttg tttgggttca aatcgcggca cacaattcct tctctatgta aagcatcaag
      721 ggctaccacc atttcagctg cccatctttg aatgcaatcc
//
LOCUS       KCLJ01003534             499 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 394002cal ultra-conserved element locus
            uce-4005, sequence.
ACCESSION   KCLJ01003534
VERSION     KCLJ01003534.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 499)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 499)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..499
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="394002cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>499
                     /note="ultra-conserved element locus uce-4005"
BASE COUNT          154 a           86 c           78 g          181 t
ORIGIN      
        1 tttgaataca aaactgcgtg gttttagaca agtgcccatc ttatttttca gactcttttt
       61 tctttgctgc tgagagccac acaatgtact tccctgccag ttactaaaat gcttctaaaa
      121 acttgaagaa ttatttgaaa aagggcattc ctattcctta tgcataaaac atgcatgcat
      181 attcatataa aacatttaga aaaatttgta ccagttataa ttagcatgtt ttgtgcatct
      241 attttctttg ctattaaata acaaatttgt ggtaaccata gcaactggaa catcacatga
      301 tactggtgct attttgggga taacataagt acctttctta aagaagcatt cacacctcta
      361 agctatgaat tttaataatt tttacaataa agtatttgtt gggtagattg tattcattcc
      421 tcactctaat gttgatttaa tgtggaatgc attgcagtgc ctgtgaccac ttaaaagcag
      481 tgatgagccc tcttgtttt
//
LOCUS       KCLJ01003535             783 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 394110cal ultra-conserved element locus
            uce-287, sequence.
ACCESSION   KCLJ01003535
VERSION     KCLJ01003535.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 783)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 783)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..783
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="394110cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>783
                     /note="ultra-conserved element locus uce-287"
BASE COUNT          248 a          155 c          141 g          239 t
ORIGIN      
        1 tttttcatct tttgcacatg aacttctctg ccttggtttt attaaatgga aatgctacat
       61 aactactgcc aggagactct ctggaccaga agcattaact agctcaaatg agaaatacaa
      121 actaaaaagc tgtctgtcca ttttggaaac atgcagataa tgtgtgtgtc acttgaaatt
      181 cacatgcatt tgggatcagc aaagaaaagt aatatacagc aatgatatct ttgatcatcg
      241 aaagaactca gaaacatagg aactgtgtcg agtgtggtta tcatcaaccc attttctatt
      301 cccagtgcac aaatcatttc atgcattcta caacccaagc cacgatgctg ggcttcaaaa
      361 gcaatttcag cagcaaaata aggtgctttt cttcaatttt caagccattt gtacgaggtt
      421 agtgttgttt acccacctgg tacactgata tttacatacc cctttaaaga aaattggtag
      481 gtatgattta tggagtactg taagagcaca attttccatg tagtgcacct aatctgaaag
      541 ggcacttgca aaggtcactc tggccataca aataccaagt cttctctttg gaataagtta
      601 ggatattcat ttttcttgga aaatgtcagc agtaccctac tccaggggtt agtttatgca
      661 gataaatgcg taagccttta atcttaaggc aaaaatactc tacacaaatg taagagaagt
      721 ccatctatca ctgttaagac ctgtaatttg tttttattta aatcccaagc cagggcagcc
      781 tgg
//
LOCUS       KCLJ01003536            1005 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 394221cal ultra-conserved element locus
            uce-2053, sequence.
ACCESSION   KCLJ01003536
VERSION     KCLJ01003536.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 1005)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1005)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1005
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="394221cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>1005
                     /note="ultra-conserved element locus uce-2053"
BASE COUNT          312 a          201 c          199 g          293 t
ORIGIN      
        1 aacaaaagac agagttgcaa aagctatttt cctacagcat gtgaagaatt caaagtgagt
       61 tcttgattta ccttctataa ctgctgctat agcctttacc tcgtggtgaa gggccatgta
      121 cgaatctaca tgtgttccca tagaggcagt tgccagtctt cagccagtta cggcactgtg
      181 tctaagagac agacattact gggtgaattt cacactcctt tctggaaata ccattgggtg
      241 tggcagaaca aacaaatgac tccacattaa gtcccattta tctgtaatcc accagtaata
      301 taattgatta aagagcatca ggtctgccag aaaaaattta agttggtgga aacactatga
      361 atatgcacag tactactgct ccatccagaa gctggcacaa cacacggtat ttgaaaattc
      421 tagtattagc atgttgaaca tccatattca gtaacatctg agtatttgct gcttgtgagc
      481 tactctttcc caccatataa atcctggaaa agaagatgtc ggggtgggga ggaaaagaag
      541 aacactttta caactcacct ctgcagtact tccagtgctg ggtccaagcc tttcaaacac
      601 actgggtctt cgggatgtgc tatcggatat ggtcttggta ttttccactg tgaccttcct
      661 tctaattttt gacattttgt actacttcaa ccaaaaaaaa agcaaaactg taaaatcctt
      721 cagtttgggg ctttgacact gaactcacat gaataaaata cgagagttgc tgcagaggtg
      781 atgaagaaag aaaaagaagt cataaatgag tgaaatgtat ctaataacac agaatgcttc
      841 tgacttgaac tagtcagctg aacaccagta atgagaattt catttcattt tgctttgggt
      901 tcttcagctt ccccttggga aagatcatat gacatgttat tcatttaggc aacaaacacc
      961 acagaggaca gatgctttct ttcattgtgt atttttggtg cacga
//
LOCUS       KCLJ01003537             573 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 394311cal ultra-conserved element locus
            uce-4143, sequence.
ACCESSION   KCLJ01003537
VERSION     KCLJ01003537.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 573)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 573)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..573
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="394311cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>573
                     /note="ultra-conserved element locus uce-4143"
BASE COUNT          163 a          106 c          111 g          193 t
ORIGIN      
        1 tggacatgca acaggaactg tgtcatctca aatctacttg cagcttgctt tctaaaacca
       61 aaataacatt actcaattac tatcaaactt tatgattatg tttacaggtt cagtttctcc
      121 tcaagtctaa aatatccatt attatcagct cttgagacag agaatgtatt actgcctcca
      181 tagttctgct tcacatttgt tacaccagtc ctacgactta tatgttactt gatttaaaaa
      241 taatacaatg ctgccatcac ctgccgttgc tgggctgctg tggagaatgt ctggaatggt
      301 ctgaaggctc tgacctctgg tcaggagatc gtgaacgact gcggcggggc ctgtcatgtg
      361 atcggttgga atgatctgat gccagcgact gaatttctga aatgtctgtt aaataaaagt
      421 tgtttcatga aatgattgta atttaaatgg tggcatgacc tgcttaaatg ggaataagct
      481 tttttttatg aagatgttaa atctatgctt attattacat attcctgtaa gaacagccac
      541 tttttgaagg agtggatttc attacaatct tac
//
LOCUS       KCLJ01003538             707 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 394424cal ultra-conserved element locus
            uce-5401, sequence.
ACCESSION   KCLJ01003538
VERSION     KCLJ01003538.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 707)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 707)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..707
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="394424cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>707
                     /note="ultra-conserved element locus uce-5401"
BASE COUNT          200 a          132 c          154 g          221 t
ORIGIN      
        1 agtcactcag gaggttatct gggaggaggg aaatcatgag caagagaaac cagtggcggt
       61 caccttccat ttcaggctgt ggagactaaa atatttcctg ttctgtctca aatgaatatg
      121 tttcaatgtt caattcctgc tttgtggtat gcaactaaca gctgttgtga gtagcattgt
      181 tactgtattt gtttcatgtc acactttttt ttctttcctc tcctttgctg ttggcttcac
      241 ttctggctcc atcagagaga gctgcaggtc tttgctgccg cttagtagtc ccctgtcata
      301 aaggaatgcc aaggcttact gatctgtctg tcaaaaccaa agatgtctgg gaaattccac
      361 gagaatccct acagttgatc aagagactgg gaaatgggca gtttggggaa gtatggatgg
      421 gtatggagca aaataattac tctaaaatag ctcgctgtgt ggggattaca agatggaagg
      481 tgaaaaacat tgtgacccac aagtagtaaa gctcaaactg ttaggaatct ttggaatcat
      541 gtctttgact ttgaaattct ttaatcttca actttcacta taattgatgg caaaagaaaa
      601 ctgaaaatcc atgtttcctt ggaaggtctt gattttgaca aattaccact gtcttaataa
      661 taaatcaagg ctcgcatagt aatctcttag ctataccaag gagcctt
//
LOCUS       KCLJ01003539             542 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 394535cal ultra-conserved element locus
            uce-5672, sequence.
ACCESSION   KCLJ01003539
VERSION     KCLJ01003539.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 542)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 542)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..542
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="394535cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>542
                     /note="ultra-conserved element locus uce-5672"
BASE COUNT          175 a           94 c           87 g          186 t
ORIGIN      
        1 ttaagcagac caaacattcc cacttgcagt cttatttaca ttattaattt gcttagcaaa
       61 tattttttta atagctagtg ccaatagaag gagtgggagc cttgtttgga gagctcttgt
      121 gaagagtgct attttctcca gttcaagcag atgagcagac tgaaatgtga gttttcaggc
      181 acataataga cccttggctt atcaaagcct cttatctgat tgggaaaaaa atcaaaggta
      241 aacttcacag ctcatggaat taaaagacaa atgagatgtc ataattatca aagtggctaa
      301 tttagaaaat taagccattc acataggtga cataattgct tgtcacaatc actctttttc
      361 tcattagtcc tctcttcagt acctaccata cagtagaata ttctttattc ttggaaaata
      421 ttgcctatac tgtaatccct taatagtata gcccctgaaa ttagtgcaaa aatatattta
      481 atatcttcat tgatgtgata tatttgtatg attctctgtt ctcacattgt aaaatctagt
      541 at
//
LOCUS       KCLJ01003540             900 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 394644cal ultra-conserved element locus
            uce-3302, sequence.
ACCESSION   KCLJ01003540
VERSION     KCLJ01003540.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 900)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 900)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..900
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="394644cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>900
                     /note="ultra-conserved element locus uce-3302"
BASE COUNT          294 a          185 c          205 g          216 t
ORIGIN      
        1 cagaatgagg ccaatcagtg ctcacaagtc agtaatgggc catcattaga aatgggtgag
       61 aacggagctc ctggaaagca gaactttgaa caaatggaca cacaggaaat taaaagtgat
      121 ttgaagaagc ccctagttaa tggaatctgt gattttgata aaggagattg ttctcatttg
      181 agcaaaaaca ttccaaatca caaaacttcc aatcatgtag gaaatggtga gatatcttca
      241 gtggaacaac aagggaattt ggatgccacg cagcaagata ctgccaaagg tgatcaaggg
      301 gaaagaattt ctaatgggcc tgtattaact ttgagtagtt cacctgttgt aagcggtaca
      361 caggaggctg caaaactgtt aacccagcaa cttagtggta ccaacactga tttacctaat
      421 ggacctctag cttcaagttt gaattcagat gtgcctcagc aacgcccaag tgtagttgtc
      481 tcaccacaat ctacagcctc tgttatacag gggcatcaaa tcatagcagt tccacactca
      541 ggacctagag tgtcccagtc taccctgtcc tccgaagttc ggtctactaa tggcacagca
      601 gaatgcaaaa ctgcaaagag gccagcagag gataatgaca gggaaactgt tccaggaatt
      661 ccaaataaag taggagttag aattgttaca atcagtgacc ccaacaatgc tggttgcagt
      721 gcaactatgg ttgctgtgcc agctggagcg gatccaagca ctgtagcgaa agtagcaata
      781 gaaagtgctg ttcaacaaaa gcagcagcat ccaaccacgt atatacaaag catggtcaca
      841 caggtatgtt gcagtgttct gtttattctg actgtgattc tgactaatac tgtgaaataa
//
LOCUS       KCLJ01003541             570 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 394757cal ultra-conserved element locus
            uce-1702, sequence.
ACCESSION   KCLJ01003541
VERSION     KCLJ01003541.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 570)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 570)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..570
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="394757cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>570
                     /note="ultra-conserved element locus uce-1702"
BASE COUNT          162 a          140 c          103 g          165 t
ORIGIN      
        1 ggctctgttt gcaaaccctc cccacagaca ctacaatcct ccgtggtaca caaaggactg
       61 aacatctcag ctctgattcc tatgattttc aattaaactt ccttttctgc tggaacatgg
      121 atcacctgct ccaccacact tctgtattat taatttgtta gcttgctgga atcacagttg
      181 aaaacctttc agccttggtt tgcagcaata aattcaactg acagctgaaa tttggaacgc
      241 tcacttaata ttgattctga atgtaataac aagcgacatg accttttgga gggtgtaaaa
      301 tatggctgcc acaacatctg tgccacattt cttgctgtgt agtaatatgc tgtaacagca
      361 cggagctggc actgaagtta agctttatta tcaagcagat ctctccatct ctcgggcttc
      421 attaaaacag aactttactc ctcaccccca aaatgcttcc cacatccaga actcgtggat
      481 acatcactgt ttctgagacc taatttatcc tgcagtaagg aaagggattg ggatggctaa
      541 aagagacccc ctgtgtcaaa cacagcagtt
//
LOCUS       KCLJ01003542             405 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 394860cal ultra-conserved element locus
            uce-7867, sequence.
ACCESSION   KCLJ01003542
VERSION     KCLJ01003542.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 405)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 405)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..405
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="394860cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>405
                     /note="ultra-conserved element locus uce-7867"
BASE COUNT          106 a           92 c          114 g           93 t
ORIGIN      
        1 tccatctgct ggaatatttt ccatccctgg caatcatttt ccaagggaaa gcaggcatct
       61 ccaaggaggt gttgggcggc agacggacag actccctaaa tgctacccct ctgaatggaa
      121 gcccttcatt tgtgcatatg caattaagca gccttagaag gaagaaagct ccaaacggga
      181 taaaaggaac ctttaatcaa gaagctgaac ggtctaattc aggataatag aggggtcctt
      241 agtgtttgac acaggagggg tgggggtgct ttttgtctct gcagcgttgg cttcatgatc
      301 taacgacccg gagcaaaaga gcaggaatgc aggacactgc tacttgacct ccccgtgtca
      361 cggcccaggg gtcgggaaga gaggcagggg tttgtgtccc ttagc
//
LOCUS       KCLJ01003543             513 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 394965cal ultra-conserved element locus
            uce-4739, sequence.
ACCESSION   KCLJ01003543
VERSION     KCLJ01003543.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 513)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 513)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..513
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="394965cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>513
                     /note="ultra-conserved element locus uce-4739"
BASE COUNT          169 a           96 c          100 g          148 t
ORIGIN      
        1 tcataatcat ctctaaatct aatgggacac tttcatcaca gatgaaaatc ttcagcgctg
       61 ctcaaatgga aatcaaggaa ttattacaat cccgtggtct ggcttgcagc aggcattaat
      121 cagaaatcat aataaatcca cacagcacac agcacattag tcaggcgctt ttgcatgata
      181 acgacgttga ctaatgggct ccgagttgga agggtcaatc ataaactcat caaatgcttc
      241 atttaatttc ttaatttgga caaacacgat ttgtttatgg gaaagatatc aggtgttctt
      301 gaatgaataa tggctgtgaa accaaagtcc attaatcagt gcttgattac aaatgactcg
      361 gagattgttt gttctaattt cattcatttg gggcaacaaa gagaacacga gcgagcgaaa
      421 gcacttggcc aaaatggcac acttagttct ccatgtttgt tgtgataaat gggctttcaa
      481 taactaaaac aagggggtta ttacccatat taa
//
LOCUS       KCLJ01003544             562 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 395074cal ultra-conserved element locus
            uce-6777, sequence.
ACCESSION   KCLJ01003544
VERSION     KCLJ01003544.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 562)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 562)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..562
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="395074cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>562
                     /note="ultra-conserved element locus uce-6777"
BASE COUNT          171 a           99 c          117 g          175 t
ORIGIN      
        1 aaaaagctaa aactctccag aggatggctt ttgtttccta tgtgtctcaa agcaactgct
       61 ttcctctctt tgccaccttt tgacatgctt aaagcgagga atgattgaat atctgattaa
      121 ctccacgtaa gaagcatttt tgcccagttt tctgacgaga tgctgaacca gtccaaatcc
      181 tttgagtctt atgtaggagg taatcccacg atccaatgtc agaataatcc ccccaagaca
      241 gcttaaatat ttgtagttct ttcttaaatc aagaaatccc ttggggttta taccaatccc
      301 aatttaaaaa atgacttgac ctgaaaaccc tggaggaatg tttgaatgag gttgtcttgc
      361 ctctggcttc ctggtattct aataagacgt gaataagata tacaaggtcc taatttataa
      421 tgtgatatga aaattataca ttcagtgaaa ggctgggggc aaaaataagg gatggcaatg
      481 gtgatagaga cagcatttat tgtgattact agaagggggc cttagtgggc tgggattatt
      541 gtactttaag tgaaattgat tt
//
LOCUS       KCLJ01003545             594 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 395181cal ultra-conserved element locus
            uce-1913, sequence.
ACCESSION   KCLJ01003545
VERSION     KCLJ01003545.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 594)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 594)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..594
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="395181cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>594
                     /note="ultra-conserved element locus uce-1913"
BASE COUNT          115 a          172 c          118 g          189 t
ORIGIN      
        1 ttttgcttct ctcttttttg aaaaatcccc taatttttac tctgatctca gggcctaagg
       61 tgccacccca aaataaaatt gtatcctccc ttccccaggt cccaggaagt tgttttcctc
      121 tgccttctgc agtgcaggtt aagccaatgc cagctctggt ctcgggagat gcaaccccca
      181 cttgcctcgc tccgtcgccg gcagcttttt cattatttat ttaatgtctt gtaccgtaaa
      241 taatggtgac tttatggtta ttaggaacgg gttaaggtac atgcgggcag caccaggctg
      301 ccttcaaaag gaacaggccc ggcataaaat gttgcgataa ttgctttact gctgagtgct
      361 tggtctttat tttgtgtccg atttgtctct taagccagcg taacattctc cccgctgcag
      421 gagaatgcag agagcaaatt gaaggtctga gcgtgaacaa tgcaacatgg tgcactgctg
      481 ggtttttctt ttctttcctc tttcttcgtt cctctctcga cctccctcca gtcatctctg
      541 ctccccctcc ccctccagcc tcgtctccct ctctgccgct ctgactcttc cacc
//
LOCUS       KCLJ01003546             492 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 395288cal ultra-conserved element locus
            uce-3950, sequence.
ACCESSION   KCLJ01003546
VERSION     KCLJ01003546.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 492)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 492)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..492
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="395288cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>492
                     /note="ultra-conserved element locus uce-3950"
BASE COUNT          151 a           91 c           81 g          169 t
ORIGIN      
        1 cttgagcccc tacacaacag ttccatagat ctgtactaca ctaagctata ccttctttgc
       61 ttctctttcc tttccacctt aagagttcat tatctcagct attttcagat ggaataatcc
      121 aacacacttc tcatttgcat gtaaagtgca gtcaatgtga attgatcaaa accaaattaa
      181 cagcaattgg ttccaatatt ttccctgttt acacattagc ttgctacctt taacatatag
      241 atgtattgaa ttcagcttag caacctgagc atgaatgctg tggcctttaa agagaaactt
      301 atctgtaatt aaaatcatgc acaagtttta gtgggaatct gtttactagc tagaaagaaa
      361 gctgattcta aaatggaata gaatttagct tagtagttca tgcgtttgat tctgaattaa
      421 atcccctaaa attatgggga agttttatta agcttcagat tatatgaagg ctatgtctag
      481 ttctggatgg gt
//
LOCUS       KCLJ01003547             710 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 395390cal ultra-conserved element locus
            uce-3050, sequence.
ACCESSION   KCLJ01003547
VERSION     KCLJ01003547.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 710)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 710)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..710
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="395390cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>710
                     /note="ultra-conserved element locus uce-3050"
BASE COUNT          128 a          229 c          187 g          166 t
ORIGIN      
        1 cgctggtgcc cagctcatgt gagagccctg ccttaagcac ttacttggtt gttgtcttgt
       61 tcctcccact ccatggggca ctgaattggg gtttgatggg gtttcagctc tccgtttagg
      121 aggctgctat gtcctatttc caaaccaaaa tgcccataag cccagccctt cttcccacat
      181 cacgctgggg acgcgtttca ctggggcagg gaggtcactt gctcggggcg ccagaggaaa
      241 gagaaaatct ctccctctgc acctctcctg ctgaccctcc ctctcttctt tctctcccag
      301 ttgctcccca gcggatctgg gctgggccag actctccatg ctccgatccg ggtgagtccc
      361 ggcaaatact ggggatggaa tgggccctcc ctagaggttg tttggatgag agtttcttac
      421 aactttcctt gcaggtgagc ccatccggcc catcgacccg gcagcctggg tgtctcacac
      481 ggcagcgatg actggcacct acccagcgta cggtatgagt ccatccatga gcacaatcac
      541 ttccaccagc tcctccatca ccagctccat cccagagacc gaacgtaagt ccttgtgcct
      601 ccgtgctgca cccgctgcac ggccccctca ctctgctgtg aaaggagcaa tacatctgcc
      661 tggggacagc tggggtgggc ctgatctgcc ctgccaaggg actgggaggg
//
LOCUS       KCLJ01003548             754 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 395502cal ultra-conserved element locus
            uce-1470, sequence.
ACCESSION   KCLJ01003548
VERSION     KCLJ01003548.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 754)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 754)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..754
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="395502cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>754
                     /note="ultra-conserved element locus uce-1470"
BASE COUNT          179 a          208 c          140 g          227 t
ORIGIN      
        1 tgcggccggc gggcacacca ctgcacacat cgcgcacggc tgcggctacc ccgccgctcg
       61 cctggcggtg gtcagtcctc ccagctgccc tatccgttac tgtctgatta gctgtgcgaa
      121 ggagcccctc cccggccagc tttccccgcc atctgttcca cacgcgatgg ctgccgccca
      181 gcagcctcgc gctgccctcc tacctggcac ccggctcccg gccttacccc aaagtgctaa
      241 cacaggttct cgctgctggc agagtcagga tttcattact actactttga caagtgcagg
      301 gttgtttgta atttctcttt tatcctgatt ttgattgtac aaccacctcc cactgattca
      361 gtttgcttca gttttgttgc tcacagattt tactctccac attaatctcc ctctggcatg
      421 ttactgcatc tgttcccttt tttattatta attttcaaat tcccaccatt tttgacaaaa
      481 aggaggtaat ctacactctg cttctgccca tttcattttc tttaatttgg aagataagta
      541 tgaaagcgtg ccaaagaagt taattctccg ttaacagttt attttctggc atcctgatgc
      601 ctttgtatat gaaaaccaga tagaaataaa tgttgactga atcacaacaa catagtcgca
      661 accgtcccta catttaatga aaagtaaaca tacgaagcag aatctaaaaa gtttattagt
      721 tagagttgtt tcatgttatc actcaaaata atgc
//
LOCUS       KCLJ01003549             716 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 395615cal ultra-conserved element locus
            uce-4220, sequence.
ACCESSION   KCLJ01003549
VERSION     KCLJ01003549.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 716)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 716)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..716
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="395615cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>716
                     /note="ultra-conserved element locus uce-4220"
BASE COUNT          160 a          170 c          189 g          197 t
ORIGIN      
        1 gtcttttttg atcagcagca aaaagacaaa gaccagccct ttaagtcaga tgcagtaaac
       61 tgacctttgg agaaaaagga gaggtttgag cggttttcca caaatgctaa tggcctagaa
      121 aacatgttta cccagggctg ggggaaggct gctgtgctgc taccagctca aaatgtccgg
      181 aatgacactt tcattcacag atgtctttcg tctgtgcctc agagggccgg ggtcagagca
      241 gcaccggcag gcaggtaggc aggggcgaaa ggtttgatca gtgtgcgatg gctgcgctcg
      301 ctctgcattt gtctctgagg tattgccgcc tgggggggac agtcgggctc tggtcctact
      361 cacttcctat tatccatgtg acttgtctcc gccacgctgg agtcactttg atttgcctga
      421 tgtactgctt gacaaagctg ggtgatggct gagaagtgga tccagctgct ctgaaaagcg
      481 cacacctgac atgccagtcc tggtgcgggc acatcatggg gagcattttt taattcaatg
      541 taatttatgc attcttgcag tcctgtgtgt gcctggcctg tcagccagtg cctagatgaa
      601 ggctgacagt tgtcatccag ggcctgaagg tagcctcaca taatgacaca ttagacatac
      661 taatgatgtt ttcttctggc ataatgtttt cttctcaact ttcctctctc ctctcc
//
LOCUS       KCLJ01003550             381 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 395724cal ultra-conserved element locus
            uce-2052, sequence.
ACCESSION   KCLJ01003550
VERSION     KCLJ01003550.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 381)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 381)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..381
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="395724cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>381
                     /note="ultra-conserved element locus uce-2052"
BASE COUNT          116 a           80 c           66 g          119 t
ORIGIN      
        1 ttttcttccc tgtaccctga ctcaggcctg gctttgaaat gcatttcaat ctctcaacac
       61 agactgcttt cactgcattt agagtcccac caaggcccag ctttaaaagc tactgattct
      121 ttttttcttt agccttcctc acaaaggaag ggtattttgt aaattaccag ctcgttcaga
      181 tcaacaaaag gtactttcat agaaagcccc atttgatttt gctcaaattt gattacaagg
      241 atggagaaaa ggaaaggaag tcaaaaagaa aaaccccaga tggctttttc attcatctca
      301 gtgaatgagc tttatctgtg ccttttgaaa ctgtagcagt ggaaaagcat ttctgttggc
      361 ttaaaaaact tgacaaaaat t
//
LOCUS       KCLJ01003551             574 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 395826cal ultra-conserved element locus
            uce-1880, sequence.
ACCESSION   KCLJ01003551
VERSION     KCLJ01003551.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 574)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 574)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..574
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="395826cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>574
                     /note="ultra-conserved element locus uce-1880"
BASE COUNT          202 a          102 c          104 g          166 t
ORIGIN      
        1 taacagcata gcaactgcaa cttagaacaa gtcagttagt ggactgttag gacacttttg
       61 ctgtgtaaca catttagacg catgcattta aaaaacaggt ggataatcca aatgctcagt
      121 tactaggaca ctaacagtta tgtccatggc aattttgttt ctgttcttta aacaaatcat
      181 cacttgcaag cactaatgtt aaaaccagaa agccactcta gtacacagtg gctataaatg
      241 ccaaatcaat tttcagcaga taataaagtc catgttttac aatcagcaat acactgtttt
      301 actacccaaa atgtaagcta ataatatata gctctgctaa atggaaaatg cagatatgct
      361 gttaagaaat gggctggctg tgagatgatg gatcatttct gccgggacct tcttaaagct
      421 atgtgcaaat gttttgaaaa tatcacatga tgtggccatg tgttaaaaat tacagccagt
      481 taagttctct gctaagaaaa atatgtgggc aatttatgaa atgcactcca ggatggagat
      541 atcttaagta aaaccagatt ttgaaaacaa accc
//
LOCUS       KCLJ01003552             546 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 395932cal ultra-conserved element locus
            uce-2657, sequence.
ACCESSION   KCLJ01003552
VERSION     KCLJ01003552.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 546)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 546)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..546
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="395932cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>546
                     /note="ultra-conserved element locus uce-2657"
BASE COUNT          125 a          131 c          114 g          176 t
ORIGIN      
        1 tttttggaat gaggagtcct cttctttcag tcatgaaatg cacatgaact gcacaaaatg
       61 cacataactt ttttcattcc acacagcctt ctttctgctg atttttatta actgcacaga
      121 aacagagctc cattttcttc tcgtctcctg cttccaacaa ggttttatgt ctgccctgct
      181 atgaagatga aaaaccacca atatttgctt ttaaggttct cagatacagc acctcactca
      241 ggtgggaatt gctagcagga tcggaggtca accagtggag ctcccctcag gcagagcagg
      301 gcatggccag ccgggggggc cagggtggcc ccagtatcgt ggagaggatg aatgtgctag
      361 gcgagatgca gtgagtactc ttacacattt gcatagtttc caaagtagat ttgtttgggt
      421 aattactgtt tggaacatac ttttagttgc ttctctgaca tcctttgctt tgctcttcaa
      481 acccttgtta gctcttctga cttctgcttg ctgctctttc acctttgctc tctcatttta
      541 ccctaa
//
LOCUS       KCLJ01003553             262 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 396040cal ultra-conserved element locus
            uce-7050, sequence.
ACCESSION   KCLJ01003553
VERSION     KCLJ01003553.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 262)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 262)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..262
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="396040cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>262
                     /note="ultra-conserved element locus uce-7050"
BASE COUNT           76 a           61 c           86 g           39 t
ORIGIN      
        1 aaagggcatc aggcagcccc ggcccggctg acaggtgtgg ggctcggcag cgcccgccgc
       61 cgcggcggga acggagccgt aattagagca aggaacagaa tgaacgtcag atgaattacc
      121 aggcagcaga tcatatttgt cagggaggat tgcatacata aaaattaagt gacagtacat
      181 gccgaggtaa tgaaagaaaa atgaaagatt tgcctgtaca cagctcgtga gatgccggcg
      241 agcgccgagc gccggcggga gc
//
LOCUS       KCLJ01003554             572 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 396141cal ultra-conserved element locus
            uce-5064, sequence.
ACCESSION   KCLJ01003554
VERSION     KCLJ01003554.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 572)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 572)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..572
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="396141cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>572
                     /note="ultra-conserved element locus uce-5064"
BASE COUNT          161 a          113 c           82 g          216 t
ORIGIN      
        1 cctccaataa ataactgctg catttccagt cactcaaatt tggacagaat tttacttcct
       61 gtttcaaagg tcaaggaaag ctgacctcaa cagcagtgtt gaggctgctg aattattcat
      121 atcattgact ttgtgtcagc ttccacattt gtgcagaggg atgttttatt catttatctc
      181 atttagggac ctgctctgca cctgtttcta ccattaagta ccctgtaatt tgcatttgat
      241 gctaatttag tttcatatca gcctggtccc ctcttgttaa tttaattttc taagaccctt
      301 ttcattacag tagaaatgtt tccctcttta aagcaaacat ctatacaagt aattgtataa
      361 actgcctttt aaataatatc ttttagaaga ttccatcgtt taattcctta attcctataa
      421 ttagccatgg tttgattaat gtttcaaagg gttaaattaa aatgcagaat tactcaaatg
      481 catacttgaa taattttccc tctgctgata acagtttctg cattgctgct tttattctcc
      541 tcgtgattct gaatattaca tgtactaaca ag
//
LOCUS       KCLJ01003555             740 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 396250cal ultra-conserved element locus
            uce-195, sequence.
ACCESSION   KCLJ01003555
VERSION     KCLJ01003555.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 740)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 740)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..740
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="396250cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>740
                     /note="ultra-conserved element locus uce-195"
BASE COUNT          208 a          169 c          163 g          200 t
ORIGIN      
        1 aagcagttgg tgacagaaaa ggaactccac acatattgca caaatggagg ctgtggacaa
       61 caatctctgc ctttgtgcca gctgtcaaat aggggtgcat gcttgtacac agaaaagcag
      121 gaatatctct gaaatcaaaa ctgcaatgca attcagctcc cccattactt taaagatagg
      181 attctgcttg aataagaaac ccccagttag cattatgaag tactgaatag cttttaaaag
      241 aatttagaaa atacgtacaa ggatgaaaag gtcacttgca taaaagaggg tatgcacaag
      301 gtgaaagcct aatgaaacat tatgcggtat cttttttggt actcagaata gctccaaggt
      361 taagagagtc cgagtcagtc ttctgcagat ccatttcctc tctccaggct tctcatgtta
      421 acccagtgat ttagtactct gcattaagag caattcacct gcctctggtg tccctgtggc
      481 ccatccctct ggggagcgag gtggagaata aaaagttcca catatggtaa agtcaagctg
      541 cttggagcct gctgagtgtc tgctgtgggg atagcggctc ctgaaagccc cagctggtac
      601 ttggaagaga ttctgcatta ctacacctca gtgcctgctt ggttcccttc ggaaactgtt
      661 ggctccacat acgacagcca ttttagatct cttcaaccct tttctcccgg ttctgtatcc
      721 aactgaacag ttggtcctct
//
LOCUS       KCLJ01003556             570 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 396360cal ultra-conserved element locus
            uce-4377, sequence.
ACCESSION   KCLJ01003556
VERSION     KCLJ01003556.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 570)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 570)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..570
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="396360cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>570
                     /note="ultra-conserved element locus uce-4377"
BASE COUNT          165 a          106 c          115 g          184 t
ORIGIN      
        1 ttttactgtc aaataaatac cttttaagta taaggatttc cttctctcca ccatcaccac
       61 ttcatttatc ttttgcttaa atccttcctc tccagaaata atacaaatca agcctctggg
      121 gcctgtttat ataatgggga tttatgtcat ttcaagacaa atggcatttg ctaagtttca
      181 gggaagcacc tgtattaatt gtatttcctg ctcatgcgtt gcttttgttt gcaataaaag
      241 aattcatctc aggtgagtta accttgcttt tagagagggc acctgcagtt atcttagtgc
      301 ttattgtaaa tgaaaacatg ttgagccttt aaagcagtga aataaagagg tgctgacaag
      361 agggtatgcc aataggatta gaagcttttc tcaccacttg tattatcagg atggagaatt
      421 gagtcacgtt aaattacagg gagaagagat attcccagaa gttccacaga ccagagattg
      481 acttgctcct ttagtaaacc ggtggatagg aggggcatcc tgtgcttggt gagattagaa
      541 aaagaccttt cccttttagc cttaggcatc
//
LOCUS       KCLJ01003557             698 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 396472cal ultra-conserved element locus
            uce-3586, sequence.
ACCESSION   KCLJ01003557
VERSION     KCLJ01003557.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 698)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 698)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..698
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="396472cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>698
                     /note="ultra-conserved element locus uce-3586"
BASE COUNT          186 a          170 c          143 g          199 t
ORIGIN      
        1 aaggagttat taaatgccaa gcggatatgc aataaatccc attgatttta caaactccag
       61 cttgtcttca atctctttcc attctttatc ctgggggcat tgcaacaaaa ccctatttta
      121 aatacctttt ctttcccttc ccccccccct cctctcactc ccaaaaaagt gtcaatattt
      181 tatttggatt tttaacttcg ctccataaca gttgtttgac ctcctgactc atgtgagtca
      241 cataaattct gggactttat tcaggagcca tgttccttct attgaataag caatttggga
      301 gggtgaatta atgacttgtg ctgttgctgg aaagtccctg aagaaatatt aaaattgctt
      361 gcagaccgaa tcaatactca ctgaacaccc agcatgagga cctgggcttt ttaatggcta
      421 caagcagcag cactgggtag aggaagggga attcctgtac acacaacaca cgcaggcaca
      481 cacaaccaac agtagccagc cttgctggct gtttcaacag cacattcttg tgcacacaac
      541 ctgctacgag ctgctgcctg ctgtgccagg gaaaggactt ccccatctcc ctcccaagaa
      601 gatcatgcag gatttgctgg tggtttgggc ttgttaagcg cttgggttag catggtctgg
      661 cacaatctgc aaggcacaag gaaggatgat tatttgtg
//
LOCUS       KCLJ01003558             626 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 396582cal ultra-conserved element locus
            uce-4042, sequence.
ACCESSION   KCLJ01003558
VERSION     KCLJ01003558.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 626)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 626)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..626
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="396582cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>626
                     /note="ultra-conserved element locus uce-4042"
BASE COUNT          198 a          105 c          118 g          205 t
ORIGIN      
        1 ttgttatgtt aatttaaaaa tttaacaggt ttattaatcc tgcagaattt attatagtca
       61 aacatgagat attattaagt tgctattgta caaagcattt acctttgctg ttggaatgac
      121 ttgtcctctg cattggcaga cacagaaaca ttcattttgt ttcctaatta ggagagctgc
      181 aatcaggaac catgacaggg ttcagctcct cggtgtacag catgccaggt tccatagtgc
      241 aggctttata aaattctctt taattcaaga acagaatatc attaactttg taagtggatg
      301 aatacaatgg acaagcaatt taattaactt ctaacattgg atgttggaca ggagacaaaa
      361 tgaaattatg cacatatttc ttatgcaggc agtcaacctt gaaaggggct tgattgtgat
      421 gggtcagaca aggggacagc tttgtccaat tatttgatgt ttagtcctag aatatgaaat
      481 ttgaaatttg gtactttgta aatcaatcat ctcttatttt gaagcagcta cagaggttct
      541 ctgagataca aaacaaccac cagtgactgt gacacgctaa atacaacctt ttaccacatg
      601 gtactttcct atttgtagat gacctg
//
LOCUS       KCLJ01003559             366 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 396691cal ultra-conserved element locus
            uce-1134, sequence.
ACCESSION   KCLJ01003559
VERSION     KCLJ01003559.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 366)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 366)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..366
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="396691cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>366
                     /note="ultra-conserved element locus uce-1134"
BASE COUNT          115 a           54 c           55 g          142 t
ORIGIN      
        1 tttgtgacaa tgtgaagagc aggtcgaaag ttttgagggg ttttttttct ctcattatac
       61 tctgtaaatg gtatgtcagt taaagcaaat agaaaaaaaa aattaccttg catacgcctt
      121 ttctatcaag tgctttaaaa tatagaataa atacacacat cctgccagtt ttttcttaca
      181 gtgagagtat ccttacctgc catttaatat tagcctcgta tttttctcac gtatatttac
      241 ctgtgacttg tatttgttat ttaaaacagg taaaaaaaga aaattaactg tagcgcttca
      301 ttatactata ttattattat tattattgtg acattttgga atactgtgaa gttttatctc
      361 ttgcat
//
LOCUS       KCLJ01003560             610 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 396796cal ultra-conserved element locus
            uce-4925, sequence.
ACCESSION   KCLJ01003560
VERSION     KCLJ01003560.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 610)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 610)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..610
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="396796cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>610
                     /note="ultra-conserved element locus uce-4925"
BASE COUNT          191 a          118 c          118 g          183 t
ORIGIN      
        1 aatcacaatc agccagggag aagaattatc tgctgaacag ctttgaagca aagttttccc
       61 agcaggcttt ttctgtattg aagtttcaat gtaaacgcat caccatagct gaaatactta
      121 aagatgattt acttaaaaag agagagagga gctgataaga aaatatatcc ccaattacca
      181 cccctcctct tcccgatttg taactgctcc taataaactt tcatggtctg tgtaaaatgc
      241 tttagtgcag tgacaaattt ctgctggaat ttgagatgtc ttgttcagag taatagctat
      301 ctcacacagg tgcccagctg ctattgtaaa atcagtaagc atttaattga aacaaatgac
      361 tataataata gtacattatc cctgcaggct catagccata acagttttaa ttattgagtt
      421 aagagtcaaa ctaatttatc ctttaaagta acagccacat ctttggttcc accgatcatc
      481 ctattatgaa cacgagggga gcagttggaa gggatttaaa aagggagtaa tttattttgg
      541 aggaggtgca tttatcacac ggcagaggat ttccctgtgc tctggcattc ccagctgtgg
      601 ctgtcacttc
//
LOCUS       KCLJ01003561             386 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 396907cal ultra-conserved element locus
            uce-1744, sequence.
ACCESSION   KCLJ01003561
VERSION     KCLJ01003561.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 386)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 386)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..386
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="396907cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>386
                     /note="ultra-conserved element locus uce-1744"
BASE COUNT          125 a           83 c           56 g          122 t
ORIGIN      
        1 atttaatttt ctgcacttcc tcttaatcct gtagcaatcc cttcctggaa ctaccatact
       61 actgacgcac actagttgaa aacagaggta aagaagtttt ctttgtcaac agcctgacaa
      121 aattgaacct gttcttttat ctgcctatgt tcatttagcc caccaagcag tctttattaa
      181 agctgaggca tcaggcagtc aaagttcatt aataccattt atataatctc tgcagtttca
      241 attaactcag caagacattc tactacatga taacagtctc attaattcaa taaaatccca
      301 taactattaa caatatggtc tatgttaaac ggggtgtcac ctagtagaaa ataatagctt
      361 taacagcttg tgatgaaacg cagtgc
//
LOCUS       KCLJ01003562             313 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 397011cal ultra-conserved element locus
            uce-5032, sequence.
ACCESSION   KCLJ01003562
VERSION     KCLJ01003562.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 313)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 313)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..313
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="397011cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>313
                     /note="ultra-conserved element locus uce-5032"
BASE COUNT           95 a           53 c           55 g          110 t
ORIGIN      
        1 tatgatttat gaagttgcaa ggggaaaatc tgtttccagc tttttctagt tatgttcaat
       61 cctttcagtc tctatctgaa atgaaaaaaa tcaatagcac acgaattgtg ttttgataac
      121 ctctctacaa atactgttct agacatcctt caccacttgt ctggctgcat tatctgcaat
      181 tgtcttttaa tagactgaga ctaaattatt agaaaagaat tgcatcacta gggagtaaag
      241 gttgtcaggt atcaatgaga tgtaatacat caaatgctgt tgtgtacagc cttatctcat
      301 atactggttg ttg
//
LOCUS       KCLJ01003563             617 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 397117cal ultra-conserved element locus
            uce-3924, sequence.
ACCESSION   KCLJ01003563
VERSION     KCLJ01003563.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 617)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 617)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..617
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="397117cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>617
                     /note="ultra-conserved element locus uce-3924"
BASE COUNT          189 a          130 c          115 g          183 t
ORIGIN      
        1 agtatttaat cctgactgat gactgaaagc tttggaacat gtatttagat caaaaagtgc
       61 tatataaata tagacattac aatgtcacat atgtacagcc atcttccctt agtatcacat
      121 aaaaattgac ctgtgttggt ttccaagagc tttgcacaag gtggctgatg tcaaaaatgc
      181 agcaaagact caggttgttc agttttaatt tctggagcaa aacttcagca aacagtaaaa
      241 cacttttgtg gagttgtgaa agttcagcct agctgtttga taaatgagca gacaggcaag
      301 cagcccttct ttcttttttt gtatggattc aatgaagcct gcctaaagaa caccacatgc
      361 tgttccagct actgatctaa cattccgcaa catctcagcc ttccaaattc cctttaatta
      421 cacattaatc ccacccctct ctctttcatt ttctgcagac agggttgggg gctccacaag
      481 gctgtgggaa aaaaggcagt gttgaagaac tactttctga ggatggttgt cattcagaaa
      541 ataccatagc agctcttaca gccgctgatt aatattagaa ggaacagcat caaaccgtat
      601 tactttcatt ctagcag
//
LOCUS       KCLJ01003564             491 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 397228cal ultra-conserved element locus
            uce-1025, sequence.
ACCESSION   KCLJ01003564
VERSION     KCLJ01003564.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 491)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 491)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..491
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="397228cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>491
                     /note="ultra-conserved element locus uce-1025"
BASE COUNT          157 a           88 c           85 g          161 t
ORIGIN      
        1 ggttacagta attgctgtct gagcctcaaa ggctaaaaat cgtttttcat ctcatgcatg
       61 aagaatttta gtctgattga tgacagctat ggaacctttc cttagtcact aagctgcact
      121 aatttgcaag ctaaaacaat attagcaaat tgttaatgat ccatgaaact gcagcagcag
      181 ccttaaatgt tatgctcaga actttcttac aactaaagca gcttacctaa attcccacaa
      241 tggacacaaa atgagatgac atttacaaaa taattgtgaa agtgacaggc ttggttaatt
      301 acattagtgt gaataatttg tattgagggc atgtgaacaa ttagcattaa aacccaaacc
      361 tagtttgtag cagtttggat ttaattttca cattgagcta aagcacacat ttcctgtctg
      421 catttaatgg ctgcaatttt cctctatttc tatcactgtg ttgctggctt ttaagatgaa
      481 ctggaaatct t
//
LOCUS       KCLJ01003565             428 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 397329cal ultra-conserved element locus
            uce-1100, sequence.
ACCESSION   KCLJ01003565
VERSION     KCLJ01003565.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 428)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 428)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..428
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="397329cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>428
                     /note="ultra-conserved element locus uce-1100"
BASE COUNT          135 a           77 c           93 g          123 t
ORIGIN      
        1 gtgtgtgtgt ctgaacagga ccccaatgaa aggaaggaat gagagatgct aaacaatgct
       61 gtgcaaagtt gcagactgtt cggctacagg ccagaaaatg aatccaattt ttcattctgt
      121 cattataaat atttcagtgc aaatggtact gattttctgc aactgtggtt aagcaaaggg
      181 cctccgagtg aatatttaag ggggtaaaag agagaaatta aggttagcga ccaattaatt
      241 tcaaactttc attgtgaaaa ttctacagtg atgcagcatg tgactcgaag gagaaaaaaa
      301 catttactct gctcttcttc tgacagtttc tcataaaata tctgcagtcc atctatcttt
      361 tagtactcca ggctcctctg gagagcagaa aatagtagtt taaagctcac ttcagtgcca
      421 gtctgcgg
//
LOCUS       KCLJ01003566             757 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 397436cal ultra-conserved element locus
            uce-2131, sequence.
ACCESSION   KCLJ01003566
VERSION     KCLJ01003566.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 757)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 757)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..757
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="397436cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>757
                     /note="ultra-conserved element locus uce-2131"
BASE COUNT          273 a          116 c          132 g          236 t
ORIGIN      
        1 tgattgagaa aactcataac aagtgaaata ggtgaaccaa catttcccaa gtgttccaga
       61 actagtgttc tgtgtatata aaaaaatctt gcaaaaacat atccaaataa tcatgtcaaa
      121 tataatttct cattagcctt atataggtaa aaatgtttag caacactaaa caataaggta
      181 ttcaaaatat agaacatcta gtttaatgca gattaatttt taacaagaat tcctatgcag
      241 taggcagata gttcccacat tccattgtga ttgacaagcc tgacatatgg aatagttcac
      301 aaattcccag gtgactgaca gatggagaat agaaaggcgg ataaagttgc ctagagagct
      361 gaggacgatt tcatattcag cggttttgat caaaaggatt ccagatctca cactaaattt
      421 agcaccgctg gcaattagtg catgatttat tcagtccttt catttgctgg ttgacaaatg
      481 gaaaacaagc acaaaattaa aaataagttt atttccagca tttcggatat ttaaaatgtg
      541 tgtgtctttg tttgcacata aattaacatg agatgaattt atagtgagat taaatctgaa
      601 atggagatgc aagcaataaa taagagcttt tttatgtatc tttcaggcag aacaggtgtt
      661 tgaattaaga aatactaata tgtttagcag catgactcca cctttagcat tagggagttg
      721 atgtttccct aaatttagaa taatctttcc acaattt
//
LOCUS       KCLJ01003567             426 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 397651cal ultra-conserved element locus
            uce-7843, sequence.
ACCESSION   KCLJ01003567
VERSION     KCLJ01003567.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 426)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 426)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..426
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="397651cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>426
                     /note="ultra-conserved element locus uce-7843"
BASE COUNT          127 a           79 c           88 g          132 t
ORIGIN      
        1 tgaaattcaa gtatgctgtt tgctttgtgt ttttcttttt agcatttatt tattttattt
       61 ccagagctgg aaaatactac tttgatgaat ctgttcctca ccctaaagct gtctgtctgt
      121 tattcatcag aaagcaggtc gcagttcagt gagcagaaga aaagatttta atagaagctg
      181 tgccaagggc tgtaatgcat cattttaggg ccctaattac attacaatga caaatatcaa
      241 tggtgacaac agcaataacc tacatccttt aatggctatg ctggaaaagg agtttgggca
      301 ctgcgccatc agattagact tggtttcaaa acataggcca ttagaagtgt gcacagcatt
      361 gctggctgat aactgaagcc ctgtggaaag gcctgtaaat aaatgaagcc tctctaaagc
      421 ctgatc
//
LOCUS       KCLJ01003568             564 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 397755cal ultra-conserved element locus
            uce-7632, sequence.
ACCESSION   KCLJ01003568
VERSION     KCLJ01003568.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 564)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 564)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..564
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="397755cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>564
                     /note="ultra-conserved element locus uce-7632"
BASE COUNT          157 a          116 c          119 g          172 t
ORIGIN      
        1 acgaggctta ttaatatcca ggcctgcaga agacaactgt cagacaattg gtcaacaagg
       61 tacatggtat ctgttagata ctgactaacc cattatgatc tttatgaagt gtccttttgg
      121 gggtctagat cttcaaatat gagttggaag acccttttct tttattagtt gctaagctct
      181 ttatactttt accatattgc ggcaggttag gagtctgagc tttattgtct tatgttattg
      241 aaaatccaga ttcccgcagc cttctccctc aggtcaagat ttgtctgaga atacattctc
      301 atttctccat gtacaaaggc tgtctggaga gaggcagaaa aagattatga ctgtaatata
      361 cttaaatcca atttatttgc ctgactagaa acttccacac ttcacaattg cttcctacag
      421 aagattttgt atttaattcc ttcatcgcgg cgaggagcag gagagagctg agtcctccaa
      481 caggtctcac gcacacctga gccagagcag ggagggaggc agcaaatact ttgcagggct
      541 gcagttattt ctgctgcaga aata
//
LOCUS       KCLJ01003569             339 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 397866cal ultra-conserved element locus
            uce-5751, sequence.
ACCESSION   KCLJ01003569
VERSION     KCLJ01003569.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 339)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 339)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..339
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="397866cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>339
                     /note="ultra-conserved element locus uce-5751"
BASE COUNT          128 a           70 c           43 g           98 t
ORIGIN      
        1 ccaaataatt acaatttcca tttctaatac aaaaaaccaa agcttctatt tactaaccat
       61 ttctcctcta cctcttgaaa tccaaggaac aattaacatt gcagcagtta aaaattatcc
      121 attaattaga gctggaagca agcacccatg aaatacaggt gataaccata aatcagaaca
      181 attagtctgt ctaaaaaagc aacatgatca aatcagaaag tctctaccac ctgctcattt
      241 aatcttaggt tgcagactgt tctgaggaga caaatctata cgagatgacg tgaaatttta
      301 catctatgca tccctcaagg ttattctttg aaataaatt
//
LOCUS       KCLJ01003570             560 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 397972cal ultra-conserved element locus
            uce-6602, sequence.
ACCESSION   KCLJ01003570
VERSION     KCLJ01003570.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 560)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 560)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..560
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="397972cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>560
                     /note="ultra-conserved element locus uce-6602"
BASE COUNT          166 a          102 c          115 g          177 t
ORIGIN      
        1 ggtggatgct gaccaaggac aggctcattt ctaagtggaa ggaaggcacc cggaattaat
       61 tgttgcattt ttgtcacatg tttatagtaa atataataac tgggtacctc cccttcagca
      121 gaatgtttgc gagactaaac tgcaaatgtg tttattgctg agatgaggct tacatttgaa
      181 accagttcct gaatttgcag cttcttttat gcagccagta tcagtccaag tgtggtggag
      241 ttgagtctag tgaaggcccc ttcctgtcat aaataagatt actttcattt cacttgtgga
      301 gtgtgttatt cctcagagta atgaatttcc tctgtgcctt tgagcacata aacatggttt
      361 tcattaggtt tctattgact attaactcca taaatgcaga tgcattttcc catgttggaa
      421 gtaaacagct tcttcgctga aggctccaaa ttgcagaaaa tgctgcaaac ctgaattcta
      481 ctatcagaga acaaagatac tggaaaaact agtttattga aaatagacta aatgtagaca
      541 gacaaatagc ttcaggcttt
//
LOCUS       KCLJ01003571             620 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 398076cal ultra-conserved element locus
            uce-6584, sequence.
ACCESSION   KCLJ01003571
VERSION     KCLJ01003571.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 620)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 620)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..620
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="398076cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>620
                     /note="ultra-conserved element locus uce-6584"
BASE COUNT          184 a          109 c          115 g          212 t
ORIGIN      
        1 aaaatctgtc aatagatctt ttagatgctt ttggggaagc taagctcaat ttgtcaataa
       61 aaaccagaaa tgaactagct ttgctgctaa tttattgaaa gagagagatc tattcttcct
      121 ttttaacaaa ctttgaccac actcggtctg gggagctcca tacaaaagat atacaggact
      181 ggaaaaaaat aactgattaa attttaacca gctgctgggc agatagtttg cctgaggcac
      241 ttttgtcagt ttcaaagggt ccttttatta attttgcatt ttgtattttg ttagtggaaa
      301 gagctggctc tgttgggact gccaaaagct ataggcagcg aatcttacag cagcaaagag
      361 gaagctgtag agcatgccaa gtagatttag cacactgagc actctaaatt acatttgttt
      421 tatctgttct aaaaatatat taacttcagg tgtaagttct ttgaataaag ccttaaagct
      481 agtacattca gttcctcttc tgtttatata aggctttcac tttgtctaga aaaacaaacc
      541 actgtagtct ttgcctcata actacccatg taatttaaat ctttccttcc tatggttgtt
      601 ggtgcttctt tgttgttctg
//
LOCUS       KCLJ01003572             651 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 398188cal ultra-conserved element locus
            uce-6127, sequence.
ACCESSION   KCLJ01003572
VERSION     KCLJ01003572.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 651)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 651)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..651
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="398188cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>651
                     /note="ultra-conserved element locus uce-6127"
BASE COUNT          192 a          145 c          127 g          187 t
ORIGIN      
        1 aggaggcttg tcaggatcaa ggcaggactt caaaaactat gctgctggat ttatgaagat
       61 gggtttattc taaaacaaag cccagtaaat ttcatttagg cccagcaagc ttgaggaaaa
      121 tgacacaggt ctctcggcta aagagagatt tccatttctt ggcgcggtaa caaatcctca
      181 ggcagagcag gggtgagatt ttcctctgta agtaacttaa tgaatgaagt actaattaac
      241 attatggcat tgataaatgg agagagagat tagggatgta ctcgatattc aggccttccc
      301 agatggaccg tcaaagccac attaattcct atctcattgg agcatctgct tctcccataa
      361 tccattgccc cttggtacaa acaacacaaa ctgttgtgac tcaattcgat ttatatcaat
      421 ctaatttctt ttaatccaat ttgtattcca atctactacc ttctaatcac ttaaatcttc
      481 agcctccatc tggtaaattt tctctcaaaa ttaaccgagc agatgcctct gcaattgtct
      541 tccacagtca ggctaatcat gccctggcag tggcctacag agctcgctga ataggtacgt
      601 gacttacagc attgcccttc ttattacaag catggcgatg caggaaggcc a
//
LOCUS       KCLJ01003573             659 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 398300cal ultra-conserved element locus
            uce-5135, sequence.
ACCESSION   KCLJ01003573
VERSION     KCLJ01003573.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 659)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 659)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..659
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="398300cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>659
                     /note="ultra-conserved element locus uce-5135"
BASE COUNT          216 a          111 c          130 g          202 t
ORIGIN      
        1 aatagcaatt agagttcaac agatttcatc cataggtgcc acatttgcat agtgcgtggt
       61 gagtgccttt agtacagtca ctcctcagtg aaaacagcag tggtggtggc agtattaaag
      121 tggttagtaa ggatgcctca gcccgggcca ccacatagca accactaggt ttctaaggac
      181 aaatagcttt tgcctgccct aagcaactca gtgagaacat caaaacatgc cttgtcccat
      241 tagtggtagc aactgttacc tcaatcatga atgacacagc cctaattatt aaggtaatta
      301 gaagttataa cactggcaat attaaaggga gaacttctaa aacccattaa caatgttact
      361 ttaagtgatc tggctgtgaa ctgttcaaat ctctaattac attatatgtc tgtcttaaag
      421 ggtgatgtaa ttaagtgatg ggagagggaa tgaatatata gagactacta tactatagtt
      481 tgtaagtact attttcacag aaaccagcct cagtaatgtc attatgtcat ttaggggtag
      541 gattttttgt tcaactgtat accacatgta gctaaaaaat acttaaaaat tatatatcat
      601 ggtttggtat agtgatatta tcaaaattaa tttggattgg atacattatt caggcatga
//
LOCUS       KCLJ01003574             460 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 398410cal ultra-conserved element locus
            uce-683, sequence.
ACCESSION   KCLJ01003574
VERSION     KCLJ01003574.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 460)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 460)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..460
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="398410cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>460
                     /note="ultra-conserved element locus uce-683"
BASE COUNT          128 a          124 c           67 g          141 t
ORIGIN      
        1 cccaaaagta tttgccattc tttccagctc agcctaacac caccaacatt ttgactttga
       61 ggctgtatat ttgtatatat tttcctttaa aactgatttt gctcatatta aaagcatccc
      121 caagccatcc acagctttca caaaaagctg cctttaaagc catctcgttc tcctccacct
      181 gatcctataa agagtgctgg caatttcccc catgcctgta ccatattttc acttagcagc
      241 agtttgatgt ataagatctg acaggcaggc acttacaggc cacctgcatc actgtcacca
      301 tgacaacagg gaaagacaat ccatgatccc atgccctggt cacacgtttc aatacagctt
      361 atctgtccag agccactgag tctaatggaa gagagtaatt acaatcttcc actcaaattc
      421 tcaccattaa tgctcttttt attttattca tggctgcttt
//
LOCUS       KCLJ01003575             482 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 398517cal ultra-conserved element locus
            uce-4293, sequence.
ACCESSION   KCLJ01003575
VERSION     KCLJ01003575.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 482)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 482)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..482
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="398517cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>482
                     /note="ultra-conserved element locus uce-4293"
BASE COUNT          153 a           97 c          113 g          119 t
ORIGIN      
        1 tttttgagtg gcaaagtagc cccacttgtc aatcagctac ctcgcagctc taatggattc
       61 tccccgaatt taatttaaca tcttacaata cgcccacatg gccagaaaat gtggccagct
      121 tgatagggtt cactgagcca aaggagtggg accaaaacag ggcattaatg tataggggaa
      181 gaatggctgc aatcagttcc cttgtgaatt ggacacagaa cttggagctg aggcaattat
      241 cagccatcgg ggattaatag ggaagtgtga atgccaagct gtatatgtta ggggcagaat
      301 atgttgccta tagaaaacaa caaagagcgt ttcttactat taagtgagat taaacgtaat
      361 ggcctgattt aatcacaaag gcagaattaa attcagatgg caacttcaaa gtggacacat
      421 gcacagagcc cactgcatac atttacatat agctggcata gcttggctcc cagcacaatg
      481 gg
//
LOCUS       KCLJ01003576             911 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 398626cal ultra-conserved element locus
            uce-191, sequence.
ACCESSION   KCLJ01003576
VERSION     KCLJ01003576.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 911)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 911)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..911
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="398626cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>911
                     /note="ultra-conserved element locus uce-191"
BASE COUNT          286 a          166 c          204 g          255 t
ORIGIN      
        1 aggctcaaag gcagcaatcc tgagagggca cacctgagat ttgctcagtg cagagctgct
       61 agatgttccc tcaactctct gctcttcagc ctggtccagg cccttcctgg ttgtgttgac
      121 aggctgtata aacaaccctt gaggcacaga gctgcagagg taatgaagtg ccttgaggtt
      181 aactatcaag ggatggatcc actccctgcc acaaaccagg ggtcacgtgg ctgggaatgt
      241 gtatccacag atagtgctac cttcagagaa ctctacttac aggtaagtaa ctcttcttta
      301 aaggaggtat ctttgtgtgg cagactgttt atgggagcaa tttgaattga actttaaatg
      361 aaaaaggcat atctctgtaa gtggtaataa ttttagtcat ctcgctgtgg ctaggggttg
      421 tggaattcat tagcacagat taacatataa agtgggtgag atatctaata gcaaacgtag
      481 aggtttaggg accttaattc atcactgaat gaacagcgtg tacagtatta gggactatga
      541 aatttttaat ttacacaaag tgtccaagaa tatagggaat aaatttaaac ccaaaacaga
      601 taatggagct gtgccctgcc tagctggcaa gttgaattgt ttttacactg agtgaagaaa
      661 gctaattatc ccaagcacaa ggagactgct aaaaataata agattataaa gaataatttg
      721 ctgatataat tacaacaaaa ttgggtacac acaatcgtca gatacatgta ttgcttgacc
      781 tgggcgagaa agtgaaataa atccttcctc tatagccttc gtaaatttgt ttttatcatc
      841 tccaagtggt gtttgcacag gcagcacaat ttgcatgtgt aatgtggctg tacaaattga
      901 caacaagtaa a
//
LOCUS       KCLJ01003577             623 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 398739cal ultra-conserved element locus
            uce-7849, sequence.
ACCESSION   KCLJ01003577
VERSION     KCLJ01003577.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 623)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 623)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..623
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="398739cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>623
                     /note="ultra-conserved element locus uce-7849"
BASE COUNT          210 a          126 c          117 g          170 t
ORIGIN      
        1 tgtcaataaa tatcaggaga cattttttaa atagttgaaa ggttaaggaa atttaaaaat
       61 atgaatggaa atgaggaatc cgtctacttt cctacaagaa agcatgcaac aaacttcagt
      121 aatttcactt aatcacaaaa tctagtcatg aataggctgc taccataagg taagacaggt
      181 tgcagacagt cctttatgta aaagcaaatg tcaaaagaaa agctctgata tttagttgtg
      241 ggctcccact tttcacatag gcatttccta aatccatgtt tgatgagctt ctccagctat
      301 aaattctgta aattccctct ggagcagtgc agagtgtgct tcatgaaaat gtcatctgcc
      361 agcactgcaa ttactcacac tccagcaatc atgtgcacaa tgcagaatgg gtcgaattca
      421 ggtgagaacg agaaccagca atcaagcctc tggaattgag aacaaagcca ttttctttca
      481 tttgccatca acacaaccat caaggcctta attacaaggc aagtgtcaag cctggctgct
      541 gaaaggctta ttattataca gctcagcttc aaatcagttt tgtattgatg aactgcagaa
      601 atgaggaagc cagcttagcc cca
//
LOCUS       KCLJ01003578             348 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 398848cal ultra-conserved element locus
            uce-4901, sequence.
ACCESSION   KCLJ01003578
VERSION     KCLJ01003578.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 348)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 348)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..348
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="398848cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>348
                     /note="ultra-conserved element locus uce-4901"
BASE COUNT          109 a           55 c           66 g          118 t
ORIGIN      
        1 ttttgttgca tagtttttga atgagtgtca ttgttttctt gtgtatttat actgtatgta
       61 tgatttgcat gtctcaaaga taaagggatt aaaaacagta tactgacaac tgtttacaag
      121 aaagtggaga aaaatgtaca tacatttttg tatgtttaga tataccataa atactcagga
      181 ttggagctgc ttgtaagtat aacaaaatac acataacttt attttatctt gccagagtcc
      241 atcagttacc caaaccaaga tggcactttg tcttgtttat ctttaaactg taggccttat
      301 cggaagccgc ttaaaaggga cacttcactg gaggaggcat ccaggacc
//
LOCUS       KCLJ01003579             549 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 398946cal ultra-conserved element locus
            uce-1765, sequence.
ACCESSION   KCLJ01003579
VERSION     KCLJ01003579.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 549)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 549)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..549
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="398946cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>549
                     /note="ultra-conserved element locus uce-1765"
BASE COUNT          207 a          102 c           79 g          161 t
ORIGIN      
        1 gctataaaaa tgaaaacatt taaatttctt taaaattaca tttcacttaa ttacagccaa
       61 tccctaatac cagcaaacaa cccattttgc ctacttttca gcataaatag ccaccagcct
      121 catcatttca taaagagttg ttttcctaca tgatgttctc tatgtgcaga atgttaatag
      181 ctactatagc tgaatatgaa taggctttgt agctccactt gaaatataga aaaatggccc
      241 agacattaaa aaagataaaa gggaaaaggg cagtaatgaa tttagaggaa aatgaacatt
      301 aatggtacta gcattacctc atgttccaca taacaaatta ttggaaatct gtcaagcaca
      361 ccaaattatc tactcatctg ctgttgtggg gccctttgga gccatccaaa accagcaaaa
      421 gcaagacaat ttaagctaat tttactattt ataacaatag aacagaccat taagataaat
      481 taatgtcatt atcaagtttc tatgaaaatg acaaataccg ctatttcaag cagctttaga
      541 agctgttga
//
LOCUS       KCLJ01003580             699 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 399057cal ultra-conserved element locus
            uce-1963, sequence.
ACCESSION   KCLJ01003580
VERSION     KCLJ01003580.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 699)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 699)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..699
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="399057cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>699
                     /note="ultra-conserved element locus uce-1963"
BASE COUNT          207 a          123 c          122 g          247 t
ORIGIN      
        1 attatacccc tctgttcata ataaagagct gttttgtgca aagcagctca ttattatgaa
       61 tgtaagggca tgtttggact agtaaagcaa atcataaaaa ttgctgccca tgtcacgttt
      121 ttcctttgtc aataaaagat tttcctcagg gtcagaaaca attattgacc agaaaaaatc
      181 tcaagttctg tttggaaatt ttacctggtg atggtgaaca ttatctgcaa ggtctttggt
      241 gttaaggaaa tcacgacatc tgccaatctt tcaaattcca aagggtaaag aatgaggtct
      301 gttaggctgt catcgaacat gacaggctta atgtaaagtt tataacagaa aaagggcaat
      361 cttattgtgg tttattcagt tttatgttgc ttgttcagta gaaaagctca ttttttatct
      421 aatttatagc atttgaaata ccaaacagat tttttacata tctcctgagc tctcagctct
      481 tcttggctac cccttagtca ttcctttagg gagcagtctt aaatccttcc aatttagcat
      541 ctatgtgaga ccagacaatt gttttacttg agcatatcct tcagttgtta tagagctatt
      601 tctaactcca aacattttag tttaattact gcttagaata tttgctatat ttttatctag
      661 gttgcctctc acttgagccc attgggctga agaaagaat
//
LOCUS       KCLJ01003581             441 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 399170cal ultra-conserved element locus
            uce-6702, sequence.
ACCESSION   KCLJ01003581
VERSION     KCLJ01003581.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 441)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 441)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..441
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="399170cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>441
                     /note="ultra-conserved element locus uce-6702"
BASE COUNT          144 a           86 c           77 g          134 t
ORIGIN      
        1 tatcacatgc ttctggcaac ttaggcagga gagacaagaa agcatgtgat tgcatgttta
       61 acaagtcttc aaactttgtt ttgaatttca ccaaaagcat tgaagtaggc ctattgtttg
      121 aattactctc ctccattaag aacatgaatc tttacccctc caggctatgt tcatttgcat
      181 tttatctctg ccactcttcc acacttttat ttcactcttg accctgtttc taggagatgt
      241 gcgagtaaga agtcgggcag gatttgaaac agagagaaga ggttctcatc catacattga
      301 tttccgtatt tttcactgta agtatttaaa agcagataaa tgacaactaa acaaaggctt
      361 ccatcaattt taacaactga gcctctaaag agttagcagc atagcaagac aaatacttct
      421 taggaaaaaa aaatagaaga g
//
LOCUS       KCLJ01003582             436 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 399277cal ultra-conserved element locus
            uce-144, sequence.
ACCESSION   KCLJ01003582
VERSION     KCLJ01003582.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 436)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 436)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..436
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="399277cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>436
                     /note="ultra-conserved element locus uce-144"
BASE COUNT          142 a           89 c           76 g          129 t
ORIGIN      
        1 tgcatgaaac aaaatggatt atgaatttta aaattgccaa ttatgttgca tcacacagct
       61 cagagcactg gcacaatgat gaaccccaat ccagattttt cagcttaaat ggctttacat
      121 tcaagcaagc aaattaacca taaaataaag ttttacaaaa tatcccaaga aagaataaac
      181 tgcagataat aagcaccaat ctggtgttga atgctgccca agataccaat tgttttaagt
      241 cacgacaaag acagctgaat gctcatcttg tgggtataga gcatggatga ttgcttgcca
      301 tgagtatctt ctctcacaaa taacagtttt ttcgctctta attttctgct aaattggaag
      361 ctaactgctt cccacattgt cgtcggagca cctgcagctg tgctggattt ctgcgcacca
      421 tttcttttag gtaaaa
//
LOCUS       KCLJ01003583             625 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 399378cal ultra-conserved element locus
            uce-5085, sequence.
ACCESSION   KCLJ01003583
VERSION     KCLJ01003583.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 625)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 625)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..625
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="399378cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>625
                     /note="ultra-conserved element locus uce-5085"
BASE COUNT          162 a          125 c          134 g          204 t
ORIGIN      
        1 tgtggcttgc atagggagca taatatccct ttaacctgaa aaggctgtat gaatttgtaa
       61 ctgagtgagt ctttgctaat attgtttgta agagttcgcg tgctgttttt ataatgtttt
      121 cattgatgtc aagaccttgg tataaaaaca agactagcac tgtactaatt taccccatgg
      181 tctcctgtgt cttcctttgc ctctctcctt gagcaactgg catagctgca ggactgttta
      241 ctccacagct tatttcccct ttatctttga tgtcccagga tgtcaaaggc tgtgaattta
      301 atattgattt tataaagtac ttttactgta acatgtcagt taggattagc ttcaacctcg
      361 aggaagctca ggcagtgagc tggatttgca cgcaatgtgg ctctccagct ctcagactct
      421 tttcccgagc gaatgcttta tttataagag tgacagtgtg ctgtgaaagc agggatagca
      481 cacagccccc agctatctct gtgtcttgta tacacaacgt cagtgccctg tgtatacatt
      541 aggcttgaaa atgtaagtgg atcagagaga cgtatcattt gctggtatgt aaacagacag
      601 atgagtttat agatcgcatt aaacc
//
LOCUS       KCLJ01003584             630 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 399488cal ultra-conserved element locus
            uce-6081, sequence.
ACCESSION   KCLJ01003584
VERSION     KCLJ01003584.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 630)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 630)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..630
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="399488cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>630
                     /note="ultra-conserved element locus uce-6081"
BASE COUNT          139 a          173 c          128 g          190 t
ORIGIN      
        1 ggtaccaggt gtgccatttc atagtcatta gcaatttggg tcagagctgt ctttacctgg
       61 ttgtgttagt actactaggg acaaactcta ttcttcctgg ttttattttg ttctttttct
      121 tccgtttctt ctggggtgtc ctccaccagc tgtaggcctg gagacattct cttttttttg
      181 ccatcaagtc ctgtaatgac ctttatagta tttagcctca tttacattcc tccctcccac
      241 tccccatcac cacaggtgat ttccccatat tcaccttgcc cttgaaagaa gcctggggtc
      301 ccatttctcc ctccgcctcc catgagggaa agcagcctct ggggaaaacg cctggcaaaa
      361 ataacagagc caaaggattg tatgaacagc catattcccc tgacttgtca agctggctaa
      421 aggattgaca gcttcctctg ggaattagac aaaccagata gccttttgat gctggccaat
      481 cctttaatta gcttcaggac tggaccgtgt tctgcttgag ctccaggatg cacgatgaag
      541 aggcagggaa atctcttgcc tagactccac tgtcccatct cccctcacct aggaacttct
      601 gtgagatgcc tctcctcact ccagcagtga
//
LOCUS       KCLJ01003585             697 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 399597cal ultra-conserved element locus
            uce-3059, sequence.
ACCESSION   KCLJ01003585
VERSION     KCLJ01003585.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 697)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 697)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..697
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="399597cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>697
                     /note="ultra-conserved element locus uce-3059"
BASE COUNT          236 a          166 c          107 g          188 t
ORIGIN      
        1 ccagcttcca tctgaagtta ttataatgac taataaatca ctatatcagg caatcactgc
       61 attacatttc taatgtgatg ccacacaaaa caacatattt aaaagcaaac ttgcctcttc
      121 ttttaacctc tatttctatt attaacatta aaaaggtgca gctaccattt cagtcaccac
      181 cagaaacggc aaggaagacc acatatgtag tgaacataag agacagaagt gacagaaatt
      241 gataaaaact tcatcacatg gctgacaccc catatatcaa agccctaaat ctcattctct
      301 gcttgcctcc aatttccatc aaagcctgcc agctgcacat ttattgagaa gtttgtgatc
      361 tgacagctac tgtattacca acattaatga tgcatcagtc tccagaatta ctggggaaac
      421 agtccaattg attttattat tatacagagt tcctcacatt tcatttcagg cagcttccta
      481 ccacaaattt tagcaataac taaaaatgct acacagctga tgcacaaaat gctggggcga
      541 aagatggtta ccacagcttc atgccactcc attctccctc caggagagct ccaaatcact
      601 cagacaccac tgtgtaaccc atgagttatt ggtccatagc taaaagggct tgggcaataa
      661 acagtgcagc actaatattc actgaagaaa gctacag
//
LOCUS       KCLJ01003586             765 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 399708cal ultra-conserved element locus
            uce-5991, sequence.
ACCESSION   KCLJ01003586
VERSION     KCLJ01003586.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 765)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 765)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..765
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="399708cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>765
                     /note="ultra-conserved element locus uce-5991"
BASE COUNT          216 a          142 c          197 g          210 t
ORIGIN      
        1 gtcattctct gatgtctgca gatatttgat cagctattct gtgcatggca tggcccttct
       61 ctggcagcta cacgcatggg aaaaaaaaat gttatcaata agttcagagg agcctcagca
      121 gactcggaga aatttcacac aaacataaaa caaaacctaa cccctgtgac agggaaagtt
      181 tacattgcac cagattttag cagctttctt gtgcctttgg tgagatgtca gaagcgcagg
      241 tgattttaat tttcttgtac agagaggaat ggagaagttt ggaatttgca tgcatgatca
      301 ggacctgtgt ttgggaaaat gtaaactcat cacagtggaa aatgtgttgt ttggagtctg
      361 agggtgaaaa caaagctgag gattttggag agactgcctg agccagatgg cctggtgcat
      421 tcccagtctg gcagcccaac tgctccctcc tgtataatat acagccattt gttctgggat
      481 atttacgcta gagctgtttc catgtgaatg tttgaaaacc attaaaaatg aacatattag
      541 gagagataaa tttatttaat ttgtgtgaat acgtcgataa gcaggctgtg aatcaaaggc
      601 agagggagac tggataaaat aattagatgt ttctgaattg tgtgtggaga ggcagagcaa
      661 gaactccctg tcctcgcccc gggaccagct ccgcgctgct tgtccgggat aaacctcctt
      721 gggatgggtc gaggttttgc ctggagaagg ggtaaaacct cgggt
//
LOCUS       KCLJ01003587             497 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 399821cal ultra-conserved element locus
            uce-6176, sequence.
ACCESSION   KCLJ01003587
VERSION     KCLJ01003587.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 497)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 497)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..497
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="399821cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>497
                     /note="ultra-conserved element locus uce-6176"
BASE COUNT          155 a           86 c           99 g          157 t
ORIGIN      
        1 gtgcaggcaa cagggggtta attcaataaa ataaatataa aatactctcc aggctgttgg
       61 acagagctgg aaggggtcag aggttgctga gctgcttcac tagcacacta atcgatttgc
      121 tgtcaaggta gtggtgctgg ggtttcaagt aagagaagaa ttgagtgccg ctcgggccca
      181 atttccataa ttgctcactg cctttagtgt acaacctttt atgaaacaca aaaaatatat
      241 cactgaattg tattgattac ccattggtct gaataattca cttagtattt attacctgac
      301 cctcagaggt taaataaatc cactatctaa ctttggcttg tgagaaatat tacttattca
      361 ttgaaatgtg gactgattat tacacaatag gagtgtatct ttgttgttct ttttatctcc
      421 tcctggaaaa cttagtccct gcgagttaaa acaaatattt atggatagtg aagagcattt
      481 tccaaaataa acatgaa
//
LOCUS       KCLJ01003588             851 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 399930cal ultra-conserved element locus
            uce-223, sequence.
ACCESSION   KCLJ01003588
VERSION     KCLJ01003588.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 851)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 851)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..851
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="399930cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>851
                     /note="ultra-conserved element locus uce-223"
BASE COUNT          205 a          174 c          235 g          237 t
ORIGIN      
        1 ccaagaatga actgagcaaa agcacacact ccgtggaatg caaatatttc cagcacttac
       61 cgacatgctt ttagaacttc tgctgagctg gggtatatgg acaccgacat tgatggtatg
      121 atctgaggac taggtttgtg gctaattgga ggaggatctg ctttcatggg gctctgagag
      181 tcctccaacc cctctccatt aactgtatgt ccactgtgag ggctgttaag gctggtaaca
      241 ctgtttgtgg tagtctgttc agtagatttt ggagaaggtg ttgctgtgga aatggctgaa
      301 gatggtgagg aggcaacaga attctcagtc tttgtatgaa cagctggatg aatgttattg
      361 actttgtcac aggttccagt actcacattg ttattggctt ttcccatcaa caaggcagag
      421 agctgaggat tgtctgaact aagtaaacct ggtgacttag aatctccatg gctagggcta
      481 gaaacagcat ctgccgtcac ctgatggaca tgattaggaa gtccctctac actggcagtg
      541 ctgtttggtg tctctccaga atgcctgctt gtttcaggca ctgctgatgt gtttcctgaa
      601 ggcttgctct ctttggttaa ggtaatgcct tgttgtccac ctgaggtagc agtgtgagag
      661 gagaggtgat tgagagcagc cccctgtgtc actgaattgc taggcgtggc aggatgtcca
      721 ttctgattct gaataccagt gccagctgcc tggagatgct gggaaggccc agtggaagag
      781 agaggtcgtt caccattagg acctgccaaa tgtgaactct gacctttgtg aagcccctat
      841 gaaggaagga a
//
LOCUS       KCLJ01003589             596 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 400042cal ultra-conserved element locus
            uce-3973, sequence.
ACCESSION   KCLJ01003589
VERSION     KCLJ01003589.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 596)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 596)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..596
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="400042cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>596
                     /note="ultra-conserved element locus uce-3973"
BASE COUNT          187 a          108 c          138 g          163 t
ORIGIN      
        1 aggaaagttt ggaaatgccg gctgccgctg ctctccgatt tgcagctgcc tgaggcctaa
       61 gggtggagga ggatgccctc ctctggctac acacgctccc ttcccatcga gcctcggagg
      121 ctgaagagaa atcactttga acactgaggc ggggagctgg aggcaattac ttgtgattga
      181 tagcactaaa tatgaaaccg catgtacctc atccatgaag catggaatca gcagcatatt
      241 gttagtgggg gagatgaatg gggcttgaga taaccttggc aaattaggca tatgttagca
      301 ttaagctttg tcagtaagca ggctataaat tacagacata ttgtaactcc ataaactcat
      361 ctaatgaatt gaatgacagt ggtaatttaa ggcagaatgg aactgtttaa cccttttaag
      421 aatttagctt tatttctata ttacacaaca atccaaactg tattaaaagg ttggtatttc
      481 atataggaaa aaaattccac atttcatgta cattttaaca aacagttggc aacccgcaaa
      541 ttatttcact tgtaagttgg ttaaaagaat gggaaaagaa tggaatagct ggggtg
//
LOCUS       KCLJ01003590             462 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 400147cal ultra-conserved element locus
            uce-7159, sequence.
ACCESSION   KCLJ01003590
VERSION     KCLJ01003590.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 462)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 462)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..462
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="400147cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>462
                     /note="ultra-conserved element locus uce-7159"
BASE COUNT          148 a           84 c           82 g          148 t
ORIGIN      
        1 atgcactgac tggagcttca ttgtaaaaag ttattccagg atattggctt ctgtccaaaa
       61 ggtaagagta acggaggtaa tttaaatatt cttgagcaca ggaacagatc cctaagctcc
      121 gttgctctct ttgtcaaaac ccattctttc agaaaatcat tttctttact cattggacaa
      181 caaaatgcat tgtcaagaaa ttttatagca ataattataa aagatgtcca tttgaaccca
      241 ttgaggtctt actgatttta taatacccag cagacctccc tgcaggagaa tgctatattt
      301 atgttagcaa tatatgcgag aattgagatc gtaaaattaa atgaccacat agaactgtca
      361 tttatatgat gagcacctac aaatgtgaag gctggtttat cttgcaggat agggtagaac
      421 tctcagtgaa tgcttttaat cacgcatttc ttcactgttt ct
//
LOCUS       KCLJ01003591             696 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 400253cal ultra-conserved element locus
            uce-3071, sequence.
ACCESSION   KCLJ01003591
VERSION     KCLJ01003591.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 696)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 696)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..696
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="400253cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>696
                     /note="ultra-conserved element locus uce-3071"
BASE COUNT          189 a          125 c          190 g          192 t
ORIGIN      
        1 aagagaggct ttgaaggtgg aggttttgtt gtgagctgtg tttgggcgtg tgaaattcaa
       61 tcaaagcgaa aataattcca tcgccttctt caaagccctg caaagggaag ttgggcagaa
      121 gctgggacag gaaattgaaa tctgaattat tttaaactga tcgggttaaa ggcctctctt
      181 ttacaccagc acacttgttc ttttatttga tacttgaact ctgaaaattt tctgtgactt
      241 tctagggaga aggaggagca gctgaggcgg gtgacggagg tacagaggct gcaggcccag
      301 caggcaggcg ctgccctgga ggagtttaag cggcaggtgg agctgaactc agagaaagac
      361 tctgcagaaa tgaaacagcg ggtgaggagg tcacaatgcc agcctttctg aaactctggc
      421 gcagtgggat agcggattct gatcttataa tgccagaaac atgctccact tgagagtgct
      481 acatcaaaat ctttcacaat gtagtgtctt tgcagcgagt cagaaaggga tggtggcggg
      541 tgtttcatct ttctgacaaa gccagaattg tcattgttat aaagatatct gcagttatga
      601 tactgattag ggatttttca ggagtgagag tataaagggt tagtttatac accctatgga
      661 acaacgcttg tcatttctgt ggctcttcct actctt
//
LOCUS       KCLJ01003592             312 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 400363cal ultra-conserved element locus
            uce-5399, sequence.
ACCESSION   KCLJ01003592
VERSION     KCLJ01003592.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 312)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 312)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..312
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="400363cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>312
                     /note="ultra-conserved element locus uce-5399"
BASE COUNT          104 a           56 c           62 g           90 t
ORIGIN      
        1 aactcccagg cctccaggga cagaggcatc tgctccaaaa ggggtcattt attccatacc
       61 cttgttattt gcagcaaagt ataatggaaa aaattgactg tttgcttggt gcaatagggc
      121 atgactcttt acacagaaat aatagctaaa cagtgatgga ttctaaatct ccattacagt
      181 gaaagatttg aaggagtaaa gcagttagaa aaataattgg ttttcttgtt tagctttaaa
      241 aagcctttac acaccgccaa atggagaaga cttctcactt tattttgatt aacaaaggga
      301 acctacttag gg
//
LOCUS       KCLJ01003593             637 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 400454cal ultra-conserved element locus
            uce-2445, sequence.
ACCESSION   KCLJ01003593
VERSION     KCLJ01003593.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 637)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 637)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..637
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="400454cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>637
                     /note="ultra-conserved element locus uce-2445"
BASE COUNT          204 a          156 c          108 g          169 t
ORIGIN      
        1 acttttcaaa ctcactttta gaaagaagag attgccagct tcaaatctct ccagtggtga
       61 aaataagaaa taatcaaaga caccccaata gtcttatact aagaaacgac tatctggact
      121 tgtaaaacaa accttgtaat tatttcatta ctaaatgctt tattctgtca ctaatgcaaa
      181 aacccaacaa gcatttcata gttctgacca ggctcctggg ttttttctcc tccctatagg
      241 acaagctttt tgcaaaaact gaatgcaaga cccctgagga gcatacggga acagaaccac
      301 caaatgtctg gttgccatct gttctaccca tttactctcc caatatgtaa ataaacgtca
      361 gtgagcgcag ggaccagtga aacacacagt tgctctgtaa agcccacatt tctgcctctc
      421 ctcctgatga gcagagcagt ggcctcagaa gcacgctgag aatacaccat gaaaggctct
      481 tttgggactt gacagcttcc cctttgaacc cccctcataa ataaagccct cactgtctaa
      541 tggatgcacc cagtgtacaa ctcctgaacg aataaactaa tggctgaatg aaaaaataaa
      601 ctatcctaga accttagcag aagtgtgtgt ttttctt
//
LOCUS       KCLJ01003594             525 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 400565cal ultra-conserved element locus
            uce-7113, sequence.
ACCESSION   KCLJ01003594
VERSION     KCLJ01003594.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 525)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 525)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..525
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="400565cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>525
                     /note="ultra-conserved element locus uce-7113"
BASE COUNT          133 a          105 c          112 g          175 t
ORIGIN      
        1 gtagggagag ctgtgaaaga tcatttcttt cctaatgtga ctgttagatt tggctggttt
       61 agcaattaaa cttttccttt atttgttacc cctacagacc cctggttaga ataggatcct
      121 gaagttgagt ccgccagagc attgggctta catgattcaa ttaaccttta aggtagctct
      181 ggaagttggt actctaggag atccttttgt taattggcag cctgacacag acaattaagt
      241 ttgatcagat gaagagggca tcagggacat cattagcata ctgtactgaa gactacgtgg
      301 tgtgtaaaag ttgtttaatt tctgccaagg aagaaagcgg ggggctgggg gagccctcct
      361 tgcacataca gcattttgct tattaaatat ttcatttccc ttgccataag ctgcaaatgt
      421 tcccattttt tacccctcct ttttggtttc ttccactgca gtgaaatcca ctgaatgatc
      481 gttcctctct tattaaaact tctgcgtttc acttgaagta ttgca
//
LOCUS       KCLJ01003595             577 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 400673cal ultra-conserved element locus
            uce-4631, sequence.
ACCESSION   KCLJ01003595
VERSION     KCLJ01003595.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 577)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 577)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..577
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="400673cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>577
                     /note="ultra-conserved element locus uce-4631"
BASE COUNT          166 a          124 c          107 g          180 t
ORIGIN      
        1 tgaggatcag gcctaaacct ttccaaaggt gagtaaatgt gaagcctgga gctgtcattt
       61 cagtcttttc atctcttgaa taatcacctc ttccagaaac aggactctgg gtagggtttt
      121 cagtcgttcc cttgtagctg ttgatctgtt ctgctatttt acagcaagta aattttcctc
      181 tcagtgggtg aactgcacga tgaaccatag gcaaacttct gaaaaactgc aaacacttac
      241 actttactgc aaatgtaacc ataacaattc aaagtactaa ttttctacct catataatat
      301 gtgtaagtat gctttagtaa cactcacggg aaacataatt taacagtgcc tctgtcttcc
      361 ttacctcaag atgggaaatt tctctcacat acttaacaga aggccggctg tctgagcttc
      421 ccatttccag gaacatcttg aggggagttt gtttttcttt aacccttccc tagcgatgtg
      481 tcagcttcac tcagcttaag aaaatatgat attttggttc tcaagctctc ctgaaagaga
      541 gaaatgaaaa tatagtctgg gctctcacat gagaaga
//
LOCUS       KCLJ01003596             721 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 400784cal ultra-conserved element locus
            uce-1298, sequence.
ACCESSION   KCLJ01003596
VERSION     KCLJ01003596.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 721)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 721)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..721
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="400784cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>721
                     /note="ultra-conserved element locus uce-1298"
BASE COUNT          263 a          113 c          108 g          237 t
ORIGIN      
        1 gaaaattgtc ccctttcaat gatgtgctca acttcccctt taaaatactt tgtaatacct
       61 ttgttgtatt tttatgctgt gtattacaac atcacattat atttggatga cacagtaatg
      121 gagcaaggac aggttctaat attaagctct ttgctagact taaacattta aatgcaagta
      181 acttcctcca ttcacgagaa aacacagcat taaaaaatta accataagct gttagatgct
      241 ttacagagcc cccttataac aaaggcagtt ttaaaaaaag aactgtagta ctgttttcag
      301 caatttcttt atctctgttc ttctaagtaa gaaagcttat taacaagctt tgaacttaaa
      361 atcacattta caataatgtg ccatcaacag ttttataagc taattagaaa aaaagattaa
      421 ttaatgactg gctgctaata aaatggcaat catgaagaaa gaaaccaagg gtgctaagct
      481 tcaactacca ccaattaaga gctaattaca aacaaattat atatgtgttt tgctgtgggc
      541 tttaatttac taaaatggtt ttaattaaaa gagaaaacat gctgattaat tgaactgcag
      601 aaaaaatcta cagtataaac tgtgctttgt ctgtctcttt aattagactt gtaacatctg
      661 aaatcttttt ttaaggtttg ttaaggaaaa gatatacata attaagggag cctaagaatg
      721 t
//
LOCUS       KCLJ01003597             535 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 400896cal ultra-conserved element locus
            uce-5443, sequence.
ACCESSION   KCLJ01003597
VERSION     KCLJ01003597.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 535)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 535)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..535
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="400896cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>535
                     /note="ultra-conserved element locus uce-5443"
BASE COUNT          158 a          126 c          113 g          138 t
ORIGIN      
        1 gttcccgccg ggaacggccc gcagcagagg gtgctgtctg cccgcgctag cgccggctgc
       61 acgggaaggt cactcagcct attgataaat cactgtgccg tgattcctaa ctgacagctc
      121 aaactaacat caagctggat gagagagaac aaaaggccat caagcagcca ttttcttgac
      181 acttttattc aatcaccagc agattgctta cgacagcaat agcagctgtt ttgtcttcat
      241 ctttccacat ttgataaaag gtgtcaactc aaatttttgt aaataattca cttaccccta
      301 ctgcacacac cagcactgtt cagcatatgt attctgcgcg agcagatcac tgaggcaggt
      361 cagggctcaa tgatatcagc tgaaggtcat ctgtgatcta aacggaagca ctgataaagc
      421 tacagtccct caaggtcaaa gataagaact acactgagat atttgtaatg tggacgaaag
      481 gttaaacaat agaaaagtat ggtattgttt cagttaacac actctattgt tcctt
//
LOCUS       KCLJ01003598             431 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 401004cal ultra-conserved element locus
            uce-6371, sequence.
ACCESSION   KCLJ01003598
VERSION     KCLJ01003598.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 431)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 431)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..431
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="401004cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>431
                     /note="ultra-conserved element locus uce-6371"
BASE COUNT          108 a          132 c           94 g           97 t
ORIGIN      
        1 aacagcgggg ttgcgccaaa tttcaagcaa tgctgaaatc ccagcaaagc cccgtcactt
       61 tggtgctaga agggagcctc cagtgaaagg gttaagccaa gctttcagtc ccctggttca
      121 aaccgccctg cccaaattac agcagcgcac acatccaaca gatgccgttc agacaggggc
      181 tttccttgcc ctgaggtaca gttcagtttg tccattctac tgtgcaatta cagaatcaat
      241 aaaacatccc tttgaaactc cctggactag tgccgacacg cagacagtag tcaagctgac
      301 attttttgct gtttccgtta ttaccgccgc ccgggcgccg cagagctgag gttttgttcc
      361 tcccccaggc gataaaacag gcaataacgc agcacttccg aaaagcacgc gtgccccacc
      421 ctcctcctct t
//
LOCUS       KCLJ01003599             625 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 401114cal ultra-conserved element locus
            uce-1689, sequence.
ACCESSION   KCLJ01003599
VERSION     KCLJ01003599.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 625)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 625)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..625
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="401114cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>625
                     /note="ultra-conserved element locus uce-1689"
BASE COUNT          210 a          108 c          114 g          193 t
ORIGIN      
        1 tactttctat tttctcttcc aaaagagaca aagggaataa atacttaaaa cccagtggtg
       61 acgacagtga agcaatcatg cagtcgctgg atacctttgt ctcagggggg catgtagtaa
      121 tttttacatg tctgccactg ggtgtcaaac ctttcttttc ttcccctttc cattttggat
      181 ggccaaactg attatctaaa atagaaaatt agcacacaat ggctttactc tgtgataccc
      241 cttatgcaac taatgggcaa agcttgttaa ttggttgtaa atgccagcag gttgccaaga
      301 taatacttca gaaataagcg ggtattctga taattacagc aatcttcatc tataaaagct
      361 taagtagatg aagtactggc tggcttaaaa ccaagattta tcccgctgca ctcgcattaa
      421 aagaaaaaat aagatgaaaa caataatgta gcaaaacaat tatatagcag gaagcgttgt
      481 aggttttaga gattgtgaaa actcagaaag taaaacagtg ctgtaataac cagttatgga
      541 aaaataggcc atttacattt gtgtataatt aaatagtagg ctatgcaatt tcacttttta
      601 aagtaaactg ccttttcctt ttttt
//
LOCUS       KCLJ01003600             606 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 401223cal ultra-conserved element locus
            uce-6080, sequence.
ACCESSION   KCLJ01003600
VERSION     KCLJ01003600.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 606)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 606)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..606
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="401223cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>606
                     /note="ultra-conserved element locus uce-6080"
BASE COUNT          175 a          119 c           99 g          213 t
ORIGIN      
        1 tgcttttaat cctttatata accttattaa aaatttcaag atggatacat tcaaccaccg
       61 aatctgacaa acatctggtt tacaatagag tcatgtgatg aaattccatc cagaatcaca
      121 tttactcttc agtatgtttt ctcctactat cattcataac acagaactcc tgtgttttgt
      181 ctgtgatata agacagtaca agtgtatgtt tttattagga ataatgcaca gtcgtttccc
      241 ttatagaatt taaatctgcc atctatgcgt aggtatagtc aaatatattg atagcctccc
      301 ttgtgggttc tgctgacact tgggtttaat tgtagtgaac tttgaattcc tatcttaagg
      361 tcagttatta actattgatg gattctcctt ttctccattt aatgctaaag tattcatact
      421 aaccaagaca gatgagaatg ctgaagaaat ttttcaacgc catggctgag caagatacct
      481 tcctctgtgg cttttctaaa agtggtgatc actcatgctc agcttgtgct ctgctgaccc
      541 ctcaccactt tttgctctga cagtgctatc ctgtatgctg ctattaggag aaaagaaaat
      601 aaaatt
//
LOCUS       KCLJ01003601             690 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 401334cal ultra-conserved element locus
            uce-2441, sequence.
ACCESSION   KCLJ01003601
VERSION     KCLJ01003601.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 690)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 690)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..690
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="401334cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>690
                     /note="ultra-conserved element locus uce-2441"
BASE COUNT          202 a          116 c          170 g          202 t
ORIGIN      
        1 ttggtgattt agtaaaattc cttaaccaca ttacaaatga aagctaatgt tatagctgaa
       61 gtttctttgt ttgaccttct actcctagag aaaggaaagt ctttgctaga agacagttca
      121 ataaatgata tatattgacc cttgttatgt aatatgattt cctttccctt gcaagggttg
      181 ctgttgtaca ggatagggct gggatcatgg tcgtggaagc gtatgggaat gtgtagacta
      241 aggaaggctg tcacagcagt caataagatc tgagaggtgt tgactaattg cctgctaatt
      301 acacagtaaa ttgtctaatt aagctgatgg ttaattaggg tacgcttgca cagcagtctt
      361 atggaatttt tgtctgatgt ctgggaagca gcttgtgtaa ttggcaaact ggtaaggact
      421 ggcagagccc atggctggga agcgcgctgc cagtagatga cagaataagg atgcgtttgc
      481 acaaaggttg tcatgtgaac acgcaggggt ttgttagcct tctccagcta cgtggcagcc
      541 agcacaacca gcatcgagct gagagctgct ggaagctgta aataaaataa ggcttaagca
      601 tgtaatatta gaaaagcagt gacatgtgct ctttatttta gtcagtttga actaaacaca
      661 gggtatcaaa attctcatgt acagaacttc
//
LOCUS       KCLJ01003602             320 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 401444cal ultra-conserved element locus
            uce-1597, sequence.
ACCESSION   KCLJ01003602
VERSION     KCLJ01003602.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 320)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 320)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..320
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="401444cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>320
                     /note="ultra-conserved element locus uce-1597"
BASE COUNT          110 a           67 c           51 g           92 t
ORIGIN      
        1 tttttttttt attttatgag ttgttaaaaa gatgcagcct attctaacag gataaatatt
       61 ttaaccattt cacttcgagt taatgaaggc tcacaaatga gcaacactcc tcattgagga
      121 aaacaaaaag ctgttgtcga caaagcgaca gcacacacac aaaagaactg tgtaaaaata
      181 actaactgta ctgtgttccc atactcttta gaagttgctt tacaatggga tgatatgcac
      241 atgatcttgc tgcaaacttg ccatacaact tgcaaataca cgtagcctac agccttacca
      301 ctcagtccag aaagctgcta
//
LOCUS       KCLJ01003603             624 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 401541cal ultra-conserved element locus
            uce-7819, sequence.
ACCESSION   KCLJ01003603
VERSION     KCLJ01003603.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 624)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 624)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..624
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="401541cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>624
                     /note="ultra-conserved element locus uce-7819"
BASE COUNT          175 a          125 c          136 g          188 t
ORIGIN      
        1 ccctctccct gtagcagaca ttgtgtatca attggttatt cttctcacct ccctcatatt
       61 ttattgtgat gaaggagggg gagttgttgc tattgttgca aggaagattc tggaatccgt
      121 gaacacaaag tattagtatt ttaaataatg agaaaaaatt ccacatggaa agctcatctg
      181 gctgtggcag tttgtgactg aatgagagaa aagtgcccta gaagctattc attaggaatt
      241 cactggaagc tctcaaacaa gcctggcaga agctgaaatt gaagtggtct ctgacctaat
      301 tttcttctgc atgaaacatc tgcatcaagg cactctttga tgtattccac ttggctctgt
      361 ctacagtatt gtatcacatg gcttcagcgt tgcctcagtt ttaaaagaca tttccagcct
      421 gtagaaggta atgtgatgtt actgttaccc aaactaatca ctcaatgtgc tcccgaaata
      481 gaaacaatag aggttcagac aacggtgtct gctttgcagt cgttgttgct gcctaagctc
      541 acggcctaga tctgtgatat tcatctcatg taattcatca acaccaggaa ggggagggag
      601 aaactgtgag ccttctgtgt aata
//
LOCUS       KCLJ01003604             661 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 401652cal ultra-conserved element locus
            uce-1263, sequence.
ACCESSION   KCLJ01003604
VERSION     KCLJ01003604.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 661)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 661)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..661
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="401652cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>661
                     /note="ultra-conserved element locus uce-1263"
BASE COUNT          208 a          159 c          133 g          161 t
ORIGIN      
        1 gaaaataatg atgtctccta atgacagctg tcaaagggat ttgtaaaaag cttcctggaa
       61 aacccagtgt acaaaaatct tgacccagtt gtcattaatt ctgcctggcc cagtcactcc
      121 ctcctgtagc aggagcccac tcctgtgctg gctgatgcaa aggcagtgtg ggacaggcag
      181 tgagagagag cagggcagct gcaaaccaaa atcaccctgg ggaaactaga taaagttttc
      241 aacaataaga ttccagagac tgctgactgg agaaaagctc aatattttag tctcagtaca
      301 aatttgcttc aatcttatac aactcccatg cagcagcatc cacagctgca tgctgtaaac
      361 aacaaacaaa tctatttcca tcagccctgc tgatgctatg agaaaagtgc ctgagcataa
      421 gacatgcaca gatgtagagt ctcacctgag cctagtgctg ccctccattt ggcccctcta
      481 acttaatatc gttgttacaa agctattggt ctcctggtag cgagctggct caatgcagag
      541 cctcttcttc cagctaatct gacaactccg atccaagaag catcaagggc ccaattaaga
      601 agacacatct tatcaaggag cttattttgc ataacagaat acaaatgacg aataaaaatt
      661 t
//
LOCUS       KCLJ01003605             734 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 401765cal ultra-conserved element locus
            uce-1631, sequence.
ACCESSION   KCLJ01003605
VERSION     KCLJ01003605.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 734)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 734)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..734
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="401765cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>734
                     /note="ultra-conserved element locus uce-1631"
BASE COUNT          221 a          128 c          132 g          253 t
ORIGIN      
        1 ttcaattaat gaaaaatggg aactgcttgg ggtatttgca tttttattac tgtttgtggg
       61 ttatgtgtac atttttgtgt gttgaagtac actgtctgtc tgatttctaa tttggagcac
      121 aaatatctct ctttcaatcc accatgtata tttcaaacaa gctactcatt ctattataaa
      181 actccatagc cttttcctct tctgttgatt ttttttattc catgctggtc tcctgtctga
      241 ctttaataat tttagttctt taatacataa aaaatgtaag taaaatatgc catgtattat
      301 gggtatgcac caagtcaact ataatgcagt atatctgata tacactgact gtcatgcttg
      361 agtgaatgtt aatagaattt attctgaagg tacatgttag agacatctac tgtttaacta
      421 tttactatac ctttaagatg aaaagtgggg ttgtcactgc atatttcagg tcacactgat
      481 ggctcaaaaa caaatacaca gattcagtac aaatctgcat acctgaagct gagaatacag
      541 ccaggatatg tttcatgctg ctgtattcat ctcacttttg acaaaagcca aaaaagtttc
      601 atgtaattca tttcacgcta tgatgggctg ggtctcagcc aaagagtgag atacaagaat
      661 ctggcaaaaa gcaatatagg gattctgtta cccagagacc ggtgatggca ctgtgcagga
      721 gacactattg tcct
//
LOCUS       KCLJ01003606             856 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 401872cal ultra-conserved element locus
            uce-5019, sequence.
ACCESSION   KCLJ01003606
VERSION     KCLJ01003606.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 856)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 856)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..856
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="401872cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>856
                     /note="ultra-conserved element locus uce-5019"
BASE COUNT          220 a          144 c          167 g          325 t
ORIGIN      
        1 gtggcatttt gctttcatta tccctcatag atgtttaaaa cagtgcctgg tgttttaaat
       61 tacttctgct ttactttaat atgagaactt ctgtttgaat agcctattgt tctgttagct
      121 actacattgc acttcaaacc acagagtgtt attttttggg atcatataaa atatttgttc
      181 tctccctgct cccaacctat aaacttcata tcttgataag gagtttctaa cccttggaaa
      241 tactgcttta caaattcagc taatgaccca aatacagctt gtttgttgtg tatgagttgt
      301 attaaaataa catactctat gtgtattgtc attaatgata tgctcatttt gataatggag
      361 ctgcagtctc ttagtatgta gtccttgggg agatgctgca tttttttaac taagtattgt
      421 tctggctccc ttccttgatt ggcccagaaa tagcaatcag ctggggagca ggatgacatg
      481 cctcttagcg atccctttta tctttgagat gagtatcaac attgtatgct tcctaatgga
      541 agtgtaattt aatgaaatct attgggtaaa catacttcag atgttcaaag gaggtgacaa
      601 aatttttgct ggcagccagg acctggctgg tttccagctt gcctttagct gctatgcata
      661 tagcattgag agaggcactt aaaataggaa cacaaagtgt tgtttctatt gtgtttttgg
      721 ttgtggattt ttttttctct gttttcaatt ttattttttg gtatttttat tagtgcccta
      781 tgacttccag gcttttctag taaaatgctg tgtgaggtca ggtttcatag atgacagtgt
      841 taaactcagg ggaaat
//
LOCUS       KCLJ01003607             708 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 401981cal ultra-conserved element locus
            uce-2773, sequence.
ACCESSION   KCLJ01003607
VERSION     KCLJ01003607.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 708)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 708)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..708
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="401981cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>708
                     /note="ultra-conserved element locus uce-2773"
BASE COUNT          191 a           97 c          155 g          265 t
ORIGIN      
        1 tttatattat tgttaatgca gcttggattt aaatgcattt tttttgtgcc attagatttg
       61 attcctcagc gagactttct aagaatatga ttaaccctct gggtcatctt ataatgtaat
      121 tattaatgat tgattctgtt tatccttggg atcaatatga gaagcggggt tgatttcttg
      181 cattcagtaa acatgatctg gtgacaagac tggtattggt ttattactcg gaacgtgttt
      241 gatgaatctg aagtgtgtaa ttagttttat ataatgatgg tgatatgtgg ggttttttac
      301 atgacttagt taatatggcc aatagtgtta acatctcctg ccactaatag ttagggtggg
      361 gatgtatagt aattgatctt cctgggagtg ctgtaatgta aaaacaattc cggctgtttg
      421 aagtatattt tacaagtgtg cattgggcct ttgggatgtt atactgaaaa acccaattgt
      481 acagttacca tgggaaccca attagaatag attgctggac aggctttcat cttgaccaaa
      541 aatctaatgt actttaaatg ttttcatacg gaattttgtt cctatagtca cttggtgtaa
      601 tggctggttt ttaattttag tgctgaacca gagtgttctg ttgagggtcc cgaggactta
      661 tccttcaagg agaatcttcc tttagtgttt aaaagttgat gaactgag
//
LOCUS       KCLJ01003608             366 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 402089cal ultra-conserved element locus
            uce-4602, sequence.
ACCESSION   KCLJ01003608
VERSION     KCLJ01003608.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 366)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 366)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..366
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="402089cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>366
                     /note="ultra-conserved element locus uce-4602"
BASE COUNT          105 a           70 c           89 g          102 t
ORIGIN      
        1 ggcagggaat gctctgaaat gctcaaaaca gccctttggg aggcctgtga tctattgttc
       61 ttccattgag ctcatgagcc cctataaaac acttaccttt cactagtatg attaagaaaa
      121 ggccaatata gctttcctgc tcactggagc atgaagcgtg tttaatttaa taatgctgat
      181 aaatcttaaa gccaggagca tttggctaac acatgaccca ctttttcaat caattggaag
      241 catttacgta acagccttgc agggctcctc ctgcaaggga tgtggagctg gggggcgaat
      301 ggctttagac tgaaagaagg gaggattaga taagatttta ggaagaaatt cttccttgtg
      361 agggtg
//
LOCUS       KCLJ01003609             661 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 402193cal ultra-conserved element locus
            uce-3262, sequence.
ACCESSION   KCLJ01003609
VERSION     KCLJ01003609.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 661)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 661)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..661
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="402193cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>661
                     /note="ultra-conserved element locus uce-3262"
BASE COUNT          213 a          148 c          120 g          180 t
ORIGIN      
        1 taaacaagga ataaaacatt tttatacttc tccctaaact tatttgcttt ttgaaaatac
       61 ttatgcagca caaagacacg agtttagtga gaaatacagc caattcctct tgtttaattg
      121 aaacatttat gctttttgtt ctgcaaaaag caatgaatag taatattgca agataaatac
      181 acaagaaact tatagatatg attgtaaaac aacatcatcc taatgtttcc acttaattac
      241 cctgaaatgt attctattta atattcatta ctcaaaagcc aatttaaaag agaatgaggt
      301 gaagggactt attcagaaag acggactgtc attcactgca atagttatct aatatacaga
      361 agttaataaa gcagattaat ctacaagtcc ctttaagcca tcactgagtt tagaacaact
      421 gcctctttga cccctaaccc tcccgctgcg caccagtagc aggtgccagc tgcgctgaaa
      481 tgatggctgc ggcgttttaa ggcaaagcct tttcttgctt tgcttctgac cagcagctga
      541 ccctgtagaa gcgattgttt catgcgctgg cctaaaggct acacaaacca gcaagggata
      601 aacaaaagca gacacggagc agctgcctcg cccggggccc tgcggcgccc gcacctcgcg
      661 c
//
LOCUS       KCLJ01003610             526 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 402304cal ultra-conserved element locus
            uce-6557, sequence.
ACCESSION   KCLJ01003610
VERSION     KCLJ01003610.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 526)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 526)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..526
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="402304cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>526
                     /note="ultra-conserved element locus uce-6557"
BASE COUNT          175 a          102 c           98 g          151 t
ORIGIN      
        1 tatcaatgcg aagctacaga agcaaccaga gagaaagttc tcagtgcatg ccaaatattt
       61 ggggaaggtg ggtcaagtga tggatgaaaa ggttatagat aactgtgctg gttctactcg
      121 tctcaagccc gccctacact aacactggac attttagtgc tctaatctgt tgttacagac
      181 ctcttccatg ctcagaaatc aatcacttgg aaagctgatg tggctctgtt atactaatta
      241 aactttgttt tgcaccagag tcctgcattt gcagtgtgtg tacagtatgt aaattataca
      301 aattacaaga aaagttgatt agtgtaattc aaatctcagc gcagttacta aaattaacag
      361 tgaatacaaa ttatacagaa tcacttcagt gctgctgaga agttcctaaa gcatgttacc
      421 aaattcacag aagtggacac caaaacaagg aaaaacaagc ttacagacaa ccgttcaccc
      481 aaccttatta attcttcatg gctattattt agggttaaac atttct
//
LOCUS       KCLJ01003611             479 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 402411cal ultra-conserved element locus
            uce-3194, sequence.
ACCESSION   KCLJ01003611
VERSION     KCLJ01003611.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 479)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 479)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..479
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="402411cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>479
                     /note="ultra-conserved element locus uce-3194"
BASE COUNT          139 a           81 c           92 g          167 t
ORIGIN      
        1 ctgctcctac ctttgccaca cgacataaat gcaatttcga tttcattagt ggagggaact
       61 ctctgaaatt tttaaaagtt ataacatttg attgggggta gttaatcagt gttaaccctg
      121 agcagctctt gggctttatg gattcaagca ttatatgtgg ttgcactgct ccagcaaaag
      181 gttaagtatt aatggaaaat gttcacagct cttttactca aagaaaacat gttacttgta
      241 agttttcttt tgattttact tttacagtta cattgaatgt cttcattcat ttagccatcc
      301 ataaagcaaa tattgttgca catgcagtgg ataataagtc tttttaggac tacttgtgtg
      361 gtatgtcaca gatcattaac tgcaagtaac cacctgactt gagggaagtc tggaagcatc
      421 attacagtga agtaagcttt tatttctgta tcactgcagc acattgattt gtaggaatg
//
LOCUS       KCLJ01003612             724 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 402516cal ultra-conserved element locus
            uce-5494, sequence.
ACCESSION   KCLJ01003612
VERSION     KCLJ01003612.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 724)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 724)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..724
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="402516cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>724
                     /note="ultra-conserved element locus uce-5494"
BASE COUNT          237 a          144 c          155 g          188 t
ORIGIN      
        1 ctgctgtcat attggtgaca tgacacagat attgtcaaga aaaagtaaac tggggctggc
       61 actcaaaggc agctcgtgaa gagatgagca gtcgaacagc catattcaat aaaaaagagg
      121 aacaggattc ctttagaaaa tgtattgctg ttgtggcaac gtgctgctgc cactgaaggg
      181 actgatttgt tatttagcat gtagtcttgg actgtctgtc attctgggtg ctaatgctct
      241 gctaaaataa ctcattggga gctgtcagtg ggatgtttac ataggccccc aatcttttct
      301 tcatacaagg aaatttttta ctggaattca tcttcttttg atctcacatt caaagcaaca
      361 gcagcttgat agacatgcaa gtctgaaagc aaatccagac gctgaagata aaccgccaga
      421 gtatgacagg caggagcatc taaagcttat aaaaatgaag agaacagcat gtcgtctgag
      481 tattacaata gcagaaatca agagacatat taggtggaac tgatcagcca caaaaacagt
      541 tcaaaaggca gatcatagaa acagaagact aagctagaat aaaattggaa agatctgctt
      601 tacagaggca tcacctcctt tctgagcacc gcggcgtttc cgctccagca tgtaaactta
      661 aaaaagaaca gggctggtgc tgtctctact aactttctta ccttcaactc accaattaat
      721 ttgc
//
LOCUS       KCLJ01003613             540 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 402626cal ultra-conserved element locus
            uce-4917, sequence.
ACCESSION   KCLJ01003613
VERSION     KCLJ01003613.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 540)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 540)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..540
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="402626cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>540
                     /note="ultra-conserved element locus uce-4917"
BASE COUNT          189 a           81 c           84 g          186 t
ORIGIN      
        1 aaaacttctg atgacgttca tattttcaaa gttctaaatt ttataaagaa gtattgttat
       61 gacttttctt tttaattcca aggtgaacgt ttaaaaaatt cttagacaag tgtgtgtatg
      121 cccttcaagg taattagcaa gtttcaacag tgattggtac aaaacaatta ttgtcattga
      181 tcagcactga acagataatt ttaaacaaag tcattgtgtg ctcagcagat tacagcttgt
      241 taacgggcaa gttctaaatg acctcttaag ctagtcaaat caatgatgca tattcctcat
      301 taagtaacat caaaatgtaa gtggtcttat aaataatgtt tattttaagc actaaaacaa
      361 atggcaaaac cttgatatat caaaagccat ctgctcgtgg tttttttttg ccataggatt
      421 acttttgttg ctgaaaattt acaggaattc taagagagag aatcatattt tgcctcaaac
      481 tgaaaccgat ttaaacaaga tctctgattt aattttaaaa gattaaactg atagctctga
//
LOCUS       KCLJ01003614             681 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 402737cal ultra-conserved element locus
            uce-3492, sequence.
ACCESSION   KCLJ01003614
VERSION     KCLJ01003614.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 681)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 681)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..681
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="402737cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>681
                     /note="ultra-conserved element locus uce-3492"
BASE COUNT          228 a          104 c          137 g          212 t
ORIGIN      
        1 caggatgttg cataaaaata atcacaggat tcatagtggg gagaagcatc taggcttcag
       61 ataacaacag tgctagttcc cacataagtc aagctgtact tgttatgttt aggagaaagg
      121 aatgagtgag tggttttgca tacaatgttt tactaaaatt actcctactc ttggaataaa
      181 ctacagagtg caaatgccag gatgattttt tgttgctgtt cttgaagacc tggtagattg
      241 gttaaggtag agaaacaaat gtagttgctt tgatttatca cttgtgacat tagcgtgtac
      301 tataccgttc tcctggaaac aaaatggttg cacctgagga cagtgatata aacactactt
      361 tgattatttg aaacaaacca ttaggctttg atgaaagaac cattacttta gtagaccttg
      421 tacagagagc gcatttggag ataatggatg agcagcctac aaattgcttg ctttgaattt
      481 aaagaagtca catgtttgtt tgaacttcat ggcataaaca gatatcagca agacaagcta
      541 atggcatact tacagcgtag ttgaaaaaca ctgttgcaaa ctttacttgc aagactttaa
      601 ttttagaatg catactgaga aaaatcaatt aactgtttga tgtgtataca acgtacacat
      661 atgtatatta cttgtattaa a
//
LOCUS       KCLJ01003615             666 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 402847cal ultra-conserved element locus
            uce-5346, sequence.
ACCESSION   KCLJ01003615
VERSION     KCLJ01003615.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 666)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 666)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..666
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="402847cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>666
                     /note="ultra-conserved element locus uce-5346"
BASE COUNT          148 a          159 c          195 g          164 t
ORIGIN      
        1 ccctgttcta ctcccgagct accagcacca ctgcttaggg catgtctgga gctctggtca
       61 ctgtgtcccc gagcttaatg ctccttcgga gagactttga tggcacagga ggcactgccg
      121 cggccctggc tcccgtaaag cccagccgga ggccagcgat ctcagctcag cccgcttgcc
      181 ccgctgagga gtagagatta taatggtgtg ttgtatattt tttaatttcc taaaggtaac
      241 tgttcagtcc ccacctaatt ttacacagca tgtgagggag cagagcctgg tgacagatca
      301 gctcagccgg cggcttgtcc gtacctacca gctgtacagc cggaccagcg ggaaacatgt
      361 gcagatcttg gacaacaaga aaatcaatgc gatggcagag gatggggatg tgcacggtaa
      421 ggacacacga tgggggaagc tggggaggtg ttctcagccc agctggcgat tgatgatttc
      481 cgtcctgttt gttagccaga aatcgttaaa atcgttcggc ttgtgggggc ttgtaaaagg
      541 agaacatagg ggtcagtaat cagcggctgt gtgattcaag gtgagggcag gtttcctgtg
      601 ccaagggagg ggaccagttc ttgaaggata gcttctttcc ttttaattct tggtttgcac
      661 ctgact
//
LOCUS       KCLJ01003616             462 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 402954cal ultra-conserved element locus
            uce-6427, sequence.
ACCESSION   KCLJ01003616
VERSION     KCLJ01003616.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 462)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 462)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..462
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="402954cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>462
                     /note="ultra-conserved element locus uce-6427"
BASE COUNT          148 a           87 c           68 g          159 t
ORIGIN      
        1 tgtccatctt catgtacctt ttccatgtca gttctgttta ctaagtgata ttcaacagat
       61 ttcctatagt gcaatgaacc ttaacaggca gcttttaatt gcctcgcata ggaaaccaca
      121 tcactattaa ttccacagca aaagtataaa ataaaactat tgcttctcag actctagagc
      181 aattagacct ctcggctatt tggctaactc tgcttcatga tacccagtgc agttaattat
      241 attttttgat gttaatagtc tctgtcagtt tcaagcataa ctcctctttg atgaatattt
      301 aaattatatt tgaataaaaa aatgatcttg gttacatttc atattcagca gtcatcacag
      361 cttaataaag gtctcctcag aaagggttga gataaatggc tatatgaaca catgtataaa
      421 gtcctaaatc aacttatcag ataatgtagc tgttttggct aa
//
LOCUS       KCLJ01003617             509 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 403061cal ultra-conserved element locus
            uce-309, sequence.
ACCESSION   KCLJ01003617
VERSION     KCLJ01003617.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 509)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 509)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..509
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="403061cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>509
                     /note="ultra-conserved element locus uce-309"
BASE COUNT          162 a           99 c           84 g          164 t
ORIGIN      
        1 ttttatagac ttctctcatt aaaagtcacc ttcagaaaac actgctgcac cttacttata
       61 atcaaatgac acctcataac cacctaacca tttttaatat cctctagaat ctattgtatt
      121 ataccaaggc tcagacactg tctaggtagt caaggaaagg agtataccat catatttaaa
      181 agcagttatt gggacagctt ttacaggcag tgggctaaga caattcagaa acaattgctt
      241 atgtgatagt ttgaggattt gtccctgtca aacagttaat attgctttaa tacatgaagt
      301 aggctgtata agacagcaat aatgaaaaat gtcaggaaag acaatatcaa ttgttattca
      361 acatccacat caaagattac ttttttgtca gtagctttca gaaaatgtat tttccatcag
      421 atctgattgc attcctcttt gaagtgctcc atcctcctgg tagatttaat gtgacatcta
      481 ggcacttttt agtccctggg cctctgagg
//
LOCUS       KCLJ01003618             417 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 403168cal ultra-conserved element locus
            uce-6353, sequence.
ACCESSION   KCLJ01003618
VERSION     KCLJ01003618.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 417)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 417)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..417
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="403168cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>417
                     /note="ultra-conserved element locus uce-6353"
BASE COUNT          119 a           81 c           93 g          124 t
ORIGIN      
        1 cgcatataaa tcattattgg cgaacatctc agctcttgag ccaggctgtc gcttgctgct
       61 gctcgtggtg cagcccagac ataaatcata attcccctac aatagatcct tttgcagccg
      121 ccatcaggaa aagtgtgttg gttttatcga ttttttgaca ccagggccct ggcaacggcc
      181 gctctgaatc attatgaaat gaaactgatt aggaattcat ggaatactaa ataaacttta
      241 cgagcccgtt gtaagttttt tgatgcatgg ggagcggaaa atgaaaacta atgatataaa
      301 aattacacag cgtgctgagt attattatac tgctattgat ttgtttcaaa ctgtacatca
      361 aaatcgaagt gtgctgggtg tgcttggctg caaggctgat gctcaaaagc ttttgag
//
LOCUS       KCLJ01003619             649 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 403276cal ultra-conserved element locus
            uce-2937, sequence.
ACCESSION   KCLJ01003619
VERSION     KCLJ01003619.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 649)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 649)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..649
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="403276cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>649
                     /note="ultra-conserved element locus uce-2937"
BASE COUNT          221 a          126 c          110 g          192 t
ORIGIN      
        1 ccaagttcat tgtactacat ttcattactg ctcttcttcc ttctaagtga agactaatgt
       61 aaagacaatc actaaagaag cagcaatcat aataccctat actaactaaa ttcagactta
      121 tggctaccca caggagaaat acatgacaga tccattgttc tgtattagca ggatattgtc
      181 ccagtatatg aacacatgca aactttgaag gctttgaata tttaaggcaa gacactagtg
      241 gctcatccca gtgggaacca cagaaaaggg gaacctgatt aaatttaatg tcattgtcac
      301 ttttttttcc attgctaaga attatatagg tagccatagc taccacactg ttcagacacc
      361 atgaccacaa tattctccct cagaggttgg cgtcaagggc tgaattattc actccaagaa
      421 tgtgattcat tgctagatgt gattctctcc cattaaaaga tttgtcagta cataaaatac
      481 atgtacatat aaaatcactg ttatgcaaaa ggcaccaatt tttattggta tgagtacatt
      541 cctgttgaga aaactctgaa gtaactgagc agctttttac tgtttactgt acaacaaatt
      601 atgaagtcga aaactaaggc aggaatatgt aagaggctac ttacagaaa
//
LOCUS       KCLJ01003620             542 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 403384cal ultra-conserved element locus
            uce-4070, sequence.
ACCESSION   KCLJ01003620
VERSION     KCLJ01003620.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 542)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 542)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..542
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="403384cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>542
                     /note="ultra-conserved element locus uce-4070"
BASE COUNT          192 a           97 c           84 g          169 t
ORIGIN      
        1 taaaataata ataataaaaa gatttgaagg tattttaaag ataatttaaa tataggactc
       61 ttttcatcta gctatcactg cagtaatata aatgaagcaa attaatttta atgctccaag
      121 gttctgattc tgtgtcactg tcactgacag gatccaacta gactttatga gatggcattt
      181 gactttatgg aagtgagcac tatgcacgca tttacaattt tacagggact ttaagctgtc
      241 atgctgaaaa atgtttataa aacattaatc aaaaaatgcc tctttaatac aatgcattgt
      301 ctgaaagatg ttagaaggca catattgtaa atggattctt tttctgacta aagtaatttc
      361 taccaaaagc ctttccccac tgctatacaa gtacacagtg tggagagata aagagcactt
      421 tctcagcaca ttactacctg atccaaacac ttgggaaatc actaatgtac agcatgccat
      481 atttccatgt cacacatgac acatttgtct aaaattaccc aacagagttt gacattgcag
      541 ca
//
LOCUS       KCLJ01003621             513 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 403492cal ultra-conserved element locus
            uce-5918, sequence.
ACCESSION   KCLJ01003621
VERSION     KCLJ01003621.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 513)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 513)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..513
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="403492cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>513
                     /note="ultra-conserved element locus uce-5918"
BASE COUNT          181 a           97 c           88 g          147 t
ORIGIN      
        1 tgactggcat caagtagagc atggtcactt tgtaaaaacc cattctcagt gttgtaaatt
       61 atagggttat cctagaacaa gagagagcaa aagttttatt cagaacagat gtaagaaagc
      121 ccataaaatc agatgcatta ccctctatct tttctaagct acaaactaaa actagttttc
      181 atcaaattgc actgacccta ttaacttaat tttccatgaa gtgacctttt atgactaaca
      241 atggaaaagc aaaactgtgc aaatacccat gaagacagtg aaatgactta ttttaatgag
      301 aagactaaaa tatctttcct gcattagcat ctgcttattg tcactgctcc ttaacccttg
      361 gtactggcag tcaccacatg tctccttgcc aggagtagat gtgtgccagg aaagccttac
      421 tgctagcatc agaaagataa tttctggagt tcaaaagacg tgtgtcattt caaatagtaa
      481 aatagatatc aaaaaaggta ataggaaaac act
//
LOCUS       KCLJ01003622             775 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 403599cal ultra-conserved element locus
            uce-4068, sequence.
ACCESSION   KCLJ01003622
VERSION     KCLJ01003622.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 775)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 775)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..775
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="403599cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>775
                     /note="ultra-conserved element locus uce-4068"
BASE COUNT          223 a          146 c          160 g          246 t
ORIGIN      
        1 tctgtttagg atgcaaattg ataaagagta atgactgtat tctcatatct gagcattcag
       61 gctgtttgcc agaatctgcc agagtctact gttgcagaaa ttgttaattg tgctagtcct
      121 tttgaatata gatgttttcc tgaactcacc aacaatataa taagccagta aatctaagtt
      181 tgacctgctt gttattattg tgagccctgg gtatgtcaaa ggcttttcac cgagtcaggg
      241 ttattaatca aacctgacta ctttttattg attagacctc aaatggttgg gttatatgcc
      301 accctgttta tatattgcta tttaatttgc agccaccctt cgtgcactct atctaagtga
      361 caacgatttt gaaatgctgc cgccagatat tgggaagctc acaaagttgc agatagtaag
      421 taatttatct aaattcttgg aaaatcaatt cactttgcaa cacttgtagg aatggaatcc
      481 agtcaatttt tgcaggaata gaccactaca cctggaactg tttcttgttt accagaagac
      541 acttgtaaat aaattggaag aattgagcat tcaggagaaa gttggggaca gagggagcag
      601 agctctcttt ggggctgctt tatggtaact gaaaatcgtt ctgactgaat ttattttgct
      661 cttagctgag tcttagagac aatgacctgg tatcactgcc taaagaaatt ggtgagctca
      721 cccagcttaa ggaactgcat atccagggaa atcgtctcac tgtgctgccc ccaga
//
LOCUS       KCLJ01003623             406 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 403712cal ultra-conserved element locus
            uce-7832, sequence.
ACCESSION   KCLJ01003623
VERSION     KCLJ01003623.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 406)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 406)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..406
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="403712cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>406
                     /note="ultra-conserved element locus uce-7832"
BASE COUNT          109 a           88 c           83 g          126 t
ORIGIN      
        1 cagggaagtt tataaccagg cttttagagt gccctatatt aaaagatggt tgcacctcat
       61 aggtttgtcc aaaaattgct cctggaaaag aattaacaca tcacctggac tttgcatgtg
      121 aagctttaac tttttgataa acagcaaact catctcctgc tgtgccagct atttttaacc
      181 caccttgttt ttttattgct ttatacagca tatctgattc tctctaaagc acaaactaaa
      241 aaatctatcg ggctgtcatt tgctgcagag tgccatctat catcatgcag cttggcagct
      301 gtagtgctgg ggggccgggg caggaggcac gctcaaggac tttccttgtc acaattattt
      361 atggctcttg ctggggcaca taataggaca cataaaacct gtgttt
//
LOCUS       KCLJ01003624             754 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 403816cal ultra-conserved element locus
            uce-333, sequence.
ACCESSION   KCLJ01003624
VERSION     KCLJ01003624.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 754)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 754)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..754
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="403816cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>754
                     /note="ultra-conserved element locus uce-333"
BASE COUNT          222 a          134 c          137 g          261 t
ORIGIN      
        1 catcctagga ttctgtcctt cactggagtt ttaggtagag tttaataaaa gctaaacctt
       61 gtgaagtttt aaaaaaggaa aataagttga cttacttgga tgttgtggaa gcaaaattgc
      121 ctcttacttt tatttaggaa tgaaaagtta agctgtgcat tacaacagta tttctggagg
      181 agatccagca aattgatata taactctgca caagtctacc aattgctttt taattggtat
      241 tatagacctc actctgaagc taggatgttt tattctccta tgtgtgaata tgtgctatga
      301 agttcttcta attgatttgc tttgcccatt ccatttgatg tatcattttt cacaatattt
      361 cataatttgt gctcatttct aatgaacaga gtcgttagga caggcatgtc taagtacaac
      421 tgacagctaa cattaggtgc cagatgcagt ttataaagct atgtagaact gcagagaaca
      481 gtttaaataa attagcacct gtacattagt ctcacttgct ggtaatttat aagcgaatca
      541 gtagagatga catttaggta agtcattgat caagttaaca gctgcatacc cactgcccag
      601 ctgggatacc taattaatag agattgcagt cctgacctag tgcttttccc cgtttgagtc
      661 tgtaatcctt ttattttgtg atttaacttc taacttacag ttgtagtaaa cagcccacag
      721 ccattttcca ctgtcagttc tgtgatattc cact
//
LOCUS       KCLJ01003625             682 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 403927cal ultra-conserved element locus
            uce-4146, sequence.
ACCESSION   KCLJ01003625
VERSION     KCLJ01003625.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 682)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 682)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..682
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="403927cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>682
                     /note="ultra-conserved element locus uce-4146"
BASE COUNT          214 a          153 c          129 g          186 t
ORIGIN      
        1 aagtgtgcta atcttacatc aacaaccaat ttgcttcaaa aaataatgta ccctgtgttc
       61 cttcaaacct tcctgagttc agactttctc ttggtttctg tggcaaaagg tttgcatcac
      121 cctgtaactg tgacacttgg aaaggcatct gatagggaaa gaaaagcgct gatcagattg
      181 gaagtggcag agcgaggctg tcggtgatgg gaagaagttc cactcacgtg tcagctctgc
      241 tccatggaaa tgaaagctct ggcaaaaggc tctgaagcaa actctcaaaa accacaatgt
      301 ccatcatatt aaaaacagca ggagaggaga attaagaaag aaaagcattt ctaattctct
      361 ttcaaacatg ctgatgctgc caagcttttg tcataacaga gtgatcgcat tacacaaaca
      421 gccatcatac tctacagcca ttaataaata gttattgtcc ttatgggtac agcctcacat
      481 acccatctcc cctgggcttg ggtattctaa ataaagggcc caggcaaacc ttctcagaat
      541 tctgctctac agccatttgt gggtttgaga taaacatctg acatttggat cacaagtgca
      601 tctgcagcca attaaactac tactaaatta acagctaact ttctcctgtt ttgtttctgt
      661 aaagcctttc agaacaacca aa
//
LOCUS       KCLJ01003626             539 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 404037cal ultra-conserved element locus
            uce-2321, sequence.
ACCESSION   KCLJ01003626
VERSION     KCLJ01003626.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 539)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 539)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..539
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="404037cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>539
                     /note="ultra-conserved element locus uce-2321"
BASE COUNT          178 a          110 c          103 g          148 t
ORIGIN      
        1 ttgtggaatc ataatgctaa gaattaataa gtgaaaaaca cctaagtaag gaaaaatgtg
       61 catgcaacca gtgccatgtt tcaaagcaac tgtcctctgt agtgctgagg tacatatttc
      121 tatacctccc caacagacta gaaatagaaa agacaaagca tataataaag ccaagcacaa
      181 tgaaagagct ctgaagagag agctgaaaag tagctatcat gttggcagat aaattctaca
      241 cacaattatt cattcctagc ctcttgacat gtagattaat gagtttgata acccaggctt
      301 ctaagaagta gattcaactc tgtttcacta gctttctcct cctcttctaa ctgcaaacaa
      361 cactttggtc tacaaatcaa tacatttgca ctggtcatca acattttgca attgaagtcc
      421 tatgtcaaaa tatgatatct gctgtgggac agggctctgt actggccctg tcaggaattc
      481 acaggggctc atgtgatcac tggagggagg tgcttccgtg ccaagttcaa agtcatata
//
LOCUS       KCLJ01003627             722 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 404146cal ultra-conserved element locus
            uce-526, sequence.
ACCESSION   KCLJ01003627
VERSION     KCLJ01003627.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 722)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 722)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..722
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="404146cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>722
                     /note="ultra-conserved element locus uce-526"
BASE COUNT          234 a          120 c          150 g          218 t
ORIGIN      
        1 atcttgcagc aggctgtttg aatgtgatcg tgactccggt agttatggga atagtgtaaa
       61 ggcctctcca gtgcagcaca tgctgaacca aattaagcac aggttagcac gtgtgcttgt
      121 gtggtctcag attgaattgg tttctgtggt ttctgatgta taaaactgtt aatactctag
      181 actgttgcca aacataatat gaagaaccac ttattcaggc acctgatctt tagaatgcag
      241 catcgtttgt aacaatttta acgctaacta agtacacttt gatgagacag catttaataa
      301 aatgctcatt aatttcatca ttagcaaggg tatgctaaga agtaagccag tttcttatgt
      361 cacgcccaat tagcatccca tgctagtaat cccattagta ttgttgaatt cactaatgga
      421 aaaactaatg ggcatgctac cagggcacat taattgggca tgacacccgt tctggtttta
      481 attattaaac tacgataatg aaatgtgtgt gtttgtaaaa tattaaaatg ttgaaatagg
      541 agagaagaca ataaaaaata gtatatgaaa cattagtatg taaatagctt tgtattcttg
      601 tggggcaaag gctccaaacc ttgtcagtac caggatgttg gctgaatgga gctggaaaca
      661 tgctgtaaat attcacagga aataaaactg tgtatagatg tgcacatcac atgcacagta
      721 ac
//
LOCUS       KCLJ01003628             622 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 404361cal ultra-conserved element locus
            uce-3722, sequence.
ACCESSION   KCLJ01003628
VERSION     KCLJ01003628.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 622)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 622)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..622
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="404361cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>622
                     /note="ultra-conserved element locus uce-3722"
BASE COUNT          199 a          125 c           93 g          205 t
ORIGIN      
        1 ttttagataa taagcaacat ttattatatc tccttccaaa ataacaagcc acgtatagcc
       61 tgatgctgaa taggacggga ggacagacat ttttttatct tgccccctat aatagatttt
      121 tccttttgct caattctctc tgtgaataac aagagtggca gccattttct ctcagctcaa
      181 catcaaaacc cctttcatct gctgtctaaa tgcaaacaaa gcaaaccttc caccaggcct
      241 ttctttccag ataaattaaa actctcatgt cctggggcct aaatcaagcc tacaggcctt
      301 ccctagataa atcctttctc aacctgaaat cttcttgcta cacgtgctcc ttgtaagata
      361 attttgcagt agctaatcaa taatgcaaca gtaaattgca tttaaataaa cattagcggc
      421 cctcttaatg aataaaacct catttgcaat ttgtcaaagt cacaaatgct ggactctttt
      481 gatattcatt agaatattgg aaattggagc tttgacaggt tttatgtatg ttgcaattat
      541 gatttttgtg aataaaagaa gtgctttatt ttcacaagaa ttcttgaata aaaacagtga
      601 tatatgctat gaatgtgata ga
//
LOCUS       KCLJ01003629             684 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 404473cal ultra-conserved element locus
            uce-1814, sequence.
ACCESSION   KCLJ01003629
VERSION     KCLJ01003629.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 684)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 684)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..684
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="404473cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>684
                     /note="ultra-conserved element locus uce-1814"
BASE COUNT          213 a          151 c          139 g          181 t
ORIGIN      
        1 tgccggggtg cccggccgca ttcccagcct ccctgcaatg ctccatgaca acaaggtgag
       61 acggcagagg ttaccccaac agctgcttcc taagccagaa attccaggca ttgaaaacca
      121 tctgtctata cattcacgaa tgtatataag ggcaatctat caggctgcgg cactgcagct
      181 gccactccat caggcctgct tcctttctcc aggctgaaca ataagagcta gttcttcact
      241 ttgtgtcaca cagaatggct gatttgatta agtccccaac tctcattatg ctaggtaggg
      301 gtgtagaatt tcaatgataa tccataatgc atgaccagtt tgtcgccatg gtaacataaa
      361 ttcaaggtta ctagctcaga cgcataattg ggtgtgcatt gagtgctgaa gaagggctgt
      421 taaaattctt gtcatagaag agtagcatcc atcatacaaa ttgcaaagta ctcataatca
      481 gaaagaaaaa tccttggaga aaaatgttaa taaaataatg attacatcta atatagttgc
      541 caaagtggtt taagtatttt agctaataag aatggaaaag gcaactcatt agctgcagaa
      601 gacttcgttt gaacattccc caccccccaa tatttgcatt gtaagatgga cccaaagcag
      661 ttcagctctg aaactgactg atta
//
LOCUS       KCLJ01003630             388 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 404582cal ultra-conserved element locus
            uce-5611, sequence.
ACCESSION   KCLJ01003630
VERSION     KCLJ01003630.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 388)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 388)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..388
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="404582cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>388
                     /note="ultra-conserved element locus uce-5611"
BASE COUNT          119 a           67 c           62 g          140 t
ORIGIN      
        1 ttttgtgaac ttgtttaaaa gggtcaaaaa tgtgtttgag ctgtacaaga ttaaccttta
       61 ttcatttggg aaaatgcaga cttcaacagc attcctctgc agtggttgca cttgctaaaa
      121 gtttaaaaca gtaatttttt cccaagaaag gtcatcttga gctaaaatgt caaataaatt
      181 atttagatta ctgaattaga aaagtgagga tctgacaggc tgaatttttt atgcacatta
      241 gccacagtca gggtctctat atgctctttc tattaagtgc agcctctctt cccttattaa
      301 gaatctctca atttattcca atatattttc cttaagatgt atctttgcat gtaaatagct
      361 ggtccaattt gcttcttact catacaaa
//
LOCUS       KCLJ01003631             322 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 404680cal ultra-conserved element locus
            uce-4210, sequence.
ACCESSION   KCLJ01003631
VERSION     KCLJ01003631.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 322)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 322)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..322
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="404680cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>322
                     /note="ultra-conserved element locus uce-4210"
BASE COUNT           91 a           54 c           56 g          121 t
ORIGIN      
        1 agtctaattt tctttgatct tgttagttcc ttacaagtct ccccgagaca ttctgcagtc
       61 attatcacct ttttttttta acattggtgc atatatgctt gggatagagc tcatgtaatt
      121 atccaatcgt attgattgta tgtgattgtg ccctgcagag gtatatttaa caaaggatag
      181 cctaggtaat aaaggagacc atgaaatttg ttgagtcagg ttatgaacta tttctaaatt
      241 tatataggat cctagacatg tgaaattcca tctgctattt tcatgaatca gtgctaaaca
      301 aaatattcat tctctccttg tg
//
LOCUS       KCLJ01003632             622 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 404784cal ultra-conserved element locus
            uce-2055, sequence.
ACCESSION   KCLJ01003632
VERSION     KCLJ01003632.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 622)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 622)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..622
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="404784cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>622
                     /note="ultra-conserved element locus uce-2055"
BASE COUNT          213 a          109 c          130 g          170 t
ORIGIN      
        1 acctctaaaa tcccttgttg ttctcagtcc acccttttac aaaaaagagg atcaaatata
       61 accatttgtt tatcaattgc cagacttgtc cgtacaataa atgaaggggg agctataatt
      121 tagatgttaa tttgcgctgt gcgctcttta atgaattaaa caatgaaggc ttataataca
      181 tggaaataaa accaaatctt tgaaacacac aggcattggc tcacaagaca gctgtgcagt
      241 tgacaagtaa catgagcctt atgtgagaag aaggggaaat cgtaagattt gcatataatt
      301 attgagatca tgcaaatgtc agttatgagg aggggaaaaa aacacaggca tctcactgtt
      361 aaatcctgac agttggcatc accgaagaac tcaaatacac ttgagcactg gttggcagag
      421 ggtcattaaa acagaatttg cagagacatt agctccctca cttttctttg agtgacgttt
      481 tactattaat agtttgcaga ggctttgcag aaaacatatt aataagagaa actgtaatgg
      541 gggtatctac agcaagtgca aatgtataaa ggggtgccca agaagctagc ctctaattga
      601 tcagccagtg ctatcagtgt ga
//
LOCUS       KCLJ01003633             506 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 404891cal ultra-conserved element locus
            uce-5029, sequence.
ACCESSION   KCLJ01003633
VERSION     KCLJ01003633.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 506)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 506)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..506
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="404891cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>506
                     /note="ultra-conserved element locus uce-5029"
BASE COUNT          141 a           92 c           79 g          194 t
ORIGIN      
        1 tcttccttcc tattccctat tagcctgtgc tttggttctc tgtttttatg taaatttgct
       61 ttttctagtt aaaatattct tttaaatgtt gccgaagctc attatatctt tggaaagtag
      121 aagatataca aatgtgttga agaactaact ctgctcagat ttatcatacc tttgattgac
      181 tggggaaatg actttcagtt gacatctgag ccaacaagtt agctgaaata aaattttgtt
      241 taataccctt gcatcaataa tctaggcaca gcatcattga ttgagaaagt ctgatcaata
      301 gagtattact gactgcctaa ctgtaacttt gccagacttt tttgttaatt ctgctgatga
      361 ccttcgtacc accacttttc aggttcaccg cctttgaaat tcaatttgct ccatttgcta
      421 ttatttaagg aatttacaca ttcaattgat ttcattctac ctgatacaat gagtttagta
      481 tatataagat tgtgcattct tgggac
//
LOCUS       KCLJ01003634             568 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 405000cal ultra-conserved element locus
            uce-4457, sequence.
ACCESSION   KCLJ01003634
VERSION     KCLJ01003634.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 568)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 568)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..568
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="405000cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>568
                     /note="ultra-conserved element locus uce-4457"
BASE COUNT          168 a          100 c          105 g          195 t
ORIGIN      
        1 ctctagtata accttagctg tctggaaatg agctaattaa attttttggt gtgtctttta
       61 gagaatacat ttgcatttga cataattagt ggtaggcaga tccagctata tccaggggga
      121 atctcaagac aactgctttg ctgactatta gtgcttaatt tctgaatgtc aaatcccgca
      181 catcttaatt tccagagaat aagctcaatt gaacttgctc cccagttatg caaaaactgt
      241 tcagataaaa ccaagtggac acgaatgtaa tgaatgtggt tattaaattg tttcaattga
      301 aagaacccta ttcttatacc atcataatgg gaacaattta tccccactga tcagcctgtc
      361 tcttttttct gagctctctt tgatcttgaa gcatattgca gtggtgtgtc ctattgaaaa
      421 gcaaaactgg ggcaatttta atgcttttgt accttaccag tgctctattt tttcgttgtt
      481 taaaaatagc tgttaattat aagtgcagtt taaatgtctc aagtgaccca gaaatgcagg
      541 ttggaatgag acagattgta tgtctcat
//
LOCUS       KCLJ01003635             498 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 405110cal ultra-conserved element locus
            uce-3702, sequence.
ACCESSION   KCLJ01003635
VERSION     KCLJ01003635.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 498)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 498)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..498
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="405110cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>498
                     /note="ultra-conserved element locus uce-3702"
BASE COUNT          140 a           99 c           97 g          162 t
ORIGIN      
        1 aataaatata tcttaaaatc aaaaccattt tgcgttgctt aactgagtgc ataactagtc
       61 ctttgtacac atatttgtac aaagtgttgc ctgtaatttt aaagatgctt gcctcaggga
      121 ggtttcattt ttccattgaa gtccccttga tttactgtac gcaatatgtt acagcttcct
      181 tatttgctcc tttgggacag ttactgacag taaatctcta ttaaaatatt cttccatatg
      241 gttgcatgaa aattttattg cagtgagcct gaggctgaag gtcacagctg agtagctgca
      301 gttaagtatt gcagtctatg gactctgagg tacatctgtt ctgggagctg gagcaaaatg
      361 agaattttac tgtcaatagc agttctccaa aactggttcc atttgtttac cgacacaggc
      421 ccatagcaag gcagtaccca cacccacaca ttactggcca ttgtggctgc gtgatttaga
      481 tcaaaaatta cagagtct
//
LOCUS       KCLJ01003636             441 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 405221cal ultra-conserved element locus
            uce-7091, sequence.
ACCESSION   KCLJ01003636
VERSION     KCLJ01003636.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 441)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 441)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..441
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="405221cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>441
                     /note="ultra-conserved element locus uce-7091"
BASE COUNT          152 a           80 c           86 g          123 t
ORIGIN      
        1 tcagtttcaa tcagcagaga acacatgtgt atatctgata aacttgtcaa tgccttttta
       61 aaacaggatt ccccaatcta ttctattcaa tttttcacta tttcaagtag aatcttgata
      121 agacagagag cagctgtgta tagctagctc aggctacaac taatttgtgc agaaaaaatt
      181 aaatcaggag gtaaattatt tcatgattgc tcattcccaa cagagttggg catcattctg
      241 aagaaaatat caaataattg gtttcagacc atgtcagaca catgcaattc ccttctctaa
      301 tggctatatg aggtaggact aggcctcagg ggtcaccaaa gaactgaaaa tagcttagtg
      361 ccaggcacag caatagagag acagagcaca taggaaatga aagtgcaatc tataggggaa
      421 atgtgcttca cttggaattt a
//
LOCUS       KCLJ01003637             446 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 405329cal ultra-conserved element locus
            uce-406, sequence.
ACCESSION   KCLJ01003637
VERSION     KCLJ01003637.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 446)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 446)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..446
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="405329cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>446
                     /note="ultra-conserved element locus uce-406"
BASE COUNT          133 a          104 c           78 g          131 t
ORIGIN      
        1 tgtggcctgg aaatccagta agttttgaag aaaaggctcc attattctcc cattaaagcc
       61 tctgtcagtc tctccttctc tccctctctc ctaagacaga tcgttccctt aatcattctg
      121 gaaaagaacc ccaagctgat ataatattat aattaattaa ttcactaaaa aggtattaaa
      181 tttcttttcc cccctgtgga tattatctga attcattgac ctttagaaaa atcaccctct
      241 aattgtaacc aggttcaagt gcatttccag cctgtccctt ttacattaat aatatcttcc
      301 aggactccac tatgctgctt aaatattgta taaatttcac tgccccctcg agagaaaggc
      361 acgaaatgaa aactgggagc tgattaaagc tccagagctg ggagatggac aaacagagca
      421 gggccctgga ggggtgggaa ttccac
//
LOCUS       KCLJ01003638             556 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 405426cal ultra-conserved element locus
            uce-2256, sequence.
ACCESSION   KCLJ01003638
VERSION     KCLJ01003638.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 556)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 556)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..556
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="405426cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>556
                     /note="ultra-conserved element locus uce-2256"
BASE COUNT          173 a          118 c           99 g          166 t
ORIGIN      
        1 agtaaatgct ctgacacaca gaaccatggt gatttccaga caacgctatg acatctgctc
       61 catcatgtaa aaacccaact tcaattcatt tgaaagcctc atttgaagat cccattttag
      121 accctcttgc tgtagatttc acttccccag ctacttaaca tgcgcattgg accctccaac
      181 actgagcctt atagatttgt ctttgtcttt tgtgttaatt attagctgct gcagagctgt
      241 ctctgtgggt gaacgcacac agaaacaaag gcggtaaggt tgtaaaacct tttatctcta
      301 tcagggcaca ttatttgata aggtgctaag ctaatagcaa tgcatgtcaa attgtgttta
      361 gacagatcag tgtgctggga attggaggtt atatttgtct ctgcaaacca gcacctgcag
      421 aagcaaagag aaattcatac taatattcac tatgtaaacc ataaagcatt acaaatggct
      481 ctaagataac aaacctctaa tcactcatat tctcatataa taggaaactg gacttatatg
      541 gcctatcatt tggaag
//
LOCUS       KCLJ01003639             515 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 405537cal ultra-conserved element locus
            uce-7083, sequence.
ACCESSION   KCLJ01003639
VERSION     KCLJ01003639.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 515)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 515)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..515
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="405537cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>515
                     /note="ultra-conserved element locus uce-7083"
BASE COUNT          117 a          153 c          144 g          101 t
ORIGIN      
        1 tgctgaagac tcagagagag tgggtttcct cacagactgc tttttccaca gacaaggacg
       61 caggtcaaac aggtcccaca ctgccagcct cagacaccca cagagggtgt cgaggaggac
      121 gagcagagag gctctcagga gcacagagct gtagtacttg ccagtagcag gctgcatgcg
      181 agtccatttg actgtgcaac ccttgtgctg ctttgtcctc tgctgtcgtc ctcaccaacg
      241 actttcggaa agcactaatg aacaagtgca atttcttttc tctattgttg ggttttttgt
      301 aaagttgctc aaatgctctc aggtatggcg gccctgaacg gaggactcgg cgccacaggc
      361 ctgacgaacg gcacggccgg caccatggac gcgctcaccc aggcctactc aggaatccag
      421 cagtacgcgg ccgccgcgct gcccaccctc tacagccaga gcctgctgca gcagcagagc
      481 gccgcgggca gccagaagga aggtaattcg gcccg
//
LOCUS       KCLJ01003640             382 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 405644cal ultra-conserved element locus
            uce-1069, sequence.
ACCESSION   KCLJ01003640
VERSION     KCLJ01003640.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 382)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 382)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..382
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="405644cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>382
                     /note="ultra-conserved element locus uce-1069"
BASE COUNT          126 a           69 c           71 g          116 t
ORIGIN      
        1 ttgcttgggc catgcacagt agcttgtgtt gatgtataat gaagcaccac tagacagaac
       61 agtcacttgt ggcaggtagc taagaaattt caataaagta aactctcagt attatcaaaa
      121 ttatacattt ggggctgtta gcatggccta gaaaaagatg aggacaggct catctcatta
      181 aatgagaaga aatagtggaa ttagcttgaa tctaattaca agccacacta tctaatgtaa
      241 aaacatgact gttttttcac tcccattcat tttggctagt aattagtttt ggcctctaaa
      301 atgccaccct ttaatcatcc aaacacagat gtgatttgcc gtgcaattta atcttgcttt
      361 aatgaagaac taatggacgc at
//
LOCUS       KCLJ01003641             430 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 405741cal ultra-conserved element locus
            uce-7350, sequence.
ACCESSION   KCLJ01003641
VERSION     KCLJ01003641.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 430)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 430)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..430
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="405741cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>430
                     /note="ultra-conserved element locus uce-7350"
BASE COUNT          142 a           82 c           75 g          131 t
ORIGIN      
        1 gcagtaatgt ctggaaacca ccagctgcta agtgtgtctg aaactatggg ggctgactta
       61 tgaacattaa actgaaacct gatattttta aagctttcaa ggcaatccat tttaaaagca
      121 cccaggtcag aactttatac ataagaaatg ttcatacctg gttcatttat gtccgataat
      181 aaaacaaaat cctctttaaa agtcttcagt acctagtaac agccccatga agaataagag
      241 ggctggcagg ggaagttgtc agaaaattta atttcctttc attagctagt ctgctccaca
      301 aatcggtgct tgttaagttc aaagcagtcc tgaaagcaac atcagtttta agtcttttta
      361 ctccagtcac atctgttaat gagatttttc caaataacaa ttgtttttag ctcaagagat
      421 aaatctagca
//
LOCUS       KCLJ01003642             556 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 405952cal ultra-conserved element locus
            uce-3767, sequence.
ACCESSION   KCLJ01003642
VERSION     KCLJ01003642.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 556)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 556)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..556
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="405952cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>556
                     /note="ultra-conserved element locus uce-3767"
BASE COUNT          161 a          126 c          124 g          145 t
ORIGIN      
        1 aagaattata tttatggttt caagtatttc agaagcactg gcaagggtag gagtgttggc
       61 attttaaaat gctcatttca tttataaaat ggacaggaat gcacaaggtt tttccaaagg
      121 ccatacagaa catgttgcaa attcttgcag catgaggctg tgactgtacc accagctctt
      181 agattggaca gatcatggat caaacatcaa ttaatttaac catttccact tcattgtttg
      241 cacattactg aaacaagacc tcttcaatat ccaccggttt gctgaagatg ttaaagcgtt
      301 tgtctgtggc cagcctcttg gtgacatccc tgagaaacag gcgcagctcc cgcaaggtgt
      361 tctcctcctg gtcctccatc cgctgcttct ccgcctccga cagctcccgg gcaggacacg
      421 gtagggcgag aggaagaact tccagggcac gaagagctag ggaaatgaac aagaaatcag
      481 acaatggaaa ggtcaacagt agagttgatg ccactccaaa tttcattttc aatatgcacc
      541 gtgggtcaac aactgt
//
LOCUS       KCLJ01003643             597 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 406060cal ultra-conserved element locus
            uce-1264, sequence.
ACCESSION   KCLJ01003643
VERSION     KCLJ01003643.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 597)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 597)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..597
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="406060cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>597
                     /note="ultra-conserved element locus uce-1264"
BASE COUNT          189 a          111 c           97 g          200 t
ORIGIN      
        1 gcaggtcgtc agattttcag atttgaactt gagatcttta attaggaaat ctattggaca
       61 atttttaaac aattaaagtt tccttcacaa acaagctgct gctgctcttt ctgagattcc
      121 tgttaaaaag tagtaatgtt ctatccacac attaatgatt ccaaaattct ccattatgaa
      181 caatatttat caaaaacagc ccactatcag atgaaagatg tgccttatct tttcttgtca
      241 actaaagcat tattcactga aagtttcttt catatctgtt tcaggggttt cagtgtcatt
      301 ttaaattgca aatcaatcat agatcatgca agccctactt ctgtaggaga gattaacgct
      361 ctggctaaaa ttgtttacaa agccatttgt aaaccttctg ctgatgcaga tgaggcaagt
      421 ttaccagttt aacattgttg atcccagaga aagccttaag caatgacttc agagggcaaa
      481 aaaatttgtt catttatcat tattgtcatg ggctttcgca aatgataaca atttgtcttc
      541 atcctatttt tagacaatga gccacaatag agtccagaaa gccattttgc cagatgg
//
LOCUS       KCLJ01003644             785 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 406170cal ultra-conserved element locus
            uce-5459, sequence.
ACCESSION   KCLJ01003644
VERSION     KCLJ01003644.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 785)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 785)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..785
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="406170cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>785
                     /note="ultra-conserved element locus uce-5459"
BASE COUNT          238 a          136 c          145 g          266 t
ORIGIN      
        1 tggccagctc tgtcaactgc tggtcctggg ttttaatttc ctgaagtgtc tcatttctcc
       61 aaagggagct gaaaaaaatt cctctttcct cccctcttca cagttgctct ttgagtaagg
      121 ccatacctaa caattattca ggaaaacatt atgttgacat tactgtttag aaaataaaaa
      181 agggttttta aagctagaga gtaacatcgt gaccatatag cactagtgaa tgattaaaaa
      241 tttagatgac tgcctttgaa acaataaaaa gctttcgaag cttcttaatg agcagctatc
      301 agaaataaag catttaaaac ttcagaaagt gcctctgtgg aaatttcatt gtctttgatg
      361 ctgtaaaata actgcagggt ggattcattt caagttcttt ttagcatact ggtcgtttag
      421 aaatattggg agatatcttt cttagcaata tgtggggaaa acaatgtctt ggtcgctttc
      481 atttatctgc aatttgacag gagtgcagtt tattaacttg aaaagagaca gatacattat
      541 ctgaaacaca gagagtatag tgggtattgc ctccttttta taccagtggg agtccatgac
      601 actttgaact tgctcaccat taaacgcctt cctgagttgt tgaagaggcc tttaaaaagg
      661 gagcctgtgc atttatgatg taaattcgtt attttgacag tctttgaaat ctgtcatatt
      721 cacgtccaat ttaatgcacc gcaaattctt ttcttttaaa atacttttct tttaagattt
      781 caaag
//
LOCUS       KCLJ01003645             575 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 406284cal ultra-conserved element locus
            uce-2461, sequence.
ACCESSION   KCLJ01003645
VERSION     KCLJ01003645.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 575)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 575)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..575
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="406284cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>575
                     /note="ultra-conserved element locus uce-2461"
BASE COUNT          182 a           86 c          108 g          199 t
ORIGIN      
        1 cccctcagtt cagtgggatc agatggtaat aaattcacat aattacatac ttgttaagga
       61 ggttaaggtt attttgtttg gataacgtga ctataattta ttttgtctgt aaggtttgag
      121 tttaaacaat attaatggtt agttaatggc ctaatgagtc agctacaagc catttaggca
      181 tgcaatgaac ctttgatttt cagtgactcc tctaatgaaa gatctatatg agtgcctgtc
      241 tactgtcaca atagagatag caagagagtc atctaatcga ttctgatggt aaatcaattg
      301 atctgtaacc ctgttttcat acagtgaaaa agatatggag gaaacatttt actgttccct
      361 tatttccagc tgaatatcta taaataaaag agacagttcc ttatttgaaa atattccctt
      421 cataactgtg attcaaaagc agggagaatc tgattgatgt cctattttat agatgtgtct
      481 gttacttttg tcatttcagg agatttaaag ttcttagaaa ttaaatatat gatgcagaac
      541 atcagagagg cttgcacttc actgtcatgt gtaag
//
LOCUS       KCLJ01003646             839 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 406393cal ultra-conserved element locus
            uce-6355, sequence.
ACCESSION   KCLJ01003646
VERSION     KCLJ01003646.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 839)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 839)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..839
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="406393cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>839
                     /note="ultra-conserved element locus uce-6355"
BASE COUNT          259 a          150 c          141 g          289 t
ORIGIN      
        1 ttatcttcca ttctgcattt actattttta tctttattaa tagctactgc tcagtggcct
       61 taaagaattt ctccattcaa cagaaacttt tctttccaga gactaatgct aattagtacc
      121 ttgtttgtgg cttcagtgtg atttatgagc tactctgagc cctgaataac aaaatatcag
      181 gctatctcca taactgtcta ttaatttgtt tatctttcta tctgtctacc tatctgcaga
      241 aatttaaaac agtgcaataa ctttcagatc agtgacatta atgcagcatt agattaaaag
      301 aatgttactt tatacaggca taaatgtaat ttagaggcac ttagaggagg ctatatactt
      361 aacatgattc ttggccagtg aagacaggtt gatcccactc attttgggat tgctaatttg
      421 cagttaatta ggaagattga ttctgttctc tgaggcccaa ccctaaatgc atttttccgg
      481 tttccgtggc accgtgctag ttatcattgt caaggtgcac gtacaactga atgacatggt
      541 ccttcataaa acataatact ttgggagttt gggaaagtaa atctagtaac cttcagcaaa
      601 cactggttta ctctgtagac caaaatctag tgtcatctgc atttaaaaca actttcaaat
      661 cacattactt tgagaaggtt tattgcaatt agcaaataga gacttgcttt aatgctcaac
      721 taaaataaca tagcttcata gtttgaagga aataaaatat tgacattttg cttgaaggaa
      781 cttgtatcct taaataaatg cagtgggcat ggcatactta agcttgtacc ttttataga
//
LOCUS       KCLJ01003647             770 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 406504cal ultra-conserved element locus
            uce-2376, sequence.
ACCESSION   KCLJ01003647
VERSION     KCLJ01003647.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 770)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 770)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..770
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="406504cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>770
                     /note="ultra-conserved element locus uce-2376"
BASE COUNT          230 a          156 c          130 g          254 t
ORIGIN      
        1 tgtgtgagaa agtgcaataa gcctgcattg atctatggac cttattcttt ggggaaatat
       61 gagtcacaga tgcatagttt ggagacactc ttaaaaatat tatctctcaa gtgttgtgtg
      121 aagctttaca gacttcttcc tgcaaatctt ctatgtcact gttagaaccg agtccaaaat
      181 atttacatct aaacaactta tggcatctgt caatattggt ctgctccaaa acatttctaa
      241 gtgcaacttt taaactgcat aaacaggagt gaactagtag cagtctaaag ttgtcatcat
      301 tgacatttat gatttatctt aactctccct agccatttgg ctaaagtttt aagtaaacac
      361 tttcagtctt cctcatgttc tctttactgc cacctcccac taataagaga tgttgccaag
      421 aaaagcagcc agacagttca tttacctccc aaacttgcct gaaagtagct tgcctggttt
      481 agacaagggt cgaaactact actgcacatt ttcaacagat ggaacaatgc ttcacaaatt
      541 atttacattg aagttatttg ctttcaggat gtgtgtttaa cgaatggtta gttgaatgaa
      601 atattgcagc tcagacagag aatgcaagca attcaagcaa gccatttatg gtgatagatg
      661 tagctgtgat ccttaatttt ctacaaagca ttgcagcatt ttgtcctcat tcttcaataa
      721 ctccttgaat ctgacaaaag tatggtttct attttcaccc tcttcctcct
//
LOCUS       KCLJ01003648             641 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 406718cal ultra-conserved element locus
            uce-3054, sequence.
ACCESSION   KCLJ01003648
VERSION     KCLJ01003648.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 641)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 641)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..641
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="406718cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>641
                     /note="ultra-conserved element locus uce-3054"
BASE COUNT          195 a          133 c          121 g          192 t
ORIGIN      
        1 cacaatacaa aaccctgcat atatatctga tgtattttat acatattcat cctcataact
       61 tgacagatgg gaggaatctt gcagtcattt ctgaaagcag acaaaaggcc gttggttctg
      121 ctccacatga tgatttgtga agacagaata tcacccgctt ccgttgatga ttatatagtt
      181 ctatccatct gtctgccact ggaggttgtg agagtgagat acagctcaca ccgtcttcat
      241 aaacaaaagt agactgtgct gtcagtagtc agacacgcca actaattgga gctgtcgaca
      301 gacacaatat tctgtgtcaa cagctctggt aacagtttga aacagcaatg atatgttggg
      361 tgatggtgag gatgacacat atgtctctaa tagcatgcta gaaatctgac ataactagaa
      421 aagaattact aaaatgtaat tcccagcctc tagttctgct gttcagactt cccagtcagc
      481 acagagagga aagagatgtg ttcatgttct tgtgctcgta cttgtacaca tcttcttctg
      541 tatcacttca tatgctgaca gcttaatttg atgctcataa tgcctaacac taagctttct
      601 gctgaatttc aaggaattca tcaaaattcc tacacaaatt t
//
LOCUS       KCLJ01003649             702 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 406829cal ultra-conserved element locus
            uce-4870, sequence.
ACCESSION   KCLJ01003649
VERSION     KCLJ01003649.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 702)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 702)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..702
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="406829cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>702
                     /note="ultra-conserved element locus uce-4870"
BASE COUNT          212 a          125 c          136 g          229 t
ORIGIN      
        1 aagtatgtct gcagcagagt attgagacct ttctaatttc tttcaaaatg tgtttgaaac
       61 ttggtatctg ccataatcaa aaggataaat tttgccgaca ttatgaatat atccatttgg
      121 gaagtcaaaa caagtatgat ttagatctgg cttttgtcat agataaatag ttctttttgt
      181 agtgagcctg gagcacttaa agcaacccag caaagtccaa tgaagtgcca actcaagcca
      241 agaacattat tatttattgt cagttaggac cttcatcact tacagacatc actggaaata
      301 ttactggtga ttgatactga tggcaatgat gattactctt gcaataagct taattaaaat
      361 aatgaagtac tgttgcacag aacttggttg ttgcccaggc aggataatgt ataagcagca
      421 caaggaagtc atcagctcag agtgcttcat atttcaagtg tgacattgct agggaagcaa
      481 aaaggcattg tgtgccattt ctccactatt tctgctccat ctcctatgtg tatgcataca
      541 caaataattg ctggaataca caccgcagag attgcctttc agatattaat cctgactctc
      601 ttccttaatg aagtgtagat tggtcatagt ggtggtattg ctgtttttat aacatgctgc
      661 aagcctctga gaatgatttt ctttattctt cagggagctt tt
//
LOCUS       KCLJ01003650             555 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 406941cal ultra-conserved element locus
            uce-5205, sequence.
ACCESSION   KCLJ01003650
VERSION     KCLJ01003650.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 555)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 555)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..555
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="406941cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>555
                     /note="ultra-conserved element locus uce-5205"
BASE COUNT          131 a          142 c          130 g          152 t
ORIGIN      
        1 catttctctt tccgctcttt cctcggcata atctttctta ccagcagctg ttcacaatgc
       61 tgaagcttat atctgtactt ttcctttcat gcttgcaggc atggatctct tctccaactg
      121 cacagaggaa tgtaaagcac tgggccactc ggatcggtgc tggatgcctt cctttgttcc
      181 atccgatgga cgccaagctg cggattaccg cagcaatctg cacgtacctg gcatggactc
      241 cgttccagac actgaagtgt ttgaaacacc agaagcccag cccggggcag aaaggtcctt
      301 ctccaccttt ggcaaagaga aggcccttca caacagtctg gagaggaagg agttcgatgg
      361 actgctgtct aatacacgag cgccttacaa accaccatat ttgagtaagt actgcttagt
      421 tccctttgca ggattttcat gctagatggc ttctcttgga ttcaggcacc agtgaagaag
      481 gcgttgttca gtgccaaaat cttgctaggt gtgacatcat tgtcagcaac aaaagtgtca
      541 gctaggggag ttgtt
//
LOCUS       KCLJ01003651             281 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 407048cal ultra-conserved element locus
            uce-7917, sequence.
ACCESSION   KCLJ01003651
VERSION     KCLJ01003651.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 281)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 281)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..281
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="407048cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>281
                     /note="ultra-conserved element locus uce-7917"
BASE COUNT           55 a           63 c           89 g           74 t
ORIGIN      
        1 gggggcggcg gcgggcgcgg ccgcggagag ctgccagtca gcggctgatt tattattcat
       61 ttgtgttata ggtggggtgt gcagacagtt actgtaataa ttacccggac tggagcgttt
      121 ccttggcaac cctccattca tgctgttgcg gagagtacgc ctgtaaagca tgacattgct
      181 gtattcgggg gtttgttgcc ctcccgctgc tccgggtttg aggttagtta cagcatcaca
      241 aggtgctctc gagcataaaa agctcaggct gggattaaag c
//
LOCUS       KCLJ01003652             384 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 407145cal ultra-conserved element locus
            uce-6786, sequence.
ACCESSION   KCLJ01003652
VERSION     KCLJ01003652.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 384)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 384)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..384
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="407145cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>384
                     /note="ultra-conserved element locus uce-6786"
BASE COUNT          105 a           87 c           81 g          111 t
ORIGIN      
        1 gcacataaaa acaaaagaaa gcgatgcctt tgatcctatg ggtttccttc ccaccaagct
       61 gtaggaaaat tacctgtgat gtgaagtcat gctgttgtag ctgtctccct tctctcaagt
      121 cccaggatct gacagtgtta tccaaacctc ctgtccagag cttggtacca tcattagaaa
      181 tgtcaataca gctggctcca tctgtgtggc cctggaattg cctgataaaa caaaccagat
      241 tgaataatga tttcctgcca gagctcaagg taaacactgt tgtggtgtta gttttggact
      301 ctcatctgtt ctgtgtctga cgatgagcaa gaatccaggt gctagatcag catcatggct
      361 agctgaataa agtatttcct atca
//
LOCUS       KCLJ01003653             623 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 407256cal ultra-conserved element locus
            uce-6454, sequence.
ACCESSION   KCLJ01003653
VERSION     KCLJ01003653.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 623)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 623)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..623
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="407256cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>623
                     /note="ultra-conserved element locus uce-6454"
BASE COUNT          153 a          143 c          144 g          183 t
ORIGIN      
        1 tctttcctta cagggagaaa aggtaagttc tccttagtat ttggtttgca gcctatggct
       61 agttcttatc ccctcccctc ctgtttgatt ttctgttctg atatttgatc aactaacata
      121 cctaaacagg gaacatcagt tctacgtgcc attgttaaaa ggccttgcaa tggaagactc
      181 acaaagtaca ttggtgcaac agagtcacta agggtttcct ccctcttctt tctcttgtct
      241 cacaggtttg cccagcttgc ccctgcggtg agtaacgcca gcagcctctg ctcgctttga
      301 gacatttaga gtctgaatcg ttcttttaat ttaaggtacc ccagagttca tggcccccga
      361 gatgtatgag gagaaatatg atgagtccgt tgatgtttat gcttttggga tgtgcatgct
      421 agagatggcc acgtctgaat atccttattc cgagtgccaa aatgccgcgc agatctaccg
      481 gcgagtgacc agtgtaagcc tcactgctga gcctaaagct gctgctgtta gcagcaaagg
      541 aacaccagtg cgtctgacaa gagttacagg gtggttgaac tcattgaacg tctgtcagaa
      601 gcttgtaaaa tacgtgaatg gaa
//
LOCUS       KCLJ01003654             778 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 407472cal ultra-conserved element locus
            uce-11, sequence.
ACCESSION   KCLJ01003654
VERSION     KCLJ01003654.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 778)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 778)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..778
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="407472cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>778
                     /note="ultra-conserved element locus uce-11"
BASE COUNT          218 a          158 c          144 g          258 t
ORIGIN      
        1 aataaactgt atttgagaat gcatgtgctc tcttctgtgg acacagatac acttttcttt
       61 gtcacttttc tgtcaaacag tattttgaaa tttaatgaga ggctaaagga tgttattaat
      121 tgcttttcac ttatccatta ggctgcaatt tcatctttta ctagaagata ttcaaaaagt
      181 tgtagccacc ctgattcaca aggggatttc ccatgtgcct caggaaggga caaacaaaca
      241 actgaattca ctaaatatca ctccatgcaa ctttctctcg ccactagtta gccttaatat
      301 acttagaagg ttgctcttct aatttgaact gtgtgagact ttggctggag gcaacttctg
      361 tgtcccagtg ataaaaggag acataaaaca acccagtgcc tgatcatgct ccctggctgt
      421 cagtgaatca tgtttaatag catctccatt gcagttttgg ccaatttgct tgcaatggca
      481 tccttttcca tgggcttgct gctcagcagg ccctgaagca atctatgaat aacttcccaa
      541 cagatgctgt ttatgaattg aagcaaatgg cttccctgtt tctctttttt ctcacttcaa
      601 taattttcag ttacattaca atgaatattt atagtcctat agcagtgcat aaaaatggga
      661 acaagcagac ctgtgcattg tttcatacgt gagtgctgtt ctaatggctt ctgcctcaat
      721 ggttttaatg ttctgctgat ggactgaaaa gagaatgcaa attgtagatc agtcactt
//
LOCUS       KCLJ01003655             736 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 407583cal ultra-conserved element locus
            uce-2357, sequence.
ACCESSION   KCLJ01003655
VERSION     KCLJ01003655.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 736)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 736)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..736
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="407583cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>736
                     /note="ultra-conserved element locus uce-2357"
BASE COUNT          216 a          154 c          149 g          217 t
ORIGIN      
        1 tagtcaatga aaggtctttt cacccaaagg tgccatagtt caggaggcat ctcccttcca
       61 ccctatccca ttccagctac caagctcttt tctttcatga gtataatgat tatcaactta
      121 tttttcagct aaggaggggg aatttaaact gcctgcctga caatgctttc aaatggtgat
      181 gaaatgtctt cttcgtatct gaagagaaca tgattattag cactgaatct gacagacacg
      241 atttctgaat atttttgtgg cattaattta aatcaatgta atgtttgaaa acatttcagc
      301 ccctcaaaca gctgatgcag cttagattca attataacaa attgcaacac actgtcaagt
      361 ctttttacca agtcattagt cagggatttt gaatgcacgg cctccgaacg gagttcgact
      421 ggctgacagc tctaattgtt gggaaccgct aaaggattgc taatgagctg ggggatctgt
      481 tgggcctgta gctttcttca aggatgaaat ttttgaaaac tttcacaaga tcaaagcggc
      541 ataacatgga ccatttgcta aattgtcagc agtggagtga agcagtctga gtctcagctt
      601 taaagctcaa gcttcagtag aaaacaccat gtgcctcctg cccctgagct tttttcatgt
      661 gtcagtaaaa ccatagtgag aaacaatgac ttgaagaaag agccccagag ccaccatggc
      721 tgctatggct taatta
//
LOCUS       KCLJ01003656             511 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 407773cal ultra-conserved element locus
            uce-4888, sequence.
ACCESSION   KCLJ01003656
VERSION     KCLJ01003656.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 511)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 511)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..511
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="407773cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>511
                     /note="ultra-conserved element locus uce-4888"
BASE COUNT          152 a           93 c           89 g          177 t
ORIGIN      
        1 tcctattaac agcactatga ataataatca gtttactttc tggcttgtat ctaaatatac
       61 tttctatatg atttcatctt ttattcagct gtttaaaagc agaacatcta attacagttc
      121 atattagtct acattaattt ccacagagca tgtgtgatga ctgattttct aaaaacagac
      181 agaatttttt agcatatgga aaaatcatgt tattattaat acattcccac atgactctac
      241 atttcaattc ccttaattat ttagtcattg ctgattatgt cttttcacaa ttcattatcc
      301 catttcctgc aacgtgggca ttttattcat taagtgtcaa aactaagggc ctgacctcca
      361 ggaagataat caggaaataa gtggcagaca taaaaggtct gggtttccct taagtgctca
      421 cttatttcgg taactgtgcc atgtttttag taagcggtga cagaagcgaa gcgttgttgg
      481 taattgcaga agggcgcggg gctgccaggc t
//
LOCUS       KCLJ01003657             469 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 407874cal ultra-conserved element locus
            uce-5840, sequence.
ACCESSION   KCLJ01003657
VERSION     KCLJ01003657.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 469)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 469)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..469
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="407874cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>469
                     /note="ultra-conserved element locus uce-5840"
BASE COUNT          147 a           90 c           84 g          148 t
ORIGIN      
        1 gcctgcactt catgtcctta agcaggtact acagtcttat gtaaatcagt aagattgatg
       61 ctgttgtatt ggtcagcatg taaaataacc tgtcatcagt acagaacgtg atgtgcagaa
      121 taccagtgta acttgaaatt catagcattt taacacctgt ttccatagct acagtgtaat
      181 ctagacatct gagaagccag cctgcctttg ccagttctgt catttcaagg gaaataaatt
      241 aaggaagctg atcacaagcc tggattatac agcttcttta aagtatagca accagacctg
      301 aaaactaacc aggaatgaac atcattggga cagaatggat taacctttgt aggaaaactt
      361 gaatctcctc catattaact tctctcaagc tatattttat gttatacctg gcagttatat
      421 ttgcaggacc atatttcttg atttttgaga agttgtacca tattcttaa
//
LOCUS       KCLJ01003658             606 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 407981cal ultra-conserved element locus
            uce-4704, sequence.
ACCESSION   KCLJ01003658
VERSION     KCLJ01003658.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 606)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 606)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..606
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="407981cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>606
                     /note="ultra-conserved element locus uce-4704"
BASE COUNT          170 a          128 c          123 g          185 t
ORIGIN      
        1 tccagtaata gttcatattt catggggact tggttttcat gaaatcatct tggtgtcatc
       61 tttcatccat aatacaatat cagttcatta aaattcaatg cagcactgaa cttggtcaga
      121 ccgaaatggg gctgacaaac ctcatgtctg atgatgaagg tgaaactagt tttcagtatc
      181 tgtactgttc acttgattga ttccatctta ggcttaatgt ttcctgcatg gcctgccact
      241 gtcatgcaaa catgacctga taacacattg tcaggactac tccagagagc ttacagcaat
      301 ctaaaaggag tgtgaagttc catctgaaat gtgcatattt gataagcatc tttcattttc
      361 agaaagttaa tcttctgtgc tccactgaat cttgaaaacg atctggctca aatgcatcag
      421 gtagcccaat atcactgaga cccggggaac agacaggttt cctttcccat ccccggacag
      481 ctgcaagaat gggaatatgt tgtgctgctc agtccctttc aaggagatgc actttcaggt
      541 atcagggtaa aaatcctttt gaattcagac tgtctggtcc ttagggttag ctcaggtaca
      601 gaatat
//
LOCUS       KCLJ01003659             638 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 408086cal ultra-conserved element locus
            uce-2762, sequence.
ACCESSION   KCLJ01003659
VERSION     KCLJ01003659.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 638)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 638)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..638
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="408086cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>638
                     /note="ultra-conserved element locus uce-2762"
BASE COUNT          206 a          118 c          115 g          199 t
ORIGIN      
        1 gggtcccgct ggcctctgtg tttaaaggaa cattattcct ttttaaatac aaggcaccca
       61 gtttcttcag tagaaaaaga tcttgccacc ccatttcaga tgcaaagtta ctgcaagcac
      121 tgtagcagga gccctgctca ggatttttag tgtatagttt atggatttaa tttctttttg
      181 gaaataaaag ataacttcca aagaaatgac atgagtgtgt aatctccttt tgcagtgatt
      241 tttctttgat tgatgtgcca ttaatacttt aattggtaac aggtgcagct gattgttggt
      301 tcctaagctg aaaaatctga aattgaacat aaggctctga taaattaata aactcctctt
      361 ctccaaacag ttgttgctat gaaggaacta actttccatg aagcgccgct ccatcaagca
      421 cactgaatac tttatgttaa aaagcaaaat gttacttaat gataaattaa aattacacta
      481 acaggcaaag ataaaacata ataatgacac ccccttaagg aaaagaaatc actggaaagc
      541 actgagaaag ttatcttgtg aaatgtgttg tttctgttgg cgcatcaggg tggccatttg
      601 gattccctat cacattatta aagacatctc catccatg
//
LOCUS       KCLJ01003660             559 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 408196cal ultra-conserved element locus
            uce-7557, sequence.
ACCESSION   KCLJ01003660
VERSION     KCLJ01003660.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 559)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 559)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..559
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="408196cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>559
                     /note="ultra-conserved element locus uce-7557"
BASE COUNT          176 a          100 c           85 g          198 t
ORIGIN      
        1 gtttctactt tattgtttcc ttttacggta gtctgtttat ttatatgagg tcttttcttc
       61 ttaaccatat tatattgaaa tgccaactag gactagggag ctttccatat tcttttgaaa
      121 tttagaaata gcatggctct tacatgatac tttcataatg ttgccaatcc tctgataagt
      181 tgttcacatc agatatttag ccccaatacc tactgcttga gaatctgcac tgattctctt
      241 cacgttttgc ctctgcattt caagatttat gaatattaag ttgtgcttgc cccaaagcaa
      301 aagtatactc actaagatat ttgctgagat caggagtctc ttttttaaaa caaaggcatt
      361 aataaggaag cactataaaa tgtacgacat tgaaaaataa ggaaaattca gtatttttaa
      421 taaagtgaga atcctctagt tcaaagcacc ctatctgagc taccctaaat gatgcaaaag
      481 agtaacaatt tatgggatta tttctgctaa gtgtgaatct accctgattt ctaaaactgt
      541 gaccattatt ttcaaaaac
//
LOCUS       KCLJ01003661             728 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 408304cal ultra-conserved element locus
            uce-7595, sequence.
ACCESSION   KCLJ01003661
VERSION     KCLJ01003661.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 728)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 728)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..728
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="408304cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>728
                     /note="ultra-conserved element locus uce-7595"
BASE COUNT          218 a          148 c          146 g          216 t
ORIGIN      
        1 ctaagaatgc ccctgaagta acccacgctt cattgtgccc atctttagat atgaaaacct
       61 tctgtatcgt ccaccctttt ttgagtgttg cagtccacaa gtagctcagg aaaagaggca
      121 ttgttgatcc aattagataa taggagtact ttggttctca ttattctgat gagagggtac
      181 acatttgctc tttgagcttc ttgatggtaa acggtgctaa tgaggcctga tggattccct
      241 gctcctaaca aggctctcag cagtgcgagt gattacaatg gagatagatt tgatgggatg
      301 cgctcccttt tgtagtgtct cagctgctga cactctgcga cataatcagg tcacagagcc
      361 ggtcacagcc atcagcaaaa gccatagctc tattcctcat tattaaagtg cattattcag
      421 ttccaggcct tcacaatact gccaagggcc gttaagcatc agttctcaaa tataagagtt
      481 aataaaatca tcagctaaag aactagtaaa ttaaagaaat ggaaataaag tgctcccttt
      541 caaattcatt gaaggatcac aattaaataa gcagggaatt tctcatcacc acacactgta
      601 ctaatatgtc atgtgcaata acaaaaaaaa taacgctgtg ctcattgtgg actggcttgg
      661 aaagtgctga agtatctttt atggtaaagg aaatttctgt cttcgcaact tgtaggtact
      721 gttatttt
//
LOCUS       KCLJ01003662             388 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 408412cal ultra-conserved element locus
            uce-2464, sequence.
ACCESSION   KCLJ01003662
VERSION     KCLJ01003662.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 388)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 388)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..388
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="408412cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>388
                     /note="ultra-conserved element locus uce-2464"
BASE COUNT          131 a           73 c           71 g          113 t
ORIGIN      
        1 aatgaaggaa aaggaagtgg gtagaaaaga aaatcccaaa gatcctcgga taataagcac
       61 cattaaggtt agtctgtctc atgattgttt cttattaaaa agagactgta ctttatctgt
      121 gcaggatatg ctgtttggat gagggaatta gcagagtgac tgcctccata tcatctaatt
      181 agcaaaaatg ttgataagca gatacaatca catatgatta ggatcctttt aaaaagccac
      241 tccattaatt aaatagacag aaaggctgcc tccagccctc gcgtgccact gattagaata
      301 caaatattta cactaatctc acctccatca gccatgggac acttttgagt atttttagtg
      361 acatcagatt actattgatt ttcatccc
//
LOCUS       KCLJ01003663             338 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 408515cal ultra-conserved element locus
            uce-3241, sequence.
ACCESSION   KCLJ01003663
VERSION     KCLJ01003663.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 338)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 338)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..338
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="408515cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>338
                     /note="ultra-conserved element locus uce-3241"
BASE COUNT          118 a           65 c           49 g          106 t
ORIGIN      
        1 tgtgaacgac tacaattatt ctgcagcaag aaaaggcccc gaactactta aagatttaac
       61 ctttacttcc acctaactga tgccataaca atagtgctta gtacgtctca aggacaaatg
      121 atcagtctga gctgtataca atccaagacg tgttatcgct ccagcaaact gttgtcctaa
      181 aaattatatt cattgttttt caaaatgtta tcaacttaat aaataaatac ctttcagggt
      241 gaaaaatgtg gcagtacttt attttgtttg taagggcatt ctttatcaac agtattgata
      301 aaagcaaaac aaaaccaaaa attacctgtt tctactct
//
LOCUS       KCLJ01003664             532 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 408612cal ultra-conserved element locus
            uce-5987, sequence.
ACCESSION   KCLJ01003664
VERSION     KCLJ01003664.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 532)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 532)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..532
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="408612cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>532
                     /note="ultra-conserved element locus uce-5987"
BASE COUNT          172 a           86 c           97 g          177 t
ORIGIN      
        1 tttattccat cactaaaacc acccaggcta aagaggttaa taccaattat aaactcacag
       61 ctcattatat acttctcaaa ctaatacaga tacaacatga tttaagatag gaaactgtgg
      121 ctaaaggaat tagttgtctc ggcatgaaac tcggtttatt taatcaatgt tgtttccact
      181 agaaaagtgg attagttttt ctttaagaca gagttaaaag ttttgcagct aatttatttt
      241 aataagcatt cagtcactga ctgctgcaga aaaaggctaa actgtaatga agagccagga
      301 aagaaagcat gacttaatta tttttctggg gtggataatg aataaattag ccacgctgta
      361 ggcttgctgt ttctatagaa tttattactt ttgctttaag aaccatatca tgacaaagtc
      421 aatttttctc ctgactgcaa actgattgat ggggtaatgt ctggttgtga aagacttcct
      481 cttcatcatt gtgttgccaa cgttggtatc acaaagtgag tttgaagttt tc
//
LOCUS       KCLJ01003665             637 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 408823cal ultra-conserved element locus
            uce-1345, sequence.
ACCESSION   KCLJ01003665
VERSION     KCLJ01003665.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 637)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 637)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..637
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="408823cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>637
                     /note="ultra-conserved element locus uce-1345"
BASE COUNT          209 a          111 c           95 g          222 t
ORIGIN      
        1 tataattttt aaaaaagcac aaatccatgt agctgtttat aaaactctta tttaatgggg
       61 tctttatccc ctgaactaga atccaatata atttgccatt aatttattga atctgatttt
      121 ggacaatgct tctgtagtgt agatgcacgt cccggtatct tatttttatg tataaagaaa
      181 gcaaacaatg aaatctgaaa accagttgag attatgcttg cataaactct aatttgcaca
      241 gttcacagct actccttgtg cagtaattgc tttatgcggc tgtaatcgat aacctgtgaa
      301 gacagcacat catctaaacc ccattccaaa taatatttct gtgtagtgtt agctgtgaat
      361 ttaccttgta cagctctatc tctataaata taattccatg tattaatagt cacagaaagg
      421 ctgtaagtga gcaactattt ttatgaaacg caccactatg gataaattaa cttttacaga
      481 aatcttgttt actgtatgat attctaaacc actgtcaaat aaaatatata tccaaaaatc
      541 tttctcaatt gtatatagtt tgtgttaatt ttgagtaaca tgcttcagtg ttaccctgac
      601 aaacagccat gcatatgagt agagtgctac tgcttat
//
LOCUS       KCLJ01003666             506 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 408933cal ultra-conserved element locus
            uce-4071, sequence.
ACCESSION   KCLJ01003666
VERSION     KCLJ01003666.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 506)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 506)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..506
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="408933cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>506
                     /note="ultra-conserved element locus uce-4071"
BASE COUNT          126 a          114 c           97 g          169 t
ORIGIN      
        1 tcccatctct gtctcctaag ccatgttttc tcctggatct cttttgccag cccaaagcag
       61 aggtcacatc cacacgacct ctttgctggt acaggaggct gctaaataat tcacgtggcc
      121 ggggtccaca tttgtttttt ccactctcct aatcaagatg ctcatttaat tctattccag
      181 cacctgttca gcaattaaca ccctacaatt tgcatcttac cctgacattt gctatctttc
      241 caattagttt ttatatcagt ataattaggt agggttatta cagtgcatca agcagggtcg
      301 aggatattcc caagccttta agctctttcc cagatttgtt tagggaagcc actaagggta
      361 aatggttgat taggatcact gtttttcttc ttcattcaga tcaggaaact gtttccccat
      421 gtggcccatg aaagatcagg gaaatatgtc agtctgtaag aactaatatt atgtagttcg
      481 tgactttttg ggtgaattta cagggg
//
LOCUS       KCLJ01003667             731 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 409045cal ultra-conserved element locus
            uce-3873, sequence.
ACCESSION   KCLJ01003667
VERSION     KCLJ01003667.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 731)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 731)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..731
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="409045cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>731
                     /note="ultra-conserved element locus uce-3873"
BASE COUNT          235 a          126 c          140 g          230 t
ORIGIN      
        1 tatggagcac gtcaacagag acggcttttg ggtgcataca cattttttga tataatagga
       61 caagagcttt tatagtcatt agtacccatg tttaccactt gcttgctttc cagtctgcat
      121 ggtattataa tttgaaaata ttatgttacc agggtaatga acaataaaaa aattgcaatt
      181 catcctaata aggttgaatg gtaacccaca tgccttggac atttctagcc aggcataatt
      241 tatccacatc tttggctgtg aaacagtgtg gatcttctta actgagtccc tgacagatgg
      301 tttaagcatt ttcaggacta catttccaat cactttgccc atattgcaaa attggccttg
      361 aaaaagggta aagagttgtt atgctgcatt aacatctctt ctgaattgct cgctgtgaag
      421 gacatgaaaa agcaggaaat cagaaaagca gtgttttaaa aatacacgtt acaaatgttg
      481 cataggatga tgatcttaat ttatgcccct cacctcaatt acaatgtgaa tgtggtgata
      541 atgaaaacaa atgattcaga tgccattcat gatacaagaa atgttaaaag tgccgtaatt
      601 agaaagactt atagtcttaa accctgctga tggatagcac aattgactgc tattagatga
      661 actgggattt ctgagttttt gctactttga gtggaaaggc tcaaatatct gcattcattt
      721 ctgcatgaaa c
//
LOCUS       KCLJ01003668             599 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 409157cal ultra-conserved element locus
            uce-6652, sequence.
ACCESSION   KCLJ01003668
VERSION     KCLJ01003668.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 599)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 599)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..599
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="409157cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>599
                     /note="ultra-conserved element locus uce-6652"
BASE COUNT          197 a           96 c          125 g          181 t
ORIGIN      
        1 ggagaagaga atctctcttt cagctggttt aattaccccg acaggatgcc agaccagaca
       61 agatggaggt tcactgtact gtatgcattt ctgataaatg ggaaaagaat agatgacctg
      121 gcagaaggct cagacaataa catgtgattt acaggacatg aatgcagcta ctataagatt
      181 tatctgacag ccctctccga tagtggactg ttgagtatcc gatggaatga tttctagtct
      241 ggaaagtctg ctactgagta gccatacaca ttatttattt attagatgtt ttgggttgaa
      301 accattttta aatgatgcac ttcacaatgc tcagccataa atttagtttt aaaccctaga
      361 agggaggtag tgttattgga atgtgtgtca gactgaatta ggatgagcaa cactacgctt
      421 ttataaagtg gccttgaatg caacgtcaat tccttcaaaa atgatattaa tgtcaaataa
      481 gcaggaacac tttgcagtaa tattaaatga aggattcttt atgttttgat agatttatag
      541 aaatgtaaga gagacacgtc tcaaaatgta gcgtgtctat caaaaaacac aactgtttt
//
LOCUS       KCLJ01003669             718 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 409264cal ultra-conserved element locus
            uce-4531, sequence.
ACCESSION   KCLJ01003669
VERSION     KCLJ01003669.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 718)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 718)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..718
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="409264cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>718
                     /note="ultra-conserved element locus uce-4531"
BASE COUNT          189 a          157 c          172 g          200 t
ORIGIN      
        1 cggcggccgg gcgcgcctcg cctgcagccg gagccattca tcccccgccc ctttgttcgc
       61 cctgagagta acgccgtgaa ttaaaagaaa tgacaatatt tcgtatctgc tcgcccggcc
      121 aggagaaggg cccttgagcc tggcaaaaat caggcggatc attcatcgtg ccaccccgca
      181 cctgtgggct tggcattgaa aaccccgcgg acctcttcct attcaaccta attattcccc
      241 taaggcgcac aatggttgaa atggagcagg ttggagtctg tttattggtc gtaaatgttt
      301 ttctgaagat cttctgaatc tcattgttag ctcgttgttt gaggctgccc tctttctttc
      361 agacgagagt agccttggac ttttcaattt tcaatcgtaa catctgctta atcgtacgga
      421 tcaaaatatg gagacacaaa acatatgtaa tggttgattt gttaaatcct ggtaatgagt
      481 tattaacaag ggaaaacaat agggcaggat ggtgagagcc ttatggtaac agagtcactt
      541 tatgcaacgc ctgacgtttc ccttcttgat aaatggaact aaggtctgag cgccaggtga
      601 tagcaagaaa atcaatgtct ttaggggccg gcaccgagac tttttttcta tgtgaaaaat
      661 taggagacat aaaatttaat tggctgatca ggggaaagca gtggtcttaa gtttaatt
//
LOCUS       KCLJ01003670             599 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 409376cal ultra-conserved element locus
            uce-4353, sequence.
ACCESSION   KCLJ01003670
VERSION     KCLJ01003670.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 599)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 599)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..599
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="409376cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>599
                     /note="ultra-conserved element locus uce-4353"
BASE COUNT          182 a          139 c          116 g          162 t
ORIGIN      
        1 cctaattcaa gattagctgc atagacaagt gactgcaaac tgtcatatct tgaagtttat
       61 gtaaataaag ggctgaagcc ttgaggtttc taaattaacc acctatgttt caatgaactg
      121 tcttctaaaa tgttctgacc tacaattttg attaagacat aatatgtttc ctacagccca
      181 ggggaacatg caattagaat acttactaga tgagaaccgt ccttaacttc ttgtacttgc
      241 tgcacctgcg gttcagccac aactttagtg tcctgatcag aagtcatgag ctgtctgctt
      301 tttggctgct cagagagaac tttgctggtc acctttgtaa gctgcagaaa taagaagaca
      361 aaagattcta agtggttgtt gaaattcctg aaaaccacag ccactccacc ctgactcaga
      421 gcaaaggccc aaagaacttc cacacaattc ggtcgggatt atgcatccag agaaaacata
      481 aaatgaacct tgcagataca ctcagctccc agtcactggc tgccctggga ttacagatga
      541 ccacttgcca cagcactggg caaggaaatt ccactgggaa agcttctctt gattctcac
//
LOCUS       KCLJ01003671             669 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 409487cal ultra-conserved element locus
            uce-6882, sequence.
ACCESSION   KCLJ01003671
VERSION     KCLJ01003671.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 669)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 669)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..669
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="409487cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>669
                     /note="ultra-conserved element locus uce-6882"
BASE COUNT          205 a          102 c          153 g          209 t
ORIGIN      
        1 ttagtaatgg gtctgttaat tttccttgta cttcttttag gcagcctctt taaaagcatg
       61 ggcagtttgt actaagttgg tgcagggtat ccagacagaa ctgaaaggac agattctaat
      121 gtcagcaaaa ctgatttgaa agaagtattg attccatgtt gtattttata tctgaagcag
      181 ccaatggcaa atgttgtcaa aatggaatca gatgtttgta acttaatact taagaaaaat
      241 gatgagtgca tgtttttgac tttaagtatt ctctatgctg cctggcttaa gacataaact
      301 gatgtaaaaa taaatgactg cctgcataat ttatgtaatg tcttgctccc tgatcctgtt
      361 tgtattgatt tttctaaaag gcttttgtgg ccacaggaac caatctgtct ctccagtttt
      421 ttccggccag ctggcagggg gagcagcgac agacaccgac ccgggaatat gttgactttg
      481 aaagagaagg aggcaaggta aggaggaaat tgttgaaact tggtatagac cacgtatgat
      541 gtgagatttg tagtatttca cacctccatg agtacaagtg aaagaaagat aaaattttag
      601 gcaaatggaa gaattgggaa ctggtggctt tgcattttga aaaagagaaa tatctactgt
      661 catgctatg
//
LOCUS       KCLJ01003672            1000 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 409597cal ultra-conserved element locus
            uce-1964, sequence.
ACCESSION   KCLJ01003672
VERSION     KCLJ01003672.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 1000)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1000)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1000
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="409597cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>1000
                     /note="ultra-conserved element locus uce-1964"
BASE COUNT          296 a          181 c          224 g          299 t
ORIGIN      
        1 ttttttatgc aatgaagact ttgatgtatt ctgctgtgaa gcacttgtaa gattatgagg
       61 aggagtgatg atcaatatag gagcaacatt ttggctggac cagtgacagc agagccattt
      121 ccgccaaggc agcggggtga ataatgcaaa agccatattc cccttgtgtt taatcttgca
      181 ttgtttttgc aaagaaaatt tctgcttgct ttctaagtca tgtcatcctc ggttgtcatc
      241 ccgtctctca aaccatcaaa acggtattaa atgttgcaaa gctgtgcagc tagagaactt
      301 tcaaaagtca gaacccattt gcagagcagc cgttgtagaa aatgtattct gttctcggca
      361 gaattttcct tcagttcttt ccactgagaa gtttactgat ttctcccagt ggaatctgct
      421 ggaatttatc ggttcatggt tggcagtcac agattaaggt aaatgtcgat ccgtaatgac
      481 cctctacatg ttagtattgc agtaaagctg ggcttttatg tcaaagatat cggagaggga
      541 gctattacac atgacagggg tgatcaaggg actccagacc aaggcaagca ttattaaata
      601 ttgactagtt ctgtgattta tgtagagctg gaggaaaaaa gtgacttttt aaccattata
      661 tattcttcag caacgaaaac cagccattta tctcctgctg gtaataaaga acagagtgcc
      721 tgcatatttt agtggaggga aaacctggcc ttataaatga gatggactct ttcatgataa
      781 catttcagtt tgctaattgc caaaagcaaa acaggcaaat tggaagcaat tataagagtt
      841 gacttgaact gcctgctatg ttagttcaac tcaggagagc cgggtggtgg tggaagaatc
      901 actggggaac agaacccaga aaatttcatt atgtttgttc attgttgctg caactttgct
      961 ttgcaatgca aaagaagtta ggagtacttc ccagaagtca
//
LOCUS       KCLJ01003673             741 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 409709cal ultra-conserved element locus
            uce-1533, sequence.
ACCESSION   KCLJ01003673
VERSION     KCLJ01003673.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 741)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 741)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..741
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="409709cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>741
                     /note="ultra-conserved element locus uce-1533"
BASE COUNT          239 a          153 c          146 g          203 t
ORIGIN      
        1 ttactttaaa tttcattgca ctgggtaaga aaaaagagtc ggacatgctt tggagaccat
       61 caaatgggtg agtagccaag caacgaaaga aggaaagata aagatgtaca taggttctca
      121 ccttcagata ccttggggct ttctgttcct ataggaaatt atacaccacc gcctatcgag
      181 atccagtagt tgcagcggct tattaaacct acagcatatc tgttttattt aacttcttgg
      241 tggaaagggg ccaggaaaac aaaatgtact taaatgctga attttttttc caggctgaat
      301 gcctttcatc cagtaagaca ttcaaagcag tgacccagca aatggattga aaaagcaatc
      361 ttccgtctca gtgccacatt atcattccta ttcagtattc tcggtgagat atctcaatca
      421 gctggatgtg tgtgtaagtg acagcgcagc ccattgctgg gttaattaaa catttgactt
      481 taacaccctc cccatcatta agcaaataaa aacagataat tcaaactgca cttcatccac
      541 ggggtacaca acatacatgt caaaattaag agagtccaag gccctcgggg agttctactc
      601 ggggaggtaa tcagtttaaa tcttatctgg tttatcaatt attctattga ttaaagcagg
      661 gtgattatac aaaactccct cttgccacat gggatacatg taagcagagc aggacaacac
      721 acacaggctc aaaaacgatt t
//
LOCUS       KCLJ01003674             496 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 409823cal ultra-conserved element locus
            uce-5736, sequence.
ACCESSION   KCLJ01003674
VERSION     KCLJ01003674.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 496)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 496)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..496
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="409823cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>496
                     /note="ultra-conserved element locus uce-5736"
BASE COUNT          139 a           95 c          102 g          160 t
ORIGIN      
        1 atggggaatg tgagaaaaca ctaaaatgca caccagaagg aaaaacctcc tcgaccatcc
       61 agtatattgt acatctcttg gctggaaaac atattctgga gcatggtagc gtgcgcggat
      121 gtgatgtgct actttcctaa cagtaatgaa ttttatgcct gcctgtttct gttcctttgt
      181 ctatttttaa ttcaaatatg taaaagcttt tcttaataca gagtcccagg tgtcagttgc
      241 tgcctggagt cccttttctt tcctctattg ttctcttaat tgttacttca aaacaattag
      301 ctgggcattc atatgcaaat gaatgcaaat gtacagggga ttgggtgtga gagaatacca
      361 ccactcgtta atttccactt caaggtctgc tggtaggaac aacaaaatta acaatgtatt
      421 tttcctgggc cataaagggt gaactcgcaa agattccagg gcaattgtta agattctgct
      481 gtttcttggt aagatt
//
LOCUS       KCLJ01003675             508 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 409930cal ultra-conserved element locus
            uce-2289, sequence.
ACCESSION   KCLJ01003675
VERSION     KCLJ01003675.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 508)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 508)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..508
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="409930cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>508
                     /note="ultra-conserved element locus uce-2289"
BASE COUNT          158 a           99 c          114 g          137 t
ORIGIN      
        1 caaaactatg atagccagga tatgaaagat tcactgagat gtccctgtcc ttaatgagaa
       61 atcacaagga agattactgc cactgcctgc ctgcacgctc tgacttatca gttggtctgg
      121 gagtttaggc tcctgcgata ttgaatgaag attataagcc agatgggcca caaattctgt
      181 caagccttct tggcagctgc tctcattaca aaagccagac agccttttcc aaaaataaga
      241 atgtgaagca aattgggctt atagaccctt ataatgcaat tgcacgcaga gatggggacc
      301 tgagcgggca ggcagaaata ttattgatgg ctgctgaaaa cagggaataa gatgttatta
      361 agccaagtca gagatagata tcgatagcta atataaagcc tttattggtt tacaggctcc
      421 aggaaagagg gttcagagct tcgacccttt gctttgcttt taatttcact agagatgcag
      481 ggtttatgaa taaaacatat cttcactc
//
LOCUS       KCLJ01003676             337 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 410040cal ultra-conserved element locus
            uce-2336, sequence.
ACCESSION   KCLJ01003676
VERSION     KCLJ01003676.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 337)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 337)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..337
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="410040cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>337
                     /note="ultra-conserved element locus uce-2336"
BASE COUNT           95 a           65 c           75 g          102 t
ORIGIN      
        1 taactgggag tatctgaaag gggttctttg ctttttttta tttgcctgac tgacagagga
       61 tttaaatgca aagtggatct aatgcacacc ctgaagtcgg ctggcagtat gcaaatgacc
      121 tgtcagatta aaatctgaat gaaagagata acaagcttat cttcataaca aaagactctt
      181 agggcaaact atttgacgca gtgttgatgt ttgttttaac ccgtggactt tggacagtgc
      241 aatatttcag gggcttcact ctcctcactc cccagcgctt gcacgcctgt gtatttgtat
      301 ttgcactggc aacaaaaggc aagtgctgtg ataataa
//
LOCUS       KCLJ01003677             882 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 410149cal ultra-conserved element locus
            uce-1052, sequence.
ACCESSION   KCLJ01003677
VERSION     KCLJ01003677.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 882)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 882)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..882
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="410149cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>882
                     /note="ultra-conserved element locus uce-1052"
BASE COUNT          269 a          177 c          148 g          288 t
ORIGIN      
        1 agtaattcca cagaagatct cacaccgcaa aaacatcatc tcctcataat ttctgaacac
       61 taatacaaac agatttctgt ctgaacatct taatgcaaat atactgcagt tgtctagtgg
      121 aaaacagcac tgtaatgact tccactatta aatttgtgtt gcatttgaaa aggcaatgac
      181 tgcatatgaa gcgctaaccc tggttcattg tttctctcat ctctccgaac atccctattc
      241 tggatccttt atttatcaag attaatcact gtaggcatca ctttttgtgc atgccatacg
      301 ttcataggaa cagcacttaa tccagaaagt tgccggatgg atggctctta caatgggcat
      361 ttacctctga aattggtgtc tatgcttgat gttgcatgca tctagtttgc atacaaataa
      421 agaattatac ttgtcatgaa gcaggtataa tcaatgaaag gcacagctgt cttaatcagg
      481 tttcgttagc ccgagcagct ctctgtgagc aagataaagt gtttttcaga ggtgttaata
      541 attactcata atctctccta tcatatcgca agacttttta catgcctttc aattttaagc
      601 aacgattaaa gcaattaaga ttgctgcatt tacaagctat ttttcattcc cagaaaatat
      661 cctacaccta cttgtccata tggtactttg caattggaac ataaggatag tttaggaaaa
      721 ttacgtatgc tcttatccct aatctgccta ttactggata gtatcttaac taatgaacct
      781 gactttcaaa gctgctctta agtggtggtc ttgtcatatc agagagacac aaaatgtgta
      841 acccaatcag tcaaggatgc tttgaacaag tttgttttgt ta
//
LOCUS       KCLJ01003678             587 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 410263cal ultra-conserved element locus
            uce-3377, sequence.
ACCESSION   KCLJ01003678
VERSION     KCLJ01003678.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 587)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 587)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..587
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="410263cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>587
                     /note="ultra-conserved element locus uce-3377"
BASE COUNT          194 a          114 c          122 g          157 t
ORIGIN      
        1 aatcaaaagt gagcagacaa aggtcaaaat accaaaagcc acaagaacat taacacttag
       61 gatataaaga ttccctaaga aactaatgcc tgctctttcc ccagataaag cagacacctt
      121 atcttgggga gtttacaaaa tggagccaag ctatacaagt aagcacttaa ctaaagcagg
      181 gcctggctct tttagcagtc tgcagtcatt aaagctccag gaaagtctcc caggagccaa
      241 tatgcttgct taagtatatg ctgtaaaagg tccctgagat ttacaaggag ctgctccatg
      301 ctaagctagg caccatctga taaacaagca attttagctc caggctaaac gatgctcttt
      361 gaggctttga tttacaatgc tgcagatgat atatttgtag ttctaggata ggttctgctg
      421 tggacctgct gtgattactc atccatgaac taagttaggg ctcagatctt caactaggag
      481 gtcagaaaat tgtcagtgga gcaagaaatg tttgataagg tttatttaga tgctaaccac
      541 atttaaatta accaaagaga ggtgaacaat tcttaagctt tctaggg
//
LOCUS       KCLJ01003679             295 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 410372cal ultra-conserved element locus
            uce-5042, sequence.
ACCESSION   KCLJ01003679
VERSION     KCLJ01003679.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 295)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 295)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..295
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="410372cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>295
                     /note="ultra-conserved element locus uce-5042"
BASE COUNT           70 a           77 c           70 g           78 t
ORIGIN      
        1 aatatttcat gcttggaatg tttgagccga gatgatcccc ggtggctctt tttattatct
       61 tgccctgcca gctttgcagt tctctgtcag gaatgaagta atggcaacca gtcacggcac
      121 ggatgaatgg atgacccaga tggagatcag tggcctcaac agttacattg tcaggcgtta
      181 catagcaacc cccaatgggg tgctgcgcat ctaccccggc tccctcatgg acaaagcatt
      241 tgatcccacc aggagacaat ggtgattttt agggtccctt cagcaatcat ctccc
//
LOCUS       KCLJ01003680             513 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 410464cal ultra-conserved element locus
            uce-1161, sequence.
ACCESSION   KCLJ01003680
VERSION     KCLJ01003680.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 513)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 513)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..513
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="410464cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>513
                     /note="ultra-conserved element locus uce-1161"
BASE COUNT          170 a           94 c           96 g          153 t
ORIGIN      
        1 gcggggctga taagtgttca ttggcgcaga gagtaattac ctatctgtca gcgttgctgg
       61 tgtgtgcgaa atagtataaa tgaaacatac ataatgtaca gcaataatat cgggcatgca
      121 gaacctaatg cattatcatc attctcaggg ctcaggttta tgtggctgcc accactgagt
      181 aaatgccttc tagccatgat aatttcattc taatctctgt tccatattat aattttcata
      241 gctaaaagat actgaggagc aatacgtttc aatcaagggc taaatagaac acaacctgta
      301 actgggtatt ttatacacct atatataaaa aaaaaattta gtcaatttat gaatagactg
      361 aaataagctg taaatttatg gatgacaaac tctgtctgta gcaatgtcac aatgtctgga
      421 gacaggcttt acatatcctc tacaagggat gccagctttg tctatcatat ctcacaaaag
      481 aatccaaccc tctggaagaa taaaggtttc tgt
//
LOCUS       KCLJ01003681             454 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 410571cal ultra-conserved element locus
            uce-7056, sequence.
ACCESSION   KCLJ01003681
VERSION     KCLJ01003681.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 454)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 454)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..454
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="410571cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>454
                     /note="ultra-conserved element locus uce-7056"
BASE COUNT          124 a           95 c           87 g          148 t
ORIGIN      
        1 aaaactgcaa ctttcatttg ctgctaattg tttggaattc tttgaactca cgtcttgcct
       61 ctgcttggta cacctcataa acagatggag tgtttgttga cgtttctgtg acagcttgaa
      121 aacttgtttc ctacctctga gctgagccct ttctgccttg tcctccatct gccatctcat
      181 tttaaaacta gcagaacaac tcaagtgaag caattccgac tttttccatc tgtgcacagt
      241 taattaagag ggtaatgaga gctccgaatg aacaagccct gcattaattc aagatatgat
      301 taagggaaac atctatatat atgtgcctac atacattttt taaaagcctt gagccccttt
      361 tgtctgtccc tgtgcttgcc agcattatgg ttagggatga tttaggaaag atgactaaag
      421 aaaactgagt ctgtattcgg agcatgaaat ctgt
//
LOCUS       KCLJ01003682             442 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 410682cal ultra-conserved element locus
            uce-7363, sequence.
ACCESSION   KCLJ01003682
VERSION     KCLJ01003682.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 442)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 442)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..442
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="410682cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>442
                     /note="ultra-conserved element locus uce-7363"
BASE COUNT          127 a          114 c          100 g          101 t
ORIGIN      
        1 agctctcctt tctgacagtg acagcttccc tggatggatt ggatgaaatg tgccctgttt
       61 ggatgctttc ggaggatgca acacatctga gacttccaga aaacagggga agcagcatct
      121 aaatcaaatg ttgccagcaa gactcggggg cagagacaat acttgctgaa gtctctctag
      181 tgccttttta tggcagacat gacagccaat cctgatccag actttgctca cgctctgtag
      241 aaaagagaaa gtctgatcat cacaatcaca agtggcttcc agtcaagcat aacgagcagc
      301 tgctgccagg aggaggagtg caacgctaga cccagacttc caccaccgct cccatcatgt
      361 ccaaactctt cacgtgacca tgaggcacag acaatcacac cacaagtttg cacatggaaa
      421 catttgtgtt gccttacaaa tg
//
LOCUS       KCLJ01003683             704 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 410781cal ultra-conserved element locus
            uce-5012, sequence.
ACCESSION   KCLJ01003683
VERSION     KCLJ01003683.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 704)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 704)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..704
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="410781cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>704
                     /note="ultra-conserved element locus uce-5012"
BASE COUNT          201 a          129 c          143 g          231 t
ORIGIN      
        1 tagtctacca ctaaagtcaa tttctggaat aaggtgctat ttctaaataa ttaatcatcc
       61 ttctatatgg aattagtatt cttttgttag cagaatgaag acaaaaggta tattcagtgc
      121 atttccaaag accttttaag tagctcaaca aagcacataa tgcaggcctt gtcttacaag
      181 tctgcgatga tacagtttaa tagtgttata aggctatggc ggtgtgtagt tgtcacgatg
      241 gtagattgtg ctggtctgta tagatttact gtcattcttt aggcttttca tacatgacag
      301 aggttgtctg aagcacagca gggacatgaa gcttgcaggg gttaagtgtt acttgcctcc
      361 tggcttgcta catagtcctc cctgcacaca tacagagatg aggtgcaggg tacatccgtc
      421 accgggctga tgacatgatg gattactcat gtcattgtca gtacagtcaa aatcactctg
      481 ttgctgataa ggtggcccct tttctttact ctggttgagt gatgctattt tccccctggt
      541 tttaaaactg tagctcacac aaacatccct taaatcaaag atggagaaga ctatttttaa
      601 ttgtacatgg aacatcggag acaaatttct ttgaaaatta ctttcagaat agacagatat
      661 gtgtcaaatg ttttacatca cttgattttt tctgatcctg aaaa
//
LOCUS       KCLJ01003684             825 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 410888cal ultra-conserved element locus
            uce-4523, sequence.
ACCESSION   KCLJ01003684
VERSION     KCLJ01003684.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 825)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 825)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..825
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="410888cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>825
                     /note="ultra-conserved element locus uce-4523"
BASE COUNT          249 a          137 c          151 g          288 t
ORIGIN      
        1 ataaatcttg agtataattt acattgaaaa ataaggatcg atatttgagt tttatcagtt
       61 tggatccaat tccctgaaac ataaagtttt ttagaacatc aaaacaagta aagagcactc
      121 tcaagttcaa aacagttttg ttggaggaag agttgaaaaa aaaatggaat ataagttttg
      181 gcttgacata atccaggtta aatctgtact tacttttgta aaggctattt tatcactcag
      241 agaatgtcac atcaattgta aagccatcag cctcaaggct tgttggtgat tgcttcatat
      301 ttactgttag tccagcaatg gagatggtac ttttacagtc tttggacaga ctagtgagtg
      361 tgacatttaa agtgttgatt tttgcagcac ttatgttaat tgttgtaatt ttcctgatga
      421 accaccattc tggttccctg atgcagccaa gatagtttta cattttctat gcaggcctct
      481 ttgccatttg gtctgtgtag tgtcagcttc gagtgctact gaaagcagac aaaattgcaa
      541 gcaaattgca tcagattgcc aacattgtga aaaggtaaat tgcttgcaaa tctatttaaa
      601 ccactgccct attttcatca gcttcagtac ttggtattca tgattgctta attggcgacc
      661 tttcctattg tgtagtgctt tatggtgtaa tggaaagcga tctttaccaa accaattacc
      721 ctttttttct cagcactaca ttattgctgt gattgcaact gccagtcctt tgtaaatgaa
      781 ctttctgatt tcaatgatgt ttttaaaatg taagatagaa aaaag
//
LOCUS       KCLJ01003685             299 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 411000cal ultra-conserved element locus
            uce-6622, sequence.
ACCESSION   KCLJ01003685
VERSION     KCLJ01003685.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 299)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 299)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..299
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="411000cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>299
                     /note="ultra-conserved element locus uce-6622"
BASE COUNT          104 a           58 c           49 g           88 t
ORIGIN      
        1 attacagagg aagaaagctc ttttttaatc ttacagggct ggaatattgc aataactgtt
       61 ccatctgatt ttaaaaataa gatttgctaa aggtcaacgt atctcctggc cacatatgca
      121 gcaacattga aatttccttg gccagggaat aaaaagattc tatcattaaa aataaaagcg
      181 caaggacatc ttgcaagccc atagggtttt tagaaagaga aggagacatt tcgttatcaa
      241 ctagcaatca taagattttt aagcaatatc tctaatctgc ttctcttctc cccacaacc
//
LOCUS       KCLJ01003686             598 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 411107cal ultra-conserved element locus
            uce-3695, sequence.
ACCESSION   KCLJ01003686
VERSION     KCLJ01003686.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 598)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 598)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..598
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="411107cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>598
                     /note="ultra-conserved element locus uce-3695"
BASE COUNT          205 a           93 c          104 g          196 t
ORIGIN      
        1 ttcaaaccat gcagagtagc ttgtgttgca gccgaaccaa aatacaaagt ttttgattaa
       61 tcaagcaagt ggtgttattg agcaaagcaa atctgtaatc tgagtaaata ttacacagta
      121 ttattaaaca agcttaaaag agaattgtac tagacttaat taaggcttca agtaaagctt
      181 gcttttattg gcaatttttt gttgcaacaa gaaaactaag aattaagagg atggttggca
      241 gcaatattga tatgctaatg gataaacatg ctaatttaga aaaaaactaa tcagcaaaga
      301 cattactaat ggaaatgtac tggaaaatgg ctaatgctgt atgcagacct ggtatctccc
      361 aaattaagaa gaactcattt tgtgtttata attgtaactt ggaagctaag ccttgatctt
      421 ctctctgctt tgctttggtt aatattcaaa gatatttcag atgacctgtc ctgtaccatg
      481 acacctgttc agcttctcta taattatgct gctgaaatta catgttctgt ttattgaaag
      541 gagagctaaa agtcttactt ttttctatct aatttaccag aaacttaaag agaccctt
//
LOCUS       KCLJ01003687             640 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 411216cal ultra-conserved element locus
            uce-4039, sequence.
ACCESSION   KCLJ01003687
VERSION     KCLJ01003687.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 640)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 640)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..640
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="411216cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>640
                     /note="ultra-conserved element locus uce-4039"
BASE COUNT          213 a          113 c           89 g          225 t
ORIGIN      
        1 cacatacttc atgaattata catgaaactt tgtctcacag tgactgttgc taaaagactc
       61 tttcatcact cttatgttta aacaaaccac aatggttttt aaataagtct gatcaaagga
      121 gattattata aagtgctaag aatgacttcc aaaatagtgt acatttcata ttgatgtgtt
      181 tctctgcaat ttgggtcatg ttcctctgct cttagttgtt agcagaatga tgggcagacc
      241 attgcattcg ctttcaaata caacattgat agctggattt acatttcttt ttaagactca
      301 gctttagcaa acacgcctta gatttcagac ataattctgt tattcaaatg ggagaagagt
      361 ttgatagcta tgctaatcac ttttatctga gaaaacataa ctaatagctt ggtttacatt
      421 tgcctgcatt tatgagcata attttagcgc ataattttat tgcaccataa aacataatac
      481 tgcattagcc tgctcttaaa aaaagttacc ttagagtgat ttgtacttaa accttcaccc
      541 tacatttaaa taacagtatc atttcaaaag ttttaccttt aaaaatcaat tttaaaacaa
      601 acctgtataa caatttaacc tacaaggcta ttatctgtag
//
LOCUS       KCLJ01003688             659 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 411327cal ultra-conserved element locus
            uce-1193, sequence.
ACCESSION   KCLJ01003688
VERSION     KCLJ01003688.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 659)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 659)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..659
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="411327cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>659
                     /note="ultra-conserved element locus uce-1193"
BASE COUNT          206 a          117 c          124 g          212 t
ORIGIN      
        1 tgttaccaaa gacaaaaatt agggtgggag caacaaggct tcctccataa tagtgttttc
       61 ttcatttcaa gctgatcagt aggaagtgga tttagaagtg ctttaaatca tttcacatca
      121 tttactggta atctaaccag catgaactgc atgtacccta agtgctgatt ttttaaaaag
      181 cataagagga agagcaaaag aactttttat tctaagtcat tctgtaattt acacattttt
      241 gtatcagccc acttactagt gccatacata agtgtttcct ctgaacagat ttaattttta
      301 attttcctga atcagtgtta accaggaaaa aggtaattgt tgtcaagagt attcaaactg
      361 tcagaatatc attcaatcta aaagctgtta gaatctgtgc aaaagtaatt actgaaactc
      421 tattcaactg taataataac ctgccactga tgacagcaat tactggggaa agtgtaatag
      481 aaatcaaagg cgcatttttc tctgacaagt acatttctaa ctaaggttta cattggttga
      541 atagtgttga caatgatgat gtgctgtatc actcttaatc acggctggca tgatgttaca
      601 gtttgagctg ctcgggggca ctaattgcct gtttcagctg acactggccg tgctccctg
//
LOCUS       KCLJ01003689             643 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 411437cal ultra-conserved element locus
            uce-4436, sequence.
ACCESSION   KCLJ01003689
VERSION     KCLJ01003689.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 643)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 643)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..643
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="411437cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>643
                     /note="ultra-conserved element locus uce-4436"
BASE COUNT          230 a          105 c          143 g          165 t
ORIGIN      
        1 ttgaaagaga aagcaaataa attctgccac attcccatca ctgtacttgg aacatagtgt
       61 ggtccaagga aaaatgctgc agaagcatct tttagaaata tcaactgcaa atgcttggta
      121 agaagtgagc tcatacatag cacaattgca tttctgaaca gagattagat taggctcttc
      181 tggagtagca aattaagaaa aatttacctg attgttacaa gcaacaatga tgtgctctgg
      241 ttctggcatt acattgcttt tctgggccac gagggtatct ttggtaggtc ctggaagacg
      301 ataggaagaa aagagtccat agtattgctt catgcagaga ggatggccag acagctgtcc
      361 acgagaaaag tcagtaggta aagaatggct gcagagaaag aaaaaacaaa gcaagaggga
      421 gagagacaga aaggaaaaaa aatcttatct gtcctttgtt ctgttacaat tagatcaggt
      481 ataacacaaa ttgaataata aaatgagata taagggaaat agatgaattc ccataccaaa
      541 gttaaataca tcattcctgg cagcttcatg catattcatt aagcaattgc gttattagtg
      601 gaaatggaaa tagtttgcaa tgtgccctga ctagctggga ccc
//
LOCUS       KCLJ01003690             415 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 411549cal ultra-conserved element locus
            uce-2031, sequence.
ACCESSION   KCLJ01003690
VERSION     KCLJ01003690.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 415)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 415)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..415
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="411549cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>415
                     /note="ultra-conserved element locus uce-2031"
BASE COUNT          103 a          124 c           81 g          107 t
ORIGIN      
        1 aatagctatt gaacagcagc taagtgaatg catgtctgca gtgtgagcag ttttgataaa
       61 cagcctctgc gggccacaca acggggataa tgtatcctta agtactgcca atgagctgcc
      121 attctgcaca gccaattact tctgtgcgtc tgtcactcaa aggaaaaatg actgagccca
      181 ttagatcaaa cctttgtcac tgttcctaat gcactcttag gcctcattaa tctgagggag
      241 cagcaacaca gccgccggtg cctcattgcc tcccccacaa caggcccacg tgaatcttct
      301 catctctccc ccaagtgcac cacgttaatc aagctctcct tattaccccg gtccctgtca
      361 cgccggagag cgctctctct cttaaatgct ctcattatgg tccatcttta gagcc
//
LOCUS       KCLJ01003691             451 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 411655cal ultra-conserved element locus
            uce-3348, sequence.
ACCESSION   KCLJ01003691
VERSION     KCLJ01003691.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 451)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 451)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..451
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="411655cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>451
                     /note="ultra-conserved element locus uce-3348"
BASE COUNT          139 a           77 c          116 g          119 t
ORIGIN      
        1 attataatcg ttacaaggaa atgtatacac agatgttgtg ggagtctgaa aaaaaaagaa
       61 aaaagccctt acgtggctga cagcctgaca actttgcata tgtgtgttaa caggagaatg
      121 tgctgtgttt gggatgaatg gagaagcggg cctaaatgac tttcagatta gctggaacag
      181 atggaagggt cacagttgaa caactttaca caggaacata aaggcaatgt tcaagtggag
      241 ttcattgcct ctgacagata ctgtcaatcg gggactctca gttaaccagc agcctgtcct
      301 tttaaagatt aaatttattg tgaggcgctg acgggagttt atctggtctg tgataaactc
      361 caccctgagc gaagcatttt caaatcaagc acaagggcat gttttgagga gaagcgagtt
      421 ccaggctgct ttgggagata taatttcggc a
//
LOCUS       KCLJ01003692             494 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 411857cal ultra-conserved element locus
            uce-1558, sequence.
ACCESSION   KCLJ01003692
VERSION     KCLJ01003692.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 494)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 494)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..494
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="411857cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>494
                     /note="ultra-conserved element locus uce-1558"
BASE COUNT          147 a          106 c          112 g          129 t
ORIGIN      
        1 ctataaatct gttttctcat gcccaagtag tccttgatga gacatgtgag gaaatgcaga
       61 acggagcaat aatcataaaa taaaagaatg agacagaaca aagccttttt tttttaagac
      121 acacacaaaa catttgttct gctccagctc tttgtgaact aattggctct cctggaggga
      181 caggtaattg tacttgacta cacaagctgt cctgaagctc ccttggaaag ctccagtaag
      241 cttccagtgt tagcagccat caaggatttc acaggtcagg catcggatcg atacagctaa
      301 aagcagcagg gactgtaatg tcgacagcag gtttcagaaa acgctgcaag tgccagtttg
      361 ttccccttca tgcagaagct caagacagct taattaaccc ttggaaaata caatttatcc
      421 agaggctctg caggtctgta ctgggcctta ttggtgagct gctggcagag atagtgtagc
      481 tggcagctct gaat
//
LOCUS       KCLJ01003693             807 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 411963cal ultra-conserved element locus
            uce-7610, sequence.
ACCESSION   KCLJ01003693
VERSION     KCLJ01003693.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 807)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 807)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..807
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="411963cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>807
                     /note="ultra-conserved element locus uce-7610"
BASE COUNT          246 a          156 c          166 g          239 t
ORIGIN      
        1 gctagcactt tgcatgtatg aatgacaaag ggacaccact ttcatattga tttaagcaag
       61 ccagtggaag aatgtttaaa catcaagtgc ttgatgtccc agtttgccag agcacctgga
      121 aatatcaaat taattccagg tgttctgcca gcttgctgct tttacagcca cacatacaaa
      181 atgtggctcc cagttccaca aataaaaacg gaatggtttc tgctcctaat gcctcgataa
      241 ctccgacata ttgcaagttc tggaaagaat tttaatctac atagaatggg gaggggagca
      301 agattttaaa tatgctgcat acaatttgtg atggtcatct ctaaaatgca gctccattat
      361 ccttttccat ttggaatgaa tgaggctaat taatttcagg ccatacttga tgaggtcagc
      421 accatacgaa gggtgcgtgc tagacattgc taatctcttt cagctgagag tgatgaatta
      481 aagatgaagc attcctttgc aggcctaatt tagaatgtat atcaaaaacc tacagcaaat
      541 aatactatac cctacaacaa aggaaaactt gttctctcag gctcccatgt agggttgatt
      601 ttaaaggcat tttcatttca ctttggaatt ccagctgtgg atgggtgaaa cagttcagaa
      661 aattcaagct ttctctcttt ctattgcttt tatggacaaa agtaggcaag ctaaggggag
      721 agagaaactg gtccgtgttt gatcctgtat atcctgtgat tctgactgta cactcggcat
      781 ttaggaaaaa gtacctgtga cgtgaca
//
LOCUS       KCLJ01003694             790 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 412076cal ultra-conserved element locus
            uce-1601, sequence.
ACCESSION   KCLJ01003694
VERSION     KCLJ01003694.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 790)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 790)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..790
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="412076cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>790
                     /note="ultra-conserved element locus uce-1601"
BASE COUNT          169 a          199 c          185 g          237 t
ORIGIN      
        1 ttggttcaga gctggcagct gatgatgggt gcacaggtgc tgtgcccctc tccagtcttc
       61 ccgtctctgg ggtactgggg actggagagc agaagcaaag ctgcttcagc tgaggcagtg
      121 ggtgctggct ggcatacagg ctgctgccag ctctgtgtca tcagtgcaca ccaagggcag
      181 ctcttctgct ctccttttcc tccagctcta ggttttactg tgcttttaag taattgtcac
      241 cccttaggga caagccttcg agaaggcaga gggctcgcat aactctggat cagtaaagga
      301 agcagttcaa ttagcatttc acacgccttt tcttccctct cttcttacct tccctgcagc
      361 gggcatgctt tccccttaaa ggattgtcct gtttctgctc cttgccagcg ttggcagggt
      421 gacagtagtc gagtgtgcaa acttgtgcta ttgtccccag gccaggggga gtcatggaga
      481 cccactaata tgacacagga aaatgtttgc tgatggcaat tctatgggct ttgtctaact
      541 ctttctccat catgacgact cgatttaagt ctctaactgt ttgactacag atgcaagagt
      601 actatccaac tccatccttt tgttcgggta gtttgaatgg gtaattcagc ttttgtgtaa
      661 ctcaattgag ggggcaaaca taaagacaag attcttgagc gctcaagctc cctttccatg
      721 gatatctgca catctcttta gagatttgtt cctttcctac ctttttctga catcatcctc
      781 cccttaaaaa
//
LOCUS       KCLJ01003695             503 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 412189cal ultra-conserved element locus
            uce-2599, sequence.
ACCESSION   KCLJ01003695
VERSION     KCLJ01003695.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 503)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 503)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..503
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="412189cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>503
                     /note="ultra-conserved element locus uce-2599"
BASE COUNT          180 a           95 c           75 g          153 t
ORIGIN      
        1 gttttataga agatgaactt ttgaaatatt tataaattta cattaatatc atccatatat
       61 accatgacgc atttcaataa ttattctaca gtacaatggg agtgcatgct caaacaaaac
      121 acctcagcag tattttaaag cagtaaacca cctagccaat ttctgtacgt tctgtagttt
      181 ttctaatcca ctctccctgt ggttgagcaa aatcgaattg cctctcacat ttgcagacag
      241 ctctgtgaag gtgataatag agctgctccc tgctgtcatg aggcaggaaa taggaaaatg
      301 gcatatgggg ctagaaagaa ataaaaagag aactaaacaa gaacaaaaga gatttcaaca
      361 aaggacaact ataacccaat atgctttgca agttaatctc ttttcataat aatttaacgt
      421 acttaatcat ttatctgcac acttctcaaa aattcaaatg cttgatatca acttctctgt
      481 aaagttttat tgcccaaaac att
//
LOCUS       KCLJ01003696            1005 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 412300cal ultra-conserved element locus
            uce-61, sequence.
ACCESSION   KCLJ01003696
VERSION     KCLJ01003696.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 1005)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1005)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1005
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="412300cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>1005
                     /note="ultra-conserved element locus uce-61"
BASE COUNT          320 a          229 c          155 g          301 t
ORIGIN      
        1 tatttactaa catttcccca tgtgtttctc cttttcagag ctgtggttat tttttttctc
       61 ccctaaagta tctgatcaga gattgtccgg taagagcact ttattagatc atcagtcaga
      121 gggttttaca agcaccaaga gctatgggct caaatgcagc acatcagttt taatagccca
      181 aggtctaata gtaaactgca gatactgctg agaactttcc atgcactgaa ctcttgaaaa
      241 agcaccatct ctcaagctta aatgcagctg cctctttcaa tgccgcaaat gggtaaattt
      301 gacaaaaaag ccaccattaa gactacatga aaggctcaag acaacatcct ttcaatgctt
      361 tgtacttcag taatcagatg tacttactca ccccctcccc caaacccgat caagaactat
      421 ttctgaatgg taggaaataa ttccactttg tacatctttt agttaatcaa gactttctat
      481 tcagcaattt gaccttttgt tcaaaacagg attatcagtt ttttcgccag ttaccaaggg
      541 cgactcgcat ggtgaacata attgcaataa tttgcaaaac accatggcaa cccacattac
      601 aactaggtaa atactggtct tttgtgctac attgttattt tcagagatgc tgaagtcaaa
      661 gaacgaatga caaatgaaca caaaatttat atttgctttg tctcaaaaga gaagaaaatt
      721 gataacaaga attgggggga aaccgactac agctgtaatt tctaacttga ttaattagga
      781 tggtaacagt ccttaacagt atattcaaca aacagccctg acttagtccc tccacccacc
      841 tctctctctt tctacactac taccactaac ccccacccca gacaaatttt ttcagctagg
      901 agaacaaaca actccatttg ctcttttctt caacttaatg gaatccttaa ttacagaata
      961 ttgttctcct gctcttcatt acactgaaaa ctgaaagtga gagag
//
LOCUS       KCLJ01003697             728 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 412410cal ultra-conserved element locus
            uce-7105, sequence.
ACCESSION   KCLJ01003697
VERSION     KCLJ01003697.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 728)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 728)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..728
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="412410cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>728
                     /note="ultra-conserved element locus uce-7105"
BASE COUNT          213 a          130 c          154 g          231 t
ORIGIN      
        1 acgctcacag gatggaaatg cagcctgaca agtctgaagc cgcgcgcaga aagagacaga
       61 taaactctgt taaccgcaga agcaggtttt aaatacatta aaatatttta tcccattatt
      121 tgttttgacc aattgaccac aatattaaaa attcaatcat ggagcagctg acaagtgcag
      181 ttgcctaatt ttatttaagg gttctttcca tttttccatc ctgttaacgc tgctgcctgt
      241 gcccagacag taatgggctt cttgtatgcc cacgactgtt atgatcatgt aaatttattg
      301 gtgcttagaa gaagcgagct attaaaacat tacaacaacc attacagcca ggctcgtgtt
      361 ggctttcgct cccaatgaac atatgcttcc gagtgaatgc ctaaactctt atttatggat
      421 ttaatttaat atgcggaaag aattcaaaat taaattttgt gtctgcctcc agagagtgtc
      481 agtgtataat aacatggtaa tttttacaca tctttatgag aaatgggaaa attaattctt
      541 tctgacaagt tgtaattatt cgacttggaa cagttgcagc tgagcagttt gcatgcctgt
      601 tgtctgttat tgcacagtgc aaggggaaaa cgtggggatg gagatatatt gtgtgtctga
      661 gagtttctaa tagctgacat tttagccctg catattatca gggtgctctt taaaggagtg
      721 gggactgt
//
LOCUS       KCLJ01003698             676 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 412521cal ultra-conserved element locus
            uce-5404, sequence.
ACCESSION   KCLJ01003698
VERSION     KCLJ01003698.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 676)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 676)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..676
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="412521cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>676
                     /note="ultra-conserved element locus uce-5404"
BASE COUNT          179 a          154 c          146 g          197 t
ORIGIN      
        1 cttcccacaa aggagctgca agtattcctc tgcaccacaa aaaggacctg ccaatgggtc
       61 taggacagaa agagttaaac tcagacgagc agtagctcca acacagttaa tccatataaa
      121 gctcatggat ttctctgcag tgatctttgt ggttgtcatt tgcattttcc ttttgtgaaa
      181 tcttttcttc tttcctttta cactcgtatg catgcagaaa ttagcatatt gtaccgagag
      241 tgggagatgt aagaagccga ccccctgctg ttcagcggat tgtgcaatct gcaggcggca
      301 tcaatttttc agcagttttc tcatttctca ttacagtcag ggcaccgcac agctcccgat
      361 tcaacacaat ccctagtggt cctacagaca agcatatggg ctgtcgaata gccgtactgc
      421 tactttcata gcattaatat ccttgtttat gcttccaccg taattaatcc tggtattaat
      481 atagtttggg cttagcttta ctaattatgt atgggctagc aggataatta tgtcagcaga
      541 ctccggcgct gatacttgac agcagtttgc taaccctagg agctgcacat aaacactttg
      601 gctgatcctg ccttggaagg agggcaaaga gaggaggagg ctgtacatgg cgactcgatg
      661 tctgatacct ataaat
//
LOCUS       KCLJ01003699             616 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 412633cal ultra-conserved element locus
            uce-6748, sequence.
ACCESSION   KCLJ01003699
VERSION     KCLJ01003699.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 616)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 616)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..616
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="412633cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>616
                     /note="ultra-conserved element locus uce-6748"
BASE COUNT          187 a          114 c          117 g          198 t
ORIGIN      
        1 cccccaggta cctgtgccag gtggtggatg gagcaacctg tgacgcaaac gcggttcgga
       61 aactcacggc gatgatcgac cggctttctc gcacgggttt ctcaagaagg tgggagcaga
      121 caacattatg atctaataaa ctttattttt taaaaatgac catttttcca ttgtctttcc
      181 taggaaatta aaccctttaa ttcatatcta ccctctacat aatggttatt gagtactcca
      241 caatatatta agtctagatg ttatggtaca tgcatacact ttcaggctgt tgattaccca
      301 ctgtcaccaa tacacataaa tggaaaaaag ctatgaaact gtatagggct gtatatatac
      361 ttgtctcagc ttcattagag caggaaattg ctgtgatttc cagcaggtta tgtaagtaat
      421 gtccaaaaaa aactatgaac agagtaaagt acaagactgt tttgaggaga ctttctactg
      481 tgtactttaa aacatagtaa aatttctttc acaaaactta gttacatggg tactttgttt
      541 tatagtgcat tatagtctag gaagtctcat taaaacactc ttttctttct tttgttaggg
      601 tggtttgagt acagac
//
LOCUS       KCLJ01003700             270 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 412738cal ultra-conserved element locus
            uce-7100, sequence.
ACCESSION   KCLJ01003700
VERSION     KCLJ01003700.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 270)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 270)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..270
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="412738cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>270
                     /note="ultra-conserved element locus uce-7100"
BASE COUNT           98 a           51 c           44 g           77 t
ORIGIN      
        1 gaagatcatc cagaatcaac ccagtaaaaa gaattgtcat aaaatctcac accattgact
       61 tgtaaatgga attgaatctg tggagtctac ataatgatcc tatcaaaaag ggaaagagct
      121 atcacattca tataacagat gagatatgaa atgactacta tggcagatga acaccccaga
      181 ggtattttgc tttattctac tcactgcgtt tatatctcca gtttctctaa ttttagttat
      241 cctcaggtct taagacaaga acagaaagac
//
LOCUS       KCLJ01003701             599 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 412838cal ultra-conserved element locus
            uce-930, sequence.
ACCESSION   KCLJ01003701
VERSION     KCLJ01003701.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 599)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 599)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..599
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="412838cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>599
                     /note="ultra-conserved element locus uce-930"
BASE COUNT          192 a          128 c          115 g          164 t
ORIGIN      
        1 ctacttcaca ttcccacact ggagttttct ttgcaggaag ttttaaacat tgcaaacaga
       61 aatgataaag acagtgcgac tggagaagaa cagcagtcag ttcactgcag gcagcctctc
      121 atacctctgg gccaaattaa aacctggtgt aaacagaagt caatcttcca gcaacagggg
      181 gattagcccc cagtcgcact agctttgact ttgctgcttg atgtttatat cactagagac
      241 caaagaatat acttgccaga caagaatagg aatcattaag tctgtggtcc aaagtgaggc
      301 gctgaaccat ctcaaagagt gaagcgtggt caaagttaca gggattggaa gagataaatt
      361 catccatgcc atgcttttga gctctatctg catctgttca tttatacata tagagaaaga
      421 caccatttag agagatataa gacattttag ttgacaaata aaaaaatata cagtatgaag
      481 catgaaagcc aagtatctcc tcttccctcc acggccatta agttttccct ttgcaggcta
      541 tacagtacat ttcacctccc attgtcaact tgcatcagtt atggactata ttatcgtat
//
LOCUS       KCLJ01003702             498 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 412946cal ultra-conserved element locus
            uce-2111, sequence.
ACCESSION   KCLJ01003702
VERSION     KCLJ01003702.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 498)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 498)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..498
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="412946cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>498
                     /note="ultra-conserved element locus uce-2111"
BASE COUNT          164 a           91 c           94 g          149 t
ORIGIN      
        1 tttttgcaaa gctgtcatat ggctggctta gatgaaactg gaaggctttt tgtgggtaac
       61 atttaacttt aaacattctt catggaaact tacatggcac ataatttaca tattcaatac
      121 cagtgacaat ttacttctcc catctgagca gggctttcaa ctatgccact tgaactaaat
      181 taataaacag taattagaga atgttgtgcg agcgagctgt tgatgttgag aagattctaa
      241 tcaacacctt cttttaaggg ccaattaaag ctgaatgtat gcaatataaa catcttcttg
      301 tatttagaca tgaactggtg aacaaggtaa aaatcagaac aattacagca ggttagagat
      361 gatccaatgg aaagatgaag ctttgaaaac agcagtaatt tctgaaaacc aatggccacc
      421 ttccatggag aagcactgac aacttgtgca agttacctca atgctttcac tgtcaggctt
      481 ttctctgaaa gcagctct
//
LOCUS       KCLJ01003703             701 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 413050cal ultra-conserved element locus
            uce-2043, sequence.
ACCESSION   KCLJ01003703
VERSION     KCLJ01003703.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 701)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 701)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..701
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="413050cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>701
                     /note="ultra-conserved element locus uce-2043"
BASE COUNT          238 a          106 c          122 g          235 t
ORIGIN      
        1 cttctgaatt aatttctgta ggagacaata tggatgcaat gtttttaaag cttaatttag
       61 attcaaatta atgtgaagac aagctccttg agtcacctag tctttctctg tggaatcatt
      121 tctaattgaa tgttaagatc aaagtttaag tttataagaa agaaaaacaa gtgcagataa
      181 atagttatta tctgacatcc ttatgaaaat tcatgacctg ccgctttatc agagaccttt
      241 taagaattct aattgtgaag tatgcataac tattaaatgg ctagagcgct tcagtctctt
      301 gataagaagt gagttaaata attgtcctgt ttaacttgtg cttgttaacc tttaaggtca
      361 actagtttga acatacgttt aatgaaatcc tggagccaga atttatgata ctgctgctga
      421 atgttaaatt ggacaattta cataagcagg acattaacct tctgagcact aaatagcatt
      481 ttagcactta gccgctgggg acaataaggg acatgttcta tatatttgtg attagcttgc
      541 ctggaaactc tcatgatgac caattggcct accaagttta gcagcataat taaatgaatg
      601 gactcagcct aagtaaatta tcagtgctgt gtacagtata tcattatagt cctaaggaaa
      661 aaaaagatat gaataattta atattacatt actaatttat c
//
LOCUS       KCLJ01003704             506 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 413159cal ultra-conserved element locus
            uce-2300, sequence.
ACCESSION   KCLJ01003704
VERSION     KCLJ01003704.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 506)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 506)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..506
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="413159cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>506
                     /note="ultra-conserved element locus uce-2300"
BASE COUNT          153 a           97 c           95 g          161 t
ORIGIN      
        1 tttaaaattt ggattgatct catattaatc ttcactacac ttaaaagatt gtctcaacat
       61 ccaagtgaaa atgattcttt tttcagtgca tactagagtg acttccccga tcacatcagc
      121 ctgaattgta tttttgtgag gctcttcaac aggcagccaa attttttccc tgctgcatgg
      181 tttgctgttt gcttaagcaa aaatccaatt tctggagaag actccacaag ggctaaattc
      241 cctgccattt acaagtgtcc cattagagta gctttctata tggaaataac agcccaagaa
      301 aaggagagaa ggagtaggtc tgaggtccac tcttcctgat gtgttttatt atttctttga
      361 agactaaagc tgtgctccca tagtaatatt ggaatacaaa tgtctcgaaa tggagcttct
      421 ttaaaagtaa agtatgtacc aaggacaagg ggagacctga cagcttcaga ctcaagctgt
      481 cttcctttaa aaggttttta attaga
//
LOCUS       KCLJ01003705             636 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 413262cal ultra-conserved element locus
            uce-5531, sequence.
ACCESSION   KCLJ01003705
VERSION     KCLJ01003705.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 636)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 636)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..636
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="413262cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>636
                     /note="ultra-conserved element locus uce-5531"
BASE COUNT          190 a          119 c          113 g          214 t
ORIGIN      
        1 tttttcacca tggatgtagc ctgaatatcc taatttatga ccatctggtc tccagtaaag
       61 cagcccatat gaccattccc taggtcagct aatagtcttc tgtaaaaagc cataaacacc
      121 tccaagggaa ctacccttcc cctacccctt gtataacaca cccagcaggg ccagtcatta
      181 tatctgttta ttcagtggtg tttggtaatg gtaacgttca tttcatttag gatttgattt
      241 gtttacgaac taataaatat gatttataaa aagtgcgtgt ggttcactaa ttactgcaca
      301 tatggcgttt tcattttgta aaactggcat ttgctttcta ttatgattac gtctctgttc
      361 accagtgcta attagtttga ttagacagat aactttaacc attattagga ctagattagg
      421 ggaactttgc atgcagggga atgcagggtg gaagagttca tcaccagtga agataggtca
      481 gcaacacaga gattgctcct cattaaatat tttaaaatta gtttttgttt tgtttgccac
      541 atagaagaac tgagaagcat tcacatttag ctacttacaa aaatccaatt aaacacagtt
      601 gtttagcatg aatttgttaa tcagagttaa tctttc
//
LOCUS       KCLJ01003706             571 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 413367cal ultra-conserved element locus
            uce-5982, sequence.
ACCESSION   KCLJ01003706
VERSION     KCLJ01003706.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 571)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 571)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..571
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="413367cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>571
                     /note="ultra-conserved element locus uce-5982"
BASE COUNT          194 a          122 c          104 g          151 t
ORIGIN      
        1 ttcaactttt acacatataa aagggagtct agaacgacaa ttttcactgc acctagtaca
       61 aggcaggata atatcatcta ccatcctttc cctcttgtac tacctagatc ttaatttgag
      121 agaaatttca tgtcacatgc gtccccaaag caagaggatc ttttgatgat atactgatca
      181 attaaaaatg ccttgttttc aagtttccta agataacaaa catgaatttc agtagatatc
      241 agatgaatgc atgacaacca tctaaccagc ctgcagattt aggaatccac atgtaggctg
      301 agaagatgcc tgctcacaca cacacacgat gctaaagaaa ttactagagc agcattgata
      361 cagtgctcat tctgttttgg cagaagcttg gaaatacctt aaatacaagt gctttaattt
      421 actcagcaga cacggtagga accaggctgt gttaacatgg acacatgcca gggaacaccg
      481 gcctcaatga cagatctgag acacagaaga gctcagagat ttcataatga aattctgcag
      541 tgactattca caattacagg ctcagatgca a
//
LOCUS       KCLJ01003707             757 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 413472cal ultra-conserved element locus
            uce-518, sequence.
ACCESSION   KCLJ01003707
VERSION     KCLJ01003707.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 757)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 757)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..757
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="413472cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>757
                     /note="ultra-conserved element locus uce-518"
BASE COUNT          234 a          158 c          123 g          242 t
ORIGIN      
        1 tgggacaaga gaggtcatca gtagctgtgc atcatctgtt ttgcatccac ttagcaatga
       61 gattcctaaa ctcattacca gtaacttctg ctggaaaata tctataaata aaataaaaat
      121 acagctatct gtaaaatgta tttgccataa aaacagataa aacaaaaagc ttggtaaaaa
      181 atgaacagta aatatgccag cttccataaa atattatata ccacagctct cttaatccta
      241 ttctcttact ccaaagacag cagtacattt ttttccatgg ggtcttcctt atccccaaaa
      301 cacatctgtc ttgagtttct ctcagatttg tcaggtggat cagtgctccc cagggcctgc
      361 tccatctgaa gtattttaat ttgactaaac acctgattta ttttatctct ccgatgagaa
      421 aggcagtttg tcttaataga gcctgtcagc ccacagtccc attcacagca atttacaggc
      481 agccagggat gctggaaaag aagagtgctg tgattctgta ttttatcctc ctccagaaag
      541 cacctaaaag cagctattca ctgctactgc atgtggcatt ttagaactga attagctttt
      601 tattcaagta actacacttg ttgtgaatag cttatctgta aaattgctac attcactact
      661 gattttatta acctttggct ctatcacaaa atggtcttca gttaggaaag acctttaaaa
      721 ttgacacatt tttcttaggg gcctttattt cagtgac
//
LOCUS       KCLJ01003708             637 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 413582cal ultra-conserved element locus
            uce-1417, sequence.
ACCESSION   KCLJ01003708
VERSION     KCLJ01003708.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 637)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 637)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..637
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="413582cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>637
                     /note="ultra-conserved element locus uce-1417"
BASE COUNT          214 a          113 c          135 g          175 t
ORIGIN      
        1 ctactgcagg atcacagcgc atcatcagaa gagcagaacg ctgcaatcca aacaaagaag
       61 aaaaaaggaa aaaaatgaac aaccggaaga gttagaagct tttactatta actatctcca
      121 attatttctt tttttaattt acttttactt tatttctttg aaagaatttg tggctaatag
      181 tataaaatat tcttacatta cttgcttgta attaaatatt ttaagctgtt tctgaagcca
      241 caagacagaa gattcaggca tggaggcaaa tggttttgct gtggcagtta caaacccgtt
      301 accatatttc tcatcatgtg acttttcggt gcgttccttg ctggaagagg aggaggaggt
      361 gtgtgtctgc cctagatcca ggcctcgagc tcccttcagc gaggcacctt acgcatggaa
      421 taggaggttt cacccacctg aaaccttcta aatacaatat cagtggtgaa aaaccaaaaa
      481 caagagagaa aataaaacaa gatcattagt aagagttcaa caaagcaatt gcattttttt
      541 ggatatgtct taacacatgg gaatgaggat aatctgtctg taacaaggga gacatgcaga
      601 agggagaggg ttaatcgggc aattgcatac agcaggg
//
LOCUS       KCLJ01003709             623 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 413692cal ultra-conserved element locus
            uce-2869, sequence.
ACCESSION   KCLJ01003709
VERSION     KCLJ01003709.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 623)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 623)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..623
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="413692cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>623
                     /note="ultra-conserved element locus uce-2869"
BASE COUNT          169 a          139 c          127 g          188 t
ORIGIN      
        1 tttcctgctc tgccctccct aagatcattt aaagggatgg ctgttttgcc aaaccagaga
       61 gcctcagaaa ttgagggaga atcatgcacc tatgtgcaga tgcccccaac ggtgatgaga
      121 agcactagct ttctctggtg ctttgaagca ggttcccaaa gagagatatt taatcaaatt
      181 tatgtttatt tcaggcttac cctctctaga tccatccaac agctctacaa cttcttcttc
      241 aggtcctttg acaggctttt cagcaaacat acaaggagca cgggtttacc ttcaagggcc
      301 agcgcctgtt gggactccca gctttaacag acagcatttt tcaccacatc cttggacaag
      361 cgcaacaaat tcatgtagga acttcatggg tctgtcttag ttaactataa attcatagct
      421 atttagtaga tttctaactt gaaatgcaca aaatgctttc caattgcttt tagcagctgt
      481 gaggatggtg tgcaaatccc aagctgtgct attttatcca ctagttctgg ttgtaggctc
      541 tgtgattaca ccaagctaaa gatgcccctc atagtatgag tgcaataata ggtgaaaatg
      601 tcatgtttgc catggtttga agt
//
LOCUS       KCLJ01003710             793 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 413799cal ultra-conserved element locus
            uce-511, sequence.
ACCESSION   KCLJ01003710
VERSION     KCLJ01003710.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 793)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 793)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..793
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="413799cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>793
                     /note="ultra-conserved element locus uce-511"
BASE COUNT          245 a          157 c          157 g          234 t
ORIGIN      
        1 tatatttcac atactttaat ttggctgaca cataaaactc atttgacatt ttgcaggtat
       61 ttctttgaaa ggatatttgg ttcttgttga gcgttaaggt atggaggtgg ggtaacctgg
      121 gtaacagaag gtcatttcca agtagattgt tgtccaagat cagttcttcc aagtaactga
      181 atgtttttag tccttctagt gacctgcaaa cgacaaaggc aacaggaaaa atgatactcc
      241 actaaatcag ggaggccatt atgagctgaa ataaatattt taaccttccc tttcaggagt
      301 gggaatagtt ttggtttggg cctgtcagaa gagtgaatga caagcattag tggcaagggg
      361 agtgctggca ctgcaacaca tccttcacat gctggcagga tgaaggatgc gggtcactta
      421 gtgagtagcc aggatccaaa acaaaaggct tcagatatgg ggcctgcagg atgaatttgt
      481 caatgtcttg tgccttcagg cacccagcct cgcctgaccc taacctccat tcccaagata
      541 aataactctg tcacagttca ccttcattcc ctggacacaa atttaagttg tcatccatca
      601 tttctgccaa gaaatatcat accctgctaa caataataaa tacaacttca agtatcattt
      661 cttagtagtt accttattag gaaatgtaga cactttttat taacctctta attagcttct
      721 tgagttcatg caaacaaaat aaaatgttct ctacaaaata aaatgcagaa ttactcctga
      781 cagaagaggc att
//
LOCUS       KCLJ01003711             502 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 413912cal ultra-conserved element locus
            uce-2968, sequence.
ACCESSION   KCLJ01003711
VERSION     KCLJ01003711.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 502)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 502)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..502
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="413912cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>502
                     /note="ultra-conserved element locus uce-2968"
BASE COUNT          116 a          160 c          111 g          115 t
ORIGIN      
        1 gggatgtgtc actggagccc agcagcccca gcacagtgcc attagggatg ctctccaaag
       61 cgtgacagag ccagcctggg gtcaggctgc ctctcagcct tgcccagcaa ggagttggct
      121 ccttctttcc tctcccaacc catgtttgat taataaatca tgcagtttgc ccaagactcc
      181 ctccgtcccc acccaaatac aaacattccc cgtcaccacc accttgcgcc tggcagagct
      241 gctccctctg acaatcaatt accctccgga gatgaaatta ttgtttaatg gcttttggaa
      301 caggctcctg ctctgacatt catcacaatc aataatgcat cagcggggac aaaagaaatt
      361 acctgcctcc tgctaagtga aagagtccat ttgtattcca cacggcccct tcacgcccac
      421 tgagccggct ggatcgtgct ggcggcaccg agggcgcctg aaccctgaaa acttggctgc
      481 aacttcatca ctggggctgc tt
//
LOCUS       KCLJ01003712             595 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 414014cal ultra-conserved element locus
            uce-4871, sequence.
ACCESSION   KCLJ01003712
VERSION     KCLJ01003712.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 595)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 595)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..595
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="414014cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>595
                     /note="ultra-conserved element locus uce-4871"
BASE COUNT          102 a          132 c          214 g          147 t
ORIGIN      
        1 gctcccaaaa tgctacaacg tgtctagtgt atgtctagtg tactctgtga aaggtttgaa
       61 ttcaagtctg agttctcgga gctgagcccc agttccgtgg cgcttgtacc atggaggcct
      121 gccatgccgg cattgctagc aagctgggaa agcattgcac tctggtccgg gctggcaaag
      181 tgcccttgat ccatggggtt agcctgggca gctaccagtc ctggatgtgg ggagctggtc
      241 tgcggggaga cgtggtgtgg agaaggctga ggctgcatcc gaggggatgg gctggaatga
      301 gggggctggg actggggccg cggtgagggt acaggctgtg gagaacgcac ttgattggtg
      361 agcgatgaag ggagctgctg gccctggagg tgcggggact gggcctgatt ggggagcatg
      421 tgctgttggg ggctcatagg attgggctga gctggggatc ccatctgctg ctgaagcagc
      481 ctttgctgga aagcctgttg caaactggct cctgtctctg cactcatggc ctgtggaagc
      541 tggcttattt gtcccatgtt tccttgctgc atctgctgca tgtgatgctg cattc
//
LOCUS       KCLJ01003713             633 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 414123cal ultra-conserved element locus
            uce-487, sequence.
ACCESSION   KCLJ01003713
VERSION     KCLJ01003713.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 633)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 633)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..633
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="414123cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>633
                     /note="ultra-conserved element locus uce-487"
BASE COUNT          218 a          106 c          105 g          204 t
ORIGIN      
        1 aaagaaggta aaatgactgg tttgttttct agttgagtac aagtttaagt gctaactagt
       61 atttcaaaca cttaccatga gatatcaaac agcatgtgct ttctatttat attggttacc
      121 aatctcaata ttcagaggaa gagtgtataa agttaacaag caattatttg gcaaattagt
      181 actcaacaac cctgagtaaa taggaagttt gaaacctatc tgttatacag ctactttaat
      241 ttgcatagca cactggtgtg tttgctttgc aaatactttg caatgaatca tcatttgtac
      301 tatacagtcc aaagaaaagc aatcaaaatt cacagcaaga caatgaaatt aattataact
      361 gttgaattct gtggtggtaa ttcctcctca tgcaggaaga ttaattgcat tgcactttcc
      421 ttgcactcca ctaaatgatc tgatgaatgt ataatcattt acagattttt caaatgctga
      481 aaattgatta cctttgatta gctctgatct gcacaaagag ctctgacaga gtatcagtga
      541 aacattacaa cattacagac aaagtaacaa atgatttaat taccagtgtg cttattaatg
      601 ttagattccc tgcagtgatc ctggcaaatc agg
//
LOCUS       KCLJ01003714             639 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 414233cal ultra-conserved element locus
            uce-2302, sequence.
ACCESSION   KCLJ01003714
VERSION     KCLJ01003714.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 639)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 639)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..639
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="414233cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>639
                     /note="ultra-conserved element locus uce-2302"
BASE COUNT          194 a          107 c          116 g          222 t
ORIGIN      
        1 ttgagtttgg acgtaaatag atgctattta acttctttta caatattaaa ataaattcgt
       61 tttctttaag aacatatatc ccaggtctac atgggatttc tattcataaa tttgcctcct
      121 taggccaaag atcaaaaatt agtgatggtc cacaatatgt agagcttttg tcacattctt
      181 tcattttcag cataagaaat gggcaacttg ttcagggcaa atacttgttt gaactgagga
      241 ttttattatt aatctctgaa gactgctgaa tttagggtca cagtaagggt tgattaggta
      301 caaggtgcac aaagctctcc tctgtcaatg ctattgaatg aagcaagtaa tttagattca
      361 gaattggtct tggattgaag ctcactccat taccgaccat tttcaatttc agctatacaa
      421 taaacatcaa gctcagcaag gaaattagta catttggtaa tgtattggga gagatgggtg
      481 ggtctctgac aagatgacac ttatcaccaa agcttcagtt aatgaaaccc ttgagtggtt
      541 tctgcgtttg acatattttg acattttttg aaatcacatc cagctttttt taccccacaa
      601 tgttgttctt tatgagatct atctttaaaa tgagtactg
//
LOCUS       KCLJ01003715             631 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 414341cal ultra-conserved element locus
            uce-5766, sequence.
ACCESSION   KCLJ01003715
VERSION     KCLJ01003715.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 631)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 631)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..631
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="414341cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>631
                     /note="ultra-conserved element locus uce-5766"
BASE COUNT          165 a          137 c          136 g          193 t
ORIGIN      
        1 caaggtccat ttgcagccat ataattgctg tcagctaatg cctgataaac cctgcctaaa
       61 ttgggatata tctattttat tatatatcta tatttactct gacaaaagtt ggacaaactt
      121 gtccaaaaga ctaggggtcc attttatgtg cttgggtgtc caagcacctg ccagctgttt
      181 gtcccttgaa ttgaggacat catgttttca atttccttca ataaagctat gaatctggca
      241 atttgctggc ctgcttcagc taaacagaaa ggacaatttg agaaagatca tagttcaggc
      301 tcagtcagac ggaaacgatt gaaaacagag agctggctgc tatgtttccc caatgcagct
      361 tgctgtcgca gtttgactga caaactgact tttttgaggt gctcatgccc atttcagtca
      421 gagtttattg aaggtgattt tgatcttctc catgaggcca cagcagcggc catgccatct
      481 gtcaccttga ttgcatcgtg gattctctgg agagagtgcg atggctcctg atcatttaca
      541 gattgtgctg ctttcgcctc cataaggacc acatgcacag agccagatgg tgaacataca
      601 cgcttattat aagtctttat ctctgtgcag g
//
LOCUS       KCLJ01003716             694 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 414451cal ultra-conserved element locus
            uce-1816, sequence.
ACCESSION   KCLJ01003716
VERSION     KCLJ01003716.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 694)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 694)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..694
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="414451cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>694
                     /note="ultra-conserved element locus uce-1816"
BASE COUNT          154 a          205 c          146 g          189 t
ORIGIN      
        1 ttagaaacca gcaagctttt gttaccaatt tcttcctcct tctcccctgc gagccctcgg
       61 agacaaaaca gggagcaaca aggtcctggt ccaaggggct ctccatcctc gaaatggatt
      121 ttacctgtct ctgaaagctg cctccatccc ccatagcttt ctccctaggg aaatcagcct
      181 aaaaggggct aatggaacaa tgtccctctc tctccctctc attttctctc ttttttttat
      241 tagcatttgt ggaatttatt cccaaactct cctaatcttt cgtacacaac catttgattt
      301 gcataaccca gccccctctc ataaaaactg gctgctagtt taattaaaaa atgtaaattt
      361 gctgtcatct cggggcctag tgaattagga cgacatcggc attttttatt gctgaagacg
      421 tccaaattga tccagtccgc actgaaccgg aggggaggag acggtgccgc gtgggacttt
      481 tggctggagc ttctgcccct cccctgcttc cagccaagcc tcctctgccc cctctttgct
      541 ttgcaaagtg cagctgagga cgaggacatt ggttctccca aacctcagct ggatcggcga
      601 gcacggcccc tgcactgtca gcacttctgg gagctgagcc ctgggtggca cctgagctct
      661 ccaaaccttg ggaacggctg catcttcaaa ccct
//
LOCUS       KCLJ01003717             811 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 414561cal ultra-conserved element locus
            uce-5638, sequence.
ACCESSION   KCLJ01003717
VERSION     KCLJ01003717.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 811)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 811)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..811
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="414561cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>811
                     /note="ultra-conserved element locus uce-5638"
BASE COUNT          241 a          144 c          167 g          259 t
ORIGIN      
        1 aattgggaga gaggaggagt gaaatcacat ctcctgaatg tctacatcag agaatgttat
       61 tgagtcatga aactactaga gcacaagaca tggtgtaact tcaatcccag ctttttagtt
      121 tattcaaatg aaggaccctc aaaaggttta gttaggaatt aagttaattg ggtttggtgt
      181 aaggttggtc tacttcctgc tggaaagttt cccatatttc ctcagtataa gtagcggctg
      241 gactcccatg tcaccctgtt agcccagact ttaattagtt ctggcattcg cctcataatg
      301 ataaatgctg agatgatgaa tggaaatgca aatgagtgtg aagtggctca gccatcagtg
      361 ctgaatatca ttaatacctt cctactgtta aatcgatcaa tgtcatccca ggatccctct
      421 gttcagcggg tgcagatggc tgtccgccag aatgccttcc attatattgg cagtgaaaac
      481 tttgtgggtt tttcctcccc atatgctttt attcatcttt tgctgaatat ttgtttggca
      541 actagaactc taatatattt ccagctgaga tgataactat ttagggtcaa taagcgagta
      601 gctaatttag agcaaaataa atatgaatat gggtctcttc tcacatcagg agagaaatat
      661 caagtgcata ttcaataaat tggagagcag tagaattttt cgaggtgcaa aatttcatgt
      721 tgtagcaaca aaattagtca tgtctcagat gtgttgctct ttgtatttta caaagtttgt
      781 cagcatgtcc acagaactaa tttcataaga a
//
LOCUS       KCLJ01003718             431 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 414671cal ultra-conserved element locus
            uce-4778, sequence.
ACCESSION   KCLJ01003718
VERSION     KCLJ01003718.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 431)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 431)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..431
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="414671cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>431
                     /note="ultra-conserved element locus uce-4778"
BASE COUNT          123 a          112 c           86 g          110 t
ORIGIN      
        1 ggcagagccg gggttcgcag ccgtggccgt gaaccttaaa caaacttcca gcagcatttc
       61 cgcctgacat ttttctttat gtttcgtcag tcatatctga gcgatcagac agccgccaca
      121 cgtggtacac ccaccaggat tattatctcg agcagaggcc cagagctcat tgtagcaggc
      181 atgtaattct ttacaatgta tgccacgtta agtgtgttgg gttatctatt caacagctga
      241 ctgagccagc tctcctcaac aaccatgtaa gaagcgatga caattgtact acttcataag
      301 ggctgcatgc aactctgaca cacacttcac agcaaccagt catctatata aaccaatttc
      361 aagagcaaaa ttgcatggtg cctccactct gttataaaca caatgatatc cactcagagc
      421 tgataaatgc g
//
LOCUS       KCLJ01003719             616 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 414780cal ultra-conserved element locus
            uce-7587, sequence.
ACCESSION   KCLJ01003719
VERSION     KCLJ01003719.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 616)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 616)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..616
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="414780cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>616
                     /note="ultra-conserved element locus uce-7587"
BASE COUNT          146 a          169 c          163 g          138 t
ORIGIN      
        1 tttctcccat ggcttttcct ggataacggg gctgatggag tcagcatctc accagcaagt
       61 cggcagcaga acaccgggct caggctgcag caccaagagc aggagctgtg cagccttccc
      121 ctcagcaaat atttatgctt gaagctttct ctctgaaagg cctaattgga gtctaggtga
      181 gctggcacac tagagcagag cctaatagag acattgcagt gctattagca cagatggttg
      241 tcatatgtat gcaaatgagg agcaaattga atttggtgtc ccctctcacc agctgtccta
      301 tcagcactgg ctcctgcagc agcacgaggc gctgccactg ctctgctaat ctgtcatcgc
      361 agattaatta caaccaacac attaatcttc atttgtttcc ccacacaaag gaaccctgtg
      421 ctttcaagtg cgctctgatg ggatgggtgc tccaacctgg gaaaagagga aagaaaggga
      481 aggagggcca ggcagcttca ttagtgccag ccccgggggc tggggctgct gcagcctgag
      541 cgcggctttc gtgctccttc tggcaaacca gaccccacta cggggagcct cagccacctg
      601 cctgcagctc ctggga
//
LOCUS       KCLJ01003720             382 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 414889cal ultra-conserved element locus
            uce-2715, sequence.
ACCESSION   KCLJ01003720
VERSION     KCLJ01003720.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 382)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 382)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..382
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="414889cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>382
                     /note="ultra-conserved element locus uce-2715"
BASE COUNT          116 a           73 c           60 g          133 t
ORIGIN      
        1 cattacccca gcataaaaaa gtgagctggc atcagagatt tagctttcac tctgaatttc
       61 ctgggttttt caagctcaaa caagaccctt aatgttgctt taatgtagtt ttggtggtat
      121 aattcttctt aattctgtcc attgcagtcc tttgatactt tatgaattac ttatctcaca
      181 ttaataaggc ttaacatgga gtattaacct cctatacatt cctaattagt ttttaatgaa
      241 ttttagtttt cttgttagaa aaagagctag ctagctaact accacaaatt taatctccat
      301 tactggagca taagacaacc acccctgggg atgcatgtcc ttgagatttt caagaagctt
      361 tataaaagag tcaaagcagc tt
//
LOCUS       KCLJ01003721             650 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 415096cal ultra-conserved element locus
            uce-2387, sequence.
ACCESSION   KCLJ01003721
VERSION     KCLJ01003721.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 650)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 650)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..650
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="415096cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>650
                     /note="ultra-conserved element locus uce-2387"
BASE COUNT          205 a          120 c          125 g          200 t
ORIGIN      
        1 aggaaaagct tactctgtct gaatataacg agtaacaaga agtcttggtt gtattacact
       61 ttctaaatta agaagaaagg catctgctta cctgaaggag gatttttgtc ctaaaaattt
      121 accaatttcc aaagcttctt gtgtcctctg gagtccatag taacgtgaat tgtctttatc
      181 caagtaccta gcaaatcatt gtcacatagc agcagtcgac ctttcttttc aatcttttca
      241 ggagttataa atcagttgac tttcaagctc gatgagatgg catatgccct ggtttgaaga
      301 acagatggag gcttggggga aaattgtttc tgcaggctta ctacaagcag cactactcca
      361 taaaagtgaa ccattcacac taatttctca catacattat ataggcaggg agcaccagcc
      421 cattcagcag ccttcatcta gctttcagag gtcatttagc aaatttaaat taaagttatt
      481 tctgatacat ggctgagttt tcattccata cactttcaag agatggcaaa taaaggaatg
      541 gcttaaattg tatatttggg ggaatagtaa attaactggc acaacattac tgttttctag
      601 aatcctggga tgagatgcaa ctattaatta gctacagagg agtcactgaa
//
LOCUS       KCLJ01003722             736 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 415208cal ultra-conserved element locus
            uce-419, sequence.
ACCESSION   KCLJ01003722
VERSION     KCLJ01003722.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 736)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 736)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..736
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="415208cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>736
                     /note="ultra-conserved element locus uce-419"
BASE COUNT          214 a          141 c          139 g          242 t
ORIGIN      
        1 tatactgtta tccatattac gttgtttctt atagattttt taaaaaaaat gtgaaatttt
       61 tccacactat gtgtgttgtt tccatagctc ttcacttcct ccagaagcct ccttacatta
      121 aaaaagaagc cttacactta tcctgcaaat gacagaaagg gcttatttgc aggattttta
      181 gagcattaaa ataactatgt caggcagaag aatctttctt ctatcctagg atttcagcca
      241 tgcgcagtct ttcttccctt tctctgcccc atctctcttt ctagcctggg gcatgaattt
      301 gcatgtctaa ttcatttact caccatattt gaattggcct gaacagatgt aaatcgggaa
      361 ggatgggaaa aactgaagtc atcaacaatg attaatcagc tgttgcaggc agtgtcttaa
      421 ggagactggt aggaggaagc atggaaacgg aaaggcagtg tatttgaagc ctaattgtca
      481 catcagagca tccttgtccc catgcaacca ccaccttgta catcacttcc tgttttatgc
      541 agctcaaaac atggactgaa gatttttaat atgttgactt tctttctggg caagacatcg
      601 gtcatgtgtg caccatagtc ccatcatgga gcatttatgt atacattgta aataaatttt
      661 gtgcaaaaag gactggaaaa atgatctgta ttattgcaat tttttgtaaa agtagcagtt
      721 tggtatgagt tggcat
//
LOCUS       KCLJ01003723             753 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 415319cal ultra-conserved element locus
            uce-183, sequence.
ACCESSION   KCLJ01003723
VERSION     KCLJ01003723.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 753)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 753)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..753
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="415319cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>753
                     /note="ultra-conserved element locus uce-183"
BASE COUNT          244 a          140 c          141 g          228 t
ORIGIN      
        1 tttgaaagtg caattttcca tctgtcaatc agcccctcaa ggtccccagc caccaagcgg
       61 ggaggctcca ggcgaggtca cccctgtctc ctgccttcca tctgatgggg cacccggcct
      121 cattaatcaa gatcctgctc aaagtttggg ttggggaggg tggctcgagg aatattttat
      181 cgccttttgg gtgctatcga taatttatat tctgaattaa aataaatagt ctccttttaa
      241 atagaatttg attagatgac tacaaaatct atttctcttg ttatggtaca tagcagatca
      301 tttcctagag cctgcctcag aagaaaatgt gtggtatttc tggcattaat aatgtatggt
      361 caccaaaacc cattctggcc atagcttcga gatgcttcaa aatacagcca attaaggttt
      421 atttaattat taaggttgaa taaataacag cgaaacatgt taaaaatctt tcagtttcag
      481 tcaatcataa taaaaaatta atgagactgg atagagagcc ataaaaactg atagactgca
      541 atcgtgaatt ataaattggt attgattttt tcctttgcaa taacactctc aggtaatcgt
      601 atgttgccac atgtaaagtg cactttcctg gttgagacta atattaacta tcaaatatat
      661 atgagatgga ggcatttatg acacttcaga tttcacaaac aaaaagaaaa aaaacacaat
      721 ttgtggaata atagcggcgc tgaacataga atc
//
LOCUS       KCLJ01003724             366 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 415430cal ultra-conserved element locus
            uce-2818, sequence.
ACCESSION   KCLJ01003724
VERSION     KCLJ01003724.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 366)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 366)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..366
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="415430cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>366
                     /note="ultra-conserved element locus uce-2818"
BASE COUNT           91 a           74 c           91 g          110 t
ORIGIN      
        1 cccatgctcc cgccgtggag ttgcagctgt gttcaccagt ccgtagtgtg tgatgatgaa
       61 attgttcatt gtgaatagaa tcaggattat aaactaattt ttaatagaag aagagaagaa
      121 aagtatatac ttaaaatgta tttatggctc agatgtactg taattcagat ttattgtacc
      181 gcttccttga tttttaacta tgcactgtaa tgaggcactt gccactcagc aaatgggggg
      241 tcagagcagt cacagagctg acattgcctc ccctgctggc aaactggggt gctcggtgct
      301 tgccccgggg tcacccactt tgctgtcaaa gccattcttt gttggtgggt ggtggacagc
      361 tttgca
//
LOCUS       KCLJ01003725             369 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 415533cal ultra-conserved element locus
            uce-1742, sequence.
ACCESSION   KCLJ01003725
VERSION     KCLJ01003725.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 369)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 369)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..369
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="415533cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>369
                     /note="ultra-conserved element locus uce-1742"
BASE COUNT          104 a           63 c           79 g          123 t
ORIGIN      
        1 tgtaatttta aagcaagttg tgttgcacct aattattttt tccatccctc ctgatattac
       61 cttaactgca aagctctgta gtttgcctgt catttttaat caggttgttt taggtaattt
      121 ttgttatgcc cctcattact gaattgttta tcaataggtg caccaagtgt cactagcttt
      181 tctcatcaag ccaggtctga caaagagctg cagtgcatgg gaaagaggca gctaggtgaa
      241 actaatgcca tagatgtttg attcattagg agcttattgt taacggggat gtctgattgt
      301 aaaggctcag tcaagcaaaa gagtgcagag taatcagtcg gatttatagt ttgcagggct
      361 caaaaaaaa
//
LOCUS       KCLJ01003726             425 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 415749cal ultra-conserved element locus
            uce-4025, sequence.
ACCESSION   KCLJ01003726
VERSION     KCLJ01003726.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 425)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 425)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..425
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="415749cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>425
                     /note="ultra-conserved element locus uce-4025"
BASE COUNT          145 a           65 c           89 g          126 t
ORIGIN      
        1 aaaaaaaatc agggttcggc ttattagttt tctcttcgct gcttcttata aaggtttatt
       61 tgacagagca taagatagtg gtaaaatcct aaggtaaagg ttaaactctg ttttattatg
      121 tttacaggat ttaaagggta aatcaggaag tgcttattta acatcaagtg aaagtggtgg
      181 attagtaacc agaccgagac ttaaaagcat ccttaatcct taagatctct gagggtgaaa
      241 ggtcactctt taacaccagg ttgtgtaaag aatgaagcag acagaagctt ctgtttcatc
      301 attgcccagt taatccactg aggaaatgag cagcattggt tttttgctag gtaaactcct
      361 cctaaaacca aggaaacaga ggaaagcctg aacaggaaat aattaaagta ggtttatttc
      421 atgaa
//
LOCUS       KCLJ01003727            1094 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 415860cal ultra-conserved element locus
            uce-436, sequence.
ACCESSION   KCLJ01003727
VERSION     KCLJ01003727.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 1094)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1094)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1094
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="415860cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>1094
                     /note="ultra-conserved element locus uce-436"
BASE COUNT          354 a          193 c          169 g          378 t
ORIGIN      
        1 agcccttgtc tacatgtgga tacataacac atttgaaatg tgtaaggcat aaagattgag
       61 ggtttaaacc ctcagtttat cagctctaca ggcccaattt tgcaatcagc taaacctaca
      121 gtacattttc atcaagtgct gcaaatcagc aaaatattaa atgaatcttg aaaaaatgat
      181 tatgaatcca cagttctgtt tgactgtata attctattta agattaaaat tactatcata
      241 aaaaggccac tttctgaatg taattccaca aaaacatcat cacaaaagct tttactgcta
      301 tttatgtcag aatgtatttt aaacagttct aatcatttac ctttgtggac acttaattaa
      361 aattacaaaa ccaattttaa tctgtagtcc aattaatatg caaatatatg caaatgtggt
      421 aaatcaaggt ggtgattaag ttaaggacac tctatttcat gtctgcttta agtgtgaaaa
      481 caaacaatct tttttgtaat tgtactgatg gattgtgatg tttatagggt tagtatgggg
      541 tacaaatgtt tatgcatcaa cattatgcca aaacaaagat tttatactct ggagtgattt
      601 agcatccagc atacattcag atgtaacaaa gtcattttgc agtcatcttg tgaattagaa
      661 taaggtcaaa gcaaagttaa atttctatgt catccatttg tatggctatt taaaattcaa
      721 caatcacttt ctgatgtgtt aggtaagagc caagaagtct caagaatggc atattatcac
      781 cctttatcat ttagtgttca taatacactg gtttatcttt gatactatta cagaaatagt
      841 tctcccatta aggtgcaaag atattcatcc tttttaaccc tttttcctcc gtaagttcca
      901 atttctcaaa aaggttgctc taccagtgag ggtttctcta cagatatgta tattcactaa
      961 gaactggcga agattttggc agctgctttt caccccttcc tcactgctga tttagacaga
     1021 tgctccttcc catttgccca tagaaaagtc tatctgttgc tctttgtggg aataaatctg
     1081 aattcctcca ttta
//
LOCUS       KCLJ01003728             736 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 415971cal ultra-conserved element locus
            uce-3959, sequence.
ACCESSION   KCLJ01003728
VERSION     KCLJ01003728.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 736)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 736)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..736
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="415971cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>736
                     /note="ultra-conserved element locus uce-3959"
BASE COUNT          244 a          109 c          136 g          247 t
ORIGIN      
        1 atcaacataa tggatttgaa gttgcagagt ttataaataa aacgcttgca tatcctgaaa
       61 tgcaaatatt tattctgtgc atgtataatt ataatatgcc catgatagct gataattttc
      121 tgattgtcta tagtctcatt taagtcatat ttattctctt gcatccatgg tcttcattca
      181 acactggaca tcttactgag ctgtagtaca ggggtttttt tggttttaac cttcaaagga
      241 atttagttga gcagatgcta cattgaacta gtcagagtag aaaggaaatg atacagcttt
      301 taaagggcac atctagcata tctactgggc taaagtaatt ctggcaatgc ttcaaaggat
      361 ataacttttg atggtaaagt aggtaggcta cagaatgaaa tcacatatgg caagctgtca
      421 aagtcttcct acacattcag tacatttata taagtgcaaa tggatgctgc ttagatggag
      481 tccctagcaa tttcctgtta aatctgctct aagattatct gatattattt gactaaatta
      541 tctgtaaaag ctgaggacaa cttttatgat caaatattta gaaattagct ttttggcaga
      601 ttatctgaaa aatgaactgc aattgtatta acacttgaaa gcaaagggct ttcagtaata
      661 gcaattatat caaaacaggg ataatgaatt gctgtatatc agcttgaaga ggacgtattt
      721 ataggtcaat gatgtc
//
LOCUS       KCLJ01003729             731 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 416084cal ultra-conserved element locus
            uce-853, sequence.
ACCESSION   KCLJ01003729
VERSION     KCLJ01003729.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 731)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 731)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..731
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="416084cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>731
                     /note="ultra-conserved element locus uce-853"
BASE COUNT          236 a          117 c          119 g          259 t
ORIGIN      
        1 taacaaacta aatttggaat tacttgtttt ctagctttaa atgcctgctt tatttctttt
       61 tcaagagatg cctaaaatgt ttttatataa aaatgaaccc aagcctgttt taagattttt
      121 tgtgtaagac tttaaaagtt gtattaataa cttctggttg ttaaataata taaaagttaa
      181 caaactaaac tgttacatga atcatggtta gtatccacta atgatgttaa tggaaaaaaa
      241 tgctttagaa caataaatgg attttaaact atcctttaag cttgatcttg ctaaacacaa
      301 actctgattg acttgtttgt attagcatgt ctctcgtgag aatgtaatgg agtttaaaga
      361 ggtaagaata ccacttacca ctgttagact gtctaaatgc tagttcttca acctttgagt
      421 ttccccgcac attaaatatc ccattaagca ttgcatagat tcacctattt gttttcactc
      481 agaagagtgc gttgactgca tttttcgtag tatataacaa tttgtcttga taaacaaatc
      541 atcagtgtca ctgcccagct gttggtactc aacttcaaaa actttatttg taattttcag
      601 tgctaaatat caccgccctt gaaggcagtt tagagggctg atatttcttt tgagactatc
      661 agacttgatg gctgatgatt attaaggaaa tatgtcgcag gactcaaagg atgactaaac
      721 gttaaacagg t
//
LOCUS       KCLJ01003730             656 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 416194cal ultra-conserved element locus
            uce-181, sequence.
ACCESSION   KCLJ01003730
VERSION     KCLJ01003730.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 656)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 656)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..656
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="416194cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>656
                     /note="ultra-conserved element locus uce-181"
BASE COUNT          176 a          144 c          160 g          176 t
ORIGIN      
        1 tttctgcagc tattccatca gtggatggta attccctagt tgcagtggat ggcaatgcct
       61 actctctgaa gagcgtctga ggttctggca tgctggggtc accatttacc aggctgaagt
      121 tgctgcccag gttgcctggt gcttcactgt tagaattcag cgtgccagac ccacggcacc
      181 cctgtctttc atgaatggaa ttcaaaaaga cacttatatt tccataaata aattaggaat
      241 tcagtggctt cttccggcta atcagggcag gctgataaac cttgctagct gtttaataaa
      301 tgaattgtga ctgattacct attaatatgg acgcctcagg aattcaccct gggggaagca
      361 gagcagtgaa atagagaggg gcatggcccc ctgggaaatc agggcttcat gtttgcagct
      421 taaatatctc tgtgaagtat caataaggag gtaattgaat tttgaacaca aacatgagcg
      481 ccggatggat gaaggagagg ggggccctga tcatctcttc atgccccttc atactcccct
      541 ccccttcccc ttagagacca ctctagtgaa gatagatgct aaatccatta aataaagatt
      601 agactgtgtc gtggtagaaa atggcagctt agctagatcc ctgggcaaat tgggac
//
LOCUS       KCLJ01003731             618 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 416302cal ultra-conserved element locus
            uce-1484, sequence.
ACCESSION   KCLJ01003731
VERSION     KCLJ01003731.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 618)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 618)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..618
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="416302cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>618
                     /note="ultra-conserved element locus uce-1484"
BASE COUNT          187 a          129 c          109 g          193 t
ORIGIN      
        1 catagggtat gactcatatc tgcaaaccaa aaccaaagcc caaacttcgc agtttgggta
       61 tgaaaaggag atttgagtga gttgctgaaa aatatttcat caatatctta cttttacatt
      121 ctgaggcact gaaatgtaat tatgagaaat aaaataagga ttttcttagt tacaattcct
      181 ggcctttcac tgattgcagt aaattataaa ttatgcagtc aatgtaggcc aacaaaagaa
      241 gacatcttca aatctcagtc aaaggtaatt acttaagtcg gctgaatgtt cccttttcat
      301 agagtgtgat ctctctttga cagctcacac tgacagatga ccttctcagc gacgttctta
      361 tccttcggat catgagcagt gtgcctctct ccctgaatat ctctatatat ttgtgacact
      421 aagctttcaa atacagctat tgacaaatca gaacatcagt ctaagtgctg gtcttcctat
      481 cactcacaat aaagtagcta tcacttgtgg tgttgtagag caagcacatc tctgaaaaat
      541 gagttctcac caagtgctaa tttgacacag ctcgcttgcc ttcccataat tgctctgtca
      601 ttgtcagttg gcagttcg
//
LOCUS       KCLJ01003732             504 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 416410cal ultra-conserved element locus
            uce-2579, sequence.
ACCESSION   KCLJ01003732
VERSION     KCLJ01003732.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 504)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 504)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..504
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="416410cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>504
                     /note="ultra-conserved element locus uce-2579"
BASE COUNT          159 a           99 c           81 g          165 t
ORIGIN      
        1 cccatagccc tgaacttccc tttctgacat gttgggacca tggcatggga gtgatgggga
       61 gagagattat gacacagtaa cgaatacact tttcaatact ttatgaagct tgagcatgaa
      121 ggtctagaca taatgttcat atcaggaata ccacctgcat ctaactttct ttgaaatttt
      181 tgtttataat tccagtttga aatcaggaac atctacaacc ccaagcatca atgcccttca
      241 atatctaatt tcacagtttc ttaacacata tctcatgtta tttattatag tcagtgtcat
      301 cccaacacct ttgtctgttc ttgctacatt ttaaatggct tagctggcaa gccatcaatc
      361 ataaatcatg agacatattt taacttcaac taagatcagt ttagaaagaa aacaagtctt
      421 ctgtggccta aatgtgtaca ttactcacat ctataagtga taaatgcctg ttctggaaaa
      481 agagttttgg tatatatcta taga
//
LOCUS       KCLJ01003733             378 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 416518cal ultra-conserved element locus
            uce-2395, sequence.
ACCESSION   KCLJ01003733
VERSION     KCLJ01003733.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 378)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 378)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..378
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="416518cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>378
                     /note="ultra-conserved element locus uce-2395"
BASE COUNT          130 a           66 c           46 g          136 t
ORIGIN      
        1 aatatcttgt aaacctatac tagttttcaa tgtgtctagt agcacctacc tggttctctc
       61 aaactaccat attatattaa catattattg catttttcca cagatgggta tggagtgaac
      121 tgtaaaaaca agcatgcaat cacatcaatg cagacttatt tctttaaaat gtcatactgt
      181 atatgattta ttatgttaac actcaaccac atcatattat ttatgtctgt atattttgaa
      241 aaaaagtgct gctttgattg acgtcacctt ttttcttaga aagtaacaag atagatgctt
      301 caacaaaaac aattaaaata ctctaatatt gtccttaaaa ggtttatatt cttctgataa
      361 ataatctgtc acagcacc
//
LOCUS       KCLJ01003734             895 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 416624cal ultra-conserved element locus
            uce-255, sequence.
ACCESSION   KCLJ01003734
VERSION     KCLJ01003734.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 895)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 895)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..895
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="416624cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>895
                     /note="ultra-conserved element locus uce-255"
BASE COUNT          301 a          170 c          170 g          254 t
ORIGIN      
        1 aagactccaa atattgattt taattggaat gaagtgctgc aacattatgc ataaagcttt
       61 agtgaagtgg caatttacct aaggggttta ctgattgaaa agctctcaaa cctgaaatca
      121 ctagagaggt aaaaagaagg gactctctgg agtggggtgg agggtagcct ggtaaaacaa
      181 atccctctca aatctgaagc agatgttagt gtagagggaa gtcaattcag caaggtacaa
      241 tcagctttac aaaaattatt ctgtaaaaag agaacaggtt cttgaaagag ctaaatgtgt
      301 ttctgttcat ttgctgtact aaggaatctt caaggagact ggtgttgcaa ttacaactaa
      361 tcctccccaa aaaattaact gtgttgaagg ctttgtaatt tccctaggta caatttagct
      421 gtcacttact ttaaaattta ctcaaacatg cgttcggaac agcactaact tcacatgtca
      481 agtgctttcc agccaattga gtctaaactg gaagtcggtg ttaaacaact gaatgattag
      541 acaagatagc tcatttccct gctcttttgt tcagaataaa atgccacatt tacattatca
      601 gactcaacag gattttctga cagagggaga aaaaacccta gtgaacactg tccatagcaa
      661 gcacatgaag cctgtcattt accaatcatc cttcaaaaag caatagccat gaatgtaact
      721 taattacgac ccaatgatcc ttgacgaaaa atcatcttat cactgtcctg tccccatagg
      781 gcaaatgaga cacttttgtc ctttggcact gatgatgcta aattcctaat tgcaataatg
      841 gagtaagaga gccaaacatc tttcattgca actaaggagt tttaataaag ctgct
//
LOCUS       KCLJ01003735             771 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 416737cal ultra-conserved element locus
            uce-3897, sequence.
ACCESSION   KCLJ01003735
VERSION     KCLJ01003735.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 771)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 771)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..771
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="416737cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>771
                     /note="ultra-conserved element locus uce-3897"
BASE COUNT          254 a          162 c          122 g          233 t
ORIGIN      
        1 tagaggggaa attttattta cctattcagt gctatagcaa cagaatatac atacctcaga
       61 aacactgagc ttcaaatgaa atagtccaca gttgctgagg agttagctga gtttttaaat
      121 gtggtatagt ttaggtaaac aagcatttgg ttactctgaa gtgcaaagac cttggtttgc
      181 ttgctaggtg tgatccagac atagccagta caaaccaatc cacactgccc tactgttcac
      241 ctcaaccttg acctggagat taaactcact tttattgcac acaaaggtca tctgtgttag
      301 gtcaaaattc aaagtccctt gtcagctaag gttgatatat tccaaccttt cctactctaa
      361 tgcatcaaat ttttcatggt gaggtcatat tcagcagaca gtgtattcag caatttatcg
      421 tgccattgta atatagccca gaatatgact gtccaaaaaa caatgcatga ataaaatatt
      481 ttccattctg atgtagcaaa tcgcctacgc tcgtaaaact tgagcctaga cttgtttcca
      541 ggcttcagaa gaatgataca ttttctaaaa tacaatcaag aattaccaca atattcctta
      601 aatataagca acatgaatat aatggtatcc taaaatccac aagtcaatta aaaagcacat
      661 atggtcagtg ttaaaacttc cacttcatcc tcccttaaca accaccataa tcttgccctt
      721 aaatctacag acatctgttg gtctgtctga tgacatcaag cttactttag a
//
LOCUS       KCLJ01003736             612 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 416847cal ultra-conserved element locus
            uce-4548, sequence.
ACCESSION   KCLJ01003736
VERSION     KCLJ01003736.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 612)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 612)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..612
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="416847cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>612
                     /note="ultra-conserved element locus uce-4548"
BASE COUNT          203 a          105 c          105 g          199 t
ORIGIN      
        1 atagggtaga atcctctttt gggttagaaa gaaagttact cctaaaggag ctgtaagtgt
       61 aaattttagc tttcacctaa tcccaactgc tttcaaaatg cttatgcatt gcaatccaga
      121 gtctcatggt aagcaatacc taaaaaaccc agtcttttaa catcttttaa attagttgct
      181 tttatttctg aaaagctaat atccaaaata gcaacagtaa agatgtccag gtttcaatga
      241 aatatatttc ataaattagc ttatcattgc actgatttag catgcctagc aggtgaaaga
      301 caaaaacatg tgttatcttc cctagggaac cttcaatgaa tgtcattcta gcttcatatg
      361 tctttcttct ctccccttct tgaactgata taaaattcta atgtgtgccc tctggttcca
      421 tcttcattga aatctagcaa aatcgctgaa ggtaagatag tggcaatggt gcatgaaaaa
      481 agggaaaagg aatacagtga ttcatagcat acttgaagaa agttgcagtt gttaacagca
      541 ctacttttgt gtgtagacag gttaaaatgt gtcatatatc agtgttaaaa ataaagttat
      601 tcatcttagc ta
//
LOCUS       KCLJ01003737             321 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 416958cal ultra-conserved element locus
            uce-2384, sequence.
ACCESSION   KCLJ01003737
VERSION     KCLJ01003737.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 321)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 321)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..321
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="416958cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>321
                     /note="ultra-conserved element locus uce-2384"
BASE COUNT           87 a           66 c           69 g           99 t
ORIGIN      
        1 ctcctggggt gacagggcca gagaggtcac ccagggaacg ggctgggatc cttctgctca
       61 gctcttgtaa tggcattagc aatgactgtt tcttactcaa tcatactccc aaaggatttt
      121 caataaactt tttatgtgcc ataactgtta cattaaataa agctgaaagt attgagtaaa
      181 ctgactgtaa atcactttag atgccttgga attacattaa gtgtgagaat tatggatctt
      241 ttgctgcttg cagaaacaga gagacgacag agccagaaat ttttatgctc ccttttcttg
      301 tgtcctcctg ccatggcctg t
//
LOCUS       KCLJ01003738             813 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 417059cal ultra-conserved element locus
            uce-52, sequence.
ACCESSION   KCLJ01003738
VERSION     KCLJ01003738.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 813)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 813)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..813
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="417059cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>813
                     /note="ultra-conserved element locus uce-52"
BASE COUNT          244 a          153 c          167 g          249 t
ORIGIN      
        1 cctctcctgg acatgggcaa agctaaacca actgggaatg cctccacaga agtgctggtg
       61 tctcttgctg ctcatactct agagagatgt tatgttatcc atctgatatc ttaataacat
      121 caaatcgttt aggtgcaaaa catatgaaaa gttgtgagta cagcaaacag tcccaaagta
      181 ccttaatcct tctatcgata gcaccgctat tgggttacac ggttttaatc ccagaggagt
      241 tgttgcctga cattaaactg tccaaatagt atttatatct gctgctgccc tgcaagatca
      301 cttaaccctg cacagcagtt taaaagtagt taatgacaga cccagcatga cttgcccctt
      361 atgaatgatc acataagttc gacctgtgct gtcatggttt atggaggaag gcagtttgtc
      421 catagcctgc ttcagccaca gcaggtaatt tgaaatgaaa tgagacagtt tctacaagta
      481 gattgatttg ggaatcttgc ctgttcttcc ctttgaccct tgacaagttg acactacaaa
      541 gattgtgact ttaaaaaatg attgggtgca aatacattta ggtagatgat ttactatgtg
      601 ttaaagcaag gacagtgcat ttagaatgga gctgtgaggg aaggtaattg taaactttaa
      661 caactcgtgt tttatgtttc tgtatcttat taattatctg agtaggtgaa tcttctgata
      721 acaggagacc aagtactgta tctaataaac tatgtgtgag agtccacaga ctctgcatac
      781 cagtattcag tattttagtt agcagaaata agt
//
LOCUS       KCLJ01003739             700 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 417172cal ultra-conserved element locus
            uce-7004, sequence.
ACCESSION   KCLJ01003739
VERSION     KCLJ01003739.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 700)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 700)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..700
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="417172cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>700
                     /note="ultra-conserved element locus uce-7004"
BASE COUNT          200 a          129 c          129 g          242 t
ORIGIN      
        1 gcgcttgaaa agtcagcagg taaggaagat aggatcatat tctgatgctc agaatatttg
       61 gaactttcag ctgctgtacc ttctgaatgt atgttttcct tagctgtgga gttgctgttc
      121 tgaatcgagt actaaaataa atacagtttt actgccagca cagacaacgg aggaaaaggc
      181 aatacagaaa catggcaact ttcaatcact tcctgacttg ttaatgaacc tcttttctaa
      241 ctgagacttt gcttttgagc taccgtgttt tccccaagcc attttataca atgagatggt
      301 aacagttgtt tgtttgataa agcacgtact atttagaaca cagatgtttg attattattt
      361 atttctctct gaagcctgct aattcagtcc caaatgatct ttttttttct ttttgcttaa
      421 atttaatttg gaatgtatgt tgttggtaag tgacagatag tttaattatt aataggatcc
      481 cgcaatgcga tgcaccatag ttttaaagtc atctggggcc aaaacaacac tacttccttc
      541 cttccttatg cttctgggat tccttgaaga atgcaaaggt aattacaaaa ctcatgacaa
      601 atctgcatgt attatgtcct ttcctcaaca tttgtgcttg cctatggttt tacaaagtgc
      661 cgctcttact atgaaatggt aatgaatcag gagagacttc
//
LOCUS       KCLJ01003740             661 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 417280cal ultra-conserved element locus
            uce-2385, sequence.
ACCESSION   KCLJ01003740
VERSION     KCLJ01003740.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 661)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 661)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..661
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="417280cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>661
                     /note="ultra-conserved element locus uce-2385"
BASE COUNT          155 a          135 c          128 g          243 t
ORIGIN      
        1 ttcatcagac attttcattc atgtttgtgc tttgctgtta agatctgtat atggtggtga
       61 tgccaaaatg taacctttaa attctgcaca gctgtagttg taccctttct tccccagtgt
      121 acctcctctc cttactcatt caaatgtacc ttttattcct aaatctctct tggttgtggc
      181 acagtcctaa tgtgcacctg atttgatgag atttcaactc ctgtccttct gtgtgttttc
      241 gcagccatgc ccggttacgc tgtatgtgcg cctgcaacag gtgtacattt tgcatctgtc
      301 agaacttcct caactcagac ttgctgcaat ctgtaaagaa caaactcttc actgcagttc
      361 ttaacaggtc cttaacttta tttactaggt accaggtgtg caaagggtgt cgaataccaa
      421 ttggtaacta tatactgcag atttttcact ccatatccga taggccaata ctgtcataga
      481 attatcaaac ttggtttaac ttgagcttag tttagacatt tttgtgattt ggttgttgat
      541 tcaggctctt gtgattgcag aaatactgtg caggaattag gtgtttttag ggaactgagt
      601 gtctgcaaat ctctgtaatg tttcgcatta caagtttgtt tagtggtagt gccttttaga
      661 t
//
LOCUS       KCLJ01003741             646 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 417387cal ultra-conserved element locus
            uce-7183, sequence.
ACCESSION   KCLJ01003741
VERSION     KCLJ01003741.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 646)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 646)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..646
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="417387cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>646
                     /note="ultra-conserved element locus uce-7183"
BASE COUNT          192 a          101 c          118 g          235 t
ORIGIN      
        1 cattcactaa agtcaaatga tatgttcttt ctgtttgttt ttaaaattgg gttgcccatt
       61 agtctttggt agaagtttca ctgtatatta aatgtatcac actgtatact gtatggcatg
      121 tgtgtgtggt atatacagaa ttagcacttg agatcagact ggagaaaata tacacatgtg
      181 tgttgtatgt tctgcaaatg gcacacaata caaacctgat aaaaaactca catttttttc
      241 ctattgcagt tgaatgcaca tttgtcagaa tgtattaatg ccccaagtac ctgtagtttt
      301 aagcgttatg gctgcacttt tcaggtcagt atataacaat tatacttccc aattgatgaa
      361 agtctttgac atgaaagttc tggacttctc tagtttcagt taagaaatca tccagttgca
      421 ccaagtacag gagatgtttg attttgcatt ttaaaaataa tcaacatgaa aagcccacac
      481 attcctgcag tggtttgtga gttcagttgt taggtgtatc ttgttgaaat aggaatatga
      541 accatttgaa gaacttctta actgaggata agaggaaagt ctctttagtt cttcagcaac
      601 ttcagttgtt tctattaagt atgtttatat tttctctcat ttgtgt
//
LOCUS       KCLJ01003742             574 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 417496cal ultra-conserved element locus
            uce-2656, sequence.
ACCESSION   KCLJ01003742
VERSION     KCLJ01003742.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 574)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 574)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..574
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="417496cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>574
                     /note="ultra-conserved element locus uce-2656"
BASE COUNT          187 a          102 c           93 g          192 t
ORIGIN      
        1 taattcttaa ttagaaatga gtaatgacat accttatata agattctatt cccaacttca
       61 aaaggagcta cctaggtttc cttggtgtct ttactttgaa gaaaatgtct tttattactt
      121 attttagtac aacacattaa aatcaaatat ctcctgtagc aaaacgattc aagtctctgg
      181 aactcaaata attttctaat aaaaaatgca tgagacaaat aaatgcactt tatgttccac
      241 aagaaaaggc agtttcaaca ggctaatgct cagagaaaat tcattttatc aaccagccat
      301 ttcattcttt ggtgctgtta caagctcccc gcggttgcta agcaaccata attcatcgta
      361 ccttttaatg gatactctgc tactgctgag aacattaagg tgaagagaat aaatgccttg
      421 ggtgaatctt gaaatctttc attatgcatg tcattctatt tctgtaatgc tataatgctg
      481 aaatgtttct gtggcaggaa actgagttgt ggtaattgca tattccactc atatatgttt
      541 tgtaagcaga gcagcacgta cttgtctaaa atga
//
LOCUS       KCLJ01003743             508 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 417607cal ultra-conserved element locus
            uce-4170, sequence.
ACCESSION   KCLJ01003743
VERSION     KCLJ01003743.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 508)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 508)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..508
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="417607cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>508
                     /note="ultra-conserved element locus uce-4170"
BASE COUNT          165 a           88 c           93 g          162 t
ORIGIN      
        1 tgtagcatca tatctctcaa gacagttcat aaaaacacgt ggcctttgtt catcacaaat
       61 atacagttgc atcctatata ttgttaatat ccataaacat ttctctttgg ccatttctca
      121 gctgcaatgt gctatagaca aatgccagca gtgcattata gaagatatga ctaatctaga
      181 gaatttccat ttgaaagaga aatgagtaat aattgattgg cctagatcca aagtcacagt
      241 ggggttcaaa aagcttgtaa gtgccctcat aaaaatagaa gctgtatcaa ccaattgaat
      301 ttaattatat gtgaaggtga tgagggagct aaacagcctg taattggagt ccaattactc
      361 agctggtctt ccataaaatt aattcatctg aaagtttgcc attgtcccat gctcgaggcc
      421 tgctgctggt ttaattagtt aataccgagg aatcttgaaa cattacatta ttttgtcttt
      481 attgccaatt atgggttaag gaaaattg
//
LOCUS       KCLJ01003744             745 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 417713cal ultra-conserved element locus
            uce-6887, sequence.
ACCESSION   KCLJ01003744
VERSION     KCLJ01003744.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 745)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 745)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..745
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="417713cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>745
                     /note="ultra-conserved element locus uce-6887"
BASE COUNT          221 a          153 c          144 g          227 t
ORIGIN      
        1 atgctcaaat atttaaaaga gtccttttgt ttatttttcc tctctccagt gggctgtttg
       61 cttgagtcaa gactgccaga tttggtccca tggaacatga tctaaataaa ctgcaggaag
      121 tgagagaaaa aaatcttgta ttgttccctc attgcttgaa ttgcctgaac tgcattcagg
      181 tagcctgacc tctgcaaaca tctgctaaca tgcacggggc tcgcccccct ccagtttgaa
      241 acctgatatt aaaagcataa atattctaca agtaagtttc caccttaaat aaattaaatt
      301 gtgttgcggc agtagctaag gtggtcaatg caattaaatt caaaacctga atgtattgaa
      361 ctttctgcaa ttatacatgg gtcatctctg gacaatatgt tggccatctg gtagcatctg
      421 tgctgttccc actaatagag ttcctgctgt ggctccaggc catgacaggc agcactaagc
      481 aggtcacatg ttgtgtcttt cagccatatt taggtcacag ttttggggga tgcaggaata
      541 atctcattgc acaaaggcaa tgaaaatgaa taacccctct caggtatttt gagcattaca
      601 aaaagttaaa ggaatagttt tcaggatttt accccaggat taagagcaaa ttattgcatt
      661 taaaactgca aagctaaccc agatatctct tctctcatct ctttaataag gctctcacaa
      721 atatttgttg gcctgcgaga ataag
//
LOCUS       KCLJ01003745             575 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 417809cal ultra-conserved element locus
            uce-3338, sequence.
ACCESSION   KCLJ01003745
VERSION     KCLJ01003745.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 575)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 575)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..575
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="417809cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>575
                     /note="ultra-conserved element locus uce-3338"
BASE COUNT          180 a          112 c          102 g          181 t
ORIGIN      
        1 aagtatttac aggcttttct cccacacaat ttccatatgc ccttatttac acctctctca
       61 aggcgaccac agttaaataa tctgtcacag aaaaactgta aacaaaaagt tctggttatt
      121 ataatatttc tgcatttata ttccatcaca tcagtattaa aggctttcag ttacagtgct
      181 tctggggata aaaagctaaa atgcctttgc tcacaggtgc attaaatcct attaaagaat
      241 cttccttata gcacatacct cattactgca tacaaaggct taaaatgaag gtgaagtgta
      301 caaagtaaga tttgatatta ctcggtgtgc atatgctgaa gtcattaggt tttacactgt
      361 actccaatga tagtaggttt catattccta ttgagttgct ttcagcagtc aatgcttctg
      421 ggtcaagtag tctgacatgg ggtgatgtgt ctcaatacag gggatgagaa aacttcttta
      481 agcagcttta cacaatgaca agtgcacttc cctccatagc tttattatgc aatataagca
      541 tcaggtcata gaacagtcca cagtgtgggg atcaa
//
LOCUS       KCLJ01003746             576 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 417917cal ultra-conserved element locus
            uce-2796, sequence.
ACCESSION   KCLJ01003746
VERSION     KCLJ01003746.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 576)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 576)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..576
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="417917cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>576
                     /note="ultra-conserved element locus uce-2796"
BASE COUNT          171 a          119 c           91 g          195 t
ORIGIN      
        1 tgctgctctg tccaccctct atctgtttat ctgttaccat ctcagtggta atatgcagta
       61 tcaattggat tttaaaagac atagatctct tatactagct gtcctttttt ataatacctt
      121 ttacaaattt aatcaatgca ttttaatata caatatagtt taagtgcaat atatgataaa
      181 tattcaagct tcatcttaaa catgctctag cctttaaatt gttaaaactg cagtgccctt
      241 tcaatctact tacataatgt cataaaatat acatttcaag gtaaatgaag tcagctactt
      301 caatttagtc cctcaaactg gtagtaaatg agaggttaac actatggtgc caaacccatt
      361 attgagtaaa tttagcacct tggacagctc tgtaaaatct ttattgcttt cctgacctgc
      421 tcgtcatgtt ctgtctatgt gttcagtggc tctcagctct gattgaaagg caatatatta
      481 gatccccaac acaaacatgc tcgggggctg cttcactgtg agcgtaatga cacggaggtg
      541 agaacaattt tctggtcacc gcaatccaag cacctt
//
LOCUS       KCLJ01003747             680 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 418027cal ultra-conserved element locus
            uce-5244, sequence.
ACCESSION   KCLJ01003747
VERSION     KCLJ01003747.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 680)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 680)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..680
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="418027cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>680
                     /note="ultra-conserved element locus uce-5244"
BASE COUNT          178 a          177 c          156 g          169 t
ORIGIN      
        1 cctcacctta cagctagagt gggaacagtg ggtgagatta aaggatgaga gcaagatcac
       61 catatgggca gaccatacct gaatggtgga tgttattaaa acaggctcca tgtctttacc
      121 ttaccacctt acctctgcaa ttccactgct gcccacttca ctttacctct gctgcctgtc
      181 tgcctgactc gtgaaatgct aaacaatttt gatatttacc tgtttatgat taaattgcaa
      241 aatgatctgt ttagttctgt tctaaattaa ggtctacatt aaatgtcata gcatttatct
      301 ttcataaaac gagacagcaa ggacactaat ttcccaggca ctcaatcact gcccggtgcc
      361 accagagaga gcggctgtgg aagcgcgtgc ccgccattca cagccggctt gacagcgccc
      421 aggcggaatc ataaaagtca attaatcatt aaaagctgtt accagcctgt attgaactgc
      481 tgtggcacaa aatgttaatc agccccacat caataccata aattcctgca aattggagcg
      541 gtcgatagcg ccgaggccca gcaggtcgat gggagggcgc aaggcctctc cgccaacatg
      601 gtggcttggc agccaccctg tcctgtgcag gcccgctggg gctgagcagg tgccgatgca
      661 tcactgcccc tgatgggtct
//
LOCUS       KCLJ01003748             314 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 418135cal ultra-conserved element locus
            uce-7892, sequence.
ACCESSION   KCLJ01003748
VERSION     KCLJ01003748.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 314)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 314)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..314
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="418135cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>314
                     /note="ultra-conserved element locus uce-7892"
BASE COUNT          112 a           61 c           86 g           55 t
ORIGIN      
        1 aggaagagta gctaaataat cagatgtaaa ggtcatccag ttgggaaccg gtgaactatc
       61 ggacccaaga gtaaagcagc cagaaagaaa aataaaaggt aacagattca gcattgtcca
      121 aaagttccag accagtgatt aatgtgtgag ataatggact tgggaaatga gtaaacactc
      181 ccgtgctccc tgctttgtgc ttgaatgact tgatgacaag ggcagagcaa ggtgagaatt
      241 taaacaggac tacaggaaaa gagacaaagc cctgcgacag cagcccgggc agagcccgca
      301 aggagcgcac ggag
//
LOCUS       KCLJ01003749             563 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 418241cal ultra-conserved element locus
            uce-7897, sequence.
ACCESSION   KCLJ01003749
VERSION     KCLJ01003749.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 563)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 563)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..563
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="418241cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>563
                     /note="ultra-conserved element locus uce-7897"
BASE COUNT          158 a          109 c          111 g          185 t
ORIGIN      
        1 agtaatggat ttcatgacaa attttttgct ataggatcag caggaggcag ctataccata
       61 atcactttga gctcaataag gagatcttta caggcaactt tgttcttatt tcttaacggg
      121 attaagaagc tcagctcttt aaattcttgc atataacact gacatttcga gggtgtgttt
      181 ggaccaagga gttcaaagag gaaaagccaa tatgactttg ttttttacct tgctgcagga
      241 gcagtttgtg caaatcgcct ataagcttat tgacctgaat ctttgactcc ttgttttctc
      301 tggatttggc tggagtgtag acactgatag agcactgata gaggtgattg cacagccctc
      361 ggctttgctt ggcaccactg acattatctt tccctggcaa tcacattcct tttaattcat
      421 tgcattttat ttatgtagac tttctgacta aatgaaggat acattgttaa tcagagacag
      481 gggataacta gaatatgcat aagaagtcac actactcctt ccaagaatgc aattgtctgc
      541 atgattctca tattccccag act
//
LOCUS       KCLJ01003750             392 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 418348cal ultra-conserved element locus
            uce-950, sequence.
ACCESSION   KCLJ01003750
VERSION     KCLJ01003750.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 392)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 392)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..392
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="418348cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>392
                     /note="ultra-conserved element locus uce-950"
BASE COUNT          145 a           62 c           79 g          106 t
ORIGIN      
        1 aaaaaaaaaa aaaagggcag aaacaaaggc aagcagatgg ctaaagatga aggtcacatc
       61 agattgagaa gtttgtcaaa atgtgatgac ataggtaatc tgtaaactgt tattgcacct
      121 agctggaggt gctgaaaaac attttgaaat tacaaaaaac actggagtca ccagcacaca
      181 ggcaggaatg atagcctgga gtggttctgc tcgaatgcca gatgtggaaa gcgacatatc
      241 tggaattaat gatattaaac atgcttttct tttatgctca ataataactc tattatgatt
      301 gatacaaacc gcagacactt tatctagtac aaatggaatc gtctgtcatt gactatatta
      361 aatcatcaat ttctgcatga tgagaatcgt tt
//
LOCUS       KCLJ01003751             598 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 418456cal ultra-conserved element locus
            uce-3186, sequence.
ACCESSION   KCLJ01003751
VERSION     KCLJ01003751.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 598)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 598)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..598
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="418456cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>598
                     /note="ultra-conserved element locus uce-3186"
BASE COUNT          152 a          126 c          170 g          150 t
ORIGIN      
        1 atcacgtaag ctcagcatcg ggcctggctg ctgcaggagt gggacaaagg gctgatgcta
       61 cactccggtt tccatggcaa cagaggaggg gtagtgagac cagaaatgtt gcaaacaccc
      121 cttcttctca ctgcagccca gcacaccgtg ctgcaaaaga cagggctgtg gagagggggt
      181 gggaagagtc caagtgtctc tacctttcag gttgcagagt ttccaaaata aaaagaaatg
      241 acaagaggga aaggaaaccc gccacgcagg cctcgctttc tgcgtgcgaa atgcgtgtgt
      301 tctttaaaag gcagtggttg gctgcttatc cggacatgat gtggttgaag ctgtcatcgt
      361 aatggaaatt cattgctgta gctatggtaa attgagtttt ctgcctgtgc tgaatgcatt
      421 agtctaatga gatgtttgca gctggagagc tgagctgctg gagacttaca ctgtgctaaa
      481 agacagggag aagatggctt ttgcttcctt gtgactgtgc tgaaagtcct ctgtttgggt
      541 cccaatgccc aggctctcta aagactctgc tcagtgtctt agcctaagaa ataggtaa
//
LOCUS       KCLJ01003752             431 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 418561cal ultra-conserved element locus
            uce-6717, sequence.
ACCESSION   KCLJ01003752
VERSION     KCLJ01003752.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 431)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 431)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..431
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="418561cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>431
                     /note="ultra-conserved element locus uce-6717"
BASE COUNT          135 a           74 c           82 g          140 t
ORIGIN      
        1 tgtgagattt cctttcttaa tggcaaagtt ttccagcaat aaatcacaat tcagtccatg
       61 ccattagttt tgggggcatt atatcccctc attaaagtgc ataaacaatt atatttattg
      121 aaggtaatgt actgtgtagt gcattataac gacactcatt aacatatgta atcatcattt
      181 gaatgggctt tactacaatg taaactgata atggcatgat tacccactgg gttattaact
      241 tttcagtcct aagataataa aaggtgatac aagaaacaaa aagcacatgt gcatagccct
      301 tcacatgtga tttatgtgct tcactgtgga gctatgaaca caggtaccca tcattgggga
      361 gactggctct ttattgcaca ttgtatttga cagaataata aatgtagctg aatggttctt
      421 gggtgggcat c
//
LOCUS       KCLJ01003753             832 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 418666cal ultra-conserved element locus
            uce-1970, sequence.
ACCESSION   KCLJ01003753
VERSION     KCLJ01003753.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 832)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 832)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..832
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="418666cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>832
                     /note="ultra-conserved element locus uce-1970"
BASE COUNT          282 a          141 c          149 g          260 t
ORIGIN      
        1 ttgcatccat gtgcatctgt gtgactccat atacagtttt ttcttttaca tcacaacgtg
       61 cccaaatgct ctgtaggcat caaagcaggc aagaatgaca caggaccctc taggtagcag
      121 ggtaagcaga agcagcaagc tattaagatc ttcctgttat ttcattgatg attttgtagg
      181 tatcatcttc taatctcatt aaaaagactg aatgtgcatt tgactatttc tgaggagaaa
      241 attgctaaga aaaatatata tataatccta ccattttcgt aggaataggg tgagttatta
      301 ttgattcaca gagcacgaca aaacatcact gcatgaatta gcaaacagct gtttctaatt
      361 tgagtttaga actgtacaca gaggaacttg ttttagtgtt cactcctttc atttataatg
      421 aattttaatt accgctacag gtgagaaaaa tgtagaaaca agcttgtatc ttgtggaaga
      481 aacaaaggag agacagatgc taacagattt acagtctgtg ataaaaggaa tgttttggta
      541 cactttacat gtaattagag tgcagctgtt ttcagtccca agtccatgat gcacagcaga
      601 atatagtatc tgctgctttt ccaaagggag taaagaaaaa cagtgattca actctgaaag
      661 catttagttt attcctagat ctaacataaa actttctcct ccagccctat tatgccattt
      721 atcgaagcat gaaataactt acttaatgat atgttaattg ttaccagcaa aatacagact
      781 gtttgacata aggaaaaata atgttaaaaa ttatcatctg ctcagaatta tg
//
LOCUS       KCLJ01003754             756 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 418776cal ultra-conserved element locus
            uce-2998, sequence.
ACCESSION   KCLJ01003754
VERSION     KCLJ01003754.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 756)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 756)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..756
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="418776cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>756
                     /note="ultra-conserved element locus uce-2998"
BASE COUNT          212 a          151 c          142 g          251 t
ORIGIN      
        1 tgtgctctgt aactatattt tgttttttcc tatcacttat aacttcataa attttggtaa
       61 atgttagatg gtaatttcta aacttcataa tcgtttttta ttcgtgataa ggaagaggaa
      121 gggaggattt catatctctc agatctattg gtttattctc caaatgacag gttcctgact
      181 gatcaactat gccacctgct actaaagctc agtaatatta gtctgtgcaa tggcttcact
      241 ctcatctcac acctcagaga tcttgagctc aaccccaggc atcccctgtg tgtttaaatc
      301 agcttaacgg ctcatacagc gtgctgattt ccttgtaggc ctctgttttc tcaaaaagtg
      361 atcacctttt gccaatgccc tcaggattaa acagggcagt ccggttttcc ttttctgcat
      421 tggctatacc tttgtagtca ataaaagact aactagaaaa gaatcagctg atgagagaat
      481 caatcttctg gaagcctccc cacagttttc tcatcatttt tgtgccgtct gtcatctcag
      541 attgtaaaat ggaaaccaaa actcagtatg tgggaagact tttagtgctc cttgttaaca
      601 aaaacagtaa gaccaggggt tttgatctta tgagtgtata ggtaaacagt aagctgtaag
      661 tgtgcactct tgaagtagct tttccatgtt tctaatggag gtctgcgaaa aattatcaaa
      721 gaagtatcac aaaggtctca tgacatactg tagtgt
//
LOCUS       KCLJ01003755             486 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 418886cal ultra-conserved element locus
            uce-5214, sequence.
ACCESSION   KCLJ01003755
VERSION     KCLJ01003755.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 486)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 486)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..486
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="418886cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>486
                     /note="ultra-conserved element locus uce-5214"
BASE COUNT          168 a           63 c          100 g          155 t
ORIGIN      
        1 gaaagaaact ttatgggcac aaagtcttat aaaagtttaa actcagattt ttaaaaaggc
       61 agtaaagaaa acttcctaga gctatgctaa actgcagaaa aatttacaat aaatgtatag
      121 agtcttacat atactgtaag ttaatgacta atattttaac tttggttggt taatgtttgc
      181 agggcactta cagatgctag aataatctct aatgtttttg ctcaatctgc tctggagatg
      241 gatgaaataa atagtttaaa ctaattaatg taacaccagc tgttacaagt gcttggcaga
      301 cgtctgtgag ttttgatggg cagagagcgg ctgttgtact tgactttatt ttagtacaat
      361 gttgatcaca gtgtaagctg gaataaatga cgagccaaag gaaggaacag aggatgaatc
      421 ctgtgtaatg caaaataaat attgcccttt ttctgaaaat attttttgag gtcaagggag
      481 atttat
//
LOCUS       KCLJ01003756             498 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 418993cal ultra-conserved element locus
            uce-7421, sequence.
ACCESSION   KCLJ01003756
VERSION     KCLJ01003756.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 498)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 498)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..498
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="418993cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>498
                     /note="ultra-conserved element locus uce-7421"
BASE COUNT          163 a           89 c          107 g          139 t
ORIGIN      
        1 ctcctcccag cagctggagc atacacaaga gtaccatcta atctgtagct agccaaaagc
       61 agcaacttta tctaaacttg gacagcacaa gattaatgct taaacttgct tgcaggagtt
      121 gaaaaccggt ttctgttgcc attagttggt tggaagggaa aacagagttg ccgttatttt
      181 tggatatgca aaacagtttt gattttattt cttgcaaact ataggactcc aagcccactg
      241 atacttgatc agaactacat aaacaccaaa aatcaagtaa tcaaagcaga aaggagggta
      301 ctgaaggagt tgggattttg tgttcatgtc aagcatcctc ataaggtgag ttctcaataa
      361 taatgtaatt gtaattctta ctctaccttg gtggcatcac tgggagctgt ggaacaacag
      421 aatgacctgt tttgttagag tacaaaaagt cacgtggctg ctttgacaat agcagaaaag
      481 tagtgagata aagaattg
//
LOCUS       KCLJ01003757             750 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 419101cal ultra-conserved element locus
            uce-5176, sequence.
ACCESSION   KCLJ01003757
VERSION     KCLJ01003757.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 750)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 750)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..750
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="419101cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>750
                     /note="ultra-conserved element locus uce-5176"
BASE COUNT          215 a          162 c          144 g          229 t
ORIGIN      
        1 ggtttcctcc cctgctagta agttttgtag aataagtacc ttccaccaac acagaacatt
       61 ggctcctagg gggtaaatgt ggggctctcc ccacttttga gaggctgaat atgttcctaa
      121 ctttgcacaa agcccagccc aaggaacaaa gcctgtggac caccactggg aagtggtatt
      181 agtcctctct gcagccttcc cactgtggat gcatgctcaa ttcccggata aatgcacctt
      241 ttaaactata ttaatgtaaa agttttattt gaaagatgcc agctgtggtc ctagcccagg
      301 tttattcatg tgggacattt actgggtcaa cttaatactt gactactgct tattatccca
      361 tcagtcttcg gggacaaccc atgatctaat tgcccggcat ttatgttgcc ctggcaacta
      421 taaatacaga gtaataatcc ttaaaggggc agtgtagaat ttcatgcccc tgcagtgaac
      481 tacacttcat ttcccagagc accctgtgtt ttttaattca gtgaataaaa atgtgtaatg
      541 aataattaat tatgtgcttg gaggcacaat agctgcctac ttttgaatat tcatcagtga
      601 cattattaat tcactagaaa tcccaaggag cagtgggata ggcttttagc ctagctggag
      661 gacttacaga taatactctg caacatgaac aaactttttc aagcagactt ttctttctca
      721 gagttagatt taatttacat cttaataaaa
//
LOCUS       KCLJ01003758             621 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 419213cal ultra-conserved element locus
            uce-3913, sequence.
ACCESSION   KCLJ01003758
VERSION     KCLJ01003758.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 621)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 621)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..621
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="419213cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>621
                     /note="ultra-conserved element locus uce-3913"
BASE COUNT          217 a          108 c          118 g          178 t
ORIGIN      
        1 aatcccttaa attgggaaac tgaaggaagt cccagaaggc agaaaaattt tctatcaaca
       61 actgaaaatg agttagcaaa ctagacaaca aagttccact tgacctaaac tttcagcaac
      121 aatgaaagct gtgtactcac attatagact atgcccttat gcacaatatt ctgtatggaa
      181 gatactgtca cattgtaaaa gacctagatc aacttaaaaa aataaaaccc aatagaatga
      241 ttacagccgc tgcatagaat gacaagtatt atcaacaaaa attaatcagg cgcatctttt
      301 agtgaactca attaataatg tgcaacaaca gggtctcttt tcttaagatg aaaattaatt
      361 agtggaggga aggtcacttg gagatgctga catcactcat cagaatgctc tggcagctct
      421 aattatttgt cttccaggct tgggtgatca gaaattattg caatacctga gcaacatttt
      481 gaaaaagctt tgtgcatggc tcttttaatt agaccgggta tttgattaat gcagtggaag
      541 catttagatc agcctcttat cattgagtga cttagaagtt ttagggtatt atagtgtgca
      601 agacagggtc actactgtag a
//
LOCUS       KCLJ01003759             619 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 419321cal ultra-conserved element locus
            uce-6593, sequence.
ACCESSION   KCLJ01003759
VERSION     KCLJ01003759.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 619)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 619)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..619
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="419321cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>619
                     /note="ultra-conserved element locus uce-6593"
BASE COUNT          183 a          117 c          114 g          205 t
ORIGIN      
        1 atctgtgtgc attatcctca gtaaatatta cttttacatt tggatctctg ctcatttccc
       61 ttatgacccc tgacagtctt ctcctagggt ttgattataa gtcactatgt actggagtct
      121 cgtaaggctt cgattaatcc gccgcaccta agcattgctg tgactataaa aggaaaagtt
      181 atgattctga ataagcatca gaaagaagca aaagcataaa gtattaaact ttcatccagc
      241 accataggag agatgtagtt attaaatttc agctgcttat caaactgata tgaaagtcat
      301 tttgcatgat tgctttgcat cctcgaatct tctgctttta tttgcagtgc atctctgcgc
      361 tttcttatta gaaaaatact caaaggataa aaaagctgat aatattattc agttttgaca
      421 attaggtaga aacattttaa gaagtgcttt ttttattgca gctagtaata atagtggtgg
      481 tcctcctggt agcagtctct tctgatgcta cccagggtga tgctagcttt accctataat
      541 ggccaaagcc ccgatgctta tactggtaaa gctgctaagg agtgtgagtc aggatgtcat
      601 tctcaatatc acaaacaat
//
LOCUS       KCLJ01003760             516 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 419434cal ultra-conserved element locus
            uce-213, sequence.
ACCESSION   KCLJ01003760
VERSION     KCLJ01003760.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 516)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 516)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..516
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="419434cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>516
                     /note="ultra-conserved element locus uce-213"
BASE COUNT          167 a          104 c           93 g          152 t
ORIGIN      
        1 aataactctc ctgtgcgctg tacattgtaa ttgtcagact gcaatttaca gtaatcctcc
       61 aatgcaaaaa cttaaatagc tgcagctgat ttgaaattca tacaaccagt tgaaagagag
      121 aaaaacaaga tgcacgggtt aaaaggccaa attgtgcaag tgtgtgcgct gagtgacaga
      181 cattttagta ctagcctggg accatatttt aaaaggtcac tgaaaacttt tggcttgggc
      241 cctctgacaa acaatgaact ttccatatat ttatttgcca tctctttgtt tttacagcaa
      301 gcagaataaa tgagttaaat gacgttgtgc gggtctgcac attgtcagca caggttataa
      361 gtcattatta aactccatca aatcagacca aacccggtct aggcaatgag actaaaagtt
      421 atttgcattc cttctgtcat aaaaaatcat atccccttac ccaagacttt cgtttcttta
      481 ttaaatgcag ccacaagagt atttcaggtc tggcaa
//
LOCUS       KCLJ01003761             356 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 419538cal ultra-conserved element locus
            uce-7076, sequence.
ACCESSION   KCLJ01003761
VERSION     KCLJ01003761.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 356)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 356)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..356
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="419538cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>356
                     /note="ultra-conserved element locus uce-7076"
BASE COUNT          146 a           55 c           70 g           85 t
ORIGIN      
        1 ctaagtctta aataaaagct agcagaaaga aaagcagcct actgattttc ttttgggaaa
       61 atgtattttt gtacatccaa acagaaaggg taagcagaaa gaaattgcga aataattaaa
      121 agccaaagat tagaaaataa ccttaagtaa gaggaagagg ttgttgagac agcttagcag
      181 agacaaaagg cactgaagaa cagaatcatc catattctca cactgtaaga taaggtagat
      241 aaaaagccaa ttaatctttg cactgtattt tgaaaaacat attttaggga agactgaact
      301 gtggatgcag ccactgaaca cagcaagcca tgcttgcatg aagccacttt taaaaa
//
LOCUS       KCLJ01003762             810 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 419644cal ultra-conserved element locus
            uce-5016, sequence.
ACCESSION   KCLJ01003762
VERSION     KCLJ01003762.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 810)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 810)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..810
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="419644cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>810
                     /note="ultra-conserved element locus uce-5016"
BASE COUNT          267 a          147 c          141 g          255 t
ORIGIN      
        1 acatatgttt gaatattata agcaatcaaa ataccaattt gaaagagaac acaaacattt
       61 gaaaagggta ttcatggact tgaagaagtt taattctaga acacaggtta gtgatgtctg
      121 gaatgaaaat ataaactgat ggaaatgcac atcaaagcca gaaaattata ccttttctct
      181 gtttaaattt acgtctgata ttgattatta gcaggaaaaa catgaggagc ttctgtttat
      241 gtagtggggc tgatggcagc ctttacttgt tactatcctt aaaagctgta gaacgagttt
      301 ttgcaatgtg actgcaatgg taatgggaaa catggctctg ttctctgatg ctgagttgtg
      361 attgaaggca ctgacctgcc atagacttat aataggggag caggtgtggc aatgatggac
      421 tttaatttcc tttaataaac cttttatgtg ccacactttt actgccattc tatgctctcc
      481 aaggtcctgc acataatagg ttcattactt ttgattacta tagtctattg agacaaacaa
      541 ctccagaaca cactatatat tatgttcagt taaaccaata tagactattt atccactgtg
      601 cattatttca cctgcaactc tacagacaaa attaacaaca gctcctgtaa gctaaaacta
      661 ttaaaaacac tggtactcct ttgtcatcat ttcataataa ataccacacc aatcacagtg
      721 ctgctctttt aattatgaaa caaaaagtgc ccactgcttc tactgaacag cagttacttt
      781 ggtctaaaca gcaggttgca ttgtgatgaa
//
LOCUS       KCLJ01003763             779 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 419754cal ultra-conserved element locus
            uce-7393, sequence.
ACCESSION   KCLJ01003763
VERSION     KCLJ01003763.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 779)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 779)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..779
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="419754cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>779
                     /note="ultra-conserved element locus uce-7393"
BASE COUNT          240 a          160 c          119 g          260 t
ORIGIN      
        1 aaatcactca tggacaatgt gctttcccag tttccagatt ttataaacct cacacctgtt
       61 tttcttaggt ttttgtgcta cgtcagccta taaatcctcc tgtatttccc agtgtagttt
      121 cttatgaaat aaaacttttt tccctccatt tgctcaactg ttttcaatac ttgcagtcaa
      181 gcctgaagtt gtcaatcaag gaacagctta tcagtctgag cttttccttt tcaagcttat
      241 actcagtgac ttttgagacc tgtcaacacc cagttgattt tagccttaac aataaagtca
      301 cactctatct cccacctagt agctttagat taaattctga tgtcatatac gtcatattta
      361 catagttaaa actcataaca aagcaaccca caggcaatag gatgtaataa ccatgcaaca
      421 gagccatttc ctgtcccctt ttttctctca cactatgttt cgtgtagttt attggatgtg
      481 aatgttttga aaatgaaaat cgtctgggag aaaactgcta gccaggcatg aggtttagaa
      541 gaattcaact aaaagaatat atagagttgt aaatgcatgg ccacctctgg tattgtaaaa
      601 tagaaactct ttcaatattc ctttcatttc cacaagaaga atagatggga ggccacaatt
      661 atgtgctcca gcagtcgatt tttaatatct ttaattctgc tcatattaaa ggaaaacaat
      721 taacttggag tcagaaagcc ttaaacacca aaagttttac agttttcatt ttaaagcac
//
LOCUS       KCLJ01003764             537 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 419862cal ultra-conserved element locus
            uce-3564, sequence.
ACCESSION   KCLJ01003764
VERSION     KCLJ01003764.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 537)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 537)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..537
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="419862cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>537
                     /note="ultra-conserved element locus uce-3564"
BASE COUNT          145 a           85 c          118 g          189 t
ORIGIN      
        1 ctttcattta ttttattgat ggtgtagctg gaagcagctt cgtggggtga gggcagtgag
       61 acactttgtt cttgcttgag tgatgtgatg cgctaggtct tcatcggagg agtgctgaat
      121 aaaagaagat ttatgttcaa atcacatgct ttaaatattt ctgctaagtg ctagtttgct
      181 ctttggtgtt tagcctgaaa tttaaagcac tgaggattaa aaggattaca acataatctt
      241 aaataatcct aagtgtcatt tacagagaga tggttgtaat aactaaataa aaccatgtta
      301 agggatggca gtgttgtcag tcagcaactg gaacagaaac agcgcctgtg tcactttgtt
      361 gttctcctct tgccggctta gtttgatatt gggtttgatg tgagttatca aataacttaa
      421 tgggctgctt ttcagtcagt gttgatatgg tgtttcaaac accattaact tggctaattt
      481 gcagaccaat attccacatt tcctactttt agtaaacttt tcaactgggt cttattc
//
LOCUS       KCLJ01003765             552 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 419972cal ultra-conserved element locus
            uce-1246, sequence.
ACCESSION   KCLJ01003765
VERSION     KCLJ01003765.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 552)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 552)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..552
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="419972cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>552
                     /note="ultra-conserved element locus uce-1246"
BASE COUNT          171 a          104 c           87 g          190 t
ORIGIN      
        1 tcctattaca tctagagact tctttttgtt attcaaatac atgaataaaa atgtatatga
       61 ttttaatgcc ttaaaccaga aagctacctt gattcccatt aaaaattgga atatttaatg
      121 tttttgctgc ttctgtggca ctttttttga tattgtgaag aacaaaaagt atttctgaga
      181 acatataaaa caaaaaactg tgtttgaagt attataataa aacaaccttc ttcttttaat
      241 gctaagtccc tttttaatga agatcctctg gcagctcttg aatgtataac tagtttatat
      301 catgggatga agctgtctgt tctgatgatt gacatgagcc cacattacaa tgtgattctg
      361 aaaattagtc catagaggtc cttttcaggt actactcaga ctgagagctg ccctccaact
      421 acagtagagc ctttttaacc ccactcattg gtattctaat ctggaagtgc tgtcctgctt
      481 tttaaataac ccaggcattc aggctagtac cccccttgac acattactta gccaaaggat
      541 tcaaatgaga tt
//
LOCUS       KCLJ01003766             704 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 420083cal ultra-conserved element locus
            uce-1154, sequence.
ACCESSION   KCLJ01003766
VERSION     KCLJ01003766.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 704)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 704)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..704
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="420083cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>704
                     /note="ultra-conserved element locus uce-1154"
BASE COUNT          202 a          175 c          139 g          188 t
ORIGIN      
        1 ccttggtcca tttggttaca acttgtaggg aaaccgagac atcaacccat gctgtacatt
       61 cttctaagga atccaggaag acaaaaactg ccaagaactt ccaaaattcc tttttactca
      121 gcactcctta agaaaggaag gacaggttgc tctgcagaag gacagaaagg gctgctcctt
      181 taaggcctct cctggatgcc ctttcccatt gagatgacta tcctcaactc cctcctcatc
      241 tccctccctt aagagttcct ctcctggccc tgacagtaag gtatttctgt cccacagatt
      301 ataactcact ctgggctatt attcaactcc caagccctgg ccctgctgca tttagtccaa
      361 acataatatc cttcatgcat atattatctg tctccctatt atctggaatc atttcggaat
      421 taaatttcag tcccgcaata ttggcttgaa gagcggctcg ttttatgggc tagtcaaagg
      481 ttagaatacc aatcaaaata acactgccga tgcagagaga cattttaata ttccaaaacc
      541 cggtaattgt aaaaggacat aatatttttt ccctgattac cccaaaggca acacatgtta
      601 acaaggcgag ggagagagtg aaagaaattt cagagttcgc tgcacgacag atttaaagga
      661 gaagtcgtgg acggctgctg tgctccagcc ccgagcagga gggt
//
LOCUS       KCLJ01003767             463 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 420194cal ultra-conserved element locus
            uce-4601, sequence.
ACCESSION   KCLJ01003767
VERSION     KCLJ01003767.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 463)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 463)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..463
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="420194cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>463
                     /note="ultra-conserved element locus uce-4601"
BASE COUNT          117 a          110 c           93 g          143 t
ORIGIN      
        1 ctaatttggt accatttgct gaatttcact cacatccttc ctttgagctg cttctgatgc
       61 caattaattt tccattccct gtaaccttgc tcaggaggcc acgattttgg tatgacagcc
      121 catgtgtcac agaacaatat gacaaattaa acctgtctct gctccgaaac aaataaaaag
      181 ggttgaatat taataaccag aagtttgttt attgaaaatt ttttctttcc aaagccttct
      241 ccgacatcca agttcatcca gggctacttg ggagctgtca taagtgctgt ctcaatagca
      301 gtgggtaact ctttcatgac tcttgggaga tggattgttg agcatgttaa ctttgttcca
      361 gcaaatgctg tcacctgtgg ctggccctgc atgcccgagc gcagaaccag atgccttggc
      421 tgctctgtga actcccactc gctaatttag agacatcgag gct
//
LOCUS       KCLJ01003768             313 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 420291cal ultra-conserved element locus
            uce-4238, sequence.
ACCESSION   KCLJ01003768
VERSION     KCLJ01003768.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 313)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 313)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..313
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="420291cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>313
                     /note="ultra-conserved element locus uce-4238"
BASE COUNT          108 a           56 c           58 g           91 t
ORIGIN      
        1 atgataaaag ttttttatgg aaatttctca cagcaagaca atcaatcata tttccaacac
       61 attcactgtc ttgagcctct gaacctcaaa gaattttttt ctatggagct tacttgttaa
      121 tttaacactg atcaaaggct aaaacattta tcatgcttat tagtgaataa acctagcagc
      181 aggtatccca agtgaggaag caaatcctca tttcctgcaa gaatgaactg gaaattatcc
      241 aaaacatttt tcaggagtga tgagctgtca aaaggaggta actggcagat gtggcagctc
      301 taggaggaat gaa
//
LOCUS       KCLJ01003769             567 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 420387cal ultra-conserved element locus
            uce-7126, sequence.
ACCESSION   KCLJ01003769
VERSION     KCLJ01003769.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 567)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 567)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..567
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="420387cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>567
                     /note="ultra-conserved element locus uce-7126"
BASE COUNT          184 a          113 c          111 g          159 t
ORIGIN      
        1 tttaagttag cagcccattc tgaacaagag atgcaatatt ccataacatt cttcctctca
       61 aagcaaatga aattagcaac actagagatt agttttttct gtgcaaacta tcaatagcac
      121 ctttagcatg cagggatttt gccgtcttca actagtgctt agcttttgga aggcatacat
      181 tttattccca tcaccaaagc tccctatata ttagctactt acagagaaaa tgggcagggt
      241 gaaccccact gtgtagagga cagtggatgt gatggtactg tcatggaacg gatacttgat
      301 gctgtcatca ttacagaaaa agcctctctg atacggtttt attttggcca agtttagaac
      361 accaaggggt aagccagctg ttgggggaag gaaaacaaca aaaacaagaa atacatgtgg
      421 ttaaatcttt ctaatcatgc atggaggaag ccaccaaatt tcctaagtat catgcaatgt
      481 accaaatttc tttcagaaca ctacttcaga aagactctga ggttcccatc aggtactaca
      541 aagttcaaga tcttctaata aggtgag
//
LOCUS       KCLJ01003770             532 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 420492cal ultra-conserved element locus
            uce-4831, sequence.
ACCESSION   KCLJ01003770
VERSION     KCLJ01003770.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 532)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 532)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..532
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="420492cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>532
                     /note="ultra-conserved element locus uce-4831"
BASE COUNT          186 a           80 c          104 g          162 t
ORIGIN      
        1 aaaaatactg tcaaatatat gaaatgaata ttgtgaaagg tatgcatggg tacttttgac
       61 ttgctgcaca aaactgtctt gtttttcttg catataaccg cagtgtaaaa gatgacatta
      121 tgagaaacct tctgacaaat tgattaataa tcttgagctg ctgaagttca gctgagtgag
      181 caattaaaca ttccaaacag caatgaacct tcagagataa tttatgataa ttttatgcac
      241 aagagctcag tggcttttta atttgataga atgttagtag catagatttc taacaaggga
      301 gtttcagtgc tccatacatc actgagatta cttaaacatt tcaaatgtgg ttgatgaatg
      361 aagtttcctg agatgtgaga agatacagaa agtgtcagaa ggttgagatt attcatcata
      421 tcaattattg aaagtggatg cattgacatc atactcccag ctcatatttc atggccatta
      481 taaagacaga acagaaataa cagacttggt gaactgcaga actgccggga ta
//
LOCUS       KCLJ01003771             723 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 420704cal ultra-conserved element locus
            uce-4515, sequence.
ACCESSION   KCLJ01003771
VERSION     KCLJ01003771.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 723)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 723)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..723
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="420704cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>723
                     /note="ultra-conserved element locus uce-4515"
BASE COUNT          225 a          123 c          126 g          249 t
ORIGIN      
        1 attatattac cttccagctg aaaagccact tcctttaaag atctgatatc agaagcctgc
       61 ttggagccta gcacacatct aattatctct ctcagtctta attatttagc aagtgctaat
      121 aaactgcacg tatcatgaca ctcatgtgta ataagcatat aaatttaatt tacctctctt
      181 tgaagactag cagacatgga attcaatcac aaggcaatgg cattatagcc tccaatataa
      241 catgaggttt taataagcct cctgtttgct gcacacatgt gcttaagact gcctggaaac
      301 caaatcagta gaaaaaaggg attactttag attactttga aatgtgcatt gtttgaaatg
      361 gcctctggtg accagctttc atgaatggct gattttactt gtggggcaca tcatctggct
      421 caattatacc aggctctttt gtatgacaag tgcacgtgtt gaaatatgaa attctaaaac
      481 aaagcaaatc agatggtgag taggtaactg tatattatta gaagtttgta acttaacagt
      541 gggcattctt cttactgggg aattttgttt tgaaactttc acatatttga agttaatata
      601 aaaacattaa ttttcatttt cttgttcagc tatataaggt agataatttc tcctacactt
      661 gtttattttt aaaatgttat tggagtttgt tgtttcaccc taacagatga agtgttggaa
      721 act
//
LOCUS       KCLJ01003772             711 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 420813cal ultra-conserved element locus
            uce-4324, sequence.
ACCESSION   KCLJ01003772
VERSION     KCLJ01003772.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 711)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 711)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..711
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="420813cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>711
                     /note="ultra-conserved element locus uce-4324"
BASE COUNT          233 a          101 c          154 g          223 t
ORIGIN      
        1 ttatcaccat tggcaaattt actgtaaaag tgattataac gtgaacattt aaatatattg
       61 cagaggagct gtggtttgct tatttaatag cggggtaagt cacaagatct gaaaatacaa
      121 attgctactg attttaaatg tgtagtccca tcttaaagaa tgttcccaca aatttctgag
      181 caaataaaaa tattcaaaac tacagtacta gagagtgtat ccttgtggtg aatgttaaac
      241 tgtcagcagg attttcaggt catttgacaa aaaggataca ggtgctgtag ctagcagtga
      301 aggtgactgc tagtttcatc aatcactttg cctttcttta agttgataca taatggaccc
      361 cttcaatcag cttccttgtt ctttgtcact tgtttaggaa gaagaaaaaa gagggtggaa
      421 gggctggact ttaaagtcaa ggttataaaa tgaatcgtta cttatttaca caggataaga
      481 aggataagtc agagtgagaa ggggttcttc ataaaatgtc gagtttgtca atgggtgata
      541 atatgcagtt tgaagctttg tgcagacctt gaacagtgac agtagttgtc aaagcagtga
      601 ttctgaacca gaatttaaaa taagacattg tttagtgaca aagcgtgcta atcagtgttc
      661 actttatttt cagagggtcg cagtaaatga tgatctaatg acaaagtttg t
//
LOCUS       KCLJ01003773             494 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 420923cal ultra-conserved element locus
            uce-4254, sequence.
ACCESSION   KCLJ01003773
VERSION     KCLJ01003773.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 494)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 494)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..494
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="420923cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>494
                     /note="ultra-conserved element locus uce-4254"
BASE COUNT          191 a           82 c           70 g          151 t
ORIGIN      
        1 atttaaatag caagtcattt tgatattata cttcaaaagt aaactaattt agtcaactaa
       61 tcttgtttat ttcctaaata ttgttagttt ctatcagtcc gatgaacact tacataacaa
      121 gcattaaaaa gatacattta gcagctacaa ctgttaacat aacaaaggct acagaatcca
      181 gaggttattg cattctccca aaagtactta aataatagcc taaaatctga agaattactt
      241 taatacttca ataaaaataa cccaattcaa aacattttca aggaaacata gctccttgct
      301 ctaggctacc gaataatggc tgaaagaaag tatatagctt gtcacttctg attagagaac
      361 tgtgcctctg tgctttgaat gagaggcatg tctggtaata ggaagtgcag atattaaatt
      421 taataaaata acgtggaata cgatatatat gaaacttgac caagtatagc acaaaatgta
      481 acatacatta ccct
//
LOCUS       KCLJ01003774             658 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 421030cal ultra-conserved element locus
            uce-7530, sequence.
ACCESSION   KCLJ01003774
VERSION     KCLJ01003774.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 658)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 658)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..658
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="421030cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>658
                     /note="ultra-conserved element locus uce-7530"
BASE COUNT          206 a          126 c          120 g          206 t
ORIGIN      
        1 tttgtgttat aaccatttta acatgttcaa atcaaaggtt ttttggtttt gaagatgtga
       61 ttgccaatta tttttgcact agtacacata aacaggaagg acagattctt aggtatgagt
      121 tatatattcc tgtacaaaat aattgtatat tctatgaaga gtgattcttt ttctagagaa
      181 atatacaaca acacaaggga aatcttgtac cagcagcata actgaagtgg caagacacaa
      241 tattagaaaa acagagctac tttcattact gtgatgctgt gtgtcagaat gtctctcctt
      301 aatgaacctg tttgcaataa gactccgggt gcaaagaggc tatttagaga gcctattgtg
      361 tctgtagtga gtctttcaaa tatcttccta ccattagaca tgccgcattg accaattctg
      421 tcctgattgc tgttcttttt agtatcaagg gacattcttg cccagacaga ccgatggatc
      481 agaaactgca cttcataaaa tgtttacact gtacacacat tcacacagtg atacaagcaa
      541 cagagtccca gatcacacag cacgttgaat gtgccagtgt catctctagg cttatgactt
      601 tccaatacct acaaaaggat ttgggttaaa ctgctgcttg cctgtcattc taacaaaa
//
LOCUS       KCLJ01003775             779 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 421139cal ultra-conserved element locus
            uce-389, sequence.
ACCESSION   KCLJ01003775
VERSION     KCLJ01003775.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 779)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 779)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..779
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="421139cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>779
                     /note="ultra-conserved element locus uce-389"
BASE COUNT          225 a          144 c          171 g          239 t
ORIGIN      
        1 ttctcgcact ttgggattaa acgcaattaa agtgaggagt tgttttacat gaattgcata
       61 cgggacagca tttctatggc tgctttccaa aggcagaatt ttctagtctc attttaccca
      121 ttttacatgc aggataaaga cccacccctg aacccagaag gggaaggctc agaagtgatt
      181 gtctcgaagc ctggaaatgg aagacaggat ttcttttctt tcaacctgtg ttttcagtca
      241 attaaaattt gtactcaggg cttttcagtt tgaagccacc cctgtgtctg tgatgagcaa
      301 tccttcttgt ttgtgcagtc attcattatc tccattacca agaggagaat agaggacaat
      361 tacattgttt ggacgaatca gagtgttagg aggaatattt atcatggtgg cagagtgcag
      421 cacctgacag cgcacgattg atggccagaa atgagtgtga gtggccaaag cagtctcata
      481 tgatgcaaat tactgactgt ggattccaat ttatcctgtt catttttctt gcctttgctg
      541 aagactatta gtggtttttg aagcagtgaa ggggtcatta ctaatgtggg ctagaagcag
      601 gagggggaag gaggggaaaa gccttctgta attacacagc cttcaagaaa aggctgcagg
      661 cctagccaaa aaagtgtcaa cacttagcaa tcagaaaaat ttattttctt tttatcctta
      721 acccatatta actcaacatt atcatctttc tttgttaata tttgcagaat attaaaagc
//
LOCUS       KCLJ01003776             567 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 421253cal ultra-conserved element locus
            uce-4889, sequence.
ACCESSION   KCLJ01003776
VERSION     KCLJ01003776.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 567)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 567)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..567
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="421253cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>567
                     /note="ultra-conserved element locus uce-4889"
BASE COUNT          172 a          120 c          113 g          162 t
ORIGIN      
        1 gtaggtctag gaaacagaac aatgacagga ggatcattgc gagacaacca atgtgcagaa
       61 ttgtagccaa atctgaattc accaaagctg aaatagccac aaccaactgt ccatagcctt
      121 gtctacaatg gctttaaaca aaaaatataa agagccatgg acagtttcct tacccctgtc
      181 cagaatttga tgtaaacaac atccatagaa actgggattg ttaagaaagt ttatccatat
      241 atctggatag caataaaaag cgtttcctag gaaactgtaa aaacctgtac caagcagtgt
      301 acagccaagc cgagaggaac attaggttga tttatatttt caaggtacaa ctttgcatga
      361 tctctttctg atcctgtgat aatgtacaag gagagcacgt gtgaaggtca gggctttgct
      421 tgcttgcttt cttgtctgaa atgtctcttg tgtaactcat tggtcttttc aattctcctt
      481 tgcaataaca gggcattacc gctccctgtg tctgtccttc ctggtcatgc caaggctgca
      541 tcagtaattt ccttctgctg ccaaaga
//
LOCUS       KCLJ01003777             721 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 421360cal ultra-conserved element locus
            uce-2485, sequence.
ACCESSION   KCLJ01003777
VERSION     KCLJ01003777.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 721)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 721)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..721
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="421360cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>721
                     /note="ultra-conserved element locus uce-2485"
BASE COUNT          254 a          133 c          140 g          194 t
ORIGIN      
        1 catcttaaac tcacaaacta aagagagatg agtgaccttt tgactaactc cgggttttta
       61 aagactgact caatttccca tatactgtgg tgtcaagtga aagactagtg gtgtcctaaa
      121 cgaaagccaa agtcatcaca aaatagcttt tcaaaataaa gcctaggaga agagagagga
      181 agtgatatcg gacttgcata tgcaagacac tctgtatatt tcaaagtttt agcaagtcta
      241 gcacaagatg tccaaatgtt ttctctggct gtatcttcag aggctaaact gtgattaata
      301 gcattgaaag aaccctttga agcaggattg gtgacatcaa agccctaatc catgggtggc
      361 aggattttta taatgagtgg gaagcatttt aacacatttc aaaggattta cagcatgaat
      421 aaacaatagg cctctgcaga tgtaccacac acctttcaga accagaacac ataaataagt
      481 gtctatttta atttaaatgt aaataaagtg ttaacacttc tttcagatgc taaatgactt
      541 gtttgcatca actccgtgtt tagctgttag ctttacagaa aggcagtaac tctaaacagt
      601 cttcggagtt ttgctgcatt acataactag taaggcacga tgggaaaaac aaaaagcaag
      661 aacaccaaat cgccggtaaa gcaaacgctg gtaataattc cctaagagag cagagcaaat
      721 c
//
LOCUS       KCLJ01003778             575 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 421473cal ultra-conserved element locus
            uce-4699, sequence.
ACCESSION   KCLJ01003778
VERSION     KCLJ01003778.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 575)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 575)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..575
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="421473cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>575
                     /note="ultra-conserved element locus uce-4699"
BASE COUNT          167 a          136 c          103 g          169 t
ORIGIN      
        1 atcaatcatc actgattaag taattatggt accctacatg ttatcactta tcctttatct
       61 gtgtacatta cagaccattt ttttgcattc aaaaataaaa atccacccca ctgaactgca
      121 atccagctcc aggttgtaaa acagagctct acattactat caacctttaa gcgccacaac
      181 ttttttttaa caaaagcaat tggtttccaa cagtctggat aataagtctt ttgacctgca
      241 ttcttctttg acccattaag gtcacccctg tgctcgggca tatagctgac ttaggaaatg
      301 cctgcaagtc ctgcatttca tctcctgccc actcaaaata aagctttctt taaatgtgtc
      361 tgtacgggtc cccgaagacc agggaggcat ccctgtagtg ggcaatggag ggacagaagc
      421 ttctgccttt attaatgaat gcagaccatt atgagtctgg ctggctcctg cactgttccc
      481 agaagcatat actgtacgtg acttaaaatg ctagaatatt gacacaaagc gagctgggca
      541 cccctaagga aaattactcc ttggatataa tgtag
//
LOCUS       KCLJ01003779             608 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 421683cal ultra-conserved element locus
            uce-463, sequence.
ACCESSION   KCLJ01003779
VERSION     KCLJ01003779.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 608)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 608)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..608
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="421683cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>608
                     /note="ultra-conserved element locus uce-463"
BASE COUNT          158 a          143 c          134 g          173 t
ORIGIN      
        1 gctggctctc caggctgcag gctgctttat aaggatgaat gaagatgaaa aggaagacaa
       61 atagaagtga atgaggcact gctggccgtg attcatgaga gcccgcaaag cctgttagcc
      121 tccgcctggc tcccttcgcc gggaataatg gatagttaca gtgtggatgg tgacattgtc
      181 aaaccatcag gaattgctga ttatggtgct aaatattgat ctctgcttca catgtgtcaa
      241 aattctttct tcccttaatt agaacttccc taagcaccct ccaagaacaa accgaataga
      301 tcagatctcc gtgaaaggga gtgtgatacc agaatataat tgtgacctct tgtcttcctc
      361 ctctctctgg agttttgaga tgacttcagc tgtctatcct gcccttccca gcacatgtga
      421 taatcatact catttttccc aatctaacca taggaagatt tttccaaggc tgtgcttttc
      481 atcatttcaa cccaccgggg ctgcagtcag atggcagcga aacttaaagt gccagaaggt
      541 gcctttttct atttgtttgt ttcatggtac actgcaccag gcaatgacct gtggcaggag
      601 tgtcacac
//
LOCUS       KCLJ01003780             768 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 421791cal ultra-conserved element locus
            uce-4659, sequence.
ACCESSION   KCLJ01003780
VERSION     KCLJ01003780.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 768)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 768)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..768
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="421791cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>768
                     /note="ultra-conserved element locus uce-4659"
BASE COUNT          273 a          147 c          132 g          216 t
ORIGIN      
        1 aaaacttggg taaagaaata catccactta cacacggtgc atgtggttaa acgaagagaa
       61 ctgtcacttt tccccttaaa agttctaagt gttcatttaa gaactggact ctgcagaatg
      121 gaatcttaac ttccaccact gcaagatgga gacagttggt tggaaatagc tcttttgaaa
      181 cacagaaact aaaggttacc tgctacagtt ttactaaaaa ttgtacaaaa ttgccccttt
      241 tttcagatag aaacagttct tatgaccaga attcctataa gacaatagaa aatacatcaa
      301 cagaacgata gataaatcca tccttggaag caattgttat gtgttcactt acagatgctg
      361 tgctaggaca tggaccgcca acactggatt aaccttgcct attagctatg tttctgggag
      421 gaagagcaag tacacggttc acaaatatac caaataacaa ccaaatatac caaatttcaa
      481 cctgatggat gcaagaatac cactttttga acaaatattg agcagaataa acaggtttat
      541 cccctttggc tccacgactg aaatgaaatt aaaaactgga acaatgaaac agcattttct
      601 ctggtttgtg ttttttgttc ttttctttta aacaaagcat ttaagacaac tttaaaaagc
      661 aatcttacct gattagtgtt cttctgccat aggcacaggg accagagaac cgacaaagga
      721 ttacagaaat aaagctaatt cactagtgat taatgtatcc agtgaaac
//
LOCUS       KCLJ01003781             534 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 421901cal ultra-conserved element locus
            uce-6907, sequence.
ACCESSION   KCLJ01003781
VERSION     KCLJ01003781.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 534)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 534)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..534
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="421901cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>534
                     /note="ultra-conserved element locus uce-6907"
BASE COUNT          159 a           94 c          106 g          175 t
ORIGIN      
        1 acaccttgta gctgattttg tagcatgaca gcaatcccta gcagagtttc cttgcaagag
       61 atatgttgct atttttgata tgcagcccaa atgaagtctc tgaaggagta tctgtctttt
      121 gctaacagcc atcattttta tataaattcg gaggtattca tattatgtct tcatcttcta
      181 tatctcaact agtaacaata tcacaactac tccctcctga caactatatt catttctcat
      241 taaagatatt tcatgtttta ttcaggaatt taaatgaagc tatcagagcc tgtaatagca
      301 acagtttggg ataattgtat ctcattgatg gcagcctcaa gagttctaat taatatatat
      361 ttagctccct ggttgtcttt agaccaaacg cctcaatatg aaagactggg agaggcgata
      421 aggggagggg gaagggaaga ggctccaaaa tttttgaaat tcggggagga aaatctgtgt
      481 tgtgagaagg aactgtgtgc tctgggattc tttcgttcaa tccaaaataa cttt
//
LOCUS       KCLJ01003782             595 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 422009cal ultra-conserved element locus
            uce-2864, sequence.
ACCESSION   KCLJ01003782
VERSION     KCLJ01003782.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 595)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 595)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..595
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="422009cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>595
                     /note="ultra-conserved element locus uce-2864"
BASE COUNT          203 a           95 c          133 g          164 t
ORIGIN      
        1 gaaataggaa aatacaaatc aaaccattta gctgaaagcg tatgaaaaat aaattagagc
       61 aagcaggata tgcccaggac ctgtctttcc tgtgacctac aggattttaa gagaaaagct
      121 tcagaatttt attggcattg ccactattag gcaaactttt ctttcccttc tccccagcct
      181 ggggtcagct ttaaagagag cattaagtga atggctaatg gaattaaggg tataataata
      241 gaaggatata gtgagacaat tgtattaaca agaaataaat catgttgagt gtaaggtaag
      301 tgttttttaa ttgattgatg ggaaggatgc tccgtagtgc cttcccatct acagtaaaaa
      361 gccagaaggg aaaaagagat aagaaaatta tgcagtgggg agataaatta ttcagagaag
      421 atggccattt tgtgctgaca tcactaatgt gaaaaagcat taaatctttg atactagctg
      481 cgttcctcag aggttgtggt ggctgcacaa gatattagag attacagctt cagcttccct
      541 agatgactta agtggcttcc caaggtgttc catgaagtga aaactcagca atgcc
//
LOCUS       KCLJ01003783             635 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 422118cal ultra-conserved element locus
            uce-4261, sequence.
ACCESSION   KCLJ01003783
VERSION     KCLJ01003783.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 635)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 635)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..635
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="422118cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>635
                     /note="ultra-conserved element locus uce-4261"
BASE COUNT          223 a          131 c          109 g          172 t
ORIGIN      
        1 tttcaaagtt actgcaaatt agtagtcaga ccataccaaa accattttag tcttcaatta
       61 tccacagtgt tttttcaatt agtactaaaa tctaattgac aatagaagaa aggcaagcca
      121 ctgcagtgac aggagatcag cattttacag agtgtgctct aggctcccat agaataggaa
      181 cacaccctac agccaatgaa acatatagag ttagtattcc aaatggaata aaagactttg
      241 gtatggcctc agcacaaaaa agtagcctac agaatttaag aaaagtccca cagaccccag
      301 tccaaggctc tgctgcccac gaaccacttc taagcagaga agccacatca cacagtctga
      361 ctgccatgtt agtttggagt tgccgtctgc aatatggaca caaaaagtac tgtatgttag
      421 attagcaaga taatgcaaca aatcagtttg tacaaattta cagtaattgc atttatattc
      481 ccagcacgtc catgcagtgt ggcttaattg gatttgaggc aattccaatc taatcttaac
      541 aaattcagtt gtaaaatttt tcttatgtga aaagatgctt atttttaaga agacttaaaa
      601 gaccatggca actaccttca gtaccacgcc taaaa
//
LOCUS       KCLJ01003784             763 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 422230cal ultra-conserved element locus
            uce-1823, sequence.
ACCESSION   KCLJ01003784
VERSION     KCLJ01003784.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 763)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 763)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..763
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="422230cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>763
                     /note="ultra-conserved element locus uce-1823"
BASE COUNT          238 a          151 c          152 g          222 t
ORIGIN      
        1 aaatggaacc tgctttcagc actgataaaa tctgtgatga tttttcttta tagcctaagg
       61 agaaaagttg tataagtcta ttgtgtgaag caaatatttt gctgttcaaa acaaataagg
      121 actgaaaaaa catgccaatg aaaattattt ctcagcaatt attactctac tcagttgctg
      181 aggtgaaaaa tggttaaaag acaagaacaa gaactgctct atactttttt gaataaggtt
      241 ccttgcaatg atggtctctc ccagcttttt gcaaggtaca gtagctgcag ctttgtttat
      301 ctggccccta cacaatattg tcaggatgca tttccatttt ccaagtgact gctgccactg
      361 tgccacaatc tgtgctcatt tctcgagcag ctaaaccctt tgacactgtg gtttttaatt
      421 aaaattacat taaacttaat cagccagaaa gaggctgctg tagaaggcag gtttgattgc
      481 aacctgcaaa gggcgctggg gctgccaact cgctaaagat gtgccggcag atgccaagct
      541 gcttgtgtga gccccatggt cacaaaaatg ctatgagagg tcagttctgt cttcactttt
      601 ttctagcact gtcaccaaac tataacgcgt gacaactctt gataaagccc aagaaagaga
      661 aagaaataca ttgctaatgc agacaatgta tcctattctt ttctcaagaa ttgagggtca
      721 cagaaaacat atttgaaaaa cggcacatga tagcactgta ggt
//
LOCUS       KCLJ01003785             466 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 422340cal ultra-conserved element locus
            uce-4356, sequence.
ACCESSION   KCLJ01003785
VERSION     KCLJ01003785.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 466)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 466)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..466
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="422340cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>466
                     /note="ultra-conserved element locus uce-4356"
BASE COUNT          158 a           93 c          100 g          115 t
ORIGIN      
        1 atgtcataac atctcaaact aaaactcacc ttgaaaaaag tcatggttgc tccatcttca
       61 actgccccat actctatctt tgtctgcttg gccaagtcgt cagcagaatc aataggggac
      121 tccatccgtt ccactgtcag aaaggcggct aggttagcag tgtacgagga aatgatgata
      181 agtgtgaaaa accaccaaat gcctcccact atcctggtgg agagggcttt aggcatgagc
      241 tcagaaccta acgaaaacca ggggagaaag gtgaaacgga tgcacagaaa acaattaata
      301 agcgttcagc actttttgcc acagtgggga aatggaatca ctgtgcttaa gctacaggtt
      361 tagatgtact gcttgtaaaa acacacacaa ctgaaatgca aaataactgg ttaaatttat
      421 aaagacatat cttttttgtg ggaatcaaaa tatagtaatg ggagat
//
LOCUS       KCLJ01003786             563 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 422442cal ultra-conserved element locus
            uce-7298, sequence.
ACCESSION   KCLJ01003786
VERSION     KCLJ01003786.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 563)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 563)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..563
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="422442cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>563
                     /note="ultra-conserved element locus uce-7298"
BASE COUNT          162 a          102 c          131 g          168 t
ORIGIN      
        1 ataagttagc taggatagga attgagggga gtttggtcct ggggtagggc tggtaggtgc
       61 atgtaggcaa aaacaatgct gcatctttaa acaaccttta ataaggtttc tttaactact
      121 gagccaaact ctgagatctc ccctgctgta agccataagt tgcttgtagg cttgttctag
      181 agagtaataa gtattgttgt ttagcaattg tgttgttgaa attcagctcc actatgtctg
      241 acagtattta tctaaaatac tttccctggt gcatgctcaa gttccagtaa accgtgtctt
      301 attgtgcgac cttttcattt tgcagtgaaa agggatcagc tcgtcagata aaagctacaa
      361 gctgaagtac aggaaaaatg cgtgctcaga aaatccgagc atgattgaaa acaagatgtg
      421 ttaaatcaat gcagtttatc gcctgcctat tcctggcaat tgctgttcta agctcattct
      481 gagcacacac tagatgataa aagtatagtg tcacagtgct cactggggtg tgaggccagg
      541 gaaacatgtt tatcagacag gct
//
LOCUS       KCLJ01003787             762 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 422552cal ultra-conserved element locus
            uce-494, sequence.
ACCESSION   KCLJ01003787
VERSION     KCLJ01003787.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 762)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 762)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..762
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="422552cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>762
                     /note="ultra-conserved element locus uce-494"
BASE COUNT          236 a          145 c          138 g          243 t
ORIGIN      
        1 aaatctgtgc ttaatactgg gatttatttt aatgacctac atcagtaatt gacacatcac
       61 taataaaaga cacacagata taagtagaag ctagttttta aagagtatag ctcatggcaa
      121 aaagacacaa aattgaactt tccaagatca gtacttaaca taaaaatttc atcacaatct
      181 ttatcatctt gcagtggttg cagaaaaggc ctaagctctc tccaccttta acttcctaaa
      241 gtcgcctatt ttaccttcaa atctgatgaa gtgtcaaagt catttaccag taatgagttc
      301 tgctgcaaat tttattttgc ttggaattta attaatgggc caaagacttt ccattgtgat
      361 ttgagcaaat gaataataaa tcaagaaagg agatttgtca gggaaggaac atctgtttct
      421 tacaagcgtt acaacatgac tacagctcgg ctgtgcatta ccagcacaaa gacggtagga
      481 gtcctctcct ctgaagctct cttcatttat tgctccactg aaggtgaaca gagagcactc
      541 taatgggcct ctggtgttaa taaaagcttt tcgcttcccc agtttcgctg tagccccttc
      601 cttttgggtg ctactgtcct tagtacatgg tttgttggtc aacgtcagga ttctgcagtg
      661 tcagtgcttt attggatgat taataaggga aagacaaatt cataagcaga aacaatatga
      721 aattgccatc atattagtgt taactgtcat gctttttatt tt
//
LOCUS       KCLJ01003788             527 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 422665cal ultra-conserved element locus
            uce-7058, sequence.
ACCESSION   KCLJ01003788
VERSION     KCLJ01003788.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 527)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 527)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..527
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="422665cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>527
                     /note="ultra-conserved element locus uce-7058"
BASE COUNT          186 a           94 c          104 g          143 t
ORIGIN      
        1 tgggctggtt ttgttagctg caggattttt accactgttg tctgcagaca gcagtatccc
       61 aacatacttc ctgatgttgg cagttgcaga ctgttaccaa ctagcaaatg cttaaacaaa
      121 atcacagttt gttccagaat gataaaatga ccctacaaag tgaattacac tgtgaaatgt
      181 aaaacacagt gtagatgcac aaatgattat ttcattatct ggccaatgta agaacgacag
      241 atacaaattg ttccaatcat agagtgatga aagagtaatg aacaatgggt tcttgaatga
      301 gcacaggaac aaaataatga attgcagttt aaatgaaatc aggagtcaat ggactggatc
      361 acagactgtc cttcagacac aggaattctg cattagttaa acagtgtcat ttggaaaaac
      421 gtcctttaag agaaggaatc taaacgctca gaaagagaca aacatgatga acctgtaccc
      481 tggttttagc aaactgatgt tgatctacca caaattagca tcttcta
//
LOCUS       KCLJ01003789             452 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 422774cal ultra-conserved element locus
            uce-6637, sequence.
ACCESSION   KCLJ01003789
VERSION     KCLJ01003789.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 452)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 452)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..452
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="422774cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>452
                     /note="ultra-conserved element locus uce-6637"
BASE COUNT          132 a           74 c           96 g          150 t
ORIGIN      
        1 tcccagtgaa gaaattcttc ctggtgtcca acctgaactt cctctggtgg agtttgaggc
       61 catttcctct tgtccttact ctgactgcct gggatagtaa agcattcctg aaattgtatt
      121 tctaatttga cattcacaaa tgcaggcttg atttgatgac taagttgtgt ttcctagata
      181 tgacagctat gaggagtatc agcatgaaag gctgaagagg gaagaatacc gcaaagagta
      241 tgaaaaacgg gaatctgaaa gggccaagca aagggagaga cagaggcaga aagcaattgt
      301 aagcactgta aagataactt tcctattgaa gtagatctct gtttcttttc atggattcta
      361 atgctagaat ttatttcatt tgcttacgtg tatttcttaa tattttcatt ttaagcaaat
      421 atgtgttttc ataataattt ctgctttggt gt
//
LOCUS       KCLJ01003790             731 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 422870cal ultra-conserved element locus
            uce-1972, sequence.
ACCESSION   KCLJ01003790
VERSION     KCLJ01003790.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 731)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 731)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..731
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="422870cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>731
                     /note="ultra-conserved element locus uce-1972"
BASE COUNT          216 a          159 c          167 g          189 t
ORIGIN      
        1 ttttaccgga gctttgggct ggaggagggc accagggctc atccatgcag gaaaatggga
       61 tgggaccagg gccccccagt gtccccccgg tgtccccagc ccctgtgcag ttgctgcccg
      121 ggatgcctga gccccctcgc agcctctcac ctcgcagatt gtgcaggagg cagcctgcct
      181 tttaatccaa gccagggatg gagcagggta catcctcaat gcaactaact gtttctaaaa
      241 aaaagaccat ctggtaattg tcttccttta gatcttccct taattatgct tttaattaaa
      301 gatggttcaa ggcattggac cacatgaagg gcagtaatta caaattacat tacaaaccca
      361 acagatgtag ctctatctgc tgggaaaaag gtaccggaat aaaatttgac taaactttag
      421 gataaattaa tccgctgcct tgagaacaga agcacatttt ttattatgca gactctagcc
      481 aggatttaag ttctctgtca tgattgtttt catatttctt tgacatctat tgatttggag
      541 gcagctgcaa ggctttgtca caagagagaa gagcagtcac aatatattag cttgatggca
      601 taactcgaat atgagtagga aggatagaaa catgacaggg agccacgtga ctgagtgatg
      661 ggtctccaac aaaataaaga aattaatttt taataagctt taaaaatacc gcagccagtg
      721 caacagcaag g
//
LOCUS       KCLJ01003791             836 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 422982cal ultra-conserved element locus
            uce-810, sequence.
ACCESSION   KCLJ01003791
VERSION     KCLJ01003791.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 836)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 836)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..836
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="422982cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>836
                     /note="ultra-conserved element locus uce-810"
BASE COUNT          264 a          146 c          154 g          272 t
ORIGIN      
        1 gattagtgct aaaaatgcaa ttcttcaact gctatgagtg ataattaaag atatttgtgc
       61 atgtatagct tataatgatt aacttgtctg cagtcagata aacaaataac ctgcacctgt
      121 aaagacttta tttcctgaag gtaaaacaac tgtttaggaa agatcatgct ggcaaaacag
      181 ctgcttgcat tctggagagg aaacaagttt caacaaacgc caactctggt gttttatcag
      241 ctctatctca ttaactggaa acaaggctta aatgctttgt ttataaatta tgattattcc
      301 tgattgcagc agttactgat agtgccactc atttgcaatg caactctttg aattttttta
      361 attacaattt gaaacaaggc agagaagatt aattaaccca cctggctggc tggcacgtag
      421 tcctggcttg gttctgtcat actcatatac atgttctcac cgtcaaactg caaaggaaat
      481 aatagtaaac attcagcaaa ctcgattttt tagcattgac tgcagttgct ataaaataat
      541 attacagcct ggttttagag acttgtaatt gcatgtgtgc atcttgtctt tgatgttcct
      601 gttgtcatcc ttattgaccc tggatgtcag tgatttggag taattagcgc tctagtaatt
      661 acagctagca aggaagaaat gaatggtttc ctttcatctg caatctgttt taaaacaaaa
      721 tgcctcattt tgtgcaccat gtatacatat tgctgttggt tgcaatgaag tactaagtga
      781 attgcacact tactgagaaa agaaagatga gaatagaatc tgcactaaaa tgcatc
//
LOCUS       KCLJ01003792             461 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 423091cal ultra-conserved element locus
            uce-609, sequence.
ACCESSION   KCLJ01003792
VERSION     KCLJ01003792.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 461)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 461)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..461
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="423091cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>461
                     /note="ultra-conserved element locus uce-609"
BASE COUNT          170 a           96 c           62 g          133 t
ORIGIN      
        1 aaaaaaaaaa gaaatcattt gattttcatt gccctggaga gaattaaata cccccaagga
       61 aaaattctgg tacattctct gcacacattt acatgcagcc agtgaagtaa acatttccat
      121 aattgctcac ttcagaacac gttacccagt tcctaggtac aataactgtc aggagtcaat
      181 gaggaataaa gaattttcct gaatccttgc acataacctg actagcatta ataactccac
      241 agttgtacat aagttaagaa atggattact gccaggcagc aaccttgctc tgaacacttt
      301 gggcataatg cattcttcaa actatcatta acaaaataaa tacatataaa aactcaaggc
      361 tactgataac aaagtttctc tcagttaaaa accatgcaca aactattttt tcttaacctt
      421 ggaaaatata gtaacatatg gcttccattt acttccaatt t
//
LOCUS       KCLJ01003793             639 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 423199cal ultra-conserved element locus
            uce-6643, sequence.
ACCESSION   KCLJ01003793
VERSION     KCLJ01003793.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 639)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 639)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..639
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="423199cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>639
                     /note="ultra-conserved element locus uce-6643"
BASE COUNT          231 a          133 c          106 g          169 t
ORIGIN      
        1 atacagtcca actccacctc aaagcacggt cacttaagca aaaaccagat atgcatttca
       61 actaatcaaa accacagagg ttcaatgagg caatgtataa ccagcaaact gacatcctcc
      121 catggtccat ctgaagttaa gagaaagctc tgcagtgacc ctccagctga ctgaatgtaa
      181 aagagaggag tatgaaatgt gttttgtgaa gcagaacttt atgtcaggtt aaagctagac
      241 acatctcttc cacacagtct aagctcatca attgcgcacc taaaatttta tgggaaagga
      301 tactgtttga tgcagtccac cagtggtcca taacaacagt cattcacagt acactgcaga
      361 caaataagag aagtagtata ctgatgggca actacaaaac cattataaag agtatcttaa
      421 aaacagtaat tactttttct caaaaaggct atcagatgct gttcagattt aatcacagaa
      481 aacaaaaact gcatgctttt attcactata aaagcaagct attaaaaagt gaaatgctcc
      541 cctcacaaat attgcactgc catttatagt gcactctgac ctcactgata gtttatgatg
      601 acagtaatta aatgaggttt aaaatctttt actctgcta
//
LOCUS       KCLJ01003794             680 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 423312cal ultra-conserved element locus
            uce-699, sequence.
ACCESSION   KCLJ01003794
VERSION     KCLJ01003794.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 680)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 680)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..680
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="423312cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>680
                     /note="ultra-conserved element locus uce-699"
BASE COUNT          219 a          152 c          118 g          191 t
ORIGIN      
        1 agaggagagt tgggacacag ccgccacata tatcatcctt tcccatcagt ctctgctcct
       61 ccctgcccct cttcctccta ccagcaaggc attataaaaa tgtcttatct gctttccact
      121 tttttctgaa atcacagtac tgctgaaaaa gaagaggaga gacaaaaagg caataggatg
      181 aacaagaaaa tggcatgtaa aataactata agatattcca ggggaaaatg cacgggctgt
      241 aatcattcaa gatttcagca acttgactct tcacatgctg aagccacatt ttcaaggtct
      301 tatctgccat atggttccct gtttggatga tttattaggt gtagaaagca cactgataaa
      361 ttttactgca tttccctgaa taggcaacct atggtgtcaa taacaaagct caggccgctt
      421 taatgaaaac tgtaagcacc aaagggtaac catttattta tgagtcacta cagtattact
      481 agggcaaaat ttatcttccc ttctcacgca ctctgcagaa accaaatctg gtcaaagaaa
      541 cagcgatcac atccatatgt cagtgactta ctaacatgtc tcctgcacac tcagggcttg
      601 tagccaaata aacagtttcc atttaatgac taaatgtaaa agatgcttta tgtttcaaaa
      661 cttgtgacaa cttgcatatc
//
LOCUS       KCLJ01003795             545 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 423419cal ultra-conserved element locus
            uce-6796, sequence.
ACCESSION   KCLJ01003795
VERSION     KCLJ01003795.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 545)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 545)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..545
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="423419cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>545
                     /note="ultra-conserved element locus uce-6796"
BASE COUNT          177 a           98 c           98 g          172 t
ORIGIN      
        1 tgcatgtgtg tggttcctgt ttatggtgta ggaggccatt gaattatcaa accagtaatt
       61 ttgccattag ttcttcagtt ttcttcttgc atgcatattc tgtggtcaaa tccattagta
      121 agttagagtg ataaacacct ggagtctatc aaaaacaaag agagtcttat tctatatgta
      181 caaccagcct ggcaaacata acgagcaaag actgcataat atagaattca aacaggaata
      241 tgttttttat gatgtgccag cataagggag atcaaagact aaagccaaat aaatagcaac
      301 tgggtaccag caaaggaaac atatttagaa cgtaaagtaa tcagaaacaa acccagtgta
      361 tgccaacacc ctctgaattc aaaaataaca ttttcctcat ttttattaaa ggtttgaagc
      421 ctggcagatt ttattttggt tttcaatcta ctgtttttat gactggaagg gaactttcat
      481 ttctcacaaa taagaatcat ctcctcaccc cattgcctac ttccataggg tgttttttgg
      541 gagtt
//
LOCUS       KCLJ01003796             841 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 423526cal ultra-conserved element locus
            uce-1090, sequence.
ACCESSION   KCLJ01003796
VERSION     KCLJ01003796.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 841)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 841)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..841
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="423526cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>841
                     /note="ultra-conserved element locus uce-1090"
BASE COUNT          246 a          163 c          153 g          279 t
ORIGIN      
        1 gtaaaacatc tgttaggaga acattttatg gtgtttgctg tatgcagcaa catgcctgta
       61 atctcagacc atatttgctg tgccatagtc actttccacc tctcctcact gcacagttct
      121 gatgcccaaa gtcaccttga ctggagcaag tattaatttc tgtcagtggt gttttaaatg
      181 tttgcataga cagagttatc aagtgtgagc agactgtggg tatggccaga gcagctcctc
      241 gcctgcctgt cctttaggag ctctgctcca gctgccttcc cagcagccac tgagcccttc
      301 cttacacata gtctggagtg taaagtcata gtagtattca aaaggttaaa gcagagtgaa
      361 ctgttaattt taatgctttc tctaagcttc agttttaata agcgaaaatg atgttcttat
      421 ttgcagtaaa gtggtgttat aaaattctgt ctgtcaagct cattttaaaa ccatggaaat
      481 aaatgatctg acaaaatcag gctattagac aagtgaagaa gagtgatttc cataaaagta
      541 gaggagctgt tccttaattt cacacttggt agtcttttgg gtcgactaaa tttttaaata
      601 agtgataaaa ttatattagc gcaattgcat ttttatagat ttttttggtc attgtactct
      661 ttttcaattc ttttatttta actcaaacca ttctgctgaa aggttacctc tcaacttatg
      721 ttacctcata acagtttctg ctcacacaac agaactgtag gttcacaaat cctccatata
      781 aaagtatcca gaatgaccac actgacccaa aagtattcta aagtgggaag atcattttat
      841 t
//
LOCUS       KCLJ01003797             755 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 423743cal ultra-conserved element locus
            uce-3651, sequence.
ACCESSION   KCLJ01003797
VERSION     KCLJ01003797.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 755)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 755)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..755
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="423743cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>755
                     /note="ultra-conserved element locus uce-3651"
BASE COUNT          201 a          179 c          173 g          202 t
ORIGIN      
        1 acaaacggca gccgagactt cccggcgcag gcagtgatag atgaggactt ttgctcactc
       61 tcagatgcat ggaagagaat agttttttgt gttaagagat cattacagct tcagccctcc
      121 tactgcacag tttcctctga aatcaggggc aagattaaat ctgttgtagc agagctctct
      181 gtaatggctc tgacagacgt tgtttttcct cggcctcaca tctgggactt aaccagcaga
      241 gcgcttgaaa ccaaccaggt cagctcttta gttgagtttc gtgtctaatc agccaggaag
      301 gctgaggcct caggtcacac atggaaatca ctagagctat ttaagtcgcc agaggttatt
      361 aataaatctc ccactatttc cttaagtaaa taattggagg cccatctttc aaacaagtta
      421 tgtctggcca tgttatggta ccaattttat ccttcctttt ttcccttcac caagcaggaa
      481 gaacaaatct ctggtgacaa caatggcaaa actgtgaatt ataaacatcc atgtgtctct
      541 catttgaatg cctcctcaag tttccttgac agctggggga gagagaggct ctttttccac
      601 cagagcctga gccactgaaa ctgctcttgc accagcagag actttggggg aaagctgcac
      661 agctctggct gaaacaggag ccctgctctc tccattaggt gcagttaggt agccaagttc
      721 aggtccttct ggaccaggga aatgagggga aaagc
//
LOCUS       KCLJ01003798             805 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 423853cal ultra-conserved element locus
            uce-1960, sequence.
ACCESSION   KCLJ01003798
VERSION     KCLJ01003798.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 805)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 805)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..805
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="423853cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>805
                     /note="ultra-conserved element locus uce-1960"
BASE COUNT          241 a          149 c          159 g          256 t
ORIGIN      
        1 gtttgatgat gtaacatcag cgcaaattaa attttttgga taaagatcaa ataaatccct
       61 ttggatggaa agcttgaaac aaggctttgt tgaacatcat taatggaaca ccttctctct
      121 gcaccgatta agctcattga ccacgagcaa gaaggttgct ttttatttcc agcatgtctt
      181 gtttgaaagg gataattgtg cccagcagat cttgtttcta acgcttctta tatatagtga
      241 aatacagtaa tttaacagct tgcttgggga acaagaattt gttccagttc ctgatttaaa
      301 tgtttatgct aattgctatt tattggctca gatgcaaatg ataggttggc caaagtgaaa
      361 ttttatgacg agcaaactcc ccccttttgt gcaaattgaa aaagtgaaac aagaagagga
      421 tgaaatgagc cgaagatggt cttaatggct gctttttaat ggggaagata aaattaagac
      481 tgatttacgt ggccaactcc cctgttttct cttatcagct catttggcag gaaaaatgga
      541 aaagtaattg ttcctctttc aatgtgggtc tcaaaccatt atttattggc tgaaattaat
      601 cgctgtttat ccttcattca cgtggaaacc gctctatcag cattatgaac cccagcaact
      661 caactagtcc cttgcaattt agccaacagc aagcacagat cctgatgagc cgtgccttaa
      721 ttttctgggc tgtgggagtt aatgaagact cctttcttag gtggacatat ttgtatttct
      781 acgacattaa taacaaaggt ccgca
//
LOCUS       KCLJ01003799             693 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 423965cal ultra-conserved element locus
            uce-3893, sequence.
ACCESSION   KCLJ01003799
VERSION     KCLJ01003799.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 693)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 693)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..693
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="423965cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>693
                     /note="ultra-conserved element locus uce-3893"
BASE COUNT          187 a          125 c          157 g          224 t
ORIGIN      
        1 aatattaatt ctttattaat tcatgatcca gctgctaatt agtacctgca caaatgggca
       61 ttacacctta gctctcggag gtgttttggg gactggggtg tgcagaggga gggacttaat
      121 cctctccaac cccgccacag caaagaattt caactttcag acaaacaact tcatttacaa
      181 gtgtgtctct aattagctgc agaattagta aagcagagtt ttccccccat agatcggcca
      241 gagccccggg ggaggctctg gaatggagag aatcgcattt ccaattattt tgttgaattg
      301 ctaatttagt tattgtgcct ggcgtaattg tgatgggtat tgggtgtgca attcaatttg
      361 ttttaaatat ttgtgggaag gctgatcagt aatggagctg acctatttca tggcccaaat
      421 tgagagaaga gactaaaaca aaaaacagct acaaagcccc agtttgtctc agtttttatt
      481 ttgatgtctc tcatccctct taagactgtt gatgcaacaa aaggtttaca ttaaaagatg
      541 atggcacttt gatcttgggc tttggagagc ttacagcttt ggtatgtctt ttcttggcat
      601 tttaatatgg agatatttta ggctaaagag ttttaaacgt gatgctggag ttcagtaggg
      661 tctgtcccct attgtgattc tgatcaactg ctg
//
LOCUS       KCLJ01003800             411 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 424074cal ultra-conserved element locus
            uce-5137, sequence.
ACCESSION   KCLJ01003800
VERSION     KCLJ01003800.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 411)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 411)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..411
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="424074cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>411
                     /note="ultra-conserved element locus uce-5137"
BASE COUNT          145 a           57 c           64 g          145 t
ORIGIN      
        1 tatgaatgct ttggaagact tgagataatt ggaaaaaaca taaattatga tcattctaaa
       61 atgaaccctc tttaaacagc aggatttctc taatactgta catgctttta taattacttt
      121 acttcaatgt aatactttaa tgaagaccag tttaattaaa ttaaatttct ccctagtggt
      181 aactcaatca aaatgcattc taccctcatt atgttatccg taggagtcca acattgtaag
      241 tgctataaga gaagctggtt ttaatgagaa tggtcatgac gtattatact tgagagtcaa
      301 gttacagaaa ctttaaatgc catataaaaa agaactatat attaagatga gagggtagac
      361 atttctgtgc taattggttc tgtttaatat tgtcctttaa attataatgt t
//
LOCUS       KCLJ01003801             664 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 424177cal ultra-conserved element locus
            uce-5477, sequence.
ACCESSION   KCLJ01003801
VERSION     KCLJ01003801.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 664)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 664)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..664
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="424177cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>664
                     /note="ultra-conserved element locus uce-5477"
BASE COUNT          167 a          157 c          168 g          172 t
ORIGIN      
        1 tgtgttcacc tcattgtcat cccagccttg ggatgcagac catgagtcag gagtggttct
       61 gctggaagaa gcagagtgga ttgttacagg tgatctaaat caagtgtaag tgggtggaaa
      121 gacctaggga gctggtatgg tagaagcagc aggggctgtc taattagtcc taaagcaatg
      181 accactaata ctggagcgag gaagtgccct gtagttctga aactctccca aaaagatgac
      241 ttttctcatt gctcaccaca gccatgcacc tgtttggcct aaactggcac ctgcagccga
      301 tggaagggca gatgtatgag atcacggaag acacagccag cagttggcca gtgccaacgg
      361 acgtctcctt atatccttcg gggggcacag ggttagagtt acctgacagg aaaggcaaag
      421 gaaccagtga aggtatggtt ggtgtgtgtc catgttgtga gtcctctgtc tgcctcaaac
      481 tccagccgtg caatctcatg ttccattacc ctcagtgctg ccatcagcag gtgcttctcc
      541 agtctttcat gtctagagct agtagctgtc agtcctgttt ccatatgttt ctaagtttca
      601 tacccctctg atgtccacta atgcaataaa actgtgtgaa accttctcca cacattcaag
      661 gcat
//
LOCUS       KCLJ01003802             978 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 424288cal ultra-conserved element locus
            uce-1357, sequence.
ACCESSION   KCLJ01003802
VERSION     KCLJ01003802.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 978)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 978)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..978
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="424288cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>978
                     /note="ultra-conserved element locus uce-1357"
BASE COUNT          257 a          203 c          197 g          321 t
ORIGIN      
        1 ttattaactg cctcttcttc taccgaagtt ttataaattt ccatggtttt ataaatttcc
       61 tgctgttggt tacagtgtaa tgattctgga cccgatttat ttatgataga gactatcgaa
      121 ctgctctgcc agcagcacag ctaaagggga gagatagatt cacatttcta aaccatcatt
      181 ttgatgtaag gacattagta gcaaactaag gtgcattgat ctggcctgtg gggtcaggat
      241 tagctggaat agccagtgtc tctgctggag tagtggttat tcctgcctct cagctatggc
      301 catttcaaag gtcaggtgcc ctgtacccac ttggctcaga ggaattagac agaacatgag
      361 tctctgggct gattacttaa ccaaagacaa aataatgagt cctaagcaaa tactgactaa
      421 ttgaaagggc tgtaaatcca ttacatattg gtcagggata atcaggagta tttaatcact
      481 tttatctatt caggagcact gaagctgcaa cagcaaagcc ctgaaccttg ccatgtgctt
      541 attattctca tcattatcaa aattacttca cagctgttct ttgctacatc acctcagctg
      601 gagatttact aacctgtaaa atgtttttaa tttggaagtc gagtgagtgc gagtggaggg
      661 tttttctttt agctgtaggg tatctttaca cgagtagtac aggcagacag cgcagggcca
      721 caaataaaca agtttggttt gtagagacct ccatgttaac tgcatttcct cctatgaaat
      781 ttgtgatatc aatttttcct tcctgccttt cttgctcctt gaaagcattt gacacttgct
      841 tattaaacag tcaactgcct cttgcttctc ttgaggaaag tccttctggc tttttgaaat
      901 cccttttcct tgtttctctc tcctgaccct ctccatcctg catgaattaa ggaaatttgc
      961 cgtcacttgt gaggatgg
//
LOCUS       KCLJ01003803             667 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 424402cal ultra-conserved element locus
            uce-7148, sequence.
ACCESSION   KCLJ01003803
VERSION     KCLJ01003803.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 667)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 667)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..667
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="424402cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>667
                     /note="ultra-conserved element locus uce-7148"
BASE COUNT          210 a          122 c          124 g          211 t
ORIGIN      
        1 aactaaaagt ataaaaactt aatcaaatat ttattcaatt tagtaataaa catgggaaca
       61 catttcctac cacatctgca aatgtttaat ctagtgtact ttcttgtgac ctatggcagc
      121 ttaacattat taaaactgat gagacaaatt atatagaagc taaccttgct atacaggttg
      181 cccttggata ttacttagcc tgaccgtggg gctttctgga aacagcaaat gttttataag
      241 tgtcagctca tggctaaatc aatgtttatg cattgatacc tttgaatagc aaacacttgc
      301 tgcctgcaag ctaaacaatg tttttatctg tttgcctatt tctggtcctt caaccacagc
      361 acagggtgtt gcaaatcgca tttagtaaca attatctgct ggaatttcgt gaagaggaaa
      421 gtagcatgat taatgaaaag tgacacacag agattacttt gctttgccag tcgccctggt
      481 gaatgggtga ctctgctgaa ctgaagcctg ttacttttaa cgaggtcatc gtgaatgcta
      541 aatgcttgaa agattagcca ctacaaatgt tccagtacta cccactaatg aactgtaggt
      601 agccagttaa atataatgat acagttttca cctttgaaac aaagggtttt ctgtcaaggt
      661 gtttaga
//
LOCUS       KCLJ01003804             459 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 424514cal ultra-conserved element locus
            uce-7467, sequence.
ACCESSION   KCLJ01003804
VERSION     KCLJ01003804.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 459)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 459)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..459
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="424514cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>459
                     /note="ultra-conserved element locus uce-7467"
BASE COUNT          130 a           99 c           79 g          151 t
ORIGIN      
        1 cttcctgatt ttagcaaagt cctgcctttt tccaagcagt taaaagcaag actgacagct
       61 ttatagatag ggaaatgggc agataagata aacacacaca atacaaactt gtccaaagct
      121 tttacagtct ttctctgcac cacttccagc tcattaaatt acagtattac tatagatttg
      181 cagcaaaatt atcttttatc tcgtcttctt ttaaagctat ttggcatttg ctggtatttt
      241 ctattataaa tctaattgca gattccaaac agacaagggc tcattaagcc ttaattatgc
      301 acatgttgtt ttccacaaac attttcattt ggactgctgt gagctgtaat tgttctgaag
      361 gcactgcagc ctcccattac ccacttccct gggatggcaa aagctactca agtaggtcaa
      421 aatccatttg gagccttggg ttgtgcttct cctgtggga
//
LOCUS       KCLJ01003805             761 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 424615cal ultra-conserved element locus
            uce-266, sequence.
ACCESSION   KCLJ01003805
VERSION     KCLJ01003805.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 761)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 761)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..761
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="424615cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>761
                     /note="ultra-conserved element locus uce-266"
BASE COUNT          234 a          145 c          180 g          202 t
ORIGIN      
        1 caaattaatc tgttaatagg aaagtttgtg gccaaccttc tgtaactcat atctgtgagg
       61 aaacaggttc cccatttgga gagagaaaat ggagctgttt tctcctaggc agagagctgc
      121 ctattgtgta ggtaattact agaaggcctg tgttgacctg gcaatgaggt agtatatcta
      181 aatacctgaa gtgaaggaga aaagcagaaa tgaaagcaga ggccccatct gttaggctat
      241 aatgattgtg ctatttgaag gcagaaaggt ttgtctgagg cagctggttt ctctccaagt
      301 gaccttttag catttctgct tttgctgtct gacagatgtg tcaactcaat aatttcaaaa
      361 gcccctgagt aaataaccaa ttgtgagcaa ggatgaccca aaacgatgac aaaatgggtg
      421 cacacacagc acattacaga acataatacc tactgaaaga acagggaaca ttatcgaagg
      481 ggaaaaacat tttactcttt atttttgagt aaatggtttt cctgctccca gatcagttgt
      541 tttcgaggaa gtgaatggaa ggacattgtg acatgtttgc ccttggagca tgtctgtaag
      601 ctggctgcag gactcaggtg tcatctcaga gctcaaaatg gacttcaact ccctcccttc
      661 actcacagat gggaaaaagg actgaaggcc acagcttgtg aattattggg gaactgcaga
      721 gaggtgactg caatcagcca agacccaacc aagtttaaag t
//
LOCUS       KCLJ01003806             693 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 424725cal ultra-conserved element locus
            uce-7444, sequence.
ACCESSION   KCLJ01003806
VERSION     KCLJ01003806.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 693)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 693)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..693
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="424725cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>693
                     /note="ultra-conserved element locus uce-7444"
BASE COUNT          210 a          124 c          139 g          220 t
ORIGIN      
        1 ttaataagta gacattgcat aaaaatgaca caatccagca gttatttggt aaggccagca
       61 taatcataaa tttaccatac atgcatttcc aaaaatacta acccatattg ttctctctgg
      121 acctgttgca gggatgacta atccagctgc tgaggtctcc ctttatgtgt ttgatggaac
      181 acttggcttg ctagactaca gctgtgtgtt tatgtgcagt gcacacctgc aggggcctga
      241 caaatagctg tagtatgcag agtatacaaa attaccctgg cagtgctgca aataaggaag
      301 tttctgtttt gaagtccata tgtgtgtgag cttgagatgc cagctggggt atttatgttg
      361 cattgcacag atgtaaaact gccaactgat tttataccaa ataaaggcta atctttttat
      421 acatacttgg tgtcagagtt atgaagtggt acataagaat gttctcacga cttagctctt
      481 ttaaaataaa agctgacatt aaaaatgctc aaacgcacaa tatgcataga tgctaaggat
      541 taaacagata tctgctgtag catggtattc taaaggtttt attgttgctg atgtatagtt
      601 tttagctgca cataatcagg acttgattta ttgtatgcac atacactatg ctatatattc
      661 ccaggaagtc acttcagctc tgtggtgaat cca
//
LOCUS       KCLJ01003807             571 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 424837cal ultra-conserved element locus
            uce-4540, sequence.
ACCESSION   KCLJ01003807
VERSION     KCLJ01003807.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 571)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 571)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..571
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="424837cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>571
                     /note="ultra-conserved element locus uce-4540"
BASE COUNT          130 a          168 c          122 g          151 t
ORIGIN      
        1 tatattgcct catttggagc cggattcttg caggcctcca aggagagctc ttggacaaaa
       61 tctgtcaaag cccctcctgc tgagacgagg cgacccgctg ccaggctgtg cctggaggag
      121 agcccctctg tcacctctaa aagaagccac ttcagagtct cccctcattt gcatggggag
      181 atttaatttc catcccttaa atatgacgaa ttgccgagat ttccttcagt taatgctttt
      241 aacagctccc aataaacttc attaatcagg ccagctctag gcccaacgtg cagccgggaa
      301 gcagctaatt tgcctgatga gcccgcgact ttagtgaata aacaggtgga taagccgagg
      361 gttttatggc cttaattaca ctctaatcag ttcagcactt ggcgggcaaa agggaagaaa
      421 agaggtggcg gcagaaagag cctcagcagc caagtccttc ccttcccaca tcagctctgc
      481 tctcctgctt caccctctcc actcctacgc ggctttgtct ctccgctcct tcctcctcct
      541 tttcctctag ctattttgtt tcctgctact c
//
LOCUS       KCLJ01003808             684 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 424943cal ultra-conserved element locus
            uce-6462, sequence.
ACCESSION   KCLJ01003808
VERSION     KCLJ01003808.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 684)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 684)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..684
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="424943cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>684
                     /note="ultra-conserved element locus uce-6462"
BASE COUNT          196 a          111 c          121 g          256 t
ORIGIN      
        1 aatttatatg gccattcttt ttctctctct gtggcattag agggaaagca ataatgaaat
       61 gcataaccta catccacaga aaatataact ggtctattta tgattatgat tcacagtttg
      121 gtcactagaa atatactaca gttctgcagg tttatgcctt cagtggttat ttgttaatgg
      181 caactcctgc acacattttc ccgcaagtct tttagatttc aagagaaaat gtgtccttca
      241 aacaagtagt ttctttgagg gatctttcta taagtggttt ccactgtgta ttgactactc
      301 ataatatttt ctgttatcat cttgtcaggg ttcaattcat tactccattc attattcaat
      361 ttgttgggcc atgagcatct gaataattga aaactgcaga agtattataa attatagtgt
      421 cgccatgaaa tcccagtttt agggtttatg gcttgacttt aagaaatcac tctctgttga
      481 aagttggcat atgaggtctc atctttaaag cagaatctta tcagtgtgat ggtttttaat
      541 atctctatcg ctgcacactt aagaactcag gttgcctgtg tgcattaagt tataacagtt
      601 tatctgtttt ttaattacta ttagtgatgt gggctagaaa gaaattaatt tattttgagg
      661 ttaataagca atttccagtc gtta
//
LOCUS       KCLJ01003809             615 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 425050cal ultra-conserved element locus
            uce-2925, sequence.
ACCESSION   KCLJ01003809
VERSION     KCLJ01003809.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 615)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 615)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..615
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="425050cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>615
                     /note="ultra-conserved element locus uce-2925"
BASE COUNT          176 a          121 c          134 g          184 t
ORIGIN      
        1 ttatgttttc tagtgaactg ctgttaaatc agattttgtt actgtttttt gtttgcgtaa
       61 agaaggctaa attagcaata ataatttcct ttgcctacaa ggcatatatt gaaaagtaca
      121 attcctggag ataaatgaat ggcagaataa ataatttatg ctaatgaaat tactgcaatt
      181 agtagttcca caatgaccct tttaaaagcc acagctgtta atgtcaggaa gtgctgtcac
      241 cgctgacctt atcataagag aaagtgacaa attgaaaatg cagggaagac caatcctcaa
      301 agaggtctgt tcgggaacga ttagtgtttt ctgaaaacca gtgtgaatta caaccagctg
      361 ctctctggct cggcgtggct cccatgctgt gccattttgt taagctccat aacaatagtt
      421 attttgcccc attgagacga gttgtctcgg gccacttcca gctccaccgg aacccactcc
      481 gtccctcact gatttacaaa tgaaactgtt gttagagggc ttttcagggc tgctgagtag
      541 agacctctca taaggatcat gtgtgaggag gttgtctttc actgggaaga gctggcatgt
      601 gtgtcgcaaa caatg
//
LOCUS       KCLJ01003810             477 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 425161cal ultra-conserved element locus
            uce-7580, sequence.
ACCESSION   KCLJ01003810
VERSION     KCLJ01003810.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 477)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 477)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..477
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="425161cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>477
                     /note="ultra-conserved element locus uce-7580"
BASE COUNT          135 a           91 c           89 g          162 t
ORIGIN      
        1 ctgaaattcc aattaaaagc tgtaatggga gctcagggtg gatctgtacc ataagacact
       61 tctaggtcag gcaggaggaa taataataat cccaagtaca tttccttatt taactttttt
      121 attgtgttca gcccgcagct gatttttttt accttgtaac atagtcccta attgagacac
      181 atgaagctca taagaggctt tagacaagat tcagctagcc acaaaagtca ttatctcatt
      241 ttcatttatt aacatgatat ttccaatgga ttaacgaggg tttccctttt gttgcctctg
      301 ctgtggctct agccctaaag gggctgttgc gtttctccat ctcaagtgac ttcttactca
      361 cattagatta cagtaatgta cgtgttccag gaatgacatt tattctactt cttgcattaa
      421 aattccctat ttgaagtagc tgtaattgct ggaaatagga taaagtgaac ttgagtg
//
LOCUS       KCLJ01003811             701 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 425267cal ultra-conserved element locus
            uce-437, sequence.
ACCESSION   KCLJ01003811
VERSION     KCLJ01003811.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 701)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 701)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..701
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="425267cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>701
                     /note="ultra-conserved element locus uce-437"
BASE COUNT          225 a          130 c          125 g          221 t
ORIGIN      
        1 atctgcccat cttccaagcc ctctctctta cccagtgtaa acgttatact gtcataatga
       61 aatcatttcc atgttctata gagtatttag atcaacaaga ccttcactta ttagaaaggg
      121 cagagtagta atgcttttgg caaagccatt attgtggtat tggtattcac tagaaaggac
      181 agaaatagaa caacactggc ctccataaac aattccaatt tgatctgtgt acatgataaa
      241 atcttggctt ctcaatgcat ttaggtgctg tcatagctgt tgttgccaaa taagaatgca
      301 gtgtgatgtt attatagtaa acagcactta agcacagctg gcagaattga tcagggccac
      361 attagagtga acttcagcag atgactgatg cagcagaaac aataactgaa tatgcaaaca
      421 gttcttgcaa tgaatgctct ggggaccatt atttttgact ttgaacaggg aaaaggggca
      481 gatttgtaac ctccttccac acaaaagggt tctgggtatt ctgtaaacat ctgactgccg
      541 tttataatag tagctagtta caaagcaaaa ctctagactc ccttgactat ttacatttca
      601 ttaattatta aagaccataa atatcagata agtttgttta atgtttcaca caggattttt
      661 tttctttgct agaaaagcct tttctcaatt aatgttaatc a
//
LOCUS       KCLJ01003812             438 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 425377cal ultra-conserved element locus
            uce-120, sequence.
ACCESSION   KCLJ01003812
VERSION     KCLJ01003812.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 438)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 438)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..438
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="425377cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>438
                     /note="ultra-conserved element locus uce-120"
BASE COUNT          127 a           82 c           88 g          141 t
ORIGIN      
        1 gtgcaccttt ttccaccttt tgtgtgtgaa gtggcagccg tgaatttaat agagggagaa
       61 tgctgtgatt acttaatggt ttcccagaca gcgatggcct ggagaattaa atttcacatc
      121 tgctttcatg gcgttaatct ctcttctcac atcccgcctg ttatgatgtg cacacgagag
      181 ataatgttta aactgactaa agcaaagtaa accagacaag tctgttattg gctttataat
      241 tacataatta actttttgtc tctaatcgtt atggaggtaa tggtgctgtt aaaatgggct
      301 tctgctgagc agaaactaaa tcaaaaatca ataatccata gaatgccatt agggcctgta
      361 acagcccttg ttggattcgc tcaaattttt gtactgcaaa tgaatttcat taggacgcag
      421 aatgttatct cacaagct
//
LOCUS       KCLJ01003813             619 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 425481cal ultra-conserved element locus
            uce-6360, sequence.
ACCESSION   KCLJ01003813
VERSION     KCLJ01003813.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 619)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 619)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..619
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="425481cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>619
                     /note="ultra-conserved element locus uce-6360"
BASE COUNT          200 a          125 c           98 g          196 t
ORIGIN      
        1 ttaagagcag atgtggcact gtatagtttt ggtattaagt actgccaagg ttcctttcaa
       61 gcaaagaagt atttatctac ttaacacaga acataaccaa cttttgtaag tttcatatat
      121 tacatttatt tcaaaatgct tggcattatt aatccttttt atattgttaa tataaagatt
      181 ctgcttcaaa accccagaaa gtttattttt tgcattgcat gcactgatga actagcctgc
      241 tcagcaagca tttaacagat tagacacttg aacatggttt caggcaatgc tctctcatgt
      301 ttctgcgtat tgcctgataa acacttcaaa gtaaaccgct cataaatatg aaatgaaaag
      361 ccaagaagtc gttatgcaca gctttgagat acaaatctct ttattcccct ctgaagtgga
      421 atttgattga cataatgagt catagatcct gtccagggac acactgcctt atcccctttt
      481 cctcaggaga cagggagtct ttaaagaaat ccacttcaga actttctgac agacagctcc
      541 aggaaagttg aacactacac aaacgtatta ttttgtatta atacctacct taacaatgtc
      601 aaagattgac tccaaagcc
//
LOCUS       KCLJ01003814             618 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 425592cal ultra-conserved element locus
            uce-6946, sequence.
ACCESSION   KCLJ01003814
VERSION     KCLJ01003814.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 618)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 618)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..618
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="425592cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>618
                     /note="ultra-conserved element locus uce-6946"
BASE COUNT          171 a          115 c          122 g          210 t
ORIGIN      
        1 tcaacaaaag agaaatggtc agattggctt tgtatgcctt ttgtcctttc tgttgctctt
       61 ttctagattt agcaaaattc aatggtggtg ctaaaacttt caagggaaaa aacactggta
      121 aaattgtgtt ttctagggaa ggccgtgtgt gtaaatgaga aacagtggat agcagtggag
      181 tgatctcctg tggccctgct agtacaagct ttccccatat tgtctcctgc ttttatatta
      241 attacaactt gcattatcag ctgtgagtct gtagcccggc aaatagaaaa tactgcccct
      301 ggagacatag cttcttgtat ctattttcca tctccttcta ttgtgctcta ctcagtattc
      361 actgcttttc tcctagtaac actgctcttt aacacaatta ggtaagagca agaggagtac
      421 catatttggc tcccaattat tagaactact gggaatagat acatgtgtgc tgttcacttt
      481 ctatgatatc tggcattagt ttaggtcata catgtgtgag atttttatag tgtgtgcacg
      541 tccacaaaat agacaatttt ggcagatatc tcttcagtgt gtttctgcaa agtatattac
      601 taaacttgca agaagaaa
//
LOCUS       KCLJ01003815             448 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 425703cal ultra-conserved element locus
            uce-6229, sequence.
ACCESSION   KCLJ01003815
VERSION     KCLJ01003815.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 448)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 448)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..448
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="425703cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>448
                     /note="ultra-conserved element locus uce-6229"
BASE COUNT          138 a           79 c           79 g          152 t
ORIGIN      
        1 ttcacaatag gaactcatcc gtttgttttc cagatcctaa tgcaaccgtt gccataagaa
       61 cacaaattat gtgtacattt taatgcatct atgcttcata attatgcatg gttgtgtgct
      121 gttataattg acataaaata taaaacaggt caaagagcag ctattaaaac tatttttcat
      181 tttgcttcct gacagctccc gacatcaatg ccgagtgcat ttaataggac catacaggga
      241 atgcaaagat agttatataa tttcaaccgt attaaaccct ccacaacttg caacctaatt
      301 atttcctgca gtgtcttgtt gtgttacttt atttggaatg tgttcggttt cagattaaac
      361 aattgggcta cattaaatta gcatgaaggg ggaaaacttt tggatgtatt tcataggggt
      421 cactttgtta ggttaagaat tatcccag
//
LOCUS       KCLJ01003816             477 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 425808cal ultra-conserved element locus
            uce-1307, sequence.
ACCESSION   KCLJ01003816
VERSION     KCLJ01003816.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 477)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 477)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..477
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="425808cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>477
                     /note="ultra-conserved element locus uce-1307"
BASE COUNT          151 a           72 c           88 g          166 t
ORIGIN      
        1 aagtaattaa atcaatcctt tgtacttacc gtattctcct ctagtgacgg tactagatct
       61 gattatatgc ttcatgcata ttcaaagtac agcactgaca gctctttaat gagctcttac
      121 ttaatcagta cgaacaatgt tcatcttgtt ctttttttcc tcatacatta gagctaggaa
      181 cagttgggga aaaaatgaaa catccagcat tcatttgaaa aatatattgt actttgaaaa
      241 gtgtctaagc tggagaagtt gcattctgcc ctttaaaagt ctgatggaca aattggatta
      301 ctagtattgg attaaataac aaatggttag aggagaaatg agaaaagctc gctgtgatca
      361 caggctttaa tattttttgt tacttataaa gctgaagggg tctttaacca gttattaaag
      421 tcaggattaa tttgtaatgg tccaacttac tagctttaaa agggttttgt tgttgtt
//
LOCUS       KCLJ01003817             405 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 425915cal ultra-conserved element locus
            uce-3585, sequence.
ACCESSION   KCLJ01003817
VERSION     KCLJ01003817.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 405)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 405)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..405
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="425915cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>405
                     /note="ultra-conserved element locus uce-3585"
BASE COUNT          126 a           84 c           61 g          134 t
ORIGIN      
        1 gaactcctta aaggcttgca agaaaatcct ctttcctatg ttgtcattaa taaaagattt
       61 ctatagactt cagcctttca acggtgacat acaatttata gtacacacaa tgcattagcc
      121 catagtgctg ctcaattttt ttactattat gaaaactaat aaattcgtca agctgaatta
      181 agcatacaaa tcagatgagg cataacagat tacatattga agcgccgtgt ctcccgagcc
      241 taaatgaaat ttcaatctaa taattccttc ctggcccggc cataatttgt ttagagatgt
      301 tgttctactt ctttccaagc gctattcaca ccataattaa atgatactca agcttttaac
      361 tttgatttat ttcatttctc cgagctggcg acagtgagag ctgat
//
LOCUS       KCLJ01003818             530 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 426016cal ultra-conserved element locus
            uce-6126, sequence.
ACCESSION   KCLJ01003818
VERSION     KCLJ01003818.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 530)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 530)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..530
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="426016cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>530
                     /note="ultra-conserved element locus uce-6126"
BASE COUNT          151 a          100 c          100 g          179 t
ORIGIN      
        1 tttcttccct tcctctagct ttatttcttt gtttatccct taaatatttc agtctcttat
       61 ttctaatctc agcataacaa agcctgtttt cttttcttgt tccgatgtgt gcctgcctcc
      121 ctatgagctc ccagcacacc tctcatgagg atgtaaaatc taagaaccag atctttgaga
      181 tttcaaaata aaataaaagt aaactctgct ttaaaaacac tttagcagga aagccaggct
      241 aattgtaaat caatgagtct taaaatgcag cattgatctc cagttagaag tttgaagggg
      301 aaagcagtaa ttactgtact gaaggtagac tcttagcaag ttctgggcag aaggaaggct
      361 cattagggca gcacttcaga atctgagtaa ttagtttaaa aagtactttt gtggtgttat
      421 tcccatggct agaaattatt ggagtcttca cagattcata gttctgctct gataaagttt
      481 gatttattat tgtgtttggt ggggaagatc cttcccacac agtgacctgg
//
LOCUS       KCLJ01003819             562 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 426121cal ultra-conserved element locus
            uce-6860, sequence.
ACCESSION   KCLJ01003819
VERSION     KCLJ01003819.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 562)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 562)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..562
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="426121cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>562
                     /note="ultra-conserved element locus uce-6860"
BASE COUNT          175 a          139 c          116 g          132 t
ORIGIN      
        1 cccgactggc tcttcgccac ccacttgccg aacactaccc agtcgatgga agccattaat
       61 cgcactgccc tccctatcag gagactaggg atggatccat tctctatgct tgatggcacc
      121 aaggaccact ttactgcgat caggattcca acgaccacct aatttccaat ctttcaactc
      181 ttttcgacca ggacctcgtt attcggaagc gttacaggaa gaacagctct caacttagga
      241 atcagatctc gttaacgctc tgggaccgct gcaatgtggc actttaagga gtgcatcgat
      301 tacgtctaga ccggcaaaca cagatctaga ggtggccaag tgacattgta ggagctgact
      361 ggaaagtcaa ccaggcccga ccaagagtga ccaagacaga acgattagga taacccacag
      421 gcactcctcg tcataaggcc aacgacacag ataggctggc aaataaaggg tttaatatgt
      481 ggttaaaatg gattttatat atcctcaaaa acgttaacta ggaaatattt aagttataaa
      541 aatcatatta attacataaa ca
//
LOCUS       KCLJ01003820             713 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 426230cal ultra-conserved element locus
            uce-3487, sequence.
ACCESSION   KCLJ01003820
VERSION     KCLJ01003820.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 713)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 713)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..713
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="426230cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>713
                     /note="ultra-conserved element locus uce-3487"
BASE COUNT          214 a          153 c          140 g          206 t
ORIGIN      
        1 tcactcctgg agctgcctga ttctgtccag gctccccacc tcttgtccct gcagtgtgtt
       61 ccagctcatc atcctgtgtg acatgtggca tttagagatc tcgacatctt acgtttctta
      121 aaatgtcctg ggtcacattt aaaacaaggg cagagcgtga catcaggctc cacatcagga
      181 agagctgagc agtagccaag atctgggagc tcattggaaa gcattgtaaa atgttaattt
      241 gccattgtcg acactgaaga cagaaataac acttcagata aacaccacgg agagatggta
      301 gttctaatca aaggcacagc acctcctttc atgcttgcga actagggctc caattatgtt
      361 cactgctctg aagctgaata gagctgcttt gccacacttt ccaaattgag aggagaggca
      421 gcagtagtgt cttccaaggc acagttccaa ataacaatta agcagaagga atcagataag
      481 agccaaacat gaaaatgcag gagttgaaaa taaacttttc attttcttgt aattgcaata
      541 gcttttgttt tgcttctata acatggttgg ttagagactt cttttccttt acacagtgtc
      601 actgtggcgc tagttttctg cattcatttc acagaaaaat atctgaaata aaaaggttta
      661 tgatccttca gtattaaaat tagaaccttc accctaaaat ctctttaaca aat
//
LOCUS       KCLJ01003821             710 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 426338cal ultra-conserved element locus
            uce-1895, sequence.
ACCESSION   KCLJ01003821
VERSION     KCLJ01003821.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 710)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 710)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..710
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="426338cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>710
                     /note="ultra-conserved element locus uce-1895"
BASE COUNT          239 a          123 c          117 g          231 t
ORIGIN      
        1 ttaaatgaaa gataaataaa agtttcaatt taggaacttg agtgtattgt tgtgaaaagc
       61 ctagtcagtt tttcacagga agaagcgtag ggaatcctcg ttctttatgc aaacagtagg
      121 ttttagataa caggatcagg ttcacaattt gcctttaaat aaatatcacc accacacaaa
      181 ctacaaaggt gaaaaaatgc tgtatgttgc attttcctac ctcctgtggc tagggacaga
      241 atgcagacat gccacaataa tgttttttat ttctactgtt caaaccatat taatgagaac
      301 atcattttgg agaactaatt atttctattt gtcttgtgtc acactttcta attcccctat
      361 attagcacag ccaaagcaaa ttaattgctt ttccagcagt tgaaccttgt ccaagaatga
      421 gctcacattc ccttctagtt ctgcagtttc taggagtgca ttgtgtcaaa aatttctctt
      481 gatactaaac atagcccaga gaatatcttt gcagatttct gttgctgctc acttgatgaa
      541 atttataagt ttaagtgacc cactaggaaa gataaagttc ttagctgcaa gattatacat
      601 caaaacagtt aaagtgaaat taaaattaaa tgaatgaatc tcactgaagc aaaaaaagca
      661 gtaattaatg gttcccttaa ttgtcttcat aaaatatttg catgggtcta
//
LOCUS       KCLJ01003822             627 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 426450cal ultra-conserved element locus
            uce-148, sequence.
ACCESSION   KCLJ01003822
VERSION     KCLJ01003822.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 627)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 627)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..627
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="426450cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>627
                     /note="ultra-conserved element locus uce-148"
BASE COUNT          145 a          120 c          142 g          220 t
ORIGIN      
        1 acatctgcgc gttttgatgc gggtcttcaa agttcagtca gtaacccacg gacgccatct
       61 tgttaaaatg tctactgctg tatccaatgc tcatgccctt gagggtctct ctctcttttt
      121 ttttttaaat ttccattatt gttataaaga acattgtgac tttaatatta gcattttgct
      181 ttcaacagca attagcaatc tcttggtttg ctgtttggta aagcatctgt taatgaggtc
      241 atctagttta aaatcccagc tactggaaaa taacagggag gaggtcaaat ctatcatttt
      301 gtgtatattc tctgctctct tttcagtttt ctaaagaaaa gatatctttg ttatccacaa
      361 taagtcatta tgacccgtta ctggccttct gtattttcta ccaccccaag atacagtaag
      421 ttctttcttg aagtattgaa atatgacagt tcagttaaaa tctttgcgca tctgaggatg
      481 aggaattggt ttcatttttg ttttcggagt ttggagctca gttctagcga ggagtggcgt
      541 ctatggtgga aggggttccc ggggtggtgg acctcggagt agctgctggt ggagtgtcga
      601 tggggctccc ggccccgctg ctgggtg
//
LOCUS       KCLJ01003823             762 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 426558cal ultra-conserved element locus
            uce-5639, sequence.
ACCESSION   KCLJ01003823
VERSION     KCLJ01003823.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 762)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 762)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..762
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="426558cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>762
                     /note="ultra-conserved element locus uce-5639"
BASE COUNT          270 a          135 c          138 g          219 t
ORIGIN      
        1 ccccaaaagt ctaacagaag actgaaggac tggtttgagg atcattaatg ttttcatttc
       61 caaatgagtt taccccagca gaagaaaaat ttaactatga tataaagtct tccacagtaa
      121 cagaacacag agccctaatc aagaaatgga ccatttgttt aaaaacagtc tattgagcat
      181 gctctacctt gcaaatggaa tatgccaagc tctgtcacag atggcaagct ttgacagttc
      241 ccatccgtag cgtcgatact cgacagttca gcacaagatc agtgacattc tgtctcatta
      301 gagccacgct aattatcaca gctagtttca ggggaaacca tgtgttgcaa tggtcaattt
      361 gaaggagtct gtgcatcaac aaactggtaa taaggatcag acaccttatt atatgacagc
      421 atgctgccta tgatctgatt tactgaatca gaggtactga ggcaacactg aagcctgatg
      481 ggttatggaa tcgcatgtac acaatgagta gctgaaatat gctttaaaaa taaagggagc
      541 tatatagaaa caatacaaat ttaaaatggt gaagatataa tacagagttt tttcatttga
      601 cattaagaca tgcagagatg ttagagatct tgtcagccag ttttatcttt aatcaaatca
      661 tataagataa ataattcaaa atgaaaactg taaaattatg gattatgcta aattataatt
      721 cattccatac tctgattttt cagtttcaat aacatgtacc aa
//
LOCUS       KCLJ01003824             650 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 426663cal ultra-conserved element locus
            uce-347, sequence.
ACCESSION   KCLJ01003824
VERSION     KCLJ01003824.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 650)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 650)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..650
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="426663cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>650
                     /note="ultra-conserved element locus uce-347"
BASE COUNT          215 a          145 c          140 g          150 t
ORIGIN      
        1 caccttccca atcacaagga accactgcca ctgtcaggaa atcacatctc tgccagctcc
       61 caggctggca gacacatcca tccatacgta gaagcaaccc gtcagctttg tccaacaatt
      121 aaagtcatta aaaacataaa agcaaccgcg agaagtgagg gtgtttgggc ctgttgggag
      181 atccagtgcc ccacatgcct tctgccactg ctgctacagt taagcaaact ttacagccag
      241 tcaagccatc atccaacaga gcctatttgc tgagcaacag tggagctttg tggtttgcct
      301 cacagttgac agtaagttat gagccctttg tgagcacagg ggaaggaaaa cagagatcgg
      361 aatttggcag gaaaatataa tacagaattc tcctgtctat ggaacctgaa tttttgtgaa
      421 aacaatcaag cattgttgaa agaaagaaaa gcaactttga cagatgaaat atagaggggc
      481 cccttttagg aaaacagtaa acaaagcacc attcaggcca ggtccattct gtcatttata
      541 aagatagttt cttctgtgtg gtgagagttt acagcaaaga gttcagattc aacaaatcaa
      601 gtgtaaaatc tcccacagta aaacagctag ctaggaaagg acaggaatgc
//
LOCUS       KCLJ01003825             730 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 426773cal ultra-conserved element locus
            uce-2907, sequence.
ACCESSION   KCLJ01003825
VERSION     KCLJ01003825.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 730)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 730)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..730
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="426773cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>730
                     /note="ultra-conserved element locus uce-2907"
BASE COUNT          211 a          135 c          143 g          241 t
ORIGIN      
        1 ttttgtgtct acagtgatct cacattcctg ttgtaccacc aggtttttcc atgaagcact
       61 gtggactttt ttgttccctt gtttgtttaa ttttgctctt aaattttact gtgatttcat
      121 gccatgtgta gactagagtg ctggaactga aatactgtgc agatgccatg ttaaataaat
      181 cctcttttta tacatacagg tacaacagaa tagctcggga atggactcag aagtatgcga
      241 tgtaattaaa gaaattattg gataacctct acaaataaag ataggggaac tctgaaagag
      301 aaagtccttt tgatttccat ttgactgctt tctatgagcc cacgcctcat cttcccctgt
      361 gcacatgttt acctgataca gcagtgctgc gtgttgtaca tacttggaac aacaaactag
      421 aaatactgta tttccccgta ccaacattga ctcctagcag agaagtgtgt gtgtgaaaag
      481 ctggttcttc agtcataact ttgtgagcct aaaagcattc cttgctgagt taaattggga
      541 aatcaaatag tgttgctgat ccgtgaagga ttttaagtgg aatcctttta aactcataac
      601 agttatgaaa agcaaggtga agaacttgaa gctgtttctg tattcatttt attctgaagg
      661 acctacacct taggtaaatg ttatgaccaa tgagaaactg tacccacatc ctgtgtttaa
      721 ggtctaagtt
//
LOCUS       KCLJ01003826             561 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 426860cal ultra-conserved element locus
            uce-7276, sequence.
ACCESSION   KCLJ01003826
VERSION     KCLJ01003826.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 561)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 561)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..561
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="426860cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>561
                     /note="ultra-conserved element locus uce-7276"
BASE COUNT          190 a           88 c          104 g          179 t
ORIGIN      
        1 aagagaaagc ttcagtataa agaaacttgg aaatccgtgg atcaacattt gttacataag
       61 taggtttttg aaaatgagtc attctctggt ataaaataca gcagagtaac ccccatttca
      121 caagatcatt ctttttgtgt ttatggttta tttcttgcat caatgagtca taagatgcaa
      181 gaaattaatt taaggcttga aagctaaaag gaagagaagc tatgtgtagt acagattctt
      241 gtatctaact acataacata ttttctttcc acaggaggta gttatgacaa attagaagtc
      301 tgaaaatttt ctgatggtgt aaaggctcca gctgtcacta gggagatagt gatcagattt
      361 catagctgca tggtcccatg gcaccactaa gagttccata tggtcatcca aatgtttcaa
      421 ctaaacccaa ttccaccatg gcttttgctt ttagaaaaat aaaattctcc ttagtagaaa
      481 tttctcataa tgccgctaat aaacaaaact ttcttgattt ggtagaaaat aattgtttca
      541 ggttgaagtg ggtagaaata g
//
LOCUS       KCLJ01003827             612 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 426970cal ultra-conserved element locus
            uce-1167, sequence.
ACCESSION   KCLJ01003827
VERSION     KCLJ01003827.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 612)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 612)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..612
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="426970cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>612
                     /note="ultra-conserved element locus uce-1167"
BASE COUNT          203 a          102 c          100 g          207 t
ORIGIN      
        1 atttatgaac caaagccttc tttccataaa ttttagccaa agaggtcatt ccatgcaacc
       61 ctctaaagga aagaggattt ttgaacaatg aaaggagagt ctgtttctta cactttaatg
      121 atttttttgc ttctcataga taggaactgg aactccacac tattagccac aaatggcatt
      181 ttgaaatgac tttttttttt ttgggcaaac ccaaaagaca ttgctaagat ttacattttc
      241 aaatatatgc tgaccttttt ttcctctttc ttttagttca tttgtcatca gtatgtaatt
      301 gaatcaatat atttcctgat caacccaaag attgaataag gtcatgggaa gccatgtgtg
      361 gacattaaaa atcattattt tactcaaaat gagcagagat ggcatagacc attcagagtt
      421 ccaaatgaaa ttctattaga ttctattaca cttttacaat tatagagacg ttccaatatt
      481 acaaggggaa atgaagtcat aataaaaaag cccagaggtg tattacaaag aaatgggcat
      541 actatttttc tagttaaaaa cttgatgaaa ggagctctgc tacttttcag ttgctgagat
      601 gtgaccttgt tc
//
LOCUS       KCLJ01003828             686 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 427078cal ultra-conserved element locus
            uce-3647, sequence.
ACCESSION   KCLJ01003828
VERSION     KCLJ01003828.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 686)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 686)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..686
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="427078cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>686
                     /note="ultra-conserved element locus uce-3647"
BASE COUNT          200 a          119 c          117 g          250 t
ORIGIN      
        1 ttatctgcag tcagttaata tttttgtatg agtagttctt tatgtgctca gaagacgctc
       61 aattgccaga gtttgaaaac acgctagcct tgaaaatagc cctggtacta agaaatagca
      121 ttaaaacacc agcagttgct atggggtgtt ttgtaccttc tagttaatct ttgccagtct
      181 atgtatagat ataatatgat atagtttcat taaacatgta ttataaaaac atttactctt
      241 cactcttttt tgttaggtag aagaagctat ttgtttccta attgattttc tacgttagtt
      301 gttcattgaa tagataagta gtgcctgtga tatttgatta cagagcaagg cacccattta
      361 accttccgtt ctttcctggc caggatttca aatacaatac aacgtacctc ccttaggctc
      421 agtaggatta gactgctagc agtaatccct gatgctatga aatagacctg atagaacttc
      481 aactcacttg tttaggatta tgctcatgaa tttcagtatt aaccctttgg gaacttgtgt
      541 gatttatgct gctatagtag atttatatca aaactttttt aaagaattca cttttgcatg
      601 gtgatcaaag tgtaaaattt acactcctat agcataaatc cccagatttg ttttaattct
      661 aatgttcagg tgccttttgc agttca
//
LOCUS       KCLJ01003829             537 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 427184cal ultra-conserved element locus
            uce-7778, sequence.
ACCESSION   KCLJ01003829
VERSION     KCLJ01003829.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 537)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 537)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..537
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="427184cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>537
                     /note="ultra-conserved element locus uce-7778"
BASE COUNT          189 a           91 c           94 g          163 t
ORIGIN      
        1 ttctaaaact ttcttgaaac atgggtgtgt aaataaatta ttttcctgcc atcaatcaat
       61 gctgctttca gacaactttt acttatttaa taaattactt caataaattt ccaaaggatg
      121 gtagtctgtt tagcccagcc tattaaaagc attaagattt gaacactggc tgttaaaaaa
      181 atggcaatat cacaaagtta aacaaatgcc aaaaaacatt ttccagagta ctgggattgt
      241 aacaatacca ttaatgaggg caaagaggtt ttaatgcaat ttgcacattc taaagtttca
      301 aaaagaggtt ttgagttagt gcattattaa tgttctgaac atctggaact atgtaagagc
      361 cacagacatt gagcaagtgc agggtttccc cactaggtct gatgctggct gatttcctcc
      421 ccagcctttt tagaagtttg agacagtaaa atgacaatat ccagataaga gagaaacatt
      481 ccacagcctt atgtacagaa ccattaggct gttaaaaggt gaacttgaaa ttaaata
//
LOCUS       KCLJ01003830             330 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 427293cal ultra-conserved element locus
            uce-6981, sequence.
ACCESSION   KCLJ01003830
VERSION     KCLJ01003830.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 330)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 330)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..330
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="427293cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>330
                     /note="ultra-conserved element locus uce-6981"
BASE COUNT           97 a           67 c           47 g          119 t
ORIGIN      
        1 ttaagagtgc aaatattctg cagtcactca tgaaaagttt ttaataataa atatctaaca
       61 attaatgggc tggtagctgc agttgtcttc agggcataat atctaatttc cttgcaatgt
      121 ttcatatcct tacttttcat gctgcaacag tctatcatta aaaccaaatg caggtttcta
      181 tcacttttat ttatttttca aatcaactta taaatcagtg ccagaccttg ttacagatga
      241 gttccaataa attatcagct gtggacaaat tctgaatgta ttctctgttt ttttccaccc
      301 ccactatgct cccacccttt gagactggag
//
LOCUS       KCLJ01003831             594 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 427397cal ultra-conserved element locus
            uce-1163, sequence.
ACCESSION   KCLJ01003831
VERSION     KCLJ01003831.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 594)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 594)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..594
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="427397cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>594
                     /note="ultra-conserved element locus uce-1163"
BASE COUNT          180 a          103 c          120 g          191 t
ORIGIN      
        1 ttttcctttc attccatttg acgtttatga gagcatttgg gaaaaaaaat aattataatt
       61 tgggcaaagt aatttttata aataatttaa aattgtttaa tgacttctta tctgaagcct
      121 ttcctatctg gctctaccgt taggaattaa aaatgaagca ggcaagatat cctgacccgc
      181 tccagccttg ctaatgctcc atctacaaca tttctaatta ggcagaaatt catgtacttc
      241 agctaagtgg taatgaaaag tgattcattt gctgaataag agatgagagt gagtgtaatt
      301 agctgactgc ggtttttaat ctttcaacaa ttcaatgtgt ttaaattagt ttcaaagaat
      361 aggagctttc aagtgttgtt acatcaaagt aatcaaggca gccttcaacg gctgagtagc
      421 ctgttctgaa acctttacac ttaataatca tcttcaaacc ctctcgttgg aacagatggg
      481 aaggctcaga ctggttcaat gtatgcagaa ttgtggtggg aaggaagcct tccagggggg
      541 actggggaaa gctaaacctg agtcagtgtt gttatcctag tgcttctcaa tcct
//
LOCUS       KCLJ01003832             305 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 427510cal ultra-conserved element locus
            uce-6552, sequence.
ACCESSION   KCLJ01003832
VERSION     KCLJ01003832.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 305)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 305)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..305
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="427510cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>305
                     /note="ultra-conserved element locus uce-6552"
BASE COUNT           92 a           46 c           62 g          105 t
ORIGIN      
        1 tctttttaaa gtttccaacg agccaggtta aatattctgt aatcggtgta ataatacacc
       61 tggacccgct cagagatatc tgccttttgt actgcgacag gacattaata gtaattattc
      121 tgctttgtaa ttggagcttt aaatactaat tcaaacagcc agaggaaaac caattagtgc
      181 taatttatct ctatgtgttt tggagagcct gtgtctgtca tactgtgaag aaataggttg
      241 gtaattagta cagttgggtg gtagatagaa gtaattatca gattctttca tgttctttaa
      301 aggaa
//
LOCUS       KCLJ01003833             467 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 427615cal ultra-conserved element locus
            uce-3925, sequence.
ACCESSION   KCLJ01003833
VERSION     KCLJ01003833.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 467)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 467)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..467
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="427615cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>467
                     /note="ultra-conserved element locus uce-3925"
BASE COUNT          117 a          113 c          110 g          127 t
ORIGIN      
        1 gacacctttg caagagcttt tatattaaat taaatagggg tgttgtcact gaagggaaac
       61 cagtgcctta gccatggggc ggcagccaag ttcccttttg ggcagagcag agtctcgaag
      121 tctgcttgac atcttgaagc ttaaataacc gtaaggcatt gttactccct ggcagcaaag
      181 tgcctcgtta cgcctgattg agctaattgc tttgaaatag gatatattat ctataattat
      241 agagatcttg gaggagacgg ccagcctttt ctttcatctt ttccaagtgc atcataatgt
      301 cgcgatcaaa ttaatttagg ccacttgaaa tagtgccttc ctttcagccc gactcctccg
      361 accctcaaag agccggggac gcctcggcga ctggagcttg gccatccaaa cagctcctgg
      421 tgaccttccg aggaccagtc caggtccctg aagccttgga agtagtt
//
LOCUS       KCLJ01003834             639 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 427723cal ultra-conserved element locus
            uce-7684, sequence.
ACCESSION   KCLJ01003834
VERSION     KCLJ01003834.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 639)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 639)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..639
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="427723cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>639
                     /note="ultra-conserved element locus uce-7684"
BASE COUNT          159 a          134 c          167 g          179 t
ORIGIN      
        1 aaaggctgtt ctgcacacag ataaagcagg cacacgctac ccactttatt gcaagtgtgg
       61 gtattattag caagtccctc gctcctgtca tttgcccttg cctgtggtat aacatttact
      121 gccaggccat gaagaatcca tatgtccatg tgatctgtca ggccaccaag acgccagggc
      181 ttgtggggta gcataaggat atctgaaggt gacacatgct gtcatttgat gaacagagat
      241 gcagaattct ggcagccact accttggcct tgacaacttg tgatggtgac caggtggggt
      301 gtgttatctt aatagtctgg agctcttgtg aattatttgc tgatagatgt aaacagctgt
      361 tattcttggt aatggaaagc aattagaaac atctgtactc ttggcgatga gtaatgcctc
      421 ctatcttcac tgctcccaag tgccaattgg aaataactac atcatcagga tgggctggca
      481 accctcactg cattatggcc tggtttgtac tgagctgtga agaacaagag gtgaagcgcg
      541 gtggaaggtt tgttgggttt gtttccccct tcaggatgag ggaagcaagg tgctccatag
      601 ctcaggtaac tcagtgttca ggagtggctt ctggaactg
//
LOCUS       KCLJ01003835             853 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 427830cal ultra-conserved element locus
            uce-393, sequence.
ACCESSION   KCLJ01003835
VERSION     KCLJ01003835.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 853)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 853)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..853
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="427830cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>853
                     /note="ultra-conserved element locus uce-393"
BASE COUNT          254 a          169 c          170 g          260 t
ORIGIN      
        1 atttcacatt tactctaaga aagttcatgc taaattgagt ttcactgctg tcagtatctt
       61 tattaatcag aatagaagta tggtgtgttt cccacctttt tgcacaagat caatttttac
      121 agcaagactt cctctttctt ttcttggagc gacatggaga gctatgtacg aggatatcaa
      181 gtcactgact tcaaacagaa gacaaattca ctaaagtgaa aatgattgtg atagttctct
      241 aatttccccc acagtgtatg taaaactgac ttttaaagtg tttagtggat aatggatcat
      301 gtaaggtcag tactagccat agctgttatg gctattattt tctcctttca tgggagggtg
      361 ctcagcaaaa tgagattgtc acgctctttt ttttttgaga ggacagcgac agacagttaa
      421 aagcctcttc atgtaaggat gttatttcat aaagacacca gcactggatt atccccttca
      481 ctttaaactt ctgccagctt gtacaaagag ataaaacaaa atagccccaa tcccaggggt
      541 ggagaagtgc tggccagatc tgcccatgtc cacagctttc attttgatta gtcacatgtg
      601 aggaaaattc acttaggctg agaggtaaat ttaataccag ttatgcccat gctgttcata
      661 tcacaaccat tttcacatga tgccacttaa ttccctaaga agcagaaagg taaatcggtg
      721 gctggccagc taaggtgtca taatgcatta ggaccagggc tcgctgcagg ggataatggt
      781 tctgattgct gttgactcat gtctccacca actgcctcat gtaaaataag tgacatttaa
      841 aaggcatcaa gat
//
LOCUS       KCLJ01003836             639 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 427940cal ultra-conserved element locus
            uce-4465, sequence.
ACCESSION   KCLJ01003836
VERSION     KCLJ01003836.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 639)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 639)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..639
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="427940cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>639
                     /note="ultra-conserved element locus uce-4465"
BASE COUNT          190 a          103 c          141 g          205 t
ORIGIN      
        1 aaatctgttc agtctcacgc ctttgtttta ggttggctaa accctcgacc cttattcttt
       61 gtggggtcac gctcaggcaa ctgggcagtg ctgaatgagt taagtcgctg gctgaagttt
      121 ggcttcatgc aagtaaattt gaggcctggt aggcattagc agggcacagc acatttacag
      181 agcttaatta gtacgcgctg taattgttca tggtctgcca gaaggagtaa tgttcaggaa
      241 aagtggagtc gttcttctgc agtctttagt tttaaaacga taaatcactt gcatatttgt
      301 gcagtgattc aaatggagct gagacctctc catctcaaca tgtggtaaat tgtaaagtca
      361 atgaattgca gatgtagggt acagcagatt ctctaagaaa atgcagaatg aatgggaacg
      421 ggtgatgcta taaatacgta ctaagcttgc tgtgccaaat atgataaact aaagatatta
      481 gcaattttgt tctaaatgta tttattttaa atatccttaa actaagtgta ggggtaccat
      541 gttacttcat ttagtgaggt ttttattaat gttccagaac aataggattc atatggaaat
      601 gcgcgttata gccatattaa tataaattaa ttcatcatg
//
LOCUS       KCLJ01003837             509 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 428048cal ultra-conserved element locus
            uce-2190, sequence.
ACCESSION   KCLJ01003837
VERSION     KCLJ01003837.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 509)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 509)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..509
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="428048cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>509
                     /note="ultra-conserved element locus uce-2190"
BASE COUNT          121 a           89 c          105 g          194 t
ORIGIN      
        1 tcccttctaa aaattgtagc tgaagttgta gtgaaaagaa ctgtgcttct tccctccctg
       61 ttaggtttgc ttgctttgtg gtaagagttt ttgtatgctt tactgtgact gagggctttt
      121 tttcctcctg actggccata cagaaccatg agcacataga agaagtgtac ttggagaata
      181 gctgtggtcc tctgtggagt tgttgccaaa attccttttt cttctgccat tttacttcta
      241 tggttgttga ttatttgtct gaataaatct ggcagctgtt tgctatgttt aatagagcag
      301 aaaggctact ctgaataaag ctatttgaaa atttgtttat atgaagtatt tgtaaatcca
      361 tgaaggtctc ttggcatttc tgtatcgctt gctctgtctt cctgaattca ttctttgatg
      421 caggactttg caggctggca aatttactac aggtatcagc tgtatcagaa tattctttgt
      481 aacagaggtc tcaattctac attttgcat
//
LOCUS       KCLJ01003838             719 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 428159cal ultra-conserved element locus
            uce-276, sequence.
ACCESSION   KCLJ01003838
VERSION     KCLJ01003838.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 719)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 719)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..719
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="428159cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>719
                     /note="ultra-conserved element locus uce-276"
BASE COUNT          230 a          129 c          146 g          214 t
ORIGIN      
        1 aataatccct gagatgctta ttttagtaaa tgaatcagtc acactgtgcc aaggaaggga
       61 gccatctatt accgcgctat aaatgttaaa gaccctattt agagccttta tctctggaca
      121 aaacagagcc atttttgctg atatttgtac gacaataata aaggtacctc actaagttgt
      181 gagtagttgt tacaattgaa atttgcccaa ttcattttca gtggtcatca gggaaattca
      241 tctaaaacaa ccaaaaaaac atagatacgt ttgcatcata ttaataagaa gagaaagcaa
      301 gctagctgcc aattggcagc agagtatgtt ttggtggttt gataaggata ctaaagagtt
      361 tatgatgtga cagatgtttc actacactat tgtgaaatga atagattatg agaagtaatt
      421 agatgtacat tggaatcaat gctgttatca tcgaggcctt cgggcgatgc aatagatgag
      481 agtcatggca gcaggtggtc caatggctcc gagacaggaa gacacaccgc aggagactga
      541 gtgacaggtt tcacagatcc agggggtgag agatctgagc tattgcctgc atttgtaatc
      601 tttactcatg tataaataat aacaactaca ctattgactt catatgctat gtcataccct
      661 cacatgtatg cacgcattct gcaatttttc ccctcagtta aagctattct tttattttc
//
LOCUS       KCLJ01003839             755 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 428268cal ultra-conserved element locus
            uce-5916, sequence.
ACCESSION   KCLJ01003839
VERSION     KCLJ01003839.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 755)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 755)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..755
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="428268cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>755
                     /note="ultra-conserved element locus uce-5916"
BASE COUNT          218 a          136 c          135 g          266 t
ORIGIN      
        1 tagagaagtc ccttatgatt taaataaagt ttgtcatgtt ttacttctat tggcatgtga
       61 attctttaag gataaaatat ctgctaaatt tctctgtttt ctttcacttc tgcttatatg
      121 atttgtggta tgtaatgtaa tcagagtatc attaattttc tgctaaaatg tttctgcata
      181 tggccatgca aaataagtat ctaccatacc atcagttgct taaagaatca aaatgaggat
      241 tttttctaaa gaagatttct ctgaatcttt ccacccacag gctctgttga aggcagtaaa
      301 tagtccattt ttgttaatga agcttcactc atacagctgg gattgtttaa tattttacga
      361 gtgttacttt gttttgctct caacgatctc aggcagttaa ggatttatga atcgtgtttt
      421 tctcagccca tctgcggttt cctatcttcc ctggccttga gaatatgttt aaatttatta
      481 aagcgaagca aaggctcatt atttcaaagg agagccaaag tgacacagtg aattggttat
      541 taatggaaag gcactgccat agggcgattg aaatttaatg atatcctaca agaaaaaaat
      601 gagggtgtca ctttccaaaa agtcatgcta aatgccagcc tttttaaggt cctgccgcta
      661 attttatgcc tgcacacagt aatgttttca aaagcgttta ggaaacacgg accagtgact
      721 gtactgatta tccttttcac cttctcgcct gttcc
//
LOCUS       KCLJ01003840             491 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 428380cal ultra-conserved element locus
            uce-2625, sequence.
ACCESSION   KCLJ01003840
VERSION     KCLJ01003840.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 491)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 491)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..491
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="428380cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>491
                     /note="ultra-conserved element locus uce-2625"
BASE COUNT          182 a           83 c           64 g          162 t
ORIGIN      
        1 aaacacagca aaaattaatt acaattattc atgttcttga aaatgacagt acatgacaag
       61 caagaagggt cactattgct cacttctttt ttaaaacaat ctttgtttac ctagttccca
      121 agtgttaaga gccagtatgg tacatttgca taggataact aacatatacc acaccatttt
      181 cacgtctgca agtacacgtg agtaaccgta attacacgtg acaccaatta ctctattact
      241 ttgtattaaa ttataatgga aaattccact agagaattga agcctaattg catcttaatt
      301 tgcatatttt tgcatattaa ttacatctca gatgaataat aaatttcagc agatttttaa
      361 tttatgcata gacacaaaaa caagtggaga aataatttac aaaaaaatac cagcaactat
      421 tacttagggc attcaactaa ttttgcttag tttagcaaaa caaaacttgg tttgtttaat
      481 atagcatctt t
//
LOCUS       KCLJ01003841             684 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 428488cal ultra-conserved element locus
            uce-700, sequence.
ACCESSION   KCLJ01003841
VERSION     KCLJ01003841.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 684)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 684)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..684
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="428488cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>684
                     /note="ultra-conserved element locus uce-700"
BASE COUNT          185 a          153 c          119 g          227 t
ORIGIN      
        1 tttacctaca caaaagcaga gcaagcaatt gttaatgcat agtctgaata gatttaacta
       61 tgcaatccaa aggctacatt tatttcaaac cctgtggcta aagcccatct ccacctaatt
      121 ttttttcatt catctatggt cagattagca agtcagcact gtcaataaat aaactagaga
      181 agttgtttat ttttatgtac tactgagaac agtgtcgtct tgtggccgtt ctcgtagact
      241 gtgttggttt aacaagcgtc caaccctttt gtcttgttgt tttttgtctt tcctgctccc
      301 tgtccccttg ttcccacagg ctgtgcgttt gtcacatttt ctacaagggc aatggcacag
      361 aatgcaatca aagccatgca ccagtctcag accatggagg tacagtactg tatcatttgc
      421 cctttctttg ttttctttgt gcaaatgatt gcgaatggta aagccatgct ctcctggatc
      481 agatcagaca catgacaatc acagatttaa attttttacc agctcgctct acctgtcttt
      541 gtgaattttt ctcaatcacc taaaagagta taataaggct gctgtgtgat atccaaacac
      601 ggctctcaat cctgttttca gtggcattca gcagaaaata aaaaagctgt gaataccact
      661 cctcagtttc tctgattagt aact
//
LOCUS       KCLJ01003842             801 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 428596cal ultra-conserved element locus
            uce-6782, sequence.
ACCESSION   KCLJ01003842
VERSION     KCLJ01003842.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 801)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 801)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..801
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="428596cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>801
                     /note="ultra-conserved element locus uce-6782"
BASE COUNT          275 a          153 c          129 g          244 t
ORIGIN      
        1 tgtctcctat ttaactctgg gctgtaaaaa aaggaaaatt aaaaaccatt atgagacctc
       61 cgtataatta atcttcagat ggcttgaagc tcaagcatgt aatgtcctca gtatactgtc
      121 tactataaca agtaacagga gggaaaaaaa gatgacatat caatacactt tatccaaggg
      181 aagaaattcc agttgtagca ttaaatataa atacaatagt gtgttggcat aatgtagtaa
      241 ggttctgtac tattaaaggc tttgttctaa agcatatctg tgtacacaat gagatgatga
      301 acacagtgca tcacatagct aaatttaata tatgcagggg tatgatgttt gcaatgcatg
      361 catttcagca ggtcccatta gtgcgccttt cccctccagt gaaaacagaa tgaaccacag
      421 ccccttctgg tttgcataaa gcaaacaaaa ttagatttgc tttgctgaat tgaaacccgc
      481 ttgggattgt gagcctctct cggggacaaa ttacttcaaa caatcccttt gtaccataac
      541 aaaatcaaaa aattcaggcc aatcaacatg gctcaaaacc cttaacacaa gaattaataa
      601 tacaacctag tctattttta ttgcttctga gctacagatc cttgttttaa tataattaca
      661 cttatttgtg gtccacatgt taaataagct tgcatatgtt aactaatgtg acataaaaca
      721 acttttgtaa tttcactatt gctaccagtt ttgttccccc tagagtaaca tccctaacat
      781 aggaaacttt aattgcatta a
//
LOCUS       KCLJ01003843             822 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 428708cal ultra-conserved element locus
            uce-7912, sequence.
ACCESSION   KCLJ01003843
VERSION     KCLJ01003843.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 822)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 822)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..822
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="428708cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>822
                     /note="ultra-conserved element locus uce-7912"
BASE COUNT          245 a          153 c          154 g          270 t
ORIGIN      
        1 aaacagcttt taagggattc cagcactaaa tcctgtatag atagcaagaa atatttactt
       61 gaggaagaaa agctttgcat tttggtacca aaataaagag atttttcttt cccaggcagc
      121 ttgcctttgg tgaattaaca agtcaactgc tgtagttttc agaacttttc taattcctgt
      181 gccagggtac aagtgggcat tgcaatgcta catagcaggt tttattaaag ataataagta
      241 tggaaccagc aattcattgc tagtttttta cttctctaaa tacagttagc acacagagtt
      301 ttcaaagcaa agaatatgct tttctaaaat gtctcttctt ttatgctgtg gctaccacat
      361 ttgtataaac agaaaattgc tccattcatg ctttattagc tcttcttttg taccacagcc
      421 ttgaccccag tcatcatgaa ttgagaaata gtggggaact aatggagaca gatgggaata
      481 tggcttgcca tttactcaaa ttggtaaagt aattaacctc aaggtgctgg tttgcaagaa
      541 aaattgttgg aatatctcgg agcgctggta aacagactcc tgctttaacc acttctgaca
      601 actgcatcat aaactagact tattctgttc aattgacctg tcaacgtctt gagtccaaat
      661 aaagatttgt attacaatgc gcttgctgag aagtgggaga acactactgc tgttcctttt
      721 catatgggtt gctgttctta ccctgctaga taggagctgg aatgtcatgt attcatactt
      781 cagccattat attccttaga aaacttccat tactgattgt gt
//
LOCUS       KCLJ01003844             704 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 428819cal ultra-conserved element locus
            uce-6874, sequence.
ACCESSION   KCLJ01003844
VERSION     KCLJ01003844.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 704)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 704)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..704
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="428819cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>704
                     /note="ultra-conserved element locus uce-6874"
BASE COUNT          182 a          182 c          149 g          191 t
ORIGIN      
        1 aggaaaggac tgtattttag gctgtttgca ataggattca cctcagcaaa tatctgaaac
       61 tggtatttac ttaatgtttt tcaattacat ctctcaaagc agcaattaca caatttttgc
      121 aatatattcc ataaccaaat attcactctt ctgaaatacc aaacaagtct gcacccacat
      181 gcagcactcc agtctgagat cactctactc ccactggtga aatcttaagg ttttggaaaa
      241 gaaaaaccat ctggtttgcc agcagtggca caacgtcaga agcaaagtgc agagattctg
      301 ttttcacccc cgagctcttt ctgtcctgct gctgctacct tatgttcctc cgcatgtgag
      361 acggtttctg agccctcttc tttttggtgt cctcagaggc caggctcttg tgctggttct
      421 gcaagagttg ctctgcccgc tcgctctgag atgaggtagt tgaagtcgag cgctgccact
      481 ctccatcctc cgcgtgctcc gcatggtcac cgctgaacac ggcttcctgg ggttggtctg
      541 caaaacaaca tgccatggga acagctgtgc cagtcttcca tcagcaatca gcagggcttg
      601 agctgaacag gaacgcccta ctctcactca ttttacagtg aagggtgtcc ctagtgaaag
      661 ccaaaaaagc accctgacaa gaaaacaagg cagattattt aggt
//
LOCUS       KCLJ01003845             433 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 428926cal ultra-conserved element locus
            uce-5372, sequence.
ACCESSION   KCLJ01003845
VERSION     KCLJ01003845.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 433)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 433)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..433
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="428926cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>433
                     /note="ultra-conserved element locus uce-5372"
BASE COUNT          148 a           49 c          121 g          115 t
ORIGIN      
        1 aaggacttgg ttgtggggca tttcagcttc tgtctgctgc tttgggttca ctgtacttgg
       61 gaaaatggta gaggagttct gagcatctca ttataaaagg acatagataa atctgaaagg
      121 atagagggaa gggtgacaaa aatgatgtat tgcttgtaga aaaggagact aagggtggat
      181 ataaacagtc tataaatatt tgaaaggtaa taatatggag gagggggagg gattatttac
      241 agtgcttgag acagcataac aaggagcaac ggcttgaaac taaaaaaggc aaaattaaat
      301 tagacactag acactttttt cctaacgagt agtgcaatta gcaatggagt gacctgcata
      361 aggacaaggg ggtaagtgaa gcgtaatcag gagaggtgtt taagagtgtg ttagattatg
      421 atctctagtg att
//
LOCUS       KCLJ01003846             672 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 429250cal ultra-conserved element locus
            uce-6579, sequence.
ACCESSION   KCLJ01003846
VERSION     KCLJ01003846.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 672)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 672)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..672
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="429250cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>672
                     /note="ultra-conserved element locus uce-6579"
BASE COUNT          201 a          134 c          139 g          198 t
ORIGIN      
        1 tttttcagca ccataaaaag ttcacaagtt aggagtaatt gcattagcac gctgagaaaa
       61 gagaagagaa tgcaagaaat cctgattggc gttcctctgt ttaaaaggaa ttattttcca
      121 atacctgagc atgcccagag gagctagtct ctgagcagct gtgaaacaga acctttttac
      181 ttcagggtta gtgcagggag ctcattagca cagcctcaac cctcagctaa acagccttgt
      241 ttgcatattg aagcaataga atgtgaaggt gttaaaaagg aagaattgca gccgctactc
      301 ctgactgaca tgtctatctg ggctcttgtg tttacaagag aataacgaag ctgccccaaa
      361 gcccctactg ggcctgatta ttatgcagag gcttcttaga ttatgtataa ttgatatcca
      421 ttttccctcc agctaaccaa tggcagctct caggagtaat gctcactctc ctgcatctta
      481 ccaagcaagc aaacactgga aattgctatc ttttgctagg cttaataatt tttaaagacc
      541 aaaaattgac atttacattt ttcagaagca cagattattg cactgttggt ggggttttcc
      601 tgctaatagc aatcaaacag tggagatact gtatttaagg gtgagtgggg ctatgttcat
      661 ttctatatat tt
//
LOCUS       KCLJ01003847             728 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 429361cal ultra-conserved element locus
            uce-5098, sequence.
ACCESSION   KCLJ01003847
VERSION     KCLJ01003847.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 728)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 728)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..728
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="429361cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>728
                     /note="ultra-conserved element locus uce-5098"
BASE COUNT          206 a          163 c          153 g          206 t
ORIGIN      
        1 atgcacctga ctttggtaaa aacttcagca agctcctctg ctgcctctgt cgatagtgca
       61 gtttggtctg gacctcattg gattaaaggt cctagaaagt caccccctta ttttaagaga
      121 aacgctactt gtgcgagcag agttagctct atttataccc tgcctctgtt aacaactcag
      181 aaaaagtaaa cttgatttct ttgacaggca cacgcttcct atgtcctggt ggcagtcaga
      241 cagatttgtt gcaagaaaaa aaagctggaa agagttcaaa aggctggaac tggcatggtg
      301 ggacccctgc atgtttctga atgcagggag gccttcttaa cccctttaga actaaagtac
      361 ttccctatgc taagaatggc atttacttct gaaaggggac ttgtctaagt aacaccgcag
      421 tcaggggatt tccccatggc aaggggctac acaatcactt gctaaaagaa acaaataata
      481 ggattgaagc aattaaagcc agttttaaca aaggaagtat aacttattta aacttaggat
      541 caacaaagca gacgtcttca taacttctcc tggggctcct gcgggttttt cttctctttg
      601 gttgggagat ttccatgatg ctaagtttaa ttctgccttc cagtcccacc aggaagatgt
      661 taaaagtgtc cctgaattcc tccacatttt ctgacagcca gatcccattg tacagtgcat
      721 tgctgacc
//
LOCUS       KCLJ01003848             390 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 429473cal ultra-conserved element locus
            uce-2848, sequence.
ACCESSION   KCLJ01003848
VERSION     KCLJ01003848.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 390)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 390)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..390
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="429473cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>390
                     /note="ultra-conserved element locus uce-2848"
BASE COUNT          114 a           86 c           69 g          121 t
ORIGIN      
        1 cagcaactaa attaaaaaat ggtatctgga ataaatttaa agtccaccaa taaagagttt
       61 tctaatgaaa ataaagacaa attagtggaa aattggaacc gagctactct aattttttct
      121 tttctgtttt caaatgtatt ttccagagtg gatcactaaa ggagccagag ccaaacaaag
      181 tcccacctca gcgaccacca cctcaaggtt gtttacagta cattctcgac tgtaatggcg
      241 ttgcagtagg accaaaacaa gtccaggcta cttaatgcaa gcatcccaga ttgtttcagt
      301 gctgacctgg actgtgtttt ttctatcaac tctcccgtct ggttgtttcc ttgttcctgt
      361 ctgtgcgtgt aatttccaac cttcctctgt
//
LOCUS       KCLJ01003849             711 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 429581cal ultra-conserved element locus
            uce-3055, sequence.
ACCESSION   KCLJ01003849
VERSION     KCLJ01003849.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 711)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 711)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..711
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="429581cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>711
                     /note="ultra-conserved element locus uce-3055"
BASE COUNT          253 a          107 c          127 g          224 t
ORIGIN      
        1 aggattaaaa tctaaaacca gatatttcct taataaattt acagaattag aacaactgga
       61 catagtctct gttttcatgg ctgtaaaatg attggattct tgtctcatca aatttacatt
      121 gtaaaatctg aatatagtat gattagacat tattttaaca actacattac aatacaattt
      181 aaaataaaat ggccctttat atcacactaa tatcagtgtt ttaaataaca aaggggacaa
      241 aataaaagaa aggattagca tttagtttca atcagtataa gcaatgctgt accagttggt
      301 gtctcaaaga ttcagaattt tattaatatt ccagagatgc atttgtgttg cctctgggta
      361 cactgaaaag ccacttaaac tgcacttaaa gcagcactac aggatcaaat tgatgtgcat
      421 caaccattta caataaaact tgattattat aaaggcatac atatttgcat aattacatgt
      481 ttgatttttt gataatgcag catacactac aaaatgttgc ttcatgtaga aaggcatcgt
      541 caaaaagcac catctgctgt agtgtttaat gcactgcaat gtttgaaaaa tcctgaaggt
      601 agattgatgc aaatcaaagg agaaagcaat ggagttttgc tagaacaagg ggggagggag
      661 gaggggacac agtacagtgt ggaccttttg tttgtttctc tctggctatt t
//
LOCUS       KCLJ01003850             702 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 429692cal ultra-conserved element locus
            uce-4535, sequence.
ACCESSION   KCLJ01003850
VERSION     KCLJ01003850.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 702)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 702)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..702
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="429692cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>702
                     /note="ultra-conserved element locus uce-4535"
BASE COUNT          192 a          152 c          140 g          218 t
ORIGIN      
        1 tataaaatta tcacggtgtt ggtggagctg gaggctgctc agagcagcct tgagaggcct
       61 ggagatcccc tggaaaagca gcaaagtaag ccacatattg taaagtaaca agaagaattt
      121 ttattattgc ttttgtattt ttcttaccat tttgatcagc tgtacattgt ttataacccc
      181 tcgtttaccg gccccaaata tcattacaac gtctgcacca tgatctatgt ttggttgtta
      241 cccttttaat ggataaaaaa agatttaagt acttcattct gttgcatttt gacagctgtt
      301 agccatcatt tttccattca cctgcattta gcaatcccat aaagggaggc aatctcagaa
      361 ctaacaagag ctgggcactg caaggtgata attctgtatc actttggcct ataaatacct
      421 gccaggctgg gggctgagtc agcagtctgt aacaaagtgg cagccgtgcc cttttatctg
      481 tgtgagtgtt tcacagcaat tggactatca gcccctgcag tgaaaatcca tactatcgat
      541 caaattcttt tgtaggaaat ccctgatgac aaattttatc tgcaccactt tttgattgct
      601 ggtttgatgt aagcgatctc caagggcaga gttaagctcc tggccgttcc acattatcaa
      661 gcaccagctt tatttactga aactacactt gtggtcacca ac
//
LOCUS       KCLJ01003851             363 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 429803cal ultra-conserved element locus
            uce-1334, sequence.
ACCESSION   KCLJ01003851
VERSION     KCLJ01003851.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 363)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 363)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..363
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="429803cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>363
                     /note="ultra-conserved element locus uce-1334"
BASE COUNT          136 a           65 c           55 g          107 t
ORIGIN      
        1 atgtatatta atacagaaat atattgtgaa actgtcctta aacaaacaaa tgagccactt
       61 taaaatatta ccgctataaa tgaccatgac agtagcacag cacatataat aaaaaataac
      121 tactgaagag aagctgctga attactatag taataaacca gatgtgatta ttatcattta
      181 acacagtcat tgaataccat gaatccctga agccattaaa atatttatga ttaaacgttt
      241 ggtattcctt agaacagaac atatagtcag gtactaaggt attattttgg ctaatacatg
      301 ctcgtgctgt gataaaggtc agccagcttc ctggaaagag cacctaacag ctttcctcct
      361 tct
//
LOCUS       KCLJ01003852             573 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 429909cal ultra-conserved element locus
            uce-6724, sequence.
ACCESSION   KCLJ01003852
VERSION     KCLJ01003852.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 573)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 573)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..573
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="429909cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>573
                     /note="ultra-conserved element locus uce-6724"
BASE COUNT          198 a           77 c           82 g          216 t
ORIGIN      
        1 acttcacaaa aataaaaaaa ttggatccaa ttatttgaaa ggttcttgat gtatataaaa
       61 ttccaaacta ttaataaata tatctgataa ataatgatga tattctccat atttctttgt
      121 ttaattctca gttttcttgc aagatcttct tgaagtttgg ttgtaatgga tcattacgtc
      181 cataatgtgc tcaatgttgg agtgaatttt gaacagtttt tcggctgcat actgttttct
      241 tccagataat ttactggatt aaaattagca gtgtgaaaag ctgtagagaa atctaaatgc
      301 ctgccaaatc aaagaaataa tcacattttt atgaatattt aatatcatag tcatggcaaa
      361 taaggcaagt aattagtact taccataaat ttgcaaagta ttattttatg taaatgttac
      421 attctactag tttgatatga attattcatt gtattaccag acagtgacac aaaccagcaa
      481 acactaaaat ctatgtgtta ttagtttact tacctttaat gatattgttt agaggatatt
      541 tttctgagat tactattttt tcccaaacgg gat
//
LOCUS       KCLJ01003853             863 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 430020cal ultra-conserved element locus
            uce-2116, sequence.
ACCESSION   KCLJ01003853
VERSION     KCLJ01003853.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 863)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 863)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..863
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="430020cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>863
                     /note="ultra-conserved element locus uce-2116"
BASE COUNT          228 a          169 c          198 g          268 t
ORIGIN      
        1 agggaaacat ctcacggcgt gccacacaaa atcccaaggg ataacacaag aggccttttt
       61 aggtgctgct ggagcaccag tctgaccagt aacacgcagt tcactgaatc cctaattcca
      121 gttgggaagt tatctgctgt ctctagcagt gaaatcctga ctgataagag aagaggctca
      181 tctgctggta gcagagcctc cagtttatca gtgtctgacc agctcataaa tcagactggt
      241 gtctgttttt attttgtttt atcaaaattt atttctatca ttgtaacagt taatacttta
      301 ataagagaac ttagctggga acattaggaa gttagttaga gacattttgc aggcgctttt
      361 tcccttgtca gtgacaaggt aaggtaatcc tatacacagg ctgctattgt gagatgagaa
      421 actggcctcc ttcactgcca gagaccagat gcacctctct ctatcctaat ctgtaaacga
      481 cttaaaggag ccttatctcg gggctcttct gcttcatttc atgcttgatt tactttaatt
      541 tgtctgatag ggcacaagga tttggagacg gcccatcttt ctgcagaaaa tgttcagatt
      601 tttttttcct tggcattgtt gtgttggggg ttttgacttt ttttatgtgg aggaaatctt
      661 gctccagtgc agcaagctgc ttgagtgtgt ttagatttaa gctaccccag cagaaaagag
      721 tttgtgaagt ggtatgattg tgtgatgggc cacatttaca ttgaaatcac attatacgat
      781 atatctggac tcctgaaggg agcagtgcag tggagcgctt gtgcccacaa gatactttga
      841 aagggctata tatagtggca aca
//
LOCUS       KCLJ01003854             718 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 430130cal ultra-conserved element locus
            uce-4908, sequence.
ACCESSION   KCLJ01003854
VERSION     KCLJ01003854.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 718)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 718)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..718
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="430130cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>718
                     /note="ultra-conserved element locus uce-4908"
BASE COUNT          206 a          121 c          148 g          243 t
ORIGIN      
        1 tttggggtcc ttcagctgtc attgttttcc agcgcagtga gacttgggta ataaactgcc
       61 atatgcaaga attataaact aatgctgcaa gatttatgcc attgtgtgct tttaaaatcc
      121 tgtgctattt ttgctcgtgt tcttcaactg ggatgaaagt gtatctataa cagtatgact
      181 aattatcttt acatgcattt atcactaaat aaacttcaca caagacagca agattgttta
      241 cttaagcagt gtaatactgg gaatggaaga tagctctaga acataggatt acattgccag
      301 aatggcacta tttattaagc tatgataacg ctaatgttcc tttttgatgt atagcatgtg
      361 tgacttcagc tgaacttgta gagagcctta aggatgtttc attgaacatt tagtatggca
      421 gcaagccaga atacatttag cctaaaccca gatgacaggt tggtaatgag gtagtgattg
      481 atgaccactg cttccatatg aaaacctgct tgatatgctg ggggggaaat gcattgctag
      541 ctcttttcat ttcattcctt ctgtattagt tattcttact atggaggagt agcattggct
      601 gctggttatt caatcctgat ttcatttttg gatgagaatt gagtactcag ctgagattgt
      661 ggaagcacag ccccaaatcc taatttcagt ggatttttat tgtcaaaata actgcaat
//
LOCUS       KCLJ01003855             459 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 430238cal ultra-conserved element locus
            uce-3079, sequence.
ACCESSION   KCLJ01003855
VERSION     KCLJ01003855.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 459)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 459)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..459
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="430238cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>459
                     /note="ultra-conserved element locus uce-3079"
BASE COUNT          127 a           90 c          101 g          141 t
ORIGIN      
        1 tgtggctgcg gctctccaat tccgaaacat tttcaaatct atgagccttg aatggacaaa
       61 tactcgctat taatatggga catggacgag tggcaaaaaa gctgaatgga aactgtgcgg
      121 tagctttagg agaaactaac gatgtgcttc agctcttgcc attacaggga aggaaagagg
      181 gggaagcccc ttctgattaa taactagcag ggtaatgttg agggcttttt ctgcccgatt
      241 gcctttttga attagagccg atttcttcac acttcaatag ggcctgtctc ttttaaaatg
      301 actgacagat ttgtttctcc ttttttctct ccctgagact taatgatgta aattttctaa
      361 ttagttaaat cacgttgctt aaaggcctta atgtttaccg ggcaaggaat gatagccgca
      421 ttcggatctc tcgaaataac cagcgaaatt tttacagcg
//
LOCUS       KCLJ01003856             627 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 430346cal ultra-conserved element locus
            uce-2283, sequence.
ACCESSION   KCLJ01003856
VERSION     KCLJ01003856.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 627)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 627)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..627
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="430346cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>627
                     /note="ultra-conserved element locus uce-2283"
BASE COUNT          200 a          112 c          114 g          201 t
ORIGIN      
        1 agcagctcct gctgcttcag agggatgaga aaataaaatc cagagaagtc ttctattttg
       61 gtatacttaa cacatacagt tatctacatg tcctatatat catttaacaa attgctttgc
      121 aattcttaca gggcgtggta taatgactga tttaaaatca ctgcattgct taaactgcat
      181 tgttcttcat caagttgagt catttttatg tgaagtgtca agctctctaa caaataactg
      241 ctgccagaca aatcaagttc ctcatcttaa agctacggct aaatagttta tagctttaat
      301 ctgctcactg aggtgtgcag tctatgacag taattataaa tgcaaggaga aattatagct
      361 gaatgcttta actgcattag gagccatttg atgaacaatc atgattgcct gctcattttc
      421 aacaatagag ggcaagttag tgtcagtgca ttagaggatt ttcagttctg ctctgctctt
      481 tcttccattt accacagaat gtcagttgtc tcctataaag taaaaaaagc gccgcagaag
      541 ctttaaactt gatggttaaa aaaagacaaa ggaggaaaca gagagaaaaa ctgtttatca
      601 ttatgacttt ttttgttttg cacagcc
//
LOCUS       KCLJ01003857             490 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 430456cal ultra-conserved element locus
            uce-5174, sequence.
ACCESSION   KCLJ01003857
VERSION     KCLJ01003857.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 490)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 490)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..490
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="430456cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>490
                     /note="ultra-conserved element locus uce-5174"
BASE COUNT          147 a          102 c          107 g          134 t
ORIGIN      
        1 acttgagtgg tgtacatggg aatgagagct gggtgggact gcaaaaacag gagaaggttt
       61 taatgtgtgc agatcaaaat caaaaccccg aatgtgcaaa gggtcagcac aagcccctgt
      121 aagatcagga aggtctctgg tagttttcaa aatggtggaa agaatgctgc acagatgggc
      181 ttggaagtag agttgtatga gctcttcttc ccttgcaggt gcaagtggga agtacacctc
      241 aggaccaaag aattgtggga tacatttcct gcactcactt gcaagctatt gcaggtactg
      301 tcctaagatt catcttccat ttccaggcct ttgtgcacaa acagtgcaaa cccaaccctt
      361 cacatcttct tctctttgct cccttttaac caaatactgg tattttagca ttgttactca
      421 acagcattta acaacccaag tatcagcata tataaaaaat ttatttgtac gggcataatc
      481 agaagttaca
//
LOCUS       KCLJ01003858             622 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 430559cal ultra-conserved element locus
            uce-3282, sequence.
ACCESSION   KCLJ01003858
VERSION     KCLJ01003858.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 622)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 622)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..622
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="430559cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>622
                     /note="ultra-conserved element locus uce-3282"
BASE COUNT          193 a          124 c          128 g          177 t
ORIGIN      
        1 aacgaacaaa tgtatgcctg taggccagaa tgcagaagct tgggactctc cctccaactt
       61 gcatgaaatt tttacaatga attgtaatag gaggttcaga tgacaaaatt acagtggtgt
      121 agccaagaaa aatacccatg gggctttctg cttcccttgt gcccagcctg aactatcaga
      181 tcagccttct ggactcaaat gcaacactgt caataggaat acatcatctt ttttgtggta
      241 tagaagagct gtcggttgca attcccatta ttccaaggcc aggattttcc attagtgtag
      301 ccacctgctg ggtttctcta ctcaggttta atggagtctg aatttgaatt tatcaccatc
      361 tgtgggaaga caggaaatga gaggagcatc actaattcct ttcttcattt actaagcata
      421 agcataatct ttataaggag ataggcagaa gcagcagtga tcagggagat ggagagaata
      481 ttttaactca tactgacatc agagttccag accaagcaaa atgcagtctg ttcatgagtc
      541 aattccagca acaatttccg atgaccaaaa catgctgata tgggatatta tttcattcca
      601 aggtctctga agacttaata at
//
LOCUS       KCLJ01003859             925 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 430669cal ultra-conserved element locus
            uce-338, sequence.
ACCESSION   KCLJ01003859
VERSION     KCLJ01003859.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 925)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 925)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..925
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="430669cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>925
                     /note="ultra-conserved element locus uce-338"
BASE COUNT          282 a          152 c          174 g          317 t
ORIGIN      
        1 taataataat attgaagcat gacttttctt ctcgctgtta gttcattggg aatggtatct
       61 aatgaagact tgtctaaagg cttgcttgtt tggaactaat taaagacaga tatcctaaat
      121 agaaaaagga tcatgggaat tacattaggt gtctggagac ttgttattct tttggtactc
      181 tgagtagatt gtggaagttg ttagggattc aagaaataag gcaagctaat aaaaagttct
      241 atttttctgg ttattggcca actattgtat ttttgtttgc aataagattt gtgccaacag
      301 gctaggggct tgaataaaac atttaaacat ttgtgcatta acacattatg gtgaaaagag
      361 agtcttgtgc tttcactcgg tgcatttcag ccttcaatta atgtgaaagc actacaatgc
      421 ctatgcaact tctcttgcct agtggtgcac catttatcat tgcagtttta cattgacctt
      481 gacacccact tcattagaat aaagattgtc taccatttag gttacattgt tcctctgcac
      541 agagacccca tgcaaatttc tgttcagata gaagagctgt gagcctgtca gaggtcatct
      601 gcattaaatg attgcagcta ttttccaact gcttcttttc attctactca attcaggcta
      661 ggaggatcaa tcaagccctc tgcctgaaac agtgggactg ctgggaatat aactgttttt
      721 ggtagtagtg gatatgccct aaacagtatt aaatatttaa tataaattca ttaaagggcg
      781 cacaaagtct tcaaaaagat attacatata taggatcact tttcttaaaa aggcagaaca
      841 atgaatacca actgcataat tttttaatgt aggcaaaatt cagttcatga ggttgcttaa
      901 tatttctttc aatgtgttta tttct
//
LOCUS       KCLJ01003860             505 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 430781cal ultra-conserved element locus
            uce-2594, sequence.
ACCESSION   KCLJ01003860
VERSION     KCLJ01003860.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 505)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 505)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..505
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="430781cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>505
                     /note="ultra-conserved element locus uce-2594"
BASE COUNT          124 a          142 c           81 g          158 t
ORIGIN      
        1 ttcaccttcc tctcgtttaa attcatgctc tcactcacac accttgaaaa ctttcctata
       61 catggttatt tcccacttgc cccaccttac ccctcctgtt atcccagccc aagctcttgc
      121 tatccctgtg ctctgctgcc tcacttcttt tccaaggagt tcttaactca ggaccctgag
      181 ctccttacca cttatttcca actctgccca gtgtgatttc tttccattgg ctgcttcctc
      241 tgaggacata attgtgtaca tcctccgtgg atcaggtgga tcgtactttt ccttgggcat
      301 tcctgtagaa accaaaaggc aagtgattaa ctgagatata gaattcttta gaaggtaatt
      361 cccacttatt tcataccgct tttgtaccga atatcgctga ataggaaaca ctgctataaa
      421 aagattgcta aaactggaat ggcagacaac agcctagcgc caaaatttac cagaatgtgt
      481 tgtgtcccac caccttccat ggcta
//
LOCUS       KCLJ01003861             788 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 430885cal ultra-conserved element locus
            uce-1158, sequence.
ACCESSION   KCLJ01003861
VERSION     KCLJ01003861.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 788)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 788)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..788
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="430885cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>788
                     /note="ultra-conserved element locus uce-1158"
BASE COUNT          224 a          166 c          144 g          254 t
ORIGIN      
        1 tttattcagg aaacacagaa atttaaatgc ccactctctc tacctgtagt ttaagacaca
       61 atagcatctt aattattttc tgaaccgttc tgaaaagtac agcttttgta actttttgac
      121 atttcaggtt aaaacgttgc caccagcttg cactatgagc agcctgtaat aacagttaaa
      181 aaagctttct gaactatttg acaagatttc ttagtgctga ggccatatgc tgtagccttt
      241 aagctatttc ttcctatcag tttcattatc acctgcctct gagtctccaa tatcatcagt
      301 aagcacatgc agaatcataa ttatgccatg tacaagttct ttgataacat gtacagtttt
      361 cttcttaatt ctttatcaaa tgcattgatc gtggcatgtg tgcattgatc caggtccacc
      421 atctggctgt gtgtgataag cacagtggca tctttgcatt tccactgtca ttcattgcgc
      481 tacaatttgg ctgcagggga gtagtggctg ggattagccc tgttctgcta cttacttgca
      541 ttttaagttg acacctctac agcggctcag accacattac aaactgaaac acatacgcac
      601 gacttagtga tgtgacactc ctcaataagc ttactccact agctactcaa caatctgtaa
      661 ttggatttgt aggaataaca gcaaaagatt tcctaagaat tgctggggac agaaggtgaa
      721 gttttctcat tattggcaaa aggctaggta tagatcttag gcgattggta ttttcaaaaa
      781 cctgccag
//
LOCUS       KCLJ01003862             731 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 430999cal ultra-conserved element locus
            uce-2277, sequence.
ACCESSION   KCLJ01003862
VERSION     KCLJ01003862.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 731)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 731)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..731
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="430999cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>731
                     /note="ultra-conserved element locus uce-2277"
BASE COUNT          208 a          110 c          148 g          265 t
ORIGIN      
        1 tgtgatgcaa gactttggta ttattaataa gtttttattc tttgtttaag attctctgct
       61 aaaggctgaa gaaagtatct gtgagagctg gtagaggaaa gtctgaattg agggaaatgg
      121 gtcctgtcaa ttattgaggg gtgaaatcta atacctgagc acagtggcaa agcaaataaa
      181 aatggttgca caatagctgg aattttaaac tactttgtct aaatcctcca tctgtctact
      241 tagattaatt cagatgttgt gtatgtggtc taagttgtta ttgagagatg gatttcttac
      301 tgtggcacat attatacctt gcagatactt ggttactttg actatgcttt cacagccatc
      361 tttactgttg aaatcctgtt aaaggtaatg cattgttaat tgatccttgt tagcccaaaa
      421 gcagctttag caataatgtt tgtaactttt tgtttacctt ccagatccta gggtatgcag
      481 attatgtctt cactagtatg tttacatttg agatcatttt gaaggtaaca ggtttttaaa
      541 ggaagcttgt ttaaaaggat tttccttgtg tgtcacctgc caagaaaagg cccttgaagt
      601 gttctttgcc ttttctctaa gctatcaaag ctaaactaaa ctagaggata tttgacagtt
      661 cctcatagtt ttgattggtt agggtgcatg aagaagctga ctttttatca ttacatcagt
      721 tcaataattc a
//
LOCUS       KCLJ01003863             818 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 431110cal ultra-conserved element locus
            uce-5755, sequence.
ACCESSION   KCLJ01003863
VERSION     KCLJ01003863.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 818)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 818)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..818
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="431110cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>818
                     /note="ultra-conserved element locus uce-5755"
BASE COUNT          254 a          140 c          176 g          248 t
ORIGIN      
        1 ttttctaatc cataaaaaag tgagaggttg acatggtcag gagataaacc ataccactat
       61 tttagcagac aggaggatgc aaaacagact gctagggagc tcaagaggct ttatttccta
      121 acgttcattt ttcatcaccg atcctgaaca gaccccaaaa ctcagactaa ttaaagacaa
      181 ataattaagc acattcagac tgtgaaggtt ggcagactcc cactgtattg tgagaccacc
      241 ttggcattta aatggttagg gactatatcc cacaacatca tgctcatctc attgtggtag
      301 agagctcttg agaatgttat tagctgggtg ttcgccttgc cgtttttcca catgaggcag
      361 atgggtaatt acgaagctaa tagtctgatt gagagaaatc agatgcagtg gtttgcccaa
      421 ttagatgata cattagcttc cttctttgta agcagctaat gtgtgaagca aagtggtatt
      481 tttgagggtc agaatcctta aacaagtgcc gagttgcaga ttattgtgtc tctctttttt
      541 tttctaatgg aggaaaagtg ctaagtcttc attactaaaa gcatagaaaa tgcaaatcag
      601 gctctgaaac aaaagagtga agggacaggc gagaatattt ggtgtccaat gtgtcaacct
      661 acaacatcaa ttacattgaa atgcaatgca tgggagccta atcaaggata gtgtaattgt
      721 aataattgca tgcttttgtt ggagagctgc tgccattgtt attgtcaacc atttgttttt
      781 ctctattgtt taaggggaga gtatttaaaa tatatata
//
LOCUS       KCLJ01003864             464 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 431222cal ultra-conserved element locus
            uce-5254, sequence.
ACCESSION   KCLJ01003864
VERSION     KCLJ01003864.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 464)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 464)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..464
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="431222cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>464
                     /note="ultra-conserved element locus uce-5254"
BASE COUNT          108 a           97 c          112 g          147 t
ORIGIN      
        1 ctctggagct cttttgtgga gccagcagcg gggatgcaat cagcaggctg tgacaaaggg
       61 tgcccagtct ttccatgcgt ctcccagctc cctggacctg gagagggcag cagagaaaag
      121 cggagcgtcc ttggctgcga gcgcctggat ggagcaggag cagctgcgtt gcagtatcca
      181 aacacacttc tctgtgagga gggtaattta gagcaattac accgattatt attgcttttc
      241 taattagtgc ttttcctaca gaattagctg agtgtttatt aggagccgct tgttgccaat
      301 agcttaactg cttcagtacc agtttttatc aaacattaga gtggcttctc tgtgtgtaac
      361 tggttttgtt atctggtttc acataaaagc cccaattaaa tattcatttt gctttgttac
      421 atatggcatt aaattttcat gagctgtatg ttctccttga attt
//
LOCUS       KCLJ01003865             500 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 431331cal ultra-conserved element locus
            uce-5219, sequence.
ACCESSION   KCLJ01003865
VERSION     KCLJ01003865.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 500)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 500)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..500
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="431331cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>500
                     /note="ultra-conserved element locus uce-5219"
BASE COUNT          133 a           99 c           90 g          178 t
ORIGIN      
        1 ctccacacta gcctacctct cttctggaag ggtgacaatg gcaggactca gtaaactact
       61 ctttccttct ttcaaaacag ttggtaaagt tctgtttgaa attatgatac tatattaagt
      121 gttttagtgt ttctaatctc tataaaaatg tatctctgtt acagacatgg caaatatgta
      181 tactctgctt cgtgctgtgt caagtggttt acctcatatg attcaggaac tacaaaacca
      241 tatccatgat gagggcctta gagcaaccag caatctttct caggaaaatg tgagtttcct
      301 caggcaactg aaatgatttg attaatgtgt ttgcccttct cctcttagtt gataaaattg
      361 gttctcatca gcatggttta tctatcctga gagctgattg ttgtaatcca gaaacaactg
      421 cagctagata tttctcttgt tgtttgatta atactgcctt ttgttccatg tatgcactga
      481 atttctccag tggcatttgc
//
LOCUS       KCLJ01003866             681 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 431438cal ultra-conserved element locus
            uce-7807, sequence.
ACCESSION   KCLJ01003866
VERSION     KCLJ01003866.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 681)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 681)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..681
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="431438cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>681
                     /note="ultra-conserved element locus uce-7807"
BASE COUNT          244 a          134 c          143 g          160 t
ORIGIN      
        1 gtgatattaa ataactataa aactagaaag ccaaaataac taaatcacct ggcagccaat
       61 ttctgagagt taaaccacaa acccggaaaa tggtggagtg tgttgaaata atgtaaagga
      121 aacccataaa ttcaaacttt atgttctgta aagaacaaat atgaaaaagg catcaaaata
      181 atgaaagatt gtttatgtat tctggcatga aatgggaatg tgttatgaga gagagcgcaa
      241 tggcagagac agatcgacag agctgacagt gtggtattca tcctgcatgg tacagcagac
      301 gtcctgctag tggcagtcga cagcgcaata aatcaagggc tctcgatgct gtacctacag
      361 cttattacat ccaagatgac aaataaataa taatccctgt cacagcggcc ctttgctcaa
      421 ggattgagcc tgaaaccttt tgctcatcac tcctggtctt aagtgaaaat actagaacaa
      481 gggaattgaa ggccacggtt tactgagctc atgctggcca caggaactaa aaccaagcag
      541 gaaaggtcaa gtagcaagaa aggataaata tttaaataat cccagcaaaa ggatggcagc
      601 atttcacagc tgtgaaactg caagagacct caagcctctc aagtcaagtt ccaggttttc
      661 caattacaca ttccccatgt g
//
LOCUS       KCLJ01003867             393 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 431548cal ultra-conserved element locus
            uce-7969, sequence.
ACCESSION   KCLJ01003867
VERSION     KCLJ01003867.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 393)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 393)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..393
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="431548cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>393
                     /note="ultra-conserved element locus uce-7969"
BASE COUNT          102 a          101 c           95 g           95 t
ORIGIN      
        1 agagctgcag ctgccacggg atgtacaggg agattcaatg tgaaaagtgg aagataatgt
       61 gctcacacac taatgggcac tgaactagac acaggctcat ttttcacatc atgtcatctc
      121 taaggtttga ataaaaagta atggcgagaa tgagcctgga tctatctcag acattatcat
      181 ttgcctcctc agttttattt gtgttgactt gtacagtctc aggagctgac agagcgcggg
      241 cccccggatc agagtgagtg ataatacaca gcacattaca ctgctggtga cagctcctgt
      301 tccccgcgct ggcatctgag cgcgcgcatc tccctctgcc agctgacagc agacagcact
      361 caccgagggg acagcctgcc tcttatcatc tca
//
LOCUS       KCLJ01003868             457 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 431654cal ultra-conserved element locus
            uce-932, sequence.
ACCESSION   KCLJ01003868
VERSION     KCLJ01003868.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 457)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 457)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..457
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="431654cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>457
                     /note="ultra-conserved element locus uce-932"
BASE COUNT          138 a           80 c           90 g          149 t
ORIGIN      
        1 acaatttttc catgtcagag gtgcataata tcctggcggt cataaggaat gatgctatta
       61 atcctcttgg gcaatctcca ggtctgatta ttagggaaat aaatttgcat gctgcatatg
      121 agctaggtga atcaccgaga gcacaaatta tatttcctga cagcaagtta gagaatggag
      181 ccacatcgcc tctgaaagct atagaatttc aattcattac atgagattgg ttagaattca
      241 agtctctttt taagttgata ttaagttgag tctgttatct ctgtgaaggc tagtaggttc
      301 ccctgagtat ccacctaatc actacttaaa aaaatcgaaa cgtatagtta gtgtcatgat
      361 ttaggtacca gagccacttt atttatcagt gcagagtgag ataatttcaa tttgaggctc
      421 tgtagccctc atgaatttaa ccattttgaa agctttt
//
LOCUS       KCLJ01003869             694 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 431753cal ultra-conserved element locus
            uce-4236, sequence.
ACCESSION   KCLJ01003869
VERSION     KCLJ01003869.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 694)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 694)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..694
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="431753cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>694
                     /note="ultra-conserved element locus uce-4236"
BASE COUNT          151 a          151 c          159 g          233 t
ORIGIN      
        1 gctttctttc tagtagctgg gataattttt gctgctacag gtgtaacagg ctccttcaga
       61 ggcacttttt ggtagtgttt tgttttgatc atatgaacac tcaaatcctg aagagattca
      121 aatgaatgac cacagtacat acactttagc actttctggg catcttcttt cccttccatt
      181 tcaagcaagg aacgtttgcg aggtttggac catcttttgg ggttattgtt atctgtttcg
      241 tggttgtcat ctcgataatg tcccgtttca ttcatgtgca ctgttaattc cactaaagta
      301 tcgtaggcag cgctgcagtc cttacagcgg aatttactgg ctccagtgaa tatggagcca
      361 tagagcttac tgctctgtct gtacagctgg actgtgctaa aaaggcttgg ttctggcaga
      421 attctgctct gagaaacttg ctgcagtgtt ttggccatcg cagtctggtg ccagtcaaag
      481 ctgccacttc cacaactgct gctgctgctg ctgctactgc tgctgctacc gttgtttttt
      541 tctgaaattg gctggtgaag gttcagattg agattggacc agtaggaatt ggagaggaag
      601 ttattataca cggccttcat ttgttccaaa ctatcagaca ccgtggagtc ttccagtggt
      661 atggaaacct ccttgctctc ttcctcgttt ttaa
//
LOCUS       KCLJ01003870             541 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 431861cal ultra-conserved element locus
            uce-869, sequence.
ACCESSION   KCLJ01003870
VERSION     KCLJ01003870.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 541)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 541)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..541
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="431861cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>541
                     /note="ultra-conserved element locus uce-869"
BASE COUNT          164 a          122 c          112 g          143 t
ORIGIN      
        1 ggcttcagat cgcgtgcttg agaataattc gactccgagc cctggaagag ccccctcttt
       61 ttttaagtgt ttggacaggg acgtgtctca gctctgatcg tagcagaaga acttctcaaa
      121 agcctccctc tcttcggcaa atatggtata atttacagag caacttaata atccgagggc
      181 caccgcaaaa gccctttgcg ttgtaaaccg cttctaatta cctgccagag caattagctg
      241 actatcacga agaaattaga tcgctcaatg tagcataaat aatgcgaata attttgtaag
      301 gagaatggaa agcgagacct ggtgtttctt tataaggaaa taacacctcg tactgtacga
      361 accctacatg aacacatatt aatgtctagg catgcacgga aatgaatccg aacatgaacc
      421 ctctggctta gattcagcac tttcttcatt tacatatgcg gggtgaaagt cggcttccag
      481 gcgtttagat acagagctct tccagatcac agtaattaac acatagcgac ttcaatagga
      541 a
//
LOCUS       KCLJ01003871             298 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 431970cal ultra-conserved element locus
            uce-2839, sequence.
ACCESSION   KCLJ01003871
VERSION     KCLJ01003871.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 298)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 298)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..298
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="431970cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>298
                     /note="ultra-conserved element locus uce-2839"
BASE COUNT          109 a           51 c           53 g           85 t
ORIGIN      
        1 agagagaagg agagagagag atatgacttt ccttgaatga tctgtttaac ctaaagaagt
       61 cattaattac ttatgtgagc tattgcttct gaaagacaat aaacctgcct ggtcgccatg
      121 gatatgacat atttgctctg aaaacaacac aataattagc aaaggggaaa gatacaagga
      181 gaatatgcaa actcctgagt ttaaagccat agtgtttcct ttacttgtca gagtcaattc
      241 tgtttgcaat tcaaatcaaa caaataaaca gaatactttt ttaaatgatc tcccacac
//
LOCUS       KCLJ01003872             650 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 432070cal ultra-conserved element locus
            uce-1652, sequence.
ACCESSION   KCLJ01003872
VERSION     KCLJ01003872.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 650)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 650)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..650
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="432070cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>650
                     /note="ultra-conserved element locus uce-1652"
BASE COUNT          216 a          103 c          122 g          209 t
ORIGIN      
        1 aactgccgaa gaaattttat ttggggaaaa tatattaaaa tataaataat tgagttgaag
       61 ccctgctgta ttccaaatac gaacttgttg cttttggaaa aattagcacc attttgtagg
      121 acagtagagt taaatgaagg agggtgattc tttcatttct gctctataga atgatgtgcg
      181 ctaatcagca ggcaatgccc tgtcagtgag ctaattcaac tccctgctaa aagaagtgta
      241 gattaatgga taaaggaggt ctgtggtagg gtcacactga tatggattca acgtgtacag
      301 cagcttgtca gatgcctgct tggattaaat ctaacctttc ttgttgaagg ttgccattta
      361 ccctattctt tagtgcctca atttattttc ctcccagaat ttccacataa aaaaattatc
      421 atctatttgc ttttcagagc aaatttagag aaccaatttc attatctgta agaaacctgg
      481 aggcattaca tacagaaaaa catagggaat atttaaggga catcatacct gatttattct
      541 aattctcaat gagaaggaga gctaatttta caaagaaaag gccagaattg ttatgtaaaa
      601 ttatttcaat ttaaggaaac tttaggttct acttctttta agaaaaggca
//
LOCUS       KCLJ01003873             444 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 432183cal ultra-conserved element locus
            uce-5752, sequence.
ACCESSION   KCLJ01003873
VERSION     KCLJ01003873.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 444)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 444)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..444
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="432183cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>444
                     /note="ultra-conserved element locus uce-5752"
BASE COUNT          143 a           85 c           69 g          147 t
ORIGIN      
        1 ttccctgctt ttgttagcat gagtcaccac cttaacatta tctcagctgt agacttttat
       61 ctgtgaatat ctaagccctg tcttgtggaa aactaattac tgagccactg agaggcttca
      121 taatgtcctg catttaagtc ctgaacatca tacataatgc ataggaagca gtcgctgcac
      181 tctgattaca gaacactgtc attaagagag caaattaaag atgtgaataa ttcactggct
      241 gagcttattg tcagtgctgc attgtgaaat tagaatttct aataagtact gcaatttttt
      301 taacccaatt aacacagaga acatcttgag tctgattagt acaataaaaa ttattacctt
      361 attcttttgc ttcacaacag ccaaattaaa tactgtactt aattatgcag cattcatcgc
      421 ttctgtgcta gaaataataa taat
//
LOCUS       KCLJ01003874             530 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 432291cal ultra-conserved element locus
            uce-292, sequence.
ACCESSION   KCLJ01003874
VERSION     KCLJ01003874.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 530)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 530)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..530
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="432291cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>530
                     /note="ultra-conserved element locus uce-292"
BASE COUNT          189 a           73 c          124 g          144 t
ORIGIN      
        1 tcttgatagc accatttaca cattctttaa agtaaacaat atgcactttc ttagaaagcg
       61 atataaatat atatataaat acaggacttg ctaacctctg ttaaccatct gaatgtgatg
      121 gaataatcta tttctactgt gcaggtaggc ttgtgcatgg tggtgtggca atataatttt
      181 aaaagtttgt tacagatgtg atgggaagct ggaaggagtc gaataagcag aaaaaagagt
      241 ttagatctac tgtaagcaat gagtcggaat gagccgttaa aggttagaat ttatctttgt
      301 ttctgatcat tcaatgagaa aaatgacttc cacagaaata gataccttaa aaggggaaag
      361 ggtggcaagg gtgaaatagg attgaaagtc ctacaggtaa taggaataac tggaagtgca
      421 gacgaaattg ttcttcagac caatgaggaa cgcagccgtt taaaaagtct caatgctgtg
      481 gtgctgaaag aaaagctcct ggtgaaaaag aaaaaaaggg caatgcggct
//
LOCUS       KCLJ01003875             768 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 432400cal ultra-conserved element locus
            uce-2878, sequence.
ACCESSION   KCLJ01003875
VERSION     KCLJ01003875.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 768)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 768)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..768
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="432400cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>768
                     /note="ultra-conserved element locus uce-2878"
BASE COUNT          240 a          123 c          173 g          232 t
ORIGIN      
        1 tatgacaaat ctgaagcacc tgaagaatat gcctcagagt atgcagagga aggacattat
       61 gaaggcaatg atcctgagct gacagaagac caaatagaat atggggaaga gcctggagaa
      121 gaagatgaag tgctagacct tgaaatcaat gaacccctag atgaatttcc agtgagtttc
      181 ttctattgta tcttcaaaga taacattgct tcacgtgcat agggttttag actgatttaa
      241 aatctgttta cctccctagg gaggagggga aattagacct attatcactg tctgccagtt
      301 tctttatcta ggctgtgaca aagtttgtgt tgacagcttg tttggcggta ggtaatgctc
      361 ctttgtcatg ctggaaagca gttgagaatc atgaccttga gggttgtatc cttaaggaag
      421 aaaactgctt tgtgtggtgg agatacactg ccaattgtta gaagtactta atgcaaaagc
      481 ttttatccag gctttagaca agatctgata aagtccttcc aaggtgaaaa gattattgac
      541 ctgctaaaga catctttaag gtgctaatat cccaaagtga ttgatgtcct gcttgttcat
      601 cctttttgta actgagagct gtctaaacct gaataaagag attggaggtt agttcagaaa
      661 atgtcacctg cataattcaa tataatttaa gcagcatata gagaacatgc actgactttg
      721 ttaatgaaat gatttaatct taaaactgta tgtgatcagt gaggtgtt
//
LOCUS       KCLJ01003876             796 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 432620cal ultra-conserved element locus
            uce-2950, sequence.
ACCESSION   KCLJ01003876
VERSION     KCLJ01003876.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 796)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 796)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..796
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="432620cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>796
                     /note="ultra-conserved element locus uce-2950"
BASE COUNT          271 a          142 c          143 g          240 t
ORIGIN      
        1 attttcaagt agccaactac tcagctgcta aaatgtaagt cacatacaga atgtatgcat
       61 gcttgattct acactgtttt ttaaagggaa aatgctttat gtgtgtaaaa agagaaaagt
      121 gaaagaaaaa aatggataag catgtgaata attagatcag agatagatgc caccttttct
      181 cagtgttgaa actgtgagga gaaaaaaagt gctaccatat aattgacata attgatctat
      241 ttttttccct tttttgctgc agtaattttt tatgcatgcc attgttgctg ttattatcca
      301 agatgtgatc ttgtgtggtt gataatactg actagatatg aatactggta agtaccagcc
      361 aatcacaaat ctatagtgtc tatttctgca tcaccaggtg ctatctcatg ggaaatatcc
      421 tcttttttgg caggcacaca gcgctctgca ttatctgtca ttttcattag attcaagcta
      481 cagctgagcc aaaaagactt agttctagca tatgtgctca aaatggccaa gatgagattg
      541 tccaaaatca ccctttcagg attgtattag aaaacaactg gagctaaagc taaaaattag
      601 agctagcaaa gtatctgaat tacatttggg aaactgcaaa caccataagc tcaaaagatt
      661 tccagcttat cacagtcatc acctccaaaa gctccaagga gcctaagtca gcaatttcta
      721 tgtttttcaa cacttctttt gtacagacta aatgtgatga tgtcaacaaa gaagagcaag
      781 gacatcacaa gaagaa
//
LOCUS       KCLJ01003877             874 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 432732cal ultra-conserved element locus
            uce-464, sequence.
ACCESSION   KCLJ01003877
VERSION     KCLJ01003877.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 874)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 874)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..874
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="432732cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>874
                     /note="ultra-conserved element locus uce-464"
BASE COUNT          274 a          182 c          161 g          257 t
ORIGIN      
        1 agcaccacat taaatgaaga atgcttgata tctaacccct gatttggaga gctcacttac
       61 acggcagggc catgtaatta agctgacaac ccacaatttc acacagaaca gaagtccaag
      121 actgcaagaa catgaacact gaattacttt taaagaaaga aacaggaatg caatcttgaa
      181 cactgttatt aaaaaaatga gagcaacatt ttggagtaac gagcagagat tactcattcc
      241 cttgttttac acaagttgac ttttggcttt ctgcagaaca ccatttaaca gagcacatta
      301 ccaagctgct agccactttt cacagtgatg ctaaagcagg taagagacaa taagtggaac
      361 tgttgatggt ttatattact ctattatgtt aatgttcact aaagtatgcc ataagctctc
      421 tcattacatg tgtataaacc aattctctgt ggtgttattc ctgtgctaaa tgctataact
      481 acataaatct tgaattaatg gagactttat agttcctgaa aatgaagggt aattgctatc
      541 tgttaatgct gttgttgcta ttaaaggaag tatatatttt cagtaacaat gtttatggac
      601 cgtgagcttc acatctcagc tagtgcacag agaagagaca gtgcaataca agtatcagac
      661 tgactccctc tctctccctc ctccctctca gcatcatttc cacagctcca gcaagcaacg
      721 ctgcaatgct cctaatgtcc ttcactgagc acagagtaca ggaaacagga tttgcatttc
      781 catctcaggg aacgcatgat ttgctaagtt tctcgcttgg ttaaatggct ggacagctca
      841 ctttattagt ttgggtatct caaacagttc tgtg
//
LOCUS       KCLJ01003878             493 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 432841cal ultra-conserved element locus
            uce-7539, sequence.
ACCESSION   KCLJ01003878
VERSION     KCLJ01003878.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 493)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 493)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..493
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="432841cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>493
                     /note="ultra-conserved element locus uce-7539"
BASE COUNT          107 a          119 c          136 g          131 t
ORIGIN      
        1 agaaaacaag aaaggtggtg gcaaacgtgc tgccgggcat ggcacaaggc tggtaagggc
       61 accagaaccg tctgagctgc ttgtaccagt cagctgccat gcctggctac cacctggggg
      121 atggcagtgg atgggaatgg ggcatggatg gggatgggca gggatttctg ggtggcaccg
      181 gagctctcag ttcttctccc tgctgccaca tttctcctct gtgcgaagaa aatactcagt
      241 gacctgatgg ggctgccaag ggaaagttga aggtctccca ttaattccag actaaaaatg
      301 acaaattcat cttctacgac aattaaatga agtcagtaat tgatgctaat tgatcttcag
      361 ccgagagggc tcttactgct ttgctgtgct ctccctgatg ctctggcact ttcctcactt
      421 cctggggatg tccccagggc cccgctcctg cactttgcat cttttttggc tggtggagtt
      481 tgcatttatt ttc
//
LOCUS       KCLJ01003879             675 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 432952cal ultra-conserved element locus
            uce-904, sequence.
ACCESSION   KCLJ01003879
VERSION     KCLJ01003879.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 675)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 675)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..675
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="432952cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>675
                     /note="ultra-conserved element locus uce-904"
BASE COUNT          223 a          105 c          148 g          199 t
ORIGIN      
        1 aggagtaaaa cattcactct tccagcactt actgcactga cagcttgata aagtggttca
       61 aggcataatg ttcaaacaga gggaaaaaaa aattaaaaat gtaataataa agttaaatgt
      121 aactgtttta aagtataatt ctttggagag ctcagtttta tgttgggccg gcatttgaag
      181 ctgcactagt cattattaac gggaagcaca gatagaggag atttaaatca ctaaagtaat
      241 aaaatctgaa cgagggctag caccttgaaa ggctcttgga gagaagattg catacaaatg
      301 caattaaaac gatgcttata aaatactaag atgttaattg ggtttagtcc cagaagcccc
      361 agcagtacag tatgtcagaa gttagctggt ttgaagttta aaaagagtgg tttaatttgt
      421 acaccttgtc ctaattacga agctttctgc agcctgtgta tcggcatggt ttattgtagc
      481 ttagagcttt gtaaaacaaa cacacaccag ttaattgggt tattgcaatg gaaaattggg
      541 ctgcaggact gaaaccttcc ttgctagtgt ttttttacag cttgtaatga acgctccagc
      601 aatgtcagga tagactgatt tgtaaggtgt gcagtttaca acttggttat accgctggtc
      661 cgaaaaatag gtgat
//
LOCUS       KCLJ01003880             504 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 433065cal ultra-conserved element locus
            uce-7294, sequence.
ACCESSION   KCLJ01003880
VERSION     KCLJ01003880.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 504)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 504)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..504
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="433065cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>504
                     /note="ultra-conserved element locus uce-7294"
BASE COUNT          154 a           76 c          114 g          160 t
ORIGIN      
        1 attagttttc atagccactc caggtcttgg ggggaaaagc tgaaaagtac ttttgtttag
       61 aagtctgagt gatggtgggg gggaaacctt ttcttgaggt ttttgcatgc cagtgcacgg
      121 cctattgctg tgagagaaag ggtaaggctg cttgaggcaa tgcactggag gacaaagtgt
      181 tttctagcac tagaaaaaga aaatgcatgg caaagttttg tcttctagta gactatatag
      241 catgcagagt ttagtatgtg tcaaaacagt gtatgacatt gctgtatcaa agttgtaaaa
      301 ttaagcatta tttattgaaa actatgtatt ttttttgtaa aaacctgatc acctagagga
      361 ttaatatcag tgacttgtgc tagtgctaca aacttaacca gcttctttac tacagtactt
      421 gatatgcagt gttaatgctc agggttgaaa ccagtccact ccaatgtctt ttttgcaaga
      481 gtttttaaat aaaggaacaa caaa
//
LOCUS       KCLJ01003881             460 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 433176cal ultra-conserved element locus
            uce-2680, sequence.
ACCESSION   KCLJ01003881
VERSION     KCLJ01003881.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 460)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 460)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..460
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="433176cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>460
                     /note="ultra-conserved element locus uce-2680"
BASE COUNT          121 a           78 c          105 g          156 t
ORIGIN      
        1 ttttttcttt tcaaaagtta aggaccatac tcagaagtct gttcggtcag ctgatacatt
       61 gttcgaatgt atgtatgcat cttgcctgct ccctacttga atttgtttat tgggggaagg
      121 aggtggtgtt gattactttg gttttagggt ttcttttggt tctatttaac aatagcagtg
      181 aaagttttgg tgacagcgat tatgactact aaacaattca gtttattgga agacgaattc
      241 ttctggatca tatcggactt ttcctagtcc ctgagaccct aacttgtgag gttttttagc
      301 aacaatcaca agtcaggctc ttgggaccta ggcggagggg aaccagcagc tttggactgt
      361 gtttgtttct ctgcagaatt tagagaacca aaggagcttt ccttgcctgg aaggggaaaa
      421 tatacatatt ttaagcatca gaactgttcc taaaaaagaa
//
LOCUS       KCLJ01003882             882 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 433281cal ultra-conserved element locus
            uce-496, sequence.
ACCESSION   KCLJ01003882
VERSION     KCLJ01003882.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 882)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 882)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..882
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="433281cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>882
                     /note="ultra-conserved element locus uce-496"
BASE COUNT          265 a          176 c          168 g          273 t
ORIGIN      
        1 ccctgctaca tctgcaacac gtcgtttggt ttatattcaa atcagtgatt ggcacataaa
       61 gcttttatct cctacctcct ttgtaaataa cggcacggag aggccacggc tcgtgcacac
      121 acgcagcatt cacaccccat ttctccagca gtaaccaggg ctcaggtttt ccataaagcc
      181 gagtgttttt aaaaggaata tagctggatg ataaaagaac actaaagatt ttacttttaa
      241 taagaacagt gtgtccttaa aacggcatat ttagctagca gaatgttaac tgcaaggtaa
      301 gagtgttgtt ttataccctc agtaaccaga ccaattatct gcgaagtttt ttcatattta
      361 atgtatcccc agtctccttt caccatctgc ccttccccct ctaacattgt ggaattttta
      421 tgagatagga caaaaatggg catttccctt attaccatct cactgtggaa atcaaatatg
      481 caaggaaagt agtgtatata ctaattagtg ctgaattcat aattactgtg ctcattgatg
      541 gagatacatt tgaatacatt caactcctct gggagtggag caggctgtcc agaatagttt
      601 gaaaaaatgc cctcagcctc ttttcttctt gaaattaggg atctgtggca tacagtaatg
      661 ttataagaag aagatccaaa gtgcccgcaa tttctttaaa tataattaat caagtgaagc
      721 atgtaaccta atgaatgtat ttgatataag ctactgttca aatatgggct ttatctctgt
      781 ctgtgttgga attactaaaa ggagaggaca gaggatcagg cattcctgtt taaaatgtta
      841 ctcagtggtt ctcgctgcat gtcaacagta cgcgagcttg tc
//
LOCUS       KCLJ01003883             664 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 433392cal ultra-conserved element locus
            uce-4067, sequence.
ACCESSION   KCLJ01003883
VERSION     KCLJ01003883.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 664)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 664)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..664
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="433392cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>664
                     /note="ultra-conserved element locus uce-4067"
BASE COUNT          235 a          119 c          117 g          193 t
ORIGIN      
        1 agttcataca ggaatccaat tagcatatca ttgtgactga ttaaatatgc ctcatgtaaa
       61 tttacatgtc aaaatacata ctgtacttaa acaaacagac aaggatgcca gtcttctgta
      121 aacagctttg cattcataag ctaaacacaa aagcttatat ttaaattctc aatgactacc
      181 tgaatagagt gaaaggaaga tagaaaggta atgttactca tgcatgaagt gagagaatga
      241 atatagacat ttgtttctct ttgtctctga agaaaactat tgacaagaga ctccccatct
      301 gcatatgagg ctgtcacgtc agattagctc atcaggtaat ggaaatttgg cctctgatcc
      361 aaaaaaggtc cctatgcact aagaatcaag actgtttcaa agagattgta ttatcttaga
      421 cagcaggatt aaattaatat gggaatgact tctactggag gaaatttttt gttaaacatg
      481 tgctaatgtt tattatgcag agcatccact tctcataagt gaactttctt gacatttatt
      541 cattacttgt tgaccttcct tgcaactgaa aaacaaacaa gtaagtggac cccctctgaa
      601 gcatggagcc aagacctcca aagatgcatt catgctagca cagattatga aacagtagaa
      661 gaaa
//
LOCUS       KCLJ01003884             726 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 433503cal ultra-conserved element locus
            uce-5005, sequence.
ACCESSION   KCLJ01003884
VERSION     KCLJ01003884.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 726)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 726)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..726
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="433503cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>726
                     /note="ultra-conserved element locus uce-5005"
BASE COUNT          245 a          127 c          132 g          222 t
ORIGIN      
        1 aatcctcagt gataattaat ataaattcat tcaaagatgt tagtggtctc taaaaattcc
       61 tgctgtcttg aaaaaccctt ttgtttgcca attgtctgat ctgcataaag aggaataaag
      121 tgtacgttat agcccaagac atgtcttcac tctgttggtt ttgtaaataa agctgatgat
      181 tgctattcca tggcaaccat agaaaggaaa acaggaaata taatgcagaa agcctgcttc
      241 agtgaaaaat actgtaaatt gagtttgaca gcatttgatg gcatttgatt attctagtca
      301 cagccaaaca atgatataaa gagtaatatg aaacagaatg tgttactgcc tagcagactc
      361 aaaagcaata aaccttcctc caatgtgaca caatcacttc acaatcataa ttgtagcctg
      421 tttgatacct ctgagtacag cagaagggca ctgactgaca tagatacatt ttgtttttta
      481 tttaaagtga aatgaaaatg gcgcactggg gctccagata caatcggtat attcacctac
      541 ataggcatga atcacttggc agttatttca gctgaagttt aaatgtgctt agacaacaac
      601 aatatcaaat ctttctcaga tagctgcaaa aaaatcagaa atgggatgta agcacatagt
      661 tctttttcat tttgtagcca cacatggcct tacattgtta tagctgcagt atttctatgg
      721 gaggtt
//
LOCUS       KCLJ01003885             582 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 433615cal ultra-conserved element locus
            uce-3167, sequence.
ACCESSION   KCLJ01003885
VERSION     KCLJ01003885.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 582)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 582)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..582
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="433615cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>582
                     /note="ultra-conserved element locus uce-3167"
BASE COUNT          164 a          133 c          117 g          168 t
ORIGIN      
        1 agatctatga caacatccaa tgcattttgt gagaccagat gtcaacagcc tgtctaggcg
       61 atgtgtaact ttttgtactg cagaacagga aaacaaaggc tcatacattc agctctgaat
      121 tgaaattcca catggagctg atcttttgag cattatttgc ttttattaac aaaatgtgtc
      181 ttaaacactc ctttgaattc aacaaaagac agctctctct ccctcgctcc ttttgttggt
      241 aatcttactg caaaaatgtc tgtgttgctt tttctccccc gccccattcc ctgcctgtaa
      301 aatcgaagtt ggacaaacac tgcacggctg aagtgacata tttgaatgga attcagacca
      361 accagttcct gtttatgttt ctgatttgag aatgtagcct tctcattcac tatacattag
      421 aaacacacca aggccataaa tggtgtcagg ttgcaggcag gcagggccaa gcagcattaa
      481 tcattacttt aaggcaactg gcaaaagcag cagctgaggg aacactacac ccttcagctc
      541 cgcataaatg gacattccag ggtttggcgt gtgtgggttg gc
//
LOCUS       KCLJ01003886             607 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 433726cal ultra-conserved element locus
            uce-4559, sequence.
ACCESSION   KCLJ01003886
VERSION     KCLJ01003886.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 607)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 607)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..607
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="433726cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>607
                     /note="ultra-conserved element locus uce-4559"
BASE COUNT          170 a          140 c          113 g          184 t
ORIGIN      
        1 tcttaatttt ctaattcata ttcatcaatt aaaaataaac catccctttt gatgagtaaa
       61 tttacataaa ccagttgcta aagcatccta acactgtagg agttcagcct ggaagatttg
      121 catgcagcat cctcagatga aggcaggcgc tttcgatttc catcgagagc cttgctgcgc
      181 tggaactcta atgggcttag aacagtaaat tttgaagaaa ctgattgctg cccccgtagc
      241 tagtaaatgc ctgcctggac ccagtggcat ttgaaaaaag tgttttatca taaaattatc
      301 ccagcagagt ccattctgca agataacatc atcatcatca tcatcatcag tactccatgc
      361 aggacccaac agctctggca caatattgcc agtcatttat ctgttgtcag cacaggttac
      421 acactgtaat ccttgactgc ctcggaatta gaatgtcttt gatgtcccca caagagtttt
      481 ttgcccgaag gctttaccaa tgctcggcgg ctcagtgttt attcctcgta atctccctct
      541 catctccagg ctagcagtga cagatggtta tgggcacaca atagtattaa gagtttgata
      601 ttttttt
//
LOCUS       KCLJ01003887             506 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 433837cal ultra-conserved element locus
            uce-4537, sequence.
ACCESSION   KCLJ01003887
VERSION     KCLJ01003887.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 506)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 506)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..506
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="433837cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>506
                     /note="ultra-conserved element locus uce-4537"
BASE COUNT          146 a          105 c           94 g          161 t
ORIGIN      
        1 agacacattt cctggaggga aatggacacc tacctacaca caaagctatc cagctaattt
       61 ataccttgtt gaatttataa tcttgtctat gcttctatgg acactttgta tgggctgcag
      121 ctcaaatcct aaaatagtca agaatttttt cctttcccat atagtattct atttactttg
      181 actttgaaaa caaaagcgta taaatgcaat aatgcaggta gactagaaat actagattga
      241 aaatttaaag tagtttagct tgtcccattg tgactgacag tgttgtacga cacccaacgc
      301 tgtaccctga cattttccag gctttctccg tagctgaatc tagtattagc tttggaaacc
      361 cattgtgtga gtggtgggtg gatgggtcgg aatcgtgtgc tctctacaca ctgtatgtta
      421 ctcacatcac aagctgtatg gccactccat atgctgtgaa actgtaaatg attcccaaat
      481 acacctgtaa ctcttaccag gattgt
//
LOCUS       KCLJ01003888             610 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 433946cal ultra-conserved element locus
            uce-3441, sequence.
ACCESSION   KCLJ01003888
VERSION     KCLJ01003888.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 610)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 610)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..610
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="433946cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>610
                     /note="ultra-conserved element locus uce-3441"
BASE COUNT          183 a          142 c          125 g          160 t
ORIGIN      
        1 tctatccacc tccattgttt agagctcaag tggagagtaa cctgtgtaat gcccttgtga
       61 actgcagcct ctctaaaact tgttaaaaac tgtgaacttt tccccctcct gaaatacccc
      121 aatcagtact tttggtacac atacctcgaa gaattctctc ctcatggcaa cgtagaaagt
      181 cccagattct aacagtgccg tcgtcagagc atgtagcaaa tttattatcc gtgggtgaga
      241 aactgttaca tgaagacaca cagcagggga aagaagtcag catttaacag attatctatg
      301 cttctcagac agggcaaaat tatactgtaa tgtgttatac actgaaggag gcatttgaac
      361 ataggcactt ctaagtgaat acagtgcctg ccaaagaaga catgaattca gcataggatt
      421 actgcagtgc cctgtcagca ccctcctatc tgtgactgca cacagtagtg ccttctctgc
      481 aggatgagaa gcaacaccaa tatggtttgg tagtcagcct agatcatgtt tggtaatacc
      541 acaataaagt gacactgcac agaagcacag gagaacagtt cttaggctcc tcttcagcca
      601 caggtgcttt
//
LOCUS       KCLJ01003889             617 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 434052cal ultra-conserved element locus
            uce-3905, sequence.
ACCESSION   KCLJ01003889
VERSION     KCLJ01003889.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 617)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 617)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..617
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="434052cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>617
                     /note="ultra-conserved element locus uce-3905"
BASE COUNT          202 a          102 c          117 g          196 t
ORIGIN      
        1 ttaggaacaa tttagtatca tttcatttaa aatatgcaag ctttatatcg agaataaatg
       61 tgtagccaca aggtaaaatt aatattagtc tcatcattaa aagcctttaa agtttccatt
      121 atccattatg tcaggtagca aatatcttct caatgtaact ctagacatta aatctgtcaa
      181 gaggcatgca gtaaaataaa tgtctgggat accttcataa acaaaaatct tatttccata
      241 attcatacag ctggctggca tttattggca cgtcaggtgc aatggggaca tttcaggaac
      301 attaacatgt acagcatcat ttgtcaacaa agcaacaatg taagcaaatc gttcagaact
      361 catacagatt tacagctttc tctgccagct gctaattacg gtgtgctctg cctatttggt
      421 atggtctttt ttattggaaa atgacaaagg ggttatggta tcccagtttg gaatatagat
      481 gcgcttttag taataatatg agtggtaata tgactgcaca gcttggagtt ttgatctagt
      541 tgcactagtc tgataattga ccggttctaa ttgatgaagg acaaagagaa attcgcaggg
      601 atagaagtaa cctctgc
//
LOCUS       KCLJ01003890             720 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 434164cal ultra-conserved element locus
            uce-4355, sequence.
ACCESSION   KCLJ01003890
VERSION     KCLJ01003890.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 720)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 720)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..720
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="434164cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>720
                     /note="ultra-conserved element locus uce-4355"
BASE COUNT          210 a          113 c          137 g          260 t
ORIGIN      
        1 tcagagtact aatattttga tgcatgtgtt tcaccttatt ttgattaaat cttttccagt
       61 tttgcaaaca ctattccgca acatgaaaaa taagatttta tctgtaaaca caaagccctt
      121 catctaatat ttgttgctgt tgccaatttt tcaatgaaat gacctaagac ccataacata
      181 tacagtagtt gcattatggg gaggggggtg ctatctgttc ttgctttata atgggggtag
      241 ctttagaagt gggttggtgc tctaaggagc acaagtttgg gatattttta aatgaactga
      301 agagaaatta ttagctaata gactggcagc acgctgtaaa attattactg tattgtgtac
      361 tggctataag atgtagaatc tttcagtaag ccaatcatct gtaatcatcc tagcagtgta
      421 atattaggtt gttaaggctg ctgtgtttta aagggcattt ttatttggtt tttggtgaaa
      481 tactttaatt tgttgattat attcatatgg aaacagcatt cattgataat agctctaatt
      541 acatatgtat gaaaacaaca aacactggat gatctagttg attatttaag cataaaataa
      601 attgtgttaa aactcttgga taacgtgtat ttggcagtgt tcttgtaccc cacagatgtg
      661 aggttacctg cccctggctt tcagctgctt ttgtctaatc cacctcttca tcttcccagt
//
LOCUS       KCLJ01003891             438 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 434275cal ultra-conserved element locus
            uce-2392, sequence.
ACCESSION   KCLJ01003891
VERSION     KCLJ01003891.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 438)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 438)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..438
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="434275cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>438
                     /note="ultra-conserved element locus uce-2392"
BASE COUNT          138 a           72 c           88 g          140 t
ORIGIN      
        1 aggagaggaa atgatcattt ttcctcctcg tgcattctta ctattgacca aggttattct
       61 ctttatcatg tgcagatttt attgagtgat gccaagagag atgaatagaa gcaaataatg
      121 acagtgctgc ggtgatgaaa tgagagacag aggtcgtcta ggttttatac tgaacaaatt
      181 gagtcacatc cacttctcat ccattattta ggggtgattg ggcaggcttg gcttctatag
      241 atttgataat cattcagatg tccatattaa atatgtaaca taaatttctc atttggctgt
      301 cgatggcttg tcaccacaaa acaacaatgc ataaaaaggg ctttaatgta tggattctca
      361 gaaatatttg acataaataa atatgtaaaa ggcagataat aaaatctgtt tctgtctgcc
      421 tgccagctag ccttcatg
//
LOCUS       KCLJ01003892             568 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 434383cal ultra-conserved element locus
            uce-7884, sequence.
ACCESSION   KCLJ01003892
VERSION     KCLJ01003892.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 568)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 568)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..568
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="434383cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>568
                     /note="ultra-conserved element locus uce-7884"
BASE COUNT          185 a           83 c          118 g          182 t
ORIGIN      
        1 gggggcttta tgctgtagaa agggttaact gggattctct gtaatttgtt cccatttcct
       61 ttgcctccct tcagctcctt cacaaaatgt taatctaatt gtgatagtat cactttgatg
      121 acaatatgac aagacagaca aatttgattt tattctccac agagcaaagc atatgctgct
      181 tgggagactt tgacagagag aaggacataa aacaaatgga gttcatgaat atacaatttt
      241 tattgtacac agtagtgaca tccaaacttc agagaatagg tgggtgagac ttatgcttta
      301 ctattgagat taatgggtac gtaaaaaagt gccaacagag agtactacag tttatgttaa
      361 aaatgtcgac gtggataaga ataattttct tctcaagatg aatgatgcat ttaatggctg
      421 tgagacattc atggccagta gcagttcctc aaaagtaatt ttttgttgtt attgtaaatt
      481 acataatctt aactgcaatt atagccctgt ttaggtaaag gtcaagttag tacagtggat
      541 ggttataaac taagagggaa attggtaa
//
LOCUS       KCLJ01003893             458 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 434492cal ultra-conserved element locus
            uce-4967, sequence.
ACCESSION   KCLJ01003893
VERSION     KCLJ01003893.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 458)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 458)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..458
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="434492cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>458
                     /note="ultra-conserved element locus uce-4967"
BASE COUNT          140 a          109 c           94 g          115 t
ORIGIN      
        1 tctactactg ctattgtagc tgaacatgta tatgggctaa tagtaacagt acagacattt
       61 caggggcaaa aagattttat gcttggattg cagggtggaa aacattctgt aaatcacatg
      121 catttcactg ttacacattt gaagcagcca taccttcctc ctactgcgtc gtcttgtggc
      181 tgggccccgg cagtgttcct ctgtgaacgt cgcagtgacc cccctggatt gttactaggc
      241 cggttggaca ttggcacctc tctcctgaag ggacataccc tttctagaca ctatcattca
      301 ctgaaagaca agagagaaaa gatacacggc atgaagactc actgccacac ccaaatgtac
      361 aagcaaaaac tgaaggcaga actttcaaac aaacaagaca catgaacaag gttcttctca
      421 agacatttag aaccttaata cagagcaacc aggttttg
//
LOCUS       KCLJ01003894             484 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 434593cal ultra-conserved element locus
            uce-5910, sequence.
ACCESSION   KCLJ01003894
VERSION     KCLJ01003894.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 484)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 484)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..484
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="434593cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>484
                     /note="ultra-conserved element locus uce-5910"
BASE COUNT          157 a           92 c           73 g          162 t
ORIGIN      
        1 attatagcat aaatcatctg ttatattctt gcataaagca aaactaggtt tgtaagccct
       61 tgcccttaat ctttctttca attttcttcc atttaaaaaa catctttccc caatactcta
      121 attaatgcaa atgatattca tgattagtta gtattatgct aatctgagcc ccaaatttcc
      181 ctaaatctac atggtgttgt ctgagtacca gattgctctg ggttcctaag taaaattaca
      241 ttagcctgcc agctgtacaa aacaccatga tagagtagaa atccaagcaa atcatcaaga
      301 ttacattagt tttgtttctt aatgaacaac tgtttgcatt agggattaca gacaaattat
      361 gattttcctc tctgtaccca ggcagccagg catctgttga gaagtttcac taaatagatt
      421 gaggagagct aagacagaga gacgagtcta atatttcacg taattgaatt ttttccatta
      481 caaa
//
LOCUS       KCLJ01003895             610 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 434701cal ultra-conserved element locus
            uce-5882, sequence.
ACCESSION   KCLJ01003895
VERSION     KCLJ01003895.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 610)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 610)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..610
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="434701cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>610
                     /note="ultra-conserved element locus uce-5882"
BASE COUNT          155 a          127 c          146 g          182 t
ORIGIN      
        1 gggccagcac cctgtgggca cgggatcttc ccgcaggagc agctgggagg aggacacagg
       61 ggcgcccttg ccctgtgccc cccttgcctc tgccaggtca gccctgcacc ttgctggcaa
      121 tattgcagtg ctggcgagga cgctgctgca cagttcaggc actgcaggtt tctaatctgc
      181 ttatttataa ttcaaaagct tgcccatata ttaatgaacc cttaatgagc tgttgaaaat
      241 gcctgaatta cagtcagatt attaaactcc aacagcccct gtaatcatac catttgagtg
      301 ggctttaggt acttttcata tctgcagctt tgtgttgtga aggagatggg tttattcgaa
      361 gaaagctttg taataatttt gacctgcaat ttatttattg gcctctgaat gcagtagtct
      421 atgcagatgc tctcgtctat tatgtgtggg ggcaggtgca cagcatgttg aaagacagct
      481 aattatgatt tgctgaaaga tatgctaaaa ctgtggtctt agaacaaagc caagttcatt
      541 gttaaacaat gttttagtgt ctgtttatgt ggtttgtcta aatcacaaag atactgaaat
      601 gcacagtgca
//
LOCUS       KCLJ01003896             664 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 434781cal ultra-conserved element locus
            uce-4828, sequence.
ACCESSION   KCLJ01003896
VERSION     KCLJ01003896.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 664)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 664)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..664
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="434781cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>664
                     /note="ultra-conserved element locus uce-4828"
BASE COUNT          222 a          169 c          113 g          160 t
ORIGIN      
        1 aaacacctgt attcttgttc taattcactg caacaaactc tctcagcaga ccagttttgc
       61 tcaaggaggt ttggacaact caaatatttt gtgcaaaaat ggaacagaaa gtatcttatt
      121 ctaccgaaac ttacccatca atgaggaagc ttagagctgt acagtaattc ccaaccaact
      181 gcagaaagtt gagagtttga aaacactaaa gcacttttga ctatcaagcc tttctgtgct
      241 tcaacactgg ctgcagtgta aggaaggact gaaggtatgt ggtctaaaca caacaaaagc
      301 cactgcctta ctctagatta aatatgcagg aagaggcccc tttgcataaa cacaaacact
      361 cagcaaatga gtaactggct caaatcagac gcctgctgtg cattctacct gtcctgatct
      421 ctgacaagct acacaaaggg gataggagct gcaaaatcaa atcaaatcat agctacacgc
      481 cttgctcctc tgatagtaaa taacaacagc accaacaact cctcgccaaa tgctcactcc
      541 taatctaagc attgctctgg cacagagctg aatcctgtgc tgtgcccact ttggctcagc
      601 cacccatctc gccacagtag aaaaaacaca accaaacacc acctgtaaaa ttaattttca
      661 ctaa
//
LOCUS       KCLJ01003897             631 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 434889cal ultra-conserved element locus
            uce-4676, sequence.
ACCESSION   KCLJ01003897
VERSION     KCLJ01003897.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 631)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 631)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..631
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="434889cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>631
                     /note="ultra-conserved element locus uce-4676"
BASE COUNT          164 a          130 c          125 g          212 t
ORIGIN      
        1 aaaaggcttt tccaccgtaa cacaaggtct tttcttctat tgtctgtcac aagtgtaatg
       61 acttgtgatt ttctgttcct tttgcttcca gaatgagctc tgatggagct ccttaatgat
      121 aacaaaccat cactgcagta atattgatac ctgttgtaat cactggcatt ctggcttttc
      181 aattttcact atttgccttg gatcaagtag ctctgtgcta atgcaacaga aggtcaccag
      241 atgaaggggc tgataacaga gagggactgt tctacttaac atgcatggag gattatgctt
      301 ttcagtcgtc cccgagctaa tctttcaagt tgtccttttt tgactttctc agtttaatca
      361 gtttaatctc atcttccttc ttttctgatt acaaggattt tctgtagaaa ccttgcctcc
      421 acaataagga ccacgtggca atttattctt atattgattt caacatttct tttccactac
      481 cagggctctg ggtgaagggt gaaagctaga tgggaagcag atgcgcctcc tgcctggtaa
      541 atccccacat gttgttatct gggggtctga ataatacact taagtcagaa atggcagcag
      601 attggaaata ctcagctgtg attaaaagtt a
//
LOCUS       KCLJ01003898             686 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 434996cal ultra-conserved element locus
            uce-7309, sequence.
ACCESSION   KCLJ01003898
VERSION     KCLJ01003898.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 686)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 686)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..686
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="434996cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>686
                     /note="ultra-conserved element locus uce-7309"
BASE COUNT          222 a          137 c          125 g          202 t
ORIGIN      
        1 gcgaaagtag aagagaatca ctaataacta tattctttat tcaacaaaac cttgcttcgc
       61 tgtatgttcc agtgtattac aggcaaacat tatccagccc ctttctgaga gttggcagga
      121 gagtttgctt tcctaactct gtgaaattct aaaatataat gaaaatgcag ctaccgtact
      181 ttctaagctc ttggtagata ttttcactta ctttgtcatt ttcaaggggg gaaacaatgg
      241 tggcatctgt gccctggtgc taagtgctca tttgcatgca gaggcagaga gatatccgtt
      301 tattatcaat tttatgcatt acttcatttc atggtgttaa aacaattaca ttcaaagagt
      361 tcagcagtcc acagccaagc tattcagggc tccagcagca tcatataata acgttattca
      421 gggagagaca catacatcat agtttactga cttagaagta aaaaggagaa gcaactccta
      481 tagagctggt tacagaattt gtaaaacatc agagatacaa caataagcga gaaactcagg
      541 gcagatggac gtgaaatttg ttaacttctg aattactttc caagaaggtt gagaaaattt
      601 tttagacgca acagttctac caaattctct gccacattct caatattttc tacaacacca
      661 tccacactgc aaagctccac ttgagc
//
LOCUS       KCLJ01003899             517 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 435106cal ultra-conserved element locus
            uce-3443, sequence.
ACCESSION   KCLJ01003899
VERSION     KCLJ01003899.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 517)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 517)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..517
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="435106cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>517
                     /note="ultra-conserved element locus uce-3443"
BASE COUNT          172 a           91 c           80 g          174 t
ORIGIN      
        1 ttaccatttt catatctagg acactaaaat gagaggtctc aagtataaaa taaaactact
       61 tttagaaatt agtaaaggta tagactcaac taggagctcc gtttgttttt cttttacact
      121 ggttaaaaaa aaaaagaagg tctgtttcaa atcctatttg tcccttatct ctgtttgttc
      181 agttgttttt aatatcacgt actgaaagaa tttcaatagc tgtttcacca tgaagtcatt
      241 tgttatcctt cagcaggcct ttgcctgctg aattgtaaag cagcctcgac tatttgcatc
      301 ctccagatgg agcagcatat aaacactccc agatatttct ggtaagtatg aaaaaatatc
      361 ttatttgtcc tttctgtgaa taaataagag aatgtcaaat tttatagact aataaatttg
      421 tatgttggca ctgacattga atctctcatg gcctgcaatg tcacagaccc tgagaaacac
      481 aatttcaaat atatactaag tcaaatagaa gctaaat
//
LOCUS       KCLJ01003900             561 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 435214cal ultra-conserved element locus
            uce-3906, sequence.
ACCESSION   KCLJ01003900
VERSION     KCLJ01003900.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 561)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 561)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..561
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="435214cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>561
                     /note="ultra-conserved element locus uce-3906"
BASE COUNT          187 a          114 c          100 g          160 t
ORIGIN      
        1 aataacctaa gttcaagcaa tgaaaactaa acactgcaag aaagacatgt acagctcctg
       61 aagacaaaat gtagggtttg cataagttgc taactaaaat cccctattca gtcagcaatg
      121 ccagtgtctt cgtgtttcta ctgtttgaca caatgatgga ttatttattt actgaacagc
      181 actggtggcc agaaaatctg attttcatgc atgaaatcca tgaaacccca gccactgaac
      241 agcttctttt acacatggca aaggtcacct atcaagggat tttctcacgt tttgtgtgat
      301 tggtcatgcc tcatttcctt caagaaaata tgatttccct aaagtgtgtg cattttaaga
      361 gattctcaaa gactgagaaa gttatttcct ctttgtttgt gataagcaca aaatatagag
      421 actaacctac agggaacgac aagcaactgt ttgtagctgg aaaccacatt taatcctatc
      481 attaaggaaa accttggagc atactaggaa caaagagtgc aaaactagac acttaacctt
      541 gtcacgtaac cttgcagact t
//
LOCUS       KCLJ01003901             839 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 435315cal ultra-conserved element locus
            uce-2004, sequence.
ACCESSION   KCLJ01003901
VERSION     KCLJ01003901.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 839)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 839)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..839
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="435315cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>839
                     /note="ultra-conserved element locus uce-2004"
BASE COUNT          203 a          195 c          152 g          289 t
ORIGIN      
        1 agagctcact tttcacacct attccatgtc aacacctgtt taggtgcagg tttttgaaaa
       61 agcaatgact taccctaaca cgtagaagca ctttatttct acatacatga tttattttaa
      121 ttttatttca tggtattcag tgcaagctat atatctataa tgcattgtgg gcaaagagac
      181 tctctgatgc acagttctag ggaggcagat catttccttc acttaataat agttttcttt
      241 cctcttggct gcagactttc ataactagca ccatgccaaa cattcgaagg ctggattatg
      301 gcctgtcgta cttgattatt tttgtcagca ggctgaccca gcctgccctt ttcttgtgtt
      361 gttccttctg tttccatttt tcatgtcatc cagcttttca tcttgtcaat cagcttttga
      421 cttcctgatt aaagtgtctg tcacacgagc agcctggtct ccagtcagtt gtttaatttg
      481 ttcctcatgg catccaattg agttattcat ctggcccagc tgttcccaag tgcttccagc
      541 atcactttct cgtgtgtttg ggtttaacct ctagatctat gtacaacagt gtgaattgtt
      601 ccattcattc tgttgactgt gggttgcttt gcctctgtct gatgccttga cattgctagg
      661 aaggctgcta ctgtattctg tggcttaacc aaaagcacta tttcaccctg ctgttatggt
      721 aacaagtaca accaaacaca ccccagcatt ctagcaggcc cagtctttaa caattaggaa
      781 cacgtaatgg aaaactctgc tctcagggat ctgaatccac ccaaaaaata atgttgatg
//
LOCUS       KCLJ01003902             467 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 435426cal ultra-conserved element locus
            uce-1035, sequence.
ACCESSION   KCLJ01003902
VERSION     KCLJ01003902.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 467)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 467)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..467
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="435426cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>467
                     /note="ultra-conserved element locus uce-1035"
BASE COUNT          146 a           89 c           97 g          135 t
ORIGIN      
        1 atatgtatgg tagcctgagg ctgccagaaa ctttgcctgc tgaatgaatt atagaacagg
       61 aagcagatgg gctgtgtata tgaaacaacc actatctggc atgatatgct gcgcaatttg
      121 gctgcaaaga ttaaattgag ctattgaatg tttaatacac tatgcataac aaatacagcc
      181 agagccacaa aacagcataa attacagaat tggtattcac gctgcctttc ccaggaatca
      241 atacactgcc acagctcata agagtctgtt gtttaataca cataaagaag agaagaattc
      301 ttctattaaa atgagttatc tgggctattt accaaaggca gtgatttaac agtggtaaag
      361 tctatgtagt gctgttgaat gcagatgata atacttcttg tccttgtcgg cctatttcat
      421 agctcctatc agttgctgct gctgcaaggt cccctgggta cattagc
//
LOCUS       KCLJ01003903             668 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 435528cal ultra-conserved element locus
            uce-1752, sequence.
ACCESSION   KCLJ01003903
VERSION     KCLJ01003903.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 668)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 668)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..668
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="435528cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>668
                     /note="ultra-conserved element locus uce-1752"
BASE COUNT          214 a          122 c          130 g          202 t
ORIGIN      
        1 ggggagaatc agcattgctg ttcttgagat gaacctatcg gcatcggttg gccaaacaaa
       61 actgtaatgc aagaaccaaa taaaattatg cactgtgatg tggcaccaat tagaaagatt
      121 ttttcacgta gagtgaaaat gagaacatac tatggcttga agttgcaaaa ctcctgacta
      181 ccattttgac tgatcaagag actaatagat taaaacctca gcaggccttg ttcacgttat
      241 gcagaaaaaa aaaagtgctg cagtttagat acctctggaa cttttccaca gtgtcacagg
      301 tttgtaatac ttgaagccct acatttctaa gaatatattt cttgctcagt tgtttcaggc
      361 aagcccaaga ctttgtaact tttaaggggc ccaagatttt ttttcaataa cagaccagct
      421 tcttattcct gcagttacag atgtaatttc ctttgtcaaa cataaggtac caaatataat
      481 gcaataaaac gttttgaaaa acaactgtgt gaatattcaa accaatctat gttgtacttt
      541 gacagtgaat tggagtgcag ctcattactg tgctgtccag tcatgctaac aatgtcactg
      601 ctgtgggtgg tcattgagta taaagtgcaa atgcattcta tgtaaatact gaatgtctgg
      661 gaagtcct
//
LOCUS       KCLJ01003904             777 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 435636cal ultra-conserved element locus
            uce-2755, sequence.
ACCESSION   KCLJ01003904
VERSION     KCLJ01003904.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 777)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 777)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..777
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="435636cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>777
                     /note="ultra-conserved element locus uce-2755"
BASE COUNT          261 a          158 c          135 g          223 t
ORIGIN      
        1 gacatttata tggcgataaa tactaccttc aaaaatgcta aaaatgttgg ctaggtttag
       61 tctgagctac taaaaaatta ttataaattg tagcatcaga cacaagacag acatgaatta
      121 ttggctggca cagactagaa gcaacattta tctttcactt cagtctaaat cacactagcc
      181 gcaacacctt ccatttcact cacacaaata atacattatt caaaataaaa tggagcattc
      241 ttgggtaaaa aactacttca tttcaaaggg ggaaaatgaa caatacacag aaacaaagaa
      301 cgacagaaac caaagttaag taggaaagtg gtctattatt ctgtgttact gcacaaacag
      361 tgcttgctta attgtgccta gttagaaggg ttggtgcaaa ctgcacacat ggaagatggc
      421 aataaagacc tcagtcagct ttgtggaatg aagtaactag gtaactgttt tgacatatga
      481 tggtctcagc tccacctcat ctgttaacag agtgcaaaga tcccaatgtg agccctgatg
      541 tcatcttgtc ctcttactcc tactaaaaat cagcaaattc ttttgcacat ttttctgtta
      601 gagaagcacg aatatcttct tcttcatagt catcaaagtt gctggtatct ccaggacctc
      661 tgcactttgg tatgaatgga gcttctacct gtaggcaaac gaaatgttac tggccaaata
      721 gatttaacat tgtgcacagc aatactccca ttacttctca catcctgcca agatatt
//
LOCUS       KCLJ01003905             646 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 435748cal ultra-conserved element locus
            uce-5450, sequence.
ACCESSION   KCLJ01003905
VERSION     KCLJ01003905.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 646)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 646)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..646
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="435748cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>646
                     /note="ultra-conserved element locus uce-5450"
BASE COUNT          217 a          112 c          135 g          182 t
ORIGIN      
        1 ttgtaaatac attagagcag ggttacccgt gtttctgtgc gtgcgctttg tatctggtta
       61 tccaagctga tgatatgggc atccccgtac agttgcatat attaaggctt ttaagaaata
      121 tagtaaaaca aaaaatatga cctttaaaag catggttgag ttgcattcat tttataacca
      181 tcaaagcaac tctttactgt tgtaaggtag aaaaatcaat gatgcaatct ttttcctttt
      241 gcctcgtgca atccgtaatt gaaatggaaa atcaaatgaa cggctaacag ataattgttt
      301 tatcaatatt ccctgcctgc cctacaaggg tcagcctaga atgatcatga gccacggata
      361 tgatgaggac aaaatgtgaa attgaacagc aaggaggcaa taaatcaacc ttgacaagaa
      421 agagtgacca gcatgtagct cttgtaggca gcttttggga cactttttgt ctcaggtgtc
      481 tgcactgatt taaaaatgtg agaatataat atttgaagct ctaccagtgg gtaaacaact
      541 ttctaggtta aggcatcatc aaagcaaaca cgctgcaaaa aatgagtata ttggggcata
      601 gtaggaaaaa tcccacagta aaacaacagg ggaaatattc tggggc
//
LOCUS       KCLJ01003906             529 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 435856cal ultra-conserved element locus
            uce-5995, sequence.
ACCESSION   KCLJ01003906
VERSION     KCLJ01003906.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 529)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 529)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..529
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="435856cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>529
                     /note="ultra-conserved element locus uce-5995"
BASE COUNT          136 a          146 c          147 g          100 t
ORIGIN      
        1 ccgaggccca gttcctcaag cgcaacgggc gctacgaaga cgagcaccct tcctaccagg
       61 aagtgaaagc ccagactggg agcttcccag ttaaaaacct cacgcaaagg aggcccctgt
      121 cggcacgaag ctacagcaca gagagctacg gcacggccca aacgcggccg gtctcagcga
      181 ggcccaccat ggcagctctg ctggaaaaga ttccgtcaga ctataacttg ggtaactatg
      241 gcgacaagcc ttccgatagc agtgatataa agccgaggcc tccccctggg aagggaaatg
      301 agagctgtgc taaaatgccc gctgactgga gacaacagct acttagacat atagaagcta
      361 gaaggttaga cagggtatgt ttggcatttc tctgcaatta atgcctttag ttgtgtgttt
      421 cggtgaccac cagaattccc agggattcct gctgtgtcag agggacctga gggaccccaa
      481 aatccagagg ctcctcactg atgatgcccc gttgccgggg cggtggctc
//
LOCUS       KCLJ01003907             557 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 435966cal ultra-conserved element locus
            uce-2345, sequence.
ACCESSION   KCLJ01003907
VERSION     KCLJ01003907.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 557)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 557)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..557
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="435966cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>557
                     /note="ultra-conserved element locus uce-2345"
BASE COUNT          172 a          121 c          120 g          144 t
ORIGIN      
        1 tttgaaagaa aataagcctg aagtttttaa cttgccttaa tttcagaata aaaagaccac
       61 aaccaaaata atgcccgggg cacacggtga tgcctatgac tggattttaa ttgacttgaa
      121 gactgtcaca gtcctattat cataaaacct gtaatgcact tccagcatgg aggacccatc
      181 tgtgcccacc atccatctgt ttagtcatga ttggcaaagt ggtagggaac tcgcagtggt
      241 tgccgctgcc tgaaaggaat aaaccacagg atcttccagt gagtgccaaa aacttctgag
      301 aaggtctgct gccatggctt ctggggcctc gatctacagc attattagtg gaagacagca
      361 tgcccacagt gcacttcagt acaacaatgt aggttggctg ggaatccaat actggactct
      421 gatgaattgt gtccaagcat cacttttatt tcattacgac gtgcagctga gacttaactt
      481 tggagaacag aaattcatca atcaaacaaa ggcacctttt gaagcacagg agaaaacact
      541 gcagaaagta tcttttg
//
LOCUS       KCLJ01003908             408 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 436075cal ultra-conserved element locus
            uce-3294, sequence.
ACCESSION   KCLJ01003908
VERSION     KCLJ01003908.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 408)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 408)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..408
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="436075cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>408
                     /note="ultra-conserved element locus uce-3294"
BASE COUNT          115 a           71 c           71 g          151 t
ORIGIN      
        1 ctgcctggaa tattttgcag attggcgttt ctgtttgttg attccatatt aaacagaata
       61 accaagcatg ctgaaggtaa agccctggtt taattaaccc tcttggtgta gtaccatgtg
      121 attaaatgtg actgagctgc tccttggggc ttctgctact gaaaatacta acaataatca
      181 tttgttttct ttttatattt aaacacatta ttgcatagct tggtgcagag ataattacca
      241 attttatctc ctgtgttttt ctaatgttca ttaataacaa taaagggttg taggttaaaa
      301 actcatttaa ttgcctttat gttaatgaca ttatgaatag ccttagctac aagattttaa
      361 ttctgtccag tatcctgttt ctcagtaaag cccctggaga gctgctca
//
LOCUS       KCLJ01003909             449 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 436180cal ultra-conserved element locus
            uce-850, sequence.
ACCESSION   KCLJ01003909
VERSION     KCLJ01003909.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 449)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 449)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..449
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="436180cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>449
                     /note="ultra-conserved element locus uce-850"
BASE COUNT          144 a           70 c           97 g          138 t
ORIGIN      
        1 agcttgaaca gtatgcattt gaatggatgc aaaatgtctg tctttcaaaa gcgaggctgc
       61 aattctaagg atgccatgga aagaaaaaaa aattactagc tctagtaaca gatgtgaaat
      121 tacattagat aaatataatc attagtttca gtctcaccct ggttaatttg tttgtggaaa
      181 tgtgcaaccc attattcatt aggtaatttt tcacacattg attagaaagc catgtcgaat
      241 tgtgaccccg cacattgggg tttgcctatc ttgcagtgaa ctatatcgct tacaatagtg
      301 gaaatggggg acaaaatgtt tatctcaggc tgattttgtg ccaataagta aagtaaatca
      361 atagccagtg aagtgtgaac gacatttctc tgctgtataa tatggttttg ggggcaattt
      421 gacatgctac aaggggaaac aagggtctt
//
LOCUS       KCLJ01003910             608 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 436283cal ultra-conserved element locus
            uce-2209, sequence.
ACCESSION   KCLJ01003910
VERSION     KCLJ01003910.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 608)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 608)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..608
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="436283cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>608
                     /note="ultra-conserved element locus uce-2209"
BASE COUNT          203 a           99 c          110 g          196 t
ORIGIN      
        1 tcctgggctt tgcagggcca tttctttatt aatttaatac ctctgcgctc agctgtggtg
       61 cggaattcag gattgattcc tacactgatt tccacaatat gatttacata ggagctgagt
      121 gtaaatttaa aataatttgg actgaatgat ccttactaga atggatggcc tgaagaaaag
      181 gatggaaaat aaaagcagct ttagtcagaa tctaagcaat ttgctgccaa atacaagcag
      241 catttcccca gattataatt tacactgtat taactgtcaa gagtactttt gagaaatata
      301 gataacaatt cagatgcaat cgatagggag tgacagttga ttttaaagct taatgcaaga
      361 caagaaagaa atgactgggg tatcagctct ggaagaataa atttgttttg tatttgattt
      421 ttgtgttaaa tttattactg ccaagaacag ctctctttca ataatattaa gaacaagatt
      481 gtgaaattgc aacatgtttg tctcccacag ttttcacagc atatccaata taaaatgatg
      541 ccccttctaa atagatcaaa ttaaactgct atatatattc cttttgctcc actggttaag
      601 taaagtgc
//
LOCUS       KCLJ01003911             802 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 436394cal ultra-conserved element locus
            uce-1290, sequence.
ACCESSION   KCLJ01003911
VERSION     KCLJ01003911.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 802)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 802)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..802
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="436394cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>802
                     /note="ultra-conserved element locus uce-1290"
BASE COUNT          240 a          172 c          148 g          242 t
ORIGIN      
        1 ttaaaacaag aattctctta tcaaaggtat caggattgcc taagtgtgaa atgtttccaa
       61 ttaaaatttc attcatgttt agccaatttt tcaattgaat taaaaaagca taaaatacat
      121 ataatctaat gtatcctctc tgaagagtga agtctttatt ctgctgaatt cagaagagcc
      181 tcctccaata taatcactgc attcattcca attataagag caaagttgtg cagacttctt
      241 atatgttatg caatgtcaag aagcacagtg cacagcacta attcctcaag tgaaagaggc
      301 agcgatttcc cacagcagct ccttgattta aattacagag cacatttatt atgcttctgt
      361 tcctctgact gtgaaatacc atagtacagt agctttgttc tgacctcttc tccaaagccc
      421 tgcctcaaag tgtgactaat ctagtgccgg atgacagcta acttcaacat cagacaacac
      481 gaaaattgaa gacacttttt atcctcttgc caatctgcga gtgtctgaat aagcctcgtc
      541 aacttcatta caaactcatc atctcttgtg tagataatga tggcctaggc tggtggagaa
      601 ctcagcttct tgttgttttt actgactctc tctgcctcca ggccaagcat ctgtggggat
      661 aatgaatgga gcaattcttt tggcacaaaa caaaaggctc ttggggtggg gaaaggcccg
      721 tggcgtcagt cgaggcccag ctctcacaag cgaaatttct ttgttatgaa tcggttctca
      781 gaaaatagct ctgtagtaac ca
//
LOCUS       KCLJ01003912             507 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 436505cal ultra-conserved element locus
            uce-3801, sequence.
ACCESSION   KCLJ01003912
VERSION     KCLJ01003912.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 507)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 507)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..507
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="436505cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>507
                     /note="ultra-conserved element locus uce-3801"
BASE COUNT          159 a           77 c           80 g          191 t
ORIGIN      
        1 aaatttcatg acctttaaat gcagtttatg agtactatct caaaaattta aatgtatgct
       61 ttattttaag attaatcttc ttcaattttg ccaatttgag caggggagtt tactggaaaa
      121 tgttttcatc caattttatt tcatttggct ataaatgagt tatacccctg cattctcata
      181 aatgttttct ttttctattt cagtgatcgc tgtggagaag acccaaacca gaaagtaatc
      241 catggggtta ttaactcctt tgttcatgtt gaacagtata agaaaaaatt ccccctaaag
      301 gacacatttc tgattatata tttttaattt aaaatgtcaa tctagtatat acatgatttg
      361 tccttttctc tcttgtagtt ttatcaggaa atttttgagt gtccttttct gaatgaaaca
      421 ggggagtatt ataaacaaga agcttcgaac ttattgcaag agtctaattg ctcacagtac
      481 atggagaagg taagagattc ttcaata
//
LOCUS       KCLJ01003913             552 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 436611cal ultra-conserved element locus
            uce-2001, sequence.
ACCESSION   KCLJ01003913
VERSION     KCLJ01003913.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 552)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 552)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..552
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="436611cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>552
                     /note="ultra-conserved element locus uce-2001"
BASE COUNT          164 a          132 c          103 g          153 t
ORIGIN      
        1 ttctatctct cccccagggc ctcacaggtc accatgtata tcttagtggg actgttcagc
       61 accgtgtcca ttccatctac ctccaactcc acctgaaggg caaaatcctt aagatcttga
      121 cacaatactg ataaatacat ggaattatta aagttgccat ctcagcagaa taggattgct
      181 gccgcctttg ttctcagggg aatacatatt tcacccagta gcaagacacc caactgctgc
      241 aacaatcaaa actctctgaa atgcctttaa gctaatcatc tttgaacata agcctttgtt
      301 gttaaatcag ggaccttcta gatgcaaggc agagaaacct tttttctcca ccttgcacaa
      361 aacagcttta agcctgtcac cgctgacagt aaggttcagt gatctgtcaa cattcacccc
      421 tgataaagac agtgagagaa atccgtggct ctggagagtt cagtagagac caaacagtat
      481 gtttgcaaaa gagcattttt atatgttttc ttgtgacagc actagtttaa cagaaaatag
      541 ttggagtgtg cc
//
LOCUS       KCLJ01003914             672 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 436720cal ultra-conserved element locus
            uce-3932, sequence.
ACCESSION   KCLJ01003914
VERSION     KCLJ01003914.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 672)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 672)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..672
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="436720cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>672
                     /note="ultra-conserved element locus uce-3932"
BASE COUNT          215 a          125 c          132 g          200 t
ORIGIN      
        1 cttgactgca aagtttgggg aataggaaga ctgttcgctc tgctggattt taatacatgt
       61 ttacatcctt ctttgcagaa cagcaccacc tctcaattaa tgttactctt agccttaaaa
      121 aagcaattgg taataaataa atgtttttac aaaggctgct aagcaatttt agattctaat
      181 attttaaagc tttttcattg atctcctgtt aaatgagaag caagaattaa cctcaatgac
      241 agtgctagta gctctgcagt ctattttggc ctgttcttta agtaaaaaga gcaacctaga
      301 tgagaatttt gtgcttcact ggatattgaa agatgaggca ataaactgct aaacttgagt
      361 aatcacacac tcccagagga atgcctcaaa tggggttggt caaaaacctt gaaattctag
      421 ccttctgcac actgcctggg ctttaacatt tgatgagagt cattatagtg ggggactgaa
      481 tacaagtgtc ttctgattac agaccttcca ttaaaagttc ccaccagtgt gcctttccat
      541 agagaagcgt caatgggatt aaaatctcaa ttcaccccag tcaattctcc agtaacacga
      601 tttcattaga ggcaggcagg gaggaaaatg gactagaaag cagtgaaaca gctggtgtat
      661 aaattataaa gt
//
LOCUS       KCLJ01003915             331 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 436831cal ultra-conserved element locus
            uce-2917, sequence.
ACCESSION   KCLJ01003915
VERSION     KCLJ01003915.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 331)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 331)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..331
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="436831cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>331
                     /note="ultra-conserved element locus uce-2917"
BASE COUNT           89 a           58 c           67 g          117 t
ORIGIN      
        1 tgaataagcc tacagtaaat aaaaaaagga aagtgtgtaa gggtgtttga ctaacatatt
       61 tggctgttat ctctattttt gttatagaca gctgtatgaa aactataggt gttcatgatc
      121 gtgttttcga tgttaacgac aaagtagaaa attcattaga accagcaggt tagtatgctt
      181 agagaatctc ttttaacaaa tgcgtgtatc cctctggtgc ttcctcttct ctctgcatgc
      241 tttgcatggt gcaactatcc cgcttttgca catttctagc agtgctaata cggcttgtgg
      301 tatacttcct gtatccttgt ttaattcagg g
//
LOCUS       KCLJ01003916             407 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 436935cal ultra-conserved element locus
            uce-1943, sequence.
ACCESSION   KCLJ01003916
VERSION     KCLJ01003916.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 407)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 407)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..407
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="436935cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>407
                     /note="ultra-conserved element locus uce-1943"
BASE COUNT          170 a           71 c           50 g          116 t
ORIGIN      
        1 aagtgaggga gagaaacagc atgttaaatg aagtatactc tctaaaaatc accgatgagt
       61 gcaaagaatc cacttagaac atataaccaa atgttattta atatcttaaa aagtaacaca
      121 atccaaaatg gatatttcac acaacactac ataaacaaca tgaacacaat attaccatat
      181 ggagggactt tcaaatatag acttacaaaa atccctgtcc ttttttttcc tttaaattat
      241 tatactaagc atgacaagta atcatcattt acaatatggt acactgacac aataaaaacc
      301 atgttacaaa tgtgctgtta taaatcagta acgttaggga agacatttca tgaactgcaa
      361 ttatttcata tgaaatacta tacaatataa acagaacatc catcttg
//
LOCUS       KCLJ01003917             722 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 437039cal ultra-conserved element locus
            uce-1037, sequence.
ACCESSION   KCLJ01003917
VERSION     KCLJ01003917.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 722)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 722)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..722
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="437039cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>722
                     /note="ultra-conserved element locus uce-1037"
BASE COUNT          233 a          139 c          105 g          245 t
ORIGIN      
        1 aagcaacaag gcagctgttg aacaagtact atcaacaaag caatcttcta gccctttgat
       61 ttaggctatt catatcttct gccctgaaat aaaatgactt tcacaattaa aacaccgaaa
      121 tcaatgctgt atctattgtc atgtctgcag gagaaaagct ttaattacaa ctctagttag
      181 ataacacaat cattacacct ccttaatctc aaatataaaa ccagtaccct ttcagtgcta
      241 tgccaccctt tctttgaatg tgaatggctt tttatctgag cactttaatt tgcatgcctt
      301 tgctgcgagg cagctccccg tgatatgtta attgcagagt gctttaagta ctaaaagatt
      361 aacataaaac cctttgcaaa caagctaata gtttatgata atttttgcat ggcctttgtc
      421 tgtctatcac tggattgcct ctagctgtaa ttttataaag aagctgtaaa atatcattta
      481 aacaagttca tttacacata attattacca gaatcacatt attcaattta gatactccag
      541 cctattaaca atccatgaac taaaatgtaa ttaaactatt ttccttttat gaacctattc
      601 attacaatgt gtgggagatg gatctctcag tttcactgaa aatttttgtt gttggaattg
      661 acaagtctgg cacccattct gtgcttttaa ttacattaaa agtatttcaa ggcaggtaag
      721 at
//
LOCUS       KCLJ01003918             599 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 437149cal ultra-conserved element locus
            uce-3904, sequence.
ACCESSION   KCLJ01003918
VERSION     KCLJ01003918.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 599)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 599)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..599
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="437149cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>599
                     /note="ultra-conserved element locus uce-3904"
BASE COUNT          160 a          100 c          125 g          214 t
ORIGIN      
        1 tgtgtgtgca ctaacattcc ctgggttttg tgtgatcatt ccaagtattg ctgcgagatt
       61 actgtggatg tgatctttta gcatgtgctt ttatataaaa gaaagtggta gctccaaaca
      121 atatagcaat ctaccttata tagagccttc agatactgtg agtggggatt ttgcctgaga
      181 gagggtgagt gaagtgtgct tgtgaccctg tgtgtttgag aacctatata ccagcatgta
      241 ctgagaacgt atgtgtgtag taataattat gctgcaatgt ataatcttgt gtgttattta
      301 aacagtacta gtactgtaca ctggttcctt cccttgtgtt tgcagttgca cactgaatgc
      361 aatgggtgca gcaattacag acatttagta ttttgtcccc aaagtacttc aggtgtaaag
      421 acctttctac tactattatg cttccccttc agtgtgtacc actaaagaat gcattgattc
      481 ttcatacaga gtaaccttgg gggaaatggc tgatttacaa gttattttat cagtttagag
      541 tcacagtatc catttagcaa tattaaattg ctgaaattct gttttccttt taaattttt
//
LOCUS       KCLJ01003919             441 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 437255cal ultra-conserved element locus
            uce-1903, sequence.
ACCESSION   KCLJ01003919
VERSION     KCLJ01003919.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 441)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 441)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..441
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="437255cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>441
                     /note="ultra-conserved element locus uce-1903"
BASE COUNT          141 a           76 c           75 g          149 t
ORIGIN      
        1 ctgtttatgt gcagaaaaat agaacctaaa ggccacagaa tgaaatataa tttgttaaaa
       61 acagggaata gcattgatta aaatgccagc actttactgt ggagaagtat gtccccaggt
      121 tccttgcact tgccctgtga ttatacaata gattttaagt ctgtgatatc tacaaatcta
      181 catcaaaata tattctatag ctgtaggaaa cagctctgaa ttgttaacct tctctccagg
      241 tactggaggt aacacactgt gagattagat gtatattttc ctcaagatat accacccatc
      301 gaggagtcca tatttacatc ttttgttgat atttttatag attaaaagag tctcttttct
      361 ggtgataatt ctgctaagta ctgtaatttg ctgccactaa tatttgtctg agtcctagtt
      421 tgcaaaatat atttgaaacc a
//
LOCUS       KCLJ01003920             653 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 437356cal ultra-conserved element locus
            uce-6273, sequence.
ACCESSION   KCLJ01003920
VERSION     KCLJ01003920.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 653)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 653)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..653
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="437356cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>653
                     /note="ultra-conserved element locus uce-6273"
BASE COUNT          186 a          129 c          119 g          219 t
ORIGIN      
        1 tttattaatg ctttcttaaa aacttcacca cccatcagcc actcgttttg attgaataat
       61 gtctcccaat ttttagtctt tcatttatta aagaaaaggt cttacctggc ctgttttgta
      121 ttgttctctc tgctctcttt ttttttaatc taaagtaatt tcaaagagtg agcgtcagat
      181 atcaaaccca atatcctttt tctcattagc acttttcccg tgcagacctt caaatgtggt
      241 aataattaat gagtctgtgt cagaaaatga ataaaagatg gctcagatgc ttcactgttc
      301 agggctgacc tttagctgag tctactgtat taatatattc ttgtgttgtc agactcaaag
      361 agctaactgc cttatgaatt atttatcaac acaaaaagtc ttaaccagaa acagtgttaa
      421 cattaatttc taaccctctg tgtcacagca aagcctgcct gcactgcata attgaatttt
      481 agttttagac aagcaatcaa agcacaagtc actgttgttg taagtgtggc tgcctatgat
      541 agcaagagga acggctgctc tttttgcaca tctggtgcat tacaggcagc tcaggtttct
      601 gtgagcaata agcctgactg cagacaaacg tggaatgggt ttgcagggat gag
//
LOCUS       KCLJ01003921             744 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 437469cal ultra-conserved element locus
            uce-4678, sequence.
ACCESSION   KCLJ01003921
VERSION     KCLJ01003921.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 744)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 744)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..744
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="437469cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>744
                     /note="ultra-conserved element locus uce-4678"
BASE COUNT          220 a          140 c          165 g          219 t
ORIGIN      
        1 tgcatcagga aacttgtagc taaataagac aatcctctaa ttctgatgtg tgcgcatttg
       61 gtgaaacact tcttaaattc agttcactga tgaaaaattt aagatcatct ttcacatctt
      121 ttggagagca gagtcttatc tgtcgagttt catatagtag ctgactgctt tactgtgcct
      181 taccgagctt tgattgcaat atgctgtcaa gagccaacag tccgtgctac ttatttggct
      241 ttatgccaag tctggcttct tgattcctca agaagttgct atcagcccag agggggcaaa
      301 accaatgagc catagggcat gctttttatt aaaggggagt caaagagcga aaagaaacca
      361 catcagctgc tgtcaatact aagcgagtgc cagaaacccg aaggctacca ctgctgcaga
      421 acaactgcca agcactataa atctgagatt tgctgtgacg caaagtttcc ttaagagctt
      481 aatttctgaa gctactgtat tacttttctc aaagtggtgt atttttaggt aaaatccact
      541 tgagggagtg agggttaaga tataagtgta attttgatga atgaaagagc tacgctgtgt
      601 gtgggttctt ggcaagtagc catgtctttt gggatcacag aaattattga tgacacagaa
      661 cactcgtatg cccttagact ctacagctga ttcaacacag aaggaaatgc tgtctagaga
      721 ggaaaagttt tctagtggag atct
//
LOCUS       KCLJ01003922             672 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 437583cal ultra-conserved element locus
            uce-4343, sequence.
ACCESSION   KCLJ01003922
VERSION     KCLJ01003922.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 672)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 672)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..672
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="437583cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>672
                     /note="ultra-conserved element locus uce-4343"
BASE COUNT          221 a          115 c          110 g          226 t
ORIGIN      
        1 gcaattgcaa acactaacat ggacattttt tagcatcaga aaattctgga ggtttccaaa
       61 taaactcata attcagaagc atttgagatt cagcagtgta tcaataatag atttttagta
      121 ggttatatcc ttgaaagaag gtagatggta aaaataaagt tgttggtggc ctaatacatt
      181 gcaagcggtt tgtcacctac aagactgcat tctttaacga tatctaacac acaatctcaa
      241 gtgaatttat tgaccaaaac cagttccaca gaaccaatta gtatcttaca caggctgccc
      301 tgcaaggctt atgaggccat ccatcacttg tccatttaac tatttagcat ttgttccagc
      361 aatttgtcac actgtcagaa cggtagcatt tcagaatagg agttttggtt gaaagaaatc
      421 taactcagat agtgcagata tttcttttct aataagactt acacaagatt tatgtttcta
      481 ttatttttaa ccttaagcat cttgtctgga aggtgaggtt aattctttaa agtttccaca
      541 tttaaataaa ttgtgttaga tgagaattta aaaatattat gcaaaatgga attacttcaa
      601 acttcatcaa caattcacag ttctggagtg cattatctta cagctgcagt gcttacattt
      661 ttatcacttt tg
//
LOCUS       KCLJ01003923             599 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 437684cal ultra-conserved element locus
            uce-4285, sequence.
ACCESSION   KCLJ01003923
VERSION     KCLJ01003923.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 599)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 599)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..599
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="437684cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>599
                     /note="ultra-conserved element locus uce-4285"
BASE COUNT          196 a           85 c          115 g          203 t
ORIGIN      
        1 ggagtgctgg gtgtcaatta caccaaatat ctaaaagtta attaatgctc tgcagtaacg
       61 ctgatggttt tatttgtatt gcaagtagtt ctttgtgtac tttataatta acagatatta
      121 gtaaataatt tctcttggct gaactcatga attgtgagtt cacaagggac tttcaaaact
      181 ctaggcagac aggattttta gattgcagtt ttaaaaactg aagacaagat cagaaggtaa
      241 atctatacag ttcttattag gttatgttta cagaggaaga tgtgaaattc tacctcgcag
      301 aactggccct tgctttggat caccttcaca gcttgggaat tgtgtacagg gacctgaagc
      361 cagaaaagta aagtaaaatg tattttacca ctattatgtg tattttgctt gttgctttgc
      421 cttttccaat gagactttgt aaacaaatac ggcttaaatg aaataatatt agttaaaaaa
      481 ataacagaaa atattaaatg taaacactga tctttatgtg ttttggtgaa tgtgaatttt
      541 aattttcagc attttgcttg atgaagcagg acatatcaag ttaacaggta ggcaccact
//
LOCUS       KCLJ01003924             697 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 437792cal ultra-conserved element locus
            uce-7229, sequence.
ACCESSION   KCLJ01003924
VERSION     KCLJ01003924.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 697)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 697)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..697
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="437792cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>697
                     /note="ultra-conserved element locus uce-7229"
BASE COUNT          216 a          133 c          119 g          229 t
ORIGIN      
        1 aaagcactat agcttttgtg cataacttaa ttcattcttc aagacaagta caaaatttgt
       61 cactgacatt tagcgccagc cgtaggcaat ggataaaatg aactagttag caatttaacc
      121 tgtaaaaaaa cagagtggga tgaacaattt tctgccatca aagcaaatgg ctaacattta
      181 gcaagatttt atttttattt ttcagcccat cccatcctca aagaagtcag gctaacattt
      241 tttctgggtc ctaaatcttc ctctcagcct atttctttaa tggtttaaag taaatgacta
      301 tccagaggat aattaggcac tgtgctgtcg catcgtgtca ggtcacagct ggatttagtc
      361 agcattaacc tttggggaga attggaatat cagtatcatt taaaattaaa gacgtgtaag
      421 caggcatttc tggagatgtt agaaaagtaa ttgtctgtaa attgtttgac cttgagattt
      481 aattgcatgc acaacacaca ttctagcaag aaccctggac tgtgttcatt ctctttcacc
      541 tccgtacctc tcactttgca gaacccatta agctacctgt ggatttttct gtaaaatatt
      601 aaagattgtt ttataccaag aacaaaagct tttaaccagg agctcttatt gttaaacagc
      661 tgtagtatag acctccccta tatgaatttg tcttttt
//
LOCUS       KCLJ01003925             419 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 437902cal ultra-conserved element locus
            uce-5832, sequence.
ACCESSION   KCLJ01003925
VERSION     KCLJ01003925.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 419)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 419)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..419
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="437902cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>419
                     /note="ultra-conserved element locus uce-5832"
BASE COUNT          137 a           83 c           61 g          138 t
ORIGIN      
        1 attaggaaaa gtcactttaa taaaaaggaa attgcacata atgtaacaaa acaattgcta
       61 tttggaagcc cctgaagaaa tggaacaatg taatatgata tttcttaact tcatttccca
      121 tccattgcag aaagcataac aataaagttt tctacataag caacttcatg agctgaaaga
      181 agagaatgta taattccttt ccttggacta agccaaaaga aatgaagttg attcttctct
      241 gttagcctcc tgtgtaaaat ttttctcctt atcatctcat ctagtcatat ctttctgcag
      301 tttgaattac cctcttttcc tcaatctggt aaggcagtga aaggatgttt gttctgctaa
      361 ttaactttat taccctgata actccctgca gcctttgacg aaaacaatta ccgttcctc
//
LOCUS       KCLJ01003926             566 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 438009cal ultra-conserved element locus
            uce-3912, sequence.
ACCESSION   KCLJ01003926
VERSION     KCLJ01003926.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 566)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 566)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..566
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="438009cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>566
                     /note="ultra-conserved element locus uce-3912"
BASE COUNT          180 a           66 c          110 g          210 t
ORIGIN      
        1 gagagagtgt caaatattct gacttttgtt gctttgagtc gtgatttacc gttgctaagt
       61 ttttggcctg tgaataataa tttttatgtt gtgatggtat agttagaaga atcagagcat
      121 attcaaccat cctttttact tacttttaat caacttgttc ttccaaacaa ggtatggaat
      181 tgatagctgt tattgattgc ttgtagcatt acctaatctt cactaaatgt aggaagcttt
      241 tcagatttag aaaggtggca gaaaatgtct agtaatgatg ctgctgggaa ttgaagctca
      301 ataccgtggt cagtataaaa gtgatatagc tgtaagaggt attttattat aggcttttta
      361 ttaaatgctc aagctggtgt aatttacaga tattttgaag ttgcttatgt ttatttcatt
      421 tatttgaatt tagaccaagt tttattgata ataatgtgct gaaactagag aatgtaagga
      481 atacagtact gtgataatgg atgtcattta tcctttcaat acaaaaggga aatataagaa
      541 atcattacta aaacaggtat aaatgt
//
LOCUS       KCLJ01003927             771 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 438118cal ultra-conserved element locus
            uce-445, sequence.
ACCESSION   KCLJ01003927
VERSION     KCLJ01003927.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 771)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 771)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..771
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="438118cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>771
                     /note="ultra-conserved element locus uce-445"
BASE COUNT          251 a          143 c          122 g          255 t
ORIGIN      
        1 ctcacacctc aggattaaag tgccaactaa ctcatcatta ttttggttac taacctttta
       61 actgttgccc taactacatg ttcaccagca tcattctcat aaaatttctg taagaatcac
      121 agaaatgctg aaaaaattat ttttacagcg cagtggaact gctaagcttg tgcctcgttt
      181 ttgattaatt tcatgcctga ctcagtcaga gattaggccc tgacacaggt tataattaaa
      241 tattgaaatc atgaagtgca agaatgttta atttttaaaa tatgagtttt aatttacctc
      301 atacagagaa tagctctggt cacctgcaga gatgcattac acactacatt gcctaatgta
      361 ggatgcctga ataaggctga gcatacagtt aaagtaaact aatgcaattt actgaacagc
      421 agtcaaatat ttatccagtt gatgaagcag actttatgtg aaactcagac aataattaaa
      481 gagaagcctt gcttaaaaca tgcttattcc agtttccaca aatatgttat accaaagcag
      541 catcttcctt ttctcaaata ttgatgttct cctaacacat tatacagtga gcttgtcctt
      601 ggcattctct tgactattta atgaatacat ttcctggcat ttgccttatc tttgttatgt
      661 tgttctttgg agagctaaaa ttattagtta gcccttgaca gaaaaacatc agagcaagct
      721 agtaaaaggt cttatggtat caaagttatt aacatggtat ttgattaaac c
//
LOCUS       KCLJ01003928             402 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 438228cal ultra-conserved element locus
            uce-1122, sequence.
ACCESSION   KCLJ01003928
VERSION     KCLJ01003928.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 402)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 402)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..402
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="438228cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>402
                     /note="ultra-conserved element locus uce-1122"
BASE COUNT          135 a           69 c           55 g          143 t
ORIGIN      
        1 tgtgggcttt acctgcttta ttgtcagaag gaagagtaag aagtctccaa tgtatagtgt
       61 catcagcatt gtgatctgag aaacaacacc tacagaatct attattcatt aagtgtaacc
      121 aatatataat ttaaaacagt gggttttgtc aaataatgtt aggtcagcat aattttctgc
      181 ctattactaa tatctataac atctttgcct tagtcagctc tatttaaata tgcaatcatt
      241 tacagctttt gactatatgt gtgcgcactc ccaatttcca atattcaact actacaaatt
      301 ttatgctgac atcaatagca aactattaaa gacagtattt cattattggt ttttcatccc
      361 aaaagttatt tacaattata tactaagcac taatattaaa gg
//
LOCUS       KCLJ01003929             518 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 438329cal ultra-conserved element locus
            uce-3279, sequence.
ACCESSION   KCLJ01003929
VERSION     KCLJ01003929.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 518)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 518)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..518
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="438329cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>518
                     /note="ultra-conserved element locus uce-3279"
BASE COUNT          116 a          165 c          132 g          105 t
ORIGIN      
        1 ttagaacagt gggctccaaa acctatttag gaaaggaggc ggcctgaaga ggagagggat
       61 gaagagacaa ttaattggtg aatcctttcc aaatatgtta tcccgagtgg gtttggtgcc
      121 ccctgccaga gccccaggat ggcacgtggg gccaggatgc cacccatgca gagcccagag
      181 tagctgaccg gtggctcttt gctccatcag cgtctctgcc ctttattcat ggataactct
      241 ctccctgttt ctaggagaaa aaaaaagtgc gttcgctaca tacaaggtga aggcagctgc
      301 gtcagcccac cctcttcaga tggaagctta ctagactctc ctccgtcctc ccccgccatg
      361 ctcgcctccc cctccagaga ctcgaaacca cagactgaac aaacgcaacc cctctcgctg
      421 tcattgaagc ccgacccgct ggcgcacctg gtgatgatgc cgccgccatc ctcgctcgtg
      481 ctcgctgaga gcgccgcgag caagcccggc gccctgcc
//
LOCUS       KCLJ01003930             630 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 438441cal ultra-conserved element locus
            uce-7353, sequence.
ACCESSION   KCLJ01003930
VERSION     KCLJ01003930.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 630)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 630)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..630
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="438441cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>630
                     /note="ultra-conserved element locus uce-7353"
BASE COUNT          224 a          112 c          108 g          186 t
ORIGIN      
        1 ggcaaatttg ctgtgtttaa tgtattggac accatctgta ttttattcaa atagggttat
       61 atattttgtg aaaataaaaa ccagcctcat gagtcagtgt gtgcaaggca gtcacttgaa
      121 tatacataat gggaaacatg ttttaggctg gaagttgcaa agggaaatca aatgtttgaa
      181 gtgtcaaagt tggaaaaata taaaatacgc ctgacaccgt agctattgaa gccaaaatga
      241 ataaatcatc atctcaggaa agaaaacccc accaagttct tggctataac cttcattttc
      301 ctacactcaa ataaaattac atacaacctg ataatttaac cagacttgtc aataagaact
      361 gatggcttca gcagacacta tcacttcatg cttcagtgta gacttcagaa gcatccagta
      421 atttatccaa gaaataaatt taatgtcaaa cttgtctctt caagttgata gatgcagtag
      481 agctgatgtg aaatatacca tattgcagaa cactagagta aaattaaatt aatgccagct
      541 cagtagttta ttccccacgt acagcttttc ctatataaga agcattttag tatctttctc
      601 agtagtgcaa gcatgacttc caagaaggaa
//
LOCUS       KCLJ01003931             741 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 438547cal ultra-conserved element locus
            uce-239, sequence.
ACCESSION   KCLJ01003931
VERSION     KCLJ01003931.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 741)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 741)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..741
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="438547cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>741
                     /note="ultra-conserved element locus uce-239"
BASE COUNT          218 a          155 c          133 g          235 t
ORIGIN      
        1 agatagcaag tggttgagat ttgctatctt tcaatatacc tcttaagtgg taataggata
       61 accccttaac atgttggtag cctatcaagc tgcccctcag acttgaccct ggggtgaaac
      121 gggaaagtca gctctgttca cagcaattca acttctgtgc tagccaataa tgaagtgacc
      181 tgaaataata taaaaccctt tcaggctgtt tgatgatttt tgtctgggat aagagtagag
      241 atcctgattc ctagtcacag ttcatttcat ttttcacttc tgatgagatc tcagctgtta
      301 tctgataaaa ttgaacaact attactaggc tctgctgagt aaagcccctt gactgctctt
      361 aacagaaatc ctatacactc cactttgtca gcagttttga attcatcgtc gcaacaagat
      421 gataggaata atcttaccaa ctgagattga cagttcattt cagaaatcaa tatttacaat
      481 ttacttcttt caaagttcat tcgagagaag attccatatt atccctctcc aaataagctg
      541 atcatatctc agtcgtccct ggaatgagtt ttcccaaaat gtgaattttt ggtaaaaatc
      601 aatgtcagca ttgtgcactt taatctcgcc tatgatgaca gtaaatcttt atctttttat
      661 gggtaaacgc cactggctgc tgacaccatt tcctcgcaga acaaagcctg gtccatgtgg
      721 actatggtag atacatggaa c
//
LOCUS       KCLJ01003932             555 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 438655cal ultra-conserved element locus
            uce-39, sequence.
ACCESSION   KCLJ01003932
VERSION     KCLJ01003932.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 555)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 555)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..555
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="438655cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>555
                     /note="ultra-conserved element locus uce-39"
BASE COUNT          194 a           98 c           88 g          175 t
ORIGIN      
        1 aataatttac acttaaagag cctattctcc tagttatgcc agtatatatt tctgtataaa
       61 ttgtaatttt taaagtatta tttatacttt tatttttata ctattcacaa taaactcctg
      121 acacttctgc cccctcataa cagacaccta acaatgaagc agcttcaatt aagaagcaga
      181 acatcagcct ctggcatctt actctgttgt tccatctttt ttgctaggga gaattcattt
      241 gtttcttaat taagaaaaac accaatagca tgaaaaatct gcttatggta cctgaatggt
      301 aattaggtga aaggtaaaaa agaaacacac acatacattc cagtagcagc caaaatgaac
      361 ttgagctgat aaaaatgaac taaactaccc ttgcataaat cgaggctgag agaagtgtac
      421 agtcattatg gctaagacaa tatgcaaact atcttcaaag aaatcaaatt gctagagtgt
      481 tttcatttgc atgtattaac tattaacata atgaggagaa gtgacattgg acccggattg
      541 tgtgtctgct tggat
//
LOCUS       KCLJ01003933             500 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 438763cal ultra-conserved element locus
            uce-3778, sequence.
ACCESSION   KCLJ01003933
VERSION     KCLJ01003933.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 500)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 500)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..500
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="438763cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>500
                     /note="ultra-conserved element locus uce-3778"
BASE COUNT          109 a          120 c          114 g          157 t
ORIGIN      
        1 cagcagcccc tgcccttggc tctgctgctg ctgcctctct gcatattgca ggctcattct
       61 gatgtgcgct aatgctatta tcctccagaa attgaaatca agtctgaacc tataatgttt
      121 cactgggagg gaattggggt tatatattcc tgtgtacagc agcattctat ttcagtcata
      181 gcatttaatt atgattggtg tgttagtgcc caccagagca taacaaattg tcattatgtt
      241 attctgctga gtctaattta attggcaagt tgtcacaaaa gcaattatcc atcatttatt
      301 ttgttgccat aaccacatct tggagagcac ctgctgtctg aagtggaaag gctctgcagt
      361 ctctgggtcc tggatttctt ccactcgcct gacacaaaga caccatttcc tcctgttacg
      421 tgttcctctt tcccagcgtg ggctgggaat gctgtgggga tgctctgtgc gccctgctgg
      481 ggagaccttg gggacagccc
//
LOCUS       KCLJ01003934             559 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 438867cal ultra-conserved element locus
            uce-1243, sequence.
ACCESSION   KCLJ01003934
VERSION     KCLJ01003934.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 559)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 559)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..559
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="438867cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>559
                     /note="ultra-conserved element locus uce-1243"
BASE COUNT          170 a          104 c           83 g          202 t
ORIGIN      
        1 atcattacat tttatatcac aatatgcatt tttttataag taagctttaa acaaattaga
       61 atacttaata tgctttttga acttttgcca gatgtgtgct cccaagccgg ttccttctat
      121 ttacattgta gcatttatcc atttccaaat atgagaagat ttatctatca gattctgtgc
      181 aaattcagta cacagataat ttgtaaaaag ctttcttttt caaaatgttc tgtggttttt
      241 ctaatctcat ctcttttcta atttcctaat catataacct tgaagtctaa agacacagcc
      301 tgtgataatc tgtgtaaact gtctttattg ttatcacaga catttattac acacgcatac
      361 acattcaaag ctgcctttta agtaatactt tagtcaaagt tcaatcagat ccacattact
      421 gctactcatc agatagaaag tgtttgcaag caggaggggg atattgactt taaaaattca
      481 ctggcgaggc gtacagagcc tgcaggaatg tcaaaactcc aacctgcatt ttgatgtttt
      541 tgcctcaggt tagtcttga
//
LOCUS       KCLJ01003935             452 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 438974cal ultra-conserved element locus
            uce-1403, sequence.
ACCESSION   KCLJ01003935
VERSION     KCLJ01003935.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 452)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 452)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..452
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="438974cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>452
                     /note="ultra-conserved element locus uce-1403"
BASE COUNT          114 a          110 c           95 g          133 t
ORIGIN      
        1 cttcccttcc tttgggtggc accagagagc ttcatccccc ttcctgacat cctggatgct
       61 cccgtgggct cacccccagt gtccaggagt cacccatcaa caacaaacag ttaaatatca
      121 atgcactttg gtaacaataa accctgcttt taatttatgc taatatgtag ggttgtggtg
      181 acagtaagaa caaaattaca gagtggcttt ctagctggta attatccctc cattttcgtt
      241 gctcgggaag atggacacac aattatgctc tcttgctgta tattaatacg gattcttgac
      301 atcttcagca gacctggagc tgtcatcggg ctttttgtct actttaattg aaaattaatg
      361 gttactgtgt taccacggaa accgtggcaa tggacgccaa tagcgctcac atatcaaaca
      421 ggcactggtg gcattgtctg tccgtggtga cc
//
LOCUS       KCLJ01003936             419 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Calyptophilus tertius 439080cal ultra-conserved element locus
            uce-1021, sequence.
ACCESSION   KCLJ01003936
VERSION     KCLJ01003936.1
DBLINK      BioProject: PRJNA480834
            BioSample: SAMN10450284
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Calyptophilus tertius
  ORGANISM  Calyptophilus tertius
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Thraupidae; Calyptophilus.
REFERENCE   1  (bases 1 to 419)
  AUTHORS   Oliveros,C.H., Field,D.J., Ksepka,D.T., Barker,F.K., Aleixo,A.,
            Andersen,M.J., Alstrom,P., Benz,B.W., Braun,E.L., Braun,M.J.,
            Bravo,G.A., Brumfield,R.T., Chesser,R.T., Claramunt,S.,
            Cracraft,J., Cuervo,A.M., Derryberry,E.P., Glenn,T.C., Harvey,M.G.,
            Hosner,P.A., Joseph,L., Kimball,R., Mack,A.L., Miskelly,C.M.,
            Peterson,A.T., Robbins,M.B., Sheldon,F.H., Silveira,L.F.,
            Smith,B.T., White,N.D., Moyle,R.G. and Faircloth,B.C.
  TITLE     Earth history and the passerine superradiation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 419)
  AUTHORS   Oliveros,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 221
            passerine and non-passerine species to examine passerine
            diversification dynamics and biogeographic history. All of the UCEs
            from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..419
                     /organism="Calyptophilus tertius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="439080cal"
                     /db_xref="taxon:347960"
                     /tissue_type="muscle/liver"
                     /geo_loc_name="Dominican Republic"
     misc_feature    <1..>419
                     /note="ultra-conserved element locus uce-1021"
BASE COUNT          129 a           86 c           90 g          114 t
ORIGIN      
        1 aattcccaag tcagagcagg agaggaaatt aatggcagcg ttcaagaaga atgatggagg
       61 gaaatataga aagcagtcaa tagcccattc tgcgctgtac ggacctgaca ggaatttcac
      121 agtctcttgg tttttcagcc cactcatgtg cattcatcag aaaccagtca catctggctg
      181 ccaggatggg gggttaattt tctctaaatg cctcagcagt tttgttctag ctgaggcaaa
      241 ctctgtgact gcaaagctga tgagtaaaat atttctactt cacccagttt aactcaaaac
      301 cgatagcctc gggacatatt gaacctttct taaaataatc ttttgaagct ttttcaatgg
      361 cacatcaggt caggccaaag tttaaaatac aagtttaaga ctttgatgga cacaagggc
//
